Query 006752
Match_columns 632
No_of_seqs 551 out of 4686
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 08:01:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.2E-56 1.1E-60 503.1 11.3 439 64-516 99-556 (768)
2 3rgz_A Protein brassinosteroid 100.0 4E-55 1.4E-59 494.1 10.0 529 63-622 124-723 (768)
3 3t6q_A CD180 antigen; protein- 100.0 3E-51 1E-55 452.2 17.5 488 24-547 14-572 (606)
4 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-49 7.5E-54 437.4 11.5 482 25-548 14-571 (606)
5 3t6q_A CD180 antigen; protein- 100.0 1.8E-47 6.1E-52 422.1 18.6 468 67-581 14-549 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 3.4E-48 1.1E-52 433.7 12.7 524 25-620 7-626 (680)
7 2z63_A TOLL-like receptor 4, v 100.0 1.2E-47 4E-52 420.6 12.5 457 24-543 9-539 (570)
8 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-45 1.2E-49 409.3 20.3 493 64-572 48-626 (680)
9 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-44 3.6E-49 395.1 19.3 452 27-542 10-517 (549)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-45 6.6E-50 419.3 9.7 482 26-546 8-571 (844)
11 3vq2_A TLR4, TOLL-like recepto 100.0 3.6E-44 1.2E-48 395.7 18.0 425 67-534 13-509 (606)
12 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-43 4.8E-48 393.5 12.8 461 25-547 34-592 (635)
13 2z7x_B TOLL-like receptor 1, v 100.0 3.5E-43 1.2E-47 380.4 15.3 419 65-547 21-494 (520)
14 4eco_A Uncharacterized protein 100.0 4.2E-43 1.4E-47 387.0 15.7 411 65-536 81-601 (636)
15 3j0a_A TOLL-like receptor 5; m 100.0 5.8E-43 2E-47 398.9 16.4 487 68-587 7-561 (844)
16 4ecn_A Leucine-rich repeat pro 100.0 7.7E-43 2.6E-47 390.9 14.1 408 65-534 323-839 (876)
17 2z63_A TOLL-like receptor 4, v 100.0 6.7E-43 2.3E-47 382.8 12.1 405 90-534 28-506 (570)
18 2z81_A CD282 antigen, TOLL-lik 100.0 7.9E-42 2.7E-46 372.4 18.6 463 64-581 4-499 (549)
19 4ecn_A Leucine-rich repeat pro 100.0 1.1E-40 3.6E-45 373.6 18.4 424 90-578 323-850 (876)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.8E-41 2.3E-45 365.4 12.8 414 66-545 53-520 (562)
21 4eco_A Uncharacterized protein 100.0 1E-40 3.6E-45 367.9 5.8 392 90-534 81-578 (636)
22 2z7x_B TOLL-like receptor 1, v 100.0 2.4E-40 8.1E-45 358.1 6.5 396 68-534 3-433 (520)
23 3v47_A TOLL-like receptor 5B a 100.0 1.5E-38 5.2E-43 338.1 20.0 372 93-539 13-412 (455)
24 3v47_A TOLL-like receptor 5B a 100.0 8.1E-38 2.8E-42 332.5 21.4 366 65-515 30-412 (455)
25 1o6v_A Internalin A; bacterial 100.0 2.8E-36 9.4E-41 321.0 28.2 342 90-513 46-390 (466)
26 1o6v_A Internalin A; bacterial 100.0 7.1E-36 2.4E-40 317.9 26.5 343 113-536 44-389 (466)
27 1jl5_A Outer protein YOPM; leu 100.0 6.7E-37 2.3E-41 322.8 13.9 403 65-589 11-432 (454)
28 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-36 1.2E-40 334.0 19.2 406 90-534 52-530 (635)
29 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-35 3.7E-40 316.7 20.9 401 65-553 3-460 (461)
30 1jl5_A Outer protein YOPM; leu 100.0 1.8E-36 6.3E-41 319.5 14.3 406 89-626 10-421 (454)
31 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.3E-37 1.5E-41 335.4 9.5 452 64-572 30-514 (562)
32 3ogk_B Coronatine-insensitive 100.0 2.8E-35 9.7E-40 323.8 22.4 416 64-532 72-548 (592)
33 3bz5_A Internalin-J, INLJ; leu 100.0 3.2E-35 1.1E-39 310.3 20.0 264 86-393 38-304 (457)
34 3bz5_A Internalin-J, INLJ; leu 100.0 4.4E-34 1.5E-38 301.6 21.9 345 64-519 41-395 (457)
35 4fmz_A Internalin; leucine ric 100.0 2E-33 6.7E-38 287.5 25.3 304 138-534 42-345 (347)
36 2id5_A Lingo-1, leucine rich r 100.0 1.7E-34 6E-39 308.5 16.9 308 165-548 33-346 (477)
37 4fmz_A Internalin; leucine ric 100.0 3.3E-33 1.1E-37 285.8 23.7 308 110-511 39-346 (347)
38 2p1m_B Transport inhibitor res 100.0 3.4E-34 1.1E-38 315.4 17.1 426 64-553 65-536 (594)
39 1z7x_W Ribonuclease inhibitor; 100.0 3.3E-33 1.1E-37 297.5 21.0 372 90-549 3-424 (461)
40 3o6n_A APL1; leucine-rich repe 100.0 5.4E-33 1.8E-37 288.9 20.6 315 139-548 44-364 (390)
41 3ogk_B Coronatine-insensitive 100.0 1.1E-33 3.6E-38 311.2 14.5 433 68-553 53-543 (592)
42 2id5_A Lingo-1, leucine rich r 100.0 5E-33 1.7E-37 297.2 17.7 299 116-488 33-334 (477)
43 3o6n_A APL1; leucine-rich repe 100.0 6.9E-33 2.4E-37 288.0 15.0 288 89-390 44-333 (390)
44 3oja_B Anopheles plasmodium-re 100.0 3.3E-32 1.1E-36 298.4 20.9 308 139-540 50-363 (597)
45 3oja_B Anopheles plasmodium-re 100.0 3.9E-32 1.3E-36 297.8 14.6 240 89-339 50-291 (597)
46 2p1m_B Transport inhibitor res 100.0 1.1E-29 3.7E-34 279.4 20.3 391 63-508 103-541 (594)
47 1xku_A Decorin; proteoglycan, 100.0 6.6E-29 2.3E-33 251.8 19.0 288 140-533 31-330 (330)
48 1xku_A Decorin; proteoglycan, 100.0 6.3E-29 2.2E-33 252.0 15.0 289 116-509 32-330 (330)
49 1ogq_A PGIP-2, polygalacturona 100.0 5.8E-30 2E-34 257.0 6.9 250 231-537 50-306 (313)
50 2ft3_A Biglycan; proteoglycan, 100.0 5.6E-29 1.9E-33 252.5 13.7 288 140-533 33-331 (332)
51 2z66_A Variable lymphocyte rec 100.0 6.6E-29 2.3E-33 249.0 10.7 256 236-547 12-273 (306)
52 2ft3_A Biglycan; proteoglycan, 100.0 1.7E-28 5.8E-33 248.9 13.0 148 116-271 34-189 (332)
53 3zyj_A Leucine-rich repeat-con 99.9 4.6E-28 1.6E-32 255.6 12.8 257 233-547 45-304 (440)
54 3zyi_A Leucine-rich repeat-con 99.9 7.2E-28 2.5E-32 255.1 13.2 256 234-547 57-315 (452)
55 2z80_A TOLL-like receptor 2, v 99.9 9.4E-28 3.2E-32 245.7 10.6 261 232-546 53-326 (353)
56 1ogq_A PGIP-2, polygalacturona 99.9 2.5E-28 8.6E-33 245.1 6.0 251 165-512 51-306 (313)
57 1ozn_A Reticulon 4 receptor; N 99.9 1.5E-27 5.1E-32 236.5 10.1 236 279-577 32-270 (285)
58 3o53_A Protein LRIM1, AGAP0063 99.9 5.1E-28 1.8E-32 243.5 4.8 269 142-517 12-282 (317)
59 2z66_A Variable lymphocyte rec 99.9 3.7E-26 1.3E-30 229.0 11.3 246 215-513 10-263 (306)
60 2z80_A TOLL-like receptor 2, v 99.9 2.9E-25 9.9E-30 227.2 17.2 252 113-389 29-291 (353)
61 3g06_A SSPH2 (leucine-rich rep 99.9 1.8E-24 6.2E-29 234.7 22.2 264 165-544 41-305 (622)
62 4fcg_A Uncharacterized protein 99.9 6.6E-26 2.3E-30 228.8 9.5 233 230-534 80-313 (328)
63 1ozn_A Reticulon 4 receptor; N 99.9 2.1E-25 7.1E-30 221.1 12.3 222 235-512 15-239 (285)
64 3o53_A Protein LRIM1, AGAP0063 99.9 3.4E-26 1.1E-30 230.2 6.6 265 117-393 12-281 (317)
65 4fcg_A Uncharacterized protein 99.9 8.8E-26 3E-30 227.9 9.6 232 210-513 79-316 (328)
66 3g06_A SSPH2 (leucine-rich rep 99.9 9.5E-25 3.2E-29 237.0 17.6 268 116-498 41-308 (622)
67 3zyj_A Leucine-rich repeat-con 99.9 1.4E-24 4.9E-29 228.8 15.5 243 214-511 45-292 (440)
68 1wwl_A Monocyte differentiatio 99.9 3E-26 1E-30 230.0 1.7 246 231-534 43-308 (312)
69 3zyi_A Leucine-rich repeat-con 99.9 1.6E-24 5.3E-29 229.4 14.8 243 215-512 57-304 (452)
70 3oja_A Leucine-rich immune mol 99.9 5.8E-25 2E-29 234.0 11.4 227 252-543 32-258 (487)
71 1wwl_A Monocyte differentiatio 99.9 4.3E-26 1.5E-30 228.9 2.2 253 184-513 39-311 (312)
72 3oja_A Leucine-rich immune mol 99.9 1.1E-25 3.6E-30 239.7 4.6 235 165-506 35-270 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 1.1E-24 3.8E-29 214.7 8.8 206 280-539 29-241 (276)
74 2o6q_A Variable lymphocyte rec 99.9 6.2E-24 2.1E-28 208.5 11.1 205 281-539 18-222 (270)
75 1p9a_G Platelet glycoprotein I 99.9 1.1E-23 3.8E-28 208.4 12.3 213 277-547 8-220 (290)
76 3rfs_A Internalin B, repeat mo 99.9 1.1E-24 3.9E-29 213.9 5.1 230 279-581 19-248 (272)
77 2ca6_A RAN GTPase-activating p 99.9 1.1E-23 3.6E-28 218.3 10.0 256 245-548 23-330 (386)
78 2ca6_A RAN GTPase-activating p 99.9 1E-22 3.4E-27 211.0 17.1 252 84-361 26-340 (386)
79 2ast_B S-phase kinase-associat 99.9 1.7E-22 6E-27 205.2 17.8 256 188-520 47-315 (336)
80 3goz_A Leucine-rich repeat-con 99.9 5.7E-23 1.9E-27 210.7 13.6 255 235-536 2-298 (362)
81 2ast_B S-phase kinase-associat 99.9 1.2E-22 4.3E-27 206.2 15.0 235 279-577 70-315 (336)
82 2z62_A TOLL-like receptor 4, v 99.9 6.8E-23 2.3E-27 201.9 10.7 223 236-512 12-238 (276)
83 3rfs_A Internalin B, repeat mo 99.9 5.9E-23 2E-27 201.6 7.9 195 278-534 40-234 (272)
84 3goz_A Leucine-rich repeat-con 99.9 3.5E-22 1.2E-26 204.8 12.8 251 70-342 3-300 (362)
85 2o6q_A Variable lymphocyte rec 99.9 2.5E-22 8.4E-27 197.0 10.2 180 280-512 38-219 (270)
86 3m19_A Variable lymphocyte rec 99.9 4.9E-22 1.7E-26 192.7 10.0 191 301-547 14-205 (251)
87 4glp_A Monocyte differentiatio 99.9 5.7E-22 1.9E-26 198.7 9.7 228 253-535 63-307 (310)
88 1h6u_A Internalin H; cell adhe 99.9 2.5E-21 8.7E-26 193.4 13.7 81 448-534 149-229 (308)
89 4glp_A Monocyte differentiatio 99.8 1.7E-21 5.7E-26 195.2 8.6 219 91-315 65-308 (310)
90 1h6u_A Internalin H; cell adhe 99.8 1.1E-20 3.7E-25 188.9 13.9 192 231-513 41-232 (308)
91 1p9a_G Platelet glycoprotein I 99.8 3.1E-21 1.1E-25 190.9 9.7 202 229-512 8-209 (290)
92 2xwt_C Thyrotropin receptor; s 99.8 1.6E-21 5.3E-26 187.7 4.9 195 280-533 32-237 (239)
93 3m19_A Variable lymphocyte rec 99.8 1.9E-20 6.6E-25 181.4 8.9 180 280-513 15-194 (251)
94 2v9t_B SLIT homolog 2 protein 99.8 7.2E-20 2.5E-24 173.2 10.4 164 329-547 14-177 (220)
95 2v70_A SLIT-2, SLIT homolog 2 99.8 8.3E-20 2.8E-24 172.8 9.8 165 329-548 14-179 (220)
96 2xwt_C Thyrotropin receptor; s 99.8 2.8E-20 9.5E-25 178.9 6.3 194 255-508 32-236 (239)
97 2o6s_A Variable lymphocyte rec 99.8 8E-20 2.7E-24 171.7 6.9 182 329-581 10-191 (208)
98 1h6t_A Internalin B; cell adhe 99.8 1.4E-19 4.8E-24 179.1 8.3 172 277-513 44-215 (291)
99 2xot_A Amphoterin-induced prot 99.8 3E-20 1E-24 190.1 3.5 186 304-544 21-211 (361)
100 1h6t_A Internalin B; cell adhe 99.8 8.9E-19 3E-23 173.3 12.6 191 279-536 24-214 (291)
101 3e6j_A Variable lymphocyte rec 99.8 2.7E-18 9.1E-23 163.6 11.2 157 327-539 20-176 (229)
102 1m9s_A Internalin B; cell inva 99.7 1.3E-18 4.5E-23 188.5 9.3 197 257-521 24-220 (605)
103 2o6s_A Variable lymphocyte rec 99.7 7.5E-19 2.6E-23 165.0 5.8 161 301-521 28-188 (208)
104 4ay9_X Follicle-stimulating ho 99.7 6E-19 2.1E-23 179.7 4.7 239 216-534 13-258 (350)
105 1m9s_A Internalin B; cell inva 99.7 8.6E-18 2.9E-22 182.2 13.9 188 280-534 22-209 (605)
106 4ay9_X Follicle-stimulating ho 99.7 1.6E-18 5.6E-23 176.5 7.0 235 191-508 12-256 (350)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 3.4E-18 1.2E-22 161.7 7.6 155 304-513 14-168 (220)
108 3cvr_A Invasion plasmid antige 99.7 7.7E-18 2.6E-22 180.5 10.4 194 213-499 60-255 (571)
109 1xeu_A Internalin C; cellular 99.7 2.1E-18 7.2E-23 167.9 4.6 170 278-513 18-187 (263)
110 2v9t_B SLIT homolog 2 protein 99.7 1.7E-17 5.7E-22 156.9 7.9 153 304-512 14-166 (220)
111 3sb4_A Hypothetical leucine ri 99.7 1.5E-17 5E-22 168.0 7.9 82 445-528 245-327 (329)
112 3cvr_A Invasion plasmid antige 99.7 8.8E-17 3E-21 172.3 14.2 165 140-324 80-253 (571)
113 2xot_A Amphoterin-induced prot 99.7 8.7E-18 3E-22 171.8 6.1 127 257-389 21-150 (361)
114 1xeu_A Internalin C; cellular 99.7 1.3E-17 4.5E-22 162.2 6.8 170 299-536 17-186 (263)
115 4ezg_A Putative uncharacterize 99.7 3.7E-17 1.3E-21 151.8 9.0 153 299-512 42-195 (197)
116 3sb4_A Hypothetical leucine ri 99.7 2.6E-17 8.8E-22 166.1 8.5 280 163-505 24-328 (329)
117 1w8a_A SLIT protein; signaling 99.7 3.3E-17 1.1E-21 151.3 7.8 142 354-548 11-152 (192)
118 4ezg_A Putative uncharacterize 99.7 6.2E-16 2.1E-20 143.5 15.1 151 64-225 43-194 (197)
119 3e6j_A Variable lymphocyte rec 99.7 1E-16 3.6E-21 152.5 8.3 154 303-513 21-174 (229)
120 2wfh_A SLIT homolog 2 protein 99.7 1.6E-16 5.3E-21 146.8 9.1 140 354-548 13-152 (193)
121 1dce_A Protein (RAB geranylger 99.6 6.3E-18 2.1E-22 182.2 -1.9 84 448-534 461-545 (567)
122 4b8c_D Glucose-repressible alc 99.6 4.5E-16 1.5E-20 173.1 9.4 196 357-618 207-406 (727)
123 1dce_A Protein (RAB geranylger 99.6 4.2E-17 1.4E-21 175.7 -0.3 195 276-529 346-567 (567)
124 2o6r_A Variable lymphocyte rec 99.6 2.4E-15 8.1E-20 137.0 11.0 140 353-546 9-149 (177)
125 2ell_A Acidic leucine-rich nuc 99.6 4.2E-16 1.4E-20 140.7 3.4 87 448-534 69-159 (168)
126 2je0_A Acidic leucine-rich nuc 99.6 3.6E-16 1.2E-20 138.0 2.9 127 351-530 17-148 (149)
127 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.6E-20 138.1 4.4 134 326-513 24-162 (168)
128 1w8a_A SLIT protein; signaling 99.6 3.3E-15 1.1E-19 137.9 6.9 67 446-512 74-140 (192)
129 3un9_A NLR family member X1; l 99.5 1.1E-15 3.7E-20 156.0 3.4 187 301-534 72-282 (372)
130 4fs7_A Uncharacterized protein 99.5 1.1E-14 3.7E-19 150.8 10.2 334 103-527 59-393 (394)
131 2je0_A Acidic leucine-rich nuc 99.5 1.1E-14 3.7E-19 128.5 8.2 128 89-220 16-148 (149)
132 4fdw_A Leucine rich hypothetic 99.5 5.7E-14 1.9E-18 144.7 13.4 264 187-534 112-382 (401)
133 2wfh_A SLIT homolog 2 protein 99.5 2.3E-14 7.7E-19 132.2 8.7 128 329-512 13-140 (193)
134 2o6r_A Variable lymphocyte rec 99.5 2.3E-14 8E-19 130.4 8.6 131 328-513 9-139 (177)
135 4fs7_A Uncharacterized protein 99.5 2.9E-14 9.9E-19 147.5 8.8 324 84-503 65-393 (394)
136 1a9n_A U2A', U2A'; complex (nu 99.5 8.3E-15 2.9E-19 133.2 3.6 130 349-534 17-152 (176)
137 3g39_A Variable lymphocyte rec 99.5 9.2E-14 3.1E-18 125.3 9.9 95 450-544 30-125 (170)
138 4b8c_D Glucose-repressible alc 99.5 1.4E-14 5E-19 161.0 5.5 176 205-389 217-405 (727)
139 4fdw_A Leucine rich hypothetic 99.5 1.4E-13 4.8E-18 141.7 11.6 238 231-534 113-357 (401)
140 1a9n_A U2A', U2A'; complex (nu 99.5 2.5E-14 8.5E-19 130.0 5.2 131 326-512 19-154 (176)
141 1ds9_A Outer arm dynein; leuci 99.5 8.8E-16 3E-20 142.6 -4.6 129 348-534 45-184 (198)
142 3un9_A NLR family member X1; l 99.5 3.1E-13 1.1E-17 137.8 13.7 162 61-225 68-252 (372)
143 2r9u_A Variable lymphocyte rec 99.4 2.8E-13 9.5E-18 122.5 10.0 90 450-539 33-122 (174)
144 1ds9_A Outer arm dynein; leuci 99.4 2.2E-15 7.7E-20 139.9 -6.4 156 297-512 14-186 (198)
145 4gt6_A Cell surface protein; l 99.4 2.4E-12 8.2E-17 133.1 12.5 330 107-534 55-390 (394)
146 3g39_A Variable lymphocyte rec 99.3 1.7E-12 5.8E-17 116.9 6.1 108 352-513 10-117 (170)
147 2ifg_A High affinity nerve gro 99.3 3.7E-12 1.3E-16 129.3 7.1 113 434-547 14-128 (347)
148 2r9u_A Variable lymphocyte rec 99.3 3.7E-12 1.3E-16 115.1 6.0 107 353-513 14-120 (174)
149 4gt6_A Cell surface protein; l 99.2 2.7E-11 9.3E-16 125.1 10.0 152 84-241 57-215 (394)
150 4h09_A Hypothetical leucine ri 99.0 7.3E-10 2.5E-14 113.8 12.1 82 85-173 41-122 (379)
151 2ifg_A High affinity nerve gro 99.0 1.7E-10 5.8E-15 117.0 5.7 104 330-488 12-117 (347)
152 2ra8_A Uncharacterized protein 99.0 8.4E-09 2.9E-13 104.1 16.4 200 164-386 107-341 (362)
153 4h09_A Hypothetical leucine ri 99.0 2.6E-09 8.8E-14 109.7 12.5 303 134-522 40-356 (379)
154 2ra8_A Uncharacterized protein 99.0 4.6E-09 1.6E-13 106.0 13.7 201 139-362 106-341 (362)
155 3e4g_A ATP synthase subunit S, 99.0 5.6E-10 1.9E-14 98.8 5.9 84 66-150 62-149 (176)
156 1io0_A Tropomodulin; LRR prote 98.9 1.6E-08 5.4E-13 92.0 11.7 119 81-201 27-164 (185)
157 3e4g_A ATP synthase subunit S, 98.8 6.5E-09 2.2E-13 92.0 7.1 88 90-178 61-154 (176)
158 1io0_A Tropomodulin; LRR prote 98.8 2.6E-08 9E-13 90.5 11.2 114 276-389 33-165 (185)
159 3rw6_A Nuclear RNA export fact 98.3 6.4E-07 2.2E-11 85.5 5.4 58 445-504 191-257 (267)
160 3rw6_A Nuclear RNA export fact 98.2 3.1E-07 1.1E-11 87.7 2.2 108 445-554 136-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 98.1 1.1E-05 3.7E-10 72.7 10.4 112 277-388 39-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 98.0 4.8E-05 1.6E-09 68.5 12.3 116 83-199 34-168 (197)
163 3rfe_A Platelet glycoprotein I 97.6 3.9E-05 1.3E-09 64.7 4.6 69 478-548 12-81 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0021 7.3E-08 53.8 4.5 57 453-511 11-68 (130)
165 2lz0_A Uncharacterized protein 69.3 4.7 0.00016 31.3 4.0 46 461-507 7-52 (100)
166 2lz0_A Uncharacterized protein 68.2 8.8 0.0003 29.7 5.4 46 485-531 7-52 (100)
167 4h62_V Mediator of RNA polymer 28.8 45 0.0015 18.2 2.3 17 2-18 10-26 (31)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.2e-56 Score=503.05 Aligned_cols=439 Identities=20% Similarity=0.210 Sum_probs=320.4
Q ss_pred cCcccEEeccCCCCCCHHHHH--HhccCCCccEEEcCCCCCCCchhHHhh-hCCCCcCEEeccCCCCCChhhHhh---hc
Q 006752 64 KHNAEAIELRGENSVDAEWMA--YLGAFRYLRSLNVADCRRVTSSALWAL-TGMTCLKELDLSRCVKVTDAGMKH---LL 137 (632)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~i~~~~~~~l-~~l~~L~~L~L~~~~~l~~~~~~~---l~ 137 (632)
+++|++|+|++|. +.+.++. .++++++|++|++++|. +....+..+ .++++|++|++++| .+++..+.. +.
T Consensus 99 l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~ 175 (768)
T 3rgz_A 99 SASLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSD 175 (768)
T ss_dssp CTTCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTT
T ss_pred CCCCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhc
Confidence 4688999999884 5555555 78889999999999887 554444444 68889999999998 676665555 67
Q ss_pred CCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEE
Q 006752 138 SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL 217 (632)
Q Consensus 138 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 217 (632)
++++|++|++++|.+++..+ +..+++|++|++++|.+.+..|. ++.+++|++|++++|.+++..|..+..+++|++|
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp CCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred cCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 88999999999998876443 37889999999999999887665 8999999999999999999999999999999999
Q ss_pred EccCCCCCC-CC--CCCCCCEEECCCCccc-chhccccC-CCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCC
Q 006752 218 NLAWTGVTK-LP--NISSLECLNLSNCTID-SILEGNEN-KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292 (632)
Q Consensus 218 ~l~~n~l~~-l~--~l~~L~~L~L~~~~l~-~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 292 (632)
++++|.+.+ ++ .+++|++|++++|.+. .+|..++. +++|++|++++|.+.+..+. .+..+++|++|++++|.+.
T Consensus 253 ~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp ECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG-GGGGCTTCCEEECCSSEEE
T ss_pred ECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch-HHhcCCCccEEECCCCccc
Confidence 999998874 22 6789999999999998 78888776 49999999999998864433 3568999999999999987
Q ss_pred ch---hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHh-cCCCCcEEEccCCCCChHHH
Q 006752 293 RF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG-HLPNLEILSLSGTQIDDYAI 368 (632)
Q Consensus 293 ~~---~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~ 368 (632)
+. ..+..+++|++|++++|.+++..|..+....++|++|++++|++++..+..+.. .+++|++|++++|++++..|
T Consensus 332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 411 (768)
T 3rgz_A 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411 (768)
T ss_dssp EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC
Confidence 43 348899999999999999988888888877349999999999998876655422 16789999999999998888
Q ss_pred HHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccc-cccccc-ccchhhhccccccccc--chH
Q 006752 369 SYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYV-IFPSSV-LAGFIQQVGAETDLVL--SLT 444 (632)
Q Consensus 369 ~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~~l~~~~~~l~--~~~ 444 (632)
..++.+++|++|++++|++++.+|..+..+. .+ ..+........ .+|... ....++.|++++|.+. ...
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L------~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 484 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KL------RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TC------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred HHHhcCCCCCEEECcCCcccCcccHHHhcCC-CC------CEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH
Confidence 8999999999999999999988887654321 11 11111111111 122221 1233445555555442 123
Q ss_pred HhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCC
Q 006752 445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG 516 (632)
Q Consensus 445 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~ 516 (632)
.+.++++|++|++++|++++.+|.+++.+++|++|+|++|++++.+|..+..+++|++|++++|++++.+|.
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 455555555555555555555555555555555555555555555555555555555555555555555444
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4e-55 Score=494.05 Aligned_cols=529 Identities=19% Similarity=0.172 Sum_probs=412.1
Q ss_pred hcCcccEEeccCCCCCCHHHHHH-hccCCCccEEEcCCCCCCCchhHHh---hhCCCCcCEEeccCCCCCChhhHhhhcC
Q 006752 63 FKHNAEAIELRGENSVDAEWMAY-LGAFRYLRSLNVADCRRVTSSALWA---LTGMTCLKELDLSRCVKVTDAGMKHLLS 138 (632)
Q Consensus 63 ~~~~l~~L~Ls~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~i~~~~~~~---l~~l~~L~~L~L~~~~~l~~~~~~~l~~ 138 (632)
.+++|++|+|++|. +.+..+.. +.++++|++|++++|. +++..+.. +.++++|++|++++| .+.+. ..+..
T Consensus 124 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~--~~~~~ 198 (768)
T 3rgz_A 124 SCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGN-KISGD--VDVSR 198 (768)
T ss_dssp GCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSS-EEESC--CBCTT
T ss_pred CCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCC-ccccc--CCccc
Confidence 36899999999995 33333333 3789999999999998 87777666 789999999999999 45443 23478
Q ss_pred CCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEE
Q 006752 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218 (632)
Q Consensus 139 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 218 (632)
+++|++|++++|.+++..+. +..+++|++|++++|.+.+..|..++.+++|++|++++|.+++..|.. .+++|++|+
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~ 275 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEE
Confidence 99999999999999886665 899999999999999999999999999999999999999998776654 889999999
Q ss_pred ccCCCCC-CCC----C-CCCCCEEECCCCccc-chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCC
Q 006752 219 LAWTGVT-KLP----N-ISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL 291 (632)
Q Consensus 219 l~~n~l~-~l~----~-l~~L~~L~L~~~~l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l 291 (632)
+++|.++ .++ . +++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 9999876 333 3 489999999999998 67778889999999999999998544433466899999999999998
Q ss_pred Cch--hhhhcCC-CCCeeeccCCCCCchHHHHHHhc-CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHH
Q 006752 292 SRF--CFLTQMK-ALEHLDLSSSMIGDDSVEMVACV-GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 367 (632)
Q Consensus 292 ~~~--~~l~~~~-~L~~L~l~~n~l~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 367 (632)
++. ..+..++ +|++|++++|.+++..+..+... .++|++|++++|++++..+..+ +.+++|++|++++|++++..
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCC
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCcc
Confidence 744 5566666 89999999998887666655541 2689999999998888777666 67889999999999888888
Q ss_pred HHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccc-cccccc-ccchhhhccccccccc--ch
Q 006752 368 ISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYV-IFPSSV-LAGFIQQVGAETDLVL--SL 443 (632)
Q Consensus 368 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~~l~~~~~~l~--~~ 443 (632)
|..++.+++|++|++++|.+++.+|..+..+ .. .+.+........ .+|... -...++.|++++|.+. ..
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~------L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KT------LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TT------CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CC------ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence 8888888999999999999888878765432 11 222222222222 233332 2356889999999884 23
Q ss_pred HHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCC-----------------------
Q 006752 444 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL----------------------- 500 (632)
Q Consensus 444 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------- 500 (632)
..++++++|++|+|++|.+++.+|..++.+++|+.|++++|++++.+|..+..+..+
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 578999999999999999999999999999999999999999998888776554333
Q ss_pred -----------------------cEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccc
Q 006752 501 -----------------------TNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELS 557 (632)
Q Consensus 501 -----------------------~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~ 557 (632)
..++++.|.+++..|..+..+++|++||+++|++ .+..+..+. ..+. .
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l-~g~ip~~l~-~l~~-------L 658 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML-SGYIPKEIG-SMPY-------L 658 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC-BSCCCGGGG-GCTT-------C
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc-cccCCHHHh-cccc-------C
Confidence 3344555778888888888888888888888887 333332222 2222 3
Q ss_pred cccCCCCCCCCCCCCCcchhhhhh------hcccCCCCCCCccchhcccccCHHHHHHhhcccccccCCCC
Q 006752 558 VICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARPDD 622 (632)
Q Consensus 558 ~~~~~~~n~~~g~ip~~~~~~~~~------~n~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~l~g~ip~~ 622 (632)
+..++++|+++|.||..++.+..+ .|+++|.+|.....+. .++.|||++|+|+|.||+.
T Consensus 659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~------~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT------MLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC------CCSEEECCSSEEEEECCSS
T ss_pred CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC------CCCEEECcCCcccccCCCc
Confidence 566788888888888888887766 7888885554433333 6778899999999999975
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3e-51 Score=452.21 Aligned_cols=488 Identities=17% Similarity=0.180 Sum_probs=337.2
Q ss_pred HHHHHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCC
Q 006752 24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRV 103 (632)
Q Consensus 24 ~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i 103 (632)
...++|....++.+|..++. .+++|+|++| .++...+..|+++++|++|++++|. +
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~----------------------~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i 69 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPN----------------------STECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQ-I 69 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCT----------------------TCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCC-C
T ss_pred CceEECCCCCcccCcCCCCC----------------------cCcEEEccCC-ccCcCChhHhccCccceEEECCCCc-c
Confidence 34667888999999977655 5777777777 3555445667777777777777776 6
Q ss_pred CchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHh
Q 006752 104 TSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS 183 (632)
Q Consensus 104 ~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 183 (632)
....+.+|+++++|++|++++| .++...+..|+++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..
T Consensus 70 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 148 (606)
T 3t6q_A 70 YWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148 (606)
T ss_dssp CEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT
T ss_pred ceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc
Confidence 6666677777777777777777 566666667777777777777777777665666777777777777777776643334
Q ss_pred ccCCCCccEEEecCCCCCchhhHhhcCCCCCc--EEEccCCCCCCCCC----CC--------------------------
Q 006752 184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS--FLNLAWTGVTKLPN----IS-------------------------- 231 (632)
Q Consensus 184 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~~n~l~~l~~----l~-------------------------- 231 (632)
+..+++|++|++++|.+++..+..++.+++|+ .|++++|.+.+++. ..
T Consensus 149 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~ 228 (606)
T 3t6q_A 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228 (606)
T ss_dssp TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEE
T ss_pred ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchh
Confidence 44477777777777777776677777777777 67777766553220 00
Q ss_pred --------------------------CCCEEECCCCcccchhcc-ccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEE
Q 006752 232 --------------------------SLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 284 (632)
Q Consensus 232 --------------------------~L~~L~L~~~~l~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 284 (632)
+|++|++++|.+..++.. +..+++|++|++++|.+..+|.. +..+++|++|
T Consensus 229 ~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~--l~~l~~L~~L 306 (606)
T 3t6q_A 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG--LVGLSTLKKL 306 (606)
T ss_dssp EEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS--CCSCTTCCEE
T ss_pred heechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh--hcccccCCEE
Confidence 455566666666655544 44666777777777766665543 3456667777
Q ss_pred eccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHH-HHhcCCCCcEEEccCCcCcchh--HHHHHhcCCCCcEEEcc
Q 006752 285 DVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEM-VACVGANLRNLNLSNTRFSSAG--VGILAGHLPNLEILSLS 359 (632)
Q Consensus 285 ~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~L~ 359 (632)
++++|.+... ..+..+++|++|++++|.+.+..+.. +..+ ++|++|++++|.+++.. +..+ +.+++|++|+++
T Consensus 307 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~ 384 (606)
T 3t6q_A 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL-ENLRELDLSHDDIETSDCCNLQL-RNLSHLQSLNLS 384 (606)
T ss_dssp ECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC-TTCCEEECCSSCCCEEEESTTTT-TTCTTCCEEECC
T ss_pred ECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc-CcCCEEECCCCccccccCcchhc-ccCCCCCEEECC
Confidence 7777766665 35666667777777766665433322 3333 66777777776666543 3333 456667777777
Q ss_pred CCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccc--cchhhhccccc
Q 006752 360 GTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVL--AGFIQQVGAET 437 (632)
Q Consensus 360 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~~ 437 (632)
+|++++..+..+..+++|++|++++|++.+..+.........+..+.. ........+...+ ...++.|++++
T Consensus 385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL------SHSLLDISSEQLFDGLPALQHLNLQG 458 (606)
T ss_dssp SCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC------TTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred CCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC------CCCccCCcCHHHHhCCCCCCEEECCC
Confidence 776666666666666677777777776666544432111111221111 1112222222222 34688888888
Q ss_pred ccccc-----hHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752 438 DLVLS-----LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 438 ~~l~~-----~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 512 (632)
|.+.. ...+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..+..+++| +|++++|++++
T Consensus 459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence 87743 2468999999999999999999889999999999999999999999999999999999 99999999999
Q ss_pred CCCCCCCCCCCcceEecCCCcccChHHHHHHHHHc
Q 006752 513 SGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH 547 (632)
Q Consensus 513 ~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~ 547 (632)
..|..+..+++|+.|++++|++.|+|...++.++.
T Consensus 538 ~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~ 572 (606)
T 3t6q_A 538 ILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY 572 (606)
T ss_dssp CCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred cCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHH
Confidence 98888888999999999999999998876666555
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.2e-49 Score=437.36 Aligned_cols=482 Identities=16% Similarity=0.116 Sum_probs=332.5
Q ss_pred HHHHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCC
Q 006752 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT 104 (632)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~ 104 (632)
..++|.+..++.+|..++. ++++|+|++| .+.+..+..|+++++|++|++++|. ++
T Consensus 14 ~~~~c~~~~l~~ip~~~~~----------------------~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~ 69 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIPS----------------------STKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCE-IE 69 (606)
T ss_dssp TEEECTTSCCSSCCTTSCT----------------------TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred CceEccCCCcccCCCCCCC----------------------CcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCc-cc
Confidence 4678888999999976543 6888999988 4555555678888899999999887 88
Q ss_pred chhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCCh-HHHHh
Q 006752 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD-LVLRS 183 (632)
Q Consensus 105 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~ 183 (632)
...+.+|.++++|++|++++| .++...+..|+++++|++|++++|.+++..+..+.++++|++|++++|.+.+ .+|..
T Consensus 70 ~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~ 148 (606)
T 3vq2_A 70 TIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148 (606)
T ss_dssp EECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred ccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh
Confidence 777778888899999999888 6777777888888999999999988887666678888899999999888875 45778
Q ss_pred ccCCCCccEEEecCCCCCchhhHhhcCCCCC----cEEEccCCCCCCCC----CCCCCCEEECCCCccc-----------
Q 006752 184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL----SFLNLAWTGVTKLP----NISSLECLNLSNCTID----------- 244 (632)
Q Consensus 184 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~n~l~~l~----~l~~L~~L~L~~~~l~----------- 244 (632)
++++++|++|++++|.+++..+..++.+++| .++++++|.++.++ ...+|++|++++|.+.
T Consensus 149 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l 228 (606)
T 3vq2_A 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228 (606)
T ss_dssp GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTT
T ss_pred HhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccc
Confidence 8888899999999888887766666555444 36777777766533 2235666666655432
Q ss_pred -----------------------------------------------chhccccCCCCCcEEEeeCCCCCchhhhhhhhc
Q 006752 245 -----------------------------------------------SILEGNENKAPLAKISLAGTTFINEREAFLYIE 277 (632)
Q Consensus 245 -----------------------------------------------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 277 (632)
+....+..+++|+.|++++|.+..++ .+..
T Consensus 229 ~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~---~l~~ 305 (606)
T 3vq2_A 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---DVPK 305 (606)
T ss_dssp TTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC---CCCT
T ss_pred cccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh---hccc
Confidence 11111334556666666666665554 3345
Q ss_pred CCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchh--HHHHHhcCCCCcE
Q 006752 278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG--VGILAGHLPNLEI 355 (632)
Q Consensus 278 ~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~ 355 (632)
+++|++|++++|.+..++.+ .+++|++|++++|...+.. .+..+ ++|++|++++|++++.. +..+ ..+++|++
T Consensus 306 ~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l-~~L~~L~ls~n~l~~~~~~~~~~-~~~~~L~~ 380 (606)
T 3vq2_A 306 HFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF--KKVAL-PSLSYLDLSRNALSFSGCCSYSD-LGTNSLRH 380 (606)
T ss_dssp TCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC--CCCCC-TTCCEEECCSSCEEEEEECCHHH-HCCSCCCE
T ss_pred cccCCEEEcccccCcccccC-CCCccceeeccCCcCccch--hhccC-CCCCEEECcCCccCCCcchhhhh-ccCCcccE
Confidence 56666666666666555544 5666666666666433222 12222 55666666666655442 3333 44566666
Q ss_pred EEccCCCCChHHHHHHhcCCCccEEEccCCccccccCC-Cccchhhhhhhhhhhhhceecccccccccccc--ccchhhh
Q 006752 356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPS-GQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSV--LAGFIQQ 432 (632)
Q Consensus 356 L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~ 432 (632)
|++++|.+++. +..+..+++|++|++++|++.+..|. .+.. ...+..+ ..........+... ....++.
T Consensus 381 L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L------~l~~n~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 381 LDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYL------DISYTNTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp EECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTT-CTTCCEE------ECTTSCCEECCTTTTTTCTTCCE
T ss_pred eECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhc-cccCCEE------ECcCCCCCccchhhhcCCCCCCE
Confidence 66666655442 24455556666666666666555442 2211 1111111 11111111111111 1246788
Q ss_pred cccccccccc---hHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCce
Q 006752 433 VGAETDLVLS---LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 509 (632)
Q Consensus 433 l~~~~~~l~~---~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~ 509 (632)
|++++|.+.. ...+..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..|..+++|++|++++|+
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 8888887753 3468889999999999999999888999999999999999999999989999999999999999999
Q ss_pred eccCCCCCCCCCC-CcceEecCCCcccChHHHHHHHHHcC
Q 006752 510 LTNSGLGSFKPPR-SLKLLDLHGGWLLTEDAILQFCKMHP 548 (632)
Q Consensus 510 l~~~~~~~l~~~~-~L~~L~l~~N~l~~~~~~~~~~~~~~ 548 (632)
++.. |..+..++ +|++|++++|++.|+|...++.++..
T Consensus 533 l~~~-p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~ 571 (606)
T 3vq2_A 533 IETS-KGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK 571 (606)
T ss_dssp CCCE-ESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT
T ss_pred Cccc-CHhHhhhcccCcEEEccCCCcccCCccHHHHHHHH
Confidence 9964 66687776 69999999999999998888887764
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-47 Score=422.07 Aligned_cols=468 Identities=18% Similarity=0.144 Sum_probs=334.8
Q ss_pred ccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEE
Q 006752 67 AEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLW 146 (632)
Q Consensus 67 l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~ 146 (632)
-++++.++.. ++ .+|..+ -+++++|++++|. ++...+.+|.++++|++|++++| .+....+..|.++++|++|+
T Consensus 14 ~~~~~c~~~~-l~-~iP~~l--~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ 87 (606)
T 3t6q_A 14 NKTYNCENLG-LN-EIPGTL--PNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLV 87 (606)
T ss_dssp TTEEECTTSC-CS-SCCTTS--CTTCCEEECTTCC-CSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CceEECCCCC-cc-cCcCCC--CCcCcEEEccCCc-cCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeee
Confidence 3466666653 22 122222 2479999999999 88888889999999999999999 78888888999999999999
Q ss_pred ccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCC
Q 006752 147 LSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK 226 (632)
Q Consensus 147 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 226 (632)
+++|.+++..+..|..+++|++|++++|.+++..+..++++++|++|++++|.+++..+..+..+++|++|++++|.++.
T Consensus 88 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 88 LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp CTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred CCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence 99999998888899999999999999999999878889999999999999999988654556669999999999999987
Q ss_pred C-----CCCCCCC--EEECCCCcccchhccccCCCCCcEEEeeCC-----------------------------------
Q 006752 227 L-----PNISSLE--CLNLSNCTIDSILEGNENKAPLAKISLAGT----------------------------------- 264 (632)
Q Consensus 227 l-----~~l~~L~--~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n----------------------------------- 264 (632)
+ ..+++|+ +|++++|.+..+++..+....|++|++++|
T Consensus 168 ~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred cChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhH
Confidence 4 3788888 899999999987776666665555555554
Q ss_pred -----------------CCCchhhhhhhhcCCCccEEeccCCCCCch-hhhhcCCCCCeeeccCCCCCchHHHHHHhcCC
Q 006752 265 -----------------TFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGA 326 (632)
Q Consensus 265 -----------------~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 326 (632)
.+.++++. .+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+..+..+..+ +
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~ 325 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSN-TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF-P 325 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTT-TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC-T
T ss_pred hchhhcCceeEEEeecCccCccCHH-HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhcc-C
Confidence 44333322 233445555555555555544 334445555555555555554444444444 5
Q ss_pred CCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHH--HHHHhcCCCccEEEccCCccccccCCCccchhhhhhh
Q 006752 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA--ISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYC 404 (632)
Q Consensus 327 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 404 (632)
+|++|++++|.+.+..+...++.+++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------- 398 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE------- 398 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT-------
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC-------
Confidence 55555555555443332222244555555555555554433 344455555555555555555444433211
Q ss_pred hhhhhhceeccccccccccccccchhhhcccccccccch---HHhhcCCcccccccCccCCCCCccccccCccccccccc
Q 006752 405 FMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSL---TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 481 (632)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 481 (632)
...++.+++++|.+... ..+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 399 ----------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 399 ----------------------CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp ----------------------CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred ----------------------CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence 24677888888877432 24788999999999999999988888999999999999
Q ss_pred ccccCCCc---chhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeecccc
Q 006752 482 RNASLTDV---SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSV 558 (632)
Q Consensus 482 s~n~l~~~---~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 558 (632)
++|++++. .+..+..+++|++|++++|++++..|..|..+++|++|++++|++ .+..+..+. ..+ ..
T Consensus 457 ~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~l~-~l~-------~L- 526 (606)
T 3t6q_A 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL-TSSSIEALS-HLK-------GI- 526 (606)
T ss_dssp TTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CGGGGGGGT-TCC-------SC-
T ss_pred CCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc-CcCChhHhC-ccc-------cc-
Confidence 99999873 235688999999999999999999899999999999999999997 333332221 121 12
Q ss_pred ccCCCCCCCCCCCCCcchhhhhh
Q 006752 559 ICPSDQIGSNGPSPSRTSLRASL 581 (632)
Q Consensus 559 ~~~~~~n~~~g~ip~~~~~~~~~ 581 (632)
..++++|++++..|..++.+..+
T Consensus 527 ~L~L~~N~l~~~~~~~~~~l~~L 549 (606)
T 3t6q_A 527 YLNLASNHISIILPSLLPILSQQ 549 (606)
T ss_dssp EEECCSSCCCCCCGGGHHHHHTS
T ss_pred EEECcCCcccccCHhhcccCCCC
Confidence 56788999998888887776544
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.4e-48 Score=433.66 Aligned_cols=524 Identities=17% Similarity=0.158 Sum_probs=294.6
Q ss_pred HHHHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCC
Q 006752 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT 104 (632)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~ 104 (632)
+.++|++..++.+|..++. ++++|+|++|. +....+..|+++++|++|++++|. ++
T Consensus 7 ~~~~cs~~~L~~ip~~~~~----------------------~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~ 62 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLPT----------------------NITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNT-IS 62 (680)
T ss_dssp SEEECCSSCCSSCCSCSCT----------------------TCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSC-CC
T ss_pred CeeECCCCCccccccccCC----------------------CCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCc-cC
Confidence 4567888889999976543 45555555552 333333345555555555555554 44
Q ss_pred chhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhc
Q 006752 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSL 184 (632)
Q Consensus 105 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l 184 (632)
...+.+|+++++|++|++++| .++......|+++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+
T Consensus 63 ~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 141 (680)
T 1ziw_A 63 KLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141 (680)
T ss_dssp CCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS
T ss_pred ccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh
Confidence 444445555555555555555 3444333345555555555555555554444445555555555555555554444444
Q ss_pred cCCCCccEEEecCCCCCchhhHhhc--CCCCCcEEEccCCCCCCCC--------------------------------CC
Q 006752 185 QVLTKLEYLDLWGSQVSNRGAAVLK--MFPRLSFLNLAWTGVTKLP--------------------------------NI 230 (632)
Q Consensus 185 ~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~l~--------------------------------~l 230 (632)
+++++|++|++++|.+++..+..+. .+++|++|++++|.+++++ ..
T Consensus 142 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~ 221 (680)
T 1ziw_A 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221 (680)
T ss_dssp SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTT
T ss_pred cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhh
Confidence 5555555555555555544444332 2345555555555444321 01
Q ss_pred CCCCEEECCCCcccchh-ccccCC--CCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCe
Q 006752 231 SSLECLNLSNCTIDSIL-EGNENK--APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEH 305 (632)
Q Consensus 231 ~~L~~L~L~~~~l~~~~-~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~ 305 (632)
++|++|++++|.+.+++ ..+..+ ++|++|++++|.+.++++. .+..+++|++|++++|.+.+. ..+..+++|++
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc-cccCcccccEeeCCCCccCccChhhhcCCCCccE
Confidence 34555555555554322 222222 2355555555555544322 234455555555555555544 34444555555
Q ss_pred eeccCCCCCchHH---------HHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccC----------------
Q 006752 306 LDLSSSMIGDDSV---------EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG---------------- 360 (632)
Q Consensus 306 L~l~~n~l~~~~~---------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~---------------- 360 (632)
|++++|...+... ..+..+ ++|++|++++|.+++..+..+ ..+++|++|++++
T Consensus 301 L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~ 378 (680)
T 1ziw_A 301 LNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFVSL 378 (680)
T ss_dssp EECTTCBCCC------CCEECTTTTTTC-TTCCEEECCSCCBCCCCTTTT-TTCTTCCEEECTTCBSCCCEECTTTTGGG
T ss_pred EeccchhhhcccccccccccChhhcccC-CCCCEEECCCCccCCCChhHh-ccccCCcEEECCCCchhhhhcchhhhccc
Confidence 5554433221110 012222 445555555555544433333 3344555555544
Q ss_pred ------------CCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccc--
Q 006752 361 ------------TQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVL-- 426 (632)
Q Consensus 361 ------------n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 426 (632)
|++++..+.++..+++|+.|++++|.+++.+|. ..+
T Consensus 379 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------------~~~~~ 428 (680)
T 1ziw_A 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG------------------------------QEWRG 428 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS------------------------------GGGTT
T ss_pred ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc------------------------------ccccC
Confidence 444444444444444555555555544443332 111
Q ss_pred cchhhhcccccccccc--hHHhhcCCcccccccCccCCC--CCccccccCcccccccccccccCCCcchhhhccCCCCcE
Q 006752 427 AGFIQQVGAETDLVLS--LTALQNLNHLERLNLEQTQVS--DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 502 (632)
Q Consensus 427 ~~~l~~l~~~~~~l~~--~~~l~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 502 (632)
...++.+++++|.+.. ...+..+++|++|++++|.++ +..|..|..+++|++|++++|++++..+..|..+++|++
T Consensus 429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 508 (680)
T 1ziw_A 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508 (680)
T ss_dssp CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCE
Confidence 2356777787777643 246788899999999999886 557888889999999999999999988888999999999
Q ss_pred EeecCceeccCCC--------CCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCCCc
Q 006752 503 LSIRDAVLTNSGL--------GSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSR 574 (632)
Q Consensus 503 L~ls~N~l~~~~~--------~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip~~ 574 (632)
|++++|++++..+ ..|..+++|++|++++|++.. .+.......+ ..+..++++|++++..|..
T Consensus 509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~-------~L~~L~Ls~N~l~~l~~~~ 579 (680)
T 1ziw_A 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE--IPVEVFKDLF-------ELKIIDLGLNNLNTLPASV 579 (680)
T ss_dssp EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC--CCTTTTTTCT-------TCCEEECCSSCCCCCCTTT
T ss_pred EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC--CCHHHccccc-------CcceeECCCCCCCcCCHhH
Confidence 9999999987532 236788999999999998742 1111111222 2456678899999776666
Q ss_pred chhhhhh------hcccCCCCCCCccchhcccccCHHHHHHhhcccccccCC
Q 006752 575 TSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARP 620 (632)
Q Consensus 575 ~~~~~~~------~n~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~l~g~ip 620 (632)
+..+..+ .|++++ ..+..+-. .++.++.++|++|.+.+.-+
T Consensus 580 ~~~l~~L~~L~L~~N~l~~--~~~~~~~~---~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 580 FNNQVSLKSLNLQKNLITS--VEKKVFGP---AFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTTCTTCCEEECTTSCCCB--CCHHHHHH---HHTTCSEEECTTCCCCBCCC
T ss_pred hCCCCCCCEEECCCCcCCc--cChhHhcc---cccccCEEEccCCCcccCCc
Confidence 6665544 666666 22221110 12356678999999999655
No 7
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-47 Score=420.61 Aligned_cols=457 Identities=18% Similarity=0.180 Sum_probs=351.9
Q ss_pred HHHHHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCC
Q 006752 24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRV 103 (632)
Q Consensus 24 ~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i 103 (632)
...++|....+..+|..++. ++++|++++|. ++...+..|.++++|++|++++|. +
T Consensus 9 ~~~~~c~~~~l~~ip~~l~~----------------------~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i 64 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLPF----------------------STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-I 64 (570)
T ss_dssp TTEEECCSSCCSSCCSSSCS----------------------SCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCC-C
T ss_pred CcEEEeCCCCccccCCCccc----------------------cccEEEccCCc-cCccChhHhhCCCCceEEECCCCc-C
Confidence 34567788888888875443 69999999994 555555678899999999999998 8
Q ss_pred CchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCCh-HHHH
Q 006752 104 TSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD-LVLR 182 (632)
Q Consensus 104 ~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~ 182 (632)
+...+.+|+++++|++|++++| .++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+|.
T Consensus 65 ~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~ 143 (570)
T 2z63_A 65 QTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred CccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChh
Confidence 8877888999999999999999 6887777888999999999999999887655568899999999999999887 3578
Q ss_pred hccCCCCccEEEecCCCCCchhhHhhcCCCCC----cEEEccCCCCCCCC----CCCCCCEEECCCCc------------
Q 006752 183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL----SFLNLAWTGVTKLP----NISSLECLNLSNCT------------ 242 (632)
Q Consensus 183 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~n~l~~l~----~l~~L~~L~L~~~~------------ 242 (632)
.++++++|++|++++|.+++..+..+..+++| +.+++++|.+..++ ...+|++|++++|.
T Consensus 144 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 223 (570)
T 2z63_A 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223 (570)
T ss_dssp GGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHT
T ss_pred hhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcC
Confidence 89999999999999999988877778777777 88999988877543 12256666665541
Q ss_pred ----------------------------------------------cc-chhccccCCCCCcEEEeeCCCCCchhhhhhh
Q 006752 243 ----------------------------------------------ID-SILEGNENKAPLAKISLAGTTFINEREAFLY 275 (632)
Q Consensus 243 ----------------------------------------------l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 275 (632)
+. ..+..+..+++|++|++++|.+..++..+
T Consensus 224 l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~-- 301 (570)
T 2z63_A 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS-- 301 (570)
T ss_dssp TTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCC--
T ss_pred ccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhh--
Confidence 11 12333446678888888888777665542
Q ss_pred hcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchh--HHHHHhcCCCC
Q 006752 276 IETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG--VGILAGHLPNL 353 (632)
Q Consensus 276 ~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L 353 (632)
..+ +|++|++++|.+..++. ..+++|++|++++|.+.+..+. .. +++|++|++++|++++.. +..+ ..+++|
T Consensus 302 ~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~~~--~~-~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L 375 (570)
T 2z63_A 302 YNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFSE--VD-LPSLEFLDLSRNGLSFKGCCSQSD-FGTTSL 375 (570)
T ss_dssp SCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBCCC--CB-CTTCCEEECCSSCCBEEEEEEHHH-HTCSCC
T ss_pred ccC-CccEEeeccCcccccCc-ccccccCEEeCcCCcccccccc--cc-CCCCCEEeCcCCccCccccccccc-cccCcc
Confidence 344 78888888888776544 4677888888888776654433 22 377888888888777653 3333 567888
Q ss_pred cEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCC-ccchhhhhhhhhhhhhceeccccccccccccccchhhh
Q 006752 354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSG-QMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQ 432 (632)
Q Consensus 354 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (632)
++|++++|.+++..+. +..+++|++|++++|.+.+..|.. +.. ...++.
