Query 006754
Match_columns 632
No_of_seqs 429 out of 2052
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:04:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmu_A Homeobox protein goosec 99.7 1.1E-18 3.7E-23 144.0 6.3 65 495-559 3-67 (70)
2 2dmq_A LIM/homeobox protein LH 99.7 1.7E-18 5.8E-23 146.3 7.6 66 495-560 3-68 (80)
3 2dms_A Homeobox protein OTX2; 99.7 1.7E-18 5.9E-23 146.5 7.4 65 495-559 3-67 (80)
4 2cue_A Paired box protein PAX6 99.7 1.7E-18 5.8E-23 146.7 7.2 68 495-562 3-70 (80)
5 2cra_A Homeobox protein HOX-B1 99.7 8.3E-19 2.8E-23 144.9 4.3 65 494-558 2-66 (70)
6 2da2_A Alpha-fetoprotein enhan 99.7 1E-18 3.5E-23 144.0 4.7 65 494-558 2-66 (70)
7 2e1o_A Homeobox protein PRH; D 99.7 2E-18 6.7E-23 142.6 6.2 64 495-558 3-66 (70)
8 2da1_A Alpha-fetoprotein enhan 99.7 1.3E-18 4.4E-23 143.5 4.5 64 495-558 3-66 (70)
9 1nk2_P Homeobox protein VND; h 99.7 5.6E-18 1.9E-22 142.5 7.5 66 495-560 5-70 (77)
10 2djn_A Homeobox protein DLX-5; 99.7 1.3E-18 4.3E-23 143.8 3.3 64 494-557 2-65 (70)
11 2dmt_A Homeobox protein BARH-l 99.7 2.5E-18 8.4E-23 145.7 5.1 63 496-558 14-76 (80)
12 2h1k_A IPF-1, pancreatic and d 99.7 6.3E-18 2.2E-22 136.9 5.6 59 499-557 3-61 (63)
13 2da3_A Alpha-fetoprotein enhan 99.7 3.6E-18 1.2E-22 143.9 4.4 62 496-557 14-75 (80)
14 1wh5_A ZF-HD homeobox family p 99.7 3.8E-18 1.3E-22 145.2 4.5 59 496-554 14-76 (80)
15 2kt0_A Nanog, homeobox protein 99.7 4.8E-18 1.6E-22 144.7 4.9 64 495-558 18-81 (84)
16 1ig7_A Homeotic protein MSX-1; 99.7 7.8E-18 2.7E-22 133.8 5.8 57 500-556 1-57 (58)
17 2hdd_A Protein (engrailed home 99.7 5.3E-18 1.8E-22 136.3 4.8 58 499-556 3-60 (61)
18 1jgg_A Segmentation protein EV 99.7 7.6E-18 2.6E-22 135.0 5.4 58 500-557 2-59 (60)
19 1ahd_P Antennapedia protein mu 99.7 7.4E-18 2.5E-22 138.7 4.9 61 499-559 2-62 (68)
20 1ftt_A TTF-1 HD, thyroid trans 99.7 1.1E-17 3.9E-22 137.5 5.8 61 499-559 2-62 (68)
21 3a01_A Homeodomain-containing 99.7 1.2E-17 4.1E-22 145.7 6.2 68 495-562 13-80 (93)
22 1fjl_A Paired protein; DNA-bin 99.7 1.3E-17 4.3E-22 141.5 6.2 64 496-559 15-78 (81)
23 2dmn_A Homeobox protein TGIF2L 99.7 1.9E-17 6.5E-22 141.6 7.1 65 494-558 2-69 (83)
24 1zq3_P PRD-4, homeotic bicoid 99.7 1.4E-17 4.7E-22 137.0 6.0 62 499-560 2-63 (68)
25 1puf_A HOX-1.7, homeobox prote 99.7 1.9E-17 6.5E-22 139.3 6.9 63 497-559 11-73 (77)
26 1yz8_P Pituitary homeobox 2; D 99.7 5.9E-18 2E-22 139.0 3.6 62 498-559 2-63 (68)
27 2vi6_A Homeobox protein nanog; 99.7 6.3E-18 2.2E-22 136.3 3.7 59 498-556 2-60 (62)
28 1x2n_A Homeobox protein pknox1 99.7 2.2E-17 7.5E-22 137.3 6.6 64 495-558 3-69 (73)
29 1bw5_A ISL-1HD, insulin gene e 99.7 7.9E-18 2.7E-22 137.4 3.7 58 498-555 2-59 (66)
30 2l7z_A Homeobox protein HOX-A1 99.7 1.6E-17 5.4E-22 138.5 5.4 61 497-557 5-65 (73)
31 1wh7_A ZF-HD homeobox family p 99.7 8.9E-18 3.1E-22 143.1 3.9 58 496-554 14-76 (80)
32 1akh_A Protein (mating-type pr 99.7 9.7E-18 3.3E-22 134.5 3.8 57 497-553 3-59 (61)
33 2cuf_A FLJ21616 protein; homeo 99.7 3E-17 1E-21 143.4 6.8 67 494-560 2-83 (95)
34 1b8i_A Ultrabithorax, protein 99.7 1.5E-17 5.1E-22 141.4 4.7 62 497-558 18-79 (81)
35 2da5_A Zinc fingers and homeob 99.7 3.3E-17 1.1E-21 137.4 6.4 58 501-558 9-66 (75)
36 2da4_A Hypothetical protein DK 99.7 1.7E-17 5.9E-22 140.3 4.2 61 497-557 6-70 (80)
37 3a02_A Homeobox protein arista 99.7 2.1E-17 7.2E-22 132.4 4.3 57 502-558 2-58 (60)
38 2ecb_A Zinc fingers and homeob 99.7 3.9E-17 1.3E-21 142.0 6.0 54 505-558 17-70 (89)
39 3rkq_A Homeobox protein NKX-2. 99.7 3E-17 1E-21 129.8 4.8 55 499-553 2-56 (58)
40 2ecc_A Homeobox and leucine zi 99.7 4E-17 1.4E-21 138.0 5.6 55 503-557 7-61 (76)
41 2m0c_A Homeobox protein arista 99.7 5.8E-17 2E-21 134.8 6.3 63 496-558 6-68 (75)
42 2r5y_A Homeotic protein sex co 99.7 2.9E-17 9.8E-22 141.5 4.3 61 497-557 26-86 (88)
43 2k40_A Homeobox expressed in E 99.7 3.2E-17 1.1E-21 134.1 4.3 58 500-557 2-59 (67)
44 2hi3_A Homeodomain-only protei 99.7 6.2E-17 2.1E-21 134.8 6.0 59 500-558 3-62 (73)
45 3a03_A T-cell leukemia homeobo 99.7 4.8E-17 1.6E-21 128.9 5.1 54 504-557 2-55 (56)
46 1uhs_A HOP, homeodomain only p 99.7 6.9E-17 2.4E-21 134.0 5.6 58 501-558 3-61 (72)
47 1wi3_A DNA-binding protein SAT 99.7 6.9E-17 2.4E-21 133.3 5.4 59 494-552 2-61 (71)
48 1puf_B PRE-B-cell leukemia tra 99.7 6.6E-17 2.3E-21 134.4 5.2 60 500-559 2-64 (73)
49 1b72_B Protein (PBX1); homeodo 99.6 6.7E-17 2.3E-21 138.5 4.9 62 500-561 2-66 (87)
50 2dn0_A Zinc fingers and homeob 99.6 9.6E-17 3.3E-21 134.6 5.7 57 500-556 9-65 (76)
51 1b72_A Protein (homeobox prote 99.6 8.1E-17 2.8E-21 141.1 5.2 63 497-559 32-94 (97)
52 1du6_A PBX1, homeobox protein 99.6 4.2E-17 1.4E-21 132.1 2.9 57 499-555 3-62 (64)
53 1le8_B Mating-type protein alp 99.6 1E-16 3.6E-21 136.8 5.1 58 501-558 4-64 (83)
54 1k61_A Mating-type protein alp 99.6 1.5E-16 5.1E-21 127.3 4.8 53 503-555 2-57 (60)
55 2ly9_A Zinc fingers and homeob 99.6 3.8E-16 1.3E-20 130.0 6.8 60 498-557 5-64 (74)
56 3nar_A ZHX1, zinc fingers and 99.6 2.7E-16 9.1E-21 137.7 4.7 61 497-557 23-83 (96)
57 2da6_A Hepatocyte nuclear fact 99.6 7.7E-16 2.6E-20 136.8 7.6 66 495-560 2-88 (102)
58 2dmp_A Zinc fingers and homeob 99.6 8.5E-16 2.9E-20 133.0 6.8 56 503-558 17-72 (89)
59 1mnm_C Protein (MAT alpha-2 tr 99.6 5.1E-16 1.7E-20 133.4 5.3 58 497-554 25-85 (87)
60 3nau_A Zinc fingers and homeob 99.6 6.4E-16 2.2E-20 127.1 4.4 49 507-555 12-60 (66)
61 2cqx_A LAG1 longevity assuranc 99.6 2.9E-16 9.9E-21 131.1 1.7 55 501-555 10-65 (72)
62 3d1n_I POU domain, class 6, tr 99.6 1.3E-15 4.3E-20 143.6 5.2 61 496-556 90-150 (151)
63 1au7_A Protein PIT-1, GHF-1; c 99.6 8.5E-16 2.9E-20 144.3 4.0 61 496-556 84-144 (146)
64 2xsd_C POU domain, class 3, tr 99.6 7.7E-16 2.6E-20 147.4 3.4 63 496-558 96-158 (164)
65 1e3o_C Octamer-binding transcr 99.5 1.5E-15 5.2E-20 144.5 4.1 60 497-556 99-158 (160)
66 2l9r_A Homeobox protein NKX-3. 99.5 2.3E-15 7.8E-20 125.0 4.6 53 504-556 9-61 (69)
67 3k2a_A Homeobox protein MEIS2; 99.5 2E-15 7E-20 124.1 3.9 55 505-559 4-61 (67)
68 1lfb_A Liver transcription fac 99.5 1.1E-15 3.6E-20 135.3 2.3 58 496-553 6-84 (99)
69 2e19_A Transcription factor 8; 99.5 2.7E-15 9.2E-20 122.6 4.3 49 504-552 8-56 (64)
70 2d5v_A Hepatocyte nuclear fact 99.5 2.2E-15 7.5E-20 143.4 3.0 63 496-558 94-156 (164)
71 1x2m_A LAG1 longevity assuranc 99.5 1.9E-15 6.4E-20 123.9 1.4 46 507-552 8-54 (64)
72 3l1p_A POU domain, class 5, tr 99.5 6.6E-15 2.3E-19 139.5 3.5 60 497-556 94-153 (155)
73 2lk2_A Homeobox protein TGIF1; 99.4 2.6E-13 8.8E-18 117.9 6.3 56 504-559 10-68 (89)
74 1fp0_A KAP-1 corepressor; PHD 99.4 2.7E-13 9.2E-18 117.5 5.0 59 230-298 17-75 (88)
75 1ic8_A Hepatocyte nuclear fact 99.4 1E-13 3.6E-18 136.0 2.2 59 495-553 111-190 (194)
76 1wev_A Riken cDNA 1110020M19; 99.4 1.2E-13 4.1E-18 119.6 2.1 62 235-299 13-76 (88)
77 2h8r_A Hepatocyte nuclear fact 99.3 3.8E-13 1.3E-17 134.0 4.5 60 493-552 136-216 (221)
78 1mm2_A MI2-beta; PHD, zinc fin 99.3 1E-12 3.4E-17 106.4 4.3 52 235-296 6-57 (61)
79 2yt5_A Metal-response element- 99.3 4E-13 1.4E-17 109.6 0.5 59 235-296 3-62 (66)
80 2l5u_A Chromodomain-helicase-D 99.3 1.8E-12 6.2E-17 104.9 4.3 52 233-294 6-57 (61)
81 1xwh_A Autoimmune regulator; P 99.3 1.1E-12 3.9E-17 107.6 2.8 52 235-296 5-56 (66)
82 2da7_A Zinc finger homeobox pr 99.3 2.4E-12 8.1E-17 106.9 3.7 45 508-552 14-58 (71)
83 2puy_A PHD finger protein 21A; 99.2 1.9E-12 6.4E-17 104.2 2.8 50 237-296 4-53 (60)
84 2lri_C Autoimmune regulator; Z 99.2 2.9E-12 1E-16 105.5 3.9 51 235-295 9-59 (66)
85 1f62_A Transcription factor WS 99.2 3E-12 1E-16 99.5 3.5 48 240-294 2-49 (51)
86 2yql_A PHD finger protein 21A; 99.2 2.6E-12 8.9E-17 102.1 2.9 50 235-294 6-55 (56)
87 2e6r_A Jumonji/ARID domain-con 99.2 2.3E-12 7.9E-17 112.4 2.4 57 233-296 11-67 (92)
88 2ku3_A Bromodomain-containing 99.2 3.4E-12 1.2E-16 106.5 2.3 55 235-296 13-67 (71)
89 2e6s_A E3 ubiquitin-protein li 99.2 1.4E-11 4.7E-16 104.4 5.8 54 233-294 22-76 (77)
90 3asl_A E3 ubiquitin-protein li 99.2 1.5E-11 5.1E-16 102.2 4.8 54 233-294 14-68 (70)
91 2l43_A N-teminal domain from h 99.2 5.2E-12 1.8E-16 109.4 1.7 55 235-296 22-76 (88)
92 3o36_A Transcription intermedi 99.1 2.4E-11 8.2E-16 117.5 4.5 49 237-295 3-51 (184)
93 3u5n_A E3 ubiquitin-protein li 99.1 2E-11 6.7E-16 120.4 4.0 52 235-296 4-55 (207)
94 2kwj_A Zinc finger protein DPF 99.1 1.6E-11 5.6E-16 110.7 3.0 77 213-296 28-109 (114)
95 1mh3_A Maltose binding-A1 home 99.1 1.6E-11 5.4E-16 129.1 2.9 54 500-553 366-419 (421)
96 3ask_A E3 ubiquitin-protein li 99.0 8.1E-11 2.8E-15 117.7 4.7 53 234-294 171-224 (226)
97 3v43_A Histone acetyltransfera 99.0 5.5E-11 1.9E-15 106.8 3.1 76 214-295 32-112 (112)
98 3shb_A E3 ubiquitin-protein li 99.0 1.2E-10 4E-15 98.7 4.8 55 233-294 22-76 (77)
99 2ro1_A Transcription intermedi 99.0 9.1E-11 3.1E-15 114.5 3.6 48 238-295 2-49 (189)
100 2k16_A Transcription initiatio 99.0 1.9E-10 6.5E-15 96.1 3.6 55 235-296 15-69 (75)
101 2ysm_A Myeloid/lymphoid or mix 99.0 2.5E-10 8.4E-15 102.0 4.5 76 213-295 27-104 (111)
102 2lv9_A Histone-lysine N-methyl 98.9 1.8E-09 6.1E-14 95.1 5.4 56 231-295 21-76 (98)
103 4gne_A Histone-lysine N-methyl 98.7 5.9E-09 2E-13 93.4 3.8 49 235-295 12-62 (107)
104 2lbm_A Transcriptional regulat 98.6 7.8E-09 2.7E-13 96.9 1.1 53 236-296 61-118 (142)
105 1weu_A Inhibitor of growth fam 98.6 5E-08 1.7E-12 85.1 5.9 51 235-296 33-86 (91)
106 2ysm_A Myeloid/lymphoid or mix 98.5 5.7E-08 1.9E-12 86.7 5.2 55 234-295 3-57 (111)
107 1wen_A Inhibitor of growth fam 98.5 6.1E-08 2.1E-12 80.8 4.8 51 235-296 13-66 (71)
108 2vnf_A ING 4, P29ING4, inhibit 98.5 1.9E-08 6.5E-13 81.1 1.6 49 236-295 8-59 (60)
109 2jmi_A Protein YNG1, ING1 homo 98.5 6.3E-08 2.2E-12 84.3 3.3 48 235-293 23-74 (90)
110 3c6w_A P28ING5, inhibitor of g 98.4 4.3E-08 1.5E-12 78.8 1.5 49 236-295 7-58 (59)
111 2g6q_A Inhibitor of growth pro 98.4 7.1E-08 2.4E-12 78.4 1.4 49 236-295 9-60 (62)
112 3ql9_A Transcriptional regulat 98.3 7.1E-08 2.4E-12 89.1 -0.9 55 235-297 54-113 (129)
113 1we9_A PHD finger family prote 98.2 4.5E-07 1.6E-11 73.3 2.1 55 236-296 4-59 (64)
114 1x4i_A Inhibitor of growth pro 98.2 3.9E-07 1.3E-11 75.7 1.6 51 236-297 4-57 (70)
115 2nzz_A Penetratin conjugated G 98.1 5E-07 1.7E-11 66.3 0.2 20 541-560 1-20 (37)
116 2rsd_A E3 SUMO-protein ligase 98.1 2.1E-06 7.2E-11 70.5 3.8 56 235-296 7-66 (68)
117 1wee_A PHD finger family prote 98.0 2.4E-06 8.2E-11 70.9 3.1 52 236-295 14-66 (72)
118 3o70_A PHD finger protein 13; 98.0 2.7E-06 9.3E-11 70.2 3.3 51 235-294 16-66 (68)
119 2ri7_A Nucleosome-remodeling f 97.9 7E-07 2.4E-11 85.2 -1.5 55 236-296 6-60 (174)
120 1wew_A DNA-binding family prot 97.9 3.3E-06 1.1E-10 71.2 2.4 57 236-296 14-73 (78)
121 2kwj_A Zinc finger protein DPF 97.9 2.2E-06 7.6E-11 77.1 0.3 55 239-296 2-62 (114)
122 1wem_A Death associated transc 97.8 2E-06 6.9E-11 71.9 -0.8 53 238-296 16-71 (76)
123 1wep_A PHF8; structural genomi 97.7 7.4E-06 2.5E-10 69.1 1.4 54 237-296 11-64 (79)
124 2xb1_A Pygopus homolog 2, B-ce 97.7 8.5E-06 2.9E-10 72.5 1.0 56 238-297 3-63 (105)
125 2vpb_A Hpygo1, pygopus homolog 97.7 3E-06 1E-10 69.4 -1.9 54 236-293 6-64 (65)
126 3v43_A Histone acetyltransfera 97.6 5E-06 1.7E-10 74.5 -1.2 56 238-297 5-66 (112)
127 3kqi_A GRC5, PHD finger protei 97.6 1.1E-05 3.8E-10 67.4 0.5 53 238-296 10-62 (75)
128 2kgg_A Histone demethylase jar 97.6 1.2E-05 4.3E-10 62.6 0.4 48 240-293 4-52 (52)
129 3o7a_A PHD finger protein 13 v 97.4 3.9E-05 1.3E-09 59.7 1.9 46 239-293 5-50 (52)
130 1wil_A KIAA1045 protein; ring 97.4 4.8E-05 1.6E-09 65.1 2.0 56 235-294 12-75 (89)
131 3lqh_A Histone-lysine N-methyl 97.3 0.00012 4E-09 71.3 3.5 56 239-296 3-64 (183)
132 3pur_A Lysine-specific demethy 97.0 0.0002 6.8E-09 79.4 2.7 40 252-295 55-94 (528)
133 3kv5_D JMJC domain-containing 96.9 0.00011 3.7E-09 81.2 -1.4 54 237-296 36-89 (488)
134 3kv4_A PHD finger protein 8; e 96.2 0.00038 1.3E-08 76.2 -2.6 52 240-296 6-57 (447)
135 4bbq_A Lysine-specific demethy 95.4 0.0052 1.8E-07 54.7 1.9 40 253-295 73-114 (117)
136 4gne_A Histone-lysine N-methyl 93.9 0.037 1.3E-06 49.4 3.6 59 214-289 35-98 (107)
137 2ku7_A MLL1 PHD3-CYP33 RRM chi 93.8 0.012 4.1E-07 52.4 0.3 41 254-296 1-45 (140)
138 2ys9_A Homeobox and leucine zi 93.1 0.054 1.9E-06 44.9 3.0 47 504-550 11-57 (70)
139 3a1b_A DNA (cytosine-5)-methyl 86.9 0.085 2.9E-06 50.2 -1.1 55 237-296 78-135 (159)
140 1iym_A EL5; ring-H2 finger, ub 82.9 0.67 2.3E-05 34.7 2.5 48 238-295 5-52 (55)
141 2pv0_B DNA (cytosine-5)-methyl 82.4 0.19 6.5E-06 54.0 -1.0 54 237-296 92-149 (386)
142 3rsn_A SET1/ASH2 histone methy 81.7 1.1 3.6E-05 43.4 4.0 50 243-295 9-59 (177)
143 2l0b_A E3 ubiquitin-protein li 79.6 0.43 1.5E-05 40.2 0.4 49 236-295 38-86 (91)
144 2d8s_A Cellular modulator of i 79.2 0.58 2E-05 39.2 1.1 52 236-296 13-68 (80)
145 3k1l_B Fancl; UBC, ring, RWD, 78.2 1.5 5.1E-05 46.7 4.1 59 235-296 305-371 (381)
146 1hlv_A CENP-B, major centromer 77.9 2.2 7.7E-05 37.4 4.6 48 502-552 4-51 (131)
147 2kiz_A E3 ubiquitin-protein li 75.6 0.62 2.1E-05 36.7 0.3 51 235-296 11-61 (69)
148 2glo_A Brinker CG9653-PA; prot 75.4 1.8 6.3E-05 33.4 2.9 47 504-551 4-50 (59)
149 2elh_A CG11849-PA, LD40883P; s 73.8 3.2 0.00011 34.5 4.3 45 500-549 17-61 (87)
150 2ct0_A Non-SMC element 1 homol 73.6 1.3 4.4E-05 36.8 1.7 47 237-294 14-60 (74)
151 2ect_A Ring finger protein 126 72.8 2 6.9E-05 34.5 2.7 50 236-296 13-62 (78)
152 1x4j_A Ring finger protein 38; 72.6 0.47 1.6E-05 38.2 -1.2 49 236-295 21-69 (75)
153 1tc3_C Protein (TC3 transposas 72.3 3.4 0.00012 29.1 3.6 42 505-551 5-46 (51)
154 4bbq_A Lysine-specific demethy 71.6 0.99 3.4E-05 39.8 0.6 38 238-296 7-44 (117)
155 2ecl_A Ring-box protein 2; RNF 69.1 1.7 5.8E-05 35.8 1.4 50 237-296 14-74 (81)
156 2ecm_A Ring finger and CHY zin 68.7 1.1 3.7E-05 33.5 0.2 48 238-295 5-52 (55)
157 2kn9_A Rubredoxin; metalloprot 66.9 5.5 0.00019 33.8 4.2 66 219-299 8-73 (81)
158 1jko_C HIN recombinase, DNA-in 66.4 3.4 0.00012 29.6 2.5 43 505-552 5-47 (52)
159 3dpl_R Ring-box protein 1; ubi 66.2 1.7 5.7E-05 38.3 0.8 27 261-295 72-98 (106)
160 4a0k_B E3 ubiquitin-protein li 66.1 1.4 4.7E-05 39.7 0.3 28 261-296 83-110 (117)
161 2d8t_A Dactylidin, ring finger 64.1 3.8 0.00013 32.4 2.5 48 236-297 13-60 (71)
162 2ep4_A Ring finger protein 24; 64.0 1.1 3.8E-05 35.6 -0.6 49 237-296 14-62 (74)
163 3l11_A E3 ubiquitin-protein li 60.9 2.7 9.2E-05 36.5 1.2 75 236-323 13-89 (115)
164 3hug_A RNA polymerase sigma fa 60.4 7 0.00024 32.4 3.7 48 505-557 37-84 (92)
165 1vyx_A ORF K3, K3RING; zinc-bi 58.5 0.81 2.8E-05 36.3 -2.3 48 237-295 5-56 (60)
166 2o8x_A Probable RNA polymerase 57.2 4.5 0.00015 31.2 1.8 45 505-554 15-59 (70)
167 1v87_A Deltex protein 2; ring- 56.1 2.3 7.9E-05 36.7 -0.1 55 238-296 25-92 (114)
168 1p4w_A RCSB; solution structur 55.9 7.3 0.00025 33.6 3.1 44 503-552 32-75 (99)
169 3c57_A Two component transcrip 53.4 7.3 0.00025 32.8 2.6 44 504-553 26-69 (95)
170 2jn6_A Protein CGL2762, transp 52.9 11 0.00037 31.5 3.6 44 504-551 4-48 (97)
171 4ayc_A E3 ubiquitin-protein li 52.6 3.6 0.00012 37.1 0.6 44 239-296 54-97 (138)
172 3mzy_A RNA polymerase sigma-H 50.9 11 0.00037 33.1 3.5 48 505-558 109-156 (164)
173 2ckl_B Ubiquitin ligase protei 50.6 4.4 0.00015 37.4 0.9 48 237-296 53-100 (165)
174 3nw0_A Non-structural maintena 50.5 4.5 0.00015 40.4 1.0 46 238-294 180-225 (238)
175 2rn7_A IS629 ORFA; helix, all 50.5 14 0.00048 31.3 4.0 46 504-549 5-53 (108)
176 1chc_A Equine herpes virus-1 r 47.0 3.7 0.00013 31.9 -0.3 47 237-296 4-50 (68)
177 2x48_A CAG38821; archeal virus 46.4 12 0.00041 27.7 2.6 39 506-549 14-54 (55)
178 1e4u_A Transcriptional repress 46.1 8.4 0.00029 31.8 1.8 51 237-296 10-60 (78)
179 1fse_A GERE; helix-turn-helix 45.7 10 0.00036 29.4 2.3 45 503-553 9-53 (74)
180 2ysl_A Tripartite motif-contai 45.6 7.5 0.00026 30.5 1.4 50 236-296 18-67 (73)
181 2csy_A Zinc finger protein 183 44.0 5 0.00017 32.5 0.1 47 236-296 13-59 (81)
182 1s7o_A Hypothetical UPF0122 pr 43.8 14 0.00047 32.5 2.9 47 505-556 22-68 (113)
183 1ku3_A Sigma factor SIGA; heli 43.6 14 0.00046 29.3 2.6 50 505-555 10-59 (73)
184 2p7v_B Sigma-70, RNA polymeras 43.4 8.8 0.0003 30.0 1.5 47 505-552 5-51 (68)
185 1x3u_A Transcriptional regulat 43.4 5.1 0.00018 31.8 0.1 42 506-553 17-58 (79)
186 2xi8_A Putative transcription 43.3 8.1 0.00028 28.9 1.2 25 528-552 16-40 (66)
187 1weq_A PHD finger protein 7; s 43.1 15 0.00053 31.4 3.0 34 253-294 44-78 (85)
188 2ct2_A Tripartite motif protei 43.1 7.6 0.00026 31.5 1.1 53 237-296 14-66 (88)
189 2lq6_A Bromodomain-containing 42.9 8.9 0.00031 32.6 1.5 31 239-272 18-49 (87)
190 2r1j_L Repressor protein C2; p 42.4 8.6 0.00029 29.0 1.2 25 528-552 20-44 (68)
191 3bd1_A CRO protein; transcript 42.1 8.3 0.00029 30.8 1.2 25 528-552 13-37 (79)
192 2ea6_A Ring finger protein 4; 41.7 2.5 8.5E-05 32.7 -2.0 51 236-295 13-65 (69)
193 1iuf_A Centromere ABP1 protein 41.6 18 0.00063 32.7 3.6 49 500-551 6-61 (144)
194 2egp_A Tripartite motif-contai 41.5 14 0.00048 29.3 2.4 53 237-296 11-63 (79)
195 1zug_A Phage 434 CRO protein; 41.0 9.2 0.00031 29.2 1.2 25 528-552 18-42 (71)
196 3fl2_A E3 ubiquitin-protein li 40.7 3.2 0.00011 36.6 -1.7 69 238-323 52-120 (124)
197 3lrq_A E3 ubiquitin-protein li 40.6 3.6 0.00012 35.1 -1.4 48 237-296 21-68 (100)
198 2ecw_A Tripartite motif-contai 40.5 5.4 0.00019 31.9 -0.2 52 237-296 18-69 (85)
199 3bs3_A Putative DNA-binding pr 39.5 10 0.00035 29.4 1.3 25 528-552 25-49 (76)
200 2rgt_A Fusion of LIM/homeobox 39.1 0.62 2.1E-05 43.6 -7.0 29 499-527 136-164 (169)
201 2rnj_A Response regulator prot 39.0 11 0.00036 31.3 1.3 45 503-553 27-71 (91)
202 2ecn_A Ring finger protein 141 38.9 8.9 0.0003 29.9 0.8 45 237-296 14-58 (70)
203 1je8_A Nitrate/nitrite respons 38.7 7.5 0.00025 31.9 0.4 45 503-553 19-63 (82)
204 3fmy_A HTH-type transcriptiona 38.5 23 0.00078 28.0 3.2 41 505-552 10-50 (73)
205 3ng2_A RNF4, snurf, ring finge 38.3 2.5 8.5E-05 33.1 -2.5 52 236-296 8-61 (71)
206 3omt_A Uncharacterized protein 37.0 12 0.00041 29.1 1.3 25 528-552 23-47 (73)
207 1adr_A P22 C2 repressor; trans 36.7 12 0.0004 29.0 1.2 25 528-552 20-44 (76)
208 1r69_A Repressor protein CI; g 36.6 12 0.00041 28.3 1.2 25 528-552 16-40 (69)
209 1rp3_A RNA polymerase sigma fa 36.5 17 0.00059 34.0 2.6 47 505-556 187-233 (239)
210 2b5a_A C.BCLI; helix-turn-heli 36.4 12 0.00041 29.0 1.3 25 528-552 25-49 (77)
211 1rzs_A Antirepressor, regulato 36.1 14 0.00047 28.7 1.5 20 528-547 12-31 (61)
212 1jm7_B BARD1, BRCA1-associated 35.7 19 0.00064 31.3 2.5 44 238-296 22-65 (117)
213 3kz3_A Repressor protein CI; f 35.7 13 0.00043 29.7 1.3 25 528-552 27-51 (80)
214 2xeu_A Ring finger protein 4; 35.0 2.4 8.2E-05 32.3 -3.1 50 238-296 3-54 (64)
215 3b7h_A Prophage LP1 protein 11 34.3 14 0.00049 28.7 1.4 24 528-551 22-45 (78)
216 2ecj_A Tripartite motif-contai 34.0 14 0.00048 27.4 1.2 45 237-292 14-58 (58)
217 1y7y_A C.AHDI; helix-turn-heli 33.8 14 0.00049 28.3 1.3 25 528-552 28-52 (74)
218 1xsv_A Hypothetical UPF0122 pr 33.2 27 0.00091 30.5 3.1 48 505-557 25-72 (113)
219 2ckl_A Polycomb group ring fin 32.9 12 0.00041 32.0 0.7 47 237-296 14-60 (108)
220 1e8j_A Rubredoxin; iron-sulfur 31.9 30 0.001 26.8 2.8 15 279-296 32-46 (52)
221 4ap4_A E3 ubiquitin ligase RNF 31.8 3.9 0.00013 35.6 -2.6 51 236-296 70-123 (133)
222 2kpj_A SOS-response transcript 31.5 16 0.00055 30.1 1.3 25 528-552 24-48 (94)
223 2a6c_A Helix-turn-helix motif; 31.2 16 0.00056 29.4 1.2 24 528-551 33-56 (83)
224 1or7_A Sigma-24, RNA polymeras 31.0 25 0.00084 32.0 2.6 46 506-556 141-186 (194)
225 1z6u_A NP95-like ring finger p 30.6 4.8 0.00016 37.1 -2.3 46 238-296 78-123 (150)
226 2jpc_A SSRB; DNA binding prote 30.4 21 0.00071 26.8 1.7 38 510-553 3-40 (61)
227 2djb_A Polycomb group ring fin 30.1 7.9 0.00027 30.6 -0.8 47 237-296 14-60 (72)
228 1u78_A TC3 transposase, transp 30.1 42 0.0014 29.0 3.9 43 504-551 5-47 (141)
229 2yur_A Retinoblastoma-binding 30.1 17 0.00058 28.9 1.2 49 236-295 13-61 (74)
230 2ysj_A Tripartite motif-contai 29.8 8.3 0.00028 29.5 -0.7 46 236-292 18-63 (63)
231 2ef8_A C.ECOT38IS, putative tr 29.6 18 0.00063 28.5 1.3 25 528-552 25-49 (84)
232 2y43_A E3 ubiquitin-protein li 29.4 11 0.00038 31.6 -0.1 48 237-297 21-68 (99)
233 3f6w_A XRE-family like protein 29.0 19 0.00064 28.6 1.2 25 528-552 29-53 (83)
234 1jm7_A BRCA1, breast cancer ty 28.6 8.5 0.00029 32.7 -1.0 48 238-296 21-68 (112)
235 2k9q_A Uncharacterized protein 28.2 19 0.00064 28.3 1.1 25 528-552 17-41 (77)
236 2wiu_B HTH-type transcriptiona 28.2 20 0.00067 28.6 1.2 25 528-552 27-51 (88)
237 2ecv_A Tripartite motif-contai 27.8 5.6 0.00019 31.8 -2.2 52 237-296 18-69 (85)
238 3bdn_A Lambda repressor; repre 27.7 25 0.00085 33.6 2.1 25 528-552 32-56 (236)
239 2kvr_A Ubiquitin carboxyl-term 27.0 28 0.00097 31.6 2.2 24 529-552 72-95 (130)
240 2hin_A GP39, repressor protein 26.8 21 0.0007 29.3 1.1 24 529-552 13-36 (71)
241 2ict_A Antitoxin HIGA; helix-t 26.3 21 0.00072 29.2 1.1 25 528-552 23-47 (94)
242 1lmb_3 Protein (lambda repress 26.2 22 0.00076 28.7 1.2 25 528-552 32-56 (92)
243 1dx8_A Rubredoxin; electron tr 26.1 29 0.001 28.5 1.9 16 279-297 36-51 (70)
244 1tty_A Sigma-A, RNA polymerase 26.0 21 0.00073 29.3 1.1 49 505-554 18-66 (87)
245 2k27_A Paired box protein PAX- 25.8 80 0.0027 28.3 5.1 43 505-552 25-67 (159)
246 3s8q_A R-M controller protein; 25.7 23 0.0008 28.0 1.3 25 528-552 26-50 (82)
247 3t76_A VANU, transcriptional r 25.6 23 0.0008 29.6 1.3 25 528-552 39-63 (88)
248 1s24_A Rubredoxin 2; electron 25.6 32 0.0011 29.5 2.1 24 270-298 57-80 (87)
249 2l49_A C protein; P2 bacteriop 25.1 26 0.00088 28.7 1.5 25 528-552 19-43 (99)
250 3i5g_B Myosin regulatory light 24.8 1.1E+02 0.0036 27.3 5.6 40 503-542 7-51 (153)
251 1u78_A TC3 transposase, transp 24.8 66 0.0022 27.7 4.1 44 505-552 60-105 (141)
252 2q0o_A Probable transcriptiona 24.7 39 0.0013 32.5 2.9 43 504-552 174-216 (236)
253 4b2v_A S64; toxin, ICK; NMR {S 24.7 26 0.00088 24.1 1.1 18 269-294 9-26 (32)
254 3qq6_A HTH-type transcriptiona 24.6 26 0.00088 28.0 1.3 22 528-549 25-46 (78)
255 1pdn_C Protein (PRD paired); p 24.0 47 0.0016 27.8 2.9 42 505-551 17-58 (128)
256 1x57_A Endothelial differentia 23.5 25 0.00086 28.5 1.1 25 528-552 28-52 (91)
257 1bor_A Transcription factor PM 23.2 57 0.0019 24.5 3.0 43 237-296 5-47 (56)
258 1t1h_A Gspef-atpub14, armadill 22.8 28 0.00095 27.6 1.2 47 237-296 7-53 (78)
259 1yk4_A Rubredoxin, RD; electro 22.7 45 0.0016 25.7 2.3 16 279-297 31-46 (52)
260 3t72_q RNA polymerase sigma fa 22.5 64 0.0022 27.7 3.5 51 505-556 19-69 (99)
261 2v79_A DNA replication protein 22.1 59 0.002 29.4 3.3 45 505-552 29-77 (135)
262 1k78_A Paired box protein PAX5 22.0 1.1E+02 0.0037 27.0 5.1 47 503-552 88-144 (149)
263 3ulq_B Transcriptional regulat 21.9 58 0.002 27.2 3.0 44 503-552 27-70 (90)
264 2ppx_A AGR_C_3184P, uncharacte 21.5 31 0.0011 28.6 1.3 25 528-552 45-69 (99)
265 2v3b_B Rubredoxin 2, rubredoxi 21.3 39 0.0013 26.4 1.7 17 279-298 32-48 (55)
266 2ofy_A Putative XRE-family tra 21.2 32 0.0011 27.4 1.3 24 528-551 29-52 (86)
267 3eus_A DNA-binding protein; st 21.1 33 0.0011 27.8 1.3 25 528-552 29-53 (86)
268 1k78_A Paired box protein PAX5 21.1 57 0.002 28.8 3.0 42 505-551 32-73 (149)
269 2ecy_A TNF receptor-associated 20.9 15 0.00052 28.3 -0.8 47 237-296 14-60 (66)
270 2lv7_A Calcium-binding protein 20.8 1.1E+02 0.0039 25.5 4.7 47 502-548 26-79 (100)
271 1l0o_C Sigma factor; bergerat 20.7 21 0.00072 33.4 0.0 44 505-553 198-241 (243)
272 2ewt_A BLDD, putative DNA-bind 20.5 33 0.0011 26.1 1.1 25 528-552 23-49 (71)
273 1v5n_A PDI-like hypothetical p 20.4 55 0.0019 27.7 2.6 34 239-276 48-81 (89)
274 2pmy_A RAS and EF-hand domain- 20.2 47 0.0016 26.7 2.1 46 504-549 19-69 (91)
275 3o9x_A Uncharacterized HTH-typ 20.2 38 0.0013 29.6 1.6 40 506-552 71-110 (133)
276 1fi6_A EH domain protein REPS1 20.2 61 0.0021 26.4 2.8 44 505-548 2-50 (92)
277 2q1z_A RPOE, ECF SIGE; ECF sig 20.1 17 0.00059 32.9 -0.7 45 506-556 136-181 (184)
278 2zet_C Melanophilin; complex, 20.1 36 0.0012 31.8 1.5 54 238-299 68-121 (153)
No 1
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=144.05 Aligned_cols=65 Identities=29% Similarity=0.438 Sum_probs=59.3
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006754 495 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 559 (632)
Q Consensus 495 ~~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k 559 (632)
.+...+|+|++||..|+.+||.+|..++||+..++++||..|||++.||++||||||++.+|..+
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp STTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 34567888999999999999999999999999999999999999999999999999997766553
No 2
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=146.29 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=60.1
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhh
Q 006754 495 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKV 560 (632)
Q Consensus 495 ~~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k~ 560 (632)
++.+.+|.|++||.+|+.+||.+|..++||+..++++||..|||++.||+|||||||++.+|....
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 3 SGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 345678889999999999999999999999999999999999999999999999999977776543
No 3
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.7e-18 Score=146.51 Aligned_cols=65 Identities=23% Similarity=0.442 Sum_probs=59.3
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006754 495 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 559 (632)
Q Consensus 495 ~~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k 559 (632)
.+.+.+|.|++||..|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|..+
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 44667888999999999999999999999999999999999999999999999999996666553
No 4
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.7e-18 Score=146.65 Aligned_cols=68 Identities=21% Similarity=0.407 Sum_probs=61.5
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhhhh
Q 006754 495 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKVES 562 (632)
Q Consensus 495 ~~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k~~~ 562 (632)
++...+|.|++||..|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|..+...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp SCCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 34567888999999999999999999999999999999999999999999999999998777765543
No 5
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=8.3e-19 Score=144.90 Aligned_cols=65 Identities=20% Similarity=0.329 Sum_probs=58.3
Q ss_pred CCccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 494 PSNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 494 ~~~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
++..+.+|+|++||..|+.+||.+|..++||+..++++||..|||++.||+|||||||++.+|..
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 2 SSGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CSSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34466788899999999999999999999999999999999999999999999999999554443
No 6
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=1e-18 Score=144.04 Aligned_cols=65 Identities=31% Similarity=0.366 Sum_probs=58.8
Q ss_pred CCccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 494 PSNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 494 ~~~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
++..+.+|++++||..|+.+||.+|..++||+..++++||..|||++.||++||||||++.+|..
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 2 SSGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 34566788899999999999999999999999999999999999999999999999999555543
No 7
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=2e-18 Score=142.65 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=58.6
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 495 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 495 ~~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
++...++++++||..|+.+||.+|..++||+..++++||..|||++.||++||||||++.++..
T Consensus 3 ~~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 4456677889999999999999999999999999999999999999999999999999766655
No 8
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-18 Score=143.45 Aligned_cols=64 Identities=22% Similarity=0.393 Sum_probs=58.5
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 495 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 495 ~~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
+..+.+|+|++||.+|+.+||.+|..++||+..++++||..|||++.||++||||||++.+|..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 4466788899999999999999999999999999999999999999999999999999655543
No 9
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.72 E-value=5.6e-18 Score=142.52 Aligned_cols=66 Identities=24% Similarity=0.366 Sum_probs=59.5
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhh
Q 006754 495 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKV 560 (632)
Q Consensus 495 ~~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k~ 560 (632)
...+.+|.|++||..|+..||.+|..++||+..+|++||..|||++.||+|||||||++.+|..+.
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 345667888999999999999999999999999999999999999999999999999977665543
No 10
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-18 Score=143.81 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=58.0
Q ss_pred CCccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006754 494 PSNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 557 (632)
Q Consensus 494 ~~~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~ 557 (632)
+++.+.+|+|++||..|+.+||.+|..++||+..++++||..|||++.||++||||||++.+|.
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 2 SSGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CSCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 3456678889999999999999999999999999999999999999999999999999954443
No 11
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-18 Score=145.68 Aligned_cols=63 Identities=24% Similarity=0.283 Sum_probs=57.7
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 496 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 496 ~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
..+.+|+|+.||..|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 456678899999999999999999999999999999999999999999999999999655544
No 12
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.71 E-value=6.3e-18 Score=136.87 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=53.9
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006754 499 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 557 (632)
Q Consensus 499 ~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~ 557 (632)
.+|+|++||..|+..||.+|..++||+..++.+||..|||++.||++||||||++.+|.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 57788999999999999999999999999999999999999999999999999965553
No 13
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-18 Score=143.94 Aligned_cols=62 Identities=24% Similarity=0.420 Sum_probs=57.0
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006754 496 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 557 (632)
Q Consensus 496 ~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~ 557 (632)
..+.+|.|++||.+|+.+||.+|..++||+..++++||..|||++.||+|||||||++.+|.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 35667889999999999999999999999999999999999999999999999999955544
No 14
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.71 E-value=3.8e-18 Score=145.17 Aligned_cols=59 Identities=10% Similarity=0.197 Sum_probs=55.3
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCcchhhhccchhccHH
Q 006754 496 NAKIRRSFHRMPPNAVEKLRQVFAE----NELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 554 (632)
Q Consensus 496 ~~k~rR~r~rft~~Q~~~Le~~F~~----~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~ 554 (632)
..+.||.|+.||.+|+.+||.+|.. ++||+..+|++||..|||++.||+|||||||++.
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~ 76 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSG 76 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSS
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCC
Confidence 3567888999999999999999999 9999999999999999999999999999999943
No 15
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=4.8e-18 Score=144.75 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=58.0
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 495 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 495 ~~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
...+.+|.|+.||..|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|..
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999999999999999999999999999999999999555443
No 16
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=7.8e-18 Score=133.80 Aligned_cols=57 Identities=25% Similarity=0.372 Sum_probs=53.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006754 500 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 556 (632)
Q Consensus 500 rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K 556 (632)
||+++.||..|+..||.+|..++||+..++.+||..|||++.||++||||||++.+|
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 567899999999999999999999999999999999999999999999999996554
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.70 E-value=5.3e-18 Score=136.34 Aligned_cols=58 Identities=28% Similarity=0.462 Sum_probs=51.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006754 499 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 556 (632)
Q Consensus 499 ~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K 556 (632)
.+|+|+.||..|+..||.+|..++||+..++++||..|||++.||++||||||++.+|
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4778899999999999999999999999999999999999999999999999995543
No 18
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.70 E-value=7.6e-18 Score=135.03 Aligned_cols=58 Identities=22% Similarity=0.392 Sum_probs=54.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006754 500 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 557 (632)
Q Consensus 500 rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~ 557 (632)
+|+++.||..|+..||.+|..++||+..++.+||..|||++.||++||||+|++.+|.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 6788999999999999999999999999999999999999999999999999976664
No 19
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.70 E-value=7.4e-18 Score=138.66 Aligned_cols=61 Identities=23% Similarity=0.313 Sum_probs=56.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006754 499 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 559 (632)
Q Consensus 499 ~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k 559 (632)
++|.+++||..|+..||.+|..++||+..++++||..|||++.||+|||||||++.+|..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4678899999999999999999999999999999999999999999999999997666653
No 20
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.70 E-value=1.1e-17 Score=137.46 Aligned_cols=61 Identities=26% Similarity=0.418 Sum_probs=56.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006754 499 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 559 (632)
Q Consensus 499 ~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k 559 (632)
++|++++||..|+..||.+|..++||+..++.+||..|||++.||++||||||++.+|..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 4678899999999999999999999999999999999999999999999999997666654
No 21
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.70 E-value=1.2e-17 Score=145.71 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=61.2
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhhhh
Q 006754 495 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKVES 562 (632)
Q Consensus 495 ~~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k~~~ 562 (632)
...+.+|+|++||..|+..||.+|..++||+..+|.+||..|||++.||+|||||||++.+|..+.+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 34567888999999999999999999999999999999999999999999999999998877775543
No 22
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.70 E-value=1.3e-17 Score=141.53 Aligned_cols=64 Identities=23% Similarity=0.455 Sum_probs=57.9
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006754 496 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 559 (632)
Q Consensus 496 ~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k 559 (632)
..+.+|.|++||..|+..||.+|..++||+..+|.+||..|||++.||++||||||++.+|..+
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 3556788999999999999999999999999999999999999999999999999997776653
No 23
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-17 Score=141.56 Aligned_cols=65 Identities=26% Similarity=0.374 Sum_probs=58.5
Q ss_pred CCccccCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 494 PSNAKIRRSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 494 ~~~~k~rR~r~rft~~Q~~~Le~~F~~---~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
+++.++++++++|+..|+..|+.+|.+ |+||+..+|++||..|||++.||+|||||+|++.++..
T Consensus 2 s~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 2 SSGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 345667888899999999999999998 59999999999999999999999999999999766654
No 24
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.69 E-value=1.4e-17 Score=136.98 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=57.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhh
Q 006754 499 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKV 560 (632)
Q Consensus 499 ~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k~ 560 (632)
.+|+|+.||..|+..||.+|..++||+..+++.||..|||++.||+|||||||++.++..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 46788999999999999999999999999999999999999999999999999977666543
No 25
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.69 E-value=1.9e-17 Score=139.25 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=58.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006754 497 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 559 (632)
Q Consensus 497 ~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k 559 (632)
.+.+|.+++||..|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|..+
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 456778899999999999999999999999999999999999999999999999997776654
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.69 E-value=5.9e-18 Score=139.03 Aligned_cols=62 Identities=24% Similarity=0.388 Sum_probs=57.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006754 498 KIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 559 (632)
Q Consensus 498 k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k 559 (632)
+.+|+|+.||..|+..||.+|..++||+..++.+||..|||++.||++||||||++.+|..+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 45788899999999999999999999999999999999999999999999999997666554
No 27
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.69 E-value=6.3e-18 Score=136.34 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=50.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006754 498 KIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 556 (632)
Q Consensus 498 k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K 556 (632)
+.+|+++.||..|+.+||.+|..++||+..++++||..|||++.||++||||||++.+|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 35778899999999999999999999999999999999999999999999999995443
No 28
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=2.2e-17 Score=137.27 Aligned_cols=64 Identities=23% Similarity=0.358 Sum_probs=58.0
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 495 SNAKIRRSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 495 ~~~k~rR~r~rft~~Q~~~Le~~F~~---~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
..++.+|++++|+..|+..|+.+|.. ++||+..+|++||..|||++.||++||||+|++.++..
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 34566788899999999999999987 99999999999999999999999999999999766654
No 29
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.69 E-value=7.9e-18 Score=137.37 Aligned_cols=58 Identities=28% Similarity=0.466 Sum_probs=54.4
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006754 498 KIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 555 (632)
Q Consensus 498 k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~ 555 (632)
+.+|+|+.||..|+..||.+|..++||+..++++||..|||++.||++||||||++.+
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 59 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDK 59 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHh
Confidence 3578899999999999999999999999999999999999999999999999999443
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.69 E-value=1.6e-17 Score=138.52 Aligned_cols=61 Identities=20% Similarity=0.307 Sum_probs=56.1
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006754 497 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 557 (632)
Q Consensus 497 ~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~ 557 (632)
.+.+|.|++||..|+..||.+|..++||+..+|++||..|||++.||++||||||++.+|.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 4567888999999999999999999999999999999999999999999999999954443
No 31
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.68 E-value=8.9e-18 Score=143.09 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=54.0
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCcchhhhccchhccHH
Q 006754 496 NAKIRRSFHRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 554 (632)
Q Consensus 496 ~~k~rR~r~rft~~Q~~~Le~~F~~-----~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~ 554 (632)
..++||.|+.||.+|+.+|| .|.. ++||+..+|++||..|||++.||+|||||||++.
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~ 76 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSG 76 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCS
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCC
Confidence 45678889999999999999 7999 9999999999999999999999999999999943
No 32
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.68 E-value=9.7e-18 Score=134.55 Aligned_cols=57 Identities=26% Similarity=0.405 Sum_probs=47.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006754 497 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 553 (632)
Q Consensus 497 ~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k 553 (632)
.+.+|++++||..|+..||.+|..++||+..++.+||..|||++.||++||||||++
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 456778899999999999999999999999999999999999999999999999994
No 33
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3e-17 Score=143.41 Aligned_cols=67 Identities=21% Similarity=0.340 Sum_probs=60.8
Q ss_pred CCccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------------CCcchhhhccchhccHHHHhh
Q 006754 494 PSNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELS---------------LEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 494 ~~~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lg---------------Lt~~qV~iWFqNrR~k~~K~~ 558 (632)
++..+.+|.|+.|++.|+.+||.+|..++||+..+|++||..|| |++.||++||||||++.+|..
T Consensus 2 ~~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 2 SSGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CSSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 34567788999999999999999999999999999999999999 999999999999999776665
Q ss_pred hh
Q 006754 559 KV 560 (632)
Q Consensus 559 k~ 560 (632)
+.
T Consensus 82 ~~ 83 (95)
T 2cuf_A 82 NI 83 (95)
T ss_dssp HC
T ss_pred hc
Confidence 43
No 34
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.68 E-value=1.5e-17 Score=141.41 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=53.1
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 497 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 497 ~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
...+|.|++||..|+..||.+|..++||+..+|++||..|||++.||+|||||||++.+|..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 45678899999999999999999999999999999999999999999999999999666544
No 35
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.3e-17 Score=137.37 Aligned_cols=58 Identities=21% Similarity=0.418 Sum_probs=53.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 501 RSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 501 R~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
+++.+||.+|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 3456789999999999999999999999999999999999999999999999666554
No 36
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-17 Score=140.34 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=56.5
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006754 497 AKIRRSFHRMPPNAVEKLRQVFAEN----ELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 557 (632)
Q Consensus 497 ~k~rR~r~rft~~Q~~~Le~~F~~~----~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~ 557 (632)
.+.+|.|+.||.+|+.+||.+|..+ +||+..+|++||..|||++.||+|||||||++.+|.
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 5567888999999999999999999 999999999999999999999999999999965553
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.67 E-value=2.1e-17 Score=132.44 Aligned_cols=57 Identities=23% Similarity=0.445 Sum_probs=49.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 502 SFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 502 ~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
+|++||..|+..||.+|..++||+..++++||..|||++.||++||||||++.+|..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 467899999999999999999999999999999999999999999999999666554
No 38
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=3.9e-17 Score=141.95 Aligned_cols=54 Identities=11% Similarity=0.236 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
+||.+|+.+||..|..++||+..+|++||..|||++.||+|||||||++.+|..
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 789999999999999999999999999999999999999999999999544433
No 39
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.67 E-value=3e-17 Score=129.81 Aligned_cols=55 Identities=25% Similarity=0.407 Sum_probs=52.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006754 499 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 553 (632)
Q Consensus 499 ~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k 553 (632)
++|.+++||..|+..||.+|..++||+..++.+||..|||++.||++||||||++
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 56 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYK 56 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhcc
Confidence 4677899999999999999999999999999999999999999999999999994
No 40
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=4e-17 Score=137.99 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=50.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006754 503 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 557 (632)
Q Consensus 503 r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~ 557 (632)
+.+||.+|+.+|+.+|..|+||+..+|++||..|||++.||+|||||+|++.++.
T Consensus 7 r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999955443
No 41
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.66 E-value=5.8e-17 Score=134.84 Aligned_cols=63 Identities=27% Similarity=0.435 Sum_probs=57.2
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 496 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 496 ~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
.++.+|.+++||..|+..||.+|..++||+..++++||..|||++.||+|||||||++.+|..
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 355678899999999999999999999999999999999999999999999999999555443
No 42
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.66 E-value=2.9e-17 Score=141.50 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=53.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006754 497 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 557 (632)
Q Consensus 497 ~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~ 557 (632)
.+.+|.|++||..|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 4567888999999999999999999999999999999999999999999999999966554
No 43
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.66 E-value=3.2e-17 Score=134.13 Aligned_cols=58 Identities=31% Similarity=0.519 Sum_probs=54.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006754 500 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 557 (632)
Q Consensus 500 rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~ 557 (632)
||+|++||+.|+..||.+|..++||+..+++.||..|||++.||++||||||++.+|.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 6788999999999999999999999999999999999999999999999999955443
No 44
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=6.2e-17 Score=134.80 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=54.3
Q ss_pred CCCCCCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 500 RRSFHRMPPNAVEKLRQVFA-ENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 500 rR~r~rft~~Q~~~Le~~F~-~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
++.+++||..|+.+||.+|. .++||+..+|++||..|||++.||++||||||++.+|..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 45678899999999999999 599999999999999999999999999999999666655
No 45
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.66 E-value=4.8e-17 Score=128.86 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006754 504 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 557 (632)
Q Consensus 504 ~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~ 557 (632)
+.||..|+..||..|..++||+..+|.+||..|||++.||++||||||++.+|.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999966653
No 46
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=6.9e-17 Score=134.04 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=53.5
Q ss_pred CCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 501 RSFHRMPPNAVEKLRQVFAE-NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 501 R~r~rft~~Q~~~Le~~F~~-~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
+.+++||..|+.+||.+|.. ++||+..+|++||..|||++.||++||||||++.+|..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 45688999999999999996 99999999999999999999999999999999666654
No 47
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=6.9e-17 Score=133.30 Aligned_cols=59 Identities=25% Similarity=0.379 Sum_probs=55.9
Q ss_pred CCccccCCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006754 494 PSNAKIRRSFHRMPPNAVEKLRQVFAE-NELPSRIVKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 494 ~~~~k~rR~r~rft~~Q~~~Le~~F~~-~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
++.+..+|.|+.|+.+|+.+|+.+|+. ++||+...|+.||++|||++++|+|||||+|+
T Consensus 2 ~~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~ 61 (71)
T 1wi3_A 2 SSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61 (71)
T ss_dssp CCCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhcccee
Confidence 345677899999999999999999999 99999999999999999999999999999999
No 48
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.65 E-value=6.6e-17 Score=134.37 Aligned_cols=60 Identities=32% Similarity=0.434 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006754 500 RRSFHRMPPNAVEKLRQVF---AENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 559 (632)
Q Consensus 500 rR~r~rft~~Q~~~Le~~F---~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k 559 (632)
||++++||..|+..|+.+| ..++||+..+|..||..|||++.||++||||+|++.++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 6778899999999999999 89999999999999999999999999999999997766654
No 49
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.65 E-value=6.7e-17 Score=138.51 Aligned_cols=62 Identities=31% Similarity=0.390 Sum_probs=56.5
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhhhh
Q 006754 500 RRSFHRMPPNAVEKLRQVF---AENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKVE 561 (632)
Q Consensus 500 rR~r~rft~~Q~~~Le~~F---~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k~~ 561 (632)
||+|++|+..|+..|+.+| ..++||+..+|++||..|||++.||++||||||++.+|.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 6778899999999999999 8999999999999999999999999999999999887766443
No 50
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=9.6e-17 Score=134.63 Aligned_cols=57 Identities=25% Similarity=0.449 Sum_probs=52.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006754 500 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 556 (632)
Q Consensus 500 rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K 556 (632)
.+.+++||.+|+.+||.+|..++||+..+|++||..|||++.||++||||||++.+|
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk 65 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRN 65 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHH
Confidence 344688999999999999999999999999999999999999999999999994443
No 51
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=8.1e-17 Score=141.14 Aligned_cols=63 Identities=21% Similarity=0.310 Sum_probs=54.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006754 497 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 559 (632)
Q Consensus 497 ~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k 559 (632)
...+|+|+.||..|+..||.+|..++||+..+|++||..|||++.||+|||||||++.+|..+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 446778899999999999999999999999999999999999999999999999997666543
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=4.2e-17 Score=132.15 Aligned_cols=57 Identities=30% Similarity=0.375 Sum_probs=52.9
Q ss_pred cCCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006754 499 IRRSFHRMPPNAVEKLRQVF---AENELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 555 (632)
Q Consensus 499 ~rR~r~rft~~Q~~~Le~~F---~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~ 555 (632)
.++++++|+..|+..|+.+| ..++||+..++++||..|||++.||++||||+|++.+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~k 62 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 62 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhc
Confidence 36677889999999999999 8999999999999999999999999999999999543
No 53
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.64 E-value=1e-16 Score=136.78 Aligned_cols=58 Identities=26% Similarity=0.263 Sum_probs=52.4
Q ss_pred CCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 501 RSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 501 R~r~rft~~Q~~~Le~~F~~---~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
+++++|+..|+..|+.+|.. ++||+..+|++||..|||++.||++||||||++.++..
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 44566999999999999999 99999999999999999999999999999999655544
No 54
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.63 E-value=1.5e-16 Score=127.34 Aligned_cols=53 Identities=30% Similarity=0.337 Sum_probs=50.2
Q ss_pred CCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006754 503 FHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 555 (632)
Q Consensus 503 r~rft~~Q~~~Le~~F~~---~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~ 555 (632)
+++||..|+.+||.+|.. ++||+..++++||..|||++.||++||||||++.+
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~k 57 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 57 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccc
Confidence 468999999999999999 99999999999999999999999999999999544
No 55
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.62 E-value=3.8e-16 Score=129.96 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=54.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006754 498 KIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 557 (632)
Q Consensus 498 k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~ 557 (632)
..++.|+.||..|+..||.+|..++||+..++++||..|||++.||++||||||++.+|.
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhh
Confidence 346678899999999999999999999999999999999999999999999999944443
No 56
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.61 E-value=2.7e-16 Score=137.73 Aligned_cols=61 Identities=21% Similarity=0.403 Sum_probs=53.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006754 497 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 557 (632)
Q Consensus 497 ~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~ 557 (632)
...+|.|++||..|+..||.+|..++||+..+|++||..|||++.||++||||||++.+|.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 4456778999999999999999999999999999999999999999999999999965543
No 57
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=7.7e-16 Score=136.79 Aligned_cols=66 Identities=24% Similarity=0.340 Sum_probs=59.3
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh---------------------CCCcchhhhccchhccH
Q 006754 495 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKEL---------------------SLEPEKVNKWFKNARYL 553 (632)
Q Consensus 495 ~~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~l---------------------gLt~~qV~iWFqNrR~k 553 (632)
+.+++||.|+.|++.|+.+||.+|..++||+..+|++||..| +|++.+|+|||||||++
T Consensus 2 ~~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 2 SSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TTCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 446678899999999999999999999999999999999999 79999999999999997
Q ss_pred HHHhhhh
Q 006754 554 ALKARKV 560 (632)
Q Consensus 554 ~~K~~k~ 560 (632)
.++..+.
T Consensus 82 ~kr~~~~ 88 (102)
T 2da6_A 82 EAFRQKL 88 (102)
T ss_dssp HHHHHHH
T ss_pred HHHhhHh
Confidence 6555433
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=8.5e-16 Score=133.01 Aligned_cols=56 Identities=21% Similarity=0.421 Sum_probs=50.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 503 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 503 r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
+.+||.+|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.++..
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 34589999999999999999999999999999999999999999999999544433
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.60 E-value=5.1e-16 Score=133.40 Aligned_cols=58 Identities=28% Similarity=0.299 Sum_probs=53.5
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHH
Q 006754 497 AKIRRSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 554 (632)
Q Consensus 497 ~k~rR~r~rft~~Q~~~Le~~F~~---~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~ 554 (632)
.++++++++|+..|+..||.+|.. ++||+..+|++||..|||++.||++||||||++.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~ 85 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKE 85 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhc
Confidence 345666889999999999999999 9999999999999999999999999999999943
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.58 E-value=6.4e-16 Score=127.10 Aligned_cols=49 Identities=20% Similarity=0.454 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006754 507 PPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 555 (632)
Q Consensus 507 t~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~ 555 (632)
|.+|+.+||..|..++||+..+|++||..|||+..||++||||||++.+
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~K 60 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQ 60 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhh
Confidence 7899999999999999999999999999999999999999999999544
No 61
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=2.9e-16 Score=131.07 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=50.0
Q ss_pred CCCCCCCHHHHHHHHHHH-HhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006754 501 RSFHRMPPNAVEKLRQVF-AENELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 555 (632)
Q Consensus 501 R~r~rft~~Q~~~Le~~F-~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~ 555 (632)
+.+.+++..|+.+||.+| ..++||+..+|++||..|||++.||+|||||||++.+
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r 65 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 65 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCC
Confidence 344567999999999999 9999999999999999999999999999999999433
No 62
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.56 E-value=1.3e-15 Score=143.56 Aligned_cols=61 Identities=31% Similarity=0.493 Sum_probs=56.2
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006754 496 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 556 (632)
Q Consensus 496 ~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K 556 (632)
..++||+|++|+..|+..||.+|..++||+..+|++||..|||++.||+|||||||++.+|
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3566788999999999999999999999999999999999999999999999999995443
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.56 E-value=8.5e-16 Score=144.33 Aligned_cols=61 Identities=30% Similarity=0.409 Sum_probs=53.2
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006754 496 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 556 (632)
Q Consensus 496 ~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K 556 (632)
..++||+|+.||..|+..||.+|..++||+..+|.+||..|||++.||+|||||||++.+|
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 144 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhc
Confidence 3566788999999999999999999999999999999999999999999999999995443
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.56 E-value=7.7e-16 Score=147.35 Aligned_cols=63 Identities=24% Similarity=0.293 Sum_probs=50.3
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 496 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 496 ~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
..++||+|++||..|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 355678899999999999999999999999999999999999999999999999999665554
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.55 E-value=1.5e-15 Score=144.48 Aligned_cols=60 Identities=23% Similarity=0.387 Sum_probs=52.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006754 497 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 556 (632)
Q Consensus 497 ~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K 556 (632)
.++||+|+.||..|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 158 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhc
Confidence 466788999999999999999999999999999999999999999999999999995544
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.55 E-value=2.3e-15 Score=124.97 Aligned_cols=53 Identities=28% Similarity=0.486 Sum_probs=49.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006754 504 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 556 (632)
Q Consensus 504 ~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K 556 (632)
..+|..|+.+||..|..++||+..+|.+||..|||++.||+|||||||++.+|
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr 61 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 61 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhh
Confidence 46899999999999999999999999999999999999999999999994433
No 67
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=2e-15 Score=124.11 Aligned_cols=55 Identities=27% Similarity=0.381 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006754 505 RMPPNAVEKLRQVFA---ENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 559 (632)
Q Consensus 505 rft~~Q~~~Le~~F~---~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k 559 (632)
+||.+|+..|+.+|. .+|||+..+|++||..|||++.||++||||+|++.+|...
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 689999999999999 9999999999999999999999999999999997766543
No 68
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.54 E-value=1.1e-15 Score=135.31 Aligned_cols=58 Identities=29% Similarity=0.437 Sum_probs=49.9
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH------------------hC---CCcchhhhccchhccH
Q 006754 496 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKE------------------LS---LEPEKVNKWFKNARYL 553 (632)
Q Consensus 496 ~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~------------------lg---Lt~~qV~iWFqNrR~k 553 (632)
.++.||.|+.|++.|+.+||.+|..++||+..+|++||.. || |++.||++||||||++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 3567888999999999999999999999999999999999 99 9999999999999994
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.7e-15 Score=122.57 Aligned_cols=49 Identities=22% Similarity=0.355 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006754 504 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 504 ~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
..++.+|+..||.+|..++||+..+|++||..|||++.||+|||||||+
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRa 56 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQA 56 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccC
Confidence 4457999999999999999999999999999999999999999999999
No 70
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.52 E-value=2.2e-15 Score=143.40 Aligned_cols=63 Identities=25% Similarity=0.360 Sum_probs=52.8
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 496 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 496 ~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
..+.||+|+.||..|+..||.+|..++||+..+|++||..|||++.||+|||||||++.++..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 355678899999999999999999999999999999999999999999999999999544433
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.51 E-value=1.9e-15 Score=123.87 Aligned_cols=46 Identities=28% Similarity=0.503 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHH-HhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006754 507 PPNAVEKLRQVF-AENELPSRIVKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 507 t~~Q~~~Le~~F-~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
.+.|+.+||.+| ..++||+..+|++||..|||+++||+|||||||+
T Consensus 8 ~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~ 54 (64)
T 1x2m_A 8 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRN 54 (64)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 346899999999 5799999999999999999999999999999999
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.49 E-value=6.6e-15 Score=139.48 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=55.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006754 497 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 556 (632)
Q Consensus 497 ~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K 556 (632)
.+.||.|++|+..|+..||.+|..++||+..+|.+||..|||++.||+|||||||++.+|
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 456778899999999999999999999999999999999999999999999999995543
No 73
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.40 E-value=2.6e-13 Score=117.88 Aligned_cols=56 Identities=36% Similarity=0.461 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhhh
Q 006754 504 HRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 559 (632)
Q Consensus 504 ~rft~~Q~~~Le~~F~~---~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~k 559 (632)
.-|+..+++.|+.||.+ +|||+..+|++||+.|||++.||++||||+|.+.++...
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 45899999999999998 899999999999999999999999999999998776653
No 74
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.37 E-value=2.7e-13 Score=117.52 Aligned_cols=59 Identities=29% Similarity=0.828 Sum_probs=50.5
Q ss_pred CCCCcccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchhhH
Q 006754 230 TDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKMEI 298 (632)
Q Consensus 230 ~dg~~~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~~~ 298 (632)
.+.+...++++|.+|+.+ ++||+||+ |+++||++|+.|||. .+|.|+ |||+.|...+..
T Consensus 17 ~~~~~d~n~~~C~vC~~~-----g~LL~CD~-C~~~fH~~Cl~PpL~--~~P~g~--W~C~~C~~~~~~ 75 (88)
T 1fp0_A 17 EFGTLDDSATICRVCQKP-----GDLVMCNQ-CEFCFHLDCHLPALQ--DVPGEE--WSCSLCHVLPDL 75 (88)
T ss_dssp CCCSSSSSSSCCSSSCSS-----SCCEECTT-SSCEECTTSSSTTCC--CCCSSS--CCCCSCCCCCSS
T ss_pred cccccCCCCCcCcCcCCC-----CCEEECCC-CCCceecccCCCCCC--CCcCCC--cCCccccCCCcc
Confidence 344556778899999976 78999995 999999999999998 799998 999999876543
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.36 E-value=1e-13 Score=136.04 Aligned_cols=59 Identities=27% Similarity=0.404 Sum_probs=51.8
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------------------CCcchhhhccchhccH
Q 006754 495 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELS---------------------LEPEKVNKWFKNARYL 553 (632)
Q Consensus 495 ~~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lg---------------------Lt~~qV~iWFqNrR~k 553 (632)
..++.||.|+.|++.|+.+||.+|..++||+..+|++||..|| ||+.||++||||||++
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 4466788999999999999999999999999999999999999 9999999999999984
No 76
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.36 E-value=1.2e-13 Score=119.63 Aligned_cols=62 Identities=24% Similarity=0.650 Sum_probs=50.7
Q ss_pred ccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCC--CCCCCCCccccCcCcchhhHh
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTE--SIPPGDQGWFCKFCECKMEII 299 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~--~iP~gd~~W~C~~C~~k~~~~ 299 (632)
.+++.+|.+|+.++...++.||+||+ |+++||++||+|||... .+|.+. |||+.|......+
T Consensus 13 ~e~~~~C~vC~~~~~~~~~~ll~CD~-C~~~yH~~Cl~Ppl~~~~~~~p~g~--W~C~~C~~~~~~~ 76 (88)
T 1wev_A 13 MEMGLACVVCRQMTVASGNQLVECQE-CHNLYHQDCHKPQVTDKEVNDPRLV--WYCARCTRQMKRM 76 (88)
T ss_dssp HHHCCSCSSSCCCCCCTTCCEEECSS-SCCEEETTTSSSCCCHHHHHCTTCC--CCCHHHHHHHCCS
T ss_pred CCCCCcCCCCCCCCCCCCCceEECCC-CCCeEcCccCCCcccccccCCCCCC--eeCccccchhhhh
Confidence 44578999999986555689999995 99999999999999721 289998 9999998766433
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.34 E-value=3.8e-13 Score=134.04 Aligned_cols=60 Identities=30% Similarity=0.504 Sum_probs=52.5
Q ss_pred CCCccccCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------------------CCcchhhhccchhc
Q 006754 493 LPSNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELS---------------------LEPEKVNKWFKNAR 551 (632)
Q Consensus 493 ~~~~~k~rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lg---------------------Lt~~qV~iWFqNrR 551 (632)
.+..++.||.|+.|++.|+++|+.+|..|+||+..+|++||..+| ||+.||++||||||
T Consensus 136 ~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 136 EPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp ------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 344567788999999999999999999999999999999999998 89999999999999
Q ss_pred c
Q 006754 552 Y 552 (632)
Q Consensus 552 ~ 552 (632)
+
T Consensus 216 ~ 216 (221)
T 2h8r_A 216 K 216 (221)
T ss_dssp T
T ss_pred h
Confidence 8
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.31 E-value=1e-12 Score=106.38 Aligned_cols=52 Identities=38% Similarity=1.072 Sum_probs=45.4
Q ss_pred ccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+.++.+|.+|+.+ ++||+||+ |+++||++||+|||. .+|.++ |||+.|..+.
T Consensus 6 d~~~~~C~vC~~~-----g~ll~Cd~-C~~~fH~~Cl~ppl~--~~p~g~--W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG-----GELLCCDT-CPSSYHIHCLNPPLP--EIPNGE--WLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC-----SSCBCCSS-SCCCBCSSSSSSCCS--SCCSSC--CCCTTTTTTC
T ss_pred cCCCCcCCCCCCC-----CCEEEcCC-CCHHHcccccCCCcC--cCCCCc--cCChhhcCch
Confidence 3456889999875 78999995 999999999999998 799998 9999997654
No 79
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.28 E-value=4e-13 Score=109.64 Aligned_cols=59 Identities=27% Similarity=0.718 Sum_probs=48.1
Q ss_pred ccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCC-CCCCCccccCcCcchh
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESI-PPGDQGWFCKFCECKM 296 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~i-P~gd~~W~C~~C~~k~ 296 (632)
+.++.+|.+|+.++..+++.||+||+ |+++||++||+|||....+ |.+. |||+.|....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~-C~~~~H~~C~~p~l~~~~~~p~~~--W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDK-CGQGYHQLCHTPHIDSSVIDSDEK--WLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSS-SCCEEETTTSSSCCCHHHHHSSCC--CCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCC-CChHHHhhhCCCcccccccCCCCC--EECCCCcCcc
Confidence 34578999999986556789999995 9999999999999873224 7888 9999997643
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=104.90 Aligned_cols=52 Identities=37% Similarity=0.914 Sum_probs=45.5
Q ss_pred CcccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcc
Q 006754 233 SVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCEC 294 (632)
Q Consensus 233 ~~~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~ 294 (632)
....++.+|.+|+.+ ++||+||+ |+++||++||+||+. .+|.++ |||+.|..
T Consensus 6 ~~~~~~~~C~vC~~~-----g~ll~CD~-C~~~fH~~Cl~p~l~--~~p~g~--W~C~~C~~ 57 (61)
T 2l5u_A 6 YETDHQDYCEVCQQG-----GEIILCDT-CPRAYHMVCLDPDME--KAPEGK--WSCPHCEK 57 (61)
T ss_dssp CSSCCCSSCTTTSCC-----SSEEECSS-SSCEEEHHHHCTTCC--SCCCSS--CCCTTGGG
T ss_pred ccCCCCCCCccCCCC-----CcEEECCC-CChhhhhhccCCCCC--CCCCCc--eECccccc
Confidence 345567899999975 79999995 999999999999987 799998 99999965
No 81
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.27 E-value=1.1e-12 Score=107.56 Aligned_cols=52 Identities=40% Similarity=0.954 Sum_probs=45.4
Q ss_pred ccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
..++++|.+|+.+ ++||+||+ |+++||++||+|||. .+|.++ |||+.|....
T Consensus 5 ~~~~~~C~vC~~~-----g~ll~CD~-C~~~fH~~Cl~ppl~--~~P~g~--W~C~~C~~~~ 56 (66)
T 1xwh_A 5 QKNEDECAVCRDG-----GELICCDG-CPRAFHLACLSPPLR--EIPSGT--WRCSSCLQAT 56 (66)
T ss_dssp CSCCCSBSSSSCC-----SSCEECSS-CCCEECTTTSSSCCS--SCCSSC--CCCHHHHHTC
T ss_pred CCCCCCCccCCCC-----CCEEEcCC-CChhhcccccCCCcC--cCCCCC--eECccccCcc
Confidence 3457899999975 78999995 999999999999998 799988 9999997543
No 82
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.4e-12 Score=106.86 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006754 508 PNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 508 ~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
.+|+..|+.+|..|+||+.+++..||..|||+.++|+|||||||+
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 688999999999999999999999999999999999999999998
No 83
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.25 E-value=1.9e-12 Score=104.21 Aligned_cols=50 Identities=38% Similarity=1.063 Sum_probs=44.7
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
++++|.+|+.+ +.||+||+ |+++||++|++|||. .+|.++ |||+.|....
T Consensus 4 ~~~~C~vC~~~-----g~ll~Cd~-C~~~fH~~Cl~ppl~--~~p~g~--W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS-----GQLLMCDT-CSRVYHLDCLDPPLK--TIPKGM--WICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC-----SSCEECSS-SSCEECGGGSSSCCS--SCCCSC--CCCHHHHHHH
T ss_pred CCCCCcCCCCC-----CcEEEcCC-CCcCEECCcCCCCcC--CCCCCc--eEChhccChh
Confidence 46899999976 79999995 999999999999998 799988 9999997655
No 84
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.24 E-value=2.9e-12 Score=105.47 Aligned_cols=51 Identities=27% Similarity=0.550 Sum_probs=43.9
Q ss_pred ccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
......|.+|+.+ ++||+||+ |+++||++||+|||. .+|.++ |||+.|...
T Consensus 9 ~~~~~~C~vC~~~-----~~ll~Cd~-C~~~~H~~Cl~P~l~--~~P~g~--W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDG-----TDVLRCTH-CAAAFHWRCHFPAGT--SRPGTG--LRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCC-----TTCEECSS-SCCEECHHHHCTTTC--CCCSSS--CCCTTTTTC
T ss_pred CCCCCCcCCCCCC-----CeEEECCC-CCCceecccCCCccC--cCCCCC--EECccccCC
Confidence 3445679999865 78999995 999999999999998 799998 999999653
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.24 E-value=3e-12 Score=99.52 Aligned_cols=48 Identities=42% Similarity=1.043 Sum_probs=42.5
Q ss_pred cccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcc
Q 006754 240 ICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCEC 294 (632)
Q Consensus 240 ~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~ 294 (632)
+|.+|+..+ +++.||+||+ |+++||++|++|||. .+|.++ |||+.|..
T Consensus 2 ~C~vC~~~~--~~~~ll~Cd~-C~~~~H~~Cl~p~l~--~~P~g~--W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG--EDDKLILCDE-CNKAFHLFCLRPALY--EVPDGE--WQCPACQP 49 (51)
T ss_dssp CCTTTCCSS--CCSCCEECTT-TCCEECHHHHCTTCC--SCCSSC--CSCTTTSC
T ss_pred CCCCCCCCC--CCCCEEECCC-CChhhCcccCCCCcC--CCCCCc--EECcCccc
Confidence 699999875 3578999995 999999999999998 799998 99999964
No 86
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=2.6e-12 Score=102.08 Aligned_cols=50 Identities=36% Similarity=1.014 Sum_probs=44.0
Q ss_pred ccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcc
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCEC 294 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~ 294 (632)
..++++|.+|+.. +.||+||+ |+++||++||+|||. .+|.++ |||+.|..
T Consensus 6 ~~~~~~C~vC~~~-----g~ll~Cd~-C~~~~H~~Cl~ppl~--~~p~g~--W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS-----GQLLMCDT-CSRVYHLDCLDPPLK--TIPKGM--WICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS-----SCCEECSS-SSCEECSSSSSSCCC--SCCCSS--CCCHHHHC
T ss_pred CCCCCCCccCCCC-----CeEEEcCC-CCcceECccCCCCcC--CCCCCc--eEChhhhC
Confidence 3456899999976 79999995 999999999999998 799988 99999953
No 87
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=2.3e-12 Score=112.43 Aligned_cols=57 Identities=35% Similarity=0.838 Sum_probs=48.4
Q ss_pred CcccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 233 SVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 233 ~~~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+...++.+|.+|+..+ +.+.||+||+ |+++||++||+|||. .+|.++ |||+.|....
T Consensus 11 ~~~~~~~~C~vC~~~~--~~~~ll~CD~-C~~~~H~~Cl~Ppl~--~~P~g~--W~C~~C~~~~ 67 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGD--EDDKLLFCDG-CDDNYHIFCLLPPLP--EIPRGI--WRCPKCILAE 67 (92)
T ss_dssp CCCCCCCCCSSSCCSG--GGGGCEECTT-TCCEECSSSSSSCCS--SCCSSC--CCCHHHHHHH
T ss_pred hhccCCCCCccCCCcC--CCCCEEEcCC-CCchhccccCCCCcc--cCCCCC--cCCccCcCcc
Confidence 4456678999999874 2467999995 999999999999998 799998 9999997653
No 88
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.20 E-value=3.4e-12 Score=106.48 Aligned_cols=55 Identities=38% Similarity=0.839 Sum_probs=47.1
Q ss_pred ccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
..++.+|.+|+.+++.+++.||+||+ |+++||++|++|| .+|.|+ |||+.|....
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~-C~~~~H~~Cl~~~----~vP~g~--W~C~~C~~~~ 67 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDM-CNLAVHQECYGVP----YIPEGQ--WLCRHCLQSR 67 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSS-SCCEEEHHHHTCS----SCCSSC--CCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCC-CCCccccccCCCC----cCCCCC--cCCccCcCcC
Confidence 34568999999986666789999995 9999999999998 388898 9999997654
No 89
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=1.4e-11 Score=104.37 Aligned_cols=54 Identities=39% Similarity=0.926 Sum_probs=45.1
Q ss_pred CcccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCC-CCccccCcCcc
Q 006754 233 SVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPG-DQGWFCKFCEC 294 (632)
Q Consensus 233 ~~~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~g-d~~W~C~~C~~ 294 (632)
+...++ +|.+|+..+ +++.||+||+ |+++||++||+|||. .+|.| + |||+.|..
T Consensus 22 w~C~~c-~C~vC~~~~--~~~~ll~CD~-C~~~yH~~Cl~Ppl~--~~P~g~~--W~C~~C~~ 76 (77)
T 2e6s_A 22 KKCHSC-SCRVCGGKH--EPNMQLLCDE-CNVAYHIYCLNPPLD--KVPEEEY--WYCPSCKT 76 (77)
T ss_dssp SCCSSS-SCSSSCCCC--CSTTEEECSS-SCCEEETTSSSSCCS--SCCCSSC--CCCTTTCC
T ss_pred eECCCC-CCcCcCCcC--CCCCEEEcCC-CCccccccccCCCcc--CCCCCCC--cCCcCccC
Confidence 444444 788998764 4589999995 999999999999998 79998 7 99999964
No 90
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.17 E-value=1.5e-11 Score=102.25 Aligned_cols=54 Identities=37% Similarity=0.944 Sum_probs=44.3
Q ss_pred CcccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCC-CCccccCcCcc
Q 006754 233 SVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPG-DQGWFCKFCEC 294 (632)
Q Consensus 233 ~~~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~g-d~~W~C~~C~~ 294 (632)
+...+. +|.+|+..+ +++.||+||+ |+++||++||+|||. .+|.| + |||+.|..
T Consensus 14 w~C~~C-~C~~C~~~~--~~~~ll~CD~-C~~~yH~~Cl~Ppl~--~~P~g~~--W~C~~C~~ 68 (70)
T 3asl_A 14 RLCRVC-ACHLCGGRQ--DPDKQLMCDE-CDMAFHIYCLDPPLS--SVPSEDE--WYCPECRN 68 (70)
T ss_dssp SCCTTT-SBTTTCCCS--CGGGEEECTT-TCCEEEGGGSSSCCS--SCCSSSC--CCCTTTSC
T ss_pred eECCCC-CCcCCