Query 006752
Match_columns 632
No_of_seqs 551 out of 4686
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 13:58:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.6E-49 3.5E-54 461.0 21.7 505 65-622 69-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.6E-47 3.4E-52 444.4 23.2 487 64-573 92-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.6E-41 7.8E-46 332.6 4.6 385 119-560 82-477 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.1E-37 2.5E-42 308.0 4.9 361 91-507 79-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.7E-33 3.6E-38 267.0 -10.0 427 65-535 68-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 3.2E-31 7E-36 264.2 -1.8 362 90-534 7-374 (1255)
7 KOG0618 Serine/threonine phosp 100.0 3.5E-31 7.7E-36 275.8 -2.2 435 30-533 6-487 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 1.4E-30 3.1E-35 259.6 -0.6 364 65-511 7-375 (1255)
9 KOG0472 Leucine-rich repeat pr 100.0 7.1E-32 1.5E-36 256.0 -9.9 458 27-536 14-519 (565)
10 KOG0618 Serine/threonine phosp 99.9 3.1E-29 6.8E-34 261.4 -3.0 439 67-540 23-470 (1081)
11 KOG4237 Extracellular matrix p 99.9 1.5E-26 3.3E-31 219.7 -5.3 433 25-532 49-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 3.5E-21 7.5E-26 224.3 18.4 153 84-241 552-714 (1153)
13 PLN03210 Resistant to P. syrin 99.9 1.5E-20 3.3E-25 219.0 19.6 333 133-533 551-904 (1153)
14 KOG4237 Extracellular matrix p 99.8 4.2E-23 9.1E-28 196.4 -2.6 106 444-549 268-373 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1.2E-20 2.5E-25 204.2 12.4 193 166-389 203-396 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 9.2E-21 2E-25 204.9 11.3 266 140-496 201-467 (788)
17 cd00116 LRR_RI Leucine-rich re 99.8 8.7E-19 1.9E-23 177.8 17.9 278 94-387 2-319 (319)
18 cd00116 LRR_RI Leucine-rich re 99.8 2.9E-18 6.2E-23 174.0 19.2 278 69-363 2-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 7.3E-18 1.6E-22 183.8 10.6 78 450-534 346-427 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 3.3E-17 7.3E-22 178.7 12.2 202 164-389 178-381 (754)
21 KOG0617 Ras suppressor protein 99.5 8.7E-16 1.9E-20 130.2 -5.1 183 295-536 27-213 (264)
22 KOG4341 F-box protein containi 99.5 7.5E-14 1.6E-18 135.0 6.2 324 30-381 113-458 (483)
23 KOG1909 Ran GTPase-activating 99.4 1.6E-12 3.5E-17 123.3 11.9 247 134-388 24-311 (382)
24 KOG0617 Ras suppressor protein 99.4 9.6E-15 2.1E-19 123.9 -3.7 153 326-535 33-186 (264)
25 KOG1909 Ran GTPase-activating 99.4 2E-12 4.4E-17 122.5 10.9 256 82-363 22-310 (382)
26 KOG3207 Beta-tubulin folding c 99.3 2.5E-13 5.4E-18 132.1 2.0 212 252-513 119-341 (505)
27 KOG2120 SCF ubiquitin ligase, 99.3 9.5E-13 2.1E-17 121.8 3.7 181 60-241 180-373 (419)
28 KOG4341 F-box protein containi 99.3 3.4E-12 7.4E-17 123.7 6.3 283 59-359 158-460 (483)
29 KOG3207 Beta-tubulin folding c 99.3 3.2E-12 6.9E-17 124.5 4.7 211 276-537 118-341 (505)
30 KOG1259 Nischarin, modulator o 99.1 3.7E-12 8E-17 117.9 -1.5 130 350-536 283-413 (490)
31 PF14580 LRR_9: Leucine-rich r 99.1 7.6E-11 1.7E-15 105.2 5.0 129 252-383 17-148 (175)
32 PF14580 LRR_9: Leucine-rich r 99.0 1.9E-10 4.2E-15 102.7 5.1 126 429-556 20-148 (175)
33 PLN03150 hypothetical protein; 99.0 2.2E-10 4.8E-15 125.2 6.4 93 445-537 437-530 (623)
34 KOG1259 Nischarin, modulator o 99.0 4.1E-11 8.9E-16 111.1 0.4 129 326-488 284-413 (490)
35 KOG0532 Leucine-rich repeat (L 99.0 1.1E-11 2.4E-16 124.5 -4.7 209 238-509 57-271 (722)
36 COG4886 Leucine-rich repeat (L 99.0 7.9E-10 1.7E-14 115.5 8.5 67 446-515 228-294 (394)
37 KOG2120 SCF ubiquitin ligase, 99.0 3E-10 6.6E-15 105.4 4.7 190 141-354 186-390 (419)
38 COG4886 Leucine-rich repeat (L 99.0 8.7E-10 1.9E-14 115.2 6.9 192 283-535 97-290 (394)
39 PLN03150 hypothetical protein; 98.9 1.2E-09 2.5E-14 119.5 6.9 111 352-513 419-530 (623)
40 PF13855 LRR_8: Leucine rich r 98.9 6.3E-10 1.4E-14 81.6 2.6 59 475-533 2-60 (61)
41 PF13855 LRR_8: Leucine rich r 98.9 8.7E-10 1.9E-14 80.8 3.2 61 450-510 1-61 (61)
42 KOG0532 Leucine-rich repeat (L 98.9 6E-11 1.3E-15 119.4 -5.2 174 301-536 75-248 (722)
43 KOG0531 Protein phosphatase 1, 98.9 2.9E-10 6.2E-15 118.9 -1.4 196 277-534 116-317 (414)
44 KOG0531 Protein phosphatase 1, 98.8 5.6E-10 1.2E-14 116.7 -0.4 243 212-517 72-324 (414)
45 KOG4658 Apoptotic ATPase [Sign 98.8 2.4E-09 5.2E-14 119.5 4.4 294 88-385 543-856 (889)
46 COG5238 RNA1 Ran GTPase-activa 98.8 2E-08 4.4E-13 92.3 7.3 248 135-390 25-318 (388)
47 COG5238 RNA1 Ran GTPase-activa 98.7 6.5E-08 1.4E-12 89.0 9.2 247 108-365 23-317 (388)
48 KOG4658 Apoptotic ATPase [Sign 98.7 9E-09 2E-13 115.0 2.5 109 113-222 543-652 (889)
49 KOG1859 Leucine-rich repeat pr 98.5 3.9E-09 8.4E-14 109.4 -4.3 177 275-511 105-292 (1096)
50 KOG2982 Uncharacterized conser 98.5 7.7E-08 1.7E-12 89.7 4.3 176 138-314 69-262 (418)
51 KOG1859 Leucine-rich repeat pr 98.4 8.7E-09 1.9E-13 106.8 -4.5 124 165-292 165-292 (1096)
52 KOG3665 ZYG-1-like serine/thre 98.4 5.6E-07 1.2E-11 98.3 9.0 231 6-244 2-263 (699)
53 KOG2982 Uncharacterized conser 98.4 3E-07 6.5E-12 85.9 3.7 206 165-390 46-264 (418)
54 KOG3665 ZYG-1-like serine/thre 98.3 7.9E-07 1.7E-11 97.1 7.4 137 65-204 122-266 (699)
55 KOG4579 Leucine-rich repeat (L 98.2 2.8E-07 6E-12 76.1 -1.0 129 352-534 28-158 (177)
56 KOG1947 Leucine rich repeat pr 98.1 4.9E-06 1.1E-10 89.6 6.9 244 83-339 181-440 (482)
57 KOG1947 Leucine rich repeat pr 98.0 7.9E-06 1.7E-10 88.0 6.2 132 253-384 187-330 (482)
58 KOG1644 U2-associated snRNP A' 98.0 1.2E-05 2.5E-10 71.4 5.5 101 213-313 43-152 (233)
59 KOG4579 Leucine-rich repeat (L 97.9 2.6E-06 5.6E-11 70.5 0.4 62 326-389 53-114 (177)
60 PF12799 LRR_4: Leucine Rich r 97.9 7.9E-06 1.7E-10 54.6 2.7 37 475-512 2-38 (44)
61 KOG1644 U2-associated snRNP A' 97.8 1.8E-05 3.9E-10 70.2 4.2 108 278-386 41-151 (233)
62 PF12799 LRR_4: Leucine Rich r 97.7 5.7E-05 1.2E-09 50.5 3.9 38 232-269 2-39 (44)
63 KOG4308 LRR-containing protein 97.5 1.4E-05 2.9E-10 83.8 -1.4 296 92-390 89-447 (478)
64 PF13306 LRR_5: Leucine rich r 97.5 0.00011 2.4E-09 63.1 4.4 122 85-214 7-128 (129)
65 PRK15386 type III secretion pr 97.5 0.00041 8.9E-09 70.1 8.3 54 278-336 51-104 (426)
66 KOG4308 LRR-containing protein 97.4 1.2E-05 2.5E-10 84.3 -3.3 43 301-343 262-307 (478)
67 PRK15386 type III secretion pr 97.4 0.00085 1.8E-08 67.9 9.2 35 111-150 48-82 (426)
68 KOG2123 Uncharacterized conser 97.3 2.7E-05 5.8E-10 72.4 -1.8 59 326-389 19-77 (388)
69 KOG2739 Leucine-rich acidic nu 97.3 9.2E-05 2E-09 68.8 1.3 107 277-384 41-152 (260)
70 PF13306 LRR_5: Leucine rich r 97.3 0.00019 4E-09 61.7 3.0 76 445-524 53-128 (129)
71 KOG3864 Uncharacterized conser 97.1 0.00028 6E-09 62.9 2.4 82 67-149 103-185 (221)
72 KOG2739 Leucine-rich acidic nu 97.1 0.00027 5.9E-09 65.7 2.2 70 224-293 58-130 (260)
73 KOG2123 Uncharacterized conser 97.1 7.6E-05 1.6E-09 69.5 -1.6 82 255-340 20-102 (388)
74 KOG3864 Uncharacterized conser 96.8 0.00068 1.5E-08 60.5 2.0 83 91-174 102-186 (221)
75 PF00560 LRR_1: Leucine Rich R 94.9 0.017 3.7E-07 31.9 1.5 19 500-519 2-20 (22)
76 PF00560 LRR_1: Leucine Rich R 94.6 0.013 2.8E-07 32.4 0.5 12 476-487 2-13 (22)
77 PF13516 LRR_6: Leucine Rich r 93.0 0.073 1.6E-06 30.1 1.8 21 351-371 2-22 (24)
78 smart00367 LRR_CC Leucine-rich 92.5 0.13 2.8E-06 29.7 2.4 22 115-136 2-23 (26)
79 smart00367 LRR_CC Leucine-rich 91.9 0.17 3.6E-06 29.3 2.4 24 89-112 1-24 (26)
80 PF13516 LRR_6: Leucine Rich r 90.1 0.18 4E-06 28.4 1.3 20 326-345 2-21 (24)
81 KOG0473 Leucine-rich repeat pr 89.9 0.023 5E-07 52.1 -3.9 64 446-511 61-124 (326)
82 smart00369 LRR_TYP Leucine-ric 89.3 0.22 4.7E-06 28.7 1.3 15 475-489 3-17 (26)
83 smart00370 LRR Leucine-rich re 89.3 0.22 4.7E-06 28.7 1.3 15 475-489 3-17 (26)
84 KOG0473 Leucine-rich repeat pr 88.8 0.033 7.1E-07 51.1 -3.7 87 445-534 37-123 (326)
85 smart00369 LRR_TYP Leucine-ric 87.0 0.37 8.1E-06 27.7 1.3 22 497-518 1-22 (26)
86 smart00370 LRR Leucine-rich re 87.0 0.37 8.1E-06 27.7 1.3 22 497-518 1-22 (26)
87 TIGR00864 PCC polycystin catio 87.0 0.28 6.1E-06 60.8 1.4 45 504-548 1-45 (2740)
88 KOG4242 Predicted myosin-I-bin 85.8 3.8 8.3E-05 42.1 8.3 106 114-224 164-280 (553)
89 smart00368 LRR_RI Leucine rich 82.4 1.9 4E-05 25.4 2.8 22 351-372 2-23 (28)
90 smart00368 LRR_RI Leucine rich 81.4 1.9 4.1E-05 25.3 2.6 20 327-346 3-22 (28)
91 KOG3763 mRNA export factor TAP 69.3 4.9 0.00011 42.2 3.6 10 614-623 544-553 (585)
92 smart00365 LRR_SD22 Leucine-ri 66.9 5.9 0.00013 22.9 2.1 14 213-226 3-16 (26)
93 KOG3763 mRNA export factor TAP 66.1 5.8 0.00013 41.7 3.4 64 113-178 216-284 (585)
94 smart00364 LRR_BAC Leucine-ric 57.2 6.9 0.00015 22.6 1.2 17 232-248 3-19 (26)
95 KOG1665 AFH1-interacting prote 29.5 74 0.0016 29.4 3.8 9 302-310 172-180 (302)
96 TIGR00864 PCC polycystin catio 28.3 40 0.00086 43.2 2.6 33 456-488 1-33 (2740)
97 KOG4242 Predicted myosin-I-bin 20.0 70 0.0015 33.4 2.1 21 373-393 163-183 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-49 Score=461.03 Aligned_cols=505 Identities=19% Similarity=0.191 Sum_probs=382.2
Q ss_pred CcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHh-hhCCCCcCEEeccCCCCCChhhHhhhcCCCCcc
Q 006752 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWA-LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (632)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 143 (632)
.+++.|+|++| .+.+..+..|..+++|++|+|++|. +++..+.. +.++++|++|++++| .+++..+. +.+++|+
T Consensus 69 ~~v~~L~L~~~-~i~~~~~~~~~~l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~~l~~L~ 143 (968)
T PLN00113 69 SRVVSIDLSGK-NISGKISSAIFRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--GSIPNLE 143 (968)
T ss_pred CcEEEEEecCC-CccccCChHHhCCCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCC-ccccccCc--cccCCCC
Confidence 46899999998 4666667888999999999999998 66444444 458999999999998 55543332 4688999
Q ss_pred EEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCC
Q 006752 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223 (632)
Q Consensus 144 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 223 (632)
+|++++|.+++..|..+..+++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 99999999988888889999999999999999988888899999999999999999998899999999999999999998
Q ss_pred CCC-----CCCCCCCCEEECCCCccc-chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--h
Q 006752 224 VTK-----LPNISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--C 295 (632)
Q Consensus 224 l~~-----l~~l~~L~~L~L~~~~l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~ 295 (632)
+.+ +.++++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+. .
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCeeccCCCh
Confidence 774 457899999999999987 6777888999999999999988764332 345789999999999998765 5
Q ss_pred hhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCC
Q 006752 296 FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP 375 (632)
Q Consensus 296 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 375 (632)
.+..+++|++|++++|.+.+..|..+..+ ++|+.|++++|.+++..+..+ +.+++|+.|++++|++++..|..+..++
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNL-GKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHH-hCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 67888999999999999998888888877 899999999999988877776 6789999999999999988888898899
Q ss_pred CccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccccccc--chHHhhcCCccc
Q 006752 376 SLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVL--SLTALQNLNHLE 453 (632)
Q Consensus 376 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~--~~~~l~~l~~L~ 453 (632)
+|+.|++++|++.+.+|..+..+ ..++.+++++|.+. ....+.++++|+
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~-----------------------------~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 431 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGAC-----------------------------RSLRRVRLQDNSFSGELPSEFTKLPLVY 431 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCC-----------------------------CCCCEEECcCCEeeeECChhHhcCCCCC
Confidence 99999999999998877754321 23444555555442 123566666677
Q ss_pred ccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCc
Q 006752 454 RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 533 (632)
Q Consensus 454 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~ 533 (632)
.|++++|.+++..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++++..|..+..+++|+.|++++|.
T Consensus 432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 510 (968)
T PLN00113 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510 (968)
T ss_pred EEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCc
Confidence 77777777766666666666667777777776666555544 34666677777777666666666666666777777766
Q ss_pred ccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCCCcchhhhhh------hcccCCCCCCCccchhcccccCHHHH
Q 006752 534 LLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREEL 607 (632)
Q Consensus 534 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip~~~~~~~~~------~n~~~~~~~~~~~~~~~~~~~~~~~~ 607 (632)
+ .+..+..+. ..+ ..+.+++++|+++|.+|..++.+..+ .|+++|.+|..... .+.++.
T Consensus 511 l-~~~~p~~~~-~l~-------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~ 575 (968)
T PLN00113 511 L-SGEIPDELS-SCK-------KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN------VESLVQ 575 (968)
T ss_pred c-eeeCChHHc-Ccc-------CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhc------CcccCE
Confidence 5 222222221 111 12445566677777776666655444 56666643322222 235667
Q ss_pred HHhhcccccccCCCC
Q 006752 608 LELQYSSLSLARPDD 622 (632)
Q Consensus 608 l~l~~n~l~g~ip~~ 622 (632)
+++++|+++|.||..
T Consensus 576 l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 576 VNISHNHLHGSLPST 590 (968)
T ss_pred EeccCCcceeeCCCc
Confidence 788888888888854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-47 Score=444.41 Aligned_cols=487 Identities=21% Similarity=0.200 Sum_probs=308.1
Q ss_pred cCcccEEeccCCCCCCHHHHH-HhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCc
Q 006752 64 KHNAEAIELRGENSVDAEWMA-YLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTL 142 (632)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L 142 (632)
.++|+.|+|++|. +.+.++. .+..+++|++|++++|. +++..+ ...+++|++|++++| .+....+..++++++|
T Consensus 92 l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~-l~~~~p--~~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 92 LPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNN-FTGSIP--RGSIPNLETLDLSNN-MLSGEIPNDIGSFSSL 166 (968)
T ss_pred CCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCc-cccccC--ccccCCCCEEECcCC-cccccCChHHhcCCCC
Confidence 4678888888884 4433443 34577888888888877 544332 245677777777777 5555556667777777
Q ss_pred cEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCC
Q 006752 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT 222 (632)
Q Consensus 143 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 222 (632)
++|++++|.+.+..|..+.++++|++|++++|.+.+..|..++.+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 77777777777667777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCC-----CCCCCCCCEEECCCCccc-chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--
Q 006752 223 GVTK-----LPNISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-- 294 (632)
Q Consensus 223 ~l~~-----l~~l~~L~~L~L~~~~l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-- 294 (632)
.+++ +.++++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+.
T Consensus 247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCCccCCcCC
Confidence 6653 345677777777777776 4566666777777777777776654332 234667777777777777654
Q ss_pred hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcC
Q 006752 295 CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM 374 (632)
Q Consensus 295 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 374 (632)
..+..+++|+.|++++|.+.+..|..+... ++|+.|++++|++++..+..+ ..+++|+.|++++|.+.+..|..+..+
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGL-CSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeEeeCChhH-hCcCCCCEEECcCCEecccCCHHHhCC
Confidence 456667777777777777776666666665 677777777777766666555 345667777777776666666666666
Q ss_pred CCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccccccccc-ccchhhhccccccccc-chHHhhcCCcc
Q 006752 375 PSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSV-LAGFIQQVGAETDLVL-SLTALQNLNHL 452 (632)
Q Consensus 375 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~l~-~~~~l~~l~~L 452 (632)
++|+.|++++|++++..|..+..+ ..+..+....|.+.+ .+|... ....++.+++++|.+. .++.....++|
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L 477 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKL-PLVYFLDISNNNLQG-----RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRL 477 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcC-CCCCEEECcCCcccC-----ccChhhccCCCCcEEECcCceeeeecCcccccccc
Confidence 677777777776666655543221 111111111111111 011110 1234555666655542 12223344566
Q ss_pred cccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCC
Q 006752 453 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 532 (632)
Q Consensus 453 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N 532 (632)
+.|++++|++++..|..+..+++|+.|+|++|.+.+.+|..+..+++|++|++++|.+++.+|..|..+++|+.||+++|
T Consensus 478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 557 (968)
T PLN00113 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557 (968)
T ss_pred eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCCC
Q 006752 533 WLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPS 573 (632)
Q Consensus 533 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip~ 573 (632)
++ .+..+..+.. .. .....++++|+++|.+|.
T Consensus 558 ~l-~~~~p~~l~~-l~-------~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 558 QL-SGEIPKNLGN-VE-------SLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cc-cccCChhHhc-Cc-------ccCEEeccCCcceeeCCC
Confidence 65 3333322221 11 124455566666666664
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-41 Score=332.62 Aligned_cols=385 Identities=20% Similarity=0.262 Sum_probs=279.9
Q ss_pred EEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCC
Q 006752 119 ELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS 198 (632)
Q Consensus 119 ~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n 198 (632)
.||+++| .+.+..+..|.++++|+++++.+|.++. +|..-....+|+.|+|.+|.|+....+.++.++.|+.|||+.|
T Consensus 82 ~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 82 TLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeecccc-ccccCcHHHHhcCCcceeeeeccchhhh-cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 3444444 3444444444444455555554444442 2322222334555555555554444444444555555555555
Q ss_pred CCCchhhHhhcCCCCCcEEEccCCCCCC-----CCCCCCCCEEECCCCcccchhcccc-CCCCCcEEEeeCCCCCchhhh
Q 006752 199 QVSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREA 272 (632)
Q Consensus 199 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----l~~l~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~ 272 (632)
.|+...-..|..-.++++|+|++|.|+. +..+.+|..|.|+.|+++.+|...+ ++++|+.|+|..|++.-+ ..
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv-e~ 238 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV-EG 238 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee-hh
Confidence 5544333344444455555555555543 3345566667777777777776655 477777777777776543 23
Q ss_pred hhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcC
Q 006752 273 FLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHL 350 (632)
Q Consensus 273 ~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 350 (632)
..|..+++|+.|.+..|.+... ..|..+.++++|+++.|+++...-.++.++ ++|+.|++++|.|....+..+ ..+
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih~d~W-sft 316 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIHIDSW-SFT 316 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc-chhhhhccchhhhheeecchh-hhc
Confidence 4677888888888888888777 678888899999999999888777788888 899999999998888777777 668
Q ss_pred CCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchh
Q 006752 351 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFI 430 (632)
Q Consensus 351 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 430 (632)
++|++|+|++|+++...+..|..+..|+.|+|++|.+... .+
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l-~e------------------------------------- 358 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL-AE------------------------------------- 358 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH-Hh-------------------------------------
Confidence 8999999999999888888898899999999999988765 22
Q ss_pred hhcccccccccchHHhhcCCcccccccCccCCCCCcc---ccccCcccccccccccccCCCcchhhhccCCCCcEEeecC
Q 006752 431 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL---FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 507 (632)
Q Consensus 431 ~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~ 507 (632)
.+|..+++|++|||++|.++..+. ..|.++++|+.|+|.+|++..+.-.+|.++++|+.|||.+
T Consensus 359 -------------~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 359 -------------GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred -------------hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCC
Confidence 378889999999999998876543 4478899999999999999998889999999999999999
Q ss_pred ceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeecccccc
Q 006752 508 AVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVIC 560 (632)
Q Consensus 508 N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (632)
|.|..+-|++|..+ .|+.|-+..-.|.|+|.++|+.+|.............|
T Consensus 426 NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~C 477 (873)
T KOG4194|consen 426 NAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKC 477 (873)
T ss_pred Ccceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeec
Confidence 99999999999999 99999999999999999999999986655544444444
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-37 Score=307.96 Aligned_cols=361 Identities=20% Similarity=0.298 Sum_probs=247.0
Q ss_pred CccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhc-CCCCccEEEccCCCCCHhHHHHhcCCCCCCEE
Q 006752 91 YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTADGIALLSSLQNLSVL 169 (632)
Q Consensus 91 ~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 169 (632)
.-+.|++++|. +.+..+..|.++++|+++++.+| .++. ++.++ ...+|+.|+|.+|.|+......+..++.|++|
T Consensus 79 ~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N-~Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 79 QTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKN-ELTR--IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred ceeeeeccccc-cccCcHHHHhcCCcceeeeeccc-hhhh--cccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 34456666666 66666666666666666666666 3332 22233 33446666666666666555666666666666
Q ss_pred EcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC-----CCCCCCEEECCCCccc
Q 006752 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTID 244 (632)
Q Consensus 170 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~l~~L~~L~L~~~~l~ 244 (632)
||+.|.|+...-..|..-.++++|+|++|.|+......|..+.+|..|.|+.|+++.+| ++++|+.|+|..|++.
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 66666666554445555566666666666666666666666666666666666666554 4666666666666665
Q ss_pred ch-hccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHH
Q 006752 245 SI-LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMV 321 (632)
Q Consensus 245 ~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~ 321 (632)
.+ --.+.++++|+.|.+..|++...... .|..+.++++|+|..|++..+ .++-+++.|+.|++++|.|....++.+
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG-~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDG-AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCc-ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 43 22334666677777777666655443 455677777777777777766 667777888888888888777777766
Q ss_pred HhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhh
Q 006752 322 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFS 401 (632)
Q Consensus 322 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 401 (632)
... ++|++|++++|+++...+..+ ..+..|++|.|++|.++.....+|..+++|+.|||++|.++..+.+.-
T Consensus 314 sft-qkL~~LdLs~N~i~~l~~~sf-~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa------ 385 (873)
T KOG4194|consen 314 SFT-QKLKELDLSSNRITRLDEGSF-RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA------ 385 (873)
T ss_pred hhc-ccceeEeccccccccCChhHH-HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch------
Confidence 665 788888888888877777766 457788888888888877777777788888888888888877655521
Q ss_pred hhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCccccccccc
Q 006752 402 AYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 481 (632)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 481 (632)
..|.++++|+.|+|.+|++..+.-.+|.+++.|++|||
T Consensus 386 ------------------------------------------~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 386 ------------------------------------------VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred ------------------------------------------hhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence 35677788888888888887766677888888888888
Q ss_pred ccccCCCcchhhhccCCCCcEEeecC
Q 006752 482 RNASLTDVSLHQLSSLSKLTNLSIRD 507 (632)
Q Consensus 482 s~n~l~~~~~~~~~~l~~L~~L~ls~ 507 (632)
.+|.|..+-|.+|..+ .|+.|.+..
T Consensus 424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 424 GDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred CCCcceeecccccccc-hhhhhhhcc
Confidence 8888888778888777 777776654
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=1.7e-33 Score=267.01 Aligned_cols=427 Identities=17% Similarity=0.172 Sum_probs=280.5
Q ss_pred CcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccE
Q 006752 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (632)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~ 144 (632)
..+++|++++|+.. ..+++++.+..++.++.++|+ +. ..+..+..+..|+.|++++|. +.. .+..++.+-.|+.
T Consensus 68 ~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~-ls-~lp~~i~s~~~l~~l~~s~n~-~~e-l~~~i~~~~~l~d 141 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNK-LS-ELPEQIGSLISLVKLDCSSNE-LKE-LPDSIGRLLDLED 141 (565)
T ss_pred cceeEEEeccchhh--hCCHHHHHHHHHHHhhcccch-Hh-hccHHHhhhhhhhhhhccccc-eee-cCchHHHHhhhhh
Confidence 34666666666322 344556666666777777666 43 345566666777777777763 332 2445566667777
Q ss_pred EEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCC
Q 006752 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224 (632)
Q Consensus 145 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 224 (632)
++..+|+++. .|..+..+.+|..+++.+|++....|..+. ++.|++||...|-+. ..|..++.+.+|..|++..|++
T Consensus 142 l~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 142 LDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccc
Confidence 7777777664 445566666777777777777665554444 777777777777664 4566677777777777877776
Q ss_pred CC---CCCCCCCCEEECCCCcccchhcccc-CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch-hhhhc
Q 006752 225 TK---LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQ 299 (632)
Q Consensus 225 ~~---l~~l~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~ 299 (632)
.. |++|..|++++++.|.+..+|+... .++++..|++.+|++...|.... -+.+|++||+++|.+++. ..+++
T Consensus 219 ~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~is~Lp~sLgn 296 (565)
T KOG0472|consen 219 RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDISSLPYSLGN 296 (565)
T ss_pred ccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCccccCCccccc
Confidence 64 4466677777777777777776655 77777777777777777776543 456777777777777777 56666
Q ss_pred CCCCCeeeccCCCCCch-----------HHHHHHh-----------------------------cCCCCcEEEccCCcCc
Q 006752 300 MKALEHLDLSSSMIGDD-----------SVEMVAC-----------------------------VGANLRNLNLSNTRFS 339 (632)
Q Consensus 300 ~~~L~~L~l~~n~l~~~-----------~~~~~~~-----------------------------~~~~L~~L~l~~n~l~ 339 (632)
+ +|+.|.+.+|.+... ....+.. ...+.+.|++++-+++
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 6 777777777754311 0011100 0024566777776666
Q ss_pred chhHHHHHhc-CCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccc
Q 006752 340 SAGVGILAGH-LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGY 418 (632)
Q Consensus 340 ~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (632)
....+.|-.. -.-.+..+++.|++. +.|..+..+..+.+.-+..|+..+.+|..++.
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~--------------------- 433 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQ--------------------- 433 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHh---------------------
Confidence 5555444211 113567777777765 34444444444433333333333333332211
Q ss_pred cccccccccchhhhcccccccccch-HHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccC
Q 006752 419 VIFPSSVLAGFIQQVGAETDLVLSL-TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL 497 (632)
Q Consensus 419 ~~~~~~~~~~~l~~l~~~~~~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 497 (632)
...+..|++++|.+-.+ ..++.+..||.||+++|++.. .|..+..+..++.+-.++|++....|+.+.++
T Consensus 434 --------l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 434 --------LQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred --------hhcceeeecccchhhhcchhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 12344445554444222 356777889999999998877 78887778888888889999999889889999
Q ss_pred CCCcEEeecCceeccCCCCCCCCCCCcceEecCCCccc
Q 006752 498 SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 535 (632)
Q Consensus 498 ~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~ 535 (632)
.+|..||+.+|.+..+ |..++++.+|++|++++|+|.
T Consensus 505 ~nL~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQQI-PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhcceeccCCCchhhC-ChhhccccceeEEEecCCccC
Confidence 9999999999999985 888999999999999999984
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.2e-31 Score=264.16 Aligned_cols=362 Identities=22% Similarity=0.222 Sum_probs=176.8
Q ss_pred CCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEE
Q 006752 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169 (632)
Q Consensus 90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 169 (632)
+-.|-.++++|.+-.+..|.....+++++.|.|... .+. ..|+.++.+.+|++|.+++|++.. .-..++.++.|+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSV 83 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHH
Confidence 344444555544222334444444444444444443 221 223344444444444444444432 22234444444444
Q ss_pred EcCCCCCChH-HHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhc
Q 006752 170 DLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILE 248 (632)
Q Consensus 170 ~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~ 248 (632)
.+..|++... +|..+..+..|+.|||++|++. ..|..+... +++-.|+|++|+|..+|.
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~A-------------------Kn~iVLNLS~N~IetIPn 143 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYA-------------------KNSIVLNLSYNNIETIPN 143 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhh-------------------cCcEEEEcccCccccCCc
Confidence 4444443211 2333334444444444444443 223333333 334444444444444444
Q ss_pred ccc-CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCC-CchHHHHHHhc
Q 006752 249 GNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMI-GDDSVEMVACV 324 (632)
Q Consensus 249 ~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l-~~~~~~~~~~~ 324 (632)
.++ ++..|-.|++++|++...|+... .+..|++|++++|.+..+ ..+..+++|+.|.+++.+- .+.+|..+.++
T Consensus 144 ~lfinLtDLLfLDLS~NrLe~LPPQ~R--RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l 221 (1255)
T KOG0444|consen 144 SLFINLTDLLFLDLSNNRLEMLPPQIR--RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL 221 (1255)
T ss_pred hHHHhhHhHhhhccccchhhhcCHHHH--HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh
Confidence 433 44444444444444444444322 344444444444444433 3334444445555554321 12334444444
Q ss_pred CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhh
Q 006752 325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYC 404 (632)
Q Consensus 325 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 404 (632)
.+|..++++.|.+... |..+ -.+++|+.|+||+|+|+... .....-.+|++|++|.|+++.. |.
T Consensus 222 -~NL~dvDlS~N~Lp~v-Pecl-y~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt~L-P~----------- 285 (1255)
T KOG0444|consen 222 -HNLRDVDLSENNLPIV-PECL-YKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLTVL-PD----------- 285 (1255)
T ss_pred -hhhhhccccccCCCcc-hHHH-hhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhccc-hH-----------
Confidence 4555555555544422 2222 23445555555555544211 1122333455555555555442 33
Q ss_pred hhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCC-ccccccCccccccccccc
Q 006752 405 FMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA-TLFPLSTFKELIHLSLRN 483 (632)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~ 483 (632)
++..+++|+.|.+.+|+++-. +|..++.+.+|+++..++
T Consensus 286 ----------------------------------------avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan 325 (1255)
T KOG0444|consen 286 ----------------------------------------AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN 325 (1255)
T ss_pred ----------------------------------------HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc
Confidence 456667777777777755421 567777777777777777
Q ss_pred ccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752 484 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 534 (632)
Q Consensus 484 n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l 534 (632)
|++.- .|+.++.|+.|+.|.|++|++.+. |+.+.-++.|+.||+..|+-
T Consensus 326 N~LEl-VPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 326 NKLEL-VPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred ccccc-CchhhhhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCCcC
Confidence 77764 677777777777777777777664 77777777777777777763
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=3.5e-31 Score=275.85 Aligned_cols=435 Identities=21% Similarity=0.240 Sum_probs=297.2
Q ss_pred hhhcccCCcHHHHH-HHHHHHHhcccc---chhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCc
Q 006752 30 QRRSLERLPAHLAD-SLLRHLIRRRLI---FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTS 105 (632)
Q Consensus 30 ~~~~l~~lp~~l~~-~~l~~L~~~~~~---~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~ 105 (632)
+...++.+|..+-. +.+..+...+-. .|--+-.-+-+|+.||++.|. -..++..+..+.+|+.|+++.|. +..
T Consensus 6 s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~--~~~fp~~it~l~~L~~ln~s~n~-i~~ 82 (1081)
T KOG0618|consen 6 SDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQ--ISSFPIQITLLSHLRQLNLSRNY-IRS 82 (1081)
T ss_pred ccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccc--cccCCchhhhHHHHhhcccchhh-Hhh
Confidence 44667778876554 223322211111 221111113347788888773 22344555666778888888766 543
Q ss_pred hhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCC-------------------C
Q 006752 106 SALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQN-------------------L 166 (632)
Q Consensus 106 ~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-------------------L 166 (632)
.+.+..++.+|++|.|.+|. ....+..+..+.+|++|++++|.+... |..+..+.. .
T Consensus 83 -vp~s~~~~~~l~~lnL~~n~--l~~lP~~~~~lknl~~LdlS~N~f~~~-Pl~i~~lt~~~~~~~s~N~~~~~lg~~~i 158 (1081)
T KOG0618|consen 83 -VPSSCSNMRNLQYLNLKNNR--LQSLPASISELKNLQYLDLSFNHFGPI-PLVIEVLTAEEELAASNNEKIQRLGQTSI 158 (1081)
T ss_pred -Cchhhhhhhcchhheeccch--hhcCchhHHhhhcccccccchhccCCC-chhHHhhhHHHHHhhhcchhhhhhccccc
Confidence 33566677888888888773 334456677778888888888876542 222222222 4
Q ss_pred CEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCC--------------------
Q 006752 167 SVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-------------------- 226 (632)
Q Consensus 167 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-------------------- 226 (632)
+.+++..|.+.+.++..+..+.. .|+|.+|.+... .+..+++|+.+....|+++.
T Consensus 159 k~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~ 233 (1081)
T KOG0618|consen 159 KKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTT 233 (1081)
T ss_pred hhhhhhhhhcccchhcchhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCccee
Confidence 44555555555555544444444 577777776522 23344444444444443332
Q ss_pred C---CCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch-hhhhcCCC
Q 006752 227 L---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKA 302 (632)
Q Consensus 227 l---~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~ 302 (632)
+ +.-.+|++++++.+++..+|.++..+.+|+.+....|.+...+.... ...+|+.|++..|.+..+ +.....+.
T Consensus 234 ~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~--~~~~L~~l~~~~nel~yip~~le~~~s 311 (1081)
T KOG0618|consen 234 LDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRIS--RITSLVSLSAAYNELEYIPPFLEGLKS 311 (1081)
T ss_pred eccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHh--hhhhHHHHHhhhhhhhhCCCcccccce
Confidence 1 12357778888888888888888888888888888888866665432 567788888888888877 45555888
Q ss_pred CCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEc
Q 006752 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI 382 (632)
Q Consensus 303 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L 382 (632)
|++|++..|++.......+.....++..|+.+.|++....... -...+.|+.|++.+|.+++.....+.+++.|+.|+|
T Consensus 312 L~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~-e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 312 LRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE-ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL 390 (1081)
T ss_pred eeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc-chhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence 8999998888876544444433234777888888776543211 134567999999999999998888999999999999
Q ss_pred cCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCC
Q 006752 383 SNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV 462 (632)
Q Consensus 383 s~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l 462 (632)
++|++... |+ ..+.++..|+.|+||+|.+
T Consensus 391 syNrL~~f-pa--------------------------------------------------s~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 391 SYNRLNSF-PA--------------------------------------------------SKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred cccccccC-CH--------------------------------------------------HHHhchHHhHHHhcccchh
Confidence 99999875 65 3678899999999999999
Q ss_pred CCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCc
Q 006752 463 SDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 533 (632)
Q Consensus 463 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~ 533 (632)
+. +|..+..++.|++|...+|.+.. .| .+..++.|+.+|+|.|+++......-.+.++|++||+++|.
T Consensus 420 ~~-Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 420 TT-LPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hh-hhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 98 67999999999999999999998 55 88899999999999999988765554455899999999998
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.4e-30 Score=259.58 Aligned_cols=364 Identities=18% Similarity=0.205 Sum_probs=279.1
Q ss_pred CcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccE
Q 006752 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (632)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~ 144 (632)
+-++-.|+++|.+..+.+|.....+++++-|.|...+ +. ..|+.++.|.+|++|.+++|. +.. ....+..++.|+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~-~vPeEL~~lqkLEHLs~~HN~-L~~-vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LE-QVPEELSRLQKLEHLSMAHNQ-LIS-VHGELSDLPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hh-hChHHHHHHhhhhhhhhhhhh-hHh-hhhhhccchhhHH
Confidence 4588999999987778899999999999999999876 54 467889999999999999994 433 3566788999999
Q ss_pred EEccCCCCCHh-HHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCC
Q 006752 145 LWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223 (632)
Q Consensus 145 L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 223 (632)
+.+..|++... +|..+..+..|+.|||++|++.. .|..+...+++-.|+|++|+|..+....+.+++-
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD---------- 151 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD---------- 151 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHh----------
Confidence 99999977543 45667789999999999999986 6788888899999999999998655555555544
Q ss_pred CCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch---hhhhcC
Q 006752 224 VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQM 300 (632)
Q Consensus 224 l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~---~~l~~~ 300 (632)
|-.|+|++|++..+|+.+..+..|++|.+++|.+....-. ....+.+|+.|.+++.+-+-. ..+..+
T Consensus 152 ---------LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr-QLPsmtsL~vLhms~TqRTl~N~Ptsld~l 221 (1255)
T KOG0444|consen 152 ---------LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR-QLPSMTSLSVLHMSNTQRTLDNIPTSLDDL 221 (1255)
T ss_pred ---------HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh-cCccchhhhhhhcccccchhhcCCCchhhh
Confidence 4455555566666666666666677777777665432111 122345566677777654433 567788
Q ss_pred CCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEE
Q 006752 301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380 (632)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 380 (632)
.+|..+|+|.|.+. ..|+.+..+ ++|+.|++++|+++...... +...+|++|++|.|+++ ..|.+++.++.|+.|
T Consensus 222 ~NL~dvDlS~N~Lp-~vPecly~l-~~LrrLNLS~N~iteL~~~~--~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLP-IVPECLYKL-RNLRRLNLSGNKITELNMTE--GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKL 296 (1255)
T ss_pred hhhhhccccccCCC-cchHHHhhh-hhhheeccCcCceeeeeccH--HHHhhhhhhccccchhc-cchHHHhhhHHHHHH
Confidence 89999999999987 678888888 99999999999998754433 45678999999999998 578889999999999
Q ss_pred EccCCccccc-cCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCc
Q 006752 381 DISNTDIKGM-YPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ 459 (632)
Q Consensus 381 ~Ls~n~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~ 459 (632)
.+.+|+++-. +|+. ++.+.+|+++..++
T Consensus 297 y~n~NkL~FeGiPSG---------------------------------------------------IGKL~~Levf~aan 325 (1255)
T KOG0444|consen 297 YANNNKLTFEGIPSG---------------------------------------------------IGKLIQLEVFHAAN 325 (1255)
T ss_pred HhccCcccccCCccc---------------------------------------------------hhhhhhhHHHHhhc
Confidence 9999987522 3553 45566777777777
Q ss_pred cCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceec
Q 006752 460 TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 511 (632)
Q Consensus 460 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~ 511 (632)
|.+.- .|+.++.|..|+.|.|+.|++.. .|+++.-++-|+.||+..|.-.
T Consensus 326 N~LEl-VPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 326 NKLEL-VPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ccccc-CchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCc
Confidence 77765 67777777778888888877766 6777777777888888777543
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=7.1e-32 Score=255.97 Aligned_cols=458 Identities=20% Similarity=0.201 Sum_probs=347.8
Q ss_pred HHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCch
Q 006752 27 WRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSS 106 (632)
Q Consensus 27 ~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~ 106 (632)
...+.+.+..+|..+.+-....-. -..++. ...++.+++++|.. ....+.+.++..|.+|++.+|+ +..
T Consensus 14 lnlsnr~l~~vp~~vyq~~~t~~e-----~e~wW~--qv~l~~lils~N~l--~~l~~dl~nL~~l~vl~~~~n~-l~~- 82 (565)
T KOG0472|consen 14 LNLSNRSLKDVPTEVYQINLTTGE-----GENWWE--QVDLQKLILSHNDL--EVLREDLKNLACLTVLNVHDNK-LSQ- 82 (565)
T ss_pred cccccchhhhccHHHHHHHhhccc-----hhhhhh--hcchhhhhhccCch--hhccHhhhcccceeEEEeccch-hhh-
Confidence 344567778888877763311100 111122 35689999999842 2344567789999999999998 553
Q ss_pred hHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccC
Q 006752 107 ALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV 186 (632)
Q Consensus 107 ~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~ 186 (632)
.+.+++.+..++.|+.++| .+. ..++.++.+.+|..+++++|.+.. .++.++.+..|+.++..+|+++. .|.++..
T Consensus 83 lp~aig~l~~l~~l~vs~n-~ls-~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~ 158 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSHN-KLS-ELPEQIGSLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQISS-LPEDMVN 158 (565)
T ss_pred CCHHHHHHHHHHHhhcccc-hHh-hccHHHhhhhhhhhhhccccceee-cCchHHHHhhhhhhhcccccccc-CchHHHH
Confidence 5668889999999999998 444 456778899999999999999875 56678888899999999999986 5778888
Q ss_pred CCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC----CCCCCCEEECCCCcccchhccccCCCCCcEEEee
Q 006752 187 LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLA 262 (632)
Q Consensus 187 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~----~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~ 262 (632)
+.+|..+++.+|+++...|..+. ++.|++|+...|.+..+| .+.+|..|++..|++..+| .+.+|+.|.+++++
T Consensus 159 ~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g 236 (565)
T KOG0472|consen 159 LSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVG 236 (565)
T ss_pred HHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhc
Confidence 99999999999999987777666 899999999999888766 6788889999999999998 78899999999999
Q ss_pred CCCCCchhhhhhhhcCCCccEEeccCCCCCch-hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcch
Q 006752 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA 341 (632)
Q Consensus 263 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 341 (632)
.|.+...|.. ....++++..||+..|++... ..+..+.+|++||+++|.+++ .|..+..+ .|+.|.+.+|.+...
T Consensus 237 ~N~i~~lpae-~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl--hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 237 ENQIEMLPAE-HLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-LPYSLGNL--HLKFLALEGNPLRTI 312 (565)
T ss_pred ccHHHhhHHH-HhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc-CCcccccc--eeeehhhcCCchHHH
Confidence 9998877765 345789999999999999988 677778899999999999985 44555554 788999999976542
Q ss_pred hHHHH-----------Hh-----------------------------cCCCCcEEEccCCCCChHHHHHHhcC--CCccE
Q 006752 342 GVGIL-----------AG-----------------------------HLPNLEILSLSGTQIDDYAISYMSMM--PSLKF 379 (632)
Q Consensus 342 ~~~~~-----------~~-----------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~--~~L~~ 379 (632)
--+.+ .. ...+.+.|++++-+++..+.+.|... .-...
T Consensus 313 Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~ 392 (565)
T KOG0472|consen 313 RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTS 392 (565)
T ss_pred HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEE
Confidence 21111 00 11245556666655554444444322 23566
Q ss_pred EEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccch-HHhhcCCcccccccC
Q 006752 380 IDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSL-TALQNLNHLERLNLE 458 (632)
Q Consensus 380 L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~l~~l~~L~~L~Ls 458 (632)
++++.|++... |..+.. ...-.+.+.++.|.+..+ ..++.+++|..|+|+
T Consensus 393 VnfskNqL~el-Pk~L~~----------------------------lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~ 443 (565)
T KOG0472|consen 393 VNFSKNQLCEL-PKRLVE----------------------------LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS 443 (565)
T ss_pred EecccchHhhh-hhhhHH----------------------------HHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence 66666666553 443211 123345566666666443 357889999999999
Q ss_pred ccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccC
Q 006752 459 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 536 (632)
Q Consensus 459 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~ 536 (632)
+|-+.+ +|..++.+..|+.||++.|+|.. .|..+..+..|+.+-.++|++....++.+.++..|.+||+.+|.+..
T Consensus 444 NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~ 519 (565)
T KOG0472|consen 444 NNLLND-LPEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ 519 (565)
T ss_pred cchhhh-cchhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh
Confidence 998888 78888899999999999999987 78888778888888888899999888889999999999999998744
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=3.1e-29 Score=261.41 Aligned_cols=439 Identities=20% Similarity=0.213 Sum_probs=324.4
Q ss_pred ccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEE
Q 006752 67 AEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLW 146 (632)
Q Consensus 67 l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~ 146 (632)
++.|+++.|-.++.. .++..+.-+|++|++++|+ +.. .+..+..+++|+.|+++.| .+... +....++.+|+++.
T Consensus 23 ~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~-~~~-fp~~it~l~~L~~ln~s~n-~i~~v-p~s~~~~~~l~~ln 97 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQ-ISS-FPIQITLLSHLRQLNLSRN-YIRSV-PSSCSNMRNLQYLN 97 (1081)
T ss_pred HHhhhccccccccCc-hHHhhheeeeEEeeccccc-ccc-CCchhhhHHHHhhcccchh-hHhhC-chhhhhhhcchhhe
Confidence 888888888555533 4555556569999999988 554 4556788889999999988 44433 45667889999999
Q ss_pred ccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCC
Q 006752 147 LSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK 226 (632)
Q Consensus 147 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 226 (632)
|.+|.+. ..|..+..+++|+.|++++|.+.. +|..+..+..++.+..++|.-.. .++... ++.+++..|.+..
T Consensus 98 L~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~----~lg~~~-ik~~~l~~n~l~~ 170 (1081)
T KOG0618|consen 98 LKNNRLQ-SLPASISELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQ----RLGQTS-IKKLDLRLNVLGG 170 (1081)
T ss_pred eccchhh-cCchhHHhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhh----hhcccc-chhhhhhhhhccc
Confidence 9988776 467788889999999999998865 56777788888888888882111 122222 6666666665543
Q ss_pred -----CCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCC
Q 006752 227 -----LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMK 301 (632)
Q Consensus 227 -----l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~ 301 (632)
+..+.. .|+|++|.+. ...+..+.+|+.+....|++..... ..++++.|+.++|.++....-....
T Consensus 171 ~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~~-----~g~~l~~L~a~~n~l~~~~~~p~p~ 241 (1081)
T KOG0618|consen 171 SFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSELEI-----SGPSLTALYADHNPLTTLDVHPVPL 241 (1081)
T ss_pred chhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccceEEe-----cCcchheeeeccCcceeeccccccc
Confidence 333333 5999999887 3445678888888888888776432 3578999999999998664444557
Q ss_pred CCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEE
Q 006752 302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 381 (632)
Q Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 381 (632)
+|++++++.|++.+ .|.++..+ .+|+.++..+|+++...... ....+|+.|++.+|++.. +|......+.|++|+
T Consensus 242 nl~~~dis~n~l~~-lp~wi~~~-~nle~l~~n~N~l~~lp~ri--~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-LPEWIGAC-ANLEALNANHNRLVALPLRI--SRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLD 316 (1081)
T ss_pred cceeeecchhhhhc-chHHHHhc-ccceEecccchhHHhhHHHH--hhhhhHHHHHhhhhhhhh-CCCcccccceeeeee
Confidence 89999999999986 44777776 99999999999996544433 347899999999998874 444466789999999
Q ss_pred ccCCccccccCCCccchhhhhhhhhhhhhceeccccccccc--cccccchhhhccccccccc--chHHhhcCCccccccc
Q 006752 382 ISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFP--SSVLAGFIQQVGAETDLVL--SLTALQNLNHLERLNL 457 (632)
Q Consensus 382 Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~~~~~~l~--~~~~l~~l~~L~~L~L 457 (632)
|..|++....+..+......+..+....+ ..-.+| .......++.|.+.+|.+. -++.+.+.++|++|+|
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n------~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSN------KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL 390 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhc------cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence 99999987633222111111222222111 111122 1123456788888888884 3468899999999999
Q ss_pred CccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccCh
Q 006752 458 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE 537 (632)
Q Consensus 458 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~ 537 (632)
++|++.......+.+++.|+.|+||+|+++. +|..+..++.|++|...+|++... | .+..++.|+.+|+|.|.+...
T Consensus 391 syNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 391 SYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred cccccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCceeec-h-hhhhcCcceEEecccchhhhh
Confidence 9999998777778899999999999999998 679999999999999999999985 5 788899999999999998443
Q ss_pred HHH
Q 006752 538 DAI 540 (632)
Q Consensus 538 ~~~ 540 (632)
..+
T Consensus 468 ~l~ 470 (1081)
T KOG0618|consen 468 TLP 470 (1081)
T ss_pred hhh
Confidence 333
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=1.5e-26 Score=219.65 Aligned_cols=433 Identities=18% Similarity=0.122 Sum_probs=264.0
Q ss_pred HHHHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCC
Q 006752 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT 104 (632)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~ 104 (632)
-.++|+.+++..+|.++|+ ..+.++|..| .++...+.+|+.+++||.|+|++|. |+
T Consensus 49 ~~VdCr~~GL~eVP~~LP~----------------------~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~-Is 104 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPP----------------------ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNN-IS 104 (498)
T ss_pred ceEEccCCCcccCcccCCC----------------------cceEEEeccC-CcccCChhhccchhhhceecccccc-hh
Confidence 4578899999999999887 6888999998 6887788999999999999999999 99
Q ss_pred chhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhc
Q 006752 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSL 184 (632)
Q Consensus 105 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l 184 (632)
.+.+++|.+++.|.+|-+.++..+++..-..|+++..|+.|.+.-|++.....+.|..+++|..|.+..|.+....-..|
T Consensus 105 ~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf 184 (498)
T KOG4237|consen 105 FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF 184 (498)
T ss_pred hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccc
Confidence 99999999999999998888558999888899999999999999999998888899999999999999988876544467
Q ss_pred cCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEE---Ee
Q 006752 185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKI---SL 261 (632)
Q Consensus 185 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L---~l 261 (632)
..+..++.+.+..|.+-. ..+++.+.... ..+.+ .++...-.....+.+.++..+...-+.+. ++.+ ..
T Consensus 185 ~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-a~~~i-etsgarc~~p~rl~~~Ri~q~~a~kf~c~-~esl~s~~~ 256 (498)
T KOG4237|consen 185 QGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-AMNPI-ETSGARCVSPYRLYYKRINQEDARKFLCS-LESLPSRLS 256 (498)
T ss_pred cchhccchHhhhcCcccc-----ccccchhhhHH-hhchh-hcccceecchHHHHHHHhcccchhhhhhh-HHhHHHhhc
Confidence 777788888777765321 12222221110 00000 01111111111222222222222111111 1111 01
Q ss_pred eCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcch
Q 006752 262 AGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA 341 (632)
Q Consensus 262 ~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 341 (632)
+.+....+.+. ..|..+++|+.|++++|++++....+|.+. ..+++|.+..|++...
T Consensus 257 ~~d~~d~~cP~----------------------~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~-a~l~eL~L~~N~l~~v 313 (498)
T KOG4237|consen 257 SEDFPDSICPA----------------------KCFKKLPNLRKLNLSNNKITRIEDGAFEGA-AELQELYLTRNKLEFV 313 (498)
T ss_pred cccCcCCcChH----------------------HHHhhcccceEeccCCCccchhhhhhhcch-hhhhhhhcCcchHHHH
Confidence 11111112222 346666777777777777776666666666 6777777777776655
Q ss_pred hHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccccc
Q 006752 342 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIF 421 (632)
Q Consensus 342 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (632)
....| .++..|+.|+|.+|+|+...|.+|..+..|.+|++-.|.+.-.---.+ +-..+.. .+.+..
T Consensus 314 ~~~~f-~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w--l~~Wlr~-----------~~~~~~ 379 (498)
T KOG4237|consen 314 SSGMF-QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW--LGEWLRK-----------KSVVGN 379 (498)
T ss_pred HHHhh-hccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHH--HHHHHhh-----------CCCCCC
Confidence 44444 556777777777777777777777777777777776665532211000 0000000 011122
Q ss_pred ccccccchhhhcccccccccch--------------HHhhcCCcccccccCccCCCCCccccccCcccccccccccccCC
Q 006752 422 PSSVLAGFIQQVGAETDLVLSL--------------TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 487 (632)
Q Consensus 422 ~~~~~~~~l~~l~~~~~~l~~~--------------~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 487 (632)
|...-.+.+..+.++...+... ..-..|+-+.+.-=-.|......|..+ ...-..|++.+|.++
T Consensus 380 ~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn~~~ 457 (498)
T KOG4237|consen 380 PRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGNAIT 457 (498)
T ss_pred CCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccchhc
Confidence 3333333333333332222110 011122223222222222222234332 234577888888888
Q ss_pred CcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCC
Q 006752 488 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 532 (632)
Q Consensus 488 ~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N 532 (632)
.+..+ .+.+| .+|+++|+++...-..|.++..|.+|-++.|
T Consensus 458 ~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 458 SVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccCHH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 74433 55667 8888888888887888888888888888775
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=3.5e-21 Score=224.35 Aligned_cols=153 Identities=22% Similarity=0.208 Sum_probs=69.7
Q ss_pred HHhccCCCccEEEcCCCC-----CCCchhHHhhhCC-CCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHH
Q 006752 84 AYLGAFRYLRSLNVADCR-----RVTSSALWALTGM-TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGI 157 (632)
Q Consensus 84 ~~~~~~~~L~~L~L~~~~-----~i~~~~~~~l~~l-~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 157 (632)
..|.++++|+.|.+.++. .+....+..|..+ ++|+.|++.++ .+... +..+ ...+|++|++.++.+.. .+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~l-P~~f-~~~~L~~L~L~~s~l~~-L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCM-PSNF-RPENLVKLQMQGSKLEK-LW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCC-CCcC-CccCCcEEECcCccccc-cc
Confidence 345555666666554332 0111122223333 24555555554 22221 2222 34555555555555543 23
Q ss_pred HHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCC-CCCCCC---CCCCC
Q 006752 158 ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT-GVTKLP---NISSL 233 (632)
Q Consensus 158 ~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~l~---~l~~L 233 (632)
..+..+++|+.|+++++.....+| .++.+++|++|++++|......|..+..+++|+.|++++| .+..+| ++++|
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL 706 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL 706 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCC
Confidence 334455555555555544222233 2445555555555555444444555555555555555543 233332 23444
Q ss_pred CEEECCCC
Q 006752 234 ECLNLSNC 241 (632)
Q Consensus 234 ~~L~L~~~ 241 (632)
+.|++++|
T Consensus 707 ~~L~Lsgc 714 (1153)
T PLN03210 707 YRLNLSGC 714 (1153)
T ss_pred CEEeCCCC
Confidence 44444444
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.5e-20 Score=219.04 Aligned_cols=333 Identities=17% Similarity=0.136 Sum_probs=204.6
Q ss_pred HhhhcCCCCccEEEccCCCC------CHhHHHHhcCCC-CCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhh
Q 006752 133 MKHLLSISTLEKLWLSETGL------TADGIALLSSLQ-NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205 (632)
Q Consensus 133 ~~~l~~l~~L~~L~L~~n~i------~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 205 (632)
..+|.++++|+.|.+..+.. ....|..|..++ +|+.|.+.++.+.. .|..+ ...+|++|++.++++.. .+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~~-L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLEK-LW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcC-CccCCcEEECcCccccc-cc
Confidence 34566677777777754422 112333444443 57777777766644 34444 35677777777777653 34
Q ss_pred HhhcCCCCCcEEEccCCC-CCC---CCCCCCCCEEECCCCc-ccchhccccCCCCCcEEEeeCCC-CCchhhhhhhhcCC
Q 006752 206 AVLKMFPRLSFLNLAWTG-VTK---LPNISSLECLNLSNCT-IDSILEGNENKAPLAKISLAGTT-FINEREAFLYIETS 279 (632)
Q Consensus 206 ~~l~~l~~L~~L~l~~n~-l~~---l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~ 279 (632)
..+..+++|+.|+++++. +.. +..+++|++|++++|. +..+|..+..+++|+.|++++|. +..+|... .++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~ 704 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLK 704 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CCC
Confidence 455667777777777653 333 3356777777777764 44677777777777778777764 33444322 567
Q ss_pred CccEEeccCCCCCch-hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcch------hHHHHHhcCCC
Q 006752 280 LLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA------GVGILAGHLPN 352 (632)
Q Consensus 280 ~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~~~~ 352 (632)
+|+.|++++|..... +. ...+|++|++++|.+.. .|..+ .+ ++|++|.+.++..... .+......+++
T Consensus 705 sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~~-lP~~~-~l-~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIEE-FPSNL-RL-ENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCEEeCCCCCCcccccc--ccCCcCeeecCCCcccc-ccccc-cc-cccccccccccchhhccccccccchhhhhcccc
Confidence 777777777753222 22 23567778887777653 33332 22 6777777766431110 01111133568
Q ss_pred CcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhh
Q 006752 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQ 432 (632)
Q Consensus 353 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (632)
|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------- 822 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------- 822 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------------------------------------
Confidence 8888888887666777788888888888888876555556521
Q ss_pred cccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCc-eec
Q 006752 433 VGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDA-VLT 511 (632)
Q Consensus 433 l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N-~l~ 511 (632)
++++|+.|++++|......|.. .++|+.|+|++|.++. +|.++..+++|++|++++| ++.
T Consensus 823 ---------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 823 ---------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred ---------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcC
Confidence 3567777777776443333332 3567777777777775 5667777777777777774 344
Q ss_pred cCCCCCCCCCCCcceEecCCCc
Q 006752 512 NSGLGSFKPPRSLKLLDLHGGW 533 (632)
Q Consensus 512 ~~~~~~l~~~~~L~~L~l~~N~ 533 (632)
. +|..+..+++|+.+++++|.
T Consensus 884 ~-l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 884 R-VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred c-cCcccccccCCCeeecCCCc
Confidence 3 45556666777777777775
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=4.2e-23 Score=196.38 Aligned_cols=106 Identities=24% Similarity=0.242 Sum_probs=101.2
Q ss_pred HHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCC
Q 006752 444 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS 523 (632)
Q Consensus 444 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~ 523 (632)
..|.++++|++|+|++|+++++.+.+|.+...++.|.|..|+|..+...+|.++..|+.|+|.+|+|+...|.+|....+
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 47999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred cceEecCCCcccChHHHHHHHHHcCC
Q 006752 524 LKLLDLHGGWLLTEDAILQFCKMHPR 549 (632)
Q Consensus 524 L~~L~l~~N~l~~~~~~~~~~~~~~~ 549 (632)
|.+|.+-.|+|.|.|.+.|+..|+..
T Consensus 348 l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 348 LSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred eeeeehccCcccCccchHHHHHHHhh
Confidence 99999999999999999999888753
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=1.2e-20 Score=204.16 Aligned_cols=193 Identities=18% Similarity=0.180 Sum_probs=86.9
Q ss_pred CCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCC-CCCCCEEECCCCccc
Q 006752 166 LSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTID 244 (632)
Q Consensus 166 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-l~~L~~L~L~~~~l~ 244 (632)
-..|+++.+.++. +|..+. ++|+.|++.+|+++.. |. ..++|++|++++|.++.+|. .++|+.|++++|.+.
T Consensus 203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT 275 (788)
T ss_pred CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcccCcccccceeeccCCchh
Confidence 4445555555542 333332 2455555555555432 21 13455555555555554442 244555555555555
Q ss_pred chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhc
Q 006752 245 SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACV 324 (632)
Q Consensus 245 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 324 (632)
.+|.. .++|+.|++++|+++.+|.. .++|+.|++++|.++.++.+ ..+|+.|++++|.+++ +|. .
T Consensus 276 ~Lp~l---p~~L~~L~Ls~N~Lt~LP~~-----p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~-LP~----l 340 (788)
T PRK15387 276 HLPAL---PSGLCKLWIFGNQLTSLPVL-----PPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTS-LPT----L 340 (788)
T ss_pred hhhhc---hhhcCEEECcCCcccccccc-----ccccceeECCCCccccCCCC--cccccccccccCcccc-ccc----c
Confidence 44432 13455555555555544321 24455555555555444221 1234555555555543 121 1
Q ss_pred CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccc
Q 006752 325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG 389 (632)
Q Consensus 325 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~ 389 (632)
..+|+.|++++|+++.... ..++|+.|++++|++++ +|. ...+|+.|++++|++++
T Consensus 341 p~~Lq~LdLS~N~Ls~LP~-----lp~~L~~L~Ls~N~L~~-LP~---l~~~L~~LdLs~N~Lt~ 396 (788)
T PRK15387 341 PSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS 396 (788)
T ss_pred ccccceEecCCCccCCCCC-----CCcccceehhhcccccc-Ccc---cccccceEEecCCcccC
Confidence 1345555555555543211 12345555555555543 221 12345555555555553
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=9.2e-21 Score=204.93 Aligned_cols=266 Identities=20% Similarity=0.208 Sum_probs=207.7
Q ss_pred CCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEc
Q 006752 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219 (632)
Q Consensus 140 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 219 (632)
..-..|+++++.++. +|..+. ++|+.|++.+|.++. +|. ..++|++|++++|+++.. |. ..++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence 456788999998885 455443 478999999998876 332 357899999999998854 32 2468899999
Q ss_pred cCCCCCCCCCC-CCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhh
Q 006752 220 AWTGVTKLPNI-SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLT 298 (632)
Q Consensus 220 ~~n~l~~l~~l-~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~ 298 (632)
++|.++.++.. .+|+.|++++|+++.+|.. .++|+.|++++|.+.+++.. ...|+.|++++|.++.++.+.
T Consensus 270 s~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l-----p~~L~~L~Ls~N~L~~LP~lp 341 (788)
T PRK15387 270 FSNPLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL-----PSELCKLWAYNNQLTSLPTLP 341 (788)
T ss_pred cCCchhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC-----cccccccccccCccccccccc
Confidence 99998887753 5789999999999988763 46899999999999887642 256888999999998775432
Q ss_pred cCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCcc
Q 006752 299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 378 (632)
Q Consensus 299 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 378 (632)
.+|++|++++|++++. |. ...+|+.|++++|+++.. +. ..++|+.|++++|++++. |. ..++|+
T Consensus 342 --~~Lq~LdLS~N~Ls~L-P~----lp~~L~~L~Ls~N~L~~L-P~----l~~~L~~LdLs~N~Lt~L-P~---l~s~L~ 405 (788)
T PRK15387 342 --SGLQELSVSDNQLASL-PT----LPSELYKLWAYNNRLTSL-PA----LPSGLKELIVSGNRLTSL-PV---LPSELK 405 (788)
T ss_pred --cccceEecCCCccCCC-CC----CCcccceehhhccccccC-cc----cccccceEEecCCcccCC-CC---cccCCC
Confidence 5899999999999853 32 126899999999998863 32 246899999999999853 32 246899
Q ss_pred EEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccC
Q 006752 379 FIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLE 458 (632)
Q Consensus 379 ~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls 458 (632)
.|++++|.+++ +|.. ..+|+.|+++
T Consensus 406 ~LdLS~N~Lss-IP~l------------------------------------------------------~~~L~~L~Ls 430 (788)
T PRK15387 406 ELMVSGNRLTS-LPML------------------------------------------------------PSGLLSLSVY 430 (788)
T ss_pred EEEccCCcCCC-CCcc------------------------------------------------------hhhhhhhhhc
Confidence 99999999986 3541 1367889999
Q ss_pred ccCCCCCccccccCcccccccccccccCCCcchhhhcc
Q 006752 459 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 496 (632)
Q Consensus 459 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 496 (632)
+|+++. +|..+..+++|+.|+|++|++++..+..+..
T Consensus 431 ~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 431 RNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred cCcccc-cChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 999986 7888999999999999999999988877643
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=8.7e-19 Score=177.81 Aligned_cols=278 Identities=21% Similarity=0.210 Sum_probs=176.0
Q ss_pred EEEcCCCCCCC-chhHHhhhCCCCcCEEeccCCCCCChhhHh----hhcCCCCccEEEccCCCCC------HhHHHHhcC
Q 006752 94 SLNVADCRRVT-SSALWALTGMTCLKELDLSRCVKVTDAGMK----HLLSISTLEKLWLSETGLT------ADGIALLSS 162 (632)
Q Consensus 94 ~L~L~~~~~i~-~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~----~l~~l~~L~~L~L~~n~i~------~~~~~~~~~ 162 (632)
.|+|..+. ++ ......+..++.|++|++++| .+++.... .+...++|++++++++.+. ...+..+..
T Consensus 2 ~l~L~~~~-l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGEL-LKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCc-ccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 46676666 55 334445567778999999988 56554333 3346677888888888776 223456667
Q ss_pred CCCCCEEEcCCCCCChHHHHhccCCCC---ccEEEecCCCCCchhh----HhhcCC-CCCcEEEccCCCCCCCCCCCCCC
Q 006752 163 LQNLSVLDLGGLPVTDLVLRSLQVLTK---LEYLDLWGSQVSNRGA----AVLKMF-PRLSFLNLAWTGVTKLPNISSLE 234 (632)
Q Consensus 163 l~~L~~L~L~~n~i~~~~~~~l~~l~~---L~~L~L~~n~l~~~~~----~~l~~l-~~L~~L~l~~n~l~~l~~l~~L~ 234 (632)
+++|+.|++++|.+.+..+..+..+.+ |++|++++|.+++... ..+..+ ++|+.|++++|.++.-.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~------ 153 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS------ 153 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH------
Confidence 788888888888877555555544444 8888888887764322 233334 44444444444433100
Q ss_pred EEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhh---hhhhcCCCccEEeccCCCCCch------hhhhcCCCCCe
Q 006752 235 CLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA---FLYIETSLLSFLDVSNSSLSRF------CFLTQMKALEH 305 (632)
Q Consensus 235 ~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~ls~n~l~~~------~~l~~~~~L~~ 305 (632)
...++..+..+++|++|++++|.+.+.... ..+..+++|++|++++|.+.+. ..+..+++|++
T Consensus 154 --------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 154 --------CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225 (319)
T ss_pred --------HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence 002333444556677777777766642111 1123446777777777777543 34566788999
Q ss_pred eeccCCCCCchHHHHHHhcC----CCCcEEEccCCcCcchhHHHH---HhcCCCCcEEEccCCCCChHHHHHHh----cC
Q 006752 306 LDLSSSMIGDDSVEMVACVG----ANLRNLNLSNTRFSSAGVGIL---AGHLPNLEILSLSGTQIDDYAISYMS----MM 374 (632)
Q Consensus 306 L~l~~n~l~~~~~~~~~~~~----~~L~~L~l~~n~l~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~l~----~~ 374 (632)
|++++|.+++..+..+...+ +.|++|++++|.+++.....+ ...+++|+++++++|.+++.....++ ..
T Consensus 226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~ 305 (319)
T cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEP 305 (319)
T ss_pred EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhc
Confidence 99999988876665555432 689999999998875443322 24457899999999999876444333 33
Q ss_pred -CCccEEEccCCcc
Q 006752 375 -PSLKFIDISNTDI 387 (632)
Q Consensus 375 -~~L~~L~Ls~n~i 387 (632)
+.|+++++.+|.+
T Consensus 306 ~~~~~~~~~~~~~~ 319 (319)
T cd00116 306 GNELESLWVKDDSF 319 (319)
T ss_pred CCchhhcccCCCCC
Confidence 6888998888753
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=2.9e-18 Score=174.02 Aligned_cols=278 Identities=26% Similarity=0.279 Sum_probs=165.5
Q ss_pred EEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHH----hhhCCCCcCEEeccCCCCCC------hhhHhhhcC
Q 006752 69 AIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALW----ALTGMTCLKELDLSRCVKVT------DAGMKHLLS 138 (632)
Q Consensus 69 ~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~----~l~~l~~L~~L~L~~~~~l~------~~~~~~l~~ 138 (632)
.|+|+.+...+..+...+..+++|++|++++|. +++.... .+...+.|++|+++++ .+. ...+..+..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHh
Confidence 466766654446667777777888888888887 6544332 3446677888888887 344 122345567
Q ss_pred CCCccEEEccCCCCCHhHHHHhcCCCC---CCEEEcCCCCCChH----HHHhccCC-CCccEEEecCCCCCchh----hH
Q 006752 139 ISTLEKLWLSETGLTADGIALLSSLQN---LSVLDLGGLPVTDL----VLRSLQVL-TKLEYLDLWGSQVSNRG----AA 206 (632)
Q Consensus 139 l~~L~~L~L~~n~i~~~~~~~~~~l~~---L~~L~L~~n~i~~~----~~~~l~~l-~~L~~L~L~~n~l~~~~----~~ 206 (632)
+++|++|++++|.+....+..+..+.+ |++|++++|++.+. +...+..+ ++|+.|++++|.+++.. +.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 788888888888887655555544444 88888888888742 23345566 88888888888887433 33
Q ss_pred hhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhh---hhhhcCCCccE
Q 006752 207 VLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA---FLYIETSLLSF 283 (632)
Q Consensus 207 ~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~ 283 (632)
.+..+++|++|++++|.+++- .+..++..+..+++|+.|++++|.+.+.... ..+..+++|++
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~--------------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDA--------------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225 (319)
T ss_pred HHHhCCCcCEEECcCCCCchH--------------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence 445556666666666654420 0001222222334555555555544432211 12234556666
Q ss_pred EeccCCCCCch--hhh-h----cCCCCCeeeccCCCCCchHHHHH----HhcCCCCcEEEccCCcCcchhHHHHH---hc
Q 006752 284 LDVSNSSLSRF--CFL-T----QMKALEHLDLSSSMIGDDSVEMV----ACVGANLRNLNLSNTRFSSAGVGILA---GH 349 (632)
Q Consensus 284 L~ls~n~l~~~--~~l-~----~~~~L~~L~l~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~---~~ 349 (632)
|++++|.+++. ..+ . ..+.|++|++++|.+++.....+ ... ++|+++++++|.+++.....+. ..
T Consensus 226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~~~~~~~~~~~~~~ 304 (319)
T cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFGEEGAQLLAESLLE 304 (319)
T ss_pred EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCCcHHHHHHHHHHHhh
Confidence 66666666542 111 1 23678888888888775443333 223 6788888888888765333222 22
Q ss_pred C-CCCcEEEccCCCC
Q 006752 350 L-PNLEILSLSGTQI 363 (632)
Q Consensus 350 ~-~~L~~L~L~~n~l 363 (632)
. +.|+++++.+|.+
T Consensus 305 ~~~~~~~~~~~~~~~ 319 (319)
T cd00116 305 PGNELESLWVKDDSF 319 (319)
T ss_pred cCCchhhcccCCCCC
Confidence 3 5788888877753
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=7.3e-18 Score=183.85 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=39.0
Q ss_pred CcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCC----CCCCCcc
Q 006752 450 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF----KPPRSLK 525 (632)
Q Consensus 450 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l----~~~~~L~ 525 (632)
++|+.|++++|+++. +|..+ .++|+.|+|++|+++.+ |..+. .+|+.|++++|++++. |..+ ...+.+.
T Consensus 346 ~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~L-P~~l~--~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~ 418 (754)
T PRK15370 346 PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNL-PENLP--AALQIMQASRNNLVRL-PESLPHFRGEGPQPT 418 (754)
T ss_pred CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCC-CHhHH--HHHHHHhhccCCcccC-chhHHHHhhcCCCcc
Confidence 355555565555553 33332 24555566666655543 22222 2455566666655532 3222 2235556
Q ss_pred eEecCCCcc
Q 006752 526 LLDLHGGWL 534 (632)
Q Consensus 526 ~L~l~~N~l 534 (632)
.+++.+|++
T Consensus 419 ~L~L~~Npl 427 (754)
T PRK15370 419 RIIVEYNPF 427 (754)
T ss_pred EEEeeCCCc
Confidence 666666665
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=3.3e-17 Score=178.72 Aligned_cols=202 Identities=19% Similarity=0.244 Sum_probs=119.6
Q ss_pred CCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCC--CCCCCEEECCCC
Q 006752 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN--ISSLECLNLSNC 241 (632)
Q Consensus 164 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~--l~~L~~L~L~~~ 241 (632)
.+...|+++++.++. +|..+. +.|+.|++++|+++.. |..+. ++|+.|++++|.++.++. ...|+.|++++|
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccccCChhhhccccEEECcCC
Confidence 456788888877765 344342 4688888888887753 33332 477888888877777662 246777777777
Q ss_pred cccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHH
Q 006752 242 TIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMV 321 (632)
Q Consensus 242 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 321 (632)
.+..+|..+. ++|+.|++++|++..+|..+ .++|+.|++++|.++.++.. ..++|+.|++++|.++.. |..+
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l----~~sL~~L~Ls~N~Lt~LP~~-lp~sL~~L~Ls~N~Lt~L-P~~l 323 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPENL----PEELRYLSVYDNSIRTLPAH-LPSGITHLNVQSNSLTAL-PETL 323 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCcccccc----CCCCcEEECCCCccccCccc-chhhHHHHHhcCCccccC-Cccc
Confidence 7777666543 46777777777776655432 24667777777766654211 113566666666666532 2211
Q ss_pred HhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccc
Q 006752 322 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG 389 (632)
Q Consensus 322 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~ 389 (632)
.++|+.|++++|.++.. +..+ +++|+.|++++|+++. +|..+ .++|+.|++++|+++.
T Consensus 324 ---~~sL~~L~Ls~N~Lt~L-P~~l---~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 324 ---PPGLKTLEAGENALTSL-PASL---PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN 381 (754)
T ss_pred ---cccceeccccCCccccC-Chhh---cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC
Confidence 14566666666666542 2222 3466666666666553 23322 2456666666666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=8.7e-16 Score=130.17 Aligned_cols=183 Identities=21% Similarity=0.268 Sum_probs=140.0
Q ss_pred hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcC
Q 006752 295 CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM 374 (632)
Q Consensus 295 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 374 (632)
+.+-.+.+.+.|.+++|+++. .|..++.+ .+|+.|++++|++....... +.+++|+.|+++-|++. ..|..|+.+
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~-vppnia~l-~nlevln~~nnqie~lp~~i--ssl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTV-VPPNIAEL-KNLEVLNLSNNQIEELPTSI--SSLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred ccccchhhhhhhhcccCceee-cCCcHHHh-hhhhhhhcccchhhhcChhh--hhchhhhheecchhhhh-cCccccCCC
Confidence 344455677778888888874 44556666 78888888888887654433 56888889988888875 567788899
Q ss_pred CCccEEEccCCccccc-cCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCccc
Q 006752 375 PSLKFIDISNTDIKGM-YPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLE 453 (632)
Q Consensus 375 ~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~ 453 (632)
+.|+.||+.+|++... .|. .|-.+..|+
T Consensus 102 p~levldltynnl~e~~lpg---------------------------------------------------nff~m~tlr 130 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPG---------------------------------------------------NFFYMTTLR 130 (264)
T ss_pred chhhhhhccccccccccCCc---------------------------------------------------chhHHHHHH
Confidence 9999999999888654 233 345567899
Q ss_pred ccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCC---CCcceEecC
Q 006752 454 RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP---RSLKLLDLH 530 (632)
Q Consensus 454 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~---~~L~~L~l~ 530 (632)
.|+|++|.+.- +|..++++++|+.|.+..|.+.. .|..++.++.|++|.+.+|+++-. |..++.+ .+=+.+.+.
T Consensus 131 alyl~dndfe~-lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~vl-ppel~~l~l~~~k~v~r~E 207 (264)
T KOG0617|consen 131 ALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLTVL-PPELANLDLVGNKQVMRME 207 (264)
T ss_pred HHHhcCCCccc-CChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceeeec-ChhhhhhhhhhhHHHHhhh
Confidence 99999999887 67888999999999999999887 788999999999999999999876 5555544 233456667
Q ss_pred CCcccC
Q 006752 531 GGWLLT 536 (632)
Q Consensus 531 ~N~l~~ 536 (632)
+|+++.
T Consensus 208 ~NPwv~ 213 (264)
T KOG0617|consen 208 ENPWVN 213 (264)
T ss_pred hCCCCC
Confidence 777744
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.45 E-value=7.5e-14 Score=134.96 Aligned_cols=324 Identities=22% Similarity=0.262 Sum_probs=186.3
Q ss_pred hhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHH-HHhccCCCccEEEcCCCCCCCchhH
Q 006752 30 QRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWM-AYLGAFRYLRSLNVADCRRVTSSAL 108 (632)
Q Consensus 30 ~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~i~~~~~ 108 (632)
++..+...+.+++..++..+...- ...++.|.++|+..+..... .....|+++++|++.+|..+++...
T Consensus 113 q~idL~t~~rDv~g~VV~~~~~Rc----------gg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~ 182 (483)
T KOG4341|consen 113 QHIDLFTFQRDVDGGVVENMISRC----------GGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL 182 (483)
T ss_pred eeeehhcchhcCCCcceehHhhhh----------ccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH
Confidence 445566666665554444332221 13588899999876655443 3446889999999999988888888
Q ss_pred Hhhh-CCCCcCEEeccCCCCCChhhHhhhc-CCCCccEEEccCC-CCCHhHHH-HhcCCCCCCEEEcCCCCCChH-HHHh
Q 006752 109 WALT-GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSET-GLTADGIA-LLSSLQNLSVLDLGGLPVTDL-VLRS 183 (632)
Q Consensus 109 ~~l~-~l~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~L~~n~i~~~-~~~~ 183 (632)
..++ .|++|++|++..|..+++...+.++ +|++|++++++.| .+++.... .+.+++.++.+.+.||.-.+. ....
T Consensus 183 ~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~ 262 (483)
T KOG4341|consen 183 LSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLK 262 (483)
T ss_pred HHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHH
Confidence 8887 7899999999998888888887666 7899999999988 45543332 345677777777776642221 1111
Q ss_pred c-cCCCCccEEEecCC-CCCchhhHhh-cCCCCCcEEEccCCC-CCCCCCCCCCCEEECCCCcccchhccc-cCCCCCcE
Q 006752 184 L-QVLTKLEYLDLWGS-QVSNRGAAVL-KMFPRLSFLNLAWTG-VTKLPNISSLECLNLSNCTIDSILEGN-ENKAPLAK 258 (632)
Q Consensus 184 l-~~l~~L~~L~L~~n-~l~~~~~~~l-~~l~~L~~L~l~~n~-l~~l~~l~~L~~L~L~~~~l~~~~~~~-~~~~~L~~ 258 (632)
. +.+..+..+++.+| .+++.....+ ..+..|+.+..+++. +++ .....+ .++++|+.
T Consensus 263 ~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d------------------~~l~aLg~~~~~L~~ 324 (483)
T KOG4341|consen 263 AAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD------------------EVLWALGQHCHNLQV 324 (483)
T ss_pred HhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch------------------HHHHHHhcCCCceEE
Confidence 1 34555666666565 3444432222 234445555544431 111 011111 14445555
Q ss_pred EEeeCCC-CCchhhhhhhhcCCCccEEeccCCCCCch----hhhhcCCCCCeeeccCCC-CCchHHHHHHhc---CCCCc
Q 006752 259 ISLAGTT-FINEREAFLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSM-IGDDSVEMVACV---GANLR 329 (632)
Q Consensus 259 L~l~~n~-~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~---~~~L~ 329 (632)
+.+.+|+ +++........+++.|+.+++..+..... ..-.+++.|+.+.++.|. +++.+...+... ...++
T Consensus 325 l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~ 404 (483)
T KOG4341|consen 325 LELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLE 404 (483)
T ss_pred EeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccc
Confidence 5555443 22222222233455566666655544332 233456777777777664 444433333221 15677
Q ss_pred EEEccCCcCcchhHHHHHhcCCCCcEEEccCCC-CChHHHHHHh-cCCCccEEE
Q 006752 330 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ-IDDYAISYMS-MMPSLKFID 381 (632)
Q Consensus 330 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~-~~~~L~~L~ 381 (632)
.+.+++++......-.....|++|+.+++-+++ ++......+. ++++++..-
T Consensus 405 ~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 405 VLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred eeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 778888875554444444667888888887765 4444444443 667666654
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.41 E-value=1.6e-12 Score=123.25 Aligned_cols=247 Identities=23% Similarity=0.241 Sum_probs=153.6
Q ss_pred hhhcCCCCccEEEccCCCCCHhHH----HHhcCCCCCCEEEcCCCC---CChHHHHh-------ccCCCCccEEEecCCC
Q 006752 134 KHLLSISTLEKLWLSETGLTADGI----ALLSSLQNLSVLDLGGLP---VTDLVLRS-------LQVLTKLEYLDLWGSQ 199 (632)
Q Consensus 134 ~~l~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~---i~~~~~~~-------l~~l~~L~~L~L~~n~ 199 (632)
+.+..+..+++++|++|.+...-. ..+.+.++|+..++++-. ....+|.+ +..+++|++++||+|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 344567788888888888876443 345566788888777522 22333433 3455677777777776
Q ss_pred CCchhhHh----hcCCCCCcEEEccCCCCCCCCCC---CCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhh-
Q 006752 200 VSNRGAAV----LKMFPRLSFLNLAWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINERE- 271 (632)
Q Consensus 200 l~~~~~~~----l~~l~~L~~L~l~~n~l~~l~~l---~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~- 271 (632)
+....+.. +.++..|++|.|.+|.+...+.- ..|..|. ....+...+.|+.+....|++.+.+.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--------VNKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--------HHhccCCCcceEEEEeeccccccccHH
Confidence 65444433 34455555555555554431100 0000000 11223355677777777777755332
Q ss_pred --hhhhhcCCCccEEeccCCCCCch------hhhhcCCCCCeeeccCCCCCchHHHHHHhcC---CCCcEEEccCCcCcc
Q 006752 272 --AFLYIETSLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACVG---ANLRNLNLSNTRFSS 340 (632)
Q Consensus 272 --~~~~~~~~~L~~L~ls~n~l~~~------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~L~~L~l~~n~l~~ 340 (632)
...+...+.|+.+.++.|.+... ..+..|++|+.||+.+|.++..+...++... +.|++|++++|.+..
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 22345567788888888777543 5677888888888888888765544443322 678888999988876
Q ss_pred hhHHH----HHhcCCCCcEEEccCCCCChHHHHH----HhcCCCccEEEccCCccc
Q 006752 341 AGVGI----LAGHLPNLEILSLSGTQIDDYAISY----MSMMPSLKFIDISNTDIK 388 (632)
Q Consensus 341 ~~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~----l~~~~~L~~L~Ls~n~i~ 388 (632)
.+... +....|+|+.|.+.+|.++...... +...+.|..|+|++|++.
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 55443 3345788999999999887544333 346788999999999884
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=9.6e-15 Score=123.90 Aligned_cols=153 Identities=24% Similarity=0.346 Sum_probs=133.4
Q ss_pred CCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhh
Q 006752 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCF 405 (632)
Q Consensus 326 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 405 (632)
..++.|.+++|+++...|.. ..+.+|+.|++++|++++ .|..++.+++|+.|+++-|++.-. |.
T Consensus 33 s~ITrLtLSHNKl~~vppni--a~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~l-pr------------ 96 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNI--AELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNIL-PR------------ 96 (264)
T ss_pred hhhhhhhcccCceeecCCcH--HHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhcC-cc------------
Confidence 67888999999999776654 568999999999999974 566799999999999999998754 66
Q ss_pred hhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCC-CccccccCcccccccccccc
Q 006752 406 MIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-ATLFPLSTFKELIHLSLRNA 484 (632)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n 484 (632)
.|+.++.|++|||.+|++.. ..|..|..++.|+.|+|++|
T Consensus 97 ---------------------------------------gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn 137 (264)
T KOG0617|consen 97 ---------------------------------------GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN 137 (264)
T ss_pred ---------------------------------------ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC
Confidence 36778899999999998875 46777888999999999999
Q ss_pred cCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCccc
Q 006752 485 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 535 (632)
Q Consensus 485 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~ 535 (632)
.+.- +|..++++++|+.|.++.|.+... |..++.+..|+.|.+.+|++.
T Consensus 138 dfe~-lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 138 DFEI-LPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred Cccc-CChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccceee
Confidence 9987 677899999999999999999875 889999999999999999983
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.39 E-value=2e-12 Score=122.54 Aligned_cols=256 Identities=20% Similarity=0.185 Sum_probs=152.2
Q ss_pred HHHHhccCCCccEEEcCCCCCCCchhHHhh----hCCCCcCEEeccCCCCCChh----hHhhhcCCCCccEEEccCCCCC
Q 006752 82 WMAYLGAFRYLRSLNVADCRRVTSSALWAL----TGMTCLKELDLSRCVKVTDA----GMKHLLSISTLEKLWLSETGLT 153 (632)
Q Consensus 82 ~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l----~~l~~L~~L~L~~~~~l~~~----~~~~l~~l~~L~~L~L~~n~i~ 153 (632)
+.+....+..++.++|++|. ++.....++ ...++|++.++++- +++. .+..+.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~---------------- 82 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDM--FTGRLKDEIPEALK---------------- 82 (382)
T ss_pred HHHHhcccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhh--hcCCcHHHHHHHHH----------------
Confidence 34445566777777777776 655444443 34566666666652 2221 111110
Q ss_pred HhHHHHhcCCCCCCEEEcCCCCCChHHHHh----ccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCC
Q 006752 154 ADGIALLSSLQNLSVLDLGGLPVTDLVLRS----LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229 (632)
Q Consensus 154 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~ 229 (632)
....++..+++|++|+|+.|-+....+.. +.++..|++|.|.+|.+.......++. .|.+|. .....+.
T Consensus 83 -~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~----~~kk~~~ 155 (382)
T KOG1909|consen 83 -MLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA----VNKKAAS 155 (382)
T ss_pred -HHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH----HHhccCC
Confidence 11123344556666666666554433332 345677777777777665433333221 011110 0011334
Q ss_pred CCCCCEEECCCCccc-----chhccccCCCCCcEEEeeCCCCCch---hhhhhhhcCCCccEEeccCCCCCch------h
Q 006752 230 ISSLECLNLSNCTID-----SILEGNENKAPLAKISLAGTTFINE---REAFLYIETSLLSFLDVSNSSLSRF------C 295 (632)
Q Consensus 230 l~~L~~L~L~~~~l~-----~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~L~ls~n~l~~~------~ 295 (632)
-+.|+.+...+|++. .+...+..++.|+.+.+..|.+... .....+..|+.|+.||+..|.++.. .
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 455666666666655 2334445667788888887776432 2234566788888888888888654 5
Q ss_pred hhhcCCCCCeeeccCCCCCchHHHHHHh----cCCCCcEEEccCCcCcchhHHHH---HhcCCCCcEEEccCCCC
Q 006752 296 FLTQMKALEHLDLSSSMIGDDSVEMVAC----VGANLRNLNLSNTRFSSAGVGIL---AGHLPNLEILSLSGTQI 363 (632)
Q Consensus 296 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~----~~~~L~~L~l~~n~l~~~~~~~~---~~~~~~L~~L~L~~n~l 363 (632)
.++.+++|+.+++++|.+...+...+.. ..++|+.+.+.+|.++......+ ....|.|..|+|++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6777889999999999888766555443 34789999999998876443222 24478999999999998
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.5e-13 Score=132.10 Aligned_cols=212 Identities=23% Similarity=0.268 Sum_probs=127.2
Q ss_pred CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch----hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCC
Q 006752 252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 327 (632)
Q Consensus 252 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 327 (632)
+..+|+++.+.++.....+..-....|++++.|++++|-+... .....+|+|+.|+++.|++............+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4445555555555544333222233556666666666655444 345567777777777776653332222223377
Q ss_pred CcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhh
Q 006752 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMI 407 (632)
Q Consensus 328 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~ 407 (632)
|+.|.++.|.++-.....+...+|+|+.|++..|.....-.....-+..|+.|||++|++... +..
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~-~~~------------- 264 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF-DQG------------- 264 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc-ccc-------------
Confidence 888888888887766666667788888888888752222222233456777888888777654 210
Q ss_pred hhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcccc------ccCccccccccc
Q 006752 408 VYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP------LSTFKELIHLSL 481 (632)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~------l~~l~~L~~L~L 481 (632)
...+.++.|+.|+++.+.+....... ...+++|++|++
T Consensus 265 ------------------------------------~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i 308 (505)
T KOG3207|consen 265 ------------------------------------YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNI 308 (505)
T ss_pred ------------------------------------cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeec
Confidence 13456677777777777776543222 234677888888
Q ss_pred ccccCCCcc-hhhhccCCCCcEEeecCceeccC
Q 006752 482 RNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNS 513 (632)
Q Consensus 482 s~n~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~ 513 (632)
+.|+|.+.. -..+..+++|+.|.+..|.++..
T Consensus 309 ~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 309 SENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccCccccccccchhhccchhhhhhccccccccc
Confidence 888775522 12345566777777777776654
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=9.5e-13 Score=121.76 Aligned_cols=181 Identities=22% Similarity=0.261 Sum_probs=128.9
Q ss_pred HHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhh-cC
Q 006752 60 LEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHL-LS 138 (632)
Q Consensus 60 ~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l-~~ 138 (632)
+..|.+.+++||||............++.|.+|+.|.+.+.+ +.+.....+++-.+|+.|+|+.|.+++..+...+ .+
T Consensus 180 ~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 180 FSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeeccccccccchhHHHHHHHh
Confidence 344556799999998743334566778999999999999998 8888888999999999999999998888776654 48
Q ss_pred CCCccEEEccCCCCCHhHHHH-hc-CCCCCCEEEcCCCC--CCh-HHHHhccCCCCccEEEecCC-CCCchhhHhhcCCC
Q 006752 139 ISTLEKLWLSETGLTADGIAL-LS-SLQNLSVLDLGGLP--VTD-LVLRSLQVLTKLEYLDLWGS-QVSNRGAAVLKMFP 212 (632)
Q Consensus 139 l~~L~~L~L~~n~i~~~~~~~-~~-~l~~L~~L~L~~n~--i~~-~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~ 212 (632)
|+.|..|+|+.|.+....... .. --++|+.|+++|+. +.. .+..-...+++|.+|||++| .++......|.+++
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 999999999999776544322 22 23578888998865 221 12222367889999999887 45655556677777
Q ss_pred CCcEEEccCCCCC------CCCCCCCCCEEECCCC
Q 006752 213 RLSFLNLAWTGVT------KLPNISSLECLNLSNC 241 (632)
Q Consensus 213 ~L~~L~l~~n~l~------~l~~l~~L~~L~L~~~ 241 (632)
.|++|.++.|..- ++...+.|.+|++.++
T Consensus 339 ~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 339 YLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 7777777665321 2334455555555444
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.29 E-value=3.4e-12 Score=123.65 Aligned_cols=283 Identities=23% Similarity=0.255 Sum_probs=184.3
Q ss_pred hHHhhcCcccEEeccCCCCCCHHHHHHh-ccCCCccEEEcCCCCCCCchhHHhhh-CCCCcCEEeccCCCCCChhhHhhh
Q 006752 59 LLEVFKHNAEAIELRGENSVDAEWMAYL-GAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHL 136 (632)
Q Consensus 59 ~~~~~~~~l~~L~Ls~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~i~~~~~~~l~-~l~~L~~L~L~~~~~l~~~~~~~l 136 (632)
.+...|+++++|++.+|..+++.....+ ..|++|++|++..|..+++.....++ +|++|++|+++.|+.+.+.+.+.+
T Consensus 158 t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 158 TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 3445689999999999988887665555 47899999999999989999998777 899999999999998888777766
Q ss_pred c-CCCCccEEEccCCC-CCHhHHH-HhcCCCCCCEEEcCCCC-CChHHHHhc-cCCCCccEEEecCC-CCCchhhHhh-c
Q 006752 137 L-SISTLEKLWLSETG-LTADGIA-LLSSLQNLSVLDLGGLP-VTDLVLRSL-QVLTKLEYLDLWGS-QVSNRGAAVL-K 209 (632)
Q Consensus 137 ~-~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~-i~~~~~~~l-~~l~~L~~L~L~~n-~l~~~~~~~l-~ 209 (632)
. ++..++.+.+.+|. ....... .=..+.-+..+++..|. +++.....+ ..+..|+.|+.+++ .+++..-.++ .
T Consensus 238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ 317 (483)
T ss_pred hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence 6 78889999888873 2222211 12245566677766654 555543333 46889999999987 4555444444 3
Q ss_pred CCCCCcEEEccCCC-CCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchh-hhhhhhcCCCccEEecc
Q 006752 210 MFPRLSFLNLAWTG-VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER-EAFLYIETSLLSFLDVS 287 (632)
Q Consensus 210 ~l~~L~~L~l~~n~-l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~L~ls 287 (632)
++++|+.+.++.++ ++... +..--.+++.|+.+++.++...... -.....+|+.|+.+.++
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~-----------------ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsls 380 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRG-----------------FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLS 380 (483)
T ss_pred CCCceEEEeccccchhhhhh-----------------hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChh
Confidence 46677777666653 22110 0011114444555555544332221 11123356666666666
Q ss_pred CCCCCchh-------hhhcCCCCCeeeccCCC-CCchHHHHHHhcCCCCcEEEccCCc-CcchhHHHHHhcCCCCcEEEc
Q 006752 288 NSSLSRFC-------FLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSL 358 (632)
Q Consensus 288 ~n~l~~~~-------~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L 358 (632)
+|...... .-.....++.+.++++. +++.....+... ++|+.+++-+|+ ++......+..++|+++...+
T Consensus 381 hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c-~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 381 HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC-RNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC-cccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 66543221 12345677888888876 444455555554 888888888875 555666777788888877655
Q ss_pred c
Q 006752 359 S 359 (632)
Q Consensus 359 ~ 359 (632)
.
T Consensus 460 ~ 460 (483)
T KOG4341|consen 460 F 460 (483)
T ss_pred c
Confidence 4
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.2e-12 Score=124.55 Aligned_cols=211 Identities=20% Similarity=0.241 Sum_probs=156.3
Q ss_pred hcCCCccEEeccCCCCCch---hhhhcCCCCCeeeccCCCCCchHH-HHHHhcCCCCcEEEccCCcCcchhHHHHHhcCC
Q 006752 276 IETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNLSNTRFSSAGVGILAGHLP 351 (632)
Q Consensus 276 ~~~~~L~~L~ls~n~l~~~---~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 351 (632)
.++.+|+.+.+.++.+... .....|++++.||++.|-+....+ ..++...++|+.|+++.|++...........++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 3678899999999988766 367789999999999998876432 344444599999999999876544433335678
Q ss_pred CCcEEEccCCCCChHHHH-HHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchh
Q 006752 352 NLEILSLSGTQIDDYAIS-YMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFI 430 (632)
Q Consensus 352 ~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 430 (632)
+|+.|.++.|.++-.... .+..+|+|+.|++..|........
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~------------------------------------- 240 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT------------------------------------- 240 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc-------------------------------------
Confidence 999999999999865444 345899999999999963222111
Q ss_pred hhcccccccccchHHhhcCCcccccccCccCCCCCc-cccccCcccccccccccccCCCcc-hhh-----hccCCCCcEE
Q 006752 431 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LFPLSTFKELIHLSLRNASLTDVS-LHQ-----LSSLSKLTNL 503 (632)
Q Consensus 431 ~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~-~~~-----~~~l~~L~~L 503 (632)
....+..|+.|||++|++-+.. ....+.++.|+.|+++.|.+..+. |+. -..+++|++|
T Consensus 241 --------------~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L 306 (505)
T KOG3207|consen 241 --------------STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYL 306 (505)
T ss_pred --------------hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceee
Confidence 3445678999999999877632 244677999999999999988753 222 3567999999
Q ss_pred eecCceeccC-CCCCCCCCCCcceEecCCCcccCh
Q 006752 504 SIRDAVLTNS-GLGSFKPPRSLKLLDLHGGWLLTE 537 (632)
Q Consensus 504 ~ls~N~l~~~-~~~~l~~~~~L~~L~l~~N~l~~~ 537 (632)
+++.|+|... ....+..+++|+.|.+..|++...
T Consensus 307 ~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 307 NISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ecccCccccccccchhhccchhhhhhccccccccc
Confidence 9999999653 124444567888888888887443
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=3.7e-12 Score=117.94 Aligned_cols=130 Identities=22% Similarity=0.275 Sum_probs=101.5
Q ss_pred CCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccch
Q 006752 350 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGF 429 (632)
Q Consensus 350 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (632)
.+.|+++|+++|.|+. +-+.+.-.|.++.|++|+|.+...
T Consensus 283 Wq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--------------------------------------- 322 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--------------------------------------- 322 (490)
T ss_pred Hhhhhhccccccchhh-hhhhhhhccceeEEeccccceeee---------------------------------------
Confidence 4568888888888763 445567788888899888888764
Q ss_pred hhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCce
Q 006752 430 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 509 (632)
Q Consensus 430 l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~ 509 (632)
..++.+++|+.||||+|.++. ...+=..+-++++|.|++|.|.+.. .+.++-+|..||+++|+
T Consensus 323 --------------~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~LS--GL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 323 --------------QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETLS--GLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred --------------hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhhh--hhHhhhhheeccccccc
Confidence 346777889999999998876 3333346788899999999888643 67888899999999999
Q ss_pred eccCC-CCCCCCCCCcceEecCCCcccC
Q 006752 510 LTNSG-LGSFKPPRSLKLLDLHGGWLLT 536 (632)
Q Consensus 510 l~~~~-~~~l~~~~~L~~L~l~~N~l~~ 536 (632)
|.... ...+++++.|+++.+.+|++..
T Consensus 386 Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 386 IEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhHHHhcccccccHHHHHhhcCCCccc
Confidence 87753 4667888999999999999733
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=7.6e-11 Score=105.22 Aligned_cols=129 Identities=28% Similarity=0.317 Sum_probs=51.9
Q ss_pred CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEE
Q 006752 252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL 331 (632)
Q Consensus 252 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 331 (632)
++.++++|++.+|.++.+.... ..+.+|+.|++++|.++.+..+..++.|+.|++++|+++.... .+...+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~--~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLG--ATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CH-HHHHH-TT--EE
T ss_pred cccccccccccccccccccchh--hhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcccc-chHHhCCcCCEE
Confidence 4446677777777776654321 2467888888888888888888889999999999999986543 333323899999
Q ss_pred EccCCcCcchhHHHHHhcCCCCcEEEccCCCCChH---HHHHHhcCCCccEEEcc
Q 006752 332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY---AISYMSMMPSLKFIDIS 383 (632)
Q Consensus 332 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~l~~~~~L~~L~Ls 383 (632)
++++|++.+...-...+.+|+|+.|++.+|+++.. -...+..+|+|+.||-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 99999887643222236789999999999987643 34456789999999754
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=1.9e-10 Score=102.67 Aligned_cols=126 Identities=19% Similarity=0.275 Sum_probs=54.2
Q ss_pred hhhhcccccccccchHHhh-cCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecC
Q 006752 429 FIQQVGAETDLVLSLTALQ-NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 507 (632)
Q Consensus 429 ~l~~l~~~~~~l~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~ 507 (632)
.+..|++.++.|+.++.++ .+.+|+.|++++|.|+.. +.+..++.|++|++++|+|+.+.+.....+++|++|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 4678999999999888887 588999999999999984 4678899999999999999996543335799999999999
Q ss_pred ceeccCC-CCCCCCCCCcceEecCCCcccChH-HHHHHHHHcCCeeeeecc
Q 006752 508 AVLTNSG-LGSFKPPRSLKLLDLHGGWLLTED-AILQFCKMHPRIEVWHEL 556 (632)
Q Consensus 508 N~l~~~~-~~~l~~~~~L~~L~l~~N~l~~~~-~~~~~~~~~~~~~~~~~~ 556 (632)
|+|.... ...+..+++|+.|++.+||+.... .-.......|.+++.+..
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9998753 355667899999999999984333 233455566877665544
No 33
>PLN03150 hypothetical protein; Provisional
Probab=99.04 E-value=2.2e-10 Score=125.17 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=81.6
Q ss_pred HhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCC-CC
Q 006752 445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-RS 523 (632)
Q Consensus 445 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~-~~ 523 (632)
.+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..++++++|+.|++++|++++.+|..+... ..
T Consensus 437 ~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~ 516 (623)
T PLN03150 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH 516 (623)
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcccc
Confidence 57788899999999999999899889999999999999999999999999999999999999999999989887653 46
Q ss_pred cceEecCCCcccCh
Q 006752 524 LKLLDLHGGWLLTE 537 (632)
Q Consensus 524 L~~L~l~~N~l~~~ 537 (632)
+..+++.+|+..|+
T Consensus 517 ~~~l~~~~N~~lc~ 530 (623)
T PLN03150 517 RASFNFTDNAGLCG 530 (623)
T ss_pred CceEEecCCccccC
Confidence 77889999987664
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=4.1e-11 Score=111.11 Aligned_cols=129 Identities=21% Similarity=0.304 Sum_probs=65.3
Q ss_pred CCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhh
Q 006752 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCF 405 (632)
Q Consensus 326 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 405 (632)
..|+++|+++|.|+...- .+ .-.|.++.|++++|.+.... .++.+++|+.||||+|.++.. ..+-
T Consensus 284 q~LtelDLS~N~I~~iDE-Sv-KL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~-~Gwh---------- 348 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDE-SV-KLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC-VGWH---------- 348 (490)
T ss_pred hhhhhccccccchhhhhh-hh-hhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh-hhhH----------
Confidence 455566666665543221 11 33556666666666655322 255566666666666655543 1110
Q ss_pred hhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCC-ccccccCcccccccccccc
Q 006752 406 MIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA-TLFPLSTFKELIHLSLRNA 484 (632)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n 484 (632)
.-.|++..|.+..|.+..+..+..+.+|..||+++|+|... ....++++|.|+++.|.+|
T Consensus 349 -------------------~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 349 -------------------LKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred -------------------hhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 00122333333333333334455666666677776666542 1234566666666666666
Q ss_pred cCCC
Q 006752 485 SLTD 488 (632)
Q Consensus 485 ~l~~ 488 (632)
.+.+
T Consensus 410 Pl~~ 413 (490)
T KOG1259|consen 410 PLAG 413 (490)
T ss_pred Cccc
Confidence 6665
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=1.1e-11 Score=124.52 Aligned_cols=209 Identities=22% Similarity=0.283 Sum_probs=149.6
Q ss_pred CCCCcccchhcccc--CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch-hhhhcCCCCCeeeccCCCCC
Q 006752 238 LSNCTIDSILEGNE--NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIG 314 (632)
Q Consensus 238 L~~~~l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n~l~ 314 (632)
|++-++..+|.... .+..-...+++.|++..+|..+. .+..|+.+.+..|.+..+ .++.++..|++++++.|++.
T Consensus 57 Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~--~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS 134 (722)
T KOG0532|consen 57 LSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEAC--AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS 134 (722)
T ss_pred cccchhhcCCCccccccccchhhhhccccccccCchHHH--HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh
Confidence 33334444443333 23333456677777777666433 556777788888888777 67788888999999999887
Q ss_pred chHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCC
Q 006752 315 DDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSG 394 (632)
Q Consensus 315 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 394 (632)
..|..++.+ -|+.|.+++|+++....+. +..+.|..||.+.|++.. .|..++.+.+|+.|.+..|++... |.
T Consensus 135 -~lp~~lC~l--pLkvli~sNNkl~~lp~~i--g~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~l-p~- 206 (722)
T KOG0532|consen 135 -HLPDGLCDL--PLKVLIVSNNKLTSLPEEI--GLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLEDL-PE- 206 (722)
T ss_pred -cCChhhhcC--cceeEEEecCccccCCccc--ccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhhC-CH-
Confidence 355555553 6899999999988654433 567889999999998874 566688889999999999998876 43
Q ss_pred ccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcc
Q 006752 395 QMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 474 (632)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 474 (632)
.+..+ .|..||+|+|+++. +|..|..|+
T Consensus 207 --------------------------------------------------El~~L-pLi~lDfScNkis~-iPv~fr~m~ 234 (722)
T KOG0532|consen 207 --------------------------------------------------ELCSL-PLIRLDFSCNKISY-LPVDFRKMR 234 (722)
T ss_pred --------------------------------------------------HHhCC-ceeeeecccCceee-cchhhhhhh
Confidence 23333 48899999999988 788899999
Q ss_pred cccccccccccCCCcchhhhc---cCCCCcEEeecCce
Q 006752 475 ELIHLSLRNASLTDVSLHQLS---SLSKLTNLSIRDAV 509 (632)
Q Consensus 475 ~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~ls~N~ 509 (632)
.|++|-|.+|.+.. +|..+. ..--.++|+..-++
T Consensus 235 ~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 235 HLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 99999999999987 444433 33445677777664
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=7.9e-10 Score=115.48 Aligned_cols=67 Identities=28% Similarity=0.417 Sum_probs=35.1
Q ss_pred hhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCC
Q 006752 446 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 515 (632)
Q Consensus 446 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 515 (632)
+.++.++..+.+.+|++.. .+..++.+++++.|++++|.++...+ ++.+.+|+.|++++|.++...+
T Consensus 228 ~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 228 LSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhhcccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 3444455555555555544 24444555555555555555555332 5555555555555555555433
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3e-10 Score=105.43 Aligned_cols=190 Identities=24% Similarity=0.271 Sum_probs=96.4
Q ss_pred CccEEEccCCCCCHhHH-HHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCC-CCCchhhH-hhcCCCCCcEE
Q 006752 141 TLEKLWLSETGLTADGI-ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS-QVSNRGAA-VLKMFPRLSFL 217 (632)
Q Consensus 141 ~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~-~l~~l~~L~~L 217 (632)
.|+++||+...++.... ..+..|.+|+.|.+.++++.+.+...++.-.+|+.|+++.+ .++..... .+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46667777666654332 34556667777777777777666666666677777777665 34433222 34556666666
Q ss_pred EccCCCCCC------CC-CCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCC
Q 006752 218 NLAWTGVTK------LP-NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 290 (632)
Q Consensus 218 ~l~~n~l~~------l~-~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~ 290 (632)
+++|+.+.. +. --++|+.|+++++.-. +...........|++|.+||++.|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn---------------------l~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN---------------------LQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhh---------------------hhhhHHHHHHHhCCceeeecccccc
Confidence 666665442 00 1244555555554321 0000111122345555555555543
Q ss_pred CCch---hhhhcCCCCCeeeccCCCCCchHHHHHHhcC--CCCcEEEccCCcCcchhHHHHHhcCCCCc
Q 006752 291 LSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVG--ANLRNLNLSNTRFSSAGVGILAGHLPNLE 354 (632)
Q Consensus 291 l~~~---~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 354 (632)
.-.. ..+..++.|++|.++.|.. .+|..+..+. |+|.+|++.+|- .+...+.+...+++|+
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v-sdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV-SDTTMELLKEMLSHLK 390 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc-CchHHHHHHHhCcccc
Confidence 2211 4455566666666666642 2333322211 666777766652 2222333334455544
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=8.7e-10 Score=115.15 Aligned_cols=192 Identities=30% Similarity=0.433 Sum_probs=135.9
Q ss_pred EEeccCCCC-CchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCC-CCcEEEccCCcCcchhHHHHHhcCCCCcEEEccC
Q 006752 283 FLDVSNSSL-SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA-NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360 (632)
Q Consensus 283 ~L~ls~n~l-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~ 360 (632)
.+++..+.+ .....+...+.++.|++.+|.+++..+. .... . +|+.|++++|++.... ..+ +.+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~-~~nL~~L~l~~N~i~~l~-~~~-~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLL-KSNLKELDLSDNKIESLP-SPL-RNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccc-hhhcccccccccchhhhh-hhh-hccccccccccCC
Confidence 344444444 2223344445666666666666643332 2221 2 6777777777776542 111 5688888888888
Q ss_pred CCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccc
Q 006752 361 TQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLV 440 (632)
Q Consensus 361 n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l 440 (632)
|+++... ...+..+.|+.|++++|++... |.
T Consensus 173 N~l~~l~-~~~~~~~~L~~L~ls~N~i~~l-~~----------------------------------------------- 203 (394)
T COG4886 173 NDLSDLP-KLLSNLSNLNNLDLSGNKISDL-PP----------------------------------------------- 203 (394)
T ss_pred chhhhhh-hhhhhhhhhhheeccCCccccC-ch-----------------------------------------------
Confidence 8887543 3344778888888888888875 33
Q ss_pred cchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCC
Q 006752 441 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP 520 (632)
Q Consensus 441 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~ 520 (632)
.......|++|.+++|.+.. .+..+..+..+..+.+.+|++... +..++.++++++|++++|+++.... +..
T Consensus 204 ----~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~ 275 (394)
T COG4886 204 ----EIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGS 275 (394)
T ss_pred ----hhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeec-cchhccccccceecccccccccccc--ccc
Confidence 12344569999999996444 467788899999999999999873 6788899999999999999999654 888
Q ss_pred CCCcceEecCCCccc
Q 006752 521 PRSLKLLDLHGGWLL 535 (632)
Q Consensus 521 ~~~L~~L~l~~N~l~ 535 (632)
..+++.|++++|.+.
T Consensus 276 ~~~l~~L~~s~n~~~ 290 (394)
T COG4886 276 LTNLRELDLSGNSLS 290 (394)
T ss_pred cCccCEEeccCcccc
Confidence 899999999999873
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.93 E-value=1.2e-09 Score=119.51 Aligned_cols=111 Identities=20% Similarity=0.256 Sum_probs=99.9
Q ss_pred CCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhh
Q 006752 352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQ 431 (632)
Q Consensus 352 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (632)
.++.|+|++|.+.+..|..++.+++|+.|+|++|.+.|.+|.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~-------------------------------------- 460 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-------------------------------------- 460 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh--------------------------------------
Confidence 378899999999999999999999999999999999998887
Q ss_pred hcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccC-CCCcEEeecCcee
Q 006752 432 QVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL-SKLTNLSIRDAVL 510 (632)
Q Consensus 432 ~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~ls~N~l 510 (632)
.+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|..+... .++..+++.+|..
T Consensus 461 -------------~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 461 -------------SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred -------------HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 56788999999999999999999999999999999999999999999988764 5778999999876
Q ss_pred ccC
Q 006752 511 TNS 513 (632)
Q Consensus 511 ~~~ 513 (632)
..-
T Consensus 528 lc~ 530 (623)
T PLN03150 528 LCG 530 (623)
T ss_pred ccC
Confidence 543
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=6.3e-10 Score=81.58 Aligned_cols=59 Identities=29% Similarity=0.394 Sum_probs=30.7
Q ss_pred cccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCc
Q 006752 475 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 533 (632)
Q Consensus 475 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~ 533 (632)
+|++|++++|+++.+.+.+|.++++|++|++++|+++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555555444455555555555555555555544555555555555555554
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=8.7e-10 Score=80.84 Aligned_cols=61 Identities=26% Similarity=0.396 Sum_probs=57.9
Q ss_pred CcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCcee
Q 006752 450 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 510 (632)
Q Consensus 450 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l 510 (632)
++|++|++++|+++...+..|..+++|++|++++|+++.+.+.+|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999999998888999999999999999999999999999999999999999975
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=6e-11 Score=119.36 Aligned_cols=174 Identities=22% Similarity=0.278 Sum_probs=108.2
Q ss_pred CCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEE
Q 006752 301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380 (632)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 380 (632)
.--...|++.|++.. .|.....+ ..|+.+.+..|.+..... .+ ..+..|++|+++.|++.. .|..++.++ |+.|
T Consensus 75 tdt~~aDlsrNR~~e-lp~~~~~f-~~Le~liLy~n~~r~ip~-~i-~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSE-LPEEACAF-VSLESLILYHNCIRTIPE-AI-CNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVL 148 (722)
T ss_pred cchhhhhcccccccc-CchHHHHH-HHHHHHHHHhccceecch-hh-hhhhHHHHhhhccchhhc-CChhhhcCc-ceeE
Confidence 334567777787763 44444444 677778888777764433 33 457788888888888864 445566664 8888
Q ss_pred EccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCcc
Q 006752 381 DISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT 460 (632)
Q Consensus 381 ~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n 460 (632)
-+++|+++.. |..+ +...+|..||.+.|
T Consensus 149 i~sNNkl~~l-p~~i---------------------------------------------------g~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 149 IVSNNKLTSL-PEEI---------------------------------------------------GLLPTLAHLDVSKN 176 (722)
T ss_pred EEecCccccC-Cccc---------------------------------------------------ccchhHHHhhhhhh
Confidence 8888888764 5532 23455666666666
Q ss_pred CCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccC
Q 006752 461 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 536 (632)
Q Consensus 461 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~ 536 (632)
.+.. +|..++.+.+|+.|.+..|++... |..+.. -.|..||+|.|+++.+ |-.|..+..|++|-|.+|++..
T Consensus 177 ei~s-lpsql~~l~slr~l~vrRn~l~~l-p~El~~-LpLi~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 177 EIQS-LPSQLGYLTSLRDLNVRRNHLEDL-PEELCS-LPLIRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhh-chHHhhhHHHHHHHHHhhhhhhhC-CHHHhC-CceeeeecccCceeec-chhhhhhhhheeeeeccCCCCC
Confidence 6655 455556666666666666666653 333442 3366666666666653 5566666666666666666533
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=2.9e-10 Score=118.89 Aligned_cols=196 Identities=24% Similarity=0.305 Sum_probs=98.1
Q ss_pred cCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEE
Q 006752 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356 (632)
Q Consensus 277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 356 (632)
.+++|++|++++|.++.+..+..++.|+.|++++|.+.+.. .+..+ +.|+.+++++|++....... ...+.+++.+
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~--~~~~l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l 191 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS--GLESL-KSLKLLDLSYNRIVDIENDE-LSELISLEEL 191 (414)
T ss_pred hhhcchheeccccccccccchhhccchhhheeccCcchhcc--CCccc-hhhhcccCCcchhhhhhhhh-hhhccchHHH
Confidence 34455555555555555544555555555555555544211 11112 45555555555555433311 1345566666
Q ss_pred EccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccc
Q 006752 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAE 436 (632)
Q Consensus 357 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 436 (632)
++.+|.+... ..+..+..+..+++..|.++..-+.
T Consensus 192 ~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l------------------------------------------- 226 (414)
T KOG0531|consen 192 DLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGL------------------------------------------- 226 (414)
T ss_pred hccCCchhcc--cchHHHHHHHHhhcccccceeccCc-------------------------------------------
Confidence 6666655432 1222333344445566655543222
Q ss_pred cccccchHHhhcCC--cccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCC
Q 006752 437 TDLVLSLTALQNLN--HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG 514 (632)
Q Consensus 437 ~~~l~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~ 514 (632)
..+. +|+.+++++|.+... +..+..+..+..|++.+|++...- .+...+.+..+....|++....
T Consensus 227 ----------~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 293 (414)
T KOG0531|consen 227 ----------NELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSE 293 (414)
T ss_pred ----------ccchhHHHHHHhcccCccccc-cccccccccccccchhhccccccc--cccccchHHHhccCcchhcchh
Confidence 1111 366677777666652 244555666777777777666532 3445556666666666655321
Q ss_pred ---CCC-CCCCCCcceEecCCCcc
Q 006752 515 ---LGS-FKPPRSLKLLDLHGGWL 534 (632)
Q Consensus 515 ---~~~-l~~~~~L~~L~l~~N~l 534 (632)
... ....+.++.+++..|+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 294 AISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred hhhccccccccccccccccccCcc
Confidence 111 23446667777777765
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=5.6e-10 Score=116.72 Aligned_cols=243 Identities=23% Similarity=0.225 Sum_probs=163.4
Q ss_pred CCCcEEEccCCCCCC----CCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEecc
Q 006752 212 PRLSFLNLAWTGVTK----LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS 287 (632)
Q Consensus 212 ~~L~~L~l~~n~l~~----l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls 287 (632)
..++.+.+..|.+.. +..+.+++.|++.+|.+..+...+..+++|++|++++|.++.+... ..+..|+.|+++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l---~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL---STLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccch---hhccchhhheec
Confidence 334444444444433 4556677777777777776655566777888888888887766543 245668889999
Q ss_pred CCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHH
Q 006752 288 NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 367 (632)
Q Consensus 288 ~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 367 (632)
+|.++.+..+..++.|+.+++++|.+..........+ .+++.+.+.+|.+....... .+..+..+++..|.++...
T Consensus 149 ~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~-~~l~~l~l~~n~i~~i~~~~---~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 149 GNLISDISGLESLKSLKLLDLSYNRIVDIENDELSEL-ISLEELDLGGNSIREIEGLD---LLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred cCcchhccCCccchhhhcccCCcchhhhhhhhhhhhc-cchHHHhccCCchhcccchH---HHHHHHHhhcccccceecc
Confidence 9999888888888999999999999886554112333 78999999999876543332 2334445577788776422
Q ss_pred HHHHhcCC--CccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHH
Q 006752 368 ISYMSMMP--SLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTA 445 (632)
Q Consensus 368 ~~~l~~~~--~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 445 (632)
+ +.... .|+.+++++|++.... . .
T Consensus 225 ~--l~~~~~~~L~~l~l~~n~i~~~~-~---------------------------------------------------~ 250 (414)
T KOG0531|consen 225 G--LNELVMLHLRELYLSGNRISRSP-E---------------------------------------------------G 250 (414)
T ss_pred C--cccchhHHHHHHhcccCcccccc-c---------------------------------------------------c
Confidence 1 22222 3889999999887641 1 2
Q ss_pred hhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcc---hhh-hccCCCCcEEeecCceeccCCCCC
Q 006752 446 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS---LHQ-LSSLSKLTNLSIRDAVLTNSGLGS 517 (632)
Q Consensus 446 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~-~~~l~~L~~L~ls~N~l~~~~~~~ 517 (632)
+..+..+..|++.+|++... ..+...+.+..+....|++.... ... ....+.++...+..|.+....+..
T Consensus 251 ~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (414)
T KOG0531|consen 251 LENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSLD 324 (414)
T ss_pred ccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccccc
Confidence 44567888899998888763 33456777888888888776421 111 456778888888888887765433
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.82 E-value=2.4e-09 Score=119.53 Aligned_cols=294 Identities=20% Similarity=0.205 Sum_probs=163.4
Q ss_pred cCCCccEEEcCCCCC-CCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCC
Q 006752 88 AFRYLRSLNVADCRR-VTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNL 166 (632)
Q Consensus 88 ~~~~L~~L~L~~~~~-i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 166 (632)
.++.|++|-+..+.. +.......|..++.|++|||++|.. ....|..++++-+||+|+++++.+. ..|..+.+++.|
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 456788887777652 4444555577788888888888743 3345677778888888888888877 367778888888
Q ss_pred CEEEcCCCCCChHHHHhccCCCCccEEEecCCC--CCchhhHhhcCCCCCcEEEccCCCC---CCCCCCCCCC----EEE
Q 006752 167 SVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ--VSNRGAAVLKMFPRLSFLNLAWTGV---TKLPNISSLE----CLN 237 (632)
Q Consensus 167 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~l~~n~l---~~l~~l~~L~----~L~ 237 (632)
.+|++..+.....++.....+++|++|.+.... .+......+..+.+|+.+....... ..+..+..|. .+.
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhh
Confidence 888888776544445555668888888876653 2223334445555555555543332 1122222222 333
Q ss_pred CCCCcccchhccccCCCCCcEEEeeCCCCCchhhhh----hhh-cCCCccEEeccCCCCCch-hhhhcCCCCCeeeccCC
Q 006752 238 LSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF----LYI-ETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSS 311 (632)
Q Consensus 238 L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----~~~-~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n 311 (632)
+.++.....+..+..+.+|+.|.+.++....+.... ... .++++..+.+.++..... .+....++|+.|.+..+
T Consensus 701 ~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 701 IEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSC 780 (889)
T ss_pred hcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecc
Confidence 333444455566667888888888888775432210 000 022333333333332222 34445678888888877
Q ss_pred CCCchHHHHHHhcCCCCcEEEccCCcCcchh-HHHHHhcCCCCcEEEccCCCCChHHHHH---HhcCCCccEEEccCC
Q 006752 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAG-VGILAGHLPNLEILSLSGTQIDDYAISY---MSMMPSLKFIDISNT 385 (632)
Q Consensus 312 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~---l~~~~~L~~L~Ls~n 385 (632)
...+.++...... ..++.+.+..+.+.+.. .... +.++++..+.+++=.+....... +..+|.+..+.+.+|
T Consensus 781 ~~~e~~i~~~k~~-~~l~~~i~~f~~~~~l~~~~~l-~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 781 RLLEDIIPKLKAL-LELKELILPFNKLEGLRMLCSL-GGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGC 856 (889)
T ss_pred cccccCCCHHHHh-hhcccEEecccccccceeeecC-CCCceeEecccCccchhheehhcCcccccCccccccceecc
Confidence 6554444444444 45555555555554431 2111 34555555555443322211111 223455555555553
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.75 E-value=2e-08 Score=92.31 Aligned_cols=248 Identities=19% Similarity=0.190 Sum_probs=144.0
Q ss_pred hhcCCCCccEEEccCCCCCHhHHHHh----cCCCCCCEEEcCCCC---CChHHH-------HhccCCCCccEEEecCCCC
Q 006752 135 HLLSISTLEKLWLSETGLTADGIALL----SSLQNLSVLDLGGLP---VTDLVL-------RSLQVLTKLEYLDLWGSQV 200 (632)
Q Consensus 135 ~l~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~L~~n~---i~~~~~-------~~l~~l~~L~~L~L~~n~l 200 (632)
.+..+..+..++|++|.|......++ .+-.+|+..+++.-. ..+.++ .++-.||+|+..+|+.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34457778888888888876554443 345677777766522 222222 2345677777777777766
Q ss_pred CchhhH----hhcCCCCCcEEEccCCCCCCCCCC---CCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhh
Q 006752 201 SNRGAA----VLKMFPRLSFLNLAWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 273 (632)
Q Consensus 201 ~~~~~~----~l~~l~~L~~L~l~~n~l~~l~~l---~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 273 (632)
....|. .+++-+.|++|.+++|.+..++.- +.|.+| ..-.....-|.|+++....|++...+...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--------a~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--------AYNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--------HHHhhhccCCCceEEEeccchhccCcHHH
Confidence 554443 334455566666666655433210 000000 00112235566777777777765533221
Q ss_pred ---hhhcCCCccEEeccCCCCCch-------hhhhcCCCCCeeeccCCCCCchHHHHHHhcC---CCCcEEEccCCcCcc
Q 006752 274 ---LYIETSLLSFLDVSNSSLSRF-------CFLTQMKALEHLDLSSSMIGDDSVEMVACVG---ANLRNLNLSNTRFSS 340 (632)
Q Consensus 274 ---~~~~~~~L~~L~ls~n~l~~~-------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~L~~L~l~~n~l~~ 340 (632)
.+..-..|+.+.+..|.+... ..+..+++|+.||+.+|.++-.+...++... +.|++|.+.+|-++.
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 222235677777777777543 3455678888888888887755444333321 567888888888777
Q ss_pred hhHHHHHhc-----CCCCcEEEccCCCCChHHHH-----HH--hcCCCccEEEccCCccccc
Q 006752 341 AGVGILAGH-----LPNLEILSLSGTQIDDYAIS-----YM--SMMPSLKFIDISNTDIKGM 390 (632)
Q Consensus 341 ~~~~~~~~~-----~~~L~~L~L~~n~l~~~~~~-----~l--~~~~~L~~L~Ls~n~i~~~ 390 (632)
.+...++.. .|+|..|...+|.+.+.+.. .+ ..+|-|..|.+.+|++...
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 665554432 46888888888865543211 12 2577788888888887653
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.71 E-value=6.5e-08 Score=89.03 Aligned_cols=247 Identities=17% Similarity=0.133 Sum_probs=154.2
Q ss_pred HHhhhCCCCcCEEeccCCCCCChhhHhhhc----CCCCccEEEccCC---CCCHhHH-------HHhcCCCCCCEEEcCC
Q 006752 108 LWALTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSET---GLTADGI-------ALLSSLQNLSVLDLGG 173 (632)
Q Consensus 108 ~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~----~l~~L~~L~L~~n---~i~~~~~-------~~~~~l~~L~~L~L~~ 173 (632)
...+..+..++.++||+| .+......+++ +-.+|+..+++.- +.....+ .++.+||+|+..+|+.
T Consensus 23 ~eel~~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 23 VEELEMMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHHHhhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 345566889999999999 67777777665 4578888888764 2222232 4566899999999999
Q ss_pred CCCChHHHH----hccCCCCccEEEecCCCCCchhh----HhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccc
Q 006752 174 LPVTDLVLR----SLQVLTKLEYLDLWGSQVSNRGA----AVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245 (632)
Q Consensus 174 n~i~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~ 245 (632)
|.+....|. .+++-+.|++|.+++|.+..... .++..+... .....-|.|+......|++..
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n----------KKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN----------KKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH----------hhhccCCCceEEEeccchhcc
Confidence 998765544 44678999999999998753322 222111000 011223444455555554442
Q ss_pred hh-----ccccCCCCCcEEEeeCCCCCchh----hhhhhhcCCCccEEeccCCCCCch------hhhhcCCCCCeeeccC
Q 006752 246 IL-----EGNENKAPLAKISLAGTTFINER----EAFLYIETSLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSS 310 (632)
Q Consensus 246 ~~-----~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~ls~n~l~~~------~~l~~~~~L~~L~l~~ 310 (632)
.+ ..+....+|+++.+..|.+.... .......+.+|+.||+..|.++.. .++...+.|+.|.+.+
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence 22 12223346666666666554321 112234567777777777777644 3455566788888888
Q ss_pred CCCCchHHHHHHhc-----CCCCcEEEccCCcCcch------hHHHHHhcCCCCcEEEccCCCCCh
Q 006752 311 SMIGDDSVEMVACV-----GANLRNLNLSNTRFSSA------GVGILAGHLPNLEILSLSGTQIDD 365 (632)
Q Consensus 311 n~l~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~------~~~~~~~~~~~L~~L~L~~n~l~~ 365 (632)
|-++..+...+... .++|..|...+|.+.+. .+...-+.+|-|..|.+.+|++..
T Consensus 252 Clls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 252 CLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 88776665554432 27888888888865442 222223567888888888898764
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.65 E-value=9e-09 Score=115.03 Aligned_cols=109 Identities=23% Similarity=0.200 Sum_probs=59.8
Q ss_pred CCCCcCEEeccCCCC-CChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCcc
Q 006752 113 GMTCLKELDLSRCVK-VTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLE 191 (632)
Q Consensus 113 ~l~~L~~L~L~~~~~-l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~ 191 (632)
.++.|++|-+.+|.. +.......|..++.|++|||++|.--+..|..++.+-+|++|+++++.+.. +|..++++..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhh
Confidence 344566666665531 333333445556666666666654444555666666666666666666553 555666666666
Q ss_pred EEEecCCCCCchhhHhhcCCCCCcEEEccCC
Q 006752 192 YLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT 222 (632)
Q Consensus 192 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 222 (632)
+|++..+.-....+.....+++|++|.+...
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeecc
Confidence 6666655433333444455566666655443
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.53 E-value=3.9e-09 Score=109.38 Aligned_cols=177 Identities=25% Similarity=0.294 Sum_probs=95.0
Q ss_pred hhcCCCccEEeccCCCCCchhhhhcC-CCCCeeeccCCCCCchHHHHHHh----cC-----CCCcEEEccCCcCcchhHH
Q 006752 275 YIETSLLSFLDVSNSSLSRFCFLTQM-KALEHLDLSSSMIGDDSVEMVAC----VG-----ANLRNLNLSNTRFSSAGVG 344 (632)
Q Consensus 275 ~~~~~~L~~L~ls~n~l~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~----~~-----~~L~~L~l~~n~l~~~~~~ 344 (632)
...+.+|+.|.+.+|.+.....+..+ ..|++|-..+ .++ ..-..+.. .+ ..|...+.++|++.....
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~-Sl~-Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~- 181 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHN-SLD-ALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE- 181 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhc-cHH-HHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH-
Confidence 33567788888888877655222221 2344443322 111 01111111 00 245666666666553221
Q ss_pred HHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccc
Q 006752 345 ILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSS 424 (632)
Q Consensus 345 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (632)
.+ .-++.|+.|+|++|+++... .+..|+.|++|||++|.+... |..
T Consensus 182 SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~v-p~l------------------------------ 227 (1096)
T KOG1859|consen 182 SL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHV-PQL------------------------------ 227 (1096)
T ss_pred HH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccc-ccc------------------------------
Confidence 11 34566777777777776533 566777777777777776653 331
Q ss_pred cccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcch-hhhccCCCCcEE
Q 006752 425 VLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNL 503 (632)
Q Consensus 425 ~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L 503 (632)
.-.+|. |+.|.|++|.++. ...+.++.+|+.||+++|-|.+... ..+..+..|+.|
T Consensus 228 --------------------~~~gc~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L 284 (1096)
T KOG1859|consen 228 --------------------SMVGCK-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL 284 (1096)
T ss_pred --------------------chhhhh-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence 122333 7777777776665 2445667777777777776655321 123445566666
Q ss_pred eecCceec
Q 006752 504 SIRDAVLT 511 (632)
Q Consensus 504 ~ls~N~l~ 511 (632)
+|.+|.+-
T Consensus 285 ~LeGNPl~ 292 (1096)
T KOG1859|consen 285 WLEGNPLC 292 (1096)
T ss_pred hhcCCccc
Confidence 66666554
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=7.7e-08 Score=89.72 Aligned_cols=176 Identities=18% Similarity=0.181 Sum_probs=91.5
Q ss_pred CCCCccEEEccCCCCCH--hHHHHhcCCCCCCEEEcCCCCCChHHHHhc-cCCCCccEEEecCCCCCch-hhHhhcCCCC
Q 006752 138 SISTLEKLWLSETGLTA--DGIALLSSLQNLSVLDLGGLPVTDLVLRSL-QVLTKLEYLDLWGSQVSNR-GAAVLKMFPR 213 (632)
Q Consensus 138 ~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l-~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~ 213 (632)
.++.++.+||.+|.|+. .+...+.++|.|+.|+++.|.+...+ ..+ ....+|+.|-|.+..+.-. ....+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45666666666666654 22234456667777777766665432 122 2345666666666655422 2234456666
Q ss_pred CcEEEccCCCCCCC-------C-CCCCCCEEECCCCcccc---hhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCcc
Q 006752 214 LSFLNLAWTGVTKL-------P-NISSLECLNLSNCTIDS---ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS 282 (632)
Q Consensus 214 L~~L~l~~n~l~~l-------~-~l~~L~~L~L~~~~l~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 282 (632)
+++|.++.|.+..+ . -.+.+++|+...|.... +-..-..++++..+.+..|.+.+....-.+...+.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 67776666643321 1 11345555555554431 1111124556666666666665544433444455555
Q ss_pred EEeccCCCCCch---hhhhcCCCCCeeeccCCCCC
Q 006752 283 FLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIG 314 (632)
Q Consensus 283 ~L~ls~n~l~~~---~~l~~~~~L~~L~l~~n~l~ 314 (632)
.|+++.+++.+. ..+..+++|..|.++++.+.
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 555555555444 44455555555555555544
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.44 E-value=8.7e-09 Score=106.85 Aligned_cols=124 Identities=24% Similarity=0.311 Sum_probs=73.0
Q ss_pred CCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCC----CCCCEEECCC
Q 006752 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNI----SSLECLNLSN 240 (632)
Q Consensus 165 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l----~~L~~L~L~~ 240 (632)
.|.+.+.++|.+.- ...++.-++.|+.|+|++|+++... .+..+++|++|||++|.+..++.+ ..|..|.+++
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 45555566665543 2344555666777777777766443 566677777777777766665532 2366666666
Q ss_pred CcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCC
Q 006752 241 CTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292 (632)
Q Consensus 241 ~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 292 (632)
|.++.+ .++.++.+|+.|+++.|-+.+.........+..|+.|.|.+|.+-
T Consensus 242 N~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 666544 334556666666666666555443333445556666666666553
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.44 E-value=5.6e-07 Score=98.27 Aligned_cols=231 Identities=19% Similarity=0.247 Sum_probs=145.5
Q ss_pred hhHHHHHHHHHHHhchhHHHHHHHhhhcccCCcHHHHHHHHHHHHhcccc-chhhHHh--hcCcccEEeccCCCCCCHHH
Q 006752 6 ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLI-FPSLLEV--FKHNAEAIELRGENSVDAEW 82 (632)
Q Consensus 6 ~~~l~~lc~~~~~~~~~~~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~-~p~~~~~--~~~~l~~L~Ls~~~~~~~~~ 82 (632)
++++.++...+++..... -.+.. .-..+++...+.+...+...... .+..... ..-+++..++.+. ......
T Consensus 2 ~~sl~~~a~~~ia~~i~n---g~y~~-~~~~ld~~sSn~i~~~ll~~~~~~~~~~~~~~~~~f~ltki~l~~~-~~~~~~ 76 (699)
T KOG3665|consen 2 VSSLADIACQKIAEYIQN---GSYNN-LQYELDPKSSNKIYSELLLKKFELTPEFLERIIRKFNLTKIDLKNV-TLQHQT 76 (699)
T ss_pred CCchhhhhHHHHHHHHhc---CCccc-cceecChhhhHHHHHHHHhccCCCchhHHHhhhhhheeEEeeccce-ecchhH
Confidence 356677777766655321 11111 33356666666666666543222 1111111 1236888888877 344555
Q ss_pred HHHhccCCCccEEEcCCCCCCCchhHH-----------hh-h--CCCCcCEEeccCCCCCChhhHhhhc-CCCCccEEEc
Q 006752 83 MAYLGAFRYLRSLNVADCRRVTSSALW-----------AL-T--GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWL 147 (632)
Q Consensus 83 ~~~~~~~~~L~~L~L~~~~~i~~~~~~-----------~l-~--~l~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~L 147 (632)
...+.... |++|.+.+...+...... .+ . .-.+|++||+++...+....+..++ -+|+|+.|.+
T Consensus 77 ~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i 155 (699)
T KOG3665|consen 77 LEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVI 155 (699)
T ss_pred HHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEe
Confidence 55555555 888888875422211111 11 1 2357999999998777777777777 5899999999
Q ss_pred cCCCCCH-hHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCc-hhhHhhcCCCCCcEEEccCCCCC
Q 006752 148 SETGLTA-DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVT 225 (632)
Q Consensus 148 ~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~ 225 (632)
.+-.+.. .......++|+|..||++++.++.. ..++.+++|+.|.+.+=.+.. ..-..+..+++|+.||+|.....
T Consensus 156 ~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 156 SGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred cCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 9876643 3345566889999999999988875 677888999998887766553 33345677888888888876544
Q ss_pred CCC-----------CCCCCCEEECCCCccc
Q 006752 226 KLP-----------NISSLECLNLSNCTID 244 (632)
Q Consensus 226 ~l~-----------~l~~L~~L~L~~~~l~ 244 (632)
.-+ .+|+|+.||.+++.+.
T Consensus 234 ~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 234 DDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cchHHHHHHHHhcccCccccEEecCCcchh
Confidence 311 3667777777776665
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=3e-07 Score=85.88 Aligned_cols=206 Identities=17% Similarity=0.265 Sum_probs=111.2
Q ss_pred CCCEEEcCCCCCChHHH-Hhc-cCCCCccEEEecCCCCCc--hhhHhhcCCCCCcEEEccCCCCCC----CC-CCCCCCE
Q 006752 165 NLSVLDLGGLPVTDLVL-RSL-QVLTKLEYLDLWGSQVSN--RGAAVLKMFPRLSFLNLAWTGVTK----LP-NISSLEC 235 (632)
Q Consensus 165 ~L~~L~L~~n~i~~~~~-~~l-~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~----l~-~l~~L~~ 235 (632)
-++.+.+.++.|..... ..| ..++.++.+||.+|.|++ .+...+.++|.|+.|+++.|.+.. +| ...+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 34455555665543321 222 346778888888888764 344456777888888887776653 33 4456666
Q ss_pred EECCCCccc--chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCC
Q 006752 236 LNLSNCTID--SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMI 313 (632)
Q Consensus 236 L~L~~~~l~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l 313 (632)
|-|.+..+. .....+..+|.+++|.++.|.+.. +.+..+.... .-+.+++|....|..
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq---------------~n~Dd~c~e~-----~s~~v~tlh~~~c~~ 185 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ---------------LNLDDNCIED-----WSTEVLTLHQLPCLE 185 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh---------------hccccccccc-----cchhhhhhhcCCcHH
Confidence 666665554 222233344444555554442211 1111111111 112334444443321
Q ss_pred Cc-hHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChH-HHHHHhcCCCccEEEccCCccccc
Q 006752 314 GD-DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY-AISYMSMMPSLKFIDISNTDIKGM 390 (632)
Q Consensus 314 ~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~Ls~n~i~~~ 390 (632)
.- .....+...++++..+.+..|.+.+.....-....|.+.-|+|+.++|.+- ...++..+++|..|.++++++...
T Consensus 186 ~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 186 QLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred HHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 10 001122233377777777777776655544345567777778888777642 345567788888888888877654
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.34 E-value=7.9e-07 Score=97.13 Aligned_cols=137 Identities=20% Similarity=0.313 Sum_probs=74.8
Q ss_pred CcccEEeccCCCCCCHHHHHHhc-cCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCcc
Q 006752 65 HNAEAIELRGENSVDAEWMAYLG-AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (632)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 143 (632)
.+|++||++|...+...|+..++ .+|.|++|.+++-....+.......++|+|..||+|++ .++.. ..++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHHhccccHH
Confidence 45667777776555555655554 45777777776655223322333336677777777766 44443 4455666666
Q ss_pred EEEccCCCCCH-hHHHHhcCCCCCCEEEcCCCCCChH--HH----HhccCCCCccEEEecCCCCCchh
Q 006752 144 KLWLSETGLTA-DGIALLSSLQNLSVLDLGGLPVTDL--VL----RSLQVLTKLEYLDLWGSQVSNRG 204 (632)
Q Consensus 144 ~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~--~~----~~l~~l~~L~~L~L~~n~l~~~~ 204 (632)
.|.+.+-.+.. .....+..+++|++||++....... +. +.-..+|+|+.||.+++.+....
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 66666655543 2223455666777777665442221 11 11134566666666666555443
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=2.8e-07 Score=76.10 Aligned_cols=129 Identities=23% Similarity=0.224 Sum_probs=85.5
Q ss_pred CCcEEEccCCCCCh--HHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccch
Q 006752 352 NLEILSLSGTQIDD--YAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGF 429 (632)
Q Consensus 352 ~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (632)
.+..++|+.|++.. ..+..+.....|+..+|++|.+... |..
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f-p~k----------------------------------- 71 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF-PKK----------------------------------- 71 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC-CHH-----------------------------------
Confidence 56677778887642 2334455666777788888887765 331
Q ss_pred hhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCce
Q 006752 430 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 509 (632)
Q Consensus 430 l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~ 509 (632)
.-...+.++.|++++|.|++ +|..+..++.|+.|+++.|.+.. .|+.+..+.+|-.|+..+|.
T Consensus 72 ---------------ft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 72 ---------------FTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ---------------Hhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCc
Confidence 12334577888888888887 56668888888888888888876 56666667788888888887
Q ss_pred eccCCCCCCCCCCCcceEecCCCcc
Q 006752 510 LTNSGLGSFKPPRSLKLLDLHGGWL 534 (632)
Q Consensus 510 l~~~~~~~l~~~~~L~~L~l~~N~l 534 (632)
+..+..+ +-.....-..+++++++
T Consensus 135 ~~eid~d-l~~s~~~al~~lgnepl 158 (177)
T KOG4579|consen 135 RAEIDVD-LFYSSLPALIKLGNEPL 158 (177)
T ss_pred cccCcHH-HhccccHHHHHhcCCcc
Confidence 7765434 22223334455566665
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.09 E-value=4.9e-06 Score=89.58 Aligned_cols=244 Identities=28% Similarity=0.288 Sum_probs=137.9
Q ss_pred HHHhccCCCccEEEcCCCCCCCchhHHhhh-CCCCcCEEeccCC-CCCChhh---HhhhcCCCCccEEEccCCC-CCHhH
Q 006752 83 MAYLGAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRC-VKVTDAG---MKHLLSISTLEKLWLSETG-LTADG 156 (632)
Q Consensus 83 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~-~l~~L~~L~L~~~-~~l~~~~---~~~l~~l~~L~~L~L~~n~-i~~~~ 156 (632)
......+++|+.|.+..|..+++.....+. .++.|++|+++++ ....... ......+++|+.|+++++. +++..
T Consensus 181 ~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 181 LRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred HHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 344445788888888888767765544444 7888888888872 2222221 1223356888888888886 66665
Q ss_pred HHHhc-CCCCCCEEEcCCCC-CChHHHHhc-cCCCCccEEEecCCCCC-ch-hhHhhcCCCCCcEEEccCCCCCCCCCCC
Q 006752 157 IALLS-SLQNLSVLDLGGLP-VTDLVLRSL-QVLTKLEYLDLWGSQVS-NR-GAAVLKMFPRLSFLNLAWTGVTKLPNIS 231 (632)
Q Consensus 157 ~~~~~-~l~~L~~L~L~~n~-i~~~~~~~l-~~l~~L~~L~L~~n~l~-~~-~~~~l~~l~~L~~L~l~~n~l~~l~~l~ 231 (632)
...+. .+++|++|.+.+|. +++.....+ ..++.|++|+++++... +. .......+++++.+.+.... .+.
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~-----~c~ 335 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN-----GCP 335 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-----CCc
Confidence 55555 37888888877777 566554444 45777888888887542 22 22234456666665543321 134
Q ss_pred CCCEEECCCCcc----cchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeee
Q 006752 232 SLECLNLSNCTI----DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLD 307 (632)
Q Consensus 232 ~L~~L~L~~~~l----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~ 307 (632)
.++.+.+.++.. .........+++++.+.+..+.............|+.|. ..+.. -......++.|+
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~-------~~~~~~~l~~L~ 407 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL-------RLCRSDSLRVLN 407 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH-------HhccCCccceEe
Confidence 444444443322 111123336777777777776633333223344455552 11111 111222378888
Q ss_pred ccCCC-CCchHHHHHHhcCCCCcEEEccCCcCc
Q 006752 308 LSSSM-IGDDSVEMVACVGANLRNLNLSNTRFS 339 (632)
Q Consensus 308 l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~ 339 (632)
++.+. .++.........+..++.+++.++...
T Consensus 408 l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 408 LSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cccCccccccchHHHhhhhhccccCCccCcccc
Confidence 88765 444444444332367788888887643
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.00 E-value=7.9e-06 Score=87.99 Aligned_cols=132 Identities=27% Similarity=0.346 Sum_probs=83.7
Q ss_pred CCCCcEEEeeCCCCCc-hhhhhhhhcCCCccEEeccCC-CCCch------hhhhcCCCCCeeeccCCC-CCchHHHHHHh
Q 006752 253 KAPLAKISLAGTTFIN-EREAFLYIETSLLSFLDVSNS-SLSRF------CFLTQMKALEHLDLSSSM-IGDDSVEMVAC 323 (632)
Q Consensus 253 ~~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~ls~n-~l~~~------~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~ 323 (632)
++.|+.+.+.++.... .........++.|+.|+++++ ..... .....+++|+.|+++.+. +++.....+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4455555555442221 111112335566666666552 11110 234456788888888877 88888888888
Q ss_pred cCCCCcEEEccCCc-CcchhHHHHHhcCCCCcEEEccCCCC-ChH-HHHHHhcCCCccEEEccC
Q 006752 324 VGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGTQI-DDY-AISYMSMMPSLKFIDISN 384 (632)
Q Consensus 324 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l-~~~-~~~~l~~~~~L~~L~Ls~ 384 (632)
.|++|++|.+.+|. +++.....+...|+.|++|++++|.. ++. ......+|++|+.|.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 77899999988887 78888888888889999999998764 333 233344677777765543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.97 E-value=1.2e-05 Score=71.43 Aligned_cols=101 Identities=17% Similarity=0.217 Sum_probs=76.8
Q ss_pred CCcEEEccCCCCC---CCCCCCCCCEEECCCCcccchhcccc-CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccC
Q 006752 213 RLSFLNLAWTGVT---KLPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 288 (632)
Q Consensus 213 ~L~~L~l~~n~l~---~l~~l~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~ 288 (632)
+...+|+++|.+. .+|.++.|.+|.+.+|+++.+.+.+. ..++|..|.+.+|.+..+........|++|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 4556666666554 35677888888888888888877776 5667899999998888777666677888899998888
Q ss_pred CCCCch-----hhhhcCCCCCeeeccCCCC
Q 006752 289 SSLSRF-----CFLTQMKALEHLDLSSSMI 313 (632)
Q Consensus 289 n~l~~~-----~~l~~~~~L~~L~l~~n~l 313 (632)
|.++.. ..+..+|+|+.||+..-.-
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhhhH
Confidence 888765 4566788888888876443
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.92 E-value=2.6e-06 Score=70.52 Aligned_cols=62 Identities=19% Similarity=0.355 Sum_probs=30.1
Q ss_pred CCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccc
Q 006752 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG 389 (632)
Q Consensus 326 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~ 389 (632)
..|+..++++|.+... |..|....|.++.|++++|++.+. |..++.++.|+.|+++.|.+..
T Consensus 53 ~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred ceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCcccc
Confidence 3444555555555432 222333444555555555555432 2235555555555555555544
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=7.9e-06 Score=54.62 Aligned_cols=37 Identities=30% Similarity=0.501 Sum_probs=20.5
Q ss_pred cccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752 475 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 475 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 512 (632)
+|++|++++|+|+++ |..++++++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCC
Confidence 456666666666653 3345666666666666666554
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.83 E-value=1.8e-05 Score=70.23 Aligned_cols=108 Identities=21% Similarity=0.306 Sum_probs=82.6
Q ss_pred CCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEE
Q 006752 278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357 (632)
Q Consensus 278 ~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 357 (632)
......+|+++|.+.....+..++.|.+|.+.+|+|+...|..-... ++|+.|.+.+|.+.....-.-...||+|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~-p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFL-PNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhc-cccceEEecCcchhhhhhcchhccCCccceee
Confidence 45667888999998888888999999999999999997766544444 89999999999876543322225699999999
Q ss_pred ccCCCCChHHH---HHHhcCCCccEEEccCCc
Q 006752 358 LSGTQIDDYAI---SYMSMMPSLKFIDISNTD 386 (632)
Q Consensus 358 L~~n~l~~~~~---~~l~~~~~L~~L~Ls~n~ 386 (632)
+-+|+++...- ..+..+++|+.||...-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 99998775322 234578999999987654
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=5.7e-05 Score=50.50 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCch
Q 006752 232 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE 269 (632)
Q Consensus 232 ~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 269 (632)
+|++|++++|+++++|+.+..+++|+.|++++|+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 46666666666666666566666666666666666544
No 63
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.52 E-value=1.4e-05 Score=83.82 Aligned_cols=296 Identities=25% Similarity=0.284 Sum_probs=157.7
Q ss_pred ccEEEcCCCCCCCchhHHhh----hCCCCcCEEeccCCCCCChhhHhhhcC----C-CCccEEEccCCCCCHhH----HH
Q 006752 92 LRSLNVADCRRVTSSALWAL----TGMTCLKELDLSRCVKVTDAGMKHLLS----I-STLEKLWLSETGLTADG----IA 158 (632)
Q Consensus 92 L~~L~L~~~~~i~~~~~~~l----~~l~~L~~L~L~~~~~l~~~~~~~l~~----l-~~L~~L~L~~n~i~~~~----~~ 158 (632)
+..|.|.+|. +.+.....+ ...+.|+.|++++| .+.+.+...+.+ . +.|++|++..|.++... ..
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 5666666666 544444333 34566666666666 455554444431 1 34556666666555432 23
Q ss_pred HhcCCCCCCEEEcCCCCCChH----HHHhcc----CCCCccEEEecCCCCCchhhH----hhcCCCC-CcEEEccCCCCC
Q 006752 159 LLSSLQNLSVLDLGGLPVTDL----VLRSLQ----VLTKLEYLDLWGSQVSNRGAA----VLKMFPR-LSFLNLAWTGVT 225 (632)
Q Consensus 159 ~~~~l~~L~~L~L~~n~i~~~----~~~~l~----~l~~L~~L~L~~n~l~~~~~~----~l~~l~~-L~~L~l~~n~l~ 225 (632)
.+.....++.++++.|.+... .+..+. ...++++|.+.+|.++..... .+...+. +..+++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 444566666666666665321 122222 355667777777666533222 2333444 555666666655
Q ss_pred C---------CCCC-CCCCEEECCCCccc-----chhccccCCCCCcEEEeeCCCCCchhhhhh---hhcCCCccEEecc
Q 006752 226 K---------LPNI-SSLECLNLSNCTID-----SILEGNENKAPLAKISLAGTTFINEREAFL---YIETSLLSFLDVS 287 (632)
Q Consensus 226 ~---------l~~l-~~L~~L~L~~~~l~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~~L~~L~ls 287 (632)
+ +..+ ..++.++++.|.++ .+...+..++.++++.++.|.+........ ......+.++.+.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~ 326 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLG 326 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcc
Confidence 3 2223 45677777777766 344555567777788888777765432211 1223444445555
Q ss_pred CCCCCch-------hhhhcCCCCCeeeccCCCCCchHHHHHH----hcCCCCcEEEccCCcCcchhHHH---HHhcCCCC
Q 006752 288 NSSLSRF-------CFLTQMKALEHLDLSSSMIGDDSVEMVA----CVGANLRNLNLSNTRFSSAGVGI---LAGHLPNL 353 (632)
Q Consensus 288 ~n~l~~~-------~~l~~~~~L~~L~l~~n~l~~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~L 353 (632)
++..... .....-........+++...+..-..+. .....+..+++..+.+.+..... .....+.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l 406 (478)
T KOG4308|consen 327 GTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKL 406 (478)
T ss_pred ccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchh
Confidence 4433221 1111112233344444544443332222 11133566666666655543322 22456789
Q ss_pred cEEEccCCCCChHHHHHHh-----cCCCccEEEccCCccccc
Q 006752 354 EILSLSGTQIDDYAISYMS-----MMPSLKFIDISNTDIKGM 390 (632)
Q Consensus 354 ~~L~L~~n~l~~~~~~~l~-----~~~~L~~L~Ls~n~i~~~ 390 (632)
+.++++.|...+..+..+. +. .++.++++.|.++..
T Consensus 407 ~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~ 447 (478)
T KOG4308|consen 407 EILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITAL 447 (478)
T ss_pred hhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhc
Confidence 9999999877665554443 44 888999999888754
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.51 E-value=0.00011 Score=63.11 Aligned_cols=122 Identities=17% Similarity=0.232 Sum_probs=56.3
Q ss_pred HhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCC
Q 006752 85 YLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQ 164 (632)
Q Consensus 85 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 164 (632)
.|.++++|+.+.+.. . +......+|.++++|+.+++.++ +...+...|.++++|+.+.+.. .+.......|..++
T Consensus 7 ~F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-C-eeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccc
Confidence 455666777777664 2 55555566777777777777663 4444555666676777777754 33333344566677
Q ss_pred CCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCC
Q 006752 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL 214 (632)
Q Consensus 165 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 214 (632)
+|+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 7777777654 444444556665 777777665 3334444566666555
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.46 E-value=0.00041 Score=70.15 Aligned_cols=54 Identities=9% Similarity=0.110 Sum_probs=24.7
Q ss_pred CCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCC
Q 006752 278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT 336 (632)
Q Consensus 278 ~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 336 (632)
+..++.|++++|.++.++.+ .++|++|.+++|.--...|..+. ++|++|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchhh---hhhhheEccCc
Confidence 45566666666655544421 23455555555332222222221 34555555554
No 66
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.42 E-value=1.2e-05 Score=84.30 Aligned_cols=43 Identities=37% Similarity=0.466 Sum_probs=22.7
Q ss_pred CCCCeeeccCCCCCchHHHHHHhc---CCCCcEEEccCCcCcchhH
Q 006752 301 KALEHLDLSSSMIGDDSVEMVACV---GANLRNLNLSNTRFSSAGV 343 (632)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~ 343 (632)
+.++.++++.|.+++.....+... ++.++++.+++|.+.+...
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 455666666666655444333322 1456666666666655443
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.36 E-value=0.00085 Score=67.92 Aligned_cols=35 Identities=9% Similarity=0.165 Sum_probs=18.3
Q ss_pred hhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCC
Q 006752 111 LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSET 150 (632)
Q Consensus 111 l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n 150 (632)
+..++++++|++++| .++... . -.++|++|.+++|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP--~--LP~sLtsL~Lsnc 82 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP--V--LPNELTEITIENC 82 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC--C--CCCCCcEEEccCC
Confidence 444666677777766 443321 1 1234666666654
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=2.7e-05 Score=72.44 Aligned_cols=59 Identities=25% Similarity=0.345 Sum_probs=31.4
Q ss_pred CCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccc
Q 006752 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG 389 (632)
Q Consensus 326 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~ 389 (632)
.+.++|+..+|.++++.. +..++.|+.|.|+-|+|+...| +..|++|+.|+|..|.|..
T Consensus 19 ~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s 77 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES 77 (388)
T ss_pred HHhhhhcccCCCccHHHH---HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc
Confidence 345555666655554332 2345566666666665554332 4555566666665555543
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.28 E-value=9.2e-05 Score=68.79 Aligned_cols=107 Identities=26% Similarity=0.359 Sum_probs=75.5
Q ss_pred cCCCccEEeccCCCCCchhhhhcCCCCCeeeccCC--CCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCc
Q 006752 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS--MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLE 354 (632)
Q Consensus 277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 354 (632)
....|+.+++.+..++.+..+..+++|++|.++.| ++..........+ ++|+++++++|++.....-.-...+++|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~-P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKA-PNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhC-CceeEEeecCCccccccccchhhhhcchh
Confidence 45677778888888888888888899999999999 5554443333333 99999999999887522211124577899
Q ss_pred EEEccCCCCC---hHHHHHHhcCCCccEEEccC
Q 006752 355 ILSLSGTQID---DYAISYMSMMPSLKFIDISN 384 (632)
Q Consensus 355 ~L~L~~n~l~---~~~~~~l~~~~~L~~L~Ls~ 384 (632)
.|++.+|..+ +--...|.-+++|++|+-..
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 9999988654 33344566778888876544
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.27 E-value=0.00019 Score=61.69 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=28.3
Q ss_pred HhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCc
Q 006752 445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 524 (632)
Q Consensus 445 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L 524 (632)
+|.++++++.+.+.+ .+.......|..+++|+.+++..+ +..+....|.++ .|+.+.+.+ .++.+....|.++++|
T Consensus 53 ~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 53 AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred eeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 345555555555544 333333344555556666665543 444444455555 555555554 3444444445544443
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.00028 Score=62.94 Aligned_cols=82 Identities=33% Similarity=0.548 Sum_probs=43.3
Q ss_pred ccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhC-CCCcCEEeccCCCCCChhhHhhhcCCCCccEE
Q 006752 67 AEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145 (632)
Q Consensus 67 l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~-l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L 145 (632)
++.+|=+++ .+.....+.+.+++.++.|.+.+|..+.+..++.+++ .++|+.|++++|+.+++.+...+..+++|+.|
T Consensus 103 IeaVDAsds-~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCc-hHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 444554444 2444444555555555555555555555555555552 34555555555555555555555555555555
Q ss_pred EccC
Q 006752 146 WLSE 149 (632)
Q Consensus 146 ~L~~ 149 (632)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5543
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00027 Score=65.71 Aligned_cols=70 Identities=23% Similarity=0.281 Sum_probs=41.1
Q ss_pred CCCCCCCCCCCEEECCCC--ccc-chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCc
Q 006752 224 VTKLPNISSLECLNLSNC--TID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR 293 (632)
Q Consensus 224 l~~l~~l~~L~~L~L~~~--~l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 293 (632)
++.+|.+++|++|.++.| ++. +++.....+++|+++.+++|++..+...-....+.+|..|++.+|..+.
T Consensus 58 ~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 58 LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 344667778888888888 443 4444444557777777777766543332233345555566665555443
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=7.6e-05 Score=69.54 Aligned_cols=82 Identities=21% Similarity=0.219 Sum_probs=42.6
Q ss_pred CCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHH-HHHHhcCCCCcEEEc
Q 006752 255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNL 333 (632)
Q Consensus 255 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l 333 (632)
+.++|+..||.+.++... ..++.|+.|.|+-|+++....+..|++|++|.|..|.|.+..- ..+.++ ++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIsic---~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknl-psLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISIC---EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNL-PSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHHHH---HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcC-chhhhHhh
Confidence 445555556555554322 2455566666666666665555566666666666655554221 222333 55555555
Q ss_pred cCCcCcc
Q 006752 334 SNTRFSS 340 (632)
Q Consensus 334 ~~n~l~~ 340 (632)
..|.-.+
T Consensus 96 ~ENPCc~ 102 (388)
T KOG2123|consen 96 DENPCCG 102 (388)
T ss_pred ccCCccc
Confidence 5554433
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.00068 Score=60.52 Aligned_cols=83 Identities=28% Similarity=0.376 Sum_probs=71.5
Q ss_pred CccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcC-CCCccEEEccCC-CCCHhHHHHhcCCCCCCE
Q 006752 91 YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLS-ISTLEKLWLSET-GLTADGIALLSSLQNLSV 168 (632)
Q Consensus 91 ~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~-l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~ 168 (632)
.++.++-+++. |..++.+.+.+++.++.|.+.+|..+.+...+.+++ .++|+.|++++| +|+......+..+++|+.
T Consensus 102 ~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 57788889888 888899999999999999999999888888888875 689999999988 788888888888889988
Q ss_pred EEcCCC
Q 006752 169 LDLGGL 174 (632)
Q Consensus 169 L~L~~n 174 (632)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 888753
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.92 E-value=0.017 Score=31.94 Aligned_cols=19 Identities=32% Similarity=0.308 Sum_probs=10.0
Q ss_pred CcEEeecCceeccCCCCCCC
Q 006752 500 LTNLSIRDAVLTNSGLGSFK 519 (632)
Q Consensus 500 L~~L~ls~N~l~~~~~~~l~ 519 (632)
|++||+++|+++. +|..|+
T Consensus 2 L~~Ldls~n~l~~-ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTS-IPSSFS 20 (22)
T ss_dssp ESEEEETSSEESE-EGTTTT
T ss_pred ccEEECCCCcCEe-CChhhc
Confidence 5566666666653 344443
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.57 E-value=0.013 Score=32.42 Aligned_cols=12 Identities=42% Similarity=0.415 Sum_probs=6.3
Q ss_pred ccccccccccCC
Q 006752 476 LIHLSLRNASLT 487 (632)
Q Consensus 476 L~~L~Ls~n~l~ 487 (632)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555555
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.01 E-value=0.073 Score=30.07 Aligned_cols=21 Identities=52% Similarity=0.654 Sum_probs=10.5
Q ss_pred CCCcEEEccCCCCChHHHHHH
Q 006752 351 PNLEILSLSGTQIDDYAISYM 371 (632)
Q Consensus 351 ~~L~~L~L~~n~l~~~~~~~l 371 (632)
++|++|++++|++++....++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455556666665555555444
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.54 E-value=0.13 Score=29.74 Aligned_cols=22 Identities=50% Similarity=0.896 Sum_probs=11.4
Q ss_pred CCcCEEeccCCCCCChhhHhhh
Q 006752 115 TCLKELDLSRCVKVTDAGMKHL 136 (632)
Q Consensus 115 ~~L~~L~L~~~~~l~~~~~~~l 136 (632)
++|++|+|++|..+++.+...+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4555555555555555544443
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.94 E-value=0.17 Score=29.26 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=17.3
Q ss_pred CCCccEEEcCCCCCCCchhHHhhh
Q 006752 89 FRYLRSLNVADCRRVTSSALWALT 112 (632)
Q Consensus 89 ~~~L~~L~L~~~~~i~~~~~~~l~ 112 (632)
|++|++|+|++|..+++.....++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 467788888888777777666654
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.12 E-value=0.18 Score=28.39 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=8.8
Q ss_pred CCCcEEEccCCcCcchhHHH
Q 006752 326 ANLRNLNLSNTRFSSAGVGI 345 (632)
Q Consensus 326 ~~L~~L~l~~n~l~~~~~~~ 345 (632)
++|++|++++|++++.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 44555555555555444443
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.89 E-value=0.023 Score=52.08 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=38.4
Q ss_pred hhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceec
Q 006752 446 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 511 (632)
Q Consensus 446 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~ 511 (632)
|+-++.|..||++.|++.- .|..+++...+..+++..|..+. .|.++...+.++++++.+|.+.
T Consensus 61 ~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchhhhccCcch
Confidence 3444556666666666554 45566666666666666666655 4556666666666666666544
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.30 E-value=0.22 Score=28.72 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=6.8
Q ss_pred cccccccccccCCCc
Q 006752 475 ELIHLSLRNASLTDV 489 (632)
Q Consensus 475 ~L~~L~Ls~n~l~~~ 489 (632)
+|+.|+|++|+|+.+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00369 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 344444444444443
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.30 E-value=0.22 Score=28.72 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=6.8
Q ss_pred cccccccccccCCCc
Q 006752 475 ELIHLSLRNASLTDV 489 (632)
Q Consensus 475 ~L~~L~Ls~n~l~~~ 489 (632)
+|+.|+|++|+|+.+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00370 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 344444444444443
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.83 E-value=0.033 Score=51.10 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=76.1
Q ss_pred HhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCc
Q 006752 445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 524 (632)
Q Consensus 445 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L 524 (632)
.+......+.||++.|++-. .-..|+.++.|..|+++.|.+.- .|..+.....+..+++..|..+.. |.++...+.+
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHSQQ-PKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchhhC-CccccccCCc
Confidence 45666788999999998876 34557778999999999999987 788999999999999999999885 8999999999
Q ss_pred ceEecCCCcc
Q 006752 525 KLLDLHGGWL 534 (632)
Q Consensus 525 ~~L~l~~N~l 534 (632)
++++.-+|+|
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 9999999997
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.03 E-value=0.37 Score=27.70 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=16.5
Q ss_pred CCCCcEEeecCceeccCCCCCC
Q 006752 497 LSKLTNLSIRDAVLTNSGLGSF 518 (632)
Q Consensus 497 l~~L~~L~ls~N~l~~~~~~~l 518 (632)
+++|+.|+|++|+|+.+.+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678888888888888755554
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.03 E-value=0.37 Score=27.70 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=16.5
Q ss_pred CCCCcEEeecCceeccCCCCCC
Q 006752 497 LSKLTNLSIRDAVLTNSGLGSF 518 (632)
Q Consensus 497 l~~L~~L~ls~N~l~~~~~~~l 518 (632)
+++|+.|+|++|+|+.+.+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678888888888888755554
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=87.01 E-value=0.28 Score=60.77 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=40.2
Q ss_pred eecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcC
Q 006752 504 SIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 548 (632)
Q Consensus 504 ~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~ 548 (632)
||++|+|+.+.+..|..+++|+.|+|++|++.|+|.+.++.++..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~ 45 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAE 45 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHH
Confidence 688999999888888899999999999999999999988887764
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=85.79 E-value=3.8 Score=42.10 Aligned_cols=106 Identities=24% Similarity=0.120 Sum_probs=52.0
Q ss_pred CCCcCEEeccCCCCCChhhHhhhcC--CCCccEEEccCCCCCHhHHHHhc---CCCCCCEEEcCCCCCChHHHHhc---c
Q 006752 114 MTCLKELDLSRCVKVTDAGMKHLLS--ISTLEKLWLSETGLTADGIALLS---SLQNLSVLDLGGLPVTDLVLRSL---Q 185 (632)
Q Consensus 114 l~~L~~L~L~~~~~l~~~~~~~l~~--l~~L~~L~L~~n~i~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~~~l---~ 185 (632)
-+.+++++++.| .+.+..+..+.. .+ +.+..|..+......+. .-..+.+++++.|...+.+|..+ .
T Consensus 164 npr~r~~dls~n-pi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a 238 (553)
T KOG4242|consen 164 NPRARQHDLSPN-PIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKA 238 (553)
T ss_pred cchhhhhccCCC-cccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhh
Confidence 345677777776 344443333331 12 45555555544332222 12346677777776655555433 2
Q ss_pred CCCCccEEEecCCCCCc---hhhHhhcCCCCCcEEEccCCCC
Q 006752 186 VLTKLEYLDLWGSQVSN---RGAAVLKMFPRLSFLNLAWTGV 224 (632)
Q Consensus 186 ~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~l~~n~l 224 (632)
.-..++.++.+...+.- ..+-..+.-+++...+++.|..
T Consensus 239 ~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 239 GTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 22345666666554431 1222334445666666666543
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.42 E-value=1.9 Score=25.39 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=13.1
Q ss_pred CCCcEEEccCCCCChHHHHHHh
Q 006752 351 PNLEILSLSGTQIDDYAISYMS 372 (632)
Q Consensus 351 ~~L~~L~L~~n~l~~~~~~~l~ 372 (632)
++|++|+|++|.+.+.....++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 3566666666666655554443
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.37 E-value=1.9 Score=25.34 Aligned_cols=20 Identities=40% Similarity=0.695 Sum_probs=9.4
Q ss_pred CCcEEEccCCcCcchhHHHH
Q 006752 327 NLRNLNLSNTRFSSAGVGIL 346 (632)
Q Consensus 327 ~L~~L~l~~n~l~~~~~~~~ 346 (632)
+|++|+|++|.+.+.....+
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 3 SLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred ccCEEECCCCCCCHHHHHHH
Confidence 44555555555544444333
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.30 E-value=4.9 Score=42.24 Aligned_cols=10 Identities=10% Similarity=-0.206 Sum_probs=4.7
Q ss_pred cccccCCCCC
Q 006752 614 SLSLARPDDS 623 (632)
Q Consensus 614 ~l~g~ip~~~ 623 (632)
..||-+++|.
T Consensus 544 ~~tGln~~~s 553 (585)
T KOG3763|consen 544 EETGLNSEWS 553 (585)
T ss_pred HHhcCChHHH
Confidence 3455555443
No 92
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.89 E-value=5.9 Score=22.87 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=6.0
Q ss_pred CCcEEEccCCCCCC
Q 006752 213 RLSFLNLAWTGVTK 226 (632)
Q Consensus 213 ~L~~L~l~~n~l~~ 226 (632)
+|+.|++++|.|+.
T Consensus 3 ~L~~L~L~~NkI~~ 16 (26)
T smart00365 3 NLEELDLSQNKIKK 16 (26)
T ss_pred ccCEEECCCCccce
Confidence 34444444444433
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.11 E-value=5.8 Score=41.72 Aligned_cols=64 Identities=22% Similarity=0.160 Sum_probs=31.6
Q ss_pred CCCCcCEEeccCCCCCChhhHhhhc-CCCCccEEEccCC--CCCHhHHHHhc--CCCCCCEEEcCCCCCCh
Q 006752 113 GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSET--GLTADGIALLS--SLQNLSVLDLGGLPVTD 178 (632)
Q Consensus 113 ~l~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~L~~n--~i~~~~~~~~~--~l~~L~~L~L~~n~i~~ 178 (632)
+.+.+..+.|++|+...-.....+. ..|+|+.|+|++| .+.. ..++. +...|++|.+.||++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 4555666666665322222333333 3566666666666 2222 11222 23346667777766643
No 94
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=57.21 E-value=6.9 Score=22.56 Aligned_cols=17 Identities=47% Similarity=0.536 Sum_probs=9.8
Q ss_pred CCCEEECCCCcccchhc
Q 006752 232 SLECLNLSNCTIDSILE 248 (632)
Q Consensus 232 ~L~~L~L~~~~l~~~~~ 248 (632)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45556666666655554
No 95
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=29.52 E-value=74 Score=29.40 Aligned_cols=9 Identities=44% Similarity=0.590 Sum_probs=3.6
Q ss_pred CCCeeeccC
Q 006752 302 ALEHLDLSS 310 (632)
Q Consensus 302 ~L~~L~l~~ 310 (632)
+|+.-|+++
T Consensus 172 ~lerADl~g 180 (302)
T KOG1665|consen 172 KLERADLEG 180 (302)
T ss_pred hhccccccc
Confidence 334444443
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.32 E-value=40 Score=43.21 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=26.1
Q ss_pred ccCccCCCCCccccccCcccccccccccccCCC
Q 006752 456 NLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 488 (632)
Q Consensus 456 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 488 (632)
||++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 678888888777778888888888888887653
No 97
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=20.04 E-value=70 Score=33.38 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=14.8
Q ss_pred cCCCccEEEccCCccccccCC
Q 006752 373 MMPSLKFIDISNTDIKGMYPS 393 (632)
Q Consensus 373 ~~~~L~~L~Ls~n~i~~~~~~ 393 (632)
.-+.+++++++.|.+....|.
T Consensus 163 pnpr~r~~dls~npi~dkvpi 183 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPI 183 (553)
T ss_pred CcchhhhhccCCCcccccCCc
Confidence 345678888888887766554
Done!