T Consensus 376 ~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~-----------------------------l~~L~~ 425 (570)
T 2z63_A 376 KYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS-----------------------------LRNLIY 425 (570)
T ss_dssp CEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT-----------------------------CTTCCE
T ss_pred CEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc-----------------------------CCCCCE
Confidence 8888888877765444 677788888888888877665431 111 134556
Q ss_pred cccccccccc--hHHhhcCCcccccccCccCCC-CCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCce
Q 006752 433 VGAETDLVLS--LTALQNLNHLERLNLEQTQVS-DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 509 (632)
Q Consensus 433 l~~~~~~l~~--~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~ 509 (632)
+++++|.+.. ...+.++++|++|++++|.++ +.+|..+..+++|++|++++|++++..|.+|..+++|++|++++|+
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 6666665532 246788999999999999998 5688899999999999999999999889999999999999999999
Q ss_pred eccCCCCCCCCCCCcceEecCCCcccChHHHHHH
Q 006752 510 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF 543 (632)
Q Consensus 510 l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~ 543 (632)
+++..+..|..+++|+.|++++|++.|.+...++
T Consensus 506 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 506 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred CCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 9999888899999999999999999887754333
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-45 Score=409.27 Aligned_cols=493 Identities=17% Similarity=0.159 Sum_probs=312.7
Q ss_pred cCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCcc
Q 006752 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (632)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 143 (632)
+++|++|+|++|. +.+..+..|+++++|++|++++|. ++..+..+|+++++|++|++++| .++...+..|+++++|+
T Consensus 48 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 48 YSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCC
T ss_pred CCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCC
Confidence 4567777777663 444445556666777777777666 65555555666777777777766 45555455566666677
Q ss_pred EEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhcc--CCCCccEEEecCCCCCchhhHhhcCC----------
Q 006752 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMF---------- 211 (632)
Q Consensus 144 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l---------- 211 (632)
+|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence 777776666665555566666666666666666655554443 34566666666666555444433322
Q ss_pred -----------------CC--------------------------CcEEEccCCCCCC-----CCCCCCCCEEECCCCcc
Q 006752 212 -----------------PR--------------------------LSFLNLAWTGVTK-----LPNISSLECLNLSNCTI 243 (632)
Q Consensus 212 -----------------~~--------------------------L~~L~l~~n~l~~-----l~~l~~L~~L~L~~~~l 243 (632)
++ |++|++++|.++. +..+++|++|++++|.+
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence 23 4555555444432 22345555555555555
Q ss_pred cch-hccccCCCCCcEEEeeCCCCCc------hh--hhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCC
Q 006752 244 DSI-LEGNENKAPLAKISLAGTTFIN------ER--EAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM 312 (632)
Q Consensus 244 ~~~-~~~~~~~~~L~~L~l~~n~~~~------~~--~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~ 312 (632)
.++ +..+..+++|++|++++|...+ ++ ....+..+++|++|++++|.+.+. ..+..+++|++|++++|.
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 432 2233445555555554443221 11 112455788999999999999887 558889999999999887
Q ss_pred CCc--hHHHHHHhc-CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHH-HHHhcCCCccEEEccCCccc
Q 006752 313 IGD--DSVEMVACV-GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIK 388 (632)
Q Consensus 313 l~~--~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~Ls~n~i~ 388 (632)
+.. .....+... .++|++|++++|++++..+..+ ..+++|++|++++|++++..+ ..+..+++|++|++++|++.
T Consensus 365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 443 (680)
T 1ziw_A 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF-SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443 (680)
T ss_dssp SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh-hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence 432 111222221 1579999999999888777665 678899999999998876544 56888899999999999988
Q ss_pred cccCCCccchhhhhhhhhhhhhceecccccccccccc-ccchhhhcccccccccch--HHhhcCCcccccccCccCCCCC
Q 006752 389 GMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSV-LAGFIQQVGAETDLVLSL--TALQNLNHLERLNLEQTQVSDA 465 (632)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~l~~~--~~l~~l~~L~~L~Ls~n~l~~~ 465 (632)
+..+..+..+ ..+..+....+... ....+|..+ -...++.+++++|.+..+ ..+.++++|++|++++|.+++.
T Consensus 444 ~~~~~~~~~~-~~L~~L~l~~n~l~---~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 444 QLTRNSFALV-PSLQRLMLRRVALK---NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp ECCTTTTTTC-TTCCEEECTTSCCB---CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred eeChhhhhcC-cccccchhcccccc---ccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence 7766554322 11111111111110 001223222 134678888888887544 3478888999999999988864
Q ss_pred cc--------ccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccCh
Q 006752 466 TL--------FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE 537 (632)
Q Consensus 466 ~~--------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~ 537 (632)
.+ ..|..+++|++|+|++|+++.+.+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++ ++
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~ 598 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI-TS 598 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC-CB
T ss_pred chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC-Cc
Confidence 22 2367788999999999999887667788899999999999999988777788888999999999987 33
Q ss_pred HHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCC
Q 006752 538 DAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSP 572 (632)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip 572 (632)
..+..+....+. ....++++|.+....+
T Consensus 599 ~~~~~~~~~~~~-------L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 599 VEKKVFGPAFRN-------LTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCHHHHHHHHTT-------CSEEECTTCCCCBCCC
T ss_pred cChhHhcccccc-------cCEEEccCCCcccCCc
Confidence 333333323332 2345566777666554
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-44 Score=395.12 Aligned_cols=452 Identities=18% Similarity=0.194 Sum_probs=330.1
Q ss_pred HHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCch
Q 006752 27 WRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSS 106 (632)
Q Consensus 27 ~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~ 106 (632)
++|+...++.+|..++ +++++|++++|. +++..+..|+++++|++|++++|. ++..
T Consensus 10 c~~~~~~l~~ip~~~~----------------------~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~ 65 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT----------------------AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTI 65 (549)
T ss_dssp EECTTSCCSSCCSCCC----------------------TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEE
T ss_pred EECCCCccccccccCC----------------------CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCcc
Confidence 4556677888886533 368888888884 555555677888888888888887 7777
Q ss_pred hHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHh-HHHHhcCCCCCCEEEcCCCC-CChHHHHhc
Q 006752 107 ALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLP-VTDLVLRSL 184 (632)
Q Consensus 107 ~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l 184 (632)
.+.+|.++++|++|++++| .++...+..++++++|++|++++|.+++. .+..+..+++|++|++++|. +....+..+
T Consensus 66 ~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 144 (549)
T 2z81_A 66 EGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144 (549)
T ss_dssp CTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred ChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh
Confidence 7778888888888888888 67777777788888888888888888753 34567788888888888887 444334577
Q ss_pred cCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC-----CCCCCCEEECCCCcccchh---cc-ccCCCC
Q 006752 185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSIL---EG-NENKAP 255 (632)
Q Consensus 185 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~l~~L~~L~L~~~~l~~~~---~~-~~~~~~ 255 (632)
.++++|++|++++|.+++..|..+..+++|++|++++|.+..++ .+++|++|++++|.+.+++ .. ...+++
T Consensus 145 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 224 (549)
T 2z81_A 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224 (549)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred hcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhc
Confidence 88888888888888888877778887778888887777766533 4677777777777776542 11 124566
Q ss_pred CcEEEeeCCCCCchhhhh---hhhcCCCccEEeccCCCCCc------------------------------hh-------
Q 006752 256 LAKISLAGTTFINEREAF---LYIETSLLSFLDVSNSSLSR------------------------------FC------- 295 (632)
Q Consensus 256 L~~L~l~~n~~~~~~~~~---~~~~~~~L~~L~ls~n~l~~------------------------------~~------- 295 (632)
|+.|++++|.+.+..... ....+++|+.+++++|.+.+ ..
T Consensus 225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~ 304 (549)
T 2z81_A 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304 (549)
T ss_dssp CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH
T ss_pred ccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh
Confidence 777777776665422111 12234455555555554332 21
Q ss_pred hhhcCCCCCeeeccCCCCCchHHHHH-HhcCCCCcEEEccCCcCcchhHHHH--HhcCCCCcEEEccCCCCChHHH--HH
Q 006752 296 FLTQMKALEHLDLSSSMIGDDSVEMV-ACVGANLRNLNLSNTRFSSAGVGIL--AGHLPNLEILSLSGTQIDDYAI--SY 370 (632)
Q Consensus 296 ~l~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~--~~ 370 (632)
.+...++|+.|++++|.+.. .|..+ ..+ ++|++|++++|++++..+... .+.+++|++|++++|++++..+ ..
T Consensus 305 ~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 382 (549)
T 2z81_A 305 VYSLLEKVKRITVENSKVFL-VPCSFSQHL-KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382 (549)
T ss_dssp HHHHSTTCCEEEEESSCCCC-CCHHHHHHC-TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH
T ss_pred hhhhcccceEEEeccCcccc-CCHHHHhcC-ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhh
Confidence 12334678888888888874 44444 445 889999999998888665431 3567889999999998887643 56
Q ss_pred HhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCC
Q 006752 371 MSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLN 450 (632)
Q Consensus 371 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~ 450 (632)
+..+++|++|++++|++++ +|..+.. ...++.|++++|.+..++.. -.+
T Consensus 383 ~~~l~~L~~L~Ls~N~l~~-lp~~~~~-----------------------------~~~L~~L~Ls~N~l~~l~~~-~~~ 431 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFHP-MPDSCQW-----------------------------PEKMRFLNLSSTGIRVVKTC-IPQ 431 (549)
T ss_dssp GGGCTTCCEEECTTCCCCC-CCSCCCC-----------------------------CTTCCEEECTTSCCSCCCTT-SCT
T ss_pred hhcCCCCCEEECCCCCCcc-CChhhcc-----------------------------cccccEEECCCCCcccccch-hcC
Confidence 7888899999999998885 4553321 24577788888887533221 126
Q ss_pred cccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecC
Q 006752 451 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 530 (632)
Q Consensus 451 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~ 530 (632)
+|++|++++|++++.. ..+++|++|+|++|+++. +|. ...+++|++|++++|++++..|..|..+++|+.|+++
T Consensus 432 ~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 432 TLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT-LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505 (549)
T ss_dssp TCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS-CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred CceEEECCCCChhhhc----ccCChhcEEECCCCccCc-CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEec
Confidence 8999999999999843 478999999999999996 454 4679999999999999999988889999999999999
Q ss_pred CCcccChHHHHH
Q 006752 531 GGWLLTEDAILQ 542 (632)
Q Consensus 531 ~N~l~~~~~~~~ 542 (632)
+|++.|+|....
T Consensus 506 ~N~~~~~~~~~~ 517 (549)
T 2z81_A 506 TNPWDCSCPRID 517 (549)
T ss_dssp SSCBCCCHHHHH
T ss_pred CCCccCCCccHH
Confidence 999999887433
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-45 Score=419.31 Aligned_cols=482 Identities=18% Similarity=0.197 Sum_probs=289.3
Q ss_pred HHHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCc
Q 006752 26 KWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTS 105 (632)
Q Consensus 26 ~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~ 105 (632)
.++|+...++.+|. ++. ++++|||++| .++...+..|+++++|++|+|++|..+..
T Consensus 8 ~~dcs~~~L~~vP~-lp~----------------------~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~ 63 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-VLN----------------------TTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLT 63 (844)
T ss_dssp EEEESCCCSSCCCS-SCT----------------------TCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCE
T ss_pred EEEccCCCCCCCCC-CCC----------------------CcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccc
Confidence 45677888999986 443 6888888888 46555566778888888888888864555
Q ss_pred hhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHH--hcCCCCCCEEEcCCCCCChHHH-H
Q 006752 106 SALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIAL--LSSLQNLSVLDLGGLPVTDLVL-R 182 (632)
Q Consensus 106 ~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~-~ 182 (632)
..+.+|.++++|++|+|++| .+....+..|.++++|++|+|++|.+++..+.. |..+++|++|++++|.+.+..+ .
T Consensus 64 i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~ 142 (844)
T 3j0a_A 64 IDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142 (844)
T ss_dssp ECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG
T ss_pred cCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch
Confidence 55677888888888888888 677777778888888888888888887644443 7788888888888888876543 4
Q ss_pred hccCCCCccEEEecCCCCCchhhHhhcCC--CCCcEEEccCCCCCC-----CCCCC------CCCEEECCCCccc-chhc
Q 006752 183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMF--PRLSFLNLAWTGVTK-----LPNIS------SLECLNLSNCTID-SILE 248 (632)
Q Consensus 183 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~-----l~~l~------~L~~L~L~~~~l~-~~~~ 248 (632)
.|+++++|++|++++|.+++..+..+..+ ++|+.|++++|.+.. +..++ .|++|++++|.+. ..+.
T Consensus 143 ~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 222 (844)
T 3j0a_A 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222 (844)
T ss_dssp GGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred hHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH
Confidence 67888888888888888877666655544 555555555554433 11111 1455555554332 1111
Q ss_pred ccc--------------------------------------CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCC
Q 006752 249 GNE--------------------------------------NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 290 (632)
Q Consensus 249 ~~~--------------------------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~ 290 (632)
.+. ..++|+.|++++|.+.+.++. .+..+++|+.|++++|.
T Consensus 223 ~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~ 301 (844)
T 3j0a_A 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYNK 301 (844)
T ss_dssp GGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC-CSSSCCCCCEEEEESCC
T ss_pred HHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh-hhhcCCCCCEEECCCCc
Confidence 100 013344444444444333221 22334444444444444
Q ss_pred CCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHH
Q 006752 291 LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 368 (632)
Q Consensus 291 l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 368 (632)
+... ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|++.+..+..+ ..+++|++|++++|.+++
T Consensus 302 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~--- 376 (844)
T 3j0a_A 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL-PKVAYIDLQKNHIAIIQDQTF-KFLEKLQTLDLRDNALTT--- 376 (844)
T ss_dssp CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC-TTCCEEECCSCCCCCCCSSCS-CSCCCCCEEEEETCCSCC---
T ss_pred CCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC-CCCCEEECCCCCCCccChhhh-cCCCCCCEEECCCCCCCc---
Confidence 4433 233344444444444444443333333333 444444444444433322222 234444444444444332
Q ss_pred HHHhcCCCccEEEccCCccccccCCCccch---------------hhhhhhhhhhhhceeccccccccccc---cccchh
Q 006752 369 SYMSMMPSLKFIDISNTDIKGMYPSGQMNV---------------FFSAYCFMIVYNLFLHAYGYVIFPSS---VLAGFI 430 (632)
Q Consensus 369 ~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l 430 (632)
+..+++|+.|++++|+++.. |...... ......+.....+....+....++.. .....+
T Consensus 377 --i~~~~~L~~L~l~~N~l~~l-~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L 453 (844)
T 3j0a_A 377 --IHFIPSIPDIFLSGNKLVTL-PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453 (844)
T ss_dssp --CSSCCSCSEEEEESCCCCCC-CCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC
T ss_pred --ccCCCCcchhccCCCCcccc-cccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc
Confidence 11133333333333333221 1100000 00000111111222222222111111 113567
Q ss_pred hhcccccccccch-------HHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEE
Q 006752 431 QQVGAETDLVLSL-------TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 503 (632)
Q Consensus 431 ~~l~~~~~~l~~~-------~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 503 (632)
+.|++++|.+... ..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+. ++|+.|
T Consensus 454 ~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L 531 (844)
T 3j0a_A 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL 531 (844)
T ss_dssp CBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEE
T ss_pred ccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEE
Confidence 8888888877421 3578899999999999999999999999999999999999999998777776 899999
Q ss_pred eecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHH
Q 006752 504 SIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKM 546 (632)
Q Consensus 504 ~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~ 546 (632)
++++|++++..|..| .+|+.+++++|++.|+|...++..+
T Consensus 532 ~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~~ 571 (844)
T 3j0a_A 532 DISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINW 571 (844)
T ss_dssp EEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCSHHHH
T ss_pred ECCCCcCCCCChhHh---CCcCEEEecCCCcccccccHHHHHH
Confidence 999999999988876 4789999999999999876555554
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.6e-44 Score=395.65 Aligned_cols=425 Identities=16% Similarity=0.144 Sum_probs=314.5
Q ss_pred ccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEE
Q 006752 67 AEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLW 146 (632)
Q Consensus 67 l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~ 146 (632)
-++++.++++ ++. +|..+ .++|++|++++|. ++...+..|+++++|++|++++| .++...+..|.++++|++|+
T Consensus 13 ~~~~~c~~~~-l~~-ip~~~--~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~ 86 (606)
T 3vq2_A 13 NITYQCMDQK-LSK-VPDDI--PSSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLI 86 (606)
T ss_dssp TTEEECTTSC-CSS-CCTTS--CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCceEccCCC-ccc-CCCCC--CCCcCEEECCCCC-cCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeE
Confidence 4578888774 322 12222 2789999999998 88888889999999999999999 78888788899999999999
Q ss_pred ccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCc-hhhHhhcCCCCCcEEEccCCCCC
Q 006752 147 LSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVT 225 (632)
Q Consensus 147 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~ 225 (632)
+++|.+++..|..|.++++|++|++++|.+.+..+..++++++|++|++++|.+++ ..|..++++++|++|++++|.++
T Consensus 87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 99999998888899999999999999999988777789999999999999999986 56889999999999999999988
Q ss_pred CCC-----CCCC----CCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhh----------------------
Q 006752 226 KLP-----NISS----LECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFL---------------------- 274 (632)
Q Consensus 226 ~l~-----~l~~----L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---------------------- 274 (632)
+++ .+++ +.+|++++|.++.++...+...+|++|++++|.+.+......
T Consensus 167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 754 2222 558999999999999888877799999999997752111111
Q ss_pred ----------------------------------hhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHH
Q 006752 275 ----------------------------------YIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEM 320 (632)
Q Consensus 275 ----------------------------------~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 320 (632)
+..+++|+.|++++|.+..++.+..+++|++|++++|.+. ..| .
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp-~ 324 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFP-T 324 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCC-C
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccc-c
Confidence 3345677778888887777777777788888888888874 444 2
Q ss_pred HHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHH--HHHHhcCCCccEEEccCCccccccCCCccch
Q 006752 321 VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA--ISYMSMMPSLKFIDISNTDIKGMYPSGQMNV 398 (632)
Q Consensus 321 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 398 (632)
+ .+ ++|++|++++|+..+.. . .+.+++|++|++++|.+++.. +..+..+++|++|++++|.+.+. |..+..
T Consensus 325 ~-~l-~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~- 397 (606)
T 3vq2_A 325 L-DL-PFLKSLTLTMNKGSISF--K-KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMG- 397 (606)
T ss_dssp C-CC-SSCCEEEEESCSSCEEC--C-CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTT-
T ss_pred C-CC-CccceeeccCCcCccch--h-hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccC-
Confidence 3 44 78888888888554433 2 256788888888888877653 66778888888888888887764 443322
Q ss_pred hhhhhhhhhhhhceeccccccccccccccchhhhcccccccccch---HHhhcCCcccccccCccCCCCCccccccCccc
Q 006752 399 FFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSL---TALQNLNHLERLNLEQTQVSDATLFPLSTFKE 475 (632)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 475 (632)
...++.+++++|.+... ..+.++++|++|++++|.+++..|..+..+++
T Consensus 398 ----------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 398 ----------------------------LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp ----------------------------CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred ----------------------------CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence 13445555555555322 24556666666666666666656666666666
Q ss_pred ccccccccccCCC-cchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752 476 LIHLSLRNASLTD-VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 534 (632)
Q Consensus 476 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l 534 (632)
|++|++++|++++ ..|..+..+++|++|++++|++++..|..|..+++|++|++++|++
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 6666666666665 3455566666666666666666666666666666666666666665
No 12
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.4e-43 Score=393.49 Aligned_cols=461 Identities=16% Similarity=0.177 Sum_probs=363.8
Q ss_pred HHHHHhhhcccCCcHHHHHHHHHHHHhccccchhhHHhhcCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCC
Q 006752 25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT 104 (632)
Q Consensus 25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~ 104 (632)
..++|++..++.+|..+|. ++++|||++| .++...+..|+++++|++|+|++|+ ++
T Consensus 34 ~~~~c~~~~l~~vP~~lp~----------------------~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~ 89 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLPF----------------------STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQ 89 (635)
T ss_dssp TEEECTTSCCSSCCSSSCT----------------------TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred CEEECCCCCcCccCCCCCc----------------------CCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CC
Confidence 3567889999999987654 7999999999 4666666789999999999999998 98
Q ss_pred chhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChH-HHHh
Q 006752 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRS 183 (632)
Q Consensus 105 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~ 183 (632)
...+.+|.++++|++|+|++| .++...+..|.++++|++|++++|++++..+..|+++++|++|++++|.+... .|..
T Consensus 90 ~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~ 168 (635)
T 4g8a_A 90 TIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 168 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred CcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh
Confidence 888889999999999999999 78888888899999999999999999987777899999999999999998763 5677
Q ss_pred ccCCCCccEEEecCCCCCchhhHhhcCCCCC----cEEEccCCCCCCCC-----------------------------C-
Q 006752 184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL----SFLNLAWTGVTKLP-----------------------------N- 229 (632)
Q Consensus 184 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~n~l~~l~-----------------------------~- 229 (632)
++.+++|++|++++|++++..+..+..+.++ ..++++.|.+..++ .
T Consensus 169 ~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l 248 (635)
T 4g8a_A 169 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 248 (635)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTT
T ss_pred hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCC
Confidence 8899999999999999988777666544332 34555555443211 0
Q ss_pred --------------------------------------------------------CCCCCEEECCCCcccchhccccCC
Q 006752 230 --------------------------------------------------------ISSLECLNLSNCTIDSILEGNENK 253 (632)
Q Consensus 230 --------------------------------------------------------l~~L~~L~L~~~~l~~~~~~~~~~ 253 (632)
..+++.+.+.++.+..++ .+...
T Consensus 249 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~ 327 (635)
T 4g8a_A 249 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYN 327 (635)
T ss_dssp TTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSC
T ss_pred cccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-ccccc
Confidence 112233333333333222 23355
Q ss_pred CCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCc--hHHHHHHhcCCCCcEE
Q 006752 254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGD--DSVEMVACVGANLRNL 331 (632)
Q Consensus 254 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L 331 (632)
..++.|++.+|.+..++.. .+..|+.+++..+..........+++|+.++++.|.+.. ..+...... .+|+.+
T Consensus 328 ~~L~~L~l~~~~~~~~~~~----~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L 402 (635)
T 4g8a_A 328 FGWQHLELVNCKFGQFPTL----KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-ISLKYL 402 (635)
T ss_dssp CCCSEEEEESCEESSCCCC----BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSC-SCCCEE
T ss_pred hhhhhhhcccccccCcCcc----cchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhh-hhhhhh
Confidence 6788999999887765432 568899999999988777666788999999999998764 334455555 789999
Q ss_pred EccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHH-HHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhh
Q 006752 332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA-ISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYN 410 (632)
Q Consensus 332 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~ 410 (632)
++..+........ + ..+++|+.++++++...... ...+..+++++.++++.|.+.+..+..+..
T Consensus 403 ~~~~~~~~~~~~~-~-~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~------------- 467 (635)
T 4g8a_A 403 DLSFNGVITMSSN-F-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------- 467 (635)
T ss_dssp ECCSCSEEEECSC-C-TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-------------
T ss_pred hcccccccccccc-c-cccccccchhhhhcccccccccccccccccccccccccccccccccccccc-------------
Confidence 9999876654332 2 46889999999887654433 345678889999999999988876654322
Q ss_pred ceeccccccccccccccchhhhccccccccc---chHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCC
Q 006752 411 LFLHAYGYVIFPSSVLAGFIQQVGAETDLVL---SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 487 (632)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 487 (632)
...++.+++++|.+. ....|..+++|++|+|++|++++..|..|.++++|++|+|++|+|+
T Consensus 468 ----------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 468 ----------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp ----------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ----------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence 134556666666432 1146888999999999999999999999999999999999999999
Q ss_pred CcchhhhccCCCCcEEeecCceeccCCCCCCCCC-CCcceEecCCCcccChHHHHHHHHHc
Q 006752 488 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLTEDAILQFCKMH 547 (632)
Q Consensus 488 ~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~-~~L~~L~l~~N~l~~~~~~~~~~~~~ 547 (632)
+..|..|..+++|++|++++|++++..|..|..+ ++|++|++++|++.|+|...+|.+|.
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 592 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence 9999999999999999999999999999999987 68999999999999999888887765
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.5e-43 Score=380.37 Aligned_cols=419 Identities=18% Similarity=0.182 Sum_probs=290.1
Q ss_pred CcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccE
Q 006752 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144 (632)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~ 144 (632)
+++++|++++|. +.+..+..|+++++|++|++++|. ++...+.+|+++++|++|++++| .++.... . .+++|++
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~-~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN-KLVKISC-H--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSS-CCCEEEC-C--CCCCCSE
T ss_pred ccccEEECCCCc-ccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCC-ceeecCc-c--ccCCccE
Confidence 479999999994 666666789999999999999998 88888889999999999999999 6764322 2 7899999
Q ss_pred EEccCCCCCH-hHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCc--cEEEecCCCC--CchhhHhhcCCC-CCcEEE
Q 006752 145 LWLSETGLTA-DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKL--EYLDLWGSQV--SNRGAAVLKMFP-RLSFLN 218 (632)
Q Consensus 145 L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~ 218 (632)
|++++|.+++ ..|..|..+++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+. +...++
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 9999999987 356789999999999999999987 356677777 9999999998 677777666654 233455
Q ss_pred ccCCCCCC------CCCCCCCCEEECCCCc-------ccchhccccCCCCCcEEEeeCCCCCchhhh--hhhhcCCCccE
Q 006752 219 LAWTGVTK------LPNISSLECLNLSNCT-------IDSILEGNENKAPLAKISLAGTTFINEREA--FLYIETSLLSF 283 (632)
Q Consensus 219 l~~n~l~~------l~~l~~L~~L~L~~~~-------l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~ 283 (632)
+++|.+.+ +..+++|+.|++++|. +.+..+.+..+++|+.|++++|.+.+.... ......++|++
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 56665442 3356677777777765 443333556666777777766665542111 11112346666
Q ss_pred EeccCCCCCch--hhh-----hcCCCCCeeeccCCCCCchHHHHHHh------------------------cCCCCcEEE
Q 006752 284 LDVSNSSLSRF--CFL-----TQMKALEHLDLSSSMIGDDSVEMVAC------------------------VGANLRNLN 332 (632)
Q Consensus 284 L~ls~n~l~~~--~~l-----~~~~~L~~L~l~~n~l~~~~~~~~~~------------------------~~~~L~~L~ 332 (632)
|++++|.+++. ..+ ..+++|+.+++++|.+ ......+.. .+++|++|+
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 330 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence 66666665532 222 4555555555555555 111011111 114555555
Q ss_pred ccCCcCcchhHHHHHhcCCCCcEEEccCCCCCh--HHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhh
Q 006752 333 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD--YAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYN 410 (632)
Q Consensus 333 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~ 410 (632)
+++|++++..+..+ +.+++|++|++++|++++ ..|..++.+++|++|++++|.+++.+|..
T Consensus 331 Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~---------------- 393 (520)
T 2z7x_B 331 FSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG---------------- 393 (520)
T ss_dssp CCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC----------------
T ss_pred eECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc----------------
Confidence 55555554444333 345555555555555554 33344555555555555555555433331
Q ss_pred ceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcc
Q 006752 411 LFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS 490 (632)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 490 (632)
.+..+++|++|++++|.+++..|..+. ++|++|++++|+++. +
T Consensus 394 ----------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-i 436 (520)
T 2z7x_B 394 ----------------------------------DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-I 436 (520)
T ss_dssp ----------------------------------SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-C
T ss_pred ----------------------------------hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-c
Confidence 367789999999999999988877664 799999999999996 6
Q ss_pred hhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHH-HHHc
Q 006752 491 LHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF-CKMH 547 (632)
Q Consensus 491 ~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~-~~~~ 547 (632)
|..+..+++|++|++++|++++..+..|..+++|++|++++|++.|+|...++ ..+.
T Consensus 437 p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~ 494 (520)
T 2z7x_B 437 PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 494 (520)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHH
Confidence 67777999999999999999976445588999999999999999999988777 4443
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.2e-43 Score=386.99 Aligned_cols=411 Identities=13% Similarity=0.170 Sum_probs=316.8
Q ss_pred CcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCC------CC--------------------------chhHHhhh
Q 006752 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRR------VT--------------------------SSALWALT 112 (632)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~------i~--------------------------~~~~~~l~ 112 (632)
.+++.|+|+++ .+.+.++..++++++|++|+|++|.. +. ...+..+.
T Consensus 81 ~~V~~L~L~~~-~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTS-CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCc-ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 47999999999 46777888999999999999999852 01 00000000
Q ss_pred -------------------CCCCcCEEeccC-CCCCChhhHhhhcCCCCccEEEccCCCCCHh-----------------
Q 006752 113 -------------------GMTCLKELDLSR-CVKVTDAGMKHLLSISTLEKLWLSETGLTAD----------------- 155 (632)
Q Consensus 113 -------------------~l~~L~~L~L~~-~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~----------------- 155 (632)
....++.+.+.. +..+++ .+..++++++|++|+|++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 011122222222 114555 566788888888999988888875
Q ss_pred HHHHhc--CCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCC-CCc-hhhHhhcCC------CCCcEEEccCCCCC
Q 006752 156 GIALLS--SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-VSN-RGAAVLKMF------PRLSFLNLAWTGVT 225 (632)
Q Consensus 156 ~~~~~~--~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~l~ 225 (632)
+|..+. ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 677777 88889999998888888888888888889999998887 887 788777765 88899999888887
Q ss_pred CCC------CCCCCCEEECCCCccc-chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCC-ccEEeccCCCCCch-hh
Q 006752 226 KLP------NISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSL-LSFLDVSNSSLSRF-CF 296 (632)
Q Consensus 226 ~l~------~l~~L~~L~L~~~~l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~ls~n~l~~~-~~ 296 (632)
.++ .+++|++|++++|.+. .+| .+..+++|++|++++|.+..+|.. +..+++ |++|++++|.++.+ ..
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~--l~~l~~~L~~L~Ls~N~l~~lp~~ 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPAN--FCGFTEQVENLSFAHNKLKYIPNI 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTT--SEEECTTCCEEECCSSCCSSCCSC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHh--hhhhcccCcEEEccCCcCcccchh
Confidence 655 4678889999998888 777 777888899999999888866654 457788 99999999988866 33
Q ss_pred hhcC--CCCCeeeccCCCCCchHHHHHH-------hcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHH
Q 006752 297 LTQM--KALEHLDLSSSMIGDDSVEMVA-------CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 367 (632)
Q Consensus 297 l~~~--~~L~~L~l~~n~l~~~~~~~~~-------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 367 (632)
+... ++|++|++++|.+++..|..+. .. ++|++|++++|+++..... ++..+++|++|++++|+++...
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~~-~~~~l~~L~~L~Ls~N~l~~i~ 473 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKE-LFSTGSPLSSINLMGNMLTEIP 473 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC-CCEEEEECCSSCCCSCCTH-HHHTTCCCSEEECCSSCCSBCC
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccC-CCCCEEECcCCccCcCCHH-HHccCCCCCEEECCCCCCCCcC
Confidence 3433 4799999999999887776665 33 6899999999999855444 3466899999999999998443
Q ss_pred HHHHhcCC-------CccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccc
Q 006752 368 ISYMSMMP-------SLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLV 440 (632)
Q Consensus 368 ~~~l~~~~-------~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l 440 (632)
+..+.... +|++|++++|+++. +|..+
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~--------------------------------------------- 507 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDF--------------------------------------------- 507 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGG---------------------------------------------
T ss_pred HHHhccccccccccCCccEEECcCCcCCc-cChhh---------------------------------------------
Confidence 33333332 89999999999984 56521
Q ss_pred cchHHhhcCCcccccccCccCCCCCccccccCccccccccc------ccccCCCcchhhhccCCCCcEEeecCceeccCC
Q 006752 441 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL------RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG 514 (632)
Q Consensus 441 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~ 514 (632)
....+++|++|+|++|++++ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|++++|++ +.+
T Consensus 508 ----~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i 581 (636)
T 4eco_A 508 ----RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV 581 (636)
T ss_dssp ----STTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred ----hhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence 01378899999999999999 8888999999999999 56888999999999999999999999999 456
Q ss_pred CCCCCCCCCcceEecCCCcccC
Q 006752 515 LGSFKPPRSLKLLDLHGGWLLT 536 (632)
Q Consensus 515 ~~~l~~~~~L~~L~l~~N~l~~ 536 (632)
|..+. ++|+.|++++|++.+
T Consensus 582 p~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 582 NEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CSCCC--TTCCEEECCSCTTCE
T ss_pred CHhHh--CcCCEEECcCCCCcc
Confidence 77665 799999999998744
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.8e-43 Score=398.88 Aligned_cols=487 Identities=17% Similarity=0.129 Sum_probs=374.2
Q ss_pred cEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEc
Q 006752 68 EAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWL 147 (632)
Q Consensus 68 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L 147 (632)
+..|.++++ ++. +|. -.++|++|+|++|. ++...+..|.++++|++|++++|.......+..|.++++|++|+|
T Consensus 7 ~~~dcs~~~-L~~-vP~---lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 7 RIAFYRFCN-LTQ-VPQ---VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEEESCCC-SSC-CCS---SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred eEEEccCCC-CCC-CCC---CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence 356666664 222 122 45799999999998 888888899999999999999995555555788999999999999
Q ss_pred cCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHh--ccCCCCccEEEecCCCCCchhh-HhhcCCCCCcEEEccCCCC
Q 006752 148 SETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS--LQVLTKLEYLDLWGSQVSNRGA-AVLKMFPRLSFLNLAWTGV 224 (632)
Q Consensus 148 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l 224 (632)
++|.+.+..|..|.++++|++|++++|.+.+..+.. ++++++|++|++++|.+++..+ ..++++++|++|++++|.+
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 999999988999999999999999999998865554 8999999999999999987655 5799999999999999998
Q ss_pred CCCC-----CC--CCCCEEECCCCcccc-hhccccCCCC------CcEEEeeCCCCCchhhhh-----------------
Q 006752 225 TKLP-----NI--SSLECLNLSNCTIDS-ILEGNENKAP------LAKISLAGTTFINEREAF----------------- 273 (632)
Q Consensus 225 ~~l~-----~l--~~L~~L~L~~~~l~~-~~~~~~~~~~------L~~L~l~~n~~~~~~~~~----------------- 273 (632)
+.+. .+ ++|+.|++++|.+.. .+..+..+++ |++|++++|.+.+.....
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 7643 33 899999999999884 5555555544 999999999765422110
Q ss_pred ------------------hhh--cCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEE
Q 006752 274 ------------------LYI--ETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL 331 (632)
Q Consensus 274 ------------------~~~--~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 331 (632)
.+. ..++|+.|++++|.+... ..+..+++|+.|++++|.+++..+..+..+ ++|++|
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L 319 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVL 319 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEE
Confidence 011 136789999999988876 567888999999999999988777777776 899999
Q ss_pred EccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhc
Q 006752 332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNL 411 (632)
Q Consensus 332 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~ 411 (632)
++++|++++..+..+ +.+++|++|++++|++++..+..|..+++|++|++++|.+++.... .....+
T Consensus 320 ~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~------------~~L~~L 386 (844)
T 3j0a_A 320 NLSYNLLGELYSSNF-YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI------------PSIPDI 386 (844)
T ss_dssp EEESCCCSCCCSCSC-SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSC------------CSCSEE
T ss_pred ECCCCCCCccCHHHh-cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCC------------CCcchh
Confidence 999999887766555 6788999999999998887777788899999999999998864221 112223
Q ss_pred eeccccccccccccccchhhhcccccccccch---HHhhcCCcccccccCccCCCCCccc-cccCcccccccccccccCC
Q 006752 412 FLHAYGYVIFPSSVLAGFIQQVGAETDLVLSL---TALQNLNHLERLNLEQTQVSDATLF-PLSTFKELIHLSLRNASLT 487 (632)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~ 487 (632)
.........+|.. ...+..+++++|.+..+ ..+.++++|++|+|++|++++..+. .+..+++|+.|+|++|.++
T Consensus 387 ~l~~N~l~~l~~~--~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~ 464 (844)
T 3j0a_A 387 FLSGNKLVTLPKI--NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464 (844)
T ss_dssp EEESCCCCCCCCC--CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCS
T ss_pred ccCCCCccccccc--ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccc
Confidence 3333333344433 34566778888877543 3466889999999999999875443 3556788999999999887
Q ss_pred -----CcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCC
Q 006752 488 -----DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPS 562 (632)
Q Consensus 488 -----~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (632)
+..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.. .+...+. ......++
T Consensus 465 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----------l~~~~~~-~~L~~L~L 533 (844)
T 3j0a_A 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV----------LSHNDLP-ANLEILDI 533 (844)
T ss_dssp SSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS----------CCCCCCC-SCCCEEEE
T ss_pred cccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc----------cChhhhh-ccccEEEC
Confidence 3445668888999999999999999888888889999999999998733 1111111 33466778
Q ss_pred CCCCCCCCCCCcchhhhhh---hcccCC
Q 006752 563 DQIGSNGPSPSRTSLRASL---VKQKQD 587 (632)
Q Consensus 563 ~~n~~~g~ip~~~~~~~~~---~n~~~~ 587 (632)
++|+++|.+|..+..+..+ .|.+..
T Consensus 534 s~N~l~~~~~~~~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 534 SRNQLLAPNPDVFVSLSVLDITHNKFIC 561 (844)
T ss_dssp EEECCCCCCSCCCSSCCEEEEEEECCCC
T ss_pred CCCcCCCCChhHhCCcCEEEecCCCccc
Confidence 8888998888887665544 455554
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.7e-43 Score=390.88 Aligned_cols=408 Identities=15% Similarity=0.164 Sum_probs=306.0
Q ss_pred CcccEEeccCCCCCCHHHHHHhccCCCccEEEc-CCCCCCCchhH-----------------------------------
Q 006752 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNV-ADCRRVTSSAL----------------------------------- 108 (632)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~i~~~~~----------------------------------- 108 (632)
.+++.|+|+++ .+.+.++..++++++|++|+| ++|. +.+..+
T Consensus 323 ~~V~~L~Ls~~-~L~G~ip~~l~~L~~L~~LdLss~N~-lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGF-GAKGRVPDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTTT-CCEEEECGGGGGCTTCCEEESCCTTH-HHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECccC-CCCCcCchHHhccccceEeeeccccc-ccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 46999999999 477778889999999999999 6654 322200
Q ss_pred -----Hhhh-----------CCCCcCEEeccC--CCCCChhhHhhhcCCCCccEEEccCCCCCH----------------
Q 006752 109 -----WALT-----------GMTCLKELDLSR--CVKVTDAGMKHLLSISTLEKLWLSETGLTA---------------- 154 (632)
Q Consensus 109 -----~~l~-----------~l~~L~~L~L~~--~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~---------------- 154 (632)
..+. ....++.+.+.. | .+++ .+..++++++|++|+|++|.+++
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N-~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSC-EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccC-cccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 0000 111222222222 2 3444 45678888888888888888887
Q ss_pred -hHHHHhc--CCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCC-CCc-hhhHhhcCCC-------CCcEEEccCC
Q 006752 155 -DGIALLS--SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-VSN-RGAAVLKMFP-------RLSFLNLAWT 222 (632)
Q Consensus 155 -~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~l~~n 222 (632)
.+|..+. ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..++ +|++|++++|
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred ccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 3666666 88888888888888888888888888888888888887 887 7777666554 8888888888
Q ss_pred CCCCCC------CCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCC-ccEEeccCCCCCch-
Q 006752 223 GVTKLP------NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSL-LSFLDVSNSSLSRF- 294 (632)
Q Consensus 223 ~l~~l~------~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~ls~n~l~~~- 294 (632)
.++.+| ++++|++|++++|.+..+| .+..+++|+.|++++|.+..+|.. +..+++ |+.|++++|.++.+
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~--l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPED--FCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTT--SCEECTTCCEEECCSSCCCSCC
T ss_pred cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHH--HhhccccCCEEECcCCCCCcCc
Confidence 877655 4688888999888888777 777888899999999888866654 456777 89999999888866
Q ss_pred hhhhcC--CCCCeeeccCCCCCchHHHHH---Hh-cCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHH
Q 006752 295 CFLTQM--KALEHLDLSSSMIGDDSVEMV---AC-VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 368 (632)
Q Consensus 295 ~~l~~~--~~L~~L~l~~n~l~~~~~~~~---~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 368 (632)
..+... ++|+.|++++|.+.+.+|... .. .+++|++|++++|+++.. +..++..+++|+.|++++|+++....
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l-p~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC-CHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc-CHHHHccCCCCCEEECCCCcCCccCh
Confidence 333333 348899999998876544221 11 114799999999999854 44444678999999999999884333
Q ss_pred HHHhc-------CCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccccccc
Q 006752 369 SYMSM-------MPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVL 441 (632)
Q Consensus 369 ~~l~~-------~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ 441 (632)
..+.. +++|+.|+|++|+++. +|..+.
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~--------------------------------------------- 748 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFR--------------------------------------------- 748 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGS---------------------------------------------
T ss_pred HHhccccccccccCCccEEECCCCCCcc-chHHhh---------------------------------------------
Confidence 33322 2389999999999984 455210
Q ss_pred chHHhhcCCcccccccCccCCCCCccccccCccccccccccc------ccCCCcchhhhccCCCCcEEeecCceeccCCC
Q 006752 442 SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN------ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 515 (632)
Q Consensus 442 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 515 (632)
...+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++ +.+|
T Consensus 749 ----~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 749 ----ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp ----TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred ----hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence 1367899999999999998 688888999999999976 788888999999999999999999999 5567
Q ss_pred CCCCCCCCcceEecCCCcc
Q 006752 516 GSFKPPRSLKLLDLHGGWL 534 (632)
Q Consensus 516 ~~l~~~~~L~~L~l~~N~l 534 (632)
..+. ++|+.||+++|++
T Consensus 823 ~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 823 EKLT--PQLYILDIADNPN 839 (876)
T ss_dssp SCCC--SSSCEEECCSCTT
T ss_pred Hhhc--CCCCEEECCCCCC
Confidence 7665 6999999999987
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.7e-43 Score=382.83 Aligned_cols=405 Identities=18% Similarity=0.202 Sum_probs=316.7
Q ss_pred CCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEE
Q 006752 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169 (632)
Q Consensus 90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 169 (632)
+++++|++++|. ++...+.+|.++++|++|++++| .++...+..|.++++|++|++++|.+++..+..|..+++|++|
T Consensus 28 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCc-cCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 579999999998 88888889999999999999999 7888778889999999999999999998878899999999999
Q ss_pred EcCCCCCChHHHHhccCCCCccEEEecCCCCCc-hhhHhhcCCCCCcEEEccCCCCCCCC-----CCCCC----CEEECC
Q 006752 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSL----ECLNLS 239 (632)
Q Consensus 170 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~l~-----~l~~L----~~L~L~ 239 (632)
++++|.+.+..+..++++++|++|++++|.+++ ..|..++++++|++|++++|.++.++ .+++| ++|+++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 999999988665578999999999999999987 46889999999999999999988643 44566 899999
Q ss_pred CCcccchhccccCCCCCcEEEeeCCCCCch--h-----------------------------------------------
Q 006752 240 NCTIDSILEGNENKAPLAKISLAGTTFINE--R----------------------------------------------- 270 (632)
Q Consensus 240 ~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~--~----------------------------------------------- 270 (632)
+|.+..+++..+...+|++|++++|..... +
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 999998887777666899999988732210 0
Q ss_pred --------hhhhhhcCCCccEEeccCCCCCch-hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcch
Q 006752 271 --------EAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA 341 (632)
Q Consensus 271 --------~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 341 (632)
....+..+++|++|++++|.+..+ ..+..+ +|++|++++|.+.... . .. +++|++|++++|.+.+.
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~-~--~~-l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFP-T--LK-LKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCC-B--CB-CSSCCEEEEESCBSCCB
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccC-c--cc-ccccCEEeCcCCccccc
Confidence 001234567888888888888776 445556 8888888888887432 2 22 37889999998887765
Q ss_pred hHHHHHhcCCCCcEEEccCCCCChHH--HHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccc
Q 006752 342 GVGILAGHLPNLEILSLSGTQIDDYA--ISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYV 419 (632)
Q Consensus 342 ~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (632)
.+. ..+++|++|++++|++++.. +..+..+++|++|++++|.+.+..+. +..
T Consensus 341 ~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~---------------------- 394 (570)
T 2z63_A 341 FSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG---------------------- 394 (570)
T ss_dssp CCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EET----------------------
T ss_pred ccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccc----------------------
Confidence 443 56889999999999887654 56788889999999999988775332 211
Q ss_pred ccccccccchhhhcccccccccch---HHhhcCCcccccccCccCCCCCccccccCcccccccccccccCC-Ccchhhhc
Q 006752 420 IFPSSVLAGFIQQVGAETDLVLSL---TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT-DVSLHQLS 495 (632)
Q Consensus 420 ~~~~~~~~~~l~~l~~~~~~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~ 495 (632)
...++.+++++|.+... ..+.++++|++|++++|.+++..+..+..+++|++|++++|+++ +.+|..+.
T Consensus 395 -------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~ 467 (570)
T 2z63_A 395 -------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467 (570)
T ss_dssp -------CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred -------cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh
Confidence 13455666666665332 24667777777777777777777777777777777777777776 45667777
Q ss_pred cCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752 496 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 534 (632)
Q Consensus 496 ~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l 534 (632)
.+++|++|++++|++++..|..|..+++|++|++++|++
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 777777777777777777777777777777777777776
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.9e-42 Score=372.43 Aligned_cols=463 Identities=15% Similarity=0.132 Sum_probs=328.1
Q ss_pred cCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCcc
Q 006752 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (632)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 143 (632)
|+...+.|.+++. ++. ++.. -.++|++|++++|. ++...+.+|.++++|++|++++| .++...+..|.++++|+
T Consensus 4 C~~~~~c~~~~~~-l~~-ip~~--~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 4 CDASGVCDGRSRS-FTS-IPSG--LTAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLE 77 (549)
T ss_dssp ECTTSEEECTTSC-CSS-CCSC--CCTTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred CCCCceEECCCCc-ccc-cccc--CCCCccEEECcCCc-cCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCC
Confidence 3445556777764 321 1221 23789999999998 88888888999999999999999 78888788899999999
Q ss_pred EEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChH-HHHhccCCCCccEEEecCCC-CCchhhHhhcCCCCCcEEEccC
Q 006752 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQ-VSNRGAAVLKMFPRLSFLNLAW 221 (632)
Q Consensus 144 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~ 221 (632)
+|++++|.+++..+..|..+++|++|++++|.+.+. .+..++++++|++|++++|. +....+..+..+++|++|++++
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 999999999998888899999999999999999863 45678999999999999998 4544456899999999999999
Q ss_pred CCCCC-----CCCCCCCCEEECCCCcccchhcccc-CCCCCcEEEeeCCCCCchh--hhhhhhcCCCccEEeccCCCCCc
Q 006752 222 TGVTK-----LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINER--EAFLYIETSLLSFLDVSNSSLSR 293 (632)
Q Consensus 222 n~l~~-----l~~l~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~ls~n~l~~ 293 (632)
|.+++ +..+++|++|++++|.+..++..+. .+++|++|++++|.+.+.+ +......+++|+.|++++|.+++
T Consensus 158 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred CcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 98875 5578899999999999988777654 6899999999999998753 11123457899999999998876
Q ss_pred h------hhhhcCCCCCeeeccCCCCCchH------HHHHHhcCCCCcEEEccCCcCcchhH----HHHHhcCCCCcEEE
Q 006752 294 F------CFLTQMKALEHLDLSSSMIGDDS------VEMVACVGANLRNLNLSNTRFSSAGV----GILAGHLPNLEILS 357 (632)
Q Consensus 294 ~------~~l~~~~~L~~L~l~~n~l~~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~~L~~L~ 357 (632)
. ..+..+++|+.+++++|.+.+.. ...+... ++++.|++.++.+..... ..+....++|++|+
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~ 316 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL-GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC-TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhh-cccccccccccccchhhhcccchhhhhhcccceEEE
Confidence 4 33456788888888887654321 0001111 445555555444332110 00112234455555
Q ss_pred ccCCCCChHHHHHHhcCCCccEEEccCCccccccCCC---ccchhhhhhhhhhhhhceeccccccccccccccchhhhcc
Q 006752 358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSG---QMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVG 434 (632)
Q Consensus 358 L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 434 (632)
+++|.++......+..+++|++|++++|++++.+|.. +. ....++.|+
T Consensus 317 l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-----------------------------~l~~L~~L~ 367 (549)
T 2z81_A 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG-----------------------------AWPSLQTLV 367 (549)
T ss_dssp EESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTT-----------------------------SSTTCCEEE
T ss_pred eccCccccCCHHHHhcCccccEEEccCCccccccccchhhhh-----------------------------ccccCcEEE
Confidence 5555544322222234555555555555554433210 00 012344444
Q ss_pred cccccccch----HHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCcee
Q 006752 435 AETDLVLSL----TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 510 (632)
Q Consensus 435 ~~~~~l~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l 510 (632)
+++|.+..+ ..+..+++|++|++++|++++ +|..+..+++|++|++++|++++.. ..+ .++|++|++++|++
T Consensus 368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l~-~~~--~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVK-TCI--PQTLEVLDVSNNNL 443 (549)
T ss_dssp CTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCCC-TTS--CTTCSEEECCSSCC
T ss_pred ccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCccccc-chh--cCCceEEECCCCCh
Confidence 444444332 247889999999999999996 7888888999999999999998743 332 26899999999999
Q ss_pred ccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCCCcchhhhhh
Q 006752 511 TNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL 581 (632)
Q Consensus 511 ~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip~~~~~~~~~ 581 (632)
++.. ..+++|++|++++|++..-+. . ... ......++++|++++.+|..++.+..+
T Consensus 444 ~~~~----~~l~~L~~L~Ls~N~l~~ip~---~-~~l-------~~L~~L~Ls~N~l~~~~~~~~~~l~~L 499 (549)
T 2z81_A 444 DSFS----LFLPRLQELYISRNKLKTLPD---A-SLF-------PVLLVMKISRNQLKSVPDGIFDRLTSL 499 (549)
T ss_dssp SCCC----CCCTTCCEEECCSSCCSSCCC---G-GGC-------TTCCEEECCSSCCCCCCTTGGGGCTTC
T ss_pred hhhc----ccCChhcEEECCCCccCcCCC---c-ccC-------ccCCEEecCCCccCCcCHHHHhcCccc
Confidence 9853 467899999999999843111 1 112 234667889999999888877766543
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-40 Score=373.59 Aligned_cols=424 Identities=13% Similarity=0.119 Sum_probs=337.4
Q ss_pred CCccEEEcCCCCCCCchhHHhhhCCCCcCEEec-cCCCCCChhhH-----------------------------------
Q 006752 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDL-SRCVKVTDAGM----------------------------------- 133 (632)
Q Consensus 90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L-~~~~~l~~~~~----------------------------------- 133 (632)
.+++.|+|+++. +.+..+.+|+++++|++|+| ++| .+.+..+
T Consensus 323 ~~V~~L~Ls~~~-L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGFG-AKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTTTC-CEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECccCC-CCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 579999999998 88888899999999999999 665 3322200
Q ss_pred -----hhh-----------cCCCCccEEEccC--CCCCHhHHHHhcCCCCCCEEEcCCCCCCh-----------------
Q 006752 134 -----KHL-----------LSISTLEKLWLSE--TGLTADGIALLSSLQNLSVLDLGGLPVTD----------------- 178 (632)
Q Consensus 134 -----~~l-----------~~l~~L~~L~L~~--n~i~~~~~~~~~~l~~L~~L~L~~n~i~~----------------- 178 (632)
..+ .....++.+.+.. |.+++ +|..|.++++|++|+|++|.+++
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 000 0112233333433 66776 67889999999999999999999
Q ss_pred HHHHhcc--CCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCC-CCC--C-----------CCCCCCCEEECCCCc
Q 006752 179 LVLRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTK--L-----------PNISSLECLNLSNCT 242 (632)
Q Consensus 179 ~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~--l-----------~~l~~L~~L~L~~~~ 242 (632)
.+|..++ ++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ + ..+++|++|++++|.
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 4788877 99999999999999999999999999999999999998 764 2 245699999999999
Q ss_pred ccchhc--cccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch-hhhhcCCC-CCeeeccCCCCCchHH
Q 006752 243 IDSILE--GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKA-LEHLDLSSSMIGDDSV 318 (632)
Q Consensus 243 l~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~-L~~L~l~~n~l~~~~~ 318 (632)
+..+|. .+..+++|++|++++|.+..+| .+..+++|+.|++++|.+..+ ..+..+++ |++|++++|.++ .+|
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred CCccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCc
Confidence 999998 8999999999999999999766 567899999999999999977 56888998 999999999998 455
Q ss_pred HHHHhcC-CCCcEEEccCCcCcchhHHHH--Hh--cCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCC
Q 006752 319 EMVACVG-ANLRNLNLSNTRFSSAGVGIL--AG--HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPS 393 (632)
Q Consensus 319 ~~~~~~~-~~L~~L~l~~n~l~~~~~~~~--~~--~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~ 393 (632)
..+.... ++|+.|++++|++.+..+... .+ .+++|+.|++++|+++......+..+++|+.|+|++|+++. +|.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~-ip~ 714 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS-IPE 714 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC-CCT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc-cCh
Confidence 4443331 349999999999987544211 01 34589999999999996666666789999999999999994 565
Q ss_pred CccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcccccc--
Q 006752 394 GQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS-- 471 (632)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-- 471 (632)
.+.... .+.+.++++|++|+|++|+++. +|..+.
T Consensus 715 ~~~~~~-------------------------------------------~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~ 750 (876)
T 4ecn_A 715 NSLKPK-------------------------------------------DGNYKNTYLLTTIDLRFNKLTS-LSDDFRAT 750 (876)
T ss_dssp TSSSCT-------------------------------------------TSCCTTGGGCCEEECCSSCCCC-CCGGGSTT
T ss_pred HHhccc-------------------------------------------cccccccCCccEEECCCCCCcc-chHHhhhc
Confidence 432100 0013456699999999999995 788886
Q ss_pred CcccccccccccccCCCcchhhhccCCCCcEEeecC------ceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHH
Q 006752 472 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD------AVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCK 545 (632)
Q Consensus 472 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~------N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~ 545 (632)
.+++|+.|+|++|++++ +|..+..+++|+.|++++ |++.+.+|..+..+++|+.|++++|++.. .
T Consensus 751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~--I------ 821 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK--V------ 821 (876)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB--C------
T ss_pred cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc--c------
Confidence 89999999999999999 688899999999999976 88999999999999999999999999822 2
Q ss_pred HcCCeeeeeccccccCCCCCCCCCCCCCcchhh
Q 006752 546 MHPRIEVWHELSVICPSDQIGSNGPSPSRTSLR 578 (632)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~n~~~g~ip~~~~~~ 578 (632)
|.- +. .....+++++|.+...-+..+...
T Consensus 822 --p~~-l~-~~L~~LdLs~N~l~~i~~~~~~~~ 850 (876)
T 4ecn_A 822 --DEK-LT-PQLYILDIADNPNISIDVTSVCPY 850 (876)
T ss_dssp --CSC-CC-SSSCEEECCSCTTCEEECGGGHHH
T ss_pred --CHh-hc-CCCCEEECCCCCCCccChHHcccc
Confidence 211 11 245677888998876555554433
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.8e-41 Score=365.43 Aligned_cols=414 Identities=16% Similarity=0.160 Sum_probs=258.3
Q ss_pred cccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEE
Q 006752 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145 (632)
Q Consensus 66 ~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L 145 (632)
++++|++++|. +....+..|+++++|++|++++|. ++...+.+|.++++|++|++++| .++.... . .+++|++|
T Consensus 53 ~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~-~--~l~~L~~L 126 (562)
T 3a79_B 53 RTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHN-RLQNISC-C--PMASLRHL 126 (562)
T ss_dssp TCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTS-CCCEECS-C--CCTTCSEE
T ss_pred CcCEEECCCCC-ccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCC-cCCccCc-c--ccccCCEE
Confidence 57777777773 444444566777777777777776 66666666777777777777777 4553222 2 67777777
Q ss_pred EccCCCCCHhH-HHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCc--cEEEecCCCC--CchhhHhhcCCC-CCcEEEc
Q 006752 146 WLSETGLTADG-IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKL--EYLDLWGSQV--SNRGAAVLKMFP-RLSFLNL 219 (632)
Q Consensus 146 ~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~l 219 (632)
++++|.+++.. |..|.++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+..+. ..-.+++
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 77777776532 35677777777777777777653 33344444 7777777776 555555555443 1113344
Q ss_pred cCCCCCC------CCCCCCCCEEECCCCc-----ccchhccccCCCCCcEEEeeCCCCCchh--hhhhhhcCCCccEEec
Q 006752 220 AWTGVTK------LPNISSLECLNLSNCT-----IDSILEGNENKAPLAKISLAGTTFINER--EAFLYIETSLLSFLDV 286 (632)
Q Consensus 220 ~~n~l~~------l~~l~~L~~L~L~~~~-----l~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~l 286 (632)
++|.+.. +..+++|+.+++++|. +......+...++|+.+++.++.+.+.. ........++|++|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 4444432 2245666777776664 1222333445556666666555544321 1111112346666666
Q ss_pred cCCCCCch--hhh-----hcC--------------------------CCCCeeeccCCCCCchHHHHHHhcCCCCcEEEc
Q 006752 287 SNSSLSRF--CFL-----TQM--------------------------KALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333 (632)
Q Consensus 287 s~n~l~~~--~~l-----~~~--------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l 333 (632)
++|.+++. ..+ ..+ .+|++|++++|.+..... .... ++|++|++
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l-~~L~~L~l 360 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSP-SSFTFLNF 360 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSC-CCCCEEEC
T ss_pred eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC--ccCC-CCceEEEC
Confidence 66665532 111 222 334455555544432210 0112 55666666
Q ss_pred cCCcCcchhHHHHHhcCCCCcEEEccCCCCCh--HHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhc
Q 006752 334 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDD--YAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNL 411 (632)
Q Consensus 334 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~ 411 (632)
++|++++..+..+ +.+++|++|++++|++++ ..|..+..+++|++|++++|.+++.+|..
T Consensus 361 ~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----------------- 422 (562)
T 3a79_B 361 TQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR----------------- 422 (562)
T ss_dssp CSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC-----------------
T ss_pred CCCccccchhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh-----------------
Confidence 6666555444433 445566666666666554 33444555666666666666665543432
Q ss_pred eeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcch
Q 006752 412 FLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 491 (632)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 491 (632)
.+..+++|++|++++|.+++..|..+. ++|++|+|++|+++. +|
T Consensus 423 ---------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip 466 (562)
T 3a79_B 423 ---------------------------------TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IP 466 (562)
T ss_dssp ---------------------------------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CC
T ss_pred ---------------------------------hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cC
Confidence 366789999999999999987777654 799999999999997 56
Q ss_pred hhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHH
Q 006752 492 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCK 545 (632)
Q Consensus 492 ~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~ 545 (632)
..+..+++|++|++++|++++..+..+..+++|+.|++++|++.|+|...++.+
T Consensus 467 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~ 520 (562)
T 3a79_B 467 KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 520 (562)
T ss_dssp TTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHH
T ss_pred hhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHH
Confidence 666699999999999999997655558999999999999999999998877755
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-40 Score=367.87 Aligned_cols=392 Identities=14% Similarity=0.141 Sum_probs=322.9
Q ss_pred CCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCC------CC--------------------------hhhHhhhc
Q 006752 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVK------VT--------------------------DAGMKHLL 137 (632)
Q Consensus 90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~------l~--------------------------~~~~~~l~ 137 (632)
.+++.|+|+++. +.+..+.+++++++|++|+|++|.. +. ...+..+.
T Consensus 81 ~~V~~L~L~~~~-l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFG-ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSC-CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcc-cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 589999999998 8888888999999999999999831 01 00000000
Q ss_pred -------------------CCCCccEEEcc--CCCCCHhHHHHhcCCCCCCEEEcCCCCCChH-----------------
Q 006752 138 -------------------SISTLEKLWLS--ETGLTADGIALLSSLQNLSVLDLGGLPVTDL----------------- 179 (632)
Q Consensus 138 -------------------~l~~L~~L~L~--~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~----------------- 179 (632)
....++.+.+. .|++++ +|..++++++|++|++++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 01122222222 467777 788899999999999999999995
Q ss_pred HHHhcc--CCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCC-CCC--CC----C------CCCCCEEECCCCccc
Q 006752 180 VLRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTK--LP----N------ISSLECLNLSNCTID 244 (632)
Q Consensus 180 ~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~--l~----~------l~~L~~L~L~~~~l~ 244 (632)
+|..++ ++++|++|++++|.+.+..|..+.++++|++|++++|. +++ +| . +++|++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 888888 99999999999999999999999999999999999998 875 33 3 389999999999999
Q ss_pred chhc--cccCCCCCcEEEeeCCCCC-chhhhhhhhcCCCccEEeccCCCCCch-hhhhcCCC-CCeeeccCCCCCchHHH
Q 006752 245 SILE--GNENKAPLAKISLAGTTFI-NEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKA-LEHLDLSSSMIGDDSVE 319 (632)
Q Consensus 245 ~~~~--~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~-L~~L~l~~n~l~~~~~~ 319 (632)
.+|. .+..+++|++|++++|.+. .+| .+..+++|++|++++|.++.+ ..+..+++ |++|++++|.++ ..|.
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 9998 8999999999999999998 555 566889999999999999877 56888999 999999999998 4555
Q ss_pred HHHhc-CCCCcEEEccCCcCcchhHHHHHh-------cCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccccc
Q 006752 320 MVACV-GANLRNLNLSNTRFSSAGVGILAG-------HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMY 391 (632)
Q Consensus 320 ~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~ 391 (632)
.+... .++|++|++++|++++..+..+ . .+++|++|++++|++++..+..+..+++|++|++++|+++. +
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~-i 472 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNF-DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-I 472 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSS-CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB-C
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhh-cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC-c
Confidence 44433 1389999999999998777654 3 56799999999999997666667789999999999999994 5
Q ss_pred CCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcccccc
Q 006752 392 PSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 471 (632)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 471 (632)
|....... ...+.++++|++|+|++|+++. +|..+.
T Consensus 473 ~~~~~~~~-------------------------------------------~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~ 508 (636)
T 4eco_A 473 PKNSLKDE-------------------------------------------NENFKNTYLLTSIDLRFNKLTK-LSDDFR 508 (636)
T ss_dssp CSSSSEET-------------------------------------------TEECTTGGGCCEEECCSSCCCB-CCGGGS
T ss_pred CHHHhccc-------------------------------------------cccccccCCccEEECcCCcCCc-cChhhh
Confidence 65321100 0013345699999999999995 777776
Q ss_pred --CcccccccccccccCCCcchhhhccCCCCcEEee------cCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752 472 --TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI------RDAVLTNSGLGSFKPPRSLKLLDLHGGWL 534 (632)
Q Consensus 472 --~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l------s~N~l~~~~~~~l~~~~~L~~L~l~~N~l 534 (632)
.+++|+.|+|++|++++ +|..+..+++|++|++ ++|++.+.+|..+..+++|++|++++|++
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 89999999999999999 7889999999999999 56889999999999999999999999998
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-40 Score=358.15 Aligned_cols=396 Identities=16% Similarity=0.130 Sum_probs=258.2
Q ss_pred cEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEc
Q 006752 68 EAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWL 147 (632)
Q Consensus 68 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L 147 (632)
++||+++|+ ++ .++..+. ++|++|++++|. ++...+.+|.++++|++|++++| .+++..+..|+++++|++|++
T Consensus 3 ~~l~ls~n~-l~-~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNG-LI-HVPKDLS--QKTTILNISQNY-ISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSC-CS-SCCCSCC--TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCC-cc-ccccccc--ccccEEECCCCc-ccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEec
Confidence 578999985 43 2333333 799999999998 88888888999999999999999 788877888999999999999
Q ss_pred cCCCCCHhHHHHhcCCCCCCEEEcCCCCCCh-HHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCC--cEEEccCCCC
Q 006752 148 SETGLTADGIALLSSLQNLSVLDLGGLPVTD-LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL--SFLNLAWTGV 224 (632)
Q Consensus 148 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l 224 (632)
++|+++. +|.. .+++|++|++++|.+.+ ..|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+
T Consensus 77 s~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 77 SHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred CCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 9999985 3333 78999999999999887 356788999999999999999876 346667777 9999988887
Q ss_pred --CC--CCCCCCCC----EEECCCCcccc-hhc-cccCCCCCcEEEeeCCC-------CCchhhhhhhhcCCCccEEecc
Q 006752 225 --TK--LPNISSLE----CLNLSNCTIDS-ILE-GNENKAPLAKISLAGTT-------FINEREAFLYIETSLLSFLDVS 287 (632)
Q Consensus 225 --~~--l~~l~~L~----~L~L~~~~l~~-~~~-~~~~~~~L~~L~l~~n~-------~~~~~~~~~~~~~~~L~~L~ls 287 (632)
.. ...+..++ .+++++|.+.+ ++. .+..+++|+.+++++|. +.+..+ .+..+++|+.|+++
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~ 228 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLN 228 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhcccc
Confidence 32 11233332 45666666552 222 33367777777777775 332222 34456666666666
Q ss_pred CCCCCch-----hhhhcCCCCCeeeccCCCCCchHHHHH-----HhcCCCCcEEEccCCcCcchhHHHHHh--cCCCCcE
Q 006752 288 NSSLSRF-----CFLTQMKALEHLDLSSSMIGDDSVEMV-----ACVGANLRNLNLSNTRFSSAGVGILAG--HLPNLEI 355 (632)
Q Consensus 288 ~n~l~~~-----~~l~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~ 355 (632)
+|.+.+. ......++|++|++++|.+++..|..+ ..+ +.|+.+++++|.+ ......+.. ..++|+.
T Consensus 229 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l-~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~ 306 (520)
T 2z7x_B 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL-KALSIHQVVSDVF-GFPQSYIYEIFSNMNIKN 306 (520)
T ss_dssp EEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCC-CEEEEEEEEECCC-CSCTHHHHHHHHTCCCSE
T ss_pred ccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccC-ceeEeccccccce-ecchhhhhcccccCceeE
Confidence 6665543 111123466666666666655555444 333 5666666666665 111111111 1145666
Q ss_pred EEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccc
Q 006752 356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGA 435 (632)
Q Consensus 356 L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 435 (632)
|++++|.+.+.. .+..+++|++|++++|++++..|.
T Consensus 307 L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~------------------------------------------ 342 (520)
T 2z7x_B 307 FTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFE------------------------------------------ 342 (520)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT------------------------------------------
T ss_pred EEcCCCcccccc--chhhCCcccEEEeECCccChhhhh------------------------------------------
Confidence 666666654322 014566666666666666665454
Q ss_pred ccccccchHHhhcCCcccccccCccCCCC--CccccccCcccccccccccccCCCcch-hhhccCCCCcEEeecCceecc
Q 006752 436 ETDLVLSLTALQNLNHLERLNLEQTQVSD--ATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 436 ~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~ 512 (632)
.+.++++|++|++++|++++ ..|..++.+++|++|++++|++++.+| ..+..+++|++|++++|++++
T Consensus 343 ---------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 343 ---------NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp ---------TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred ---------hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 24455667777777777665 344556666777777777777766333 346666677777777777766
Q ss_pred CCCCCCCCCCCcceEecCCCcc
Q 006752 513 SGLGSFKPPRSLKLLDLHGGWL 534 (632)
Q Consensus 513 ~~~~~l~~~~~L~~L~l~~N~l 534 (632)
..|..+. ++|++|++++|++
T Consensus 414 ~~~~~l~--~~L~~L~Ls~N~l 433 (520)
T 2z7x_B 414 TIFRCLP--PRIKVLDLHSNKI 433 (520)
T ss_dssp GGGGSCC--TTCCEEECCSSCC
T ss_pred chhhhhc--ccCCEEECCCCcc
Confidence 5555543 5667777777765
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-38 Score=338.09 Aligned_cols=372 Identities=17% Similarity=0.131 Sum_probs=266.8
Q ss_pred cEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhH-HHHhcCCCCCCEEEc
Q 006752 93 RSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADG-IALLSSLQNLSVLDL 171 (632)
Q Consensus 93 ~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L 171 (632)
+.++.+++. ++..+. -.++|++|++++| .++...+..|.++++|++|++++|.+.+.+ +..|..+++|++|++
T Consensus 13 ~~~~c~~~~-l~~lp~----l~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 13 YNAICINRG-LHQVPE----LPAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TEEECCSSC-CSSCCC----CCTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred cccCcCCCC-cccCCC----CCCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 345555554 443221 1256777777777 566666666777777777777777665333 445667777777777
Q ss_pred CCCCCChHHHHhccCCCCccEEEecCCCCCchhhHh--hcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhcc
Q 006752 172 GGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAV--LKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEG 249 (632)
Q Consensus 172 ~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~ 249 (632)
++|.+.+..|..|+++++|++|++++|.+++..+.. +..+++|++|++++|.++++. |..
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------------~~~ 148 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ------------------PAS 148 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC------------------CCG
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC------------------ccc
Confidence 777776666666777777777777777776644443 555555555555555444321 222
Q ss_pred -ccCCCCCcEEEeeCCCCCchhhh-hhhhcCCCccEEeccCCCCCchh----------hhhcCCCCCeeeccCCCCCchH
Q 006752 250 -NENKAPLAKISLAGTTFINEREA-FLYIETSLLSFLDVSNSSLSRFC----------FLTQMKALEHLDLSSSMIGDDS 317 (632)
Q Consensus 250 -~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~----------~l~~~~~L~~L~l~~n~l~~~~ 317 (632)
+..+++|++|++++|.+.+.++. +......+|+.|++++|.+.... .+..+++|++|++++|.+++..
T Consensus 149 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 228 (455)
T 3v47_A 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228 (455)
T ss_dssp GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc
Confidence 33455555555555555443221 11112245666666666665541 1335578889999999888888
Q ss_pred HHHHHhcC--CCCcEEEccCCcCcchhH----------HHHH-hcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccC
Q 006752 318 VEMVACVG--ANLRNLNLSNTRFSSAGV----------GILA-GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384 (632)
Q Consensus 318 ~~~~~~~~--~~L~~L~l~~n~l~~~~~----------~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~ 384 (632)
+..+.... ++|+.|++++|...+... ..+. -.+++|++|++++|.+++..+..++.+++|++|++++
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT
T ss_pred hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCC
Confidence 77776542 688889988875443211 1110 1246899999999999998888999999999999999
Q ss_pred CccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCC
Q 006752 385 TDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 464 (632)
Q Consensus 385 n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~ 464 (632)
|++++..|. .+.++++|++|++++|.+++
T Consensus 309 n~l~~~~~~---------------------------------------------------~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 309 NEINKIDDN---------------------------------------------------AFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp SCCCEECTT---------------------------------------------------TTTTCTTCCEEECCSSCCCE
T ss_pred CcccccChh---------------------------------------------------HhcCcccCCEEECCCCccCC
Confidence 999987666 46778999999999999999
Q ss_pred CccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHH
Q 006752 465 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA 539 (632)
Q Consensus 465 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~ 539 (632)
..+..|..+++|++|+|++|++++..|.+|..+++|++|++++|++++..+..|..+++|++|++++|++.|.+.
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 889999999999999999999999989999999999999999999999888888999999999999999988774
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.1e-38 Score=332.50 Aligned_cols=366 Identities=17% Similarity=0.181 Sum_probs=233.0
Q ss_pred CcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCC-chhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCcc
Q 006752 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT-SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (632)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~-~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 143 (632)
+++++|+|++| .+.+..+..|+++++|++|++++|. +. ...+.+|.++++|++|++++| .++...+..|.++++|+
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLE 106 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCC
T ss_pred CccCEEEecCC-ccCcCChhHhccCccccEEECcCCc-ccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCC
Confidence 34555555555 2333333445555555555555554 22 223334455555555555555 34444444445555555
Q ss_pred EEEccCCCCCHhHHHH--hcCCCCCCEEEcCCCCCChHHHHh-ccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEcc
Q 006752 144 KLWLSETGLTADGIAL--LSSLQNLSVLDLGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220 (632)
Q Consensus 144 ~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 220 (632)
+|++++|.+++..+.. |..+++|++|++++|.+.+..|.. +.++++|++|++++|.+++..+..+..+
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--------- 177 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF--------- 177 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG---------
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc---------
Confidence 5555555554433332 444555555555555544443332 4445555555555555444444433332
Q ss_pred CCCCCCCCCCCCCCEEECCCCcccchhc---------cccCCCCCcEEEeeCCCCCchhhhhhh--hcCCCccEEeccCC
Q 006752 221 WTGVTKLPNISSLECLNLSNCTIDSILE---------GNENKAPLAKISLAGTTFINEREAFLY--IETSLLSFLDVSNS 289 (632)
Q Consensus 221 ~n~l~~l~~l~~L~~L~L~~~~l~~~~~---------~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~~L~~L~ls~n 289 (632)
...+++.|++++|.+..++. .++.+++|++|++++|.+.+..+.... ....+|+.|++++|
T Consensus 178 --------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 178 --------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp --------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred --------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 11345555555555554332 234567788888888877764433221 22477888888877
Q ss_pred CCCch-hhhhcCCCCCeeeccCCCCCchHHHHHHhc-CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHH
Q 006752 290 SLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACV-GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 367 (632)
Q Consensus 290 ~l~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 367 (632)
...+. .....++.+. ...+... .++|++|++++|++++..+..+ +.+++|++|++++|++++..
T Consensus 250 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPD-------------NFTFKGLEASGVKTCDLSKSKIFALLKSVF-SHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTTSCCTTCCSSCCCC-------------TTTTGGGTTSCCCEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEEC
T ss_pred cccccccchhhhccCc-------------ccccccccccCceEEEecCccccccchhhc-ccCCCCCEEECCCCcccccC
Confidence 65443 1111111111 1111111 1689999999999988777665 67899999999999999888
Q ss_pred HHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhh
Q 006752 368 ISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQ 447 (632)
Q Consensus 368 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~ 447 (632)
+..+..+++|++|++++|.+++..|. .+.
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------------------------------------~~~ 344 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSR---------------------------------------------------MFE 344 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGG---------------------------------------------------GGT
T ss_pred hhHhcCcccCCEEECCCCccCCcChh---------------------------------------------------Hhc
Confidence 88899999999999999999877555 567
Q ss_pred cCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCC
Q 006752 448 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 515 (632)
Q Consensus 448 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 515 (632)
++++|++|+|++|++++..|.+|..+++|++|+|++|++++..+..+..+++|++|++++|++++..|
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 88999999999999999889999999999999999999999888888999999999999999997644
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.8e-36 Score=321.04 Aligned_cols=342 Identities=23% Similarity=0.315 Sum_probs=224.9
Q ss_pred CCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEE
Q 006752 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169 (632)
Q Consensus 90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 169 (632)
++|++|+++++. +... ..+..+++|++|++++| .+++..+ +.++++|++|++++|.+++..+ +..+++|++|
T Consensus 46 ~~l~~L~l~~~~-i~~l--~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLG-IKSI--DGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSC-CCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred ccccEEecCCCC-CccC--cchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 455555555554 4332 13455566666666665 3444322 5556666666666666555433 5566666666
Q ss_pred EcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCC---CCCCCCCCCEEECCCCcccch
Q 006752 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT---KLPNISSLECLNLSNCTIDSI 246 (632)
Q Consensus 170 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~l~~l~~L~~L~L~~~~l~~~ 246 (632)
++++|.+.+..+ +..+++|++|++++|.+.+.. .+..+++|++|++++ .+. .+..+++|++|++++|.+..+
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEEE-SCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecCC-cccCchhhccCCCCCEEECcCCcCCCC
Confidence 666666655422 556666666666666655432 355666666666642 222 244566666666766666655
Q ss_pred hccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCC
Q 006752 247 LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA 326 (632)
Q Consensus 247 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 326 (632)
+ .+..+++|++|++++|.+.+.++ +..+++|++|++++|.++..+.+..+++|++|++++|.+.+..+ +..+ +
T Consensus 193 ~-~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l-~ 265 (466)
T 1o6v_A 193 S-VLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGL-T 265 (466)
T ss_dssp G-GGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTC-T
T ss_pred h-hhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcC-C
Confidence 3 35567777777777777776554 34577788888888877777777777888888888887776554 4444 7
Q ss_pred CCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhh
Q 006752 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFM 406 (632)
Q Consensus 327 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~ 406 (632)
+|++|++++|++++..+ ...+++|++|++++|++++..+ +..+++|+.|++++|++++..|
T Consensus 266 ~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-------------- 326 (466)
T 1o6v_A 266 KLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-------------- 326 (466)
T ss_dssp TCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--------------
T ss_pred CCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--------------
Confidence 78888888887776554 2567788888888887776544 6777888888888887776522
Q ss_pred hhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccC
Q 006752 407 IVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 486 (632)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 486 (632)
+..+++|++|++++|.+++. ..+..+++|+.|++++|++
T Consensus 327 ---------------------------------------~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 327 ---------------------------------------VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp ---------------------------------------GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred ---------------------------------------hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence 34567788888888888774 4577788888888888888
Q ss_pred CCcchhhhccCCCCcEEeecCceeccC
Q 006752 487 TDVSLHQLSSLSKLTNLSIRDAVLTNS 513 (632)
Q Consensus 487 ~~~~~~~~~~l~~L~~L~ls~N~l~~~ 513 (632)
++..| +..+++|+.|++++|++++.
T Consensus 366 ~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 366 SDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred Cccch--hhcCCCCCEEeccCCcccCC
Confidence 87665 77788888888888888774
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.1e-36 Score=317.87 Aligned_cols=343 Identities=20% Similarity=0.296 Sum_probs=292.9
Q ss_pred CCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccE
Q 006752 113 GMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY 192 (632)
Q Consensus 113 ~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~ 192 (632)
.++++++|+++++ .+... +.+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ ++.+++|++
T Consensus 44 ~l~~l~~L~l~~~-~i~~l--~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSS-CCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCC-CCccC--cchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 4568999999998 55543 357789999999999999988654 8999999999999999988654 899999999
Q ss_pred EEecCCCCCchhhHhhcCCCCCcEEEccCCCCCC---CCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCch
Q 006752 193 LDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK---LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE 269 (632)
Q Consensus 193 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~---l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 269 (632)
|++++|.+++..+ +..+++|++|++++|.+.. +..+++|++|+++ +.+..++. +..+++|++|++++|.+.++
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCC
Confidence 9999999987654 8899999999999997765 4578999999996 45555544 77899999999999998876
Q ss_pred hhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhc
Q 006752 270 REAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGH 349 (632)
Q Consensus 270 ~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 349 (632)
+. +..+++|++|++++|.+.+...+..+++|++|++++|.+++.. .+..+ ++|++|++++|.+++..+ ...
T Consensus 193 ~~---l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~l-~~L~~L~l~~n~l~~~~~---~~~ 263 (466)
T 1o6v_A 193 SV---LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASL-TNLTDLDLANNQISNLAP---LSG 263 (466)
T ss_dssp GG---GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGGC-TTCSEEECCSSCCCCCGG---GTT
T ss_pred hh---hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch--hhhcC-CCCCEEECCCCccccchh---hhc
Confidence 53 5578999999999999988877888999999999999988642 34555 899999999999988765 367
Q ss_pred CCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccch
Q 006752 350 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGF 429 (632)
Q Consensus 350 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (632)
+++|++|++++|.+++..+ +..+++|+.|++++|++.+..
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~-------------------------------------- 303 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS-------------------------------------- 303 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--------------------------------------
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch--------------------------------------
Confidence 8999999999999987655 788999999999999988752
Q ss_pred hhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCce
Q 006752 430 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 509 (632)
Q Consensus 430 l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~ 509 (632)
.+..+++|++|++++|++++..| +..+++|+.|++++|++++. ..+..+++|++|++++|+
T Consensus 304 ---------------~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 304 ---------------PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp ---------------GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred ---------------hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCc
Confidence 25678899999999999999765 78899999999999999996 478999999999999999
Q ss_pred eccCCCCCCCCCCCcceEecCCCcccC
Q 006752 510 LTNSGLGSFKPPRSLKLLDLHGGWLLT 536 (632)
Q Consensus 510 l~~~~~~~l~~~~~L~~L~l~~N~l~~ 536 (632)
+++..| +..+++|+.|++++|++..
T Consensus 365 l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 365 ISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred cCccch--hhcCCCCCEEeccCCcccC
Confidence 999876 8889999999999999844
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.7e-37 Score=322.83 Aligned_cols=403 Identities=16% Similarity=0.099 Sum_probs=262.4
Q ss_pred CcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCc-------------CEEeccCCCCCChh
Q 006752 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCL-------------KELDLSRCVKVTDA 131 (632)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L-------------~~L~L~~~~~l~~~ 131 (632)
+++++|++++|. + +.++..++++++|++|++++|. +.+..+..++++++| ++|++++| .+++.
T Consensus 11 ~~L~~L~l~~n~-l-~~iP~~i~~L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~l 86 (454)
T 1jl5_A 11 TFLQEPLRHSSN-L-TEMPVEAENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSL 86 (454)
T ss_dssp -------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCC
T ss_pred ccchhhhcccCc-h-hhCChhHhcccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccC
Confidence 579999999995 4 6788899999999999999988 776677777777764 99999998 56552
Q ss_pred hHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCC-CCccEEEecCCCCCchhhHhhcC
Q 006752 132 GMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVL-TKLEYLDLWGSQVSNRGAAVLKM 210 (632)
Q Consensus 132 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~ 210 (632)
.. -.++|++|++++|.+++ .|. ..++|++|++++|.+.+. ... ++|++|++++|++++ .| .++.
T Consensus 87 p~----~~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~l-----~~~~~~L~~L~L~~n~l~~-lp-~~~~ 151 (454)
T 1jl5_A 87 PE----LPPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKAL-----SDLPPLLEYLGVSNNQLEK-LP-ELQN 151 (454)
T ss_dssp CS----CCTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-----CSCCTTCCEEECCSSCCSS-CC-CCTT
T ss_pred CC----CcCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCcc-----cCCCCCCCEEECcCCCCCC-Cc-ccCC
Confidence 21 24789999999999987 332 357899999999998763 222 689999999999987 55 5899
Q ss_pred CCCCcEEEccCCCCCCCCC-CCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCC
Q 006752 211 FPRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS 289 (632)
Q Consensus 211 l~~L~~L~l~~n~l~~l~~-l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n 289 (632)
+++|++|++++|.+++++. .++|++|++++|.++++| .+..+++|++|++++|.+.+++.. .++|++|++++|
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n 225 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNN 225 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSS
T ss_pred CCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCC
Confidence 9999999999999998774 468999999999999887 578999999999999999876542 368999999999
Q ss_pred CCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHH
Q 006752 290 SLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 369 (632)
Q Consensus 290 ~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 369 (632)
.++.++.+..+++|++|++++|++++.. . ..++|++|++++|++++.. ..+++|++|++++|++++..
T Consensus 226 ~l~~lp~~~~l~~L~~L~l~~N~l~~l~-~----~~~~L~~L~l~~N~l~~l~-----~~~~~L~~L~ls~N~l~~l~-- 293 (454)
T 1jl5_A 226 ILEELPELQNLPFLTTIYADNNLLKTLP-D----LPPSLEALNVRDNYLTDLP-----ELPQSLTFLDVSENIFSGLS-- 293 (454)
T ss_dssp CCSSCCCCTTCTTCCEEECCSSCCSSCC-S----CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSEES--
T ss_pred cCCcccccCCCCCCCEEECCCCcCCccc-c----cccccCEEECCCCcccccC-----cccCcCCEEECcCCccCccc--
Confidence 9987777888999999999999988632 1 2278999999999888632 23578999999999887621
Q ss_pred HHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcC
Q 006752 370 YMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNL 449 (632)
Q Consensus 370 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l 449 (632)
...++|++|++++|++++. +.. .
T Consensus 294 --~~~~~L~~L~l~~N~l~~i-~~~------------------------------------------------------~ 316 (454)
T 1jl5_A 294 --ELPPNLYYLNASSNEIRSL-CDL------------------------------------------------------P 316 (454)
T ss_dssp --CCCTTCCEEECCSSCCSEE-CCC------------------------------------------------------C
T ss_pred --CcCCcCCEEECcCCcCCcc-cCC------------------------------------------------------c
Confidence 1236889999999988763 220 1
Q ss_pred CcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc--CCCCCCCCCCCcceE
Q 006752 450 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN--SGLGSFKPPRSLKLL 527 (632)
Q Consensus 450 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~--~~~~~l~~~~~L~~L 527 (632)
++|++|++++|++++ +|.. +++|++|++++|++++ +|. .+++|++|++++|++++ .+|..+..+
T Consensus 317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L------ 382 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL------ 382 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE------
T ss_pred CcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh------
Confidence 478899999998887 4543 5888999999998887 444 47889999999999888 556555432
Q ss_pred ecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCC--CCCCcchhhhhhhcccCCCC
Q 006752 528 DLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNG--PSPSRTSLRASLVKQKQDPM 589 (632)
Q Consensus 528 ~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g--~ip~~~~~~~~~~n~~~~~~ 589 (632)
+.|.+ .+..+. . . ...+..++++|+++| .+|.+++.+....+.+.+.+
T Consensus 383 --~~n~~-~~~i~~-~---~-------~~L~~L~ls~N~l~~~~~iP~sl~~L~~~~~~~~~~~ 432 (454)
T 1jl5_A 383 --RMNSH-LAEVPE-L---P-------QNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPY 432 (454)
T ss_dssp --ECCC----------------------------------------------------------
T ss_pred --hhccc-cccccc-c---c-------CcCCEEECCCCcCCccccchhhHhheeCcCcccCCcc
Confidence 22332 111111 0 0 123445555666665 66666655554444445433
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.4e-36 Score=334.01 Aligned_cols=406 Identities=17% Similarity=0.163 Sum_probs=252.8
Q ss_pred CCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEE
Q 006752 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169 (632)
Q Consensus 90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 169 (632)
+++++|+|++|. |+...+.+|.++++|++|+|++| .++...+.+|.++++|++|+|++|++++..+..|.++++|++|
T Consensus 52 ~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 379999999998 99888889999999999999999 7888888889999999999999999998878889999999999
Q ss_pred EcCCCCCChHHHHhccCCCCccEEEecCCCCCch-hhHhhcCCCCCcEEEccCCCCCCCC--------CC-CCCCEEECC
Q 006752 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR-GAAVLKMFPRLSFLNLAWTGVTKLP--------NI-SSLECLNLS 239 (632)
Q Consensus 170 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~l~--------~l-~~L~~L~L~ 239 (632)
++++|.+++..+..|+++++|++|++++|.+++. .|..+..+++|++|++++|.++++. ++ .....++++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 9999999987777899999999999999999764 5778899999999999999998643 22 234578999
Q ss_pred CCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEe----------------------------------
Q 006752 240 NCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD---------------------------------- 285 (632)
Q Consensus 240 ~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~---------------------------------- 285 (632)
.|.+..++...+....++.+++.+|..........+..+..++...
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 9999888877777777788888877554322222233333333322
Q ss_pred -----------------------ccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchh
Q 006752 286 -----------------------VSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 342 (632)
Q Consensus 286 -----------------------ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 342 (632)
+.++.+.....+.....++.|++.+|.+.+.... . ...|+.+++..|......
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~-l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---K-LKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC---B-CTTCCEEEEESCCSCCBC
T ss_pred hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc---c-chhhhhcccccccCCCCc
Confidence 2222222222233333444444444433321110 0 134444444444333221
Q ss_pred HHHHHhcCCCCcEEEccCCCCCh--HHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccc
Q 006752 343 VGILAGHLPNLEILSLSGTQIDD--YAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVI 420 (632)
Q Consensus 343 ~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (632)
.. ..+++|+.|++++|.+.. ..+..+..+.+|+.++++.|.+....+. +..
T Consensus 366 ~~---~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-~~~----------------------- 418 (635)
T 4g8a_A 366 SE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-FLG----------------------- 418 (635)
T ss_dssp CC---CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC-CTT-----------------------
T ss_pred cc---ccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc-ccc-----------------------
Confidence 11 235556666666555432 2233344555566666655555443221 111
Q ss_pred cccccccchhhhccccccccc---chHHhhcCCcccccccCccCCCCCccccccCcccccccccccccC-CCcchhhhcc
Q 006752 421 FPSSVLAGFIQQVGAETDLVL---SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL-TDVSLHQLSS 496 (632)
Q Consensus 421 ~~~~~~~~~l~~l~~~~~~l~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~ 496 (632)
...++.+++..+... ....+.++++++.+++++|.+.+..+..+..+++|+.|++++|.+ .+..|..|..
T Consensus 419 ------l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~ 492 (635)
T 4g8a_A 419 ------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 492 (635)
T ss_dssp ------CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred ------cccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh
Confidence 112223333322221 112344555555555555555555555555555555555555542 2334445555
Q ss_pred CCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752 497 LSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 534 (632)
Q Consensus 497 l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l 534 (632)
+++|++|++++|++++..|..|.++++|++|++++|++
T Consensus 493 l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l 530 (635)
T 4g8a_A 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence 55555555555555555555555555555555555554
No 29
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.1e-35 Score=316.74 Aligned_cols=401 Identities=21% Similarity=0.240 Sum_probs=262.8
Q ss_pred CcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchh----HHhhhCCCCcCEEeccCCCCCChhhHhhhc-CC
Q 006752 65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSA----LWALTGMTCLKELDLSRCVKVTDAGMKHLL-SI 139 (632)
Q Consensus 65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~----~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~-~l 139 (632)
+++++|||+++...+..+...+..+++|++|++++|. +++.. +..+..+++|++|++++| .+++..+..+. .+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHH
Confidence 4688888888854344455557888888888888888 76543 345667788888888888 56665555444 34
Q ss_pred C----CccEEEccCCCCCH----hHHHHhcCCCCCCEEEcCCCCCChHHHHhcc-----CCCCccEEEecCCCCCchhhH
Q 006752 140 S----TLEKLWLSETGLTA----DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ-----VLTKLEYLDLWGSQVSNRGAA 206 (632)
Q Consensus 140 ~----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~~~ 206 (632)
+ +|++|++++|.++. ..+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 4 58888888887774 3466677777777777777777665444432 244566666666666553322
Q ss_pred hhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhh----hhcCCCcc
Q 006752 207 VLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFL----YIETSLLS 282 (632)
Q Consensus 207 ~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~~~~L~ 282 (632)
.+ +..+..+++|++|++++|.+.+...... ....++|+
T Consensus 161 ~l--------------------------------------~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 161 PL--------------------------------------ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202 (461)
T ss_dssp HH--------------------------------------HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred HH--------------------------------------HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence 11 1112222333333333333322111100 01234666
Q ss_pred EEeccCCCCCch------hhhhcCCCCCeeeccCCCCCchHHHHHHh----cCCCCcEEEccCCcCcchh----HHHHHh
Q 006752 283 FLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVAC----VGANLRNLNLSNTRFSSAG----VGILAG 348 (632)
Q Consensus 283 ~L~ls~n~l~~~------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~----~~~~L~~L~l~~n~l~~~~----~~~~~~ 348 (632)
+|++++|.++.. ..+..+++|++|++++|.+++.....+.. .+++|++|++++|.+++.. +..+ .
T Consensus 203 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~ 281 (461)
T 1z7x_W 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL-R 281 (461)
T ss_dssp EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH-H
T ss_pred EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH-h
Confidence 666666666542 45567788888888888887765544432 2378888999888888754 3333 4
Q ss_pred cCCCCcEEEccCCCCChHHHHHHhc-----CCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccccccc
Q 006752 349 HLPNLEILSLSGTQIDDYAISYMSM-----MPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPS 423 (632)
Q Consensus 349 ~~~~L~~L~L~~n~l~~~~~~~l~~-----~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (632)
.+++|++|++++|.+++..+..+.. .++|++|++++|.+++.....+.
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~--------------------------- 334 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS--------------------------- 334 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH---------------------------
T ss_pred hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH---------------------------
Confidence 5888999999999888776666653 26899999999988765222110
Q ss_pred ccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccC-----cccccccccccccCCC----cchhhh
Q 006752 424 SVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST-----FKELIHLSLRNASLTD----VSLHQL 494 (632)
Q Consensus 424 ~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~Ls~n~l~~----~~~~~~ 494 (632)
..+..+++|++|++++|.+++..+..+.. .++|++|++++|++++ .+|..+
T Consensus 335 --------------------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 394 (461)
T 1z7x_W 335 --------------------SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394 (461)
T ss_dssp --------------------HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred --------------------HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH
Confidence 25677889999999999888766655543 5789999999999986 678888
Q ss_pred ccCCCCcEEeecCceeccCCCCCCC-----CCCCcceEecCCCccc--ChHHHHHHHHHcCCeeee
Q 006752 495 SSLSKLTNLSIRDAVLTNSGLGSFK-----PPRSLKLLDLHGGWLL--TEDAILQFCKMHPRIEVW 553 (632)
Q Consensus 495 ~~l~~L~~L~ls~N~l~~~~~~~l~-----~~~~L~~L~l~~N~l~--~~~~~~~~~~~~~~~~~~ 553 (632)
..+++|++|++++|++++.....+. ...+|+.|++.++.+. ....+..+.+..|.+++.
T Consensus 395 ~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 395 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp HHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 8899999999999998875322222 1246777777777652 334566677778887654
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.8e-36 Score=319.46 Aligned_cols=406 Identities=14% Similarity=0.118 Sum_probs=234.5
Q ss_pred CCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCE
Q 006752 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSV 168 (632)
Q Consensus 89 ~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 168 (632)
.++|++|++++|. + +..|..++++++|++|++++| .+.+..+..++++++|+.+++.+|. ..++++
T Consensus 10 ~~~L~~L~l~~n~-l-~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~~ 75 (454)
T 1jl5_A 10 NTFLQEPLRHSSN-L-TEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCL-----------DRQAHE 75 (454)
T ss_dssp --------------------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCSE
T ss_pred cccchhhhcccCc-h-hhCChhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhh-----------ccCCCE
Confidence 4678888888877 6 456667788888888888877 4555566666677666655555442 145788
Q ss_pred EEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCC-CCCCEEECCCCcccchh
Q 006752 169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNI-SSLECLNLSNCTIDSIL 247 (632)
Q Consensus 169 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l-~~L~~L~L~~~~l~~~~ 247 (632)
|++++|.+++. |. -.++|++|++++|.+++ .|. ..++|++|++++|.+++++.. ++|++|++++|.++++|
T Consensus 76 L~l~~~~l~~l-p~---~~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp 147 (454)
T 1jl5_A 76 LELNNLGLSSL-PE---LPPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP 147 (454)
T ss_dssp EECTTSCCSCC-CS---CCTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC
T ss_pred EEecCCccccC-CC---CcCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc
Confidence 88888888763 22 24688899999888886 343 347889999999988888766 58999999999998887
Q ss_pred ccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCC
Q 006752 248 EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 327 (632)
Q Consensus 248 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 327 (632)
.+..+++|++|++++|.+.+++.. ..+|++|++++|.+++++.+..+++|++|++++|.+++.. ...++
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~-----~~~~~ 216 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLP-----DLPLS 216 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC-----CCCTT
T ss_pred -ccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCC-----CCcCc
Confidence 578899999999999998876543 3589999999999988877888999999999999887522 12268
Q ss_pred CcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhh
Q 006752 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMI 407 (632)
Q Consensus 328 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~ 407 (632)
|++|++++|+++.. +. + +.+++|++|++++|++++.. . ..++|++|++++|++++. |..
T Consensus 217 L~~L~l~~n~l~~l-p~-~-~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~l-~~~------------- 275 (454)
T 1jl5_A 217 LESIVAGNNILEEL-PE-L-QNLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTDL-PEL------------- 275 (454)
T ss_dssp CCEEECCSSCCSSC-CC-C-TTCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSCC-CCC-------------
T ss_pred ccEEECcCCcCCcc-cc-c-CCCCCCCEEECCCCcCCccc-c---cccccCEEECCCCccccc-Ccc-------------
Confidence 99999999988843 32 3 67889999999999887632 1 357899999999998873 441
Q ss_pred hhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCC
Q 006752 408 VYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 487 (632)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 487 (632)
.++|++|++++|.+++. +.. .++|++|++++|+++
T Consensus 276 -----------------------------------------~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 276 -----------------------------------------PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIR 310 (454)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCS
T ss_pred -----------------------------------------cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCC
Confidence 13555666666655551 111 145556666666555
Q ss_pred CcchhhhccC-CCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCC
Q 006752 488 DVSLHQLSSL-SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIG 566 (632)
Q Consensus 488 ~~~~~~~~~l-~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 566 (632)
+.. .+ ++|++|++++|++++ +|.. +++|++|++++|.+.. .|. .....+..++++|+
T Consensus 311 ~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~----------lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 311 SLC-----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE----------VPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp EEC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC----------CCC---CCTTCCEEECCSSC
T ss_pred ccc-----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc----------ccc---hhhhccEEECCCCC
Confidence 421 12 355666666665555 2332 3455666666665422 111 01223444555566
Q ss_pred CCC--CCCCcchhhhhhhcccCCCCCCCccchhcccccCHHHHHHhhcccccc--cCCCCCccc
Q 006752 567 SNG--PSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL--ARPDDSSTQ 626 (632)
Q Consensus 567 ~~g--~ip~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~l~g--~ip~~~~~~ 626 (632)
++| .+|..++.+. .|++.|.+|. .. ..++.||+++|+++| .||.++...
T Consensus 369 l~~l~~ip~~l~~L~--~n~~~~~i~~---~~------~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 369 LREFPDIPESVEDLR--MNSHLAEVPE---LP------QNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp CSSCCCCCTTCCEEE--CCC--------------------------------------------
T ss_pred CCcCCCChHHHHhhh--hccccccccc---cc------CcCCEEECCCCcCCccccchhhHhhe
Confidence 655 5666655543 2344442221 11 256677777777777 777766443
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.3e-37 Score=335.36 Aligned_cols=452 Identities=14% Similarity=0.082 Sum_probs=306.6
Q ss_pred cCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCcc
Q 006752 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (632)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 143 (632)
|...+++|+++++ ++. ++..+ .++|++|++++|. ++...+.+|.++++|++|++++| .++...+..|.++++|+
T Consensus 30 ~~~~~~l~ls~~~-L~~-ip~~~--~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 30 NELESMVDYSNRN-LTH-VPKDL--PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp ---CCEEECTTSC-CCS-CCTTS--CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCC
T ss_pred cCCCcEEEcCCCC-Ccc-CCCCC--CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCC
Confidence 3456899999995 443 33323 3799999999998 88888889999999999999999 78888788899999999
Q ss_pred EEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChH-HHHhccCCCCccEEEecCCCCCchhhHhhcCCCCC--cEEEcc
Q 006752 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL--SFLNLA 220 (632)
Q Consensus 144 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~ 220 (632)
+|++++|.++. +|.. .+++|++|++++|.+.+. .|..|+++++|++|++++|.+++.. +..+++| ++|+++
T Consensus 104 ~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 104 YLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLD 177 (562)
T ss_dssp EEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEE
T ss_pred EEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEee
Confidence 99999999985 3433 799999999999999874 4578999999999999999998643 4445555 999999
Q ss_pred CCCC--CCCC--CCCCCC----EEECCCCcccc-hhc-cccCCCCCcEEEeeCCCCC--chhh-hhhhhcCCCccEEecc
Q 006752 221 WTGV--TKLP--NISSLE----CLNLSNCTIDS-ILE-GNENKAPLAKISLAGTTFI--NERE-AFLYIETSLLSFLDVS 287 (632)
Q Consensus 221 ~n~l--~~l~--~l~~L~----~L~L~~~~l~~-~~~-~~~~~~~L~~L~l~~n~~~--~~~~-~~~~~~~~~L~~L~ls 287 (632)
+|.+ +... .+..+. .+++++|.+.. ++. .+..+++|+.+++++|... ..+. ...+..++.|+.++++
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 9988 4321 222222 45677777663 322 3347889999999998531 1111 1235578899999998
Q ss_pred CCCCCch-----hhhhcCCCCCeeeccCCCCCchHHHHH-----HhcCCCCcEEEccCCcCcchhHHHHHh--cCCCCcE
Q 006752 288 NSSLSRF-----CFLTQMKALEHLDLSSSMIGDDSVEMV-----ACVGANLRNLNLSNTRFSSAGVGILAG--HLPNLEI 355 (632)
Q Consensus 288 ~n~l~~~-----~~l~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~ 355 (632)
++.+.+. ......++|++|++++|.+++..|..+ ..+ +.|+.+++..+.+ ......+.. ..++|++
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L-~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL-KSLMIEHVKNQVF-LFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSC-CEEEEEEEEECCC-SSCHHHHHHHHHTCCCSE
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccc-hheehhhccccee-ecChhhhhhhhccCcceE
Confidence 8877654 223344699999999998886555443 222 3333444444443 111111111 1245666
Q ss_pred EEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccc
Q 006752 356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGA 435 (632)
Q Consensus 356 L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 435 (632)
|++++|.+.... ....+++|++|++++|.+++..|..+.. ...++.|++
T Consensus 336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------------l~~L~~L~L 384 (562)
T 3a79_B 336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCST-----------------------------LKRLQTLIL 384 (562)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCS-----------------------------CSSCCEEEC
T ss_pred EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcc-----------------------------cCCCCEEEC
Confidence 666666554321 0145566666666666666654543321 123445555
Q ss_pred ccccccch----HHhhcCCcccccccCccCCCCCcc-ccccCcccccccccccccCCCcchhhhccCCCCcEEeecCcee
Q 006752 436 ETDLVLSL----TALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 510 (632)
Q Consensus 436 ~~~~l~~~----~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l 510 (632)
++|.+..+ ..+.++++|++|++++|.+++.+| ..+..+++|++|++++|++++..|..+. ++|++|++++|++
T Consensus 385 ~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l 462 (562)
T 3a79_B 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI 462 (562)
T ss_dssp CSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCC
T ss_pred CCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcC
Confidence 55555432 247788999999999999998444 4577889999999999999887666554 7899999999999
Q ss_pred ccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCC
Q 006752 511 TNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSP 572 (632)
Q Consensus 511 ~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip 572 (632)
+. +|..+..+++|++|++++|++.. .+.......+ ..+..++++|.+.+..|
T Consensus 463 ~~-ip~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~-------~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 463 MS-IPKDVTHLQALQELNVASNQLKS--VPDGVFDRLT-------SLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CC-CCTTTTSSCCCSEEECCSSCCCC--CCTTSTTTCT-------TCCCEECCSCCBCCCHH
T ss_pred cc-cChhhcCCCCCCEEECCCCCCCC--CCHHHHhcCC-------CCCEEEecCCCcCCCcc
Confidence 86 46666688999999999999743 1111111122 23456677887777655
No 32
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=2.8e-35 Score=323.75 Aligned_cols=416 Identities=15% Similarity=0.103 Sum_probs=275.3
Q ss_pred cCcccEEeccCCCCCC--------------HHHHHHhccCCCccEEEcCCCCCCCchhHHhhhC-CCC-cCEEeccCCCC
Q 006752 64 KHNAEAIELRGENSVD--------------AEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTC-LKELDLSRCVK 127 (632)
Q Consensus 64 ~~~l~~L~Ls~~~~~~--------------~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~-l~~-L~~L~L~~~~~ 127 (632)
.+++++|+|+++.... ..+...+..+++|++|+|++|. +++..+..+.. ++. |++|++++|..
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCC
Confidence 5679999998764221 1234445589999999999997 88888888875 455 99999999965
Q ss_pred CChhhHhhhc-CCCCccEEEccCCCCCHh----HHHHhcCCCCCCEEEcCCCCCC----hHHHHhccCCCCccEEEecCC
Q 006752 128 VTDAGMKHLL-SISTLEKLWLSETGLTAD----GIALLSSLQNLSVLDLGGLPVT----DLVLRSLQVLTKLEYLDLWGS 198 (632)
Q Consensus 128 l~~~~~~~l~-~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~----~~~~~~l~~l~~L~~L~L~~n 198 (632)
++......+. ++++|++|+|++|.+++. .+..+..+++|++|++++|.+. +..+..+.++++|++|++++|
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 5555554444 799999999999987654 4455668899999999999987 455666778999999999999
Q ss_pred CCCchhhHhhcCCCCCcEEEccCCCC--------CCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchh
Q 006752 199 QVSNRGAAVLKMFPRLSFLNLAWTGV--------TKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 270 (632)
Q Consensus 199 ~l~~~~~~~l~~l~~L~~L~l~~n~l--------~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~ 270 (632)
.+.+ .+..+..+++|++|+++.... ..+..+++|+.|+++++....++..+..+++|++|++++|.+++..
T Consensus 231 ~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~ 309 (592)
T 3ogk_B 231 EILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED 309 (592)
T ss_dssp BGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred cHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH
Confidence 8876 567889999999999985321 2355677888888877666667766667777888888877765443
Q ss_pred hhhhhhcCCCccEEeccCCCCCch---hhhhcCCCCCeeecc-----------CCCCCchHHHHHHhcCCCCcEEEccCC
Q 006752 271 EAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLS-----------SSMIGDDSVEMVACVGANLRNLNLSNT 336 (632)
Q Consensus 271 ~~~~~~~~~~L~~L~ls~n~l~~~---~~l~~~~~L~~L~l~-----------~n~l~~~~~~~~~~~~~~L~~L~l~~n 336 (632)
....+..+++|++|+++ +.+... .....+++|++|+++ .+.+++.....+...+++|++|+++.+
T Consensus 310 ~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388 (592)
T ss_dssp HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred HHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence 33334566777777776 333222 233456677777776 345665555554444467777777666
Q ss_pred cCcchhHHHHHhcCCCCcEEEcc----CCCCCh-----HHHHHHhcCCCccEEEccCCc--cccccCCCccchhhhhhhh
Q 006752 337 RFSSAGVGILAGHLPNLEILSLS----GTQIDD-----YAISYMSMMPSLKFIDISNTD--IKGMYPSGQMNVFFSAYCF 405 (632)
Q Consensus 337 ~l~~~~~~~~~~~~~~L~~L~L~----~n~l~~-----~~~~~l~~~~~L~~L~Ls~n~--i~~~~~~~~~~~~~~~~~~ 405 (632)
.+++..+..+...+++|++|+++ .|.+++ ..+..+..+++|++|++++|. +++..+.
T Consensus 389 ~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~------------ 456 (592)
T 3ogk_B 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS------------ 456 (592)
T ss_dssp CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH------------
T ss_pred CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH------------
Confidence 66666666654556777777774 455554 244445566777777776543 3332111
Q ss_pred hhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCc-cccccCcccccccccccc
Q 006752 406 MIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LFPLSTFKELIHLSLRNA 484 (632)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n 484 (632)
.....+++|++|++++|.+++.. +..+..+++|++|+|++|
T Consensus 457 --------------------------------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 457 --------------------------------------YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp --------------------------------------HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred --------------------------------------HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 01223566777777777766532 233355677777777777
Q ss_pred cCCCcc-hhhhccCCCCcEEeecCceeccCCCCCCC-CCCCcceEecCCC
Q 006752 485 SLTDVS-LHQLSSLSKLTNLSIRDAVLTNSGLGSFK-PPRSLKLLDLHGG 532 (632)
Q Consensus 485 ~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~~~~~l~-~~~~L~~L~l~~N 532 (632)
.+++.. +..+..+++|++|++++|+++......+. .++.+....+..+
T Consensus 499 ~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 499 CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 766543 33345667777777777776665444433 3455555554444
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.2e-35 Score=310.29 Aligned_cols=264 Identities=19% Similarity=0.181 Sum_probs=161.4
Q ss_pred hccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCC
Q 006752 86 LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQN 165 (632)
Q Consensus 86 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 165 (632)
++.+++|++|++++|. +++.+ .+..+++|++|++++| .+++. .++.+++|++|++++|.+++. .+..+++
T Consensus 38 ~~~l~~L~~L~Ls~n~-l~~~~--~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~ 107 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS-ITDMT--GIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTK 107 (457)
T ss_dssp HHHHTTCCEEECCSSC-CCCCT--TGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSCC---CCTTCTT
T ss_pred hhHcCCCCEEEccCCC-cccCh--hhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCCCcee---ecCCCCc
Confidence 3445566666666655 54431 4556666666666666 44443 155566666666666666553 1556666
Q ss_pred CCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCC-CCCC--CCCCCCCCEEECCCCc
Q 006752 166 LSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT-GVTK--LPNISSLECLNLSNCT 242 (632)
Q Consensus 166 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~--l~~l~~L~~L~L~~~~ 242 (632)
|++|++++|.+++. + ++.+++|++|++++|++++. .++.+++|++|++++| .+.. +..+++|++|++++|.
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc
Confidence 66666666666553 1 55666666666666666553 2555666666666666 2222 3456667777777777
Q ss_pred ccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHH
Q 006752 243 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 322 (632)
Q Consensus 243 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 322 (632)
++.++ +..+++|++|++++|.+++++ +..+++|++|++++|.+++++ +..+++|++|++++|.+++..+ .
T Consensus 182 l~~l~--l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~---~ 251 (457)
T 3bz5_A 182 ITELD--VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDV---S 251 (457)
T ss_dssp CCCCC--CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCC---T
T ss_pred cceec--cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCH---H
Confidence 66654 556677777777777776652 445677777777777777655 6667777777777777766432 2
Q ss_pred hcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCC
Q 006752 323 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPS 393 (632)
Q Consensus 323 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~ 393 (632)
.+ ++|+.|++++| +|+.|++++|.+.+..| ++.+++|+.|++++|...+.+|.
T Consensus 252 ~l-~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 252 TL-SKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp TC-TTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred HC-CCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence 22 66777776554 35566677776555544 45677777777777776666554
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.4e-34 Score=301.59 Aligned_cols=345 Identities=15% Similarity=0.158 Sum_probs=271.4
Q ss_pred cCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCcc
Q 006752 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (632)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 143 (632)
++++++|++++|. +.+. + .++.+++|++|++++|. +++. .++.+++|++|++++| .+++. .++++++|+
T Consensus 41 l~~L~~L~Ls~n~-l~~~-~-~l~~l~~L~~L~Ls~n~-l~~~---~~~~l~~L~~L~Ls~N-~l~~~---~~~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSS-ITDM-T-GIEKLTGLTKLICTSNN-ITTL---DLSQNTNLTYLACDSN-KLTNL---DVTPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSC-CCCC-T-TGGGCTTCSEEECCSSC-CSCC---CCTTCTTCSEEECCSS-CCSCC---CCTTCTTCC
T ss_pred cCCCCEEEccCCC-cccC-h-hhcccCCCCEEEccCCc-CCeE---ccccCCCCCEEECcCC-CCcee---ecCCCCcCC
Confidence 5789999999995 4432 2 68899999999999998 8775 2889999999999999 67764 278999999
Q ss_pred EEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCC
Q 006752 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 223 (632)
Q Consensus 144 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 223 (632)
+|++++|++++. + +..+++|++|++++|.+++. .++.+++|++|++++|...+.. .+..+++|++|++++|.
T Consensus 110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 999999999874 2 88999999999999999984 4889999999999999554444 47889999999999999
Q ss_pred CCCCC--CCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCC
Q 006752 224 VTKLP--NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMK 301 (632)
Q Consensus 224 l~~l~--~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~ 301 (632)
+++++ .+++|++|++++|.++.+ .+..+++|++|++++|++++++ +..+++|++|++++|.+++.+ +..++
T Consensus 182 l~~l~l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~-~~~l~ 254 (457)
T 3bz5_A 182 ITELDVSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELD-VSTLS 254 (457)
T ss_dssp CCCCCCTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-CTTCT
T ss_pred cceeccccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcC-HHHCC
Confidence 98755 789999999999999987 3778999999999999999975 558899999999999999874 55677
Q ss_pred CCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHH--------HHhc
Q 006752 302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS--------YMSM 373 (632)
Q Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~l~~ 373 (632)
+|+.|+++.| +|+.|++++|.+.+..+ .+.|++|+.|++++|...+.+|. .++.
T Consensus 255 ~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 255 KLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp TCCEEECTTC---------------CCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred CCCEEeccCC---------------CCCEEECCCCccCCccc---ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 7777776654 34455666665554443 14466666666666654333221 1234
Q ss_pred CCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCccc
Q 006752 374 MPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLE 453 (632)
Q Consensus 374 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~ 453 (632)
+++|++|++++|++++. + ++++++|+
T Consensus 317 ~~~L~~L~L~~N~l~~l-~-----------------------------------------------------l~~l~~L~ 342 (457)
T 3bz5_A 317 NPKLVYLYLNNTELTEL-D-----------------------------------------------------VSHNTKLK 342 (457)
T ss_dssp CTTCCEEECTTCCCSCC-C-----------------------------------------------------CTTCTTCS
T ss_pred cccCCEEECCCCccccc-c-----------------------------------------------------cccCCcCc
Confidence 46777777777777764 1 35677888
Q ss_pred ccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCC
Q 006752 454 RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK 519 (632)
Q Consensus 454 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~ 519 (632)
+|++++|++++ ++.|..|++++|.+.|. ..+..|+.+++++|+++|.+|..+.
T Consensus 343 ~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 343 SLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp EEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred EEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 88888888886 25677788888888875 3566788889999999988876654
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2e-33 Score=287.48 Aligned_cols=304 Identities=20% Similarity=0.299 Sum_probs=208.2
Q ss_pred CCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEE
Q 006752 138 SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL 217 (632)
Q Consensus 138 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 217 (632)
.+++|++|+++++.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 456777777777766543 236666777777777776665432 66667777777777666543 235555555555
Q ss_pred EccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhh
Q 006752 218 NLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFL 297 (632)
Q Consensus 218 ~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l 297 (632)
++++| .+..++. +..+++|++|++++|........ +..+++|++|++++|.+.....+
T Consensus 116 ~l~~n-------------------~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~ 173 (347)
T 4fmz_A 116 YLNED-------------------NISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPI 173 (347)
T ss_dssp ECTTS-------------------CCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGGG
T ss_pred ECcCC-------------------cccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchhh
Confidence 55555 4444433 44555555566555533332222 34566666666666666666556
Q ss_pred hcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCc
Q 006752 298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 377 (632)
Q Consensus 298 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L 377 (632)
..+++|++|++++|.+.+..+ +... ++|+.+++++|.+++..+ ...+++|++|++++|++++..+ +..+++|
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L 245 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDISP--LASL-TSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP--LANLSQL 245 (347)
T ss_dssp GGCTTCSEEECTTSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred ccCCCCCEEEccCCccccccc--ccCC-CccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc--hhcCCCC
Confidence 677777777777777765443 3444 777777777777776554 2567888888888888776554 7788888
Q ss_pred cEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCccccccc
Q 006752 378 KFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNL 457 (632)
Q Consensus 378 ~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~L 457 (632)
++|++++|.+++. + .+..+++|++|++
T Consensus 246 ~~L~l~~n~l~~~-~----------------------------------------------------~~~~l~~L~~L~l 272 (347)
T 4fmz_A 246 TWLEIGTNQISDI-N----------------------------------------------------AVKDLTKLKMLNV 272 (347)
T ss_dssp CEEECCSSCCCCC-G----------------------------------------------------GGTTCTTCCEEEC
T ss_pred CEEECCCCccCCC-h----------------------------------------------------hHhcCCCcCEEEc
Confidence 8888888887764 1 3567788888899
Q ss_pred CccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752 458 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 534 (632)
Q Consensus 458 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l 534 (632)
++|.+++. ..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..| +..+++|++|++++|++
T Consensus 273 ~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 273 GSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred cCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 88888874 457788889999999999888888888888999999999999888755 77788899999999886
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=308.54 Aligned_cols=308 Identities=20% Similarity=0.190 Sum_probs=216.1
Q ss_pred CCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC-----CCCCCCEEECC
Q 006752 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLS 239 (632)
Q Consensus 165 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~l~~L~~L~L~ 239 (632)
++++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++.++ ++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 4555555555555544445555555555555555555555555555555555555544444322 33445555555
Q ss_pred CCcccchh-ccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHH
Q 006752 240 NCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV 318 (632)
Q Consensus 240 ~~~l~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~ 318 (632)
+|.+..++ ..+..+++|++|++++|.+..+.+ ..+..+++|++|++++|.+++..+
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-----------------------RAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-----------------------TSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CCccccCChhHccccccCCEEECCCCccceeCh-----------------------hhccCCCCCCEEECCCCcCcccCh
Confidence 55554332 233344455555555544433222 345666777777777777777666
Q ss_pred HHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccch
Q 006752 319 EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNV 398 (632)
Q Consensus 319 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 398 (632)
..+..+ ++|+.|++++|.+.+..+..+ ..+++|++|++++|...+..+.......+|++|++++|++++. |.
T Consensus 170 ~~l~~l-~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~----- 241 (477)
T 2id5_A 170 EALSHL-HGLIVLRLRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV-PY----- 241 (477)
T ss_dssp HHHTTC-TTCCEEEEESCCCCEECTTCS-CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC-CH-----
T ss_pred hHhccc-CCCcEEeCCCCcCcEeChhhc-ccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc-CH-----
Confidence 666666 788888888887776655444 5678888888888876665555555566899999999988864 32
Q ss_pred hhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccc
Q 006752 399 FFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 478 (632)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 478 (632)
..+.++++|++|+|++|.+++..+..|..+++|+.
T Consensus 242 ---------------------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (477)
T 2id5_A 242 ---------------------------------------------LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276 (477)
T ss_dssp ---------------------------------------------HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred ---------------------------------------------HHhcCccccCeeECCCCcCCccChhhccccccCCE
Confidence 25788899999999999999988888999999999
Q ss_pred cccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcC
Q 006752 479 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 548 (632)
Q Consensus 479 L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~ 548 (632)
|+|++|++++..|..|..+++|+.|++++|++++..+..|..+++|++|++++|++.|+|...++.++..
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~ 346 (477)
T 2id5_A 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRW 346 (477)
T ss_dssp EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTT
T ss_pred EECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhh
Confidence 9999999999889999999999999999999999888888999999999999999999998887766543
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.3e-33 Score=285.78 Aligned_cols=308 Identities=23% Similarity=0.290 Sum_probs=238.3
Q ss_pred hhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCC
Q 006752 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTK 189 (632)
Q Consensus 110 ~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~ 189 (632)
.+..+++|++|++++| .+... +.+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++
T Consensus 39 ~~~~l~~L~~L~l~~~-~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGE-KVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSS-CCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred cchhcccccEEEEeCC-ccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCc
Confidence 3457789999999998 55543 457889999999999999987554 89999999999999999874 46899999
Q ss_pred ccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCch
Q 006752 190 LEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE 269 (632)
Q Consensus 190 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 269 (632)
|++|++++|.+++..+ +..+++|++|++++|. ....+..+..+++|++|++++|.+.+.
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~-------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANH-------------------NLSDLSPLSNMTGLNYLTVTESKVKDV 170 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCT-------------------TCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCC-------------------CcccccchhhCCCCcEEEecCCCcCCc
Confidence 9999999999987544 6677776666666653 222222344556666666666665554
Q ss_pred hhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhc
Q 006752 270 REAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGH 349 (632)
Q Consensus 270 ~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 349 (632)
+. +..+++|++|++++|.+.....+..+++|+.+++++|.+++..+ +..+ ++|++|++++|++++..+ ...
T Consensus 171 ~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~-~~L~~L~l~~n~l~~~~~---~~~ 241 (347)
T 4fmz_A 171 TP---IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANM-TRLNSLKIGNNKITDLSP---LAN 241 (347)
T ss_dssp GG---GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG---GTT
T ss_pred hh---hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcC-CcCCEEEccCCccCCCcc---hhc
Confidence 43 34667777777777777776667777888888888887776554 4444 788888888888877655 367
Q ss_pred CCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccch
Q 006752 350 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGF 429 (632)
Q Consensus 350 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (632)
+++|++|++++|.+++. ..+..+++|++|++++|++++. +
T Consensus 242 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~------------------------------------- 281 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S------------------------------------- 281 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-------------------------------------
T ss_pred CCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-------------------------------------
Confidence 88999999999988764 3578889999999999988774 2
Q ss_pred hhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCce
Q 006752 430 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 509 (632)
Q Consensus 430 l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~ 509 (632)
.+..+++|++|++++|.+++..+..++.+++|++|++++|++++..| +..+++|++|++++|+
T Consensus 282 ---------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 282 ---------------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp ---------------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred ---------------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence 35678899999999999998888888999999999999999998766 8889999999999998
Q ss_pred ec
Q 006752 510 LT 511 (632)
Q Consensus 510 l~ 511 (632)
|+
T Consensus 345 i~ 346 (347)
T 4fmz_A 345 IK 346 (347)
T ss_dssp --
T ss_pred cc
Confidence 86
No 38
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=3.4e-34 Score=315.37 Aligned_cols=426 Identities=19% Similarity=0.214 Sum_probs=293.4
Q ss_pred cCcccEEeccCCCCCCH--------------HHHHHhccCCCccEEEcCCCCCCCchhHHhhh-CCCCcCEEeccCCCCC
Q 006752 64 KHNAEAIELRGENSVDA--------------EWMAYLGAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKV 128 (632)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~--------------~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~-~l~~L~~L~L~~~~~l 128 (632)
.+++++|+++++....+ .+...+..+++|++|++++|. +++..+..+. .+++|++|++++|..+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 35677777777642211 122334567777777777776 6666666665 5777777777777555
Q ss_pred ChhhHhhhc-CCCCccEEEccCCCCCHhHHHHhc----CCCCCCEEEcCCCC--CChHHHHh-ccCCCCccEEEecCCCC
Q 006752 129 TDAGMKHLL-SISTLEKLWLSETGLTADGIALLS----SLQNLSVLDLGGLP--VTDLVLRS-LQVLTKLEYLDLWGSQV 200 (632)
Q Consensus 129 ~~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~--i~~~~~~~-l~~l~~L~~L~L~~n~l 200 (632)
++.....+. ++++|++|++++|.+++..+..+. .+++|++|++++|. +....... +..+++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 554444444 677777777777765543332222 55677777777765 43332222 24567777777777632
Q ss_pred CchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEE-EeeCCCCCchhhhhhhhcCC
Q 006752 201 SNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKI-SLAGTTFINEREAFLYIETS 279 (632)
Q Consensus 201 ~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L-~l~~n~~~~~~~~~~~~~~~ 279 (632)
.+..+..+..+++|++|+++.+.. ++..+.+.+++..+.++++|+.+ .+.+.....++.. ...++
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~~~------------~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~--~~~~~ 289 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGYTA------------EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV--YSVCS 289 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBCCC------------CCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG--HHHHT
T ss_pred HHHHHHHHhcCCcceEcccccccC------------ccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH--HHhhC
Confidence 223555666666666666654321 13344556677777788888888 4444333233322 23678
Q ss_pred CccEEeccCCCCCch---hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEc---------cCCcCcchhHHHHH
Q 006752 280 LLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL---------SNTRFSSAGVGILA 347 (632)
Q Consensus 280 ~L~~L~ls~n~l~~~---~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l---------~~n~l~~~~~~~~~ 347 (632)
+|++|++++|.++.. ..+..+++|++|++++| +++.....+...+++|++|++ +.+.+++.....+.
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 999999999997654 34568899999999998 666666666665599999999 34578887777776
Q ss_pred hcCCCCcEEEccCCCCChHHHHHHh-cCCCccEEEcc--C----CccccccCCCccchhhhhhhhhhhhhceeccccccc
Q 006752 348 GHLPNLEILSLSGTQIDDYAISYMS-MMPSLKFIDIS--N----TDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVI 420 (632)
Q Consensus 348 ~~~~~L~~L~L~~n~l~~~~~~~l~-~~~~L~~L~Ls--~----n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (632)
..+++|++|.++++.+++..+..+. .+++|+.|+++ + +.+++. |..
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-~~~-------------------------- 421 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE-PLD-------------------------- 421 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC-CTH--------------------------
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC-chh--------------------------
Confidence 7799999999999999998887776 69999999999 3 334322 110
Q ss_pred cccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccC-cccccccccccccCCCcchhhh-ccCC
Q 006752 421 FPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST-FKELIHLSLRNASLTDVSLHQL-SSLS 498 (632)
Q Consensus 421 ~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~ 498 (632)
..++ ..+.++++|++|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..++
T Consensus 422 -----------------~~~~--~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 481 (594)
T 2p1m_B 422 -----------------IGFG--AIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481 (594)
T ss_dssp -----------------HHHH--HHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred -----------------hHHH--HHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence 0000 2367889999999988 788776676766 8999999999999988777666 6799
Q ss_pred CCcEEeecCceeccCCCC-CCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeee
Q 006752 499 KLTNLSIRDAVLTNSGLG-SFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW 553 (632)
Q Consensus 499 ~L~~L~ls~N~l~~~~~~-~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 553 (632)
+|++|++++|++++..+. ....+++|++|++++|++ +......+.+..|.+++.
T Consensus 482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~ 536 (594)
T 2p1m_B 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVE 536 (594)
T ss_dssp TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEE
T ss_pred CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEE
Confidence 999999999999765544 344579999999999997 778888888888888653
No 39
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=3.3e-33 Score=297.50 Aligned_cols=372 Identities=22% Similarity=0.231 Sum_probs=247.4
Q ss_pred CCccEEEcCCCCCCCchhHHh-hhCCCCcCEEeccCCCCCChhh----HhhhcCCCCccEEEccCCCCCHhHHHHhc-CC
Q 006752 90 RYLRSLNVADCRRVTSSALWA-LTGMTCLKELDLSRCVKVTDAG----MKHLLSISTLEKLWLSETGLTADGIALLS-SL 163 (632)
Q Consensus 90 ~~L~~L~L~~~~~i~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~----~~~l~~l~~L~~L~L~~n~i~~~~~~~~~-~l 163 (632)
++|++|++++++ +++..... +..+++|++|++++| .+++.. +..+..+++|++|++++|.+++..+..+. .+
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 345666666655 55444433 445666666666666 455432 22333455555555555555544333222 23
Q ss_pred C----CCCEEEcCCCCCCh----HHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCE
Q 006752 164 Q----NLSVLDLGGLPVTD----LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLEC 235 (632)
Q Consensus 164 ~----~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~ 235 (632)
+ +|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+..
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~------------------------- 135 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE------------------------- 135 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH-------------------------
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH-------------------------
Confidence 3 45555555555552 23444455555555555555544333332221
Q ss_pred EECCCCcccchhcccc-CCCCCcEEEeeCCCCCchhh---hhhhhcCCCccEEeccCCCCCch--hhhh-----cCCCCC
Q 006752 236 LNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINERE---AFLYIETSLLSFLDVSNSSLSRF--CFLT-----QMKALE 304 (632)
Q Consensus 236 L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~L~~L~ls~n~l~~~--~~l~-----~~~~L~ 304 (632)
.+. ..++|++|++++|.+++... ...+..+++|++|++++|.+... ..+. ..++|+
T Consensus 136 -------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 136 -------------GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202 (461)
T ss_dssp -------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred -------------HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence 111 23345555555555544221 12345689999999999998765 2222 366999
Q ss_pred eeeccCCCCCchH----HHHHHhcCCCCcEEEccCCcCcchhHHHHH----hcCCCCcEEEccCCCCChH----HHHHHh
Q 006752 305 HLDLSSSMIGDDS----VEMVACVGANLRNLNLSNTRFSSAGVGILA----GHLPNLEILSLSGTQIDDY----AISYMS 372 (632)
Q Consensus 305 ~L~l~~n~l~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~~----~~~~l~ 372 (632)
+|++++|.+++.. +..+... ++|++|++++|++++.....+. ..+++|++|++++|.+++. .+..+.
T Consensus 203 ~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 281 (461)
T 1z7x_W 203 ALKLESCGVTSDNCRDLCGIVASK-ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281 (461)
T ss_dssp EEECTTSCCBTTHHHHHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred EEEccCCCCcHHHHHHHHHHHHhC-CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence 9999999999854 5555555 9999999999999886654432 3589999999999999986 466677
Q ss_pred cCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcc
Q 006752 373 MMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHL 452 (632)
Q Consensus 373 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L 452 (632)
.+++|++|++++|.+.+..+..+.. ......++|
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~----------------------------------------------~l~~~~~~L 315 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCE----------------------------------------------TLLEPGCQL 315 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHH----------------------------------------------HHTSTTCCC
T ss_pred hCCCcceEECCCCCCchHHHHHHHH----------------------------------------------HhccCCccc
Confidence 8999999999999987653332111 011233699
Q ss_pred cccccCccCCCCC----ccccccCcccccccccccccCCCcchhhhcc-----CCCCcEEeecCceecc----CCCCCCC
Q 006752 453 ERLNLEQTQVSDA----TLFPLSTFKELIHLSLRNASLTDVSLHQLSS-----LSKLTNLSIRDAVLTN----SGLGSFK 519 (632)
Q Consensus 453 ~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~ls~N~l~~----~~~~~l~ 519 (632)
++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|++++ .++..+.
T Consensus 316 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 395 (461)
T 1z7x_W 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH
Confidence 9999999999986 3455667799999999999999877766653 7899999999999996 5677788
Q ss_pred CCCCcceEecCCCcccChHHHHHHHHHcCC
Q 006752 520 PPRSLKLLDLHGGWLLTEDAILQFCKMHPR 549 (632)
Q Consensus 520 ~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 549 (632)
.+++|++|++++|++ ++.....+.+..+.
T Consensus 396 ~~~~L~~L~l~~N~i-~~~~~~~l~~~l~~ 424 (461)
T 1z7x_W 396 ANHSLRELDLSNNCL-GDAGILQLVESVRQ 424 (461)
T ss_dssp HCCCCCEEECCSSSC-CHHHHHHHHHHHTS
T ss_pred hCCCccEEECCCCCC-CHHHHHHHHHHhcc
Confidence 889999999999997 77777777776653
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.4e-33 Score=288.87 Aligned_cols=315 Identities=17% Similarity=0.238 Sum_probs=218.4
Q ss_pred CCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEE
Q 006752 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218 (632)
Q Consensus 139 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 218 (632)
++++++|+++++.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666677776666655555566677777777777776665555666777777777777777666666666666666666
Q ss_pred ccCCCCCCCC-----CCCCCCEEECCCCcccchhc-cccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCC
Q 006752 219 LAWTGVTKLP-----NISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292 (632)
Q Consensus 219 l~~n~l~~l~-----~l~~L~~L~L~~~~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 292 (632)
+++|.++.++ .+++|++|++++|.+..+++ .+..+++|++|++++|.+++++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------- 181 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------------------- 181 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----------------------
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----------------------
Confidence 6665555432 34555555555555554433 2345555555555555554432
Q ss_pred chhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHh
Q 006752 293 RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS 372 (632)
Q Consensus 293 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 372 (632)
+..+++|++|++++|.+++.. ..++|++|++++|.+..... ...++|++|++++|.+++. ..+.
T Consensus 182 ----~~~l~~L~~L~l~~n~l~~~~------~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 182 ----LSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp ----GGGCTTCSEEECCSSCCSEEE------CCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSCCCCC--GGGG
T ss_pred ----cccccccceeecccccccccC------CCCcceEEECCCCeeeeccc----cccccccEEECCCCCCccc--HHHc
Confidence 334455666666666555421 11567777777777665422 2357888999999888764 4678
Q ss_pred cCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcc
Q 006752 373 MMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHL 452 (632)
Q Consensus 373 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L 452 (632)
.+++|++|++++|.+++..|. .+.++++|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~---------------------------------------------------~~~~l~~L 274 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYH---------------------------------------------------PFVKMQRL 274 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESG---------------------------------------------------GGTTCSSC
T ss_pred CCCCccEEECCCCcCCCcChh---------------------------------------------------HccccccC
Confidence 899999999999999887665 56778999
Q ss_pred cccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCC
Q 006752 453 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 532 (632)
Q Consensus 453 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N 532 (632)
++|++++|++++ ++..+..+++|++|++++|++++ +|..+..+++|++|++++|+++... +..+++|+.|++++|
T Consensus 275 ~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 275 ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSS
T ss_pred CEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCC
Confidence 999999999988 56667789999999999999997 5667888999999999999998863 567789999999999
Q ss_pred cccChHHHHHHHHHcC
Q 006752 533 WLLTEDAILQFCKMHP 548 (632)
Q Consensus 533 ~l~~~~~~~~~~~~~~ 548 (632)
++.|.+. ..+.+..+
T Consensus 350 ~~~~~~~-~~~~~~~~ 364 (390)
T 3o6n_A 350 DWDCNSL-RALFRNVA 364 (390)
T ss_dssp CEEHHHH-HHHTTTCC
T ss_pred CccchhH-HHHHHHHH
Confidence 9966543 34444443
No 41
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.1e-33 Score=311.21 Aligned_cols=433 Identities=17% Similarity=0.174 Sum_probs=326.0
Q ss_pred cEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCc-------------hhHHhhh-CCCCcCEEeccCCCCCChhhH
Q 006752 68 EAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTS-------------SALWALT-GMTCLKELDLSRCVKVTDAGM 133 (632)
Q Consensus 68 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~-------------~~~~~l~-~l~~L~~L~L~~~~~l~~~~~ 133 (632)
..+.+..+ ........+.++++|++|++++|..+.+ .....+. .+++|++|+|++| .+++..+
T Consensus 53 ~~l~~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~ 129 (592)
T 3ogk_B 53 EHVTMALC--YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDL 129 (592)
T ss_dssp CEEEESCG--GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHH
T ss_pred cEEEEeec--cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHH
Confidence 34555543 2223456778999999999988753221 1222333 8999999999999 7888888
Q ss_pred hhhcC-CCC-ccEEEccCCC-CCHhH-HHHhcCCCCCCEEEcCCCCCChH----HHHhccCCCCccEEEecCCCCC----
Q 006752 134 KHLLS-IST-LEKLWLSETG-LTADG-IALLSSLQNLSVLDLGGLPVTDL----VLRSLQVLTKLEYLDLWGSQVS---- 201 (632)
Q Consensus 134 ~~l~~-l~~-L~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~---- 201 (632)
..+.. ++. |++|++++|. ++... +.....+++|++|++++|.+.+. ++..+..+++|++|++++|.++
T Consensus 130 ~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~ 209 (592)
T 3ogk_B 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP 209 (592)
T ss_dssp HHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH
T ss_pred HHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH
Confidence 87775 445 9999999986 43322 33445899999999999987654 4455678999999999999987
Q ss_pred chhhHhhcCCCCCcEEEccCCCCCCCC----CCCCCCEEECCCCccc----chhccccCCCCCcEEEeeCCCCCchhhhh
Q 006752 202 NRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTID----SILEGNENKAPLAKISLAGTTFINEREAF 273 (632)
Q Consensus 202 ~~~~~~l~~l~~L~~L~l~~n~l~~l~----~l~~L~~L~L~~~~l~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 273 (632)
+..+..+..+++|++|++++|.+.+++ .+++|++|+++..... ..+..+..+++|+.++++++....++..
T Consensus 210 ~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~- 288 (592)
T 3ogk_B 210 KDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL- 288 (592)
T ss_dssp HHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-
T ss_pred HHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH-
Confidence 345566778999999999999887644 6799999999854322 3445666889999999998765555543
Q ss_pred hhhcCCCccEEeccCCCCCch---hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEcc-----------CCcCc
Q 006752 274 LYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS-----------NTRFS 339 (632)
Q Consensus 274 ~~~~~~~L~~L~ls~n~l~~~---~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~-----------~n~l~ 339 (632)
+..+++|++|++++|.++.. ..+..+++|++|+++ +.+.+.....+...+++|++|+++ .+.++
T Consensus 289 -~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 289 -FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp -GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred -HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 44788999999999997665 336889999999999 566666666666556999999999 36788
Q ss_pred chhHHHHHhcCCCCcEEEccCCCCChHHHHHHhc-CCCccEEEcc----CCccccccCCCccchhhhhhhhhhhhhceec
Q 006752 340 SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM-MPSLKFIDIS----NTDIKGMYPSGQMNVFFSAYCFMIVYNLFLH 414 (632)
Q Consensus 340 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~L~~L~Ls----~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (632)
+.....+...|++|++|+++.+.+++..+..++. +++|+.|+++ .|.+++. |..
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~-p~~-------------------- 425 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL-PLD-------------------- 425 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC-CCH--------------------
T ss_pred HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc-hHH--------------------
Confidence 7777776678999999999999999988888875 9999999997 5556553 210
Q ss_pred cccccccccccccchhhhcccccccccchHHhhcCCcccccccCcc--CCCCCccccccC-cccccccccccccCCCc-c
Q 006752 415 AYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT--QVSDATLFPLST-FKELIHLSLRNASLTDV-S 490 (632)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~-~ 490 (632)
+.++ ..+.++++|++|++++| .+++..+..+.. +++|++|++++|++++. .
T Consensus 426 -----------------------~~~~--~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 426 -----------------------NGVR--SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp -----------------------HHHH--HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred -----------------------HHHH--HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 0000 24677899999999864 477766666654 89999999999999874 4
Q ss_pred hhhhccCCCCcEEeecCceeccCCCC-CCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeee
Q 006752 491 LHQLSSLSKLTNLSIRDAVLTNSGLG-SFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW 553 (632)
Q Consensus 491 ~~~~~~l~~L~~L~ls~N~l~~~~~~-~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 553 (632)
+..+..+++|++|++++|++++.... .+..+++|++|++++|++ ++.....+.+..|.+.+.
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i-t~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA-SMTGQDLMQMARPYWNIE 543 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC-CTTCTTGGGGCCTTEEEE
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC-CHHHHHHHHHhCCCcEEE
Confidence 55668899999999999998765333 334689999999999995 666666666666765443
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5e-33 Score=297.25 Aligned_cols=299 Identities=19% Similarity=0.170 Sum_probs=156.8
Q ss_pred CcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEe
Q 006752 116 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 195 (632)
Q Consensus 116 ~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L 195 (632)
++++|++++| .++...+..|.++++|++|+|++|.+++..+..|.++++|++|++++|.+....+..|.++++|++|++
T Consensus 33 ~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 4444444444 344443444444445555555544444444444444555555555555444433333444555555555
Q ss_pred cCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccch-hccccCCCCCcEEEeeCCCCCchhhhhh
Q 006752 196 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFINEREAFL 274 (632)
Q Consensus 196 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 274 (632)
++|.+++..+..+..+++|++|++++ |.+..+ +..+..+++|++|++++|.+.+++.. .
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~-------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~ 171 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGD-------------------NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE-A 171 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECC-------------------TTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH-H
T ss_pred CCCccccCChhHccccccCCEEECCC-------------------CccceeChhhccCCCCCCEEECCCCcCcccChh-H
Confidence 55555444444444444444444433 333322 22334555566666666655554432 2
Q ss_pred hhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCC
Q 006752 275 YIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPN 352 (632)
Q Consensus 275 ~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 352 (632)
+..+++|+.|++++|.+... ..+..+++|++|++++|...+..+...... .+|++|++++|++++.....+ ..+++
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~-~~l~~ 249 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAV-RHLVY 249 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHHH-TTCTT
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcccccCHHHh-cCccc
Confidence 34556666666666665554 345566677777777665554444333333 456666666666655444333 45566
Q ss_pred CcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhh
Q 006752 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQ 432 (632)
Q Consensus 353 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (632)
|++|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------------------------- 290 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY--------------------------------------- 290 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT---------------------------------------
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH---------------------------------------
Confidence 66666666666555555555666666666666666555443
Q ss_pred cccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCC
Q 006752 433 VGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 488 (632)
Q Consensus 433 l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 488 (632)
.|.++++|++|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 291 ------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 291 ------------AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp ------------TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ------------HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 34455566666666666666555555556666666666665553
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.9e-33 Score=288.03 Aligned_cols=288 Identities=15% Similarity=0.171 Sum_probs=171.5
Q ss_pred CCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCE
Q 006752 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSV 168 (632)
Q Consensus 89 ~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 168 (632)
++++++|+++++. ++..+...+.++++|++|++++| .++...+..|.++++|++|++++|.+++..+..|..+++|++
T Consensus 44 l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCc-hhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3555566665555 55544444555566666666655 455544445555666666666666555554555555666666
Q ss_pred EEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC--CCCCCCEEECCCCcccch
Q 006752 169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDSI 246 (632)
Q Consensus 169 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~--~l~~L~~L~L~~~~l~~~ 246 (632)
|++++|.+....+..|+.+++|++|++++|.+++..+..+..+++|++|++++|.++.++ .+++|++|++++|.+..+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc
Confidence 666666655433333455566666666666665555555555666666666666555432 455666666666655533
Q ss_pred hccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCC
Q 006752 247 LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA 326 (632)
Q Consensus 247 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 326 (632)
+ ..++|++|++++|.+..++.. ..++|+.|++++|.+++.+.+..+++|++|++++|.+++..+..+..+ +
T Consensus 202 ~----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~ 272 (390)
T 3o6n_A 202 A----IPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM-Q 272 (390)
T ss_dssp E----CCSSCSEEECCSSCCCEEECC----CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTC-S
T ss_pred C----CCCcceEEECCCCeeeecccc----ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcccc-c
Confidence 2 223566666666666554332 235667777777776666666777777777777777776666666555 6
Q ss_pred CCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccc
Q 006752 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGM 390 (632)
Q Consensus 327 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~ 390 (632)
+|++|++++|++++..... ..+++|++|++++|++++ .|..+..+++|++|++++|++++.
T Consensus 273 ~L~~L~L~~n~l~~~~~~~--~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 273 RLERLYISNNRLVALNLYG--QPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp SCCEEECCSSCCCEEECSS--SCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC
T ss_pred cCCEEECCCCcCcccCccc--CCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee
Confidence 7777777777766542211 456777777777777764 334456677777777777776654
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.3e-32 Score=298.38 Aligned_cols=308 Identities=17% Similarity=0.240 Sum_probs=215.0
Q ss_pred CCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEE
Q 006752 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218 (632)
Q Consensus 139 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 218 (632)
+.+++.+++++|.+....+..|..+++|++|++++|.+.+..+..|+.+++|++|++++|.+++..+..|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45666666766666665555566677777777777777666556666777777777777777666666666666666666
Q ss_pred ccCCCCCCCC-----CCCCCCEEECCCCcccchhc-cccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCC
Q 006752 219 LAWTGVTKLP-----NISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292 (632)
Q Consensus 219 l~~n~l~~l~-----~l~~L~~L~L~~~~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 292 (632)
+++|.++.++ .+++|++|++++|.+..+++ .+..+++|++|++++|.+.
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------------- 184 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT------------------------- 184 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-------------------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-------------------------
Confidence 6555554432 34445555555555544333 2334455555555555444
Q ss_pred chhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHh
Q 006752 293 RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS 372 (632)
Q Consensus 293 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 372 (632)
+. .+..+++|+.|++++|.+++.. ..++|++|++++|.+..... ...++|+.|++++|.+++. ..+.
T Consensus 185 ~~-~~~~l~~L~~L~l~~n~l~~l~------~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~L~~n~l~~~--~~l~ 251 (597)
T 3oja_B 185 HV-DLSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT--AWLL 251 (597)
T ss_dssp BC-CGGGCTTCSEEECCSSCCSEEE------CCTTCSEEECCSSCCCEEEC----SCCSCCCEEECCSSCCCCC--GGGG
T ss_pred Cc-ChhhhhhhhhhhcccCcccccc------CCchhheeeccCCccccccc----ccCCCCCEEECCCCCCCCC--hhhc
Confidence 43 2344556666666666665421 11567777777777665432 2246888999999888863 5688
Q ss_pred cCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcc
Q 006752 373 MMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHL 452 (632)
Q Consensus 373 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L 452 (632)
.+++|+.|++++|.+.+..|. .+.++++|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~---------------------------------------------------~~~~l~~L 280 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYH---------------------------------------------------PFVKMQRL 280 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESG---------------------------------------------------GGTTCSSC
T ss_pred cCCCCCEEECCCCccCCCCHH---------------------------------------------------HhcCccCC
Confidence 899999999999999987666 56778999
Q ss_pred cccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCC
Q 006752 453 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 532 (632)
Q Consensus 453 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N 532 (632)
++|+|++|.+++ +|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++++.. +..+++|+.|++++|
T Consensus 281 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 281 ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHN 355 (597)
T ss_dssp CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSS
T ss_pred CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCC
Confidence 999999999998 57777789999999999999997 6677889999999999999998863 566789999999999
Q ss_pred cccChHHH
Q 006752 533 WLLTEDAI 540 (632)
Q Consensus 533 ~l~~~~~~ 540 (632)
++.|.+..
T Consensus 356 ~~~~~~~~ 363 (597)
T 3oja_B 356 DWDCNSLR 363 (597)
T ss_dssp CEEHHHHH
T ss_pred CCCChhHH
Confidence 99666533
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.9e-32 Score=297.83 Aligned_cols=240 Identities=15% Similarity=0.170 Sum_probs=142.3
Q ss_pred CCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCE
Q 006752 89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSV 168 (632)
Q Consensus 89 ~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 168 (632)
+++++.|++++|. ++..+...+.++++|++|++++| .++...+..|..+++|++|+|++|.+++..+..|..+++|++
T Consensus 50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4566777777766 66666666667777777777776 566655556667777777777777777666666677777777
Q ss_pred EEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC--CCCCCCEEECCCCcccch
Q 006752 169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDSI 246 (632)
Q Consensus 169 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~--~l~~L~~L~L~~~~l~~~ 246 (632)
|++++|.+.+..+..|+.+++|++|++++|.+++..|..+..+++|++|++++|.++.++ .+++|+.|++++|.+..+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccc
Confidence 777777776655445567777777777777777666666677777777777776666533 455666666666655533
Q ss_pred hccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCC
Q 006752 247 LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA 326 (632)
Q Consensus 247 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 326 (632)
+ ..++|+.|++++|.+..++... .++|+.|++++|.+++...+..+++|++|++++|.+++..|..+..+ +
T Consensus 208 ~----~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~ 278 (597)
T 3oja_B 208 A----IPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM-Q 278 (597)
T ss_dssp E----CCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTC-S
T ss_pred c----CCchhheeeccCCccccccccc----CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCc-c
Confidence 2 2335555555555554443321 23455555555555444444444555555555554444433333333 3
Q ss_pred CCcEEEccCCcCc
Q 006752 327 NLRNLNLSNTRFS 339 (632)
Q Consensus 327 ~L~~L~l~~n~l~ 339 (632)
+|++|++++|.++
T Consensus 279 ~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 279 RLERLYISNNRLV 291 (597)
T ss_dssp SCCEEECTTSCCC
T ss_pred CCCEEECCCCCCC
Confidence 4444444444333
No 46
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=1.1e-29 Score=279.35 Aligned_cols=391 Identities=20% Similarity=0.229 Sum_probs=254.6
Q ss_pred hcCcccEEeccCCCCCCHHHHHHhc-cCCCccEEEcCCCCCCCchhHHhhh-CCCCcCEEeccCCCCCChhhHhhhc---
Q 006752 63 FKHNAEAIELRGENSVDAEWMAYLG-AFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLL--- 137 (632)
Q Consensus 63 ~~~~l~~L~Ls~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~i~~~~~~~l~-~l~~L~~L~L~~~~~l~~~~~~~l~--- 137 (632)
.+++|++|+|++|. +++.....+. .+++|++|++++|..++......+. ++++|++|++++| .+++.....+.
T Consensus 103 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES-DVDDVSGHWLSHFP 180 (594)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC-EEECCCGGGGGGSC
T ss_pred hCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC-ccCCcchHHHHHHh
Confidence 46899999999995 7776666665 7999999999999657766565555 8999999999999 46554444333
Q ss_pred -CCCCccEEEccCCC--CCHhHH-HHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCC-------CCchhhH
Q 006752 138 -SISTLEKLWLSETG--LTADGI-ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-------VSNRGAA 206 (632)
Q Consensus 138 -~l~~L~~L~L~~n~--i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~ 206 (632)
.+++|++|++++|. +..... ..+..+++|++|++++|...+.++..+..+++|++|+++.+. +.+ .+.
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~ 259 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSV 259 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHH
Confidence 67899999999996 554333 334578999999999995444477888899999999977654 222 344
Q ss_pred hhcCCCCCcEE-EccCCCCCCCC----CCCCCCEEECCCCcccc--hhccccCCCCCcEEEeeCCCCCchhhhhhhhcCC
Q 006752 207 VLKMFPRLSFL-NLAWTGVTKLP----NISSLECLNLSNCTIDS--ILEGNENKAPLAKISLAGTTFINEREAFLYIETS 279 (632)
Q Consensus 207 ~l~~l~~L~~L-~l~~n~l~~l~----~l~~L~~L~L~~~~l~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 279 (632)
.+.++++|+.+ .+.......++ .+++|++|++++|.++. +...+..+++|++|++++| +...........++
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 77889999998 44443333333 46788888888888662 3334557788888888877 43322222233577
Q ss_pred CccEEeccC---------CCCCch--hhh-hcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEcc--C----CcCc--
Q 006752 280 LLSFLDVSN---------SSLSRF--CFL-TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS--N----TRFS-- 339 (632)
Q Consensus 280 ~L~~L~ls~---------n~l~~~--~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~--~----n~l~-- 339 (632)
+|++|++++ +.++.. ..+ ..+++|++|.+..+.+++..+..+...+++|++|+++ + +.++
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 788887733 334332 222 3467777776666777766666665444677777776 3 4455
Q ss_pred --chhHHHHHhcCCCCcEEEccCCCCChHHHHHHhc-CCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccc
Q 006752 340 --SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM-MPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAY 416 (632)
Q Consensus 340 --~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (632)
+.....++..+++|++|++++ .+++..+..++. +++|++|++++|.+++..+.
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~----------------------- 474 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH----------------------- 474 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------------------
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH-----------------------
Confidence 223333345667777777766 566666655554 66777777777766543221
Q ss_pred cccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcccc-ccCcccccccccccccCCCcchhhh-
Q 006752 417 GYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP-LSTFKELIHLSLRNASLTDVSLHQL- 494 (632)
Q Consensus 417 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~- 494 (632)
....++++|++|+|++|.+++..+.. ...+++|+.|++++|+++......+
T Consensus 475 ---------------------------~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 527 (594)
T 2p1m_B 475 ---------------------------HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLG 527 (594)
T ss_dssp ---------------------------HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHH
T ss_pred ---------------------------HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH
Confidence 01245667777777777665543332 2346677777777776654444444
Q ss_pred ccCCCCcEEeecCc
Q 006752 495 SSLSKLTNLSIRDA 508 (632)
Q Consensus 495 ~~l~~L~~L~ls~N 508 (632)
..++.|+...+..+
T Consensus 528 ~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 528 QKMPKLNVEVIDER 541 (594)
T ss_dssp HHCTTEEEEEECSS
T ss_pred HhCCCCEEEEecCC
Confidence 34566655555443
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=6.6e-29 Score=251.84 Aligned_cols=288 Identities=17% Similarity=0.216 Sum_probs=178.1
Q ss_pred CCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEc
Q 006752 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219 (632)
Q Consensus 140 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 219 (632)
.+++.++++++.++. .|..+ .+++++|++++|.+++..+..|+++++|++|++++|.+++..|..+..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 367778887777664 23222 256777777777777766556777777777777777777666666666666666666
Q ss_pred cCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch----h
Q 006752 220 AWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----C 295 (632)
Q Consensus 220 ~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~ 295 (632)
++|.++.++ ..++ ++|++|++++|.+.+++.. .+..+++|++|++++|.+... .
T Consensus 108 s~n~l~~l~-------------------~~~~--~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~ 165 (330)
T 1xku_A 108 SKNQLKELP-------------------EKMP--KTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGIENG 165 (330)
T ss_dssp CSSCCSBCC-------------------SSCC--TTCCEEECCSSCCCBBCHH-HHTTCTTCCEEECCSSCCCGGGBCTT
T ss_pred CCCcCCccC-------------------hhhc--ccccEEECCCCcccccCHh-HhcCCccccEEECCCCcCCccCcChh
Confidence 555554433 3222 4555555555555544332 233455555555555555321 3
Q ss_pred hhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCC
Q 006752 296 FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP 375 (632)
Q Consensus 296 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 375 (632)
.+..+++|++|++++|.++ .... ...++|++|++++|++++..+..+..++
T Consensus 166 ~~~~l~~L~~L~l~~n~l~-------------------------~l~~----~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTNIT-------------------------TIPQ----GLPPSLTELHLDGNKITKVDAASLKGLN 216 (330)
T ss_dssp GGGGCTTCCEEECCSSCCC-------------------------SCCS----SCCTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred hccCCCCcCEEECCCCccc-------------------------cCCc----cccccCCEEECCCCcCCccCHHHhcCCC
Confidence 3445555555555555544 2111 1125677777777777666666677777
Q ss_pred CccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCccccc
Q 006752 376 SLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERL 455 (632)
Q Consensus 376 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L 455 (632)
+|++|++++|.+++..+. .+..+++|++|
T Consensus 217 ~L~~L~Ls~n~l~~~~~~---------------------------------------------------~~~~l~~L~~L 245 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNG---------------------------------------------------SLANTPHLREL 245 (330)
T ss_dssp TCCEEECCSSCCCEECTT---------------------------------------------------TGGGSTTCCEE
T ss_pred CCCEEECCCCcCceeChh---------------------------------------------------hccCCCCCCEE
Confidence 777777777777765443 35566777777
Q ss_pred ccCccCCCCCccccccCcccccccccccccCCCcchhhhcc------CCCCcEEeecCceecc--CCCCCCCCCCCcceE
Q 006752 456 NLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS------LSKLTNLSIRDAVLTN--SGLGSFKPPRSLKLL 527 (632)
Q Consensus 456 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~ls~N~l~~--~~~~~l~~~~~L~~L 527 (632)
++++|.++. +|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|.+.. ..|..|..+..++.+
T Consensus 246 ~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l 324 (330)
T 1xku_A 246 HLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324 (330)
T ss_dssp ECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred ECCCCcCcc-CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEE
Confidence 777777774 5666777777777777777777766666643 3677778888887754 456677777788888
Q ss_pred ecCCCc
Q 006752 528 DLHGGW 533 (632)
Q Consensus 528 ~l~~N~ 533 (632)
++++|+
T Consensus 325 ~L~~N~ 330 (330)
T 1xku_A 325 QLGNYK 330 (330)
T ss_dssp EC----
T ss_pred EecccC
Confidence 887774
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=6.3e-29 Score=251.97 Aligned_cols=289 Identities=16% Similarity=0.148 Sum_probs=187.5
Q ss_pred CcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEe
Q 006752 116 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 195 (632)
Q Consensus 116 ~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L 195 (632)
++++++++++ .++.. +..+ .+.|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|+.+++|++|++
T Consensus 32 ~l~~l~~~~~-~l~~l-p~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKV-PKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTS-CCCSC-CCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCC-Ccccc-CccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 7999999988 55543 2222 378999999999999877778999999999999999999988889999999999999
Q ss_pred cCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhc-cccCCCCCcEEEeeCCCCCchh-hhh
Q 006752 196 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINER-EAF 273 (632)
Q Consensus 196 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~-~~~ 273 (632)
++|.++.. |..+. ++|++|++ ++|.+..++. .+..+++|++|++++|.+.... ...
T Consensus 108 s~n~l~~l-~~~~~--~~L~~L~l-------------------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 165 (330)
T 1xku_A 108 SKNQLKEL-PEKMP--KTLQELRV-------------------HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165 (330)
T ss_dssp CSSCCSBC-CSSCC--TTCCEEEC-------------------CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT
T ss_pred CCCcCCcc-Chhhc--ccccEEEC-------------------CCCcccccCHhHhcCCccccEEECCCCcCCccCcChh
Confidence 99998743 32221 44555554 4454444333 2345666666666666664311 112
Q ss_pred hhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCC
Q 006752 274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL 353 (632)
Q Consensus 274 ~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 353 (632)
.+..+++|++|++++|.++.++... .++|++|++++|.+++..+..+ ..+++|
T Consensus 166 ~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~--------------------------~~l~~L 218 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASL--------------------------KGLNNL 218 (330)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGG--------------------------TTCTTC
T ss_pred hccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHHh--------------------------cCCCCC
Confidence 3456778888888888776542111 1455555555555544333333 345566
Q ss_pred cEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhc
Q 006752 354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQV 433 (632)
Q Consensus 354 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 433 (632)
++|++++|.+++..+..+..+++|++|++++|+++. +|.
T Consensus 219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~---------------------------------------- 257 (330)
T 1xku_A 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPG---------------------------------------- 257 (330)
T ss_dssp CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCT----------------------------------------
T ss_pred CEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CCh----------------------------------------
Confidence 666666666655555556666666677776666663 343
Q ss_pred ccccccccchHHhhcCCcccccccCccCCCCCccccccC------cccccccccccccCCC--cchhhhccCCCCcEEee
Q 006752 434 GAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST------FKELIHLSLRNASLTD--VSLHQLSSLSKLTNLSI 505 (632)
Q Consensus 434 ~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l 505 (632)
.+..+++|++|++++|.+++..+..|.. .+.|+.|++++|.+.. ..|..|..+.+++.+++
T Consensus 258 -----------~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L 326 (330)
T 1xku_A 258 -----------GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 326 (330)
T ss_dssp -----------TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC
T ss_pred -----------hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEe
Confidence 2345566777777777777655555543 3567777777777653 45667777788888888
Q ss_pred cCce
Q 006752 506 RDAV 509 (632)
Q Consensus 506 s~N~ 509 (632)
++|+
T Consensus 327 ~~N~ 330 (330)
T 1xku_A 327 GNYK 330 (330)
T ss_dssp ----
T ss_pred cccC
Confidence 7774
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=5.8e-30 Score=256.99 Aligned_cols=250 Identities=17% Similarity=0.208 Sum_probs=211.4
Q ss_pred CCCCEEECCCCccc---chhccccCCCCCcEEEeeC-CCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCC
Q 006752 231 SSLECLNLSNCTID---SILEGNENKAPLAKISLAG-TTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALE 304 (632)
Q Consensus 231 ~~L~~L~L~~~~l~---~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~ 304 (632)
.++++|++++|.+. .+|..+..+++|++|++++ |.+.+..+. .+..+++|++|++++|.+++. ..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 46777777777776 4777788888888888885 777653332 355788888888888888754 5688899999
Q ss_pred eeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCC-CCcEEEccCCCCChHHHHHHhcCCCccEEEcc
Q 006752 305 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP-NLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 383 (632)
Q Consensus 305 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 383 (632)
+|++++|.+++..|..+..+ ++|++|++++|++++..+..+ +.++ +|++|++++|++++..|..+..++ |++|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhcC-CCCCeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 99999999888788777777 899999999999987777766 5566 899999999999888888888887 9999999
Q ss_pred CCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCC
Q 006752 384 NTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 463 (632)
Q Consensus 384 ~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~ 463 (632)
+|.+++..|. .+..+++|++|++++|.++
T Consensus 206 ~N~l~~~~~~---------------------------------------------------~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 206 RNMLEGDASV---------------------------------------------------LFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp SSEEEECCGG---------------------------------------------------GCCTTSCCSEEECCSSEEC
T ss_pred CCcccCcCCH---------------------------------------------------HHhcCCCCCEEECCCCcee
Confidence 9999887665 4677899999999999999
Q ss_pred CCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccCh
Q 006752 464 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE 537 (632)
Q Consensus 464 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~ 537 (632)
+..+. +..+++|++|+|++|++++.+|.++..+++|++|++++|++++.+|.. ..+++|+.+++++|+..|+
T Consensus 235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 86655 788999999999999999989999999999999999999999988876 7889999999999996564
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=5.6e-29 Score=252.52 Aligned_cols=288 Identities=17% Similarity=0.186 Sum_probs=159.3
Q ss_pred CCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEc
Q 006752 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219 (632)
Q Consensus 140 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 219 (632)
.+++.++++++.++. .|..+ .++|++|++++|.+.+..+..|.++++|++|++++|++++..|..+..+++|++|++
T Consensus 33 c~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 368888888888764 33333 367888888888888776777888888888888888888877778888877777777
Q ss_pred cCCCCCCCCC--CCCCCEEECCCCcccchhcc-ccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhh
Q 006752 220 AWTGVTKLPN--ISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCF 296 (632)
Q Consensus 220 ~~n~l~~l~~--l~~L~~L~L~~~~l~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 296 (632)
++|.++.++. .++|++|++++|.+..++.. +..+++|++|++++|.+...... ...
T Consensus 110 ~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------------~~~ 168 (332)
T 2ft3_A 110 SKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE---------------------PGA 168 (332)
T ss_dssp CSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC---------------------TTS
T ss_pred CCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC---------------------ccc
Confidence 7777666542 24555555555555544432 23444444444444443321000 022
Q ss_pred hhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCC
Q 006752 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 376 (632)
Q Consensus 297 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 376 (632)
+..+ +|++|++++|.+++.. .. ..++|++|++++|.+++..+..+..+++
T Consensus 169 ~~~l-~L~~L~l~~n~l~~l~-~~----------------------------~~~~L~~L~l~~n~i~~~~~~~l~~l~~ 218 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLTGIP-KD----------------------------LPETLNELHLDHNKIQAIELEDLLRYSK 218 (332)
T ss_dssp SCSC-CCSCCBCCSSBCSSCC-SS----------------------------SCSSCSCCBCCSSCCCCCCTTSSTTCTT
T ss_pred ccCC-ccCEEECcCCCCCccC-cc----------------------------ccCCCCEEECCCCcCCccCHHHhcCCCC
Confidence 3333 5566666666555311 10 0134444444444444444444445555
Q ss_pred ccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccc
Q 006752 377 LKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLN 456 (632)
Q Consensus 377 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~ 456 (632)
|++|++++|++++..+. .+..+++|++|+
T Consensus 219 L~~L~L~~N~l~~~~~~---------------------------------------------------~~~~l~~L~~L~ 247 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIENG---------------------------------------------------SLSFLPTLRELH 247 (332)
T ss_dssp CSCCBCCSSCCCCCCTT---------------------------------------------------GGGGCTTCCEEE
T ss_pred CCEEECCCCcCCcCChh---------------------------------------------------HhhCCCCCCEEE
Confidence 55555555555544332 234445555555
Q ss_pred cCccCCCCCccccccCcccccccccccccCCCcchhhhcc------CCCCcEEeecCceec--cCCCCCCCCCCCcceEe
Q 006752 457 LEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS------LSKLTNLSIRDAVLT--NSGLGSFKPPRSLKLLD 528 (632)
Q Consensus 457 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~ls~N~l~--~~~~~~l~~~~~L~~L~ 528 (632)
+++|+++. +|..+..+++|++|++++|++++..+..|.. .++|+.|++++|++. +..+..|..+++|+.++
T Consensus 248 L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 248 LDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp CCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred CCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence 55555553 4444555555555555555555544444433 244556666666555 44455555556666666
Q ss_pred cCCCc
Q 006752 529 LHGGW 533 (632)
Q Consensus 529 l~~N~ 533 (632)
+++|+
T Consensus 327 l~~n~ 331 (332)
T 2ft3_A 327 FGNYK 331 (332)
T ss_dssp C----
T ss_pred ccccc
Confidence 65553
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.6e-29 Score=249.03 Aligned_cols=256 Identities=16% Similarity=0.160 Sum_probs=183.8
Q ss_pred EECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch----hhhhcCCCCCeeeccCC
Q 006752 236 LNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSS 311 (632)
Q Consensus 236 L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~l~~~~~L~~L~l~~n 311 (632)
++++++.++.+|..+. ++|++|++++|.+..++.. .+..+++|++|++++|.++.. ..+..+++|++|++++|
T Consensus 12 l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHh-HhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 3444444444443322 3444444444444443322 223445555555555554432 33344566666666666
Q ss_pred CCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccc-c
Q 006752 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG-M 390 (632)
Q Consensus 312 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~-~ 390 (632)
.+.+. +..+..+ ++|++|++++|++++......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .
T Consensus 89 ~i~~l-~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 89 GVITM-SSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SEEEE-EEEEETC-TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred ccccC-hhhcCCC-CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 65532 2223333 6777777777776665442223678899999999999888778888899999999999999987 4
Q ss_pred cCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccc
Q 006752 391 YPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 470 (632)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 470 (632)
.|. .+..+++|++|++++|.+++..|..|
T Consensus 167 ~~~---------------------------------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~ 195 (306)
T 2z66_A 167 LPD---------------------------------------------------IFTELRNLTFLDLSQCQLEQLSPTAF 195 (306)
T ss_dssp ECS---------------------------------------------------CCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred chh---------------------------------------------------HHhhCcCCCEEECCCCCcCCcCHHHh
Confidence 454 35678899999999999999889999
Q ss_pred cCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCC-CCcceEecCCCcccChHHHHHHHHHc
Q 006752 471 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLTEDAILQFCKMH 547 (632)
Q Consensus 471 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~-~~L~~L~l~~N~l~~~~~~~~~~~~~ 547 (632)
..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+ ++|++|++++|++.++|...++.++.
T Consensus 196 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence 999999999999999999888889999999999999999999999999988 59999999999999988776666554
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=1.7e-28 Score=248.94 Aligned_cols=148 Identities=14% Similarity=0.190 Sum_probs=120.0
Q ss_pred CcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEe
Q 006752 116 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 195 (632)
Q Consensus 116 ~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L 195 (632)
++++++++++ .++.. +..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|+++++|++|++
T Consensus 34 ~l~~l~~~~~-~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAV-PKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSS-CCSSC-CSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCC-Ccccc-CCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 7999999998 55543 2333 378999999999999877788999999999999999999988899999999999999
Q ss_pred cCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC-----CCCCCCEEECCCCcccc--h-hccccCCCCCcEEEeeCCCCC
Q 006752 196 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDS--I-LEGNENKAPLAKISLAGTTFI 267 (632)
Q Consensus 196 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~l~~L~~L~L~~~~l~~--~-~~~~~~~~~L~~L~l~~n~~~ 267 (632)
++|.++.. |..+. ++|++|++++|.++.++ .+++|++|++++|.++. + +..+..+ +|++|++++|.+.
T Consensus 110 ~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 99999854 33333 89999999999988654 68999999999999973 3 3333344 7777888777776
Q ss_pred chhh
Q 006752 268 NERE 271 (632)
Q Consensus 268 ~~~~ 271 (632)
+++.
T Consensus 186 ~l~~ 189 (332)
T 2ft3_A 186 GIPK 189 (332)
T ss_dssp SCCS
T ss_pred ccCc
Confidence 6543
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.6e-28 Score=255.63 Aligned_cols=257 Identities=15% Similarity=0.201 Sum_probs=200.6
Q ss_pred CCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccC
Q 006752 233 LECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSS 310 (632)
Q Consensus 233 L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~ 310 (632)
...++.++..++.+|..+. ++++.|++++|.+..++.. .+..+++|++|++++|.++.+ ..+..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 3455555555555555443 4566666666666655432 345666677777777766665 4566777777788877
Q ss_pred CCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCC-CCChHHHHHHhcCCCccEEEccCCcccc
Q 006752 311 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYMSMMPSLKFIDISNTDIKG 389 (632)
Q Consensus 311 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~L~~L~Ls~n~i~~ 389 (632)
|++++..+..+..+ ++|++|++++|+++...+..+ ..+++|++|++++| .+....+..|..+++|++|++++|+++.
T Consensus 122 n~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYL-SKLKELWLRNNPIESIPSYAF-NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp SCCSSCCTTTSCSC-SSCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CcCCeeCHhHhhcc-ccCceeeCCCCcccccCHHHh-hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 77776555555555 778888888888776555444 66888999999884 4555555578889999999999999885
Q ss_pred ccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcccc
Q 006752 390 MYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP 469 (632)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 469 (632)
. |. +..+++|++|+|++|.+++..+..
T Consensus 200 ~-~~----------------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~ 226 (440)
T 3zyj_A 200 I-PN----------------------------------------------------LTPLIKLDELDLSGNHLSAIRPGS 226 (440)
T ss_dssp C-CC----------------------------------------------------CTTCSSCCEEECTTSCCCEECTTT
T ss_pred c-cc----------------------------------------------------cCCCcccCEEECCCCccCccChhh
Confidence 4 32 456789999999999999988999
Q ss_pred ccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHc
Q 006752 470 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH 547 (632)
Q Consensus 470 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~ 547 (632)
|..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.|+|...++..+.
T Consensus 227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~ 304 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWI 304 (440)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHH
T ss_pred hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHH
Confidence 999999999999999999999999999999999999999999998889999999999999999999999887776655
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=7.2e-28 Score=255.07 Aligned_cols=256 Identities=18% Similarity=0.218 Sum_probs=199.0
Q ss_pred CEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCC
Q 006752 234 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS 311 (632)
Q Consensus 234 ~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n 311 (632)
..++.++..++.+|..+. +++++|++++|.+.++++. .+..+++|++|++++|.++.+ ..+..+++|++|++++|
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 445555555555554433 4566666666666554332 344666677777777766665 45667777888888887
Q ss_pred CCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccC-CCCChHHHHHHhcCCCccEEEccCCccccc
Q 006752 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISYMSMMPSLKFIDISNTDIKGM 390 (632)
Q Consensus 312 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~ 390 (632)
.+++..+..+..+ ++|++|++++|+++......+ ..+++|++|++++ +.+....+..|..+++|++|++++|++++.
T Consensus 134 ~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 134 WLTVIPSGAFEYL-SKLRELWLRNNPIESIPSYAF-NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp CCSBCCTTTSSSC-TTCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred cCCccChhhhccc-CCCCEEECCCCCcceeCHhHH-hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 7776555555555 788888888888776555444 6788999999988 455555555688999999999999998875
Q ss_pred cCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccc
Q 006752 391 YPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 470 (632)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 470 (632)
|. +..+++|++|+|++|.+++..|..|
T Consensus 212 -~~----------------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~ 238 (452)
T 3zyi_A 212 -PN----------------------------------------------------LTPLVGLEELEMSGNHFPEIRPGSF 238 (452)
T ss_dssp -CC----------------------------------------------------CTTCTTCCEEECTTSCCSEECGGGG
T ss_pred -cc----------------------------------------------------ccccccccEEECcCCcCcccCcccc
Confidence 33 4567899999999999999989999
Q ss_pred cCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHc
Q 006752 471 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH 547 (632)
Q Consensus 471 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~ 547 (632)
..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.|+|...++..+.
T Consensus 239 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l 315 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWL 315 (452)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHH
T ss_pred cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999998888999999999999999999999877766544
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=9.4e-28 Score=245.69 Aligned_cols=261 Identities=19% Similarity=0.218 Sum_probs=138.4
Q ss_pred CCCEEECCCCcccchhc-cccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeec
Q 006752 232 SLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDL 308 (632)
Q Consensus 232 ~L~~L~L~~~~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l 308 (632)
+|++|++++|.++.++. .+..+++|++|++++|.+.++++. .+..+++|++|++++|.++.. ..+..+++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 44444444444444333 233444444444444444433221 123344444444444444443 12444444444444
Q ss_pred cCCCCCchHH-HHHHhcCCCCcEEEccCCc-CcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCc
Q 006752 309 SSSMIGDDSV-EMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 386 (632)
Q Consensus 309 ~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~ 386 (632)
++|.+++... ..+..+ ++|++|++++|. +.+..+..+ +.+++|++|++++|++++..+..+..+++|++|++++|.
T Consensus 132 ~~n~l~~l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHL-TKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp TTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCCcccCchhhhccC-CCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 4444443222 122222 445555555442 333322222 344555555555555555444555555555555555555
Q ss_pred cccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCc
Q 006752 387 IKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 466 (632)
Q Consensus 387 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~ 466 (632)
+... |. ..+..+++|++|++++|.+++..
T Consensus 210 l~~~-~~--------------------------------------------------~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 210 HILL-LE--------------------------------------------------IFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp STTH-HH--------------------------------------------------HHHHHTTTEEEEEEESCBCTTCC
T ss_pred cccc-hh--------------------------------------------------hhhhhcccccEEECCCCcccccc
Confidence 4322 21 12344556666666666666544
Q ss_pred ccccc---CcccccccccccccCCC----cchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHH
Q 006752 467 LFPLS---TFKELIHLSLRNASLTD----VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA 539 (632)
Q Consensus 467 ~~~l~---~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~ 539 (632)
+..+. ..+.++.++++++.+++ .+|.++..+++|++|++++|+++...+..|..+++|++|++++|++.+++.
T Consensus 239 ~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 33332 24455666666666655 367788999999999999999997655557899999999999999988885
Q ss_pred -HHHHHHH
Q 006752 540 -ILQFCKM 546 (632)
Q Consensus 540 -~~~~~~~ 546 (632)
..++..+
T Consensus 319 ~l~~l~~~ 326 (353)
T 2z80_A 319 RIDYLSRW 326 (353)
T ss_dssp HHHHHHHH
T ss_pred CcHHHHHH
Confidence 4333333
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=2.5e-28 Score=245.08 Aligned_cols=251 Identities=14% Similarity=0.181 Sum_probs=167.9
Q ss_pred CCCEEEcCCCCCCh--HHHHhccCCCCccEEEecC-CCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCC
Q 006752 165 NLSVLDLGGLPVTD--LVLRSLQVLTKLEYLDLWG-SQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNC 241 (632)
Q Consensus 165 ~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~ 241 (632)
++++|++++|.+.+ .+|..++++++|++|++++ |.+.+..|..+..+++|++| ++++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L-------------------~Ls~n 111 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL-------------------YITHT 111 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEE-------------------EEEEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEE-------------------ECcCC
Confidence 45555555555555 4455555555555555553 55544444444444333333 33333
Q ss_pred ccc-chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHH
Q 006752 242 TID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEM 320 (632)
Q Consensus 242 ~l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 320 (632)
.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|..
T Consensus 112 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-----------------------~~~~~l~~L~~L~L~~N~l~~~~p~~ 168 (313)
T 1ogq_A 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-----------------------PSISSLPNLVGITFDGNRISGAIPDS 168 (313)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESCCC-----------------------GGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred eeCCcCCHHHhCCCCCCEEeCCCCccCCcCC-----------------------hHHhcCCCCCeEECcCCcccCcCCHH
Confidence 333 334444444555555555554442111 34566777777777777777666666
Q ss_pred HHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhh
Q 006752 321 VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFF 400 (632)
Q Consensus 321 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 400 (632)
+....+.|++|++++|++++..+..+ +.++ |++|++++|.+++..+..+..+++|++|++++|.+++.+|.
T Consensus 169 l~~l~~~L~~L~L~~N~l~~~~~~~~-~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------- 239 (313)
T 1ogq_A 169 YGSFSKLFTSMTISRNRLTGKIPPTF-ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK------- 239 (313)
T ss_dssp GGCCCTTCCEEECCSSEEEEECCGGG-GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-------
T ss_pred HhhhhhcCcEEECcCCeeeccCChHH-hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-------
Confidence 66662378888888888877666665 4455 88888888888877777888888888888888888765443
Q ss_pred hhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccc
Q 006752 401 SAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS 480 (632)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 480 (632)
+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 240 ---------------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 240 ---------------------------------------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp ---------------------------------------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred ---------------------------------------------ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence 34567888888888888888888888888888899
Q ss_pred cccccCCCcchhhhccCCCCcEEeecCce-ecc
Q 006752 481 LRNASLTDVSLHQLSSLSKLTNLSIRDAV-LTN 512 (632)
Q Consensus 481 Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~-l~~ 512 (632)
|++|++++.+|.. ..+++|+.+++++|+ +.+
T Consensus 275 Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 275 VSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 9888888877765 778888888888887 554
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.5e-27 Score=236.53 Aligned_cols=236 Identities=16% Similarity=0.211 Sum_probs=189.0
Q ss_pred CCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCc-CcchhHHHHHhcCCCCcE
Q 006752 279 SLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEI 355 (632)
Q Consensus 279 ~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~ 355 (632)
+++++|++++|.++.. ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|+ +....+..+ ..+++|++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~l~~~~~~~~-~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATF-HGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSCTTCCCCCTTTT-TTCTTCCE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc-cCCCEEeCCCCCCccccCHHHh-cCCcCCCE
Confidence 4556666666666555 346677777777777777776666666666 788888888886 665545554 66889999
Q ss_pred EEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccc
Q 006752 356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGA 435 (632)
Q Consensus 356 L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 435 (632)
|++++|.+++..+..+..+++|++|++++|++++..+.
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------------------------------ 147 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD------------------------------------------ 147 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------------------------------------
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh------------------------------------------
Confidence 99999999887788888999999999999999876444
Q ss_pred ccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCC
Q 006752 436 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 515 (632)
Q Consensus 436 ~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 515 (632)
.+.++++|++|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|+.|++++|++++..+
T Consensus 148 ---------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 148 ---------TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp ---------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred ---------HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 46778999999999999999777789999999999999999999989999999999999999999999877
Q ss_pred CCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCCCcchh
Q 006752 516 GSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSL 577 (632)
Q Consensus 516 ~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip~~~~~ 577 (632)
..+..+++|++|++++|++.|++...++.++..... .+.+.+....|..+..
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~----------~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFR----------GSSSEVPCSLPQRLAG 270 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCC----------SEECCCBEEESGGGTT
T ss_pred HHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcc----------cccCccccCCchHhCC
Confidence 789999999999999999999988877766654332 2345556666666544
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.1e-28 Score=243.48 Aligned_cols=269 Identities=20% Similarity=0.195 Sum_probs=163.4
Q ss_pred ccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccC
Q 006752 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221 (632)
Q Consensus 142 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 221 (632)
++..+++.+.+.......+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4445555555554444555566667777777766666666666666777777777766655443 55555555555555
Q ss_pred CCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCC
Q 006752 222 TGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMK 301 (632)
Q Consensus 222 n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~ 301 (632)
|.+++++..++|++|++++|.+..++.. .+++|
T Consensus 90 n~l~~l~~~~~L~~L~l~~n~l~~~~~~---------------------------~~~~L-------------------- 122 (317)
T 3o53_A 90 NYVQELLVGPSIETLHAANNNISRVSCS---------------------------RGQGK-------------------- 122 (317)
T ss_dssp SEEEEEEECTTCCEEECCSSCCSEEEEC---------------------------CCSSC--------------------
T ss_pred CccccccCCCCcCEEECCCCccCCcCcc---------------------------ccCCC--------------------
Confidence 5444444334444444444444332211 12333
Q ss_pred CCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEE
Q 006752 302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 381 (632)
Q Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 381 (632)
++|++++|.+++..+..+..+ ++|++|++++|++++..+..+.+.+++|++|++++|.+++.. ....+++|++|+
T Consensus 123 --~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~ 197 (317)
T 3o53_A 123 --KNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLD 197 (317)
T ss_dssp --EEEECCSSCCCSGGGBCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEE
T ss_pred --CEEECCCCCCCCccchhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEE
Confidence 333333333333333233333 455555555555555444444345666777777777666542 123477888888
Q ss_pred ccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccC
Q 006752 382 ISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ 461 (632)
Q Consensus 382 Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~ 461 (632)
+++|++++. |. .+..+++|++|++++|.
T Consensus 198 Ls~N~l~~l-~~---------------------------------------------------~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 198 LSSNKLAFM-GP---------------------------------------------------EFQSAAGVTWISLRNNK 225 (317)
T ss_dssp CCSSCCCEE-CG---------------------------------------------------GGGGGTTCSEEECTTSC
T ss_pred CCCCcCCcc-hh---------------------------------------------------hhcccCcccEEECcCCc
Confidence 888888765 33 25567888899999998
Q ss_pred CCCCccccccCcccccccccccccCC-CcchhhhccCCCCcEEeecC-ceeccCCCCC
Q 006752 462 VSDATLFPLSTFKELIHLSLRNASLT-DVSLHQLSSLSKLTNLSIRD-AVLTNSGLGS 517 (632)
Q Consensus 462 l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ls~-N~l~~~~~~~ 517 (632)
+++ +|..+..+++|+.|++++|.+. +..|.++..+++|+.+++++ +.+++..+..
T Consensus 226 l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 226 LVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred ccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 886 6777888889999999999888 67788888889999999885 4566655543
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=3.7e-26 Score=228.99 Aligned_cols=246 Identities=22% Similarity=0.343 Sum_probs=194.7
Q ss_pred cEEEccCCCCCCCCC--CCCCCEEECCCCcccchhccc-cCCCCCcEEEeeCCCCCchhh-hhhhhcCCCccEEeccCCC
Q 006752 215 SFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINERE-AFLYIETSLLSFLDVSNSS 290 (632)
Q Consensus 215 ~~L~l~~n~l~~l~~--l~~L~~L~L~~~~l~~~~~~~-~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L~ls~n~ 290 (632)
+.++.+++.++.+|. .+++++|++++|.++.+|... ..+++|++|++++|.+..... ...+..+++|++|++++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 356666666666552 357888888888888777664 578888888888888875421 1123367888889998888
Q ss_pred CCch-hhhhcCCCCCeeeccCCCCCchHH-HHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCCh-HH
Q 006752 291 LSRF-CFLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD-YA 367 (632)
Q Consensus 291 l~~~-~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~ 367 (632)
+..+ ..+..+++|++|++++|.+++..+ ..+..+ ++|++|++++|.+.+..+..+ +.+++|++|++++|.+++ ..
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTC-TTCCEEECTTSCCEECSTTTT-TTCTTCCEEECTTCEEGGGEE
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhc-cCCCEEECCCCcCCccchhhc-ccCcCCCEEECCCCccccccc
Confidence 8777 457788899999999988876554 345555 889999999998887766555 668899999999998876 46
Q ss_pred HHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhh
Q 006752 368 ISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQ 447 (632)
Q Consensus 368 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~ 447 (632)
|..+..+++|++|++++|++++..|. .+.
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~---------------------------------------------------~~~ 196 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPT---------------------------------------------------AFN 196 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTT---------------------------------------------------TTT
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHH---------------------------------------------------Hhc
Confidence 77788899999999999999887665 456
Q ss_pred cCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCC-CCcEEeecCceeccC
Q 006752 448 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS-KLTNLSIRDAVLTNS 513 (632)
Q Consensus 448 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~ls~N~l~~~ 513 (632)
++++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|+++..
T Consensus 197 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 778999999999999987777888899999999999999998888888884 899999999998864
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.9e-25 Score=227.16 Aligned_cols=252 Identities=19% Similarity=0.162 Sum_probs=156.5
Q ss_pred CCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccE
Q 006752 113 GMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY 192 (632)
Q Consensus 113 ~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~ 192 (632)
.|+...+.+++++ .++... ..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|+++++|++
T Consensus 29 ~C~~~~~c~~~~~-~l~~iP-~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSG-SLNSIP-SGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCST-TCSSCC-TTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCC-Cccccc-ccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 4566666777766 454432 222 247777788777777655556777777777777777777766666777777777
Q ss_pred EEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhc--cccCCCCCcEEEeeCCC-CCch
Q 006752 193 LDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILE--GNENKAPLAKISLAGTT-FINE 269 (632)
Q Consensus 193 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~--~~~~~~~L~~L~l~~n~-~~~~ 269 (632)
|++++|++++..+..+..+++|++|++++|.++. ++. .+..+++|++|++++|. +..+
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------l~~~~~~~~l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-------------------LGETSLFSHLTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-------------------SCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-------------------cCchhhhccCCCCcEEECCCCcccccc
Confidence 7777777776666566666666666666655543 333 33456666666666663 3333
Q ss_pred hhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHH-
Q 006752 270 REAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL- 346 (632)
Q Consensus 270 ~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~- 346 (632)
++. .+..+++|++|++++|.+++. ..+..+++|++|++++|.++......+... ++|++|++++|++++..+..+
T Consensus 166 ~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 166 QRK-DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT-SSVECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp CTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT-TTEEEEEEESCBCTTCCCC---
T ss_pred CHH-HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhc-ccccEEECCCCccccccccccc
Confidence 221 344556666666666666555 456667777777777777764333333333 777778887777765432211
Q ss_pred -HhcCCCCcEEEccCCCCChH----HHHHHhcCCCccEEEccCCcccc
Q 006752 347 -AGHLPNLEILSLSGTQIDDY----AISYMSMMPSLKFIDISNTDIKG 389 (632)
Q Consensus 347 -~~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~i~~ 389 (632)
...++.++.++++++.+++. +|..+..+++|++|++++|+++.
T Consensus 244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 12355677777777776652 45556667777777777777664
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.8e-24 Score=234.75 Aligned_cols=264 Identities=20% Similarity=0.179 Sum_probs=153.6
Q ss_pred CCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCC-CCCCCCEEECCCCcc
Q 006752 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-NISSLECLNLSNCTI 243 (632)
Q Consensus 165 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~-~l~~L~~L~L~~~~l 243 (632)
+++.|++++|.++. +|..+. ++|++|++++|.++...+ .+++|++|++++|.++.++ .+++|++|++++|.+
T Consensus 41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPL 113 (622)
T ss_dssp CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCC
T ss_pred CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcC
Confidence 46677777776663 343333 566666666666653222 3455555555555555444 334444555554444
Q ss_pred cchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHh
Q 006752 244 DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVAC 323 (632)
Q Consensus 244 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 323 (632)
+.+|. . +++|+.|++++|.++.++. .+++|++|++++|.+++...
T Consensus 114 ~~l~~---~-------------------------l~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~----- 158 (622)
T 3g06_A 114 THLPA---L-------------------------PSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPA----- 158 (622)
T ss_dssp CCCCC---C-------------------------CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-----
T ss_pred CCCCC---C-------------------------CCCcCEEECCCCCCCcCCC--CCCCCCEEECcCCcCCCcCC-----
Confidence 44433 2 3445555555555444422 13556666666665554211
Q ss_pred cCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhh
Q 006752 324 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAY 403 (632)
Q Consensus 324 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 403 (632)
..++|+.|++++|.+++.. ..+++|+.|++++|.+++... ..++|+.|++++|.++.. |.
T Consensus 159 ~~~~L~~L~L~~N~l~~l~-----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l-~~---------- 218 (622)
T 3g06_A 159 LPSELCKLWAYNNQLTSLP-----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL-PA---------- 218 (622)
T ss_dssp CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC-CC----------
T ss_pred ccCCCCEEECCCCCCCCCc-----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccccc-CC----------
Confidence 1256666666666666533 335667777777776664221 346677777777776643 32
Q ss_pred hhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCccccccccccc
Q 006752 404 CFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 483 (632)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 483 (632)
.+++|++|++++|.+++ +| ..+++|+.|+|++
T Consensus 219 --------------------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 219 --------------------------------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSG 250 (622)
T ss_dssp --------------------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCS
T ss_pred --------------------------------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCC
Confidence 12567777777777776 34 3457777777777
Q ss_pred ccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHH
Q 006752 484 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC 544 (632)
Q Consensus 484 n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~ 544 (632)
|+|+.+. . .+++|+.|++++|+++. +|..+..+++|+.|++++|++ .+..+..+.
T Consensus 251 N~L~~lp-~---~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l-~~~~~~~l~ 305 (622)
T 3g06_A 251 NRLTSLP-M---LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPL-SERTLQALR 305 (622)
T ss_dssp SCCSCCC-C---CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCC-CHHHHHHHH
T ss_pred CCCCcCC-c---ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCC-CCcCHHHHH
Confidence 7777633 3 56777777777777774 466677777777777777776 555554444
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=6.6e-26 Score=228.78 Aligned_cols=233 Identities=16% Similarity=0.147 Sum_probs=183.9
Q ss_pred CCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch-hhhhcCCCCCeeec
Q 006752 230 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDL 308 (632)
Q Consensus 230 l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l 308 (632)
.+.++.|++++|.+..+|..++.+++|++|++++|.+..+|.. +..+++|++|++++|.++.+ ..+..+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT--MQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC--GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH--HhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 4678888888888888888888888888888888888766543 34677777777777777755 45667777777777
Q ss_pred cCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccc
Q 006752 309 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 388 (632)
Q Consensus 309 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~ 388 (632)
++|.+.+..|. .+....+.+. ++.+++|++|++++|+++ .+|..+..+++|++|++++|.++
T Consensus 158 ~~n~~~~~~p~-------~~~~~~~~~~----------~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 158 RACPELTELPE-------PLASTDASGE----------HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEETTCCCCCS-------CSEEEC-CCC----------EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred CCCCCccccCh-------hHhhccchhh----------hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 77665544432 2222222111 145889999999999888 56677889999999999999988
Q ss_pred cccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccc
Q 006752 389 GMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF 468 (632)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 468 (632)
+. |. .+..+++|++|++++|.+.+.+|.
T Consensus 220 ~l-~~---------------------------------------------------~l~~l~~L~~L~Ls~n~~~~~~p~ 247 (328)
T 4fcg_A 220 AL-GP---------------------------------------------------AIHHLPKLEELDLRGCTALRNYPP 247 (328)
T ss_dssp CC-CG---------------------------------------------------GGGGCTTCCEEECTTCTTCCBCCC
T ss_pred cC-ch---------------------------------------------------hhccCCCCCEEECcCCcchhhhHH
Confidence 64 43 366788999999999999998999
Q ss_pred cccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752 469 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 534 (632)
Q Consensus 469 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l 534 (632)
.++.+++|++|+|++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|+.+++..+.+
T Consensus 248 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 999999999999999999998999999999999999999999999999999999999999998876
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=2.1e-25 Score=221.07 Aligned_cols=222 Identities=20% Similarity=0.272 Sum_probs=136.9
Q ss_pred EEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCC
Q 006752 235 CLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM 312 (632)
Q Consensus 235 ~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~ 312 (632)
+++.+++.++.+|..+ .++|++|++++|.+.+++.. .+..+++|++|++++|.++.. ..+..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHH-HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 3344444444443322 23444444444444443322 233445555555555555444 345556666666666665
Q ss_pred -CCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccccc
Q 006752 313 -IGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMY 391 (632)
Q Consensus 313 -l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~ 391 (632)
+.+..+..+..+ ++|++|++++|++++..+..+ +.+++|++|++++|++++..+..++.+++|++|++++|++++..
T Consensus 92 ~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 92 QLRSVDPATFHGL-GRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CccccCHHHhcCC-cCCCEEECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 554445555554 667777777776666544444 45677777777777777666666677777777777777777653
Q ss_pred CCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcccccc
Q 006752 392 PSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 471 (632)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 471 (632)
+. .+.++++|++|++++|.+++..|..|.
T Consensus 170 ~~---------------------------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~ 198 (285)
T 1ozn_A 170 ER---------------------------------------------------AFRGLHSLDRLLLHQNRVAHVHPHAFR 198 (285)
T ss_dssp TT---------------------------------------------------TTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred HH---------------------------------------------------HhcCccccCEEECCCCcccccCHhHcc
Confidence 33 345667777777777777776677777
Q ss_pred CcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752 472 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 472 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 512 (632)
.+++|+.|++++|++++..+..+..+++|++|++++|++..
T Consensus 199 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 77777777777777777666677777777777777777765
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=3.4e-26 Score=230.20 Aligned_cols=265 Identities=18% Similarity=0.159 Sum_probs=188.3
Q ss_pred cCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEec
Q 006752 117 LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196 (632)
Q Consensus 117 L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~ 196 (632)
++..+++.+ .+.......+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 344444444 3333333333345566666666666665555566666666666666666655432 5666666666666
Q ss_pred CCCCCchhhHhhcCCCCCcEEEccCCCCCCCC--CCCCCCEEECCCCcccchhc-cccCCCCCcEEEeeCCCCCchhhhh
Q 006752 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAF 273 (632)
Q Consensus 197 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~--~l~~L~~L~L~~~~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~ 273 (632)
+|.+++.. ..++|++|++++|.++.++ .+++|++|++++|.++.++. .+..+++|++|++++|.+.+.+...
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 66655422 3366777777777666532 46778888888888887655 5557889999999999998876554
Q ss_pred hhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCC
Q 006752 274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL 353 (632)
Q Consensus 274 ~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 353 (632)
....+++|++|++++|.++..+....+++|++|++++|.+++..+. +... ++|++|++++|++++. +..+ ..+++|
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l-~~L~~L~L~~N~l~~l-~~~~-~~l~~L 239 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSA-AGVTWISLRNNKLVLI-EKAL-RFSQNL 239 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGG-TTCSEEECTTSCCCEE-CTTC-CCCTTC
T ss_pred HhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhh-hccc-CcccEEECcCCcccch-hhHh-hcCCCC
Confidence 4457899999999999999886666789999999999999876554 6666 8999999999999864 3333 678999
Q ss_pred cEEEccCCCCC-hHHHHHHhcCCCccEEEccC-CccccccCC
Q 006752 354 EILSLSGTQID-DYAISYMSMMPSLKFIDISN-TDIKGMYPS 393 (632)
Q Consensus 354 ~~L~L~~n~l~-~~~~~~l~~~~~L~~L~Ls~-n~i~~~~~~ 393 (632)
+.|++++|++. +..+..+..+++|+.+++++ +.+.+..|.
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 99999999998 78888899999999999984 445555443
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=8.8e-26 Score=227.88 Aligned_cols=232 Identities=16% Similarity=0.165 Sum_probs=184.9
Q ss_pred CCCCCcEEEccCCCCCCCC----CCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEe
Q 006752 210 MFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 285 (632)
Q Consensus 210 ~l~~L~~L~l~~n~l~~l~----~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 285 (632)
..+.++.|++++|.++.++ .+++|++|++++|.+..+|..+..+++|++|++++|.+..+|.. +..+++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~--l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS--IASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG--GGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH--HhcCcCCCEEE
Confidence 4588999999999999876 47999999999999999999999999999999999999977664 56899999999
Q ss_pred ccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCC
Q 006752 286 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 363 (632)
Q Consensus 286 ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 363 (632)
+++|.+.+. ..+.. ..+.+ .+..+ ++|++|++++|+++ ..+..+ +.+++|++|++++|++
T Consensus 157 L~~n~~~~~~p~~~~~------~~~~~---------~~~~l-~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------TDASG---------EHQGL-VNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEETTCCCCCSCSEE------EC-CC---------CEEES-TTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCC
T ss_pred CCCCCCccccChhHhh------ccchh---------hhccC-CCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCC
Confidence 999876544 22211 11111 01222 66777777777666 333333 6688888888888888
Q ss_pred ChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccch
Q 006752 364 DDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSL 443 (632)
Q Consensus 364 ~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~ 443 (632)
++. |..+..+++|++|++++|++.+.+|.
T Consensus 219 ~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~-------------------------------------------------- 247 (328)
T 4fcg_A 219 SAL-GPAIHHLPKLEELDLRGCTALRNYPP-------------------------------------------------- 247 (328)
T ss_dssp CCC-CGGGGGCTTCCEEECTTCTTCCBCCC--------------------------------------------------
T ss_pred CcC-chhhccCCCCCEEECcCCcchhhhHH--------------------------------------------------
Confidence 753 44588899999999999998888777
Q ss_pred HHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752 444 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 513 (632)
Q Consensus 444 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 513 (632)
.+.++++|++|++++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+.++++|+.+++..+.+...
T Consensus 248 -~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 248 -IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp -CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred -HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 356778999999999999988999999999999999999999999999999999999999988766543
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=9.5e-25 Score=236.95 Aligned_cols=268 Identities=18% Similarity=0.188 Sum_probs=153.9
Q ss_pred CcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEe
Q 006752 116 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 195 (632)
Q Consensus 116 ~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L 195 (632)
++++|++++| .++.. +..+. ++|++|++++|.++.. |. .+++|++|++++|.++.. |. .+++|++|++
T Consensus 41 ~l~~L~ls~n-~L~~l-p~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGES-GLTTL-PDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSS-CCSCC-CSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEE
T ss_pred CCcEEEecCC-CcCcc-ChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEEC
Confidence 4667777766 44422 22222 5666666666666532 21 345566666666655532 21 4455555555
Q ss_pred cCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhh
Q 006752 196 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLY 275 (632)
Q Consensus 196 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 275 (632)
++|.+++... .++ +|+.|++++|.++.+|.. +++|++|++++|.+.+++.
T Consensus 109 s~N~l~~l~~----~l~-------------------~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---- 158 (622)
T 3g06_A 109 FSNPLTHLPA----LPS-------------------GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---- 158 (622)
T ss_dssp CSCCCCCCCC----CCT-------------------TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----
T ss_pred cCCcCCCCCC----CCC-------------------CcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC----
Confidence 5555544221 334 445555555554444432 2455555555555554432
Q ss_pred hcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcE
Q 006752 276 IETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEI 355 (632)
Q Consensus 276 ~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 355 (632)
..++|+.|++++|.++.++ ..+++|+.|++++|.+++... ..++|+.|++++|.++... ..+++|++
T Consensus 159 -~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~l~-----~~~~~L~~ 225 (622)
T 3g06_A 159 -LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLP-----ALPSGLKE 225 (622)
T ss_dssp -CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCC-----CCCTTCCE
T ss_pred -ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCC-----ccchhhEEECcCCcccccC-----CCCCCCCE
Confidence 2345555555555555544 334566666666666654211 1256777777777666432 23467777
Q ss_pred EEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccc
Q 006752 356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGA 435 (632)
Q Consensus 356 L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 435 (632)
|++++|++++.. ..+++|+.|++++|.+++. |.
T Consensus 226 L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~l-p~------------------------------------------ 258 (622)
T 3g06_A 226 LIVSGNRLTSLP----VLPSELKELMVSGNRLTSL-PM------------------------------------------ 258 (622)
T ss_dssp EECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CC------------------------------------------
T ss_pred EEccCCccCcCC----CCCCcCcEEECCCCCCCcC-Cc------------------------------------------
Confidence 777777776532 4567777777777777653 32
Q ss_pred ccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCC
Q 006752 436 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS 498 (632)
Q Consensus 436 ~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 498 (632)
.+++|++|+|++|+++. +|..+..+++|+.|+|++|.+++..|..+..++
T Consensus 259 ------------~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 259 ------------LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp ------------CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred ------------ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 23567788888887774 567777778888888888888877777666544
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=228.85 Aligned_cols=243 Identities=18% Similarity=0.223 Sum_probs=186.0
Q ss_pred CcEEEccCCCCCCCCC--CCCCCEEECCCCcccchh-ccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCC
Q 006752 214 LSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 290 (632)
Q Consensus 214 L~~L~l~~n~l~~l~~--l~~L~~L~L~~~~l~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~ 290 (632)
.+.++..+..++.+|. .++++.|++++|.+..++ ..+..+++|++|++++|.+..++.. .+..+++|++|++++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG-AFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG-GGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh-hccCCccCCEEECCCCc
Confidence 3455666666666552 356777888887777655 4555778888888888887776543 45677888888888888
Q ss_pred CCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHH
Q 006752 291 LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 368 (632)
Q Consensus 291 l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 368 (632)
++.+ ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|...+..+...+..+++|++|++++|+++...
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhC-cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-
Confidence 8777 357788888888888888887666566666 888888888854333333322367888999999999887542
Q ss_pred HHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhc
Q 006752 369 SYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQN 448 (632)
Q Consensus 369 ~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~ 448 (632)
.+..+++|+.|++++|++++..|. .|.+
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~---------------------------------------------------~~~~ 229 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPG---------------------------------------------------SFQG 229 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTT---------------------------------------------------TTTT
T ss_pred -ccCCCcccCEEECCCCccCccChh---------------------------------------------------hhcc
Confidence 377888999999999998887665 4677
Q ss_pred CCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceec
Q 006752 449 LNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 511 (632)
Q Consensus 449 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~ 511 (632)
+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.
T Consensus 230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 889999999999999888888888999999999999999888888888999999999999875
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=3e-26 Score=229.97 Aligned_cols=246 Identities=19% Similarity=0.127 Sum_probs=164.0
Q ss_pred CCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCch--hhh-----hhhhcCCCccEEeccCCCCCch--hhh--hc
Q 006752 231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE--REA-----FLYIETSLLSFLDVSNSSLSRF--CFL--TQ 299 (632)
Q Consensus 231 ~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~-----~~~~~~~~L~~L~ls~n~l~~~--~~l--~~ 299 (632)
++|++|++++|.+ .+|..+... |+.|++++|.+... +.. ..+..+++|++|++++|.+++. ..+ ..
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 3455555555555 444443322 55555555555331 111 1122466777777777776643 222 67
Q ss_pred CCCCCeeeccCCCCCchHHHHHHhc----CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChH--HHHHH--
Q 006752 300 MKALEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY--AISYM-- 371 (632)
Q Consensus 300 ~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l-- 371 (632)
+++|++|++++|.+++. |..+..+ .++|++|++++|++++..+..+ +.+++|++|++++|++.+. .+..+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 77888888888887765 4444443 2678888888888877666555 5688888888888887765 23344
Q ss_pred hcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCc
Q 006752 372 SMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNH 451 (632)
Q Consensus 372 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~ 451 (632)
..+++|++|++++|++++...... ..+.++++
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~------------------------------------------------~~~~~l~~ 229 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCS------------------------------------------------ALAAARVQ 229 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHH------------------------------------------------HHHHTTCC
T ss_pred ccCCCCCEEECCCCcCcchHHHHH------------------------------------------------HHHhcCCC
Confidence 678888888888888774311000 23456788
Q ss_pred ccccccCccCCCCCcc-ccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecC
Q 006752 452 LERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 530 (632)
Q Consensus 452 L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~ 530 (632)
|++|++++|.+++..| ..+..+++|++|+|++|+++. +|..+. ++|++|++++|++++. |. +..+++|++|+++
T Consensus 230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLK 304 (312)
T ss_dssp CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECT
T ss_pred CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEecc
Confidence 8888888888888664 445567888888888888885 555554 7888888888888886 55 7788888888888
Q ss_pred CCcc
Q 006752 531 GGWL 534 (632)
Q Consensus 531 ~N~l 534 (632)
+|++
T Consensus 305 ~N~l 308 (312)
T 1wwl_A 305 GNPF 308 (312)
T ss_dssp TCTT
T ss_pred CCCC
Confidence 8887
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=1.6e-24 Score=229.44 Aligned_cols=243 Identities=19% Similarity=0.201 Sum_probs=171.2
Q ss_pred cEEEccCCCCCCCCC--CCCCCEEECCCCcccchh-ccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCC
Q 006752 215 SFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL 291 (632)
Q Consensus 215 ~~L~l~~n~l~~l~~--l~~L~~L~L~~~~l~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l 291 (632)
..++.++..++.+|. .+++++|++++|.+..++ ..+..+++|++|++++|.+.++++. .+..+++|++|++++|.+
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG-AFNGLASLNTLELFDNWL 135 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCC
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh-hccCcccCCEEECCCCcC
Confidence 445555555555542 256777777777776553 4455677777777777777665433 345677777777777777
Q ss_pred Cch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHH
Q 006752 292 SRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 369 (632)
Q Consensus 292 ~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 369 (632)
+.+ ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|...+..+...+..+++|++|++++|++++..
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-- 212 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV-PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-- 212 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcC-CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--
Confidence 766 346677777888888777776555555555 778888887754333333222356788888888888877542
Q ss_pred HHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcC
Q 006752 370 YMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNL 449 (632)
Q Consensus 370 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l 449 (632)
.+..+++|+.|++++|.+++..|. .|.++
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~---------------------------------------------------~~~~l 241 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPG---------------------------------------------------SFHGL 241 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGG---------------------------------------------------GGTTC
T ss_pred cccccccccEEECcCCcCcccCcc---------------------------------------------------cccCc
Confidence 366788888888888888876555 46677
Q ss_pred CcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752 450 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 450 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 512 (632)
++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.-
T Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 888888888888888778888888888888888888888777778888888888888887653
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=5.8e-25 Score=233.96 Aligned_cols=227 Identities=18% Similarity=0.200 Sum_probs=184.9
Q ss_pred CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEE
Q 006752 252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL 331 (632)
Q Consensus 252 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 331 (632)
.+++|++|++++|.+.++++. .+..+++|++|++++|.+++...+..+++|++|++++|.+++..+ . ++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-----~-~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----G-PSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE-----C-TTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC-----C-CCcCEE
Confidence 344788888888887776543 456778888888888888777558888899999999988876442 2 789999
Q ss_pred EccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhc
Q 006752 332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNL 411 (632)
Q Consensus 332 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~ 411 (632)
++++|.+++..+ ..+++|++|++++|.+++..+..++.+++|++|++++|.+++..|..+
T Consensus 105 ~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---------------- 164 (487)
T 3oja_A 105 HAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---------------- 164 (487)
T ss_dssp ECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG----------------
T ss_pred ECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH----------------
Confidence 999999887655 347899999999999999888888999999999999999998766632
Q ss_pred eeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcch
Q 006752 412 FLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 491 (632)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 491 (632)
...+++|++|+|++|.+++.. .+..+++|+.|+|++|.+++.+|
T Consensus 165 ----------------------------------~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~ 208 (487)
T 3oja_A 165 ----------------------------------AASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP 208 (487)
T ss_dssp ----------------------------------GGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG
T ss_pred ----------------------------------hhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH
Confidence 236789999999999999863 23468999999999999999655
Q ss_pred hhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHH
Q 006752 492 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF 543 (632)
Q Consensus 492 ~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~ 543 (632)
.+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.|++.+..+
T Consensus 209 -~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 209 -EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp -GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred -hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 48899999999999999998 477788899999999999998766655433
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=4.3e-26 Score=228.87 Aligned_cols=253 Identities=19% Similarity=0.192 Sum_probs=161.2
Q ss_pred ccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhcccc-------CCCCC
Q 006752 184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNE-------NKAPL 256 (632)
Q Consensus 184 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~-------~~~~L 256 (632)
++..++|++|++++|.+ .+|..+... |+.|++++|.+... .++..+. .+++|
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~-----------------~~~~~~~~~~~~~~~l~~L 97 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAA-----------------RIPSRILFGALRVLGISGL 97 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEE-----------------ECBHHHHHHHHHHHTTSCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCC-----------------CcCHHHHHHHHHhcCcCCc
Confidence 34456677777777777 344444332 55555555544321 1222221 34444
Q ss_pred cEEEeeCCCCCch-hhhhhhhcCCCccEEeccCCCCCch-hhhhcC-----CCCCeeeccCCCCCchHHHHHHhcCCCCc
Q 006752 257 AKISLAGTTFINE-REAFLYIETSLLSFLDVSNSSLSRF-CFLTQM-----KALEHLDLSSSMIGDDSVEMVACVGANLR 329 (632)
Q Consensus 257 ~~L~l~~n~~~~~-~~~~~~~~~~~L~~L~ls~n~l~~~-~~l~~~-----~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 329 (632)
++|++++|.+.+. +..+.+..+++|++|++++|.+++. ..+..+ ++|++|++++|++++..+..+..+ ++|+
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l-~~L~ 176 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF-PALS 176 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC-SSCC
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC-CCCC
Confidence 4444444444432 2111113444555555555544443 222222 667777777777766555555555 6777
Q ss_pred EEEccCCcCcchh--HHHH-HhcCCCCcEEEccCCCCCh---HHHHHHhcCCCccEEEccCCccccccCCCccchhhhhh
Q 006752 330 NLNLSNTRFSSAG--VGIL-AGHLPNLEILSLSGTQIDD---YAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAY 403 (632)
Q Consensus 330 ~L~l~~n~l~~~~--~~~~-~~~~~~L~~L~L~~n~l~~---~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 403 (632)
+|++++|++.+.. +..+ ++.+++|++|++++|++++ .....+..+++|++|++++|++++..|..
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------- 247 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP--------- 247 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS---------
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh---------
Confidence 7777777766542 2221 2567889999999998883 33344568899999999999998876542
Q ss_pred hhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCccccccccccc
Q 006752 404 CFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 483 (632)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 483 (632)
.+..+++|++|++++|.++. +|..+. ++|++|+|++
T Consensus 248 -----------------------------------------~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~ 283 (312)
T 1wwl_A 248 -----------------------------------------SCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSY 283 (312)
T ss_dssp -----------------------------------------CCCCCTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCS
T ss_pred -----------------------------------------hhhhcCCCCEEECCCCccCh-hhhhcc--CCceEEECCC
Confidence 24456899999999999984 677665 8999999999
Q ss_pred ccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752 484 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 513 (632)
Q Consensus 484 n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 513 (632)
|++++. |. +..+++|++|++++|++++.
T Consensus 284 N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 284 NRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 999986 55 88999999999999998863
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.1e-25 Score=239.67 Aligned_cols=235 Identities=20% Similarity=0.252 Sum_probs=131.5
Q ss_pred CCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCccc
Q 006752 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTID 244 (632)
Q Consensus 165 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~ 244 (632)
+|++|++++|.+.+..|..|+.+++|++|++++|.+++..+ +..+++ |++|++++|.++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~-------------------L~~L~Ls~N~l~ 93 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLST-------------------LRTLDLNNNYVQ 93 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTT-------------------CCEEECCSSEEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCC-------------------CCEEEecCCcCC
Confidence 56666666666555555555556666666666665554433 444444 444444444444
Q ss_pred chhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhc
Q 006752 245 SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACV 324 (632)
Q Consensus 245 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 324 (632)
+++.. ++|++|++++|.+.+++.. .+ ++|++|++++|.+++..+..+..+
T Consensus 94 ~l~~~----~~L~~L~L~~N~l~~~~~~----~l----------------------~~L~~L~L~~N~l~~~~~~~~~~l 143 (487)
T 3oja_A 94 ELLVG----PSIETLHAANNNISRVSCS----RG----------------------QGKKNIYLANNKITMLRDLDEGCR 143 (487)
T ss_dssp EEEEC----TTCCEEECCSSCCCCEEEC----CC----------------------SSCEEEECCSSCCCSGGGBCGGGG
T ss_pred CCCCC----CCcCEEECcCCcCCCCCcc----cc----------------------CCCCEEECCCCCCCCCCchhhcCC
Confidence 33321 3444444444444433221 12 334444444444444333333333
Q ss_pred CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhh
Q 006752 325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYC 404 (632)
Q Consensus 325 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 404 (632)
++|++|++++|.+++..+..+.+.+++|++|++++|.+++..+ ...+++|++|++++|.+++..|.
T Consensus 144 -~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~----------- 209 (487)
T 3oja_A 144 -SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE----------- 209 (487)
T ss_dssp -SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-----------
T ss_pred -CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-----------
Confidence 5555555555555554444443345666666666666655422 23466777777777777764222
Q ss_pred hhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccc
Q 006752 405 FMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 484 (632)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 484 (632)
+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|
T Consensus 210 -----------------------------------------~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 210 -----------------------------------------FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp -----------------------------------------GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred -----------------------------------------HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence 4456677777777777776 5666777777777777777
Q ss_pred cCC-CcchhhhccCCCCcEEeec
Q 006752 485 SLT-DVSLHQLSSLSKLTNLSIR 506 (632)
Q Consensus 485 ~l~-~~~~~~~~~l~~L~~L~ls 506 (632)
.+. +..|.++..++.|+.++++
T Consensus 248 ~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcCcchHHHHHhCCCCcEEecc
Confidence 777 5566677777777777775
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.1e-24 Score=214.70 Aligned_cols=206 Identities=20% Similarity=0.232 Sum_probs=157.0
Q ss_pred CccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEE
Q 006752 280 LLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357 (632)
Q Consensus 280 ~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 357 (632)
++++|++++|.++.. ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|++++..+..+ ..+++|++|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAF-SGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTT-TTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCC-cCCCEEECCCCccCccChhhh-cCCccccEEE
Confidence 455555555555544 245566667777777766665555555555 677777777777776655544 5678888888
Q ss_pred ccCCCCChHHHHHHhcCCCccEEEccCCccccc-cCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccc
Q 006752 358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGM-YPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAE 436 (632)
Q Consensus 358 L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 436 (632)
+++|.+++..+..++.+++|++|++++|.+++. +|.
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~------------------------------------------- 143 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE------------------------------------------- 143 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-------------------------------------------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCch-------------------------------------------
Confidence 888888776665678888999999999988764 244
Q ss_pred cccccchHHhhcCCcccccccCccCCCCCccccccCccccc----ccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752 437 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI----HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 437 ~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 512 (632)
.+.++++|++|++++|++++..+..+..+++|+ .|++++|++++..+..+.. .+|+.|++++|++++
T Consensus 144 --------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 144 --------YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKS 214 (276)
T ss_dssp --------GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSC
T ss_pred --------hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceee
Confidence 567788999999999999987777888888777 8899999999876655554 589999999999999
Q ss_pred CCCCCCCCCCCcceEecCCCcccChHH
Q 006752 513 SGLGSFKPPRSLKLLDLHGGWLLTEDA 539 (632)
Q Consensus 513 ~~~~~l~~~~~L~~L~l~~N~l~~~~~ 539 (632)
..+..|..+++|+.|++++|++.|+|.
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cCHhHhcccccccEEEccCCcccccCC
Confidence 877788899999999999999988874
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=6.2e-24 Score=208.47 Aligned_cols=205 Identities=20% Similarity=0.279 Sum_probs=163.4
Q ss_pred ccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccC
Q 006752 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360 (632)
Q Consensus 281 L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~ 360 (632)
.+.++++++.++.++. .-.+++++|++++|.+++..+..+..+ ++|++|++++|+++......+ ..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRL-TKLRLLYLNDNKLQTLPAGIF-KELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSC-TTCCEEECCSSCCSCCCTTTT-SSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCC-CCCCEEECCCCccCeeChhhh-cCCCCCCEEECCC
Confidence 4555555555555421 112456677777766665554455555 677777777777765544433 5688899999999
Q ss_pred CCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccc
Q 006752 361 TQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLV 440 (632)
Q Consensus 361 n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l 440 (632)
|++++..+..+..+++|++|++++|.+++..+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------------------------------- 127 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR----------------------------------------------- 127 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT-----------------------------------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHH-----------------------------------------------
Confidence 988877777788899999999999999887554
Q ss_pred cchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCC
Q 006752 441 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP 520 (632)
Q Consensus 441 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~ 520 (632)
.|.++++|++|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|++++..+..|..
T Consensus 128 ----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 128 ----VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp ----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ----HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 4677899999999999999977777899999999999999999988888999999999999999999988888999
Q ss_pred CCCcceEecCCCcccChHH
Q 006752 521 PRSLKLLDLHGGWLLTEDA 539 (632)
Q Consensus 521 ~~~L~~L~l~~N~l~~~~~ 539 (632)
+++|+.|++++|++.|+|.
T Consensus 204 l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 204 LEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTCCEEECCSSCBCCSSS
T ss_pred ccCCCEEEecCCCeeCCCc
Confidence 9999999999999988774
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.1e-23 Score=208.45 Aligned_cols=213 Identities=24% Similarity=0.260 Sum_probs=167.0
Q ss_pred cCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEE
Q 006752 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356 (632)
Q Consensus 277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 356 (632)
.++++++++++++.++.++.- -.++++.|++++|.+++..+..+..+ ++|++|++++|.+++.... +.+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~---~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVD---GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEECC---SCCTTCCEE
T ss_pred ccCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCCccCcccCC---CCCCcCCEE
Confidence 344555555555555544211 12566777777777766655556555 7777777777777664432 468889999
Q ss_pred EccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccc
Q 006752 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAE 436 (632)
Q Consensus 357 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 436 (632)
++++|+++. +|..+..+++|++|++++|++++..+.
T Consensus 83 ~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~------------------------------------------- 118 (290)
T 1p9a_G 83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLG------------------------------------------- 118 (290)
T ss_dssp ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSS-------------------------------------------
T ss_pred ECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHH-------------------------------------------
Confidence 999998873 455678899999999999999987555
Q ss_pred cccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCC
Q 006752 437 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG 516 (632)
Q Consensus 437 ~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~ 516 (632)
.|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+++.. |.
T Consensus 119 --------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~ 189 (290)
T 1p9a_G 119 --------ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PK 189 (290)
T ss_dssp --------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CT
T ss_pred --------HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-Ch
Confidence 467889999999999999998888889999999999999999998888889999999999999999964 77
Q ss_pred CCCCCCCcceEecCCCcccChHHHHHHHHHc
Q 006752 517 SFKPPRSLKLLDLHGGWLLTEDAILQFCKMH 547 (632)
Q Consensus 517 ~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~ 547 (632)
.+....+|+.+++++|++.|+|.+.++.++.
T Consensus 190 ~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl 220 (290)
T 1p9a_G 190 GFFGSHLLPFAFLHGNPWLCNCEILYFRRWL 220 (290)
T ss_dssp TTTTTCCCSEEECCSCCBCCSGGGHHHHHHH
T ss_pred hhcccccCCeEEeCCCCccCcCccHHHHHHH
Confidence 7777889999999999999999776666554
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.1e-24 Score=213.93 Aligned_cols=230 Identities=17% Similarity=0.190 Sum_probs=187.6
Q ss_pred CCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEc
Q 006752 279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 358 (632)
Q Consensus 279 ~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L 358 (632)
..+..+++.++.+........+++|+.|++++|.+.+.. .+..+ ++|++|++++|.+++.. .+ +.+++|++|++
T Consensus 19 ~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~l~~l-~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVRYLALGGNKLHDIS--AL-KELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT--TGGGC-TTCCEEECTTSCCCCCG--GG-TTCTTCCEEEC
T ss_pred HHHHHHHhcCcccccccccccccceeeeeeCCCCccccc--ccccC-CCCcEEECCCCCCCCch--hh-cCCCCCCEEEC
Confidence 445556667777766666677788888888888776432 34444 88888888888887742 23 67899999999
Q ss_pred cCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccc
Q 006752 359 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETD 438 (632)
Q Consensus 359 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 438 (632)
++|.+++..+..+..+++|++|++++|++++..+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------------------------------- 127 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG--------------------------------------------- 127 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT---------------------------------------------
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHH---------------------------------------------
Confidence 99999988777788999999999999999876554
Q ss_pred cccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCC
Q 006752 439 LVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 518 (632)
Q Consensus 439 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l 518 (632)
.+.++++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+
T Consensus 128 ------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (272)
T 3rfs_A 128 ------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201 (272)
T ss_dssp ------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ------HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence 46778999999999999999877788999999999999999999888889999999999999999999888889
Q ss_pred CCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCCCcchhhhhh
Q 006752 519 KPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL 581 (632)
Q Consensus 519 ~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip~~~~~~~~~ 581 (632)
..+++|++|++++|++.+.+. . ....+.+.|.++|.+|..++.+...
T Consensus 202 ~~l~~L~~L~l~~N~~~~~~~---------~-------l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 202 DRLTSLQYIWLHDNPWDCTCP---------G-------IRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp TTCTTCCEEECCSSCBCCCTT---------T-------THHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred hCCcCCCEEEccCCCccccCc---------H-------HHHHHHHHHhCCCcccCcccccCCC
Confidence 999999999999999866432 1 2333455678899999999888765
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.1e-23 Score=218.35 Aligned_cols=256 Identities=17% Similarity=0.205 Sum_probs=162.5
Q ss_pred chhccccCCCCCcEEEeeCCCCCchhhhh---hhhcCCCccEEeccCCCCCch------------hhhhcCCCCCeeecc
Q 006752 245 SILEGNENKAPLAKISLAGTTFINEREAF---LYIETSLLSFLDVSNSSLSRF------------CFLTQMKALEHLDLS 309 (632)
Q Consensus 245 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~~~~~L~~L~ls~n~l~~~------------~~l~~~~~L~~L~l~ 309 (632)
.++..+..+++|++|++++|.+....... .+..+++|++|++++|.+..+ ..+..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 34444445555555555555554432211 133455666666666543311 234567788888888
Q ss_pred CCCCCc----hHHHHHHhcCCCCcEEEccCCcCcchhHHHHHh---cC---------CCCcEEEccCCCCCh-HHH---H
Q 006752 310 SSMIGD----DSVEMVACVGANLRNLNLSNTRFSSAGVGILAG---HL---------PNLEILSLSGTQIDD-YAI---S 369 (632)
Q Consensus 310 ~n~l~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---~~---------~~L~~L~L~~n~l~~-~~~---~ 369 (632)
+|.+++ ..+..+..+ ++|++|++++|.+++..+..+.. .+ ++|++|++++|++++ ..+ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhC-CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 888776 355556555 78888888888876655444322 22 788888888888873 333 3
Q ss_pred HHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchH-Hhhc
Q 006752 370 YMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLT-ALQN 448 (632)
Q Consensus 370 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~l~~ 448 (632)
.+..+++|++|++++|+++......+ .+ .+..
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l-----------------------------------------------~~~~l~~ 214 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHL-----------------------------------------------LLEGLAY 214 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHH-----------------------------------------------HHTTGGG
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHH-----------------------------------------------HHHHhhc
Confidence 56678888888888887763200000 01 4567
Q ss_pred CCcccccccCccCCC----CCccccccCcccccccccccccCCCc----chhhhcc--CCCCcEEeecCceecc----CC
Q 006752 449 LNHLERLNLEQTQVS----DATLFPLSTFKELIHLSLRNASLTDV----SLHQLSS--LSKLTNLSIRDAVLTN----SG 514 (632)
Q Consensus 449 l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~--l~~L~~L~ls~N~l~~----~~ 514 (632)
+++|++|+|++|.++ ..+|..+..+++|++|+|++|.+++. ++..+.. +++|+.|++++|++++ .+
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 788888888888886 44666777788888888888888876 3455533 7888888888888887 35
Q ss_pred CCCC-CCCCCcceEecCCCcccChHH-HHHHHHHcC
Q 006752 515 LGSF-KPPRSLKLLDLHGGWLLTEDA-ILQFCKMHP 548 (632)
Q Consensus 515 ~~~l-~~~~~L~~L~l~~N~l~~~~~-~~~~~~~~~ 548 (632)
|..+ .++++|++|++++|++..... ...+...++
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~ 330 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 330 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhh
Confidence 6555 457888888888888743332 344444443
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1e-22 Score=211.01 Aligned_cols=252 Identities=17% Similarity=0.111 Sum_probs=152.1
Q ss_pred HHhccCCCccEEEcCCCCCCCchhHHh----hhCCCCcCEEeccCC--CCCChhhHhh-------hcCCCCccEEEccCC
Q 006752 84 AYLGAFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRC--VKVTDAGMKH-------LLSISTLEKLWLSET 150 (632)
Q Consensus 84 ~~~~~~~~L~~L~L~~~~~i~~~~~~~----l~~l~~L~~L~L~~~--~~l~~~~~~~-------l~~l~~L~~L~L~~n 150 (632)
..+..+++|++|+|++|. ++...+.. +.++++|++|+|++| ..+++..+.. +..+++|++|+|++|
T Consensus 26 ~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 445667778888888776 66665544 446778888888776 1222222222 356777788888877
Q ss_pred CCCH----hHHHHhcCCCCCCEEEcCCCCCChHHHHhcc----CC---------CCccEEEecCCCCCc-hhh---Hhhc
Q 006752 151 GLTA----DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ----VL---------TKLEYLDLWGSQVSN-RGA---AVLK 209 (632)
Q Consensus 151 ~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~----~l---------~~L~~L~L~~n~l~~-~~~---~~l~ 209 (632)
.++. ..+..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|.+++ ..+ ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 7776 4556677777888888888777655444433 23 777777777777763 233 3455
Q ss_pred CCCCCcEEEccCCCCC----------CCCCCCCCCEEECCCCccc-----chhccccCCCCCcEEEeeCCCCCchhhhhh
Q 006752 210 MFPRLSFLNLAWTGVT----------KLPNISSLECLNLSNCTID-----SILEGNENKAPLAKISLAGTTFINEREAFL 274 (632)
Q Consensus 210 ~l~~L~~L~l~~n~l~----------~l~~l~~L~~L~L~~~~l~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 274 (632)
.+++|++|++++|.++ .+..+++|++|++++|.++ .++..+.
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~----------------------- 241 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK----------------------- 241 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-----------------------
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-----------------------
Confidence 5666666666666554 2333444444444444442 2333333
Q ss_pred hhcCCCccEEeccCCCCCch------hhhh--cCCCCCeeeccCCCCCc----hHHHHHHhcCCCCcEEEccCCcCcchh
Q 006752 275 YIETSLLSFLDVSNSSLSRF------CFLT--QMKALEHLDLSSSMIGD----DSVEMVACVGANLRNLNLSNTRFSSAG 342 (632)
Q Consensus 275 ~~~~~~L~~L~ls~n~l~~~------~~l~--~~~~L~~L~l~~n~l~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~ 342 (632)
.+++|++|++++|.++.. ..+. .+++|++|++++|.+++ ..+..+...+++|++|++++|++++..
T Consensus 242 --~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 242 --SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp --GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred --cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 455555555555555443 2332 26778888888888876 355555333378888888888887766
Q ss_pred H--HHHHhcCCCCcEEEccCC
Q 006752 343 V--GILAGHLPNLEILSLSGT 361 (632)
Q Consensus 343 ~--~~~~~~~~~L~~L~L~~n 361 (632)
+ ..+...+++++.+++...
T Consensus 320 ~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 320 DVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHHHHHHHHTCCEECCC
T ss_pred hHHHHHHHHhhhcCcchhhhc
Confidence 3 455455555555555443
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.7e-22 Score=205.15 Aligned_cols=256 Identities=20% Similarity=0.230 Sum_probs=161.5
Q ss_pred CCccEEEecCCCCCchhhHhhcCC--CCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCC
Q 006752 188 TKLEYLDLWGSQVSNRGAAVLKMF--PRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 265 (632)
Q Consensus 188 ~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~ 265 (632)
..++.++++++.+. +..+..+ ++++.+++++ |.+.+.+..++.+++|++|++++|.
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~-------------------n~l~~~~~~~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPR-------------------SFMDQPLAEHFSPFRVQHMDLSNSV 104 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTT-------------------CEECSCCCSCCCCBCCCEEECTTCE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCC-------------------ccccccchhhccCCCCCEEEccCCC
Confidence 34778888887766 3334443 4555555554 4444444444555666666666666
Q ss_pred CCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCC-CCCch-HHHHHHhcCCCCcEEEccCC-cCcc
Q 006752 266 FINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS-MIGDD-SVEMVACVGANLRNLNLSNT-RFSS 340 (632)
Q Consensus 266 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~~~L~~L~l~~n-~l~~ 340 (632)
+.+......+..+++|++|++++|.+++. ..+..+++|++|++++| .+++. .+..+..+ ++|++|++++| .+++
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~-~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC-SRLDELNLSWCFDFTE 183 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC-TTCCEEECCCCTTCCH
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC-CCCCEEcCCCCCCcCh
Confidence 54432222344566677777766666543 45666778888888887 57664 33334444 78888888888 7776
Q ss_pred hhHHHHHhcCC-CCcEEEccCC--CCC-hHHHHHHhcCCCccEEEccCCc-cccccCCCccchhhhhhhhhhhhhceecc
Q 006752 341 AGVGILAGHLP-NLEILSLSGT--QID-DYAISYMSMMPSLKFIDISNTD-IKGMYPSGQMNVFFSAYCFMIVYNLFLHA 415 (632)
Q Consensus 341 ~~~~~~~~~~~-~L~~L~L~~n--~l~-~~~~~~l~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (632)
......+..++ +|++|++++| .++ +..+..+..+++|++|++++|. +++..+.
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~---------------------- 241 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ---------------------- 241 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG----------------------
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH----------------------
Confidence 54444446778 8888888887 565 4456666778888888888887 5544333
Q ss_pred ccccccccccccchhhhcccccccccchHHhhcCCcccccccCcc-CCCCCccccccCcccccccccccccCCCcchhhh
Q 006752 416 YGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT-QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL 494 (632)
Q Consensus 416 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 494 (632)
.+..+++|++|++++| .++......++.+++|+.|++++| ++......+
T Consensus 242 -----------------------------~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l 291 (336)
T 2ast_B 242 -----------------------------EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL 291 (336)
T ss_dssp -----------------------------GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHH
T ss_pred -----------------------------HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHH
Confidence 3566678888888887 444433345677888888888888 444322222
Q ss_pred ccCCCCcEEeecCceeccCCCCCCCC
Q 006752 495 SSLSKLTNLSIRDAVLTNSGLGSFKP 520 (632)
Q Consensus 495 ~~l~~L~~L~ls~N~l~~~~~~~l~~ 520 (632)
. .+|+.|++++|++++..|..+..
T Consensus 292 ~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 292 K--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp H--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred H--hhCcceEEecccCccccCCcccc
Confidence 2 23666668888888877776653
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=5.7e-23 Score=210.70 Aligned_cols=255 Identities=16% Similarity=0.176 Sum_probs=181.1
Q ss_pred EEECCCCcccch-hccccCCCCCcEEEeeCCCCCchhhh---hhhhcCC-CccEEeccCCCCCch--hhhhcC-----CC
Q 006752 235 CLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFINEREA---FLYIETS-LLSFLDVSNSSLSRF--CFLTQM-----KA 302 (632)
Q Consensus 235 ~L~L~~~~l~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~-~L~~L~ls~n~l~~~--~~l~~~-----~~ 302 (632)
.++++.|.+++. |..+...++|++|++++|.+.+.+.. ..+..++ +|++|++++|.++.. ..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 356677777743 33334455588888888887765431 2344566 788888888888764 334433 88
Q ss_pred CCeeeccCCCCCchHHHHHHhc----CCCCcEEEccCCcCcchhHHHHHhc----CCCCcEEEccCCCCChH----HHHH
Q 006752 303 LEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVGILAGH----LPNLEILSLSGTQIDDY----AISY 370 (632)
Q Consensus 303 L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~~----~~~~ 370 (632)
|++|++++|.+++..+..+... .++|++|++++|++++..+..+... +++|++|++++|.+++. .+..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999998887776655443 1689999999999888776655332 46899999999988853 3444
Q ss_pred HhcCC-CccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcC
Q 006752 371 MSMMP-SLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNL 449 (632)
Q Consensus 371 l~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l 449 (632)
+...+ +|++|++++|++++..+..+. ..+..+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~-----------------------------------------------~~l~~~ 194 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELA-----------------------------------------------KFLASI 194 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHH-----------------------------------------------HHHHTS
T ss_pred HhcCCccccEeeecCCCCchhhHHHHH-----------------------------------------------HHHHhC
Confidence 55565 899999999988876554221 145556
Q ss_pred -CcccccccCccCCCCCccc----cccC-cccccccccccccCCCcchh----hhccCCCCcEEeecCceeccCC-----
Q 006752 450 -NHLERLNLEQTQVSDATLF----PLST-FKELIHLSLRNASLTDVSLH----QLSSLSKLTNLSIRDAVLTNSG----- 514 (632)
Q Consensus 450 -~~L~~L~Ls~n~l~~~~~~----~l~~-l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~ls~N~l~~~~----- 514 (632)
++|++|+|++|.+++.... .+.. .++|++|+|++|.+++..+. .+..+++|++|++++|.+.+..
T Consensus 195 ~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred CCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 4899999999998875333 3444 35899999999999886653 3466789999999999855443
Q ss_pred --CCCCCCCCCcceEecCCCcccC
Q 006752 515 --LGSFKPPRSLKLLDLHGGWLLT 536 (632)
Q Consensus 515 --~~~l~~~~~L~~L~l~~N~l~~ 536 (632)
+..+..+++|+.||+++|++..
T Consensus 275 ~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHhccCCceEEEecCCCcCCC
Confidence 3467778899999999999733
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.2e-22 Score=206.22 Aligned_cols=235 Identities=19% Similarity=0.222 Sum_probs=143.6
Q ss_pred CCccEEeccCCCCCch-hhhhcCCCCCeeeccCCCCCch-HHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEE
Q 006752 279 SLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356 (632)
Q Consensus 279 ~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 356 (632)
+.++.+++++|.+.+. ..+..+++|++|++++|.+++. .+..+..+ ++|++|++++|.+++..+..+ +.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC-SKLQNLSLEGLRLSDPIVNTL-AKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTB-CCCSEEECTTCBCCHHHHHHH-TTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhC-CCCCEEeCcCcccCHHHHHHH-hcCCCCCEE
Confidence 4555555555555444 3344566666666766666654 34444444 667777777776666656555 446677777
Q ss_pred EccCC-CCChH-HHHHHhcCCCccEEEccCC-ccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhc
Q 006752 357 SLSGT-QIDDY-AISYMSMMPSLKFIDISNT-DIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQV 433 (632)
Q Consensus 357 ~L~~n-~l~~~-~~~~l~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 433 (632)
++++| .+++. .+..+..+++|++|++++| .+++....
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~---------------------------------------- 187 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ---------------------------------------- 187 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH----------------------------------------
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH----------------------------------------
Confidence 77776 56653 4445666677777777766 55542100
Q ss_pred ccccccccchHHhhcCC-cccccccCcc--CCC-CCccccccCccccccccccccc-CCCcchhhhccCCCCcEEeecCc
Q 006752 434 GAETDLVLSLTALQNLN-HLERLNLEQT--QVS-DATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSSLSKLTNLSIRDA 508 (632)
Q Consensus 434 ~~~~~~l~~~~~l~~l~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ls~N 508 (632)
..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 188 ----------~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 188 ----------VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp ----------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred ----------HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 1355566 6777777776 444 3344455566777777777776 56556666777777777777777
Q ss_pred e-eccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCCCcchh
Q 006752 509 V-LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSL 577 (632)
Q Consensus 509 ~-l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip~~~~~ 577 (632)
. ++......+..+++|+.|++++| ++...+..+.+..+.++ ++.|+++|..|..++.
T Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~----------l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 258 YDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ----------INCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE----------ESCCCSCCTTCSSCSS
T ss_pred CCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHHhhCcceE----------EecccCccccCCcccc
Confidence 3 33322234666777788888777 35555556666666554 4577788888887765
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=6.8e-23 Score=201.89 Aligned_cols=223 Identities=17% Similarity=0.207 Sum_probs=164.3
Q ss_pred EECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCC
Q 006752 236 LNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMI 313 (632)
Q Consensus 236 L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l 313 (632)
.+..+..+..+|..+. ++|++|++++|.+.+++.. .+..+++|++|++++|.++.. ..+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 3444444445554432 3566666666666555432 344566777777777777665 3567778888888888888
Q ss_pred CchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChH-HHHHHhcCCCccEEEccCCccccccC
Q 006752 314 GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY-AISYMSMMPSLKFIDISNTDIKGMYP 392 (632)
Q Consensus 314 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~Ls~n~i~~~~~ 392 (632)
++..+..+..+ ++|++|++++|.+.+..+..+ +.+++|++|++++|.+++. .|..+..+++|++|++++|++++..+
T Consensus 89 ~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 89 QSLALGAFSGL-SSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CEECTTTTTTC-TTCCEEECTTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CccChhhhcCC-ccccEEECCCCCccccCchhc-ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 77666666666 888888888888876554343 6789999999999998874 47789999999999999999998755
Q ss_pred CCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCccc-ccccCccCCCCCcccccc
Q 006752 393 SGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLE-RLNLEQTQVSDATLFPLS 471 (632)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~l~ 471 (632)
..+ ..+..++.|. +|++++|.+++..+..+.
T Consensus 167 ~~~------------------------------------------------~~l~~L~~l~l~L~ls~n~l~~~~~~~~~ 198 (276)
T 2z62_A 167 TDL------------------------------------------------RVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (276)
T ss_dssp GGG------------------------------------------------HHHHTCTTCCEEEECCSSCCCEECTTSSC
T ss_pred HHh------------------------------------------------hhhhhccccceeeecCCCcccccCccccC
Confidence 422 2334444444 899999999986665554
Q ss_pred CcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752 472 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 472 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 512 (632)
..+|+.|++++|++++..+..|..+++|+.|++++|+++.
T Consensus 199 -~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 199 -EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp -SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred -CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 4589999999999999888888999999999999999885
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=5.9e-23 Score=201.63 Aligned_cols=195 Identities=16% Similarity=0.226 Sum_probs=103.6
Q ss_pred CCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEE
Q 006752 278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357 (632)
Q Consensus 278 ~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 357 (632)
+++|+.|++++|.+...+.+..+++|++|++++|.+++. ..+..+ ++|++|++++|.+++..+..+ +.+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKEL-TNLTYLILTGNQLQSLPNGVF-DKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCC-CCCCEEECCCCccCccChhHh-cCCcCCCEEE
Confidence 444555555555555444455555555555555555442 123333 555555555555554433332 3455566666
Q ss_pred ccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccc
Q 006752 358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAET 437 (632)
Q Consensus 358 L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 437 (632)
+++|++++..+..+..+++|++|++++|.+++..+.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------------------------------------- 151 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-------------------------------------------- 151 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------------------------------------------
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH--------------------------------------------
Confidence 655555555444455555666666666655544332
Q ss_pred ccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCC
Q 006752 438 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGS 517 (632)
Q Consensus 438 ~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 517 (632)
.+..+++|++|++++|.+++..+..++.+++|++|++++|++++..+..+..+++|++|++++|++.+.
T Consensus 152 -------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~---- 220 (272)
T 3rfs_A 152 -------VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT---- 220 (272)
T ss_dssp -------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----
T ss_pred -------HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----
Confidence 234455566666666666555444455556666666666666655555555566666666666655432
Q ss_pred CCCCCCcceEecCCCcc
Q 006752 518 FKPPRSLKLLDLHGGWL 534 (632)
Q Consensus 518 l~~~~~L~~L~l~~N~l 534 (632)
++.|+.++++.|.+
T Consensus 221 ---~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 221 ---CPGIRYLSEWINKH 234 (272)
T ss_dssp ---TTTTHHHHHHHHHT
T ss_pred ---CcHHHHHHHHHHhC
Confidence 33455555555554
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=3.5e-22 Score=204.83 Aligned_cols=251 Identities=15% Similarity=0.156 Sum_probs=151.4
Q ss_pred EeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhH----HhhhCCC-CcCEEeccCCCCCChhhHhhhcCC-----
Q 006752 70 IELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSAL----WALTGMT-CLKELDLSRCVKVTDAGMKHLLSI----- 139 (632)
Q Consensus 70 L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~----~~l~~l~-~L~~L~L~~~~~l~~~~~~~l~~l----- 139 (632)
+++++| .+++.++..+...++|++|++++|. +++..+ .++.+++ +|++|++++| .+++..+..+..+
T Consensus 3 ~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCC-TTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSC
T ss_pred cccccc-cchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccC
Confidence 567777 4667777777777778888888888 777666 6677787 8888888888 6777666666553
Q ss_pred CCccEEEccCCCCCHhHHHH----hcCC-CCCCEEEcCCCCCChHHHHhc----cC-CCCccEEEecCCCCCchhh----
Q 006752 140 STLEKLWLSETGLTADGIAL----LSSL-QNLSVLDLGGLPVTDLVLRSL----QV-LTKLEYLDLWGSQVSNRGA---- 205 (632)
Q Consensus 140 ~~L~~L~L~~n~i~~~~~~~----~~~l-~~L~~L~L~~n~i~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~~---- 205 (632)
++|++|+|++|.+++..+.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++..+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 88888888888887655543 4444 788888888888877655444 33 3588888888888775443
Q ss_pred HhhcCCC-CCcEEEccCCCCCCCC---------CC-CCCCEEECCCCcccc-----hhccccC-CCCCcEEEeeCCCCCc
Q 006752 206 AVLKMFP-RLSFLNLAWTGVTKLP---------NI-SSLECLNLSNCTIDS-----ILEGNEN-KAPLAKISLAGTTFIN 268 (632)
Q Consensus 206 ~~l~~l~-~L~~L~l~~n~l~~l~---------~l-~~L~~L~L~~~~l~~-----~~~~~~~-~~~L~~L~l~~n~~~~ 268 (632)
..+..++ +|++|++++|.+++.+ .+ ++|++|++++|.+.. ++..+.. .++|++|++++|.+.+
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 3344444 6666666666655422 22 355555555555543 3333332 2344444444444443
Q ss_pred hhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCC---CCchHHHHHHhcC---CCCcEEEccCCcCcchh
Q 006752 269 EREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSM---IGDDSVEMVACVG---ANLRNLNLSNTRFSSAG 342 (632)
Q Consensus 269 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~---l~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~ 342 (632)
.+.... ...+..+++|++|++++|. ++......+.... ++|++|++++|++.+..
T Consensus 240 ~~~~~l-------------------~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 240 PSLENL-------------------KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp CCHHHH-------------------HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred HHHHHH-------------------HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 222100 0123445566666666665 3222222222211 45666666666666543
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=2.5e-22 Score=197.05 Aligned_cols=180 Identities=19% Similarity=0.297 Sum_probs=136.9
Q ss_pred CccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEE
Q 006752 280 LLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357 (632)
Q Consensus 280 ~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 357 (632)
.+++|++++|.++.+ ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|++++..+..+ ..+++|++|+
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ 115 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL-KNLETLWVTDNKLQALPIGVF-DQLVNLAELR 115 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC-TTCCEEECCSSCCCCCCTTTT-TTCSSCCEEE
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC-CCCCEEECCCCcCCcCCHhHc-ccccCCCEEE
Confidence 344444444444444 235556666666666666664444333444 677777777777766554443 5688899999
Q ss_pred ccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccc
Q 006752 358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAET 437 (632)
Q Consensus 358 L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 437 (632)
+++|++++..+..|..+++|++|++++|.+++..+.
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------------------------------------------- 151 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG-------------------------------------------- 151 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------------------------------------------
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh--------------------------------------------
Confidence 999988887777788999999999999999876443
Q ss_pred ccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752 438 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 438 ~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 512 (632)
.+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++..
T Consensus 152 -------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 152 -------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp -------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -------HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 46778899999999999999877789999999999999999999888889999999999999998765
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=4.9e-22 Score=192.68 Aligned_cols=191 Identities=17% Similarity=0.253 Sum_probs=160.2
Q ss_pred CCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEE
Q 006752 301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380 (632)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 380 (632)
...++++++++.++.. |..+ .+.+++|++++|++++..+..+ +.+++|++|++++|.+++..+..+..+++|++|
T Consensus 14 ~~~~~l~~~~~~l~~~-p~~~---~~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSV-PSGI---PADTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCSSC-CSCC---CTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCcccc-CCCC---CCCCCEEEccCCCcCccCHhHh-cCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 3456677777766642 2221 2578888888888887766555 678999999999999998888888999999999
Q ss_pred EccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCcc
Q 006752 381 DISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT 460 (632)
Q Consensus 381 ~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n 460 (632)
++++|++++..+. .|..+++|++|+|++|
T Consensus 89 ~L~~n~l~~~~~~---------------------------------------------------~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 89 GLANNQLASLPLG---------------------------------------------------VFDHLTQLDKLYLGGN 117 (251)
T ss_dssp ECTTSCCCCCCTT---------------------------------------------------TTTTCTTCCEEECCSS
T ss_pred ECCCCcccccChh---------------------------------------------------HhcccCCCCEEEcCCC
Confidence 9999999976544 4677899999999999
Q ss_pred CCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccCh-HH
Q 006752 461 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE-DA 539 (632)
Q Consensus 461 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~-~~ 539 (632)
.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.|. +.
T Consensus 118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 99998777789999999999999999998888899999999999999999999888999999999999999999887 66
Q ss_pred HHHHHHHc
Q 006752 540 ILQFCKMH 547 (632)
Q Consensus 540 ~~~~~~~~ 547 (632)
+.++..+.
T Consensus 198 ~~~l~~~~ 205 (251)
T 3m19_A 198 ILYLSQWI 205 (251)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 66555544
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=5.7e-22 Score=198.67 Aligned_cols=228 Identities=15% Similarity=0.101 Sum_probs=168.9
Q ss_pred CCCCcEEEeeCCCCCch--hhhhhhhcCCCccEEeccCCCCCch--hhh--hcCCCCCeeeccCCCCCchHH----HHHH
Q 006752 253 KAPLAKISLAGTTFINE--REAFLYIETSLLSFLDVSNSSLSRF--CFL--TQMKALEHLDLSSSMIGDDSV----EMVA 322 (632)
Q Consensus 253 ~~~L~~L~l~~n~~~~~--~~~~~~~~~~~L~~L~ls~n~l~~~--~~l--~~~~~L~~L~l~~n~l~~~~~----~~~~ 322 (632)
...++.+.+.++.+... .....+..+++|++|++++|.+.+. ..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34567777777766542 2222233456788888888888765 333 778899999999998886433 2233
Q ss_pred hcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHH--H--HHhcCCCccEEEccCCccccccCCCccch
Q 006752 323 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI--S--YMSMMPSLKFIDISNTDIKGMYPSGQMNV 398 (632)
Q Consensus 323 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--~--~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 398 (632)
.. ++|++|++++|++++..+..+ +.+++|++|++++|++.+... . .+..+++|++|++++|+++...+...
T Consensus 143 ~~-~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--- 217 (310)
T 4glp_A 143 LK-PGLKVLSIAQAHSPAFSCEQV-RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA--- 217 (310)
T ss_dssp BC-SCCCEEEEECCSSCCCCTTSC-CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH---
T ss_pred hc-cCCCEEEeeCCCcchhhHHHh-ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH---
Confidence 33 889999999999887766655 678899999999998876422 1 23578899999999998864311100
Q ss_pred hhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCc---cc
Q 006752 399 FFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF---KE 475 (632)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l---~~ 475 (632)
..+.++++|++|+|++|++++..|..+..+ ++
T Consensus 218 ---------------------------------------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~ 252 (310)
T 4glp_A 218 ---------------------------------------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSA 252 (310)
T ss_dssp ---------------------------------------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTT
T ss_pred ---------------------------------------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCc
Confidence 125778999999999999999878777776 69
Q ss_pred ccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCccc
Q 006752 476 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 535 (632)
Q Consensus 476 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~ 535 (632)
|++|+|++|+++. +|..+. ++|++|++++|++++. |. +..+++|+.|++++|++.
T Consensus 253 L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 253 LNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 9999999999996 566553 7999999999999985 33 677899999999999973
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.5e-21 Score=193.43 Aligned_cols=81 Identities=23% Similarity=0.396 Sum_probs=38.6
Q ss_pred cCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceE
Q 006752 448 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLL 527 (632)
Q Consensus 448 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L 527 (632)
.+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|
T Consensus 149 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 222 (308)
T 1h6u_A 149 GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEE
Confidence 34445555555555544222 4444555555555555544332 4445555555555555544321 4444555555
Q ss_pred ecCCCcc
Q 006752 528 DLHGGWL 534 (632)
Q Consensus 528 ~l~~N~l 534 (632)
++++|++
T Consensus 223 ~l~~N~i 229 (308)
T 1h6u_A 223 TLTNQTI 229 (308)
T ss_dssp EEEEEEE
T ss_pred EccCCee
Confidence 5555544
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=195.25 Aligned_cols=219 Identities=19% Similarity=0.161 Sum_probs=114.1
Q ss_pred CccEEEcCCCCCCCchhHHhh---hCCCCcCEEeccCCCCCChhhHhhh--cCCCCccEEEccCCCCCHhHH----HHhc
Q 006752 91 YLRSLNVADCRRVTSSALWAL---TGMTCLKELDLSRCVKVTDAGMKHL--LSISTLEKLWLSETGLTADGI----ALLS 161 (632)
Q Consensus 91 ~L~~L~L~~~~~i~~~~~~~l---~~l~~L~~L~L~~~~~l~~~~~~~l--~~l~~L~~L~L~~n~i~~~~~----~~~~ 161 (632)
.++.+.+.++. +++.....+ ..+++|++|++++| .+.+..+..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 65 ~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 35555555554 443322221 13344666666655 4444444444 455566666666665554211 2334
Q ss_pred CCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCch--hh--HhhcCCCCCcEEEccCCCCCCCC--------C
Q 006752 162 SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR--GA--AVLKMFPRLSFLNLAWTGVTKLP--------N 229 (632)
Q Consensus 162 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~--~~l~~l~~L~~L~l~~n~l~~l~--------~ 229 (632)
.+++|++|++++|.+.+..+..++.+++|++|++++|++.+. .+ ..+..+++|++|++++|.++.++ .
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 555666666666665555555555556666666666655432 11 11234555555555555554322 3
Q ss_pred CCCCCEEECCCCcccch-hccccCC---CCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCe
Q 006752 230 ISSLECLNLSNCTIDSI-LEGNENK---APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH 305 (632)
Q Consensus 230 l~~L~~L~L~~~~l~~~-~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~ 305 (632)
+++|++|++++|.+.+. |..++.+ ++|++|++++|.++.+|... .++|++|++++|.+++++.+..+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~~~~~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNRAPQPDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCSCCCTTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCCCchhhhCCCccE
Confidence 35555666666665543 4444433 46666666666666554432 2566666666666665544555666666
Q ss_pred eeccCCCCCc
Q 006752 306 LDLSSSMIGD 315 (632)
Q Consensus 306 L~l~~n~l~~ 315 (632)
|++++|.+++
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 6666666654
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.1e-20 Score=188.85 Aligned_cols=192 Identities=21% Similarity=0.378 Sum_probs=110.9
Q ss_pred CCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccC
Q 006752 231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS 310 (632)
Q Consensus 231 ~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~ 310 (632)
++|++|++++|.+..++ .+..+++|++|++++|.+.+++. +..+++|++|++++|.++..+.+..+
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l---------- 106 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVSAIAGL---------- 106 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCGGGTTC----------
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCchhhcCC----------
Confidence 34445555555444443 23444555555555555444433 23444444444444444444334444
Q ss_pred CCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccc
Q 006752 311 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGM 390 (632)
Q Consensus 311 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~ 390 (632)
++|++|++++|++++... +..+++|++|++++|++++..+ +..+++|++|++++|.+++.
T Consensus 107 ---------------~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 107 ---------------QSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp ---------------TTCCEEECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred ---------------CCCCEEECCCCCCCCchh---hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC
Confidence 444444444444444322 2456666666666666665443 66677777777777766653
Q ss_pred cCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccc
Q 006752 391 YPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 470 (632)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 470 (632)
. .+..+++|++|++++|.+++..+ +
T Consensus 167 ~-----------------------------------------------------~l~~l~~L~~L~l~~n~l~~~~~--l 191 (308)
T 1h6u_A 167 T-----------------------------------------------------PLANLSKLTTLKADDNKISDISP--L 191 (308)
T ss_dssp G-----------------------------------------------------GGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred h-----------------------------------------------------hhcCCCCCCEEECCCCccCcChh--h
Confidence 1 13456677777777777776433 6
Q ss_pred cCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752 471 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 513 (632)
Q Consensus 471 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 513 (632)
..+++|++|++++|++++.. .+..+++|+.|++++|++++.
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred cCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 67777777777777777755 367777888888888887764
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=3.1e-21 Score=190.86 Aligned_cols=202 Identities=16% Similarity=0.172 Sum_probs=132.5
Q ss_pred CCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeec
Q 006752 229 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL 308 (632)
Q Consensus 229 ~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l 308 (632)
+++++++++++++.++.+|..+. ++++.|++++|.+.++++. .+..+++|++|++++|.++.++....+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 44556666666666666665543 4566666666666554432 33455556666666665555433344455555555
Q ss_pred cCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccc
Q 006752 309 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 388 (632)
Q Consensus 309 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~ 388 (632)
++|.++ .. +..+ ..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus 85 s~N~l~-------------------------~l-~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 85 SHNQLQ-------------------------SL-PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp CSSCCS-------------------------SC-CCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred CCCcCC-------------------------cC-chhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 555443 21 1111 45677778888888777766667778888888888888887
Q ss_pred cccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccc
Q 006752 389 GMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF 468 (632)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 468 (632)
+..+. .|..+++|+.|+|++|++++..+.
T Consensus 138 ~~~~~---------------------------------------------------~~~~l~~L~~L~L~~N~l~~l~~~ 166 (290)
T 1p9a_G 138 TLPPG---------------------------------------------------LLTPTPKLEKLSLANNNLTELPAG 166 (290)
T ss_dssp CCCTT---------------------------------------------------TTTTCTTCCEEECTTSCCSCCCTT
T ss_pred ccChh---------------------------------------------------hcccccCCCEEECCCCcCCccCHH
Confidence 65443 356677888888888888876666
Q ss_pred cccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752 469 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 469 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 512 (632)
.|..+++|++|+|++|+++. +|..+..+++|+.|++++|++..
T Consensus 167 ~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 167 LLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCC
T ss_pred HhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccC
Confidence 67778888888888888886 55666677788888888887753
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=1.6e-21 Score=187.70 Aligned_cols=195 Identities=14% Similarity=0.192 Sum_probs=133.1
Q ss_pred CccEEeccCCCCCch--hhhhcCCCCCeeeccCCC-CCchHHHHHHhcCCCCcEEEccC-CcCcchhHHHHHhcCCCCcE
Q 006752 280 LLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNLEI 355 (632)
Q Consensus 280 ~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~~ 355 (632)
++++|++++|.++.+ ..+..+++|++|++++|. +++..+..+..+ ++|++|++++ |++++..+..+ ..+++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~l~~~n~l~~i~~~~f-~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL-SKVTHIEIRNTRNLTYIDPDAL-KELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESC-TTCCEEEEEEETTCCEECTTSE-ECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCC-cCCcEEECCCCCCeeEcCHHHh-CCCCCCCE
Confidence 444445555544444 234555666666666664 554444344444 5666666666 66665444433 45777888
Q ss_pred EEccCCCCChHHHHHHhcCCCcc---EEEccCC-ccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhh
Q 006752 356 LSLSGTQIDDYAISYMSMMPSLK---FIDISNT-DIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQ 431 (632)
Q Consensus 356 L~L~~n~l~~~~~~~l~~~~~L~---~L~Ls~n-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (632)
|++++|++++ .|. +..+++|+ +|++++| .+++..+.
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-------------------------------------- 149 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVN-------------------------------------- 149 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTT--------------------------------------
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcc--------------------------------------
Confidence 8888877776 333 66777777 8888888 77765443
Q ss_pred hcccccccccchHHhhcCCccc-ccccCccCCCCCccccccCccccccccccccc-CCCcchhhhccC-CCCcEEeecCc
Q 006752 432 QVGAETDLVLSLTALQNLNHLE-RLNLEQTQVSDATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSSL-SKLTNLSIRDA 508 (632)
Q Consensus 432 ~l~~~~~~l~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~ls~N 508 (632)
.|.++++|+ +|++++|.++...+..+.. ++|+.|++++|+ +++..+..|..+ ++|+.|++++|
T Consensus 150 -------------~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 150 -------------AFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp -------------TTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred -------------cccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 466788899 9999999988654445555 889999999995 888777888888 99999999999
Q ss_pred eeccCCCCCCCCCCCcceEecCCCc
Q 006752 509 VLTNSGLGSFKPPRSLKLLDLHGGW 533 (632)
Q Consensus 509 ~l~~~~~~~l~~~~~L~~L~l~~N~ 533 (632)
++++..+. .+++|+.|++++++
T Consensus 216 ~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 216 SVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCCCCT---TCTTCSEEECTTC-
T ss_pred ccccCChh---HhccCceeeccCcc
Confidence 99876444 45788888888875
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=1.9e-20 Score=181.39 Aligned_cols=180 Identities=20% Similarity=0.257 Sum_probs=143.1
Q ss_pred CccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEcc
Q 006752 280 LLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 359 (632)
Q Consensus 280 ~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 359 (632)
..++++++++.++.++.- -.++++.|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCc-ccCCEEECCCCcCCccCHhHh-ccCCcCCEEECC
Confidence 455666666666655321 12577778888877777666666665 788888888888877666554 568899999999
Q ss_pred CCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccccc
Q 006752 360 GTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDL 439 (632)
Q Consensus 360 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 439 (632)
+|++++..+..|..+++|++|++++|++++..+.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------------------------------- 125 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG---------------------------------------------- 125 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------------------------------------------
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChh----------------------------------------------
Confidence 9998887777788899999999999999876444
Q ss_pred ccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752 440 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 513 (632)
Q Consensus 440 l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 513 (632)
.|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|+++..
T Consensus 126 -----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 126 -----VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -----HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 356778999999999999987777888999999999999999998888899999999999999998764
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=7.2e-20 Score=173.19 Aligned_cols=164 Identities=18% Similarity=0.237 Sum_probs=142.2
Q ss_pred cEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhh
Q 006752 329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIV 408 (632)
Q Consensus 329 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~ 408 (632)
+.++.+++.++.... .-.+++++|++++|++++..+..|..+++|++|+|++|.+++..|.
T Consensus 14 ~~v~c~~~~l~~iP~----~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~--------------- 74 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT----NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD--------------- 74 (220)
T ss_dssp TEEECTTSCCSSCCS----SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT---------------
T ss_pred CEEEcCCCCcCcCCC----ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH---------------
Confidence 456777776665422 1235789999999998887777888999999999999999987666
Q ss_pred hhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCC
Q 006752 409 YNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 488 (632)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 488 (632)
.|.++++|++|+|++|.++...+..|..+++|++|+|++|++++
T Consensus 75 ------------------------------------~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 75 ------------------------------------AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp ------------------------------------TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ------------------------------------HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence 56788999999999999998777778899999999999999999
Q ss_pred cchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHc
Q 006752 489 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH 547 (632)
Q Consensus 489 ~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~ 547 (632)
..|..|..+++|++|++++|++++..+..|..+++|++|++++|++.|+|.+.++.++.
T Consensus 119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l 177 (220)
T 2v9t_B 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYL 177 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHH
Confidence 99999999999999999999999998888999999999999999999999888877654
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=8.3e-20 Score=172.80 Aligned_cols=165 Identities=18% Similarity=0.212 Sum_probs=139.6
Q ss_pred cEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHH-HHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhh
Q 006752 329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMI 407 (632)
Q Consensus 329 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~ 407 (632)
+++++++|.++... . .-.+.+++|++++|++++..+ ..|..+++|++|++++|++++..+.
T Consensus 14 ~~l~~s~n~l~~iP-~---~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~-------------- 75 (220)
T 2v70_A 14 TTVDCSNQKLNKIP-E---HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG-------------- 75 (220)
T ss_dssp TEEECCSSCCSSCC-S---CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT--------------
T ss_pred CEeEeCCCCcccCc-c---CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH--------------
Confidence 46777777766532 1 123467888888888877643 4578899999999999999887554
Q ss_pred hhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCC
Q 006752 408 VYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 487 (632)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 487 (632)
.|.++++|++|+|++|.+++..+..|..+++|++|+|++|+++
T Consensus 76 -------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 76 -------------------------------------AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118 (220)
T ss_dssp -------------------------------------TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred -------------------------------------HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC
Confidence 4678899999999999999988888999999999999999999
Q ss_pred CcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcC
Q 006752 488 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 548 (632)
Q Consensus 488 ~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~ 548 (632)
+..|..|..+++|++|++++|++++..|..|..+++|++|++++|++.|+|.+.++.++..
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence 9989999999999999999999999999999999999999999999999998877776653
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=2.8e-20 Score=178.92 Aligned_cols=194 Identities=12% Similarity=0.147 Sum_probs=142.2
Q ss_pred CCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCC-CCch--hhhhcCCCCCeeeccC-CCCCchHHHHHHhcCCCCcE
Q 006752 255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS-LSRF--CFLTQMKALEHLDLSS-SMIGDDSVEMVACVGANLRN 330 (632)
Q Consensus 255 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~--~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~~ 330 (632)
++++|++++|.+++++.. .+..+++|++|++++|. ++.+ ..+..+++|++|++++ |.+++..+..+..+ ++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l-~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL-PLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC-TTCCE
T ss_pred cccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC-CCCCE
Confidence 566666666666555442 34456666666666665 5555 2566677777777776 77765555555554 77777
Q ss_pred EEccCCcCcchhHHHHHhcCCCCc---EEEccCC-CCChHHHHHHhcCCCcc-EEEccCCccccccCCCccchhhhhhhh
Q 006752 331 LNLSNTRFSSAGVGILAGHLPNLE---ILSLSGT-QIDDYAISYMSMMPSLK-FIDISNTDIKGMYPSGQMNVFFSAYCF 405 (632)
Q Consensus 331 L~l~~n~l~~~~~~~~~~~~~~L~---~L~L~~n-~l~~~~~~~l~~~~~L~-~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 405 (632)
|++++|++++... ++.+++|+ +|++++| .+++..+..|..+++|+ +|++++|+++. +|..
T Consensus 110 L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~----------- 174 (239)
T 2xwt_C 110 LGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGY----------- 174 (239)
T ss_dssp EEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTT-----------
T ss_pred EeCCCCCCccccc---cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHh-----------
Confidence 7777777766322 25677777 9999999 88887777888999999 99999999985 4542
Q ss_pred hhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccC-CCCCccccccCc-cccccccccc
Q 006752 406 MIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ-VSDATLFPLSTF-KELIHLSLRN 483 (632)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l-~~L~~L~Ls~ 483 (632)
.+.. ++|++|++++|. +++..+..|..+ ++|+.|++++
T Consensus 175 ---------------------------------------~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 175 ---------------------------------------AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp ---------------------------------------TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred ---------------------------------------hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 2444 789999999994 998777889999 9999999999
Q ss_pred ccCCCcchhhhccCCCCcEEeecCc
Q 006752 484 ASLTDVSLHQLSSLSKLTNLSIRDA 508 (632)
Q Consensus 484 n~l~~~~~~~~~~l~~L~~L~ls~N 508 (632)
|++++..+. .+++|+.|+++++
T Consensus 215 N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 215 TSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCCCCCCT---TCTTCSEEECTTC
T ss_pred CccccCChh---HhccCceeeccCc
Confidence 999986544 5778999999876
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=8e-20 Score=171.66 Aligned_cols=182 Identities=15% Similarity=0.127 Sum_probs=144.2
Q ss_pred cEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhh
Q 006752 329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIV 408 (632)
Q Consensus 329 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~ 408 (632)
+.++.+++.++.... +..++|++|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus 10 ~~v~c~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------- 70 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT----GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG--------------- 70 (208)
T ss_dssp TEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT---------------
T ss_pred CEEEecCCCccCCCC----CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh---------------
Confidence 456666666554332 2346788889988888877777788899999999999998865433
Q ss_pred hhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCC
Q 006752 409 YNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 488 (632)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 488 (632)
.|.++++|++|++++|.+++..+..|..+++|++|++++|++++
T Consensus 71 ------------------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 114 (208)
T 2o6s_A 71 ------------------------------------VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114 (208)
T ss_dssp ------------------------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ------------------------------------hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc
Confidence 45678899999999999998777778889999999999999999
Q ss_pred cchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCC
Q 006752 489 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSN 568 (632)
Q Consensus 489 ~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 568 (632)
..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+.+. .....+.+.|+++
T Consensus 115 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~----------------~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP----------------GIRYLSEWINKHS 178 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT----------------TTHHHHHHHHHCT
T ss_pred cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC----------------CHHHHHHHHHhCC
Confidence 888788999999999999999998877778889999999999999865331 1233445677888
Q ss_pred CCCCCcchhhhhh
Q 006752 569 GPSPSRTSLRASL 581 (632)
Q Consensus 569 g~ip~~~~~~~~~ 581 (632)
|.+|..++.+...
T Consensus 179 g~ip~~~~~l~~~ 191 (208)
T 2o6s_A 179 GVVRNSAGSVAPD 191 (208)
T ss_dssp TTBBCTTSSBCTT
T ss_pred ceeeccCccccCC
Confidence 9999888877543
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.4e-19 Score=179.12 Aligned_cols=172 Identities=24% Similarity=0.307 Sum_probs=93.4
Q ss_pred cCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEE
Q 006752 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356 (632)
Q Consensus 277 ~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 356 (632)
.+++|+.|++++|.+...+.+..+++|++|++++|.+++..+ +..+ ++|++|++++|++++... .+.+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~~~---l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANL-KNLGWLFLDENKVKDLSS---LKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCGGG---GTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccC-CCCCEEECCCCcCCCChh---hccCCCCCEE
Confidence 345566666666666555555555666666666666555433 3333 555666666655554321 2445555555
Q ss_pred EccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccc
Q 006752 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAE 436 (632)
Q Consensus 357 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 436 (632)
++++|++++. ..+..+++|+.|++++|++++. +
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~-------------------------------------------- 150 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-T-------------------------------------------- 150 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-G--------------------------------------------
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-h--------------------------------------------
Confidence 5555555542 2345555555555555555543 1
Q ss_pred cccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752 437 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 513 (632)
Q Consensus 437 ~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 513 (632)
.+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|+++..
T Consensus 151 --------~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 151 --------VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp --------GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred --------hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 24455556666666666655433 55556666666666666553 2 255556666666666655553
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=3e-20 Score=190.11 Aligned_cols=186 Identities=19% Similarity=0.221 Sum_probs=153.4
Q ss_pred CeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEcc
Q 006752 304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 383 (632)
Q Consensus 304 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 383 (632)
+.++++++.++. +|.. ..+.++.|++++|++++..+..+...+++|++|++++|++++..+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~-iP~~---~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQS---LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSS---CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCcc---CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 567777777764 2322 225688888888888877665542278999999999999998888889999999999999
Q ss_pred CCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCC
Q 006752 384 NTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 463 (632)
Q Consensus 384 ~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~ 463 (632)
+|++++..+. .|.++++|++|+|++|+++
T Consensus 97 ~N~l~~~~~~---------------------------------------------------~~~~l~~L~~L~L~~N~i~ 125 (361)
T 2xot_A 97 SNHLHTLDEF---------------------------------------------------LFSDLQALEVLLLYNNHIV 125 (361)
T ss_dssp SSCCCEECTT---------------------------------------------------TTTTCTTCCEEECCSSCCC
T ss_pred CCcCCcCCHH---------------------------------------------------HhCCCcCCCEEECCCCccc
Confidence 9999886444 4678899999999999999
Q ss_pred CCccccccCcccccccccccccCCCcchhhh---ccCCCCcEEeecCceeccCCCCCCCCCCC--cceEecCCCcccChH
Q 006752 464 DATLFPLSTFKELIHLSLRNASLTDVSLHQL---SSLSKLTNLSIRDAVLTNSGLGSFKPPRS--LKLLDLHGGWLLTED 538 (632)
Q Consensus 464 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~ls~N~l~~~~~~~l~~~~~--L~~L~l~~N~l~~~~ 538 (632)
+..+..|..+++|+.|+|++|+|++..+..| ..+++|+.|+|++|+|++..+..+..++. ++.|++++|++.|+|
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 9888999999999999999999999777666 67999999999999999877677777766 489999999999999
Q ss_pred HHHHHH
Q 006752 539 AILQFC 544 (632)
Q Consensus 539 ~~~~~~ 544 (632)
.+.++.
T Consensus 206 ~l~~~~ 211 (361)
T 2xot_A 206 KLYQLF 211 (361)
T ss_dssp HHHHHH
T ss_pred CcHHHH
Confidence 887653
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=8.9e-19 Score=173.33 Aligned_cols=191 Identities=20% Similarity=0.298 Sum_probs=159.3
Q ss_pred CCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEc
Q 006752 279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 358 (632)
Q Consensus 279 ~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L 358 (632)
..+..+.+..+.+.....+..+++|++|++++|.+.+.. .+..+ ++|++|++++|++++..+ ...+++|++|++
T Consensus 24 ~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~l-~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l 97 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP---LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG---GTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccCh--hHhcC-CCCCEEEccCCccCCCcc---cccCCCCCEEEC
Confidence 345555677777777766778899999999999988652 35555 899999999999988765 378999999999
Q ss_pred cCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccc
Q 006752 359 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETD 438 (632)
Q Consensus 359 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 438 (632)
++|.+++.. .+..+++|++|++++|++++. +
T Consensus 98 ~~n~l~~~~--~l~~l~~L~~L~L~~n~i~~~-~---------------------------------------------- 128 (291)
T 1h6t_A 98 DENKVKDLS--SLKDLKKLKSLSLEHNGISDI-N---------------------------------------------- 128 (291)
T ss_dssp CSSCCCCGG--GGTTCTTCCEEECTTSCCCCC-G----------------------------------------------
T ss_pred CCCcCCCCh--hhccCCCCCEEECCCCcCCCC-h----------------------------------------------
Confidence 999998743 388999999999999998874 2
Q ss_pred cccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCC
Q 006752 439 LVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 518 (632)
Q Consensus 439 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l 518 (632)
.+..+++|++|++++|.+++. ..+..+++|+.|++++|++++..+ +..+++|+.|++++|++++. + .+
T Consensus 129 ------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l 196 (291)
T 1h6t_A 129 ------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-AL 196 (291)
T ss_dssp ------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GG
T ss_pred ------hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hh
Confidence 366788999999999999985 678889999999999999999765 88999999999999999985 3 48
Q ss_pred CCCCCcceEecCCCcccC
Q 006752 519 KPPRSLKLLDLHGGWLLT 536 (632)
Q Consensus 519 ~~~~~L~~L~l~~N~l~~ 536 (632)
..+++|+.|++++|++..
T Consensus 197 ~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 197 AGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCTTCSEEEEEEEEEEC
T ss_pred ccCCCCCEEECcCCcccC
Confidence 889999999999998743
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=2.7e-18 Score=163.55 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=134.4
Q ss_pred CCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhh
Q 006752 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFM 406 (632)
Q Consensus 327 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~ 406 (632)
+-+.++.++++++.... +..++|++|++++|.+++..+..|..+++|++|+|++|++.+..+.
T Consensus 20 s~~~v~c~~~~l~~ip~----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~------------- 82 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPA----GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG------------- 82 (229)
T ss_dssp ETTEEECTTSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------------
T ss_pred eCCEeEccCCCcCccCC----CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh-------------
Confidence 34567777776664432 2347899999999999988888889999999999999999765433
Q ss_pred hhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccC
Q 006752 407 IVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 486 (632)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 486 (632)
.|.++++|++|+|++|++++..+..|..+++|++|+|++|++
T Consensus 83 --------------------------------------~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 83 --------------------------------------VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp --------------------------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------------hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 467789999999999999998778889999999999999999
Q ss_pred CCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHH
Q 006752 487 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA 539 (632)
Q Consensus 487 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~ 539 (632)
+. +|..+..+++|++|++++|++++..+..|..+++|+.|++++|++.|.|.
T Consensus 125 ~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 125 TE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 96 67888999999999999999999888889999999999999999988774
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.3e-18 Score=188.54 Aligned_cols=197 Identities=22% Similarity=0.270 Sum_probs=142.4
Q ss_pred cEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCC
Q 006752 257 AKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT 336 (632)
Q Consensus 257 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 336 (632)
..+.+..+.+.++.. ...++.|+.|++++|.+..++.+..+++|+.|+|++|.+.+..+ +..+ ++|+.|++++|
T Consensus 24 ~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N 97 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNL-KNLGWLFLDEN 97 (605)
T ss_dssp HHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGC-TTCCEEECCSS
T ss_pred HHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccC-CCCCEEECcCC
Confidence 334444555544332 23567788888888888877778888888888888888877655 4454 78888888888
Q ss_pred cCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccc
Q 006752 337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAY 416 (632)
Q Consensus 337 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (632)
.+.+.. .+ ..+++|++|++++|++.+. ..+..+++|+.|+|++|.+++. +
T Consensus 98 ~l~~l~--~l-~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~------------------------ 147 (605)
T 1m9s_A 98 KIKDLS--SL-KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-T------------------------ 147 (605)
T ss_dssp CCCCCT--TS-TTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G------------------------
T ss_pred CCCCCh--hh-ccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-h------------------------
Confidence 877643 22 5678888888888887763 3477788888888888877764 1
Q ss_pred cccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhcc
Q 006752 417 GYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 496 (632)
Q Consensus 417 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 496 (632)
.+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.|++. ..+..
T Consensus 148 ----------------------------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~ 195 (605)
T 1m9s_A 148 ----------------------------VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAG 195 (605)
T ss_dssp ----------------------------GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTT
T ss_pred ----------------------------hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHcc
Confidence 36677888888888888888655 77888888888888888874 35778
Q ss_pred CCCCcEEeecCceeccCCCCCCCCC
Q 006752 497 LSKLTNLSIRDAVLTNSGLGSFKPP 521 (632)
Q Consensus 497 l~~L~~L~ls~N~l~~~~~~~l~~~ 521 (632)
+++|+.|+|++|++++.....+..+
T Consensus 196 l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 196 LKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp CTTCSEEECCSEEEECCCCCCCSSC
T ss_pred CCCCCEEEccCCcCcCCcccccccE
Confidence 8888888888888887644444433
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=7.5e-19 Score=164.98 Aligned_cols=161 Identities=17% Similarity=0.185 Sum_probs=90.7
Q ss_pred CCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEE
Q 006752 301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380 (632)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 380 (632)
+++++|++++|.+++..+..+..+ ++|++|++++|++++..+..+ +.+++|++|++++|++++..+..+..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDEL-TSLTQLYLGGNKLQSLPNGVF-NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhccc-ccCcEEECCCCccCccChhhc-CCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 345555555555544333333333 555555555555554333322 445666666666666665555555566666666
Q ss_pred EccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCcc
Q 006752 381 DISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT 460 (632)
Q Consensus 381 ~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n 460 (632)
++++|++++..+. .+.++++|++|++++|
T Consensus 106 ~L~~N~l~~~~~~---------------------------------------------------~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 106 ALNTNQLQSLPDG---------------------------------------------------VFDKLTQLKDLRLYQN 134 (208)
T ss_dssp ECCSSCCCCCCTT---------------------------------------------------TTTTCTTCCEEECCSS
T ss_pred EcCCCcCcccCHh---------------------------------------------------HhccCCcCCEEECCCC
Confidence 6666666654332 2445566666666666
Q ss_pred CCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCC
Q 006752 461 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 521 (632)
Q Consensus 461 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~ 521 (632)
.+++..+..+..+++|++|++++|.+.+ .+++|++|+++.|++++.+|..++.+
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 135 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 6666555556666666666666665543 34556666666666666666665544
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=6e-19 Score=179.72 Aligned_cols=239 Identities=15% Similarity=0.088 Sum_probs=136.9
Q ss_pred EEEccCCCCCCCCC--CCCCCEEECCCCcccchhcc-ccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCC
Q 006752 216 FLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292 (632)
Q Consensus 216 ~L~l~~n~l~~l~~--l~~L~~L~L~~~~l~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 292 (632)
+++.++++++.+|. .+++++|++++|+++.+|.. +.++++|++|++++|++.+..+.
T Consensus 13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~-------------------- 72 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA-------------------- 72 (350)
T ss_dssp EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT--------------------
T ss_pred EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh--------------------
Confidence 44445555555442 13455555555555555443 23445555555555544332222
Q ss_pred chhhhhcCCCCCe-eeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccC-CCCChHHHHH
Q 006752 293 RFCFLTQMKALEH-LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISY 370 (632)
Q Consensus 293 ~~~~l~~~~~L~~-L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~ 370 (632)
.+|.+++++++ +.+.+|+++...+..+..+ ++|++|++++|++.......+ ....++..+++.+ +++....+..
T Consensus 73 --~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l-~~L~~L~l~~n~l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~~ 148 (350)
T 4ay9_X 73 --DVFSNLPKLHEIRIEKANNLLYINPEAFQNL-PNLQYLLISNTGIKHLPDVHK-IHSLQKVLLDIQDNINIHTIERNS 148 (350)
T ss_dssp --TSBCSCTTCCEEEEEEETTCCEECTTSBCCC-TTCCEEEEEEECCSSCCCCTT-CCBSSCEEEEEESCTTCCEECTTS
T ss_pred --hHhhcchhhhhhhcccCCcccccCchhhhhc-cccccccccccccccCCchhh-cccchhhhhhhccccccccccccc
Confidence 23444444443 3333455554444444444 556666666665554333222 2334566676654 4555544445
Q ss_pred HhcC-CCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcC
Q 006752 371 MSMM-PSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNL 449 (632)
Q Consensus 371 l~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l 449 (632)
|..+ ..++.|++++|+++...+.. + ..
T Consensus 149 f~~~~~~l~~L~L~~N~i~~i~~~~---------------------------------------------------f-~~ 176 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQEIHNSA---------------------------------------------------F-NG 176 (350)
T ss_dssp STTSBSSCEEEECCSSCCCEECTTS---------------------------------------------------S-TT
T ss_pred hhhcchhhhhhccccccccCCChhh---------------------------------------------------c-cc
Confidence 5554 35888899999888753332 2 23
Q ss_pred CcccccccCc-cCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEe
Q 006752 450 NHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLD 528 (632)
Q Consensus 450 ~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~ 528 (632)
.+|++|++++ |.++...+..|..+++|++|+|++|+|+.+.+..|.+ |+.|.+.++.--...| .+..+++|+.++
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~lP-~l~~l~~L~~l~ 252 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKKLP-TLEKLVALMEAS 252 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCCCC-CTTTCCSCCEEE
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCcCC-CchhCcChhhCc
Confidence 5788999975 6777765667889999999999999999876655555 4444444433223334 477889999999
Q ss_pred cCCCcc
Q 006752 529 LHGGWL 534 (632)
Q Consensus 529 l~~N~l 534 (632)
++++..
T Consensus 253 l~~~~~ 258 (350)
T 4ay9_X 253 LTYPSH 258 (350)
T ss_dssp CSCHHH
T ss_pred CCCCcc
Confidence 987653
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=8.6e-18 Score=182.17 Aligned_cols=188 Identities=21% Similarity=0.294 Sum_probs=113.8
Q ss_pred CccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEcc
Q 006752 280 LLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 359 (632)
Q Consensus 280 ~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 359 (632)
.+..+.+..+.+.....+..+++|+.|++++|.+.+.. .+..+ ++|+.|+|++|++++..+ +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT--TGGGC-TTCCEEECTTSCCCCCGG---GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh--HHccC-CCCCEEEeeCCCCCCChh---hccCCCCCEEECc
Confidence 34445555555555555556666666666666665432 23333 666666666666665544 2556666666666
Q ss_pred CCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccccc
Q 006752 360 GTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDL 439 (632)
Q Consensus 360 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 439 (632)
+|.+++.. .+..+++|+.|+|++|.+.+. +
T Consensus 96 ~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l-~----------------------------------------------- 125 (605)
T 1m9s_A 96 ENKIKDLS--SLKDLKKLKSLSLEHNGISDI-N----------------------------------------------- 125 (605)
T ss_dssp SSCCCCCT--TSTTCTTCCEEECTTSCCCCC-G-----------------------------------------------
T ss_pred CCCCCCCh--hhccCCCCCEEEecCCCCCCC-c-----------------------------------------------
Confidence 66665422 456666666666666666542 1
Q ss_pred ccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCC
Q 006752 440 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK 519 (632)
Q Consensus 440 l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~ 519 (632)
.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|++++. ..+.
T Consensus 126 -----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~ 194 (605)
T 1m9s_A 126 -----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALA 194 (605)
T ss_dssp -----GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGT
T ss_pred -----cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHc
Confidence 245556666666666666663 455666666666666666666554 66666666666666666663 3456
Q ss_pred CCCCcceEecCCCcc
Q 006752 520 PPRSLKLLDLHGGWL 534 (632)
Q Consensus 520 ~~~~L~~L~l~~N~l 534 (632)
.+++|+.|++++|++
T Consensus 195 ~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 195 GLKNLDVLELFSQEC 209 (605)
T ss_dssp TCTTCSEEECCSEEE
T ss_pred cCCCCCEEEccCCcC
Confidence 666666666666665
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=1.6e-18 Score=176.50 Aligned_cols=235 Identities=16% Similarity=0.123 Sum_probs=145.0
Q ss_pred cEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCC-----CCCCCCCEEECCCCccc-chhccc-cCCCCCcE-EEee
Q 006752 191 EYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL-----PNISSLECLNLSNCTID-SILEGN-ENKAPLAK-ISLA 262 (632)
Q Consensus 191 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l-----~~l~~L~~L~L~~~~l~-~~~~~~-~~~~~L~~-L~l~ 262 (632)
++++.++++++. +|..+ .+++++|++++|.++.+ .++++|++|++++|.+. .++... .+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 567888888875 45444 36899999999999864 46899999999999985 466554 47777765 5566
Q ss_pred CCCCCchhhhhhhhcCCCccEEeccCCCCCchhh--hhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcc
Q 006752 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCF--LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340 (632)
Q Consensus 263 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~--l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 340 (632)
+|++..+++. .+..+++|++|++++|.+...+. +....++..+++.++ +++..
T Consensus 89 ~N~l~~l~~~-~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~------------------------~~i~~ 143 (350)
T 4ay9_X 89 ANNLLYINPE-AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN------------------------INIHT 143 (350)
T ss_dssp ETTCCEECTT-SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC------------------------TTCCE
T ss_pred CCcccccCch-hhhhccccccccccccccccCCchhhcccchhhhhhhccc------------------------ccccc
Confidence 7888776553 34566667777777666655522 222233334444331 23333
Q ss_pred hhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccc
Q 006752 341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVI 420 (632)
Q Consensus 341 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (632)
.....+.+....++.|++++|+++...+..+ ...+|+.+++++++..+.+|..
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~-------------------------- 196 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPND-------------------------- 196 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTT--------------------------
T ss_pred ccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHH--------------------------
Confidence 2222222222356677777777765433333 3456777777654433344542
Q ss_pred cccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCC
Q 006752 421 FPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 500 (632)
Q Consensus 421 ~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 500 (632)
.|.++++|++||+++|+++...+..+.++++|+.+++. .+.. .| .+..+++|
T Consensus 197 ------------------------~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~--~l~~-lP-~l~~l~~L 248 (350)
T 4ay9_X 197 ------------------------VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--NLKK-LP-TLEKLVAL 248 (350)
T ss_dssp ------------------------TTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCT--TCCC-CC-CTTTCCSC
T ss_pred ------------------------HhccCcccchhhcCCCCcCccChhhhccchHhhhccCC--CcCc-CC-CchhCcCh
Confidence 45667778888888888777555555555555555543 3333 33 36677788
Q ss_pred cEEeecCc
Q 006752 501 TNLSIRDA 508 (632)
Q Consensus 501 ~~L~ls~N 508 (632)
+.++++++
T Consensus 249 ~~l~l~~~ 256 (350)
T 4ay9_X 249 MEASLTYP 256 (350)
T ss_dssp CEEECSCH
T ss_pred hhCcCCCC
Confidence 88887764
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=3.4e-18 Score=161.69 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=129.9
Q ss_pred CeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEcc
Q 006752 304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 383 (632)
Q Consensus 304 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 383 (632)
+.+++++|.++.. |..+ ...+++|++++|++++..+...++.+++|++|++++|++++..+..|..+++|++|+++
T Consensus 14 ~~l~~s~n~l~~i-P~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSC-CSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccC-ccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 4777777777642 3222 25678888888888876543333678999999999999998888789999999999999
Q ss_pred CCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCC
Q 006752 384 NTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 463 (632)
Q Consensus 384 ~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~ 463 (632)
+|.+++..+. .|.++++|++|+|++|.++
T Consensus 90 ~N~l~~~~~~---------------------------------------------------~~~~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 90 SNRLENVQHK---------------------------------------------------MFKGLESLKTLMLRSNRIT 118 (220)
T ss_dssp SSCCCCCCGG---------------------------------------------------GGTTCSSCCEEECTTSCCC
T ss_pred CCccCccCHh---------------------------------------------------HhcCCcCCCEEECCCCcCC
Confidence 9999887554 5778899999999999999
Q ss_pred CCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752 464 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 513 (632)
Q Consensus 464 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 513 (632)
+..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++...
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 98899999999999999999999998899999999999999999998863
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=7.7e-18 Score=180.46 Aligned_cols=194 Identities=19% Similarity=0.235 Sum_probs=119.2
Q ss_pred CCcEEEccCCCCCCCCC--CCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCC
Q 006752 213 RLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 290 (632)
Q Consensus 213 ~L~~L~l~~n~l~~l~~--l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~ 290 (632)
+++.|++++|.+++++. .++|++|++++|.++.+| .. +++|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~-------------------------l~~L~~L~Ls~N~ 111 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP---EL-------------------------PASLEYLDACDNR 111 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC---CC-------------------------CTTCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc---cc-------------------------cCCCCEEEccCCC
Confidence 56666666666555442 244555555555554444 22 3445555555555
Q ss_pred CCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHH
Q 006752 291 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 370 (632)
Q Consensus 291 l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 370 (632)
+++++.+.. +|++|++++|.+++. |. . +++|+.|++++|++++... .+++|++|++++|++++ +|.
T Consensus 112 l~~ip~l~~--~L~~L~Ls~N~l~~l-p~---~-l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~-lp~- 177 (571)
T 3cvr_A 112 LSTLPELPA--SLKHLDVDNNQLTML-PE---L-PALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTF-LPE- 177 (571)
T ss_dssp CSCCCCCCT--TCCEEECCSSCCSCC-CC---C-CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSC-CCC-
T ss_pred CCCcchhhc--CCCEEECCCCcCCCC-CC---c-CccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCC-cch-
Confidence 544433222 666666666666552 22 2 2677777777777765322 36778888888888776 333
Q ss_pred HhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCC
Q 006752 371 MSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLN 450 (632)
Q Consensus 371 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~ 450 (632)
+. ++|+.|++++|+++. +|. +.. .-+...+
T Consensus 178 l~--~~L~~L~Ls~N~L~~-lp~-~~~----------------------------------------------~L~~~~~ 207 (571)
T 3cvr_A 178 LP--ESLEALDVSTNLLES-LPA-VPV----------------------------------------------RNHHSEE 207 (571)
T ss_dssp CC--TTCCEEECCSSCCSS-CCC-CC------------------------------------------------------
T ss_pred hh--CCCCEEECcCCCCCc-hhh-HHH----------------------------------------------hhhcccc
Confidence 44 788888888888874 344 311 0012234
Q ss_pred cccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCC
Q 006752 451 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK 499 (632)
Q Consensus 451 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 499 (632)
.|+.|+|++|.|+. +|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus 208 ~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 208 TEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 45899999999887 6777777899999999999999888888776544
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=2.1e-18 Score=167.87 Aligned_cols=170 Identities=18% Similarity=0.264 Sum_probs=85.1
Q ss_pred CCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEE
Q 006752 278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357 (632)
Q Consensus 278 ~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 357 (632)
+.++..++++++.++.+..+..+++|++|++++|.+++.. .+..+ ++|++|++++|++++..+ ++.+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFF-TNLKELHLSHNQISDLSP---LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG---GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhC-CCCCEEECCCCccCCChh---hccCCCCCEEE
Confidence 3445555555555555555555555666666655555322 23333 455555555555554433 24455555555
Q ss_pred ccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccc
Q 006752 358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAET 437 (632)
Q Consensus 358 L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 437 (632)
+++|++++..+ +.. ++|++|++++|++++.
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~----------------------------------------------- 121 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT----------------------------------------------- 121 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS-----------------------------------------------
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccCCC-----------------------------------------------
Confidence 55555543211 112 4555555555555442
Q ss_pred ccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752 438 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 513 (632)
Q Consensus 438 ~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 513 (632)
+.+..+++|++|++++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|+++..
T Consensus 122 ------~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 122 ------DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ------GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ------hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 1234455555555555555553 2 345555555555555555554 3455555555555555555544
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=1.7e-17 Score=156.89 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=128.2
Q ss_pred CeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEcc
Q 006752 304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 383 (632)
Q Consensus 304 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 383 (632)
+.++++++.++.. |.. ..+.+++|++++|++++..+..+ ..+++|++|++++|++++..+..|..+++|++|+|+
T Consensus 14 ~~v~c~~~~l~~i-P~~---l~~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTN---LPETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSC-CSS---CCTTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcC-CCc---cCcCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 4566666666543 221 12678888888888887666555 668999999999999998888889999999999999
Q ss_pred CCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCC
Q 006752 384 NTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 463 (632)
Q Consensus 384 ~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~ 463 (632)
+|++++..+. .|.++++|++|+|++|.++
T Consensus 89 ~N~l~~l~~~---------------------------------------------------~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 89 GNKITELPKS---------------------------------------------------LFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp SSCCCCCCTT---------------------------------------------------TTTTCTTCCEEECCSSCCC
T ss_pred CCcCCccCHh---------------------------------------------------HccCCCCCCEEECCCCCCC
Confidence 9999975333 4677899999999999999
Q ss_pred CCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752 464 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 464 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 512 (632)
+..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++..
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9889999999999999999999999888889999999999999999874
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.5e-17 Score=167.97 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=58.7
Q ss_pred HhhcCCcccccccCccCCCCCccccccCccccc-ccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCC
Q 006752 445 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELI-HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS 523 (632)
Q Consensus 445 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~ 523 (632)
+|.+|++|+.|+|.+| ++.+...+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|+++.+.+.+|.++++
T Consensus 245 aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP 322 (329)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCC
T ss_pred hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcc
Confidence 4666777777777776 6666666677777777 777776 666666677777777777777777777777777777777
Q ss_pred cceEe
Q 006752 524 LKLLD 528 (632)
Q Consensus 524 L~~L~ 528 (632)
|+.++
T Consensus 323 L~~ly 327 (329)
T 3sb4_A 323 SKLIY 327 (329)
T ss_dssp CCEEE
T ss_pred hhhhc
Confidence 77765
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=8.8e-17 Score=172.27 Aligned_cols=165 Identities=15% Similarity=0.146 Sum_probs=102.5
Q ss_pred CCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEc
Q 006752 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219 (632)
Q Consensus 140 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 219 (632)
++|++|+|++|.++. +| ..+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 445555555555553 22 334566666666666555 333 333 66666666666655 222 4566666666
Q ss_pred cCCCCCCCCC-CCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCc-------cEEeccCCCC
Q 006752 220 AWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLL-------SFLDVSNSSL 291 (632)
Q Consensus 220 ~~n~l~~l~~-l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L-------~~L~ls~n~l 291 (632)
++|.++.++. +++|++|++++|.++.+|. +. ++|+.|++++|.++.+|. +. . +| +.|++++|.+
T Consensus 148 s~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~--~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 148 DNNQLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VP--V--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCC
T ss_pred CCCccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HH--H--hhhcccccceEEecCCCcc
Confidence 6666666553 4567777777777777666 33 777777777777776655 21 1 45 7777777777
Q ss_pred Cch-hhhhcCCCCCeeeccCCCCCchHHHHHHhc
Q 006752 292 SRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACV 324 (632)
Q Consensus 292 ~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 324 (632)
+.+ ..+..+++|+.|++++|.+++..|..+..+
T Consensus 220 ~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 220 THIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred eecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 776 345667788888888888877777776654
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=8.7e-18 Score=171.84 Aligned_cols=127 Identities=25% Similarity=0.284 Sum_probs=59.9
Q ss_pred cEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhh-cCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEc
Q 006752 257 AKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLT-QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333 (632)
Q Consensus 257 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l 333 (632)
+.++++++.+..+|..+ ...++.|++++|.++.+ ..+. .+++|++|++++|++++..+..+..+ ++|++|++
T Consensus 21 ~~l~c~~~~l~~iP~~~----~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL----PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV-PNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSCCSSC----CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEEC
T ss_pred CEEEeCCCCcCccCccC----CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC-CCCCEEEC
Confidence 45666666666555432 23455555555555554 2233 45555555555555554443333333 44444444
Q ss_pred cCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCcccc
Q 006752 334 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG 389 (632)
Q Consensus 334 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~ 389 (632)
++|+++...+..+ ..+++|++|++++|++++..+..|..+++|+.|+|++|++++
T Consensus 96 s~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 96 SSNHLHTLDEFLF-SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp CSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCCcCCcCCHHHh-CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 4444444333222 334444444444444444434444444444444444444443
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.3e-17 Score=162.20 Aligned_cols=170 Identities=24% Similarity=0.345 Sum_probs=145.7
Q ss_pred cCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCcc
Q 006752 299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 378 (632)
Q Consensus 299 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 378 (632)
.+.++..++++++.+++.. .+..+ ++|++|++++|.++... .+ +.+++|++|++++|++++..+ +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQSLA--GM-QFFTNLKELHLSHNQISDLSP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCCCT--TG-GGCTTCCEEECCSSCCCCCGG--GTTCSSCC
T ss_pred HHHHHHHHHhcCCCccccc--chhhc-CcCcEEECcCCCcccch--HH-hhCCCCCEEECCCCccCCChh--hccCCCCC
Confidence 4556778889999988755 35555 89999999999998754 33 679999999999999998766 89999999
Q ss_pred EEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccC
Q 006752 379 FIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLE 458 (632)
Q Consensus 379 ~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls 458 (632)
+|++++|++++. |. +.. ++|++|+++
T Consensus 89 ~L~L~~N~l~~l-~~----------------------------------------------------~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 89 ELSVNRNRLKNL-NG----------------------------------------------------IPS-ACLSRLFLD 114 (263)
T ss_dssp EEECCSSCCSCC-TT----------------------------------------------------CCC-SSCCEEECC
T ss_pred EEECCCCccCCc-Cc----------------------------------------------------ccc-CcccEEEcc
Confidence 999999999885 33 122 789999999
Q ss_pred ccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccC
Q 006752 459 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 536 (632)
Q Consensus 459 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~ 536 (632)
+|++++. ..+..+++|+.|++++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|++.+
T Consensus 115 ~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 115 NNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp SSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 9999984 4588999999999999999996 3 789999999999999999997 778899999999999999844
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=3.7e-17 Score=151.80 Aligned_cols=153 Identities=22% Similarity=0.365 Sum_probs=88.7
Q ss_pred cCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCcc
Q 006752 299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 378 (632)
Q Consensus 299 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 378 (632)
.+++|++|++++|.+++.. .+..+ ++|++|++++|.++... .+ ..+++|++|++++|++++..+..++.+++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~l~~n~~~~~~--~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYA-HNIKDLTINNIHATNYN--PI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGC-TTCSEEEEESCCCSCCG--GG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hcCCccEEeccCCCccChH--HHhcC-CCCCEEEccCCCCCcch--hh-hcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 3445555555555554322 23333 55555555555444332 12 4466666666666666665556666666777
Q ss_pred EEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccC
Q 006752 379 FIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLE 458 (632)
Q Consensus 379 ~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls 458 (632)
+|++++|.+++..|. .+..+++|++|+++
T Consensus 116 ~L~Ls~n~i~~~~~~---------------------------------------------------~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 116 LLDISHSAHDDSILT---------------------------------------------------KINTLPKVNSIDLS 144 (197)
T ss_dssp EEECCSSBCBGGGHH---------------------------------------------------HHTTCSSCCEEECC
T ss_pred EEEecCCccCcHhHH---------------------------------------------------HHhhCCCCCEEEcc
Confidence 777777766654333 45566677777777
Q ss_pred ccC-CCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752 459 QTQ-VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 459 ~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 512 (632)
+|. +++ ++ .+..+++|++|++++|++++.. .+..+++|++|++++|++.+
T Consensus 145 ~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 145 YNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred CCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 776 544 33 4666777777777777777633 56677777777777777654
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=2.6e-17 Score=166.14 Aligned_cols=280 Identities=16% Similarity=0.172 Sum_probs=204.6
Q ss_pred CCCCCEEEcCCCCCChHHHHhccC-CCCccEEEecCCCCC--chhhHhhcCCCCCcEEEccCCCCCC--CCC--------
Q 006752 163 LQNLSVLDLGGLPVTDLVLRSLQV-LTKLEYLDLWGSQVS--NRGAAVLKMFPRLSFLNLAWTGVTK--LPN-------- 229 (632)
Q Consensus 163 l~~L~~L~L~~n~i~~~~~~~l~~-l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~--l~~-------- 229 (632)
+.+++.|.++++ +.......+.. +++|+.|+|++|++. ..... .++.++.+.+..+.+.. +.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVPAYAFSNVVNGVTKG 99 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEECTTTTEEEETTEEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccCHHHhcccccccccc
Confidence 456888888874 33333445554 889999999999887 22221 22224555555554443 456
Q ss_pred CCCCCEEECCCCcccchhcccc-CCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCC----Cch--hhhhcCCC
Q 006752 230 ISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL----SRF--CFLTQMKA 302 (632)
Q Consensus 230 l~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l----~~~--~~l~~~~~ 302 (632)
+++|+++++.+ .++.+++..+ +|++|+++++.+|.+..++.. .|..+.++..+....... ..+ .++..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~-aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPE-ALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTT-SSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchh-hhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 89999999998 8888887655 889999999999988877654 566777777777655321 111 34556667
Q ss_pred CC-eeeccCCCCCchHHHHHHhc---CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCcc
Q 006752 303 LE-HLDLSSSMIGDDSVEMVACV---GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 378 (632)
Q Consensus 303 L~-~L~l~~n~l~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 378 (632)
|+ .+.+.... ..+..+... ..+++.+.+.++ +.......+...|++|+++++++|+++.....+|.+|++|+
T Consensus 178 L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 178 LETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cceeEEecCCC---cHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 76 55555432 233333322 256788888765 44444445545699999999999999988888999999999
Q ss_pred EEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCccc-cccc
Q 006752 379 FIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLE-RLNL 457 (632)
Q Consensus 379 ~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~-~L~L 457 (632)
.+++++| +... +. .+|.+|.+|+ .+++
T Consensus 254 ~l~l~~n-i~~I-~~--------------------------------------------------~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 254 KIKLPHN-LKTI-GQ--------------------------------------------------RVFSNCGRLAGTLEL 281 (329)
T ss_dssp EEECCTT-CCEE-CT--------------------------------------------------TTTTTCTTCCEEEEE
T ss_pred EEECCcc-ccee-hH--------------------------------------------------HHhhCChhccEEEEE
Confidence 9999998 6553 44 2688999999 9999
Q ss_pred CccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEee
Q 006752 458 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 505 (632)
Q Consensus 458 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 505 (632)
.+ .++.+.+.+|.+|++|+.+++++|+++.+.+.+|.++++|+.++.
T Consensus 282 ~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 282 PA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99 888888899999999999999999999999999999999999874
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=3.3e-17 Score=151.31 Aligned_cols=142 Identities=16% Similarity=0.225 Sum_probs=122.8
Q ss_pred cEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhc
Q 006752 354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQV 433 (632)
Q Consensus 354 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 433 (632)
+++++++|.++. +|..+ ..++++|++++|.+++..+..
T Consensus 11 ~~l~~s~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~--------------------------------------- 48 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDI--PLHTTELLLNDNELGRISSDG--------------------------------------- 48 (192)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSCCCCSBCCSC---------------------------------------
T ss_pred CEEEcCCCCcCc-CccCC--CCCCCEEECCCCcCCccCCcc---------------------------------------
Confidence 678888888764 33323 238999999999998875542
Q ss_pred ccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752 434 GAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 513 (632)
Q Consensus 434 ~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 513 (632)
.+..+++|++|+|++|.+++..|..|..+++|++|+|++|+|++..+..|..+++|++|++++|++++.
T Consensus 49 -----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 49 -----------LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp -----------SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred -----------ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 367889999999999999998899999999999999999999999888899999999999999999999
Q ss_pred CCCCCCCCCCcceEecCCCcccChHHHHHHHHHcC
Q 006752 514 GLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 548 (632)
Q Consensus 514 ~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~ 548 (632)
.|..|..+++|++|++++|++.+++...++..+..
T Consensus 118 ~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~ 152 (192)
T 1w8a_A 118 MPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLR 152 (192)
T ss_dssp CTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred CHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHH
Confidence 99999999999999999999999888777766543
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=6.2e-16 Score=143.52 Aligned_cols=151 Identities=19% Similarity=0.258 Sum_probs=90.7
Q ss_pred cCcccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCcc
Q 006752 64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143 (632)
Q Consensus 64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 143 (632)
++++++|++++|. +.. ++ .+..+++|++|++++|. ++.. ..+..+++|++|++++| .+++..+..+.++++|+
T Consensus 43 l~~L~~L~l~~n~-i~~-l~-~l~~l~~L~~L~l~~n~-~~~~--~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTD-LT-GIEYAHNIKDLTINNIH-ATNY--NPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHTCCEEEEESSC-CSC-CT-TGGGCTTCSEEEEESCC-CSCC--GGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCC
T ss_pred cCCccEEeccCCC-ccC-hH-HHhcCCCCCEEEccCCC-CCcc--hhhhcCCCCCEEEeECC-ccCcccChhhcCCCCCC
Confidence 3456777777663 321 11 35666677777777664 4432 35666667777777766 55555556666666677
Q ss_pred EEEccCCCCCHhHHHHhcCCCCCCEEEcCCCC-CChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCC
Q 006752 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLP-VTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT 222 (632)
Q Consensus 144 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 222 (632)
+|++++|.+++..+..+..+++|++|++++|. +... + .+..+++|++|++++|.+++.. .+..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence 77777666666556666666666666666666 5443 2 4566666666666666665532 4555666666666666
Q ss_pred CCC
Q 006752 223 GVT 225 (632)
Q Consensus 223 ~l~ 225 (632)
.+.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 543
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=1e-16 Score=152.49 Aligned_cols=154 Identities=18% Similarity=0.249 Sum_probs=122.6
Q ss_pred CCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEc
Q 006752 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI 382 (632)
Q Consensus 303 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L 382 (632)
.+.++.+++.++... .. ..++|++|++++|.+++..+..+ +.+++|++|++++|+++...+..|..+++|++|+|
T Consensus 21 ~~~v~c~~~~l~~ip-~~---~~~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHASVP-AG---IPTNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCSSCC-SC---CCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcCccC-CC---CCCCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 456667666665322 21 22678888888888887666555 66888999999999888776677888999999999
Q ss_pred cCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCC
Q 006752 383 SNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV 462 (632)
Q Consensus 383 s~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l 462 (632)
++|++++..+. .|..+++|++|+|++|++
T Consensus 96 s~N~l~~l~~~---------------------------------------------------~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 96 GTNQLTVLPSA---------------------------------------------------VFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp CSSCCCCCCTT---------------------------------------------------TTTTCTTCCEEECCSSCC
T ss_pred CCCcCCccChh---------------------------------------------------HhCcchhhCeEeccCCcc
Confidence 99999876444 456788999999999999
Q ss_pred CCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752 463 SDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 513 (632)
Q Consensus 463 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 513 (632)
+. +|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++...
T Consensus 125 ~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 125 TE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 85 678888899999999999999988778889999999999999988753
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.6e-16 Score=146.75 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=120.6
Q ss_pred cEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhc
Q 006752 354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQV 433 (632)
Q Consensus 354 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 433 (632)
+.++++++.++.. |..+ .++|++|++++|.++. +|.
T Consensus 13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~~-ip~---------------------------------------- 48 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFTL-VPK---------------------------------------- 48 (193)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCCS-CCG----------------------------------------
T ss_pred CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCch-hHH----------------------------------------
Confidence 5677888877643 3222 3578899999998874 343
Q ss_pred ccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccC
Q 006752 434 GAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 513 (632)
Q Consensus 434 ~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 513 (632)
.|.++++|++|+|++|.+++..+..|..+++|++|+|++|+|++..+..|..+++|++|++++|++++.
T Consensus 49 -----------~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~ 117 (193)
T 2wfh_A 49 -----------ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117 (193)
T ss_dssp -----------GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred -----------HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCee
Confidence 577889999999999999998888899999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCcceEecCCCcccChHHHHHHHHHcC
Q 006752 514 GLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 548 (632)
Q Consensus 514 ~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~ 548 (632)
.+..|..+++|+.|++++|++.|+|.+.++..+..
T Consensus 118 ~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~ 152 (193)
T 2wfh_A 118 PEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVK 152 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred ChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHH
Confidence 88889999999999999999999998888777653
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=6.3e-18 Score=182.19 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=41.8
Q ss_pred cCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCC-CCCCCCCCCcce
Q 006752 448 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG-LGSFKPPRSLKL 526 (632)
Q Consensus 448 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~-~~~l~~~~~L~~ 526 (632)
.+++|+.|+|++|.++. +|..|+.+++|+.|+|++|+|++ +| .++.+++|+.|++++|++++.. |..+..+++|+.
T Consensus 461 ~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 461 QLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp GGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred ccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 34445555555555542 34445555555555555555554 23 4445555555555555555544 444555555555
Q ss_pred EecCCCcc
Q 006752 527 LDLHGGWL 534 (632)
Q Consensus 527 L~l~~N~l 534 (632)
|++++|++
T Consensus 538 L~L~~N~l 545 (567)
T 1dce_A 538 LNLQGNSL 545 (567)
T ss_dssp EECTTSGG
T ss_pred EEecCCcC
Confidence 55555554
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=4.5e-16 Score=173.09 Aligned_cols=196 Identities=16% Similarity=0.139 Sum_probs=119.5
Q ss_pred EccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccc
Q 006752 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAE 436 (632)
Q Consensus 357 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 436 (632)
+++.|.+. ..+..+..++.|+.|+|++|.+.. +|.
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-l~~------------------------------------------- 241 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFN-ISA------------------------------------------- 241 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSC-CCG-------------------------------------------
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCCC-CCh-------------------------------------------
Confidence 33444444 457778899999999999999985 454
Q ss_pred cccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCC
Q 006752 437 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG 516 (632)
Q Consensus 437 ~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~ 516 (632)
.+.++++|++|+|++|.|+ .+|..|+.+++|++|+|++|+|+. +|..|..+++|++|+|++|.|+. +|.
T Consensus 242 --------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~-lp~ 310 (727)
T 4b8c_D 242 --------NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT-LPW 310 (727)
T ss_dssp --------GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCCC-CCS
T ss_pred --------hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCCc-cCh
Confidence 2347889999999999999 588899999999999999999995 68899999999999999999985 588
Q ss_pred CCCCCCCcceEecCCCcccChHHHHHHHHHcCCeeeeeccccccCCCCCCCCCCCCCcchhhhhhhc----ccCCCCCCC
Q 006752 517 SFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVK----QKQDPMPMS 592 (632)
Q Consensus 517 ~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~ip~~~~~~~~~~n----~~~~~~~~~ 592 (632)
.|..+++|++|+|++|++ .+..+..+..... ......++.|.++|.+|..+..+....| ...|.++-.
T Consensus 311 ~~~~l~~L~~L~L~~N~l-~~~~p~~~~~~~~-------~~~~l~l~~N~l~~~~p~~l~~l~l~~n~~~~~~~~~l~~~ 382 (727)
T 4b8c_D 311 EFGNLCNLQFLGVEGNPL-EKQFLKILTEKSV-------TGLIFYLRDNRPEIPLPHERRFIEINTDGEPQREYDSLQQS 382 (727)
T ss_dssp STTSCTTCCCEECTTSCC-CSHHHHHHHHHHH-------HHHHHHHHHCCCCCCCCCC----------------------
T ss_pred hhhcCCCccEEeCCCCcc-CCCChHHHhhcch-------hhhHHhhccCcccCcCccccceeEeecccccccccCCcccc
Confidence 899999999999999998 5444444433221 1123457789999999999988875544 222322111
Q ss_pred ccchhcccccCHHHHHHhhccccccc
Q 006752 593 HSFLDQRLKYSREELLELQYSSLSLA 618 (632)
Q Consensus 593 ~~~~~~~~~~~~~~~l~l~~n~l~g~ 618 (632)
.. ..........+..+++|.+.+.
T Consensus 383 ~~--~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 383 TE--HLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp ---------------------CCCGG
T ss_pred cc--chhhcccccceeeeeccccccc
Confidence 10 0011233556788899998753
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=4.2e-17 Score=175.73 Aligned_cols=195 Identities=15% Similarity=0.171 Sum_probs=154.0
Q ss_pred hcCCCccEEeccCCCCCch-hhhhcCCCCCeeeccCCC-------------CCchHHHHHHhcCCCCcEEE-ccCCcCcc
Q 006752 276 IETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSM-------------IGDDSVEMVACVGANLRNLN-LSNTRFSS 340 (632)
Q Consensus 276 ~~~~~L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n~-------------l~~~~~~~~~~~~~~L~~L~-l~~n~l~~ 340 (632)
..++.|+.|++++|.++.+ ..++.+++|+.|++++|. ..+..|..+..+ ++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l-~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF-STLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH-HHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH-HhcccCcchhhcccch
Confidence 4578899999999998877 678888899999987664 455666777776 7888888 66664433
Q ss_pred hhH--------HHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhce
Q 006752 341 AGV--------GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLF 412 (632)
Q Consensus 341 ~~~--------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (632)
... ..+ ....|+.|++++|.+++. |. ++.+++|+.|++++|.++ .+|.
T Consensus 425 L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~------------------- 480 (567)
T 1dce_A 425 LRSKFLLENSVLKM--EYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPP------------------- 480 (567)
T ss_dssp HHHHHHHHHHHHHH--HHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCG-------------------
T ss_pred hhhhhhhccccccc--CccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccch-------------------
Confidence 211 111 123688999999998874 44 888999999999999988 4465
Q ss_pred eccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcc-h
Q 006752 413 LHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS-L 491 (632)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~ 491 (632)
.++++++|++|+|++|.+++ +| .++.+++|+.|+|++|+|++.. |
T Consensus 481 --------------------------------~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p 526 (567)
T 1dce_A 481 --------------------------------ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAI 526 (567)
T ss_dssp --------------------------------GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTT
T ss_pred --------------------------------hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCc
Confidence 57788999999999999998 56 8999999999999999999987 9
Q ss_pred hhhccCCCCcEEeecCceeccCCCCC---CCCCCCcceEec
Q 006752 492 HQLSSLSKLTNLSIRDAVLTNSGLGS---FKPPRSLKLLDL 529 (632)
Q Consensus 492 ~~~~~l~~L~~L~ls~N~l~~~~~~~---l~~~~~L~~L~l 529 (632)
..+..+++|+.|++++|++++..+.. +..+++|+.|++
T Consensus 527 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 527 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999999999999975532 223688888864
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=2.4e-15 Score=136.99 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=115.6
Q ss_pred CcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhh
Q 006752 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQ 432 (632)
Q Consensus 353 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (632)
.+.+++++++++... . ...++|++|++++|++++..+.
T Consensus 9 ~~~l~~~~~~l~~~p-~--~~~~~l~~L~l~~n~l~~~~~~--------------------------------------- 46 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-T--GIPSSATRLELESNKLQSLPHG--------------------------------------- 46 (177)
T ss_dssp TTEEECCSSCCSSCC-T--TCCTTCSEEECCSSCCCCCCTT---------------------------------------
T ss_pred CCEEEecCCCCccCC-C--CCCCCCcEEEeCCCcccEeCHH---------------------------------------
Confidence 467788888776533 2 2346899999999998875443
Q ss_pred cccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752 433 VGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 433 l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 512 (632)
.+.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++
T Consensus 47 ------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 114 (177)
T 2o6r_A 47 ------------VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS 114 (177)
T ss_dssp ------------TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ------------HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE
Confidence 45678899999999999998777778999999999999999999888889999999999999999998
Q ss_pred CCCCCCCCCCCcceEecCCCcccChHH-HHHHHHH
Q 006752 513 SGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKM 546 (632)
Q Consensus 513 ~~~~~l~~~~~L~~L~l~~N~l~~~~~-~~~~~~~ 546 (632)
..+..+..+++|++|++++|++.+.+. +.++..+
T Consensus 115 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~ 149 (177)
T 2o6r_A 115 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 149 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred eCHHHhcCCcccCEEEecCCCeeccCccHHHHHHH
Confidence 877778889999999999999988775 4444333
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=4.2e-16 Score=140.71 Aligned_cols=87 Identities=25% Similarity=0.277 Sum_probs=40.7
Q ss_pred cCCcccccccCccCCCCCccccccCcccccccccccccCCCcch-hhhccCCCCcEEeecCceeccCCC---CCCCCCCC
Q 006752 448 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSGL---GSFKPPRS 523 (632)
Q Consensus 448 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~~---~~l~~~~~ 523 (632)
.+++|++|++++|.+++..|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++++..+ ..+..+++
T Consensus 69 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 148 (168)
T 2ell_A 69 KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148 (168)
T ss_dssp CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence 34445555555555444434444444455555555555544321 344445555555555555544332 24444455
Q ss_pred cceEecCCCcc
Q 006752 524 LKLLDLHGGWL 534 (632)
Q Consensus 524 L~~L~l~~N~l 534 (632)
|++|++++|.+
T Consensus 149 L~~L~l~~n~~ 159 (168)
T 2ell_A 149 LTYLDGYDRED 159 (168)
T ss_dssp CCEETTEETTS
T ss_pred CcEecCCCCCh
Confidence 55555555543
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=3.6e-16 Score=138.03 Aligned_cols=127 Identities=23% Similarity=0.335 Sum_probs=79.2
Q ss_pred CCCcEEEccCCCCC-hHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccch
Q 006752 351 PNLEILSLSGTQID-DYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGF 429 (632)
Q Consensus 351 ~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (632)
++|++|++++|.++ +..|..+..+++|++|++++|.+++. .
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~------------------------------------ 58 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A------------------------------------ 58 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T------------------------------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h------------------------------------
Confidence 45666666666665 34444555666666666666666554 1
Q ss_pred hhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCc-chhhhccCCCCcEEeecCc
Q 006752 430 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDA 508 (632)
Q Consensus 430 l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~ls~N 508 (632)
.+..+++|++|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|
T Consensus 59 ---------------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 59 ---------------NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp ---------------TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred ---------------hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 244556666777777766665555555566677777777766663 2356666677777777777
Q ss_pred eeccCCC---CCCCCCCCcceEecC
Q 006752 509 VLTNSGL---GSFKPPRSLKLLDLH 530 (632)
Q Consensus 509 ~l~~~~~---~~l~~~~~L~~L~l~ 530 (632)
++++..+ ..+..+++|+.||++
T Consensus 124 ~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 124 EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred cccchHHHHHHHHHHCCCcccccCC
Confidence 7666544 355666667776665
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.1e-15 Score=138.06 Aligned_cols=134 Identities=28% Similarity=0.330 Sum_probs=105.8
Q ss_pred CCCcEEEccCCcCc-chhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhh
Q 006752 326 ANLRNLNLSNTRFS-SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYC 404 (632)
Q Consensus 326 ~~L~~L~l~~n~l~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 404 (632)
++|++|++++|.++ +..+..+ ..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~----------- 89 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM----------- 89 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-----------
T ss_pred ccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-----------
Confidence 56788888888776 3334333 5678888888888888765 5677888999999999988876444
Q ss_pred hhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCcc-ccccCccccccccccc
Q 006752 405 FMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRN 483 (632)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~ 483 (632)
.+..+++|++|++++|.+++... ..+..+++|++|++++
T Consensus 90 ----------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~ 129 (168)
T 2ell_A 90 ----------------------------------------LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129 (168)
T ss_dssp ----------------------------------------HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred ----------------------------------------HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence 45668899999999999988532 6788889999999999
Q ss_pred ccCCCcch---hhhccCCCCcEEeecCceeccC
Q 006752 484 ASLTDVSL---HQLSSLSKLTNLSIRDAVLTNS 513 (632)
Q Consensus 484 n~l~~~~~---~~~~~l~~L~~L~ls~N~l~~~ 513 (632)
|.+++..+ ..+..+++|++|++++|.+...
T Consensus 130 N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 130 CEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp SGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99988665 5788899999999999988764
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=3.3e-15 Score=137.89 Aligned_cols=67 Identities=16% Similarity=0.291 Sum_probs=37.7
Q ss_pred hhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752 446 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 446 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 512 (632)
|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++
T Consensus 74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 3445555555555555555555555555555555555555555555555555555555555555543
No 129
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.55 E-value=1.1e-15 Score=156.02 Aligned_cols=187 Identities=17% Similarity=0.178 Sum_probs=93.9
Q ss_pred CCCCeeeccCCCCCchHHHHHHhc----CCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHh----
Q 006752 301 KALEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS---- 372 (632)
Q Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---- 372 (632)
+.|+.|++++|.+++.....+... +++|++|++++|.+++.....++..+++|++|++++|.+++.....++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 445555555555554444433332 135566666666655554444444455566666666666555444442
Q ss_pred -cCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCc
Q 006752 373 -MMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNH 451 (632)
Q Consensus 373 -~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~ 451 (632)
..++|++|+|++|.++......+. ..+..+++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~-----------------------------------------------~~L~~~~~ 184 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLM-----------------------------------------------EGLAGNTS 184 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHH-----------------------------------------------HHHHTCSS
T ss_pred hcCCccceeeCCCCCCChHHHHHHH-----------------------------------------------HHHhcCCC
Confidence 245566666666655432111000 13344556
Q ss_pred ccccccCccCCCCCc----cccccCcccccccccccccCCCcch----hhhccCCCCcEEeecCceeccCCCCCCCCC--
Q 006752 452 LERLNLEQTQVSDAT----LFPLSTFKELIHLSLRNASLTDVSL----HQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-- 521 (632)
Q Consensus 452 L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~-- 521 (632)
|++|+|++|.+++.. +..+...++|++|+|++|.|++... ..+..+++|++|+|++|.|+......+...
T Consensus 185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~ 264 (372)
T 3un9_A 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGG 264 (372)
T ss_dssp CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC-
T ss_pred cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhc
Confidence 666666666665432 2334445566666666666665332 233455667777777776665544333222
Q ss_pred -C--CcceEe--cCCCcc
Q 006752 522 -R--SLKLLD--LHGGWL 534 (632)
Q Consensus 522 -~--~L~~L~--l~~N~l 534 (632)
. .|+.+. +..|.+
T Consensus 265 ~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 265 AAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp -----CEEECCCC----C
T ss_pred CCCccchhhHhhhcCCcc
Confidence 1 166666 666665
No 130
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=1.1e-14 Score=150.79 Aligned_cols=334 Identities=15% Similarity=0.184 Sum_probs=161.1
Q ss_pred CCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHH
Q 006752 103 VTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLR 182 (632)
Q Consensus 103 i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 182 (632)
++..+..+|.+|.+|+.+.+.. .++..+..+|.+|++|+.+++..+ ++.....+|.++++|+.+.+..+ +......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 4445566777888888888865 356666677777788888877654 44444556777777776655433 2222334
Q ss_pred hccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhcccc-CCCCCcEEEe
Q 006752 183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISL 261 (632)
Q Consensus 183 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l 261 (632)
+|.++..++...... +......+|..+++|+.+.+..+ +..++...+ .+.+|+.+.+
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~--------------------~~~I~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS--------------------METLHNGLFSGCGKLKSIKL 192 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT--------------------CCEECTTTTTTCTTCCBCCC
T ss_pred eeecccccccccCcc--ccccchhhhcccCCCcEEecCCc--------------------cceeccccccCCCCceEEEc
Confidence 444443332222211 12222334555555555544332 112222222 3444444444
Q ss_pred eCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcch
Q 006752 262 AGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA 341 (632)
Q Consensus 262 ~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 341 (632)
..+ +..+. ...+..+..|+.+.+..+...-......+..|+.+.+... ++......+..+ ..++.+.+..+... .
T Consensus 193 ~~~-~~~I~-~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~-~~l~~~~~~~~~~~-i 267 (394)
T 4fs7_A 193 PRN-LKIIR-DYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGC-TDLESISIQNNKLR-I 267 (394)
T ss_dssp CTT-CCEEC-TTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTC-SSCCEEEECCTTCE-E
T ss_pred CCC-ceEeC-chhhccccccceeecCCCceEeehhhcccCCCceEEECCC-ceeccccccccc-ccceeEEcCCCcce-e
Confidence 332 11111 1133344444444443332211122222344444444332 111111122222 44555555443211 1
Q ss_pred hHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccccc
Q 006752 342 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIF 421 (632)
Q Consensus 342 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (632)
....+ ..++.++.+....+.+.. .+|..+.+|+.+.+..+ +... +.
T Consensus 268 ~~~~F-~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I-~~---------------------------- 313 (394)
T 4fs7_A 268 GGSLF-YNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFI-GE---------------------------- 313 (394)
T ss_dssp CSCTT-TTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEE-CT----------------------------
T ss_pred ecccc-ccccccceeccCceeecc---ccccccccccccccccc-ccee-ch----------------------------
Confidence 11111 345555555554443321 23455566666655433 2221 11
Q ss_pred ccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCc
Q 006752 422 PSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT 501 (632)
Q Consensus 422 ~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 501 (632)
.+|.+|.+|+.++|.++ ++.+...+|.++++|+.+++..+ ++.+...+|.+|++|+
T Consensus 314 ----------------------~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 314 ----------------------EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp ----------------------TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ----------------------hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 25666677777777543 55555566767777777777655 5555566677777777
Q ss_pred EEeecCceeccCCCCCCCCCCCcceE
Q 006752 502 NLSIRDAVLTNSGLGSFKPPRSLKLL 527 (632)
Q Consensus 502 ~L~ls~N~l~~~~~~~l~~~~~L~~L 527 (632)
.+++..+ ++.. ...|.++++|+.+
T Consensus 370 ~i~lp~~-~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 370 KVELPKR-LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp EEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred EEEECCC-CEEh-hheecCCCCCcEE
Confidence 7777654 2221 3456666666654
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.1e-14 Score=128.51 Aligned_cols=128 Identities=25% Similarity=0.335 Sum_probs=95.9
Q ss_pred CCCccEEEcCCCCCCC-chhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCC
Q 006752 89 FRYLRSLNVADCRRVT-SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS 167 (632)
Q Consensus 89 ~~~L~~L~L~~~~~i~-~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 167 (632)
.++|++|++++|. ++ ...+..+..+++|++|++++| .++.. ..+..+++|++|++++|.+++..|..+..+++|+
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 3567777777776 55 334445667778888888887 55554 6677788888888888888776677777788888
Q ss_pred EEEcCCCCCChH-HHHhccCCCCccEEEecCCCCCchhh---HhhcCCCCCcEEEcc
Q 006752 168 VLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRGA---AVLKMFPRLSFLNLA 220 (632)
Q Consensus 168 ~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~ 220 (632)
+|++++|.+++. .+..++.+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 888888888774 34678888888888888888877655 567888888888775
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=5.7e-14 Score=144.66 Aligned_cols=264 Identities=10% Similarity=0.141 Sum_probs=166.3
Q ss_pred CCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCC
Q 006752 187 LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 266 (632)
Q Consensus 187 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~ 266 (632)
+..++.+.+.. .++.....+|.++ +|+.+.+..+ ++.+....+...+|+++.+.. .+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--------------------i~~I~~~aF~~~~L~~i~lp~-~l 168 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--------------------LKSIGDMAFFNSTVQEIVFPS-TL 168 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--------------------CCEECTTTTTTCCCCEEECCT-TC
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--------------------ccEECHHhcCCCCceEEEeCC-Cc
Confidence 35555555543 2344444455543 4555555443 333333333223445544443 23
Q ss_pred CchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHH
Q 006752 267 INEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVG 344 (632)
Q Consensus 267 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 344 (632)
..+... .|..|.+|+.+++++|.++.+ .+|. +.+|+.+.+..+ +......+|..+ ++|+.+++..+ ++.....
T Consensus 169 ~~I~~~-aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~-~~L~~l~l~~~-l~~I~~~ 243 (401)
T 4fdw_A 169 EQLKED-IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKT-SQLKTIEIPEN-VSTIGQE 243 (401)
T ss_dssp CEECSS-TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTC-TTCCCEECCTT-CCEECTT
T ss_pred cEehHH-HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCC-CCCCEEecCCC-ccCcccc
Confidence 332221 344555555555555555544 2333 355666666533 443444444444 56666666553 3434444
Q ss_pred HHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccc----cCCCccchhhhhhhhhhhhhceeccccccc
Q 006752 345 ILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGM----YPSGQMNVFFSAYCFMIVYNLFLHAYGYVI 420 (632)
Q Consensus 345 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (632)
.| .. .+|+.+.+. +.++.....+|.+|++|+.+++.+|.+... ++.
T Consensus 244 aF-~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~--------------------------- 293 (401)
T 4fdw_A 244 AF-RE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP--------------------------- 293 (401)
T ss_dssp TT-TT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT---------------------------
T ss_pred cc-cc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH---------------------------
Confidence 44 22 578888874 446656667788888888888887766511 222
Q ss_pred cccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCC
Q 006752 421 FPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 500 (632)
Q Consensus 421 ~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 500 (632)
.+|.+|++|+.++|. +.++.+...+|.++++|+.+.|..+ ++.+...+|.++ +|
T Consensus 294 -----------------------~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L 347 (401)
T 4fdw_A 294 -----------------------YCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GI 347 (401)
T ss_dssp -----------------------TTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CC
T ss_pred -----------------------HHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CC
Confidence 368899999999999 4588878889999999999999655 777788899999 99
Q ss_pred cEEeecCceeccCCCCCCCCC-CCcceEecCCCcc
Q 006752 501 TNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWL 534 (632)
Q Consensus 501 ~~L~ls~N~l~~~~~~~l~~~-~~L~~L~l~~N~l 534 (632)
+.+++++|.+.......|.++ ..++.|++..+.+
T Consensus 348 ~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 348 KEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 999999999988888888888 4789999988875
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=132.19 Aligned_cols=128 Identities=23% Similarity=0.238 Sum_probs=104.7
Q ss_pred cEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhh
Q 006752 329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIV 408 (632)
Q Consensus 329 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~ 408 (632)
+.++++++.++.... +-.++|++|++++|.++. +|..|..+++|++|++++|.+++..+.
T Consensus 13 ~~l~~~~~~l~~ip~----~~~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~--------------- 72 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK----GIPRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQ--------------- 72 (193)
T ss_dssp TEEECTTSCCSSCCS----CCCTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTT---------------
T ss_pred CEEEcCCCCCCcCCC----CCCCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHh---------------
Confidence 467777777664332 124578888888888874 446788899999999999999886554
Q ss_pred hhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCC
Q 006752 409 YNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 488 (632)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 488 (632)
.|.++++|++|+|++|.+++..+..|..+++|++|+|++|+|++
T Consensus 73 ------------------------------------~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 73 ------------------------------------SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp ------------------------------------TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred ------------------------------------HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence 46778899999999999999888889999999999999999998
Q ss_pred cchhhhccCCCCcEEeecCceecc
Q 006752 489 VSLHQLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 489 ~~~~~~~~l~~L~~L~ls~N~l~~ 512 (632)
..+..|..+++|+.|++++|++..
T Consensus 117 ~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 117 VPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred eChhhhhcCccccEEEeCCCCeec
Confidence 877789999999999999998874
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=2.3e-14 Score=130.38 Aligned_cols=131 Identities=15% Similarity=0.206 Sum_probs=101.3
Q ss_pred CcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhh
Q 006752 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMI 407 (632)
Q Consensus 328 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~ 407 (632)
.+.+++++++++.... +..++|++|++++|++++..+..+..+++|++|++++|.+++..+.
T Consensus 9 ~~~l~~~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------- 70 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT----GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG-------------- 70 (177)
T ss_dssp TTEEECCSSCCSSCCT----TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT--------------
T ss_pred CCEEEecCCCCccCCC----CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh--------------
Confidence 4567777777665432 2346788888888888776666677888888888888888865443
Q ss_pred hhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCC
Q 006752 408 VYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 487 (632)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 487 (632)
.+.++++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 71 -------------------------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 71 -------------------------------------VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp -------------------------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred -------------------------------------HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence 3567788888999988888877777788888999999999888
Q ss_pred CcchhhhccCCCCcEEeecCceeccC
Q 006752 488 DVSLHQLSSLSKLTNLSIRDAVLTNS 513 (632)
Q Consensus 488 ~~~~~~~~~l~~L~~L~ls~N~l~~~ 513 (632)
+..+..+..+++|++|++++|++++.
T Consensus 114 ~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 114 SVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EeCHHHhcCCcccCEEEecCCCeecc
Confidence 87777778888899999998888764
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.49 E-value=2.9e-14 Score=147.55 Aligned_cols=324 Identities=12% Similarity=0.139 Sum_probs=208.9
Q ss_pred HHhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCC
Q 006752 84 AYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSL 163 (632)
Q Consensus 84 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l 163 (632)
.+|.+|.+|+++.+.. . ++.....+|.+|++|+.+++..+ ++..+..+|.++..|+.+.+..+ +......+|.++
T Consensus 65 ~AF~~c~~L~~i~lp~-~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-T-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTCTTEEEEECCT-T-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHhhCCCCceEEEeCC-C-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 5688999999999975 3 77788889999999999999864 56677788899999999888754 444455678777
Q ss_pred CCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCC-----CCCCCCCCCEEEC
Q 006752 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT-----KLPNISSLECLNL 238 (632)
Q Consensus 164 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-----~l~~l~~L~~L~L 238 (632)
..++........ .....+|.++++|+.+.+..+ +......+|..+++|+.+.+..+ +. .+.++..|+.+.+
T Consensus 140 ~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 140 DFKEITIPEGVT--VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CCSEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred cccccccCcccc--ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 655544444333 223467899999999999765 34455667888888888888665 22 2445566666655
Q ss_pred CCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCchhhhhcCCCCCeeeccCCCCCchHH
Q 006752 239 SNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV 318 (632)
Q Consensus 239 ~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~l~~~~~L~~L~l~~n~l~~~~~ 318 (632)
..+.. .+....+.+.+|+.+.+... ...+.. ..+..+..++.+.+..+... ...
T Consensus 216 ~~~~~-~i~~~~~~~~~l~~i~ip~~-~~~i~~-----------------------~~f~~~~~l~~~~~~~~~~~-i~~ 269 (394)
T 4fs7_A 216 PNSLY-YLGDFALSKTGVKNIIIPDS-FTELGK-----------------------SVFYGCTDLESISIQNNKLR-IGG 269 (394)
T ss_dssp CTTCC-EECTTTTTTCCCCEEEECTT-CCEECS-----------------------STTTTCSSCCEEEECCTTCE-ECS
T ss_pred CCCce-EeehhhcccCCCceEEECCC-ceeccc-----------------------ccccccccceeEEcCCCcce-eec
Confidence 44322 22333344555555555432 111111 23444445555555443211 111
Q ss_pred HHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccch
Q 006752 319 EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNV 398 (632)
Q Consensus 319 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 398 (632)
..+... ..++.+......+... . +..|.+|+.+.+..+ ++.....+|.+|.+|+.+++..+ ++.. +.
T Consensus 270 ~~F~~~-~~l~~~~~~~~~i~~~---~-F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I-~~----- 336 (394)
T 4fs7_A 270 SLFYNC-SGLKKVIYGSVIVPEK---T-FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEI-GK----- 336 (394)
T ss_dssp CTTTTC-TTCCEEEECSSEECTT---T-TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEE-CT-----
T ss_pred cccccc-cccceeccCceeeccc---c-ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEE-hH-----
Confidence 222222 5555555554432221 1 245778888887654 55555667888888888888643 4332 22
Q ss_pred hhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccc
Q 006752 399 FFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 478 (632)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 478 (632)
.+|.+|.+|+.+++..+ ++.+...+|.+|++|+.
T Consensus 337 ---------------------------------------------~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 337 ---------------------------------------------RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp ---------------------------------------------TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred ---------------------------------------------HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 26788888999988776 77767788888999999
Q ss_pred cccccccCCCcchhhhccCCCCcEE
Q 006752 479 LSLRNASLTDVSLHQLSSLSKLTNL 503 (632)
Q Consensus 479 L~Ls~n~l~~~~~~~~~~l~~L~~L 503 (632)
+++..+ ++. +..+|.++++|+++
T Consensus 371 i~lp~~-~~~-~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 371 VELPKR-LEQ-YRYDFEDTTKFKWI 393 (394)
T ss_dssp EEEEGG-GGG-GGGGBCTTCEEEEE
T ss_pred EEECCC-CEE-hhheecCCCCCcEE
Confidence 988765 222 34578888888765
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=8.3e-15 Score=133.17 Aligned_cols=130 Identities=22% Similarity=0.243 Sum_probs=96.8
Q ss_pred cCCCCcEEEccCCCCChHHHHHHhcC-CCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccccccccccc
Q 006752 349 HLPNLEILSLSGTQIDDYAISYMSMM-PSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLA 427 (632)
Q Consensus 349 ~~~~L~~L~L~~n~l~~~~~~~l~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (632)
.+++|++|++++|+++.. +. +..+ ++|++|++++|.+++. .
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~---------------------------------- 58 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--D---------------------------------- 58 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--C----------------------------------
T ss_pred CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--c----------------------------------
Confidence 456778888888877743 32 4433 4888888888888764 2
Q ss_pred chhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcch-hhhccCCCCcEEeec
Q 006752 428 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIR 506 (632)
Q Consensus 428 ~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ls 506 (632)
.+..+++|++|++++|.+++..+..+..+++|++|++++|+++...+ ..+..+++|+.|+++
T Consensus 59 -----------------~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 59 -----------------GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp -----------------CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred -----------------ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 25567888888888888887544555788888888888888876432 378888889999999
Q ss_pred CceeccCCCC----CCCCCCCcceEecCCCcc
Q 006752 507 DAVLTNSGLG----SFKPPRSLKLLDLHGGWL 534 (632)
Q Consensus 507 ~N~l~~~~~~----~l~~~~~L~~L~l~~N~l 534 (632)
+|+++.. |. .+..+++|+.||+++|..
T Consensus 122 ~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 122 RNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp SSGGGGS-TTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCCCc-HhHHHHHHHHCCccceeCCCcCCH
Confidence 9988865 44 377788899999999875
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=9.2e-14 Score=125.26 Aligned_cols=95 Identities=24% Similarity=0.243 Sum_probs=87.2
Q ss_pred CcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEec
Q 006752 450 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 529 (632)
Q Consensus 450 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l 529 (632)
++|++|+|++|++++..+..|..+++|++|+|++|+|+++.+..|..+++|++|++++|+|++..+..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 68999999999999988999999999999999999999988888999999999999999999988888999999999999
Q ss_pred CCCcccChHH-HHHHH
Q 006752 530 HGGWLLTEDA-ILQFC 544 (632)
Q Consensus 530 ~~N~l~~~~~-~~~~~ 544 (632)
++|++.|.+. +.++.
T Consensus 110 ~~N~~~c~c~~l~~l~ 125 (170)
T 3g39_A 110 LNNPWDCACSDILYLS 125 (170)
T ss_dssp CSSCBCTTBGGGHHHH
T ss_pred CCCCCCCCchhHHHHH
Confidence 9999988874 44433
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=1.4e-14 Score=160.96 Aligned_cols=176 Identities=9% Similarity=0.051 Sum_probs=93.2
Q ss_pred hHhhcCCCCCcEEEccCCCCCCCC----CCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCC
Q 006752 205 AAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSL 280 (632)
Q Consensus 205 ~~~l~~l~~L~~L~l~~n~l~~l~----~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 280 (632)
+..+..++.|+.|+|++|.+..++ .+++|++|+|++|.++.+|..+..+++|++|+|++|.++.+|.. +..+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~--~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE--LGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS--GGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh--hcCCCC
Confidence 334444555555555555544433 35666667777777777777777777777777777777766543 346777
Q ss_pred ccEEeccCCCCCch-hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEcc
Q 006752 281 LSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 359 (632)
Q Consensus 281 L~~L~ls~n~l~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 359 (632)
|++|+|++|.++.+ ..+..+++|++|+|++|.+++..|..+.........+++++|.+++..+ ..|+.|+++
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-------~~l~~l~l~ 367 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-------HERRFIEIN 367 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CC-------
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-------cccceeEee
Confidence 88888888877766 4578888899999999999888887776542223346788888876433 356677777
Q ss_pred CC--------CCChHHHHHHhcCCCccEEEccCCcccc
Q 006752 360 GT--------QIDDYAISYMSMMPSLKFIDISNTDIKG 389 (632)
Q Consensus 360 ~n--------~l~~~~~~~l~~~~~L~~L~Ls~n~i~~ 389 (632)
+| .+.+..+..+..+..+....+++|-+.+
T Consensus 368 ~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 368 TDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ----------------------------------CCCG
T ss_pred cccccccccCCccccccchhhcccccceeeeecccccc
Confidence 66 3334444445566667777788887654
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=1.4e-13 Score=141.75 Aligned_cols=238 Identities=14% Similarity=0.193 Sum_probs=178.1
Q ss_pred CCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeec
Q 006752 231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDL 308 (632)
Q Consensus 231 ~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l 308 (632)
..++.+.+.. .++.++...+...+|+.+.+..+ +..+... +|..+ +|+.+.+.. .+..+ .+|..|++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~-aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDM-AFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTT-TTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHH-hcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 4566666654 45666666664457999988766 5555443 45554 688888876 56555 67888889999999
Q ss_pred cCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccc
Q 006752 309 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 388 (632)
Q Consensus 309 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~ 388 (632)
+.|.++......+. . .+|+.+.+..+ +.......| ..|++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++
T Consensus 188 ~~n~l~~I~~~aF~-~-~~L~~l~lp~~-l~~I~~~aF-~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 188 SKTKITKLPASTFV-Y-AGIEEVLLPVT-LKEIGSQAF-LKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp TTSCCSEECTTTTT-T-CCCSEEECCTT-CCEECTTTT-TTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred CCCcceEechhhEe-e-cccCEEEeCCc-hheehhhHh-hCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 88888766555554 3 78888888754 555555555 56888888888765 55555566666 678888884 3344
Q ss_pred cccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCC-----
Q 006752 389 GMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS----- 463 (632)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~----- 463 (632)
.. +. .+|.+|++|+.+++.+|.+.
T Consensus 261 ~I-~~--------------------------------------------------~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 261 NI-AS--------------------------------------------------RAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp EE-CT--------------------------------------------------TTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred EE-Ch--------------------------------------------------hHhhCCCCCCEEEeCCccccCCccc
Confidence 33 22 36889999999999998775
Q ss_pred CCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752 464 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 534 (632)
Q Consensus 464 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l 534 (632)
.....+|.+|++|+.++|. +.++.+...+|.+|++|+.+++.+| ++.+...+|.++ +|+.+++++|..
T Consensus 290 ~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp EECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred EECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 4567889999999999999 5588888889999999999999665 888888999999 999999999975
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=2.5e-14 Score=130.02 Aligned_cols=131 Identities=18% Similarity=0.239 Sum_probs=89.4
Q ss_pred CCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhh
Q 006752 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCF 405 (632)
Q Consensus 326 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 405 (632)
++|++|++++|+++.. + .+....++|++|++++|.+++. ..+..+++|++|++++|.+++..+.
T Consensus 19 ~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~------------ 82 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG------------ 82 (176)
T ss_dssp TSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC------------
T ss_pred CCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcc------------
Confidence 4566666666665543 1 1223344777777777777654 4567778888888888888765333
Q ss_pred hhhhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccc--cccCccccccccccc
Q 006752 406 MIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF--PLSTFKELIHLSLRN 483 (632)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~ 483 (632)
.+..+++|++|++++|.++. +|. .+..+++|+.|++++
T Consensus 83 ---------------------------------------~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~ 122 (176)
T 1a9n_A 83 ---------------------------------------LDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILR 122 (176)
T ss_dssp ---------------------------------------HHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCS
T ss_pred ---------------------------------------hhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecC
Confidence 35677788888888888866 343 677788888888888
Q ss_pred ccCCCcchh---hhccCCCCcEEeecCceecc
Q 006752 484 ASLTDVSLH---QLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 484 n~l~~~~~~---~~~~l~~L~~L~ls~N~l~~ 512 (632)
|.++...+. .+..+++|+.||+++|.+..
T Consensus 123 N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 123 NPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp SGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 888764322 47788888888888887654
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=8.8e-16 Score=142.62 Aligned_cols=129 Identities=24% Similarity=0.251 Sum_probs=86.2
Q ss_pred hcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceecccccccccccccc
Q 006752 348 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLA 427 (632)
Q Consensus 348 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (632)
+.+++|++|++++|.+++ +| .+..+++|++|++++|.++. +|.
T Consensus 45 ~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~---------------------------------- 87 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IEN---------------------------------- 87 (198)
T ss_dssp HHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSS----------------------------------
T ss_pred hcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccc----------------------------------
Confidence 457777777777777665 33 56677777777777777764 343
Q ss_pred chhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcch-hhhccCCCCcEEeec
Q 006752 428 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIR 506 (632)
Q Consensus 428 ~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ls 506 (632)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|+++
T Consensus 88 -----------------~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 88 -----------------LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp -----------------HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred -----------------hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence 24445677777777777776 33 56677777777777777776443 467777777777777
Q ss_pred CceeccCCCCC----------CCCCCCcceEecCCCcc
Q 006752 507 DAVLTNSGLGS----------FKPPRSLKLLDLHGGWL 534 (632)
Q Consensus 507 ~N~l~~~~~~~----------l~~~~~L~~L~l~~N~l 534 (632)
+|++++..|.. +..+++|+.|| +|++
T Consensus 149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 77776654442 55667777766 5554
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.46 E-value=3.1e-13 Score=137.77 Aligned_cols=162 Identities=19% Similarity=0.220 Sum_probs=112.2
Q ss_pred HhhcCcccEEeccCCCCCCHHHHHHhc-----cCCCccEEEcCCCCCCCchhHHhhh-CCCCcCEEeccCCCCCChhhHh
Q 006752 61 EVFKHNAEAIELRGENSVDAEWMAYLG-----AFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMK 134 (632)
Q Consensus 61 ~~~~~~l~~L~Ls~~~~~~~~~~~~~~-----~~~~L~~L~L~~~~~i~~~~~~~l~-~l~~L~~L~L~~~~~l~~~~~~ 134 (632)
....+.+++|+|++|. ++......+. ..++|++|+|++|. +++.....+. .+++|++|+|++| .+++.+..
T Consensus 68 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~ 144 (372)
T 3un9_A 68 AEVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACK 144 (372)
T ss_dssp HHHHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHH
T ss_pred HHHHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHH
Confidence 3345678899999884 5544333332 23689999999888 7777666665 5678889999988 78877766
Q ss_pred hhc-----CCCCccEEEccCCCCCHhHH----HHhcCCCCCCEEEcCCCCCChHH----HHhccCCCCccEEEecCCCCC
Q 006752 135 HLL-----SISTLEKLWLSETGLTADGI----ALLSSLQNLSVLDLGGLPVTDLV----LRSLQVLTKLEYLDLWGSQVS 201 (632)
Q Consensus 135 ~l~-----~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~L~~n~l~ 201 (632)
.++ ..++|++|+|++|.++.... ..+..+++|++|+|++|.+++.. +..+...++|++|++++|.++
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 663 46788888888888876443 34467888888888888887654 445566778888888888887
Q ss_pred chhhHh----hcCCCCCcEEEccCCCCC
Q 006752 202 NRGAAV----LKMFPRLSFLNLAWTGVT 225 (632)
Q Consensus 202 ~~~~~~----l~~l~~L~~L~l~~n~l~ 225 (632)
+..... +...++|++|++++|.++
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 654433 334455555555555444
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=2.8e-13 Score=122.50 Aligned_cols=90 Identities=22% Similarity=0.238 Sum_probs=84.5
Q ss_pred CcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEec
Q 006752 450 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 529 (632)
Q Consensus 450 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l 529 (632)
++|++|+|++|++++..|..|..+++|++|+|++|+|+++.+..|..+++|++|++++|+|++..+..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 68999999999999988999999999999999999999988878899999999999999999987777999999999999
Q ss_pred CCCcccChHH
Q 006752 530 HGGWLLTEDA 539 (632)
Q Consensus 530 ~~N~l~~~~~ 539 (632)
++|++.+.+.
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999988774
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=2.2e-15 Score=139.86 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=111.4
Q ss_pred hhcCCCCCeeeccCCCCCchHHH------HHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEccCCCCChHHHHH
Q 006752 297 LTQMKALEHLDLSSSMIGDDSVE------MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 370 (632)
Q Consensus 297 l~~~~~L~~L~l~~n~l~~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 370 (632)
+.....++.++++.+.+.+..+. .+..+ ++|++|++++|++++.. .+ ..+++|++|++++|.++. +|..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l-~~L~~L~ls~n~l~~l~--~~-~~l~~L~~L~l~~n~l~~-l~~~ 88 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTL-KACKHLALSTNNIEKIS--SL-SGMENLRILSLGRNLIKK-IENL 88 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHT-TTCSEEECSEEEESCCC--CH-HHHTTCCEEEEEEEEECS-CSSH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcC-CCCCEEECCCCCCcccc--cc-ccCCCCCEEECCCCCccc-ccch
Confidence 34445555555555555544333 66666 88888888888887743 33 567888888888888773 4555
Q ss_pred HhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhcccccccccchHHhhcCC
Q 006752 371 MSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLN 450 (632)
Q Consensus 371 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~ 450 (632)
+..+++|++|++++|++++. | .+..++
T Consensus 89 ~~~~~~L~~L~L~~N~l~~l-~----------------------------------------------------~~~~l~ 115 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIASL-S----------------------------------------------------GIEKLV 115 (198)
T ss_dssp HHHHHHCSEEEEEEEECCCH-H----------------------------------------------------HHHHHH
T ss_pred hhcCCcCCEEECcCCcCCcC-C----------------------------------------------------ccccCC
Confidence 66678888888888888763 2 356677
Q ss_pred cccccccCccCCCCCcc-ccccCcccccccccccccCCCcchh----------hhccCCCCcEEeecCceecc
Q 006752 451 HLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDVSLH----------QLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 451 ~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~ls~N~l~~ 512 (632)
+|++|++++|.+++..+ ..+..+++|++|++++|.+++..|. .+..+++|+.|| +|.++.
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 88888888888887433 4677888899999999888776554 378899999887 666654
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.36 E-value=2.4e-12 Score=133.08 Aligned_cols=330 Identities=12% Similarity=0.155 Sum_probs=164.1
Q ss_pred hHHhhhCCC-CcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCC---CCHhHHHHhcCCCCCCEEEcCCCCCChHHHH
Q 006752 107 ALWALTGMT-CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG---LTADGIALLSSLQNLSVLDLGGLPVTDLVLR 182 (632)
Q Consensus 107 ~~~~l~~l~-~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 182 (632)
+..+|.+++ .|+.+.+.. .++..+..+|.+|.+|+.+.+..+. ++.....+|..+.+|+.+.+..+ +......
T Consensus 55 g~~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp CTTTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred CHhhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 344555553 366666654 2455555556666666666665442 33333445555555555544332 2222233
Q ss_pred hccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEee
Q 006752 183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLA 262 (632)
Q Consensus 183 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~ 262 (632)
+|..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +..+....+....|+.+.+.
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--------------------~~~I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--------------------VTAIEERAFTGTALTQIHIP 190 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--------------------CCEECTTTTTTCCCSEEEEC
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce--------------------eeEeccccccccceeEEEEC
Confidence 4455555555555432 22233334444444444443321 23333334444455555554
Q ss_pred CCCCCchhhhhhhhcCCCccEEeccCCCCCch--hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcc
Q 006752 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340 (632)
Q Consensus 263 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 340 (632)
.+.. .+ ....+..+..+............. ..+............. ... ..+..+.+.. .++.
T Consensus 191 ~~~~-~i-~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~ip~-~v~~ 255 (394)
T 4gt6_A 191 AKVT-RI-GTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRY-----------PSQ-REDPAFKIPN-GVAR 255 (394)
T ss_dssp TTCC-EE-CTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC-----------CTT-CCCSEEECCT-TEEE
T ss_pred Cccc-cc-ccchhhhccccceecccccccccccceeeccccccccccccc-----------ccc-cccceEEcCC-cceE
Confidence 3311 11 111334455555554443333222 0011111000000000 000 2333333322 1222
Q ss_pred hhHHHHHhcCCCCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccc
Q 006752 341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVI 420 (632)
Q Consensus 341 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (632)
.....| ..|+.|+.+.+..+. ......+|.+|+.|+.+.+.. .++.. +.
T Consensus 256 i~~~aF-~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I-~~--------------------------- 304 (394)
T 4gt6_A 256 IETHAF-DSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITEL-PE--------------------------- 304 (394)
T ss_dssp ECTTTT-TTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEE-CT---------------------------
T ss_pred ccccee-eecccccEEeccccc-ceecCcccccccccccccCCC-ccccc-Cc---------------------------
Confidence 222333 557788888876553 234455677888888888753 33332 32
Q ss_pred cccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCC
Q 006752 421 FPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 500 (632)
Q Consensus 421 ~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 500 (632)
.+|.+|.+|+.++|..+ ++.+...+|.+|++|+.+.+..+ ++.+...+|.+|++|
T Consensus 305 -----------------------~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 305 -----------------------SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp -----------------------TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred -----------------------eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 26788888888888764 66666778888888888888654 677677788888888
Q ss_pred cEEeecCceeccCCCCCCCCCCCcceEecCCCcc
Q 006752 501 TNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 534 (632)
Q Consensus 501 ~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l 534 (632)
+.+++.++.... ..+..+..|+.+.+..|.+
T Consensus 360 ~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 360 NNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 888888876542 4566677888888777653
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=1.7e-12 Score=116.88 Aligned_cols=108 Identities=17% Similarity=0.272 Sum_probs=84.9
Q ss_pred CCcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhh
Q 006752 352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQ 431 (632)
Q Consensus 352 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (632)
..+.+++++|.++.. |..+ .++|++|++++|.+++..|.
T Consensus 10 ~~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~-------------------------------------- 48 (170)
T 3g39_A 10 SGTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPG-------------------------------------- 48 (170)
T ss_dssp ETTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTT--------------------------------------
T ss_pred CCCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChh--------------------------------------
Confidence 356777888777653 3322 36788888888888887565
Q ss_pred hcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceec
Q 006752 432 QVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 511 (632)
Q Consensus 432 ~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~ 511 (632)
.|.++++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|++++|+++
T Consensus 49 -------------~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 49 -------------VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp -------------TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -------------hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 4667788899999999988877777888889999999999998877777888899999999999887
Q ss_pred cC
Q 006752 512 NS 513 (632)
Q Consensus 512 ~~ 513 (632)
..
T Consensus 116 c~ 117 (170)
T 3g39_A 116 CA 117 (170)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=3.7e-12 Score=129.32 Aligned_cols=113 Identities=20% Similarity=0.200 Sum_probs=98.0
Q ss_pred ccccc-cccchHHhhcCCcccccccCc-cCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceec
Q 006752 434 GAETD-LVLSLTALQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 511 (632)
Q Consensus 434 ~~~~~-~l~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~ 511 (632)
+++++ .+..++.+..+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|+
T Consensus 14 ~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred EcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 44444 454444478889999999996 9999988889999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHc
Q 006752 512 NSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH 547 (632)
Q Consensus 512 ~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~ 547 (632)
+..+..|..++ |+.|++.+|++.|+|.+.++..+.
T Consensus 94 ~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~ 128 (347)
T 2ifg_A 94 SLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWE 128 (347)
T ss_dssp CCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHH
T ss_pred eeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHH
Confidence 98777777665 999999999999999887777665
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=3.7e-12 Score=115.08 Aligned_cols=107 Identities=12% Similarity=0.229 Sum_probs=82.9
Q ss_pred CcEEEccCCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhh
Q 006752 353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQ 432 (632)
Q Consensus 353 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (632)
-+.+++++|.++. +|..+ .++|++|++++|.+++..|.
T Consensus 14 ~~~l~~~~n~l~~-iP~~~--~~~L~~L~Ls~N~l~~~~~~--------------------------------------- 51 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-VPAGI--PTDKQRLWLNNNQITKLEPG--------------------------------------- 51 (174)
T ss_dssp SSEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTT---------------------------------------
T ss_pred CcEEEeCCCCCCc-cCCCc--CCCCcEEEeCCCCccccCHH---------------------------------------
Confidence 3677777777754 33323 36788888888888877565
Q ss_pred cccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceecc
Q 006752 433 VGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 512 (632)
Q Consensus 433 l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 512 (632)
.|.++++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|++++|++..
T Consensus 52 ------------~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 52 ------------VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp ------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ------------HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 45677888889999888888666667888889999999998888777778888899999999988775
Q ss_pred C
Q 006752 513 S 513 (632)
Q Consensus 513 ~ 513 (632)
.
T Consensus 120 ~ 120 (174)
T 2r9u_A 120 E 120 (174)
T ss_dssp T
T ss_pred c
Confidence 3
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.21 E-value=2.7e-11 Score=125.11 Aligned_cols=152 Identities=15% Similarity=0.142 Sum_probs=87.4
Q ss_pred HHhccCC-CccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCC--CCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHh
Q 006752 84 AYLGAFR-YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALL 160 (632)
Q Consensus 84 ~~~~~~~-~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~--~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~ 160 (632)
.+|.+++ .|+++.+-.. ++.....+|.+|++|+.+.+..+ ..++..+..+|.+|.+|+.+.+..+ ++.....+|
T Consensus 57 ~aF~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred hhccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 3455563 4777777542 56666667777777777777654 1355555666777777777666543 343444566
Q ss_pred cCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCCCcEEEccCCCC----CCCCCCCCCCEE
Q 006752 161 SSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV----TKLPNISSLECL 236 (632)
Q Consensus 161 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~l~~l~~L~~L 236 (632)
..+.+|+.+.+..+ +......+|..+..|+.+.+..+ ++.....+|.. ..|+.+.+..+.. ..+..+..++..
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTI 210 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhcccccee
Confidence 77777777777543 23333456667777777777553 33344444533 4566666654321 123445555555
Q ss_pred ECCCC
Q 006752 237 NLSNC 241 (632)
Q Consensus 237 ~L~~~ 241 (632)
.....
T Consensus 211 ~~~~~ 215 (394)
T 4gt6_A 211 TSDSE 215 (394)
T ss_dssp EECCS
T ss_pred ccccc
Confidence 54443
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.05 E-value=7.3e-10 Score=113.79 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=46.7
Q ss_pred HhccCCCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCCCCccEEEccCCCCCHhHHHHhcCCC
Q 006752 85 YLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQ 164 (632)
Q Consensus 85 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 164 (632)
++....+|+.+.+.. . ++..+..+|.+|.+|+.+++..+ ++..+..+|.++ +|+.+.+..+ +......+|..+
T Consensus 41 ~~~~~~~i~~v~ip~-~-vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~- 113 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-G-ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT- 113 (379)
T ss_dssp TGGGGGGCSEEEECT-T-EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-
T ss_pred ccccccCCEEEEeCC-C-ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce-eeEeccceeccC-
Confidence 345556677777764 2 56666667777777777777643 455555666665 4666655432 333333344433
Q ss_pred CCCEEEcCC
Q 006752 165 NLSVLDLGG 173 (632)
Q Consensus 165 ~L~~L~L~~ 173 (632)
+|+.+.+..
T Consensus 114 ~L~~i~lp~ 122 (379)
T 4h09_A 114 DLDDFEFPG 122 (379)
T ss_dssp CCSEEECCT
T ss_pred CcccccCCC
Confidence 566665544
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=1.7e-10 Score=117.05 Aligned_cols=104 Identities=18% Similarity=0.230 Sum_probs=63.8
Q ss_pred EEEccCC-cCcchhHHHHHhcCCCCcEEEccC-CCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhh
Q 006752 330 NLNLSNT-RFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMI 407 (632)
Q Consensus 330 ~L~l~~n-~l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~ 407 (632)
.++.+++ +++.. |. + ..+++|++|+|++ |.+++..+..|..+++|+.|+|++|++++..|.
T Consensus 12 ~v~~~~~n~l~~i-p~-l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-------------- 74 (347)
T 2ifg_A 12 GLRCTRDGALDSL-HH-L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-------------- 74 (347)
T ss_dssp CEECCSSCCCTTT-TT-S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT--------------
T ss_pred EEEcCCCCCCCcc-CC-C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH--------------
Confidence 3566665 56543 22 2 5566667777764 666666666666666677777777766665444
Q ss_pred hhhceeccccccccccccccchhhhcccccccccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCC
Q 006752 408 VYNLFLHAYGYVIFPSSVLAGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 487 (632)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 487 (632)
.|.++++|++|+|++|+|++..+..|..++ |+.|+|++|.+.
T Consensus 75 -------------------------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 75 -------------------------------------AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -------------------------------------GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -------------------------------------HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 355666666777777766665444454444 666666666665
Q ss_pred C
Q 006752 488 D 488 (632)
Q Consensus 488 ~ 488 (632)
.
T Consensus 117 c 117 (347)
T 2ifg_A 117 C 117 (347)
T ss_dssp C
T ss_pred C
Confidence 4
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=8.4e-09 Score=104.06 Aligned_cols=200 Identities=16% Similarity=0.179 Sum_probs=122.5
Q ss_pred CCCCEEEcCCCCCCh-H-------HHHhccCCCCccEEEecCCCCC---------chhhHhhcCCCCCcEEEccCCCCCC
Q 006752 164 QNLSVLDLGGLPVTD-L-------VLRSLQVLTKLEYLDLWGSQVS---------NRGAAVLKMFPRLSFLNLAWTGVTK 226 (632)
Q Consensus 164 ~~L~~L~L~~n~i~~-~-------~~~~l~~l~~L~~L~L~~n~l~---------~~~~~~l~~l~~L~~L~l~~n~l~~ 226 (632)
..++.|.+......+ . +..+...+++|+.|.+...... +.....+..+|+|+.|.++++
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~---- 182 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT---- 182 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC----
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC----
Confidence 456777777554431 1 1223345678888877654321 112334445555555555443
Q ss_pred CCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhh-hhhhcCCCccEEeccCC--C------CCch-hh
Q 006752 227 LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA-FLYIETSLLSFLDVSNS--S------LSRF-CF 296 (632)
Q Consensus 227 l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~ls~n--~------l~~~-~~ 296 (632)
.-..++. + .+++|++|++..+.+...... .....+++|++|+|+.+ . +..+ ..
T Consensus 183 ---------------~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 183 ---------------NNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp ---------------BTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred ---------------CCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 1112222 1 256677777766665443221 12235677777776421 1 1111 12
Q ss_pred h--hcCCCCCeeeccCCCCCchHHHHHHh--cCCCCcEEEccCCcCcchhHHHHH---hcCCCCcEEEccCCCCChHHHH
Q 006752 297 L--TQMKALEHLDLSSSMIGDDSVEMVAC--VGANLRNLNLSNTRFSSAGVGILA---GHLPNLEILSLSGTQIDDYAIS 369 (632)
Q Consensus 297 l--~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~ 369 (632)
+ ..+++|++|++.+|.+.+..+..+.. .+++|++|+++.|.+.+.....+. ..+++|+.|++++|.+++....
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 2 34789999999999998777666664 237899999999999987766654 3478999999999999988887
Q ss_pred HHhc-CCCccEEEccCCc
Q 006752 370 YMSM-MPSLKFIDISNTD 386 (632)
Q Consensus 370 ~l~~-~~~L~~L~Ls~n~ 386 (632)
.+.. + ...++++.++
T Consensus 326 ~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHC--CSEEECCSBC
T ss_pred HHHHHc--CCEEEecCCc
Confidence 7775 4 4668888876
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.97 E-value=2.6e-09 Score=109.68 Aligned_cols=303 Identities=13% Similarity=0.157 Sum_probs=146.6
Q ss_pred hhhcCCCCccEEEccCCCCCHhHHHHhcCCCCCCEEEcCCCCCChHHHHhccCCCCccEEEecCCCCCchhhHhhcCCCC
Q 006752 134 KHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPR 213 (632)
Q Consensus 134 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 213 (632)
+++....+|+.+.+.. .++.+...+|.+|.+|+.+.+..+ ++.....+|.++ +|+.+.+..+ ++.....+|..+ +
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D 114 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence 3445566777777764 344445567777778887777543 444444566665 5666665432 333333444432 4
Q ss_pred CcEEEccCCCCCCCCCCCCCCEEECCCCcccchhccccCCCCCcEEEeeCCCCCchhhhhhhhcCCCccEEeccCCCCCc
Q 006752 214 LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR 293 (632)
Q Consensus 214 L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 293 (632)
|+.+.+..+ +..+....+...+++.+.+..+ +..+.. ..+..+..++.+.+.......
T Consensus 115 L~~i~lp~~--------------------~~~i~~~~F~~~~l~~~~~~~~-v~~i~~-~~f~~~~~l~~~~~~~~~~~~ 172 (379)
T 4h09_A 115 LDDFEFPGA--------------------TTEIGNYIFYNSSVKRIVIPKS-VTTIKD-GIGYKAENLEKIEVSSNNKNY 172 (379)
T ss_dssp CSEEECCTT--------------------CCEECTTTTTTCCCCEEEECTT-CCEECS-CTTTTCTTCCEEEECTTCSSE
T ss_pred cccccCCCc--------------------cccccccccccceeeeeeccce-eecccc-chhccccccccccccccccee
Confidence 555555432 1122222222223333333221 111111 122334444444433322211
Q ss_pred h--------------hhhhcCCCCCeeeccCCCCCchHHHHHHhcCCCCcEEEccCCcCcchhHHHHHhcCCCCcEEEcc
Q 006752 294 F--------------CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 359 (632)
Q Consensus 294 ~--------------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 359 (632)
. ..+..+..+..+.+.... .......+... ..++.+.+..+ +.......+ ..|..|+.+.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~-~~l~~i~~~~~-~~~i~~~~f-~~~~~L~~i~lp 248 (379)
T 4h09_A 173 VAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYG-KNLKKITITSG-VTTLGDGAF-YGMKALDEIAIP 248 (379)
T ss_dssp EEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTC-SSCSEEECCTT-CCEECTTTT-TTCSSCCEEEEC
T ss_pred ecccceecccccceeccccccccccccccccce-eEEeecccccc-cccceeeeccc-eeEEccccc-cCCccceEEEcC
Confidence 1 122223333333333221 11111112222 45555555433 222222222 345666666665
Q ss_pred CCCCChHHHHHHhcCCCccEEEccCCccccccCCCccchhhhhhhhhhhhhceeccccccccccccccchhhhccccccc
Q 006752 360 GTQIDDYAISYMSMMPSLKFIDISNTDIKGMYPSGQMNVFFSAYCFMIVYNLFLHAYGYVIFPSSVLAGFIQQVGAETDL 439 (632)
Q Consensus 360 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 439 (632)
.+ ++.....+|.++.+|+.+.+..+ +... +.
T Consensus 249 ~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i-~~---------------------------------------------- 279 (379)
T 4h09_A 249 KN-VTSIGSFLLQNCTALKTLNFYAK-VKTV-PY---------------------------------------------- 279 (379)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEECCC-CSEE-CT----------------------------------------------
T ss_pred CC-ccEeCccccceeehhcccccccc-ceec-cc----------------------------------------------
Confidence 44 44344445556666666665432 2221 11
Q ss_pred ccchHHhhcCCcccccccCccCCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceeccCCCCCCC
Q 006752 440 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK 519 (632)
Q Consensus 440 l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~ 519 (632)
.+|.+|.+|+.+.+.++.++.+...+|.++++|+.+.|..+ ++.+...+|.+|++|+.+.+..+ ++.+...+|.
T Consensus 280 ----~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~ 353 (379)
T 4h09_A 280 ----LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFE 353 (379)
T ss_dssp ----TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred ----cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence 24666677777777766666666666777777777777543 55555566777777777777544 5555556666
Q ss_pred CCC
Q 006752 520 PPR 522 (632)
Q Consensus 520 ~~~ 522 (632)
++.
T Consensus 354 ~c~ 356 (379)
T 4h09_A 354 GSS 356 (379)
T ss_dssp TSS
T ss_pred CCC
Confidence 553
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=4.6e-09 Score=105.96 Aligned_cols=201 Identities=16% Similarity=0.173 Sum_probs=113.6
Q ss_pred CCCccEEEccCCCCCH-----hH---HHHhcCCCCCCEEEcCCCCCC---------hHHHHhccCCCCccEEEecCCCCC
Q 006752 139 ISTLEKLWLSETGLTA-----DG---IALLSSLQNLSVLDLGGLPVT---------DLVLRSLQVLTKLEYLDLWGSQVS 201 (632)
Q Consensus 139 l~~L~~L~L~~n~i~~-----~~---~~~~~~l~~L~~L~L~~n~i~---------~~~~~~l~~l~~L~~L~L~~n~l~ 201 (632)
.+.++.|.+......+ .. ..+...+++|+.|.+...... +.+...+..+|+|+.|+++++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3456777777555431 11 223446789999999765321 124455678899999999987311
Q ss_pred chhhHhhcCCCCCcEEEccCCCCCCCCCCCCCCEEECCCCcccchhcccc--CCCCCcEEEeeCC--C------CCchhh
Q 006752 202 NRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNE--NKAPLAKISLAGT--T------FINERE 271 (632)
Q Consensus 202 ~~~~~~l~~l~~L~~L~l~~n~l~~l~~l~~L~~L~L~~~~l~~~~~~~~--~~~~L~~L~l~~n--~------~~~~~~ 271 (632)
. .+. + .+++|++|++..+.++. .....+. .+++|+.|+|+.+ . +..+..
T Consensus 186 ~-l~~-~-~~~~L~~L~L~~~~l~~------------------~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 186 S-IGK-K-PRPNLKSLEIISGGLPD------------------SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp B-CCS-C-BCTTCSEEEEECSBCCH------------------HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred e-ecc-c-cCCCCcEEEEecCCCCh------------------HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 1 111 2 24555555555544432 1111111 3444555544311 0 001111
Q ss_pred hhhhhcCCCccEEeccCCCCCch--hhh---hcCCCCCeeeccCCCCCchHHHHHHh---cCCCCcEEEccCCcCcchhH
Q 006752 272 AFLYIETSLLSFLDVSNSSLSRF--CFL---TQMKALEHLDLSSSMIGDDSVEMVAC---VGANLRNLNLSNTRFSSAGV 343 (632)
Q Consensus 272 ~~~~~~~~~L~~L~ls~n~l~~~--~~l---~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~ 343 (632)
......+++|++|++.+|.+... ..+ ..+++|++|+++.|.+++.++..+.. .+++|+.|++++|.+++...
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 11112356666666666666532 111 24678888888888888776555542 13789999999888888777
Q ss_pred HHHHhcCCCCcEEEccCCC
Q 006752 344 GILAGHLPNLEILSLSGTQ 362 (632)
Q Consensus 344 ~~~~~~~~~L~~L~L~~n~ 362 (632)
..+...+ ...+++++++
T Consensus 325 ~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC--CSEEECCSBC
T ss_pred HHHHHHc--CCEEEecCCc
Confidence 7765434 4668888876
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.96 E-value=5.6e-10 Score=98.80 Aligned_cols=84 Identities=20% Similarity=0.407 Sum_probs=42.1
Q ss_pred cccEEeccCCCCCCHHHHHHhccCCCccEEEcCCCCCCCchhHHhhhCC----CCcCEEeccCCCCCChhhHhhhcCCCC
Q 006752 66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGM----TCLKELDLSRCVKVTDAGMKHLLSIST 141 (632)
Q Consensus 66 ~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l----~~L~~L~L~~~~~l~~~~~~~l~~l~~ 141 (632)
.|++||+++|. +++.....+..|++|++|+|++|..+++.....++.+ ++|++|+|++|..+++.+...+..+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 35555555553 4443334444555555555555544555555555442 345555555554455555555555555
Q ss_pred ccEEEccCC
Q 006752 142 LEKLWLSET 150 (632)
Q Consensus 142 L~~L~L~~n 150 (632)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.85 E-value=1.6e-08 Score=92.00 Aligned_cols=119 Identities=20% Similarity=0.151 Sum_probs=76.4
Q ss_pred HHHHHhccCCCccEEEcCCC-CCCCchhHHh----hhCCCCcCEEeccCCCCCChhhHhhhc----CCCCccEEEccCCC
Q 006752 81 EWMAYLGAFRYLRSLNVADC-RRVTSSALWA----LTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETG 151 (632)
Q Consensus 81 ~~~~~~~~~~~L~~L~L~~~-~~i~~~~~~~----l~~l~~L~~L~L~~~~~l~~~~~~~l~----~l~~L~~L~L~~n~ 151 (632)
.+...+...+.|++|+|++| . +++..... +...++|++|+|++| .+++.+...++ ..+.|++|+|++|.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHhcCCCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 44556667777777777777 5 66654443 335677777777777 56666554443 34677777777777
Q ss_pred CCHhHH----HHhcCCCCCCEEEc--CCCCCChHHHH----hccCCCCccEEEecCCCCC
Q 006752 152 LTADGI----ALLSSLQNLSVLDL--GGLPVTDLVLR----SLQVLTKLEYLDLWGSQVS 201 (632)
Q Consensus 152 i~~~~~----~~~~~l~~L~~L~L--~~n~i~~~~~~----~l~~l~~L~~L~L~~n~l~ 201 (632)
++.... ..+...++|++|++ ++|.+.+.... .+...++|++|++++|.+.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 776543 34555667777777 66777665433 3344567777777777664
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.80 E-value=6.5e-09 Score=91.96 Aligned_cols=88 Identities=20% Similarity=0.413 Sum_probs=74.5
Q ss_pred CCccEEEcCCCCCCCchhHHhhhCCCCcCEEeccCCCCCChhhHhhhcCC----CCccEEEccCC-CCCHhHHHHhcCCC
Q 006752 90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI----STLEKLWLSET-GLTADGIALLSSLQ 164 (632)
Q Consensus 90 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~l~~l----~~L~~L~L~~n-~i~~~~~~~~~~l~ 164 (632)
.+|++|++++|. +++.....+.+|++|++|+|++|..+++.+...++.+ ++|++|+|++| ++++.....+..++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 469999999998 9998888899999999999999988999998888875 47889999888 58887777788888
Q ss_pred CCCEEEcCCCC-CCh
Q 006752 165 NLSVLDLGGLP-VTD 178 (632)
Q Consensus 165 ~L~~L~L~~n~-i~~ 178 (632)
+|++|++++|. +++
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 88888888876 554
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.80 E-value=2.6e-08 Score=90.54 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=82.9
Q ss_pred hcCCCccEEeccCC-CCCch------hhhhcCCCCCeeeccCCCCCchHHHHHHhc---CCCCcEEEccCCcCcchhHHH
Q 006752 276 IETSLLSFLDVSNS-SLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACV---GANLRNLNLSNTRFSSAGVGI 345 (632)
Q Consensus 276 ~~~~~L~~L~ls~n-~l~~~------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~ 345 (632)
...+.|++|++++| .+... ..+...++|++|++++|.+.+.+...+... .++|++|++++|.+.+.....
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 35566777777776 66543 455667888999999998887665544332 278999999999998876655
Q ss_pred HH---hcCCCCcEEEc--cCCCCChHHHHH----HhcCCCccEEEccCCcccc
Q 006752 346 LA---GHLPNLEILSL--SGTQIDDYAISY----MSMMPSLKFIDISNTDIKG 389 (632)
Q Consensus 346 ~~---~~~~~L~~L~L--~~n~l~~~~~~~----l~~~~~L~~L~Ls~n~i~~ 389 (632)
++ ...++|++|++ ++|.+++..... +...++|++|++++|.+..
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 54 34568999999 889998765444 4466899999999998754
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=6.4e-07 Score=85.51 Aligned_cols=58 Identities=28% Similarity=0.278 Sum_probs=37.5
Q ss_pred HhhcCCcccccccCccCCCCCccccccCcc--cccccccccccCCCcch-------hhhccCCCCcEEe
Q 006752 445 ALQNLNHLERLNLEQTQVSDATLFPLSTFK--ELIHLSLRNASLTDVSL-------HQLSSLSKLTNLS 504 (632)
Q Consensus 445 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L~ 504 (632)
.+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+..| ..+..+++|+.||
T Consensus 191 ~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 191 IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 455677777777777777764 2333333 77777777777765433 2456677777765
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=3.1e-07 Score=87.68 Aligned_cols=108 Identities=19% Similarity=0.185 Sum_probs=69.3
Q ss_pred HhhcCCcccc--cccCccCCCC---CccccccCcccccccccccccCCCc--chhhhccCCCCcEEeecCceeccC-CCC
Q 006752 445 ALQNLNHLER--LNLEQTQVSD---ATLFPLSTFKELIHLSLRNASLTDV--SLHQLSSLSKLTNLSIRDAVLTNS-GLG 516 (632)
Q Consensus 445 ~l~~l~~L~~--L~Ls~n~l~~---~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~ls~N~l~~~-~~~ 516 (632)
.+...+.|+. ++++.|.... .......++++|+.|+|++|+|+++ +|..+..+++|+.|+|++|+|++. ...
T Consensus 136 ~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~ 215 (267)
T 3rw6_A 136 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD 215 (267)
T ss_dssp TGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG
T ss_pred HcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh
Confidence 3555556665 6667764322 1111123577888888888888873 346677888888888888888875 122
Q ss_pred CCCCCCCcceEecCCCcccCh------HHHHHHHHHcCCeeeee
Q 006752 517 SFKPPRSLKLLDLHGGWLLTE------DAILQFCKMHPRIEVWH 554 (632)
Q Consensus 517 ~l~~~~~L~~L~l~~N~l~~~------~~~~~~~~~~~~~~~~~ 554 (632)
.+..+ .|++|++++|++ ++ .........+|.+...+
T Consensus 216 ~l~~l-~L~~L~L~~Npl-~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGL-KLEELWLDGNSL-CDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTS-CCSEEECTTSTT-GGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hcccC-CcceEEccCCcC-ccccCcchhHHHHHHHHCcccCeEC
Confidence 33333 888999999987 43 23345566777765443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.14 E-value=1.1e-05 Score=72.68 Aligned_cols=112 Identities=15% Similarity=0.176 Sum_probs=79.6
Q ss_pred cCCCccEEeccCC-CCCch------hhhhcCCCCCeeeccCCCCCchHHHHHHhc---CCCCcEEEccCCcCcchhHHHH
Q 006752 277 ETSLLSFLDVSNS-SLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACV---GANLRNLNLSNTRFSSAGVGIL 346 (632)
Q Consensus 277 ~~~~L~~L~ls~n-~l~~~------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~ 346 (632)
.-+.|+.|+++++ .+... .++...+.|+.|+|++|.+.+.+...++.. .+.|++|+|+.|.|.+.+...+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4566777777764 55432 456667888999999998887765555432 2789999999999988877776
Q ss_pred HhcC---CCCcEEEccCC---CCChHH----HHHHhcCCCccEEEccCCccc
Q 006752 347 AGHL---PNLEILSLSGT---QIDDYA----ISYMSMMPSLKFIDISNTDIK 388 (632)
Q Consensus 347 ~~~~---~~L~~L~L~~n---~l~~~~----~~~l~~~~~L~~L~Ls~n~i~ 388 (632)
+..+ +.|++|+|++| .+.+.. ...+..-+.|+.|+++.|.+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 6554 47999999864 566543 444556788999999877653
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.03 E-value=4.8e-05 Score=68.51 Aligned_cols=116 Identities=12% Similarity=0.148 Sum_probs=56.1
Q ss_pred HHHhccCCCccEEEcCCCCCCCchhHHh----hhCCCCcCEEeccCCCCCChhhHhhhc----CCCCccEEEccCCCCCH
Q 006752 83 MAYLGAFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETGLTA 154 (632)
Q Consensus 83 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~----l~~l~~L~~L~L~~~~~l~~~~~~~l~----~l~~L~~L~L~~n~i~~ 154 (632)
...+..-+.|++|+|+++..+.+....+ +..-+.|++|+|++| .+++.+...++ .-+.|++|+|++|.|..
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3334444555555555542254443332 223455566666655 45555544443 23556666666666555
Q ss_pred hHHH----HhcCCCCCCEEEcCCC---CCChH----HHHhccCCCCccEEEecCCC
Q 006752 155 DGIA----LLSSLQNLSVLDLGGL---PVTDL----VLRSLQVLTKLEYLDLWGSQ 199 (632)
Q Consensus 155 ~~~~----~~~~l~~L~~L~L~~n---~i~~~----~~~~l~~l~~L~~L~L~~n~ 199 (632)
.+.. .+..-+.|++|+|+++ .+... +...+..-+.|+.|+++.+.
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4432 3334445666666543 33332 22233444556666665543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.64 E-value=3.9e-05 Score=64.66 Aligned_cols=69 Identities=13% Similarity=0.041 Sum_probs=53.7
Q ss_pred ccccccccCC-CcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCCCcccChHHHHHHHHHcC
Q 006752 478 HLSLRNASLT-DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 548 (632)
Q Consensus 478 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~ 548 (632)
.++.+++.++ ..+|..+ -++|+.|+|++|+|+.+.+..|..+++|+.|+|++|++.|+|.+.++..+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~ 81 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLA 81 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHH
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHH
Confidence 5666677666 1244332 2468889999999988888888888999999999999999999888887764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.51 E-value=0.0021 Score=53.84 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=46.1
Q ss_pred cccccCccCCC-CCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecCceec
Q 006752 453 ERLNLEQTQVS-DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 511 (632)
Q Consensus 453 ~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~N~l~ 511 (632)
..++-+++.++ ..+|..+ .++|++|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888887 2356543 357999999999999988888999999999999999764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.28 E-value=4.7 Score=31.35 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=25.9
Q ss_pred CCCCCccccccCcccccccccccccCCCcchhhhccCCCCcEEeecC
Q 006752 461 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 507 (632)
Q Consensus 461 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~ 507 (632)
.++.+...+|.+|++|+.+.+-.+ ++.+...+|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 444545555666666666666543 3344445566666666666655
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.19 E-value=8.8 Score=29.73 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=26.7
Q ss_pred cCCCcchhhhccCCCCcEEeecCceeccCCCCCCCCCCCcceEecCC
Q 006752 485 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 531 (632)
Q Consensus 485 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~~~~L~~L~l~~ 531 (632)
.++.+...+|.+|.+|+.+.|-.+ ++.+...+|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444556666666666666553 4455556666666666666654
No 167
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=28.82 E-value=45 Score=18.22 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=13.4
Q ss_pred chhhhhHHHHHHHHHHH
Q 006752 2 ERERESELVRLCIEAAC 18 (632)
Q Consensus 2 ~~~~~~~l~~lc~~~~~ 18 (632)
.++|++.|.|.|++...
T Consensus 10 dekqieelldncietfv 26 (31)
T 4h62_V 10 DEKQIEELLDNCIETFV 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 46788999999998653
Done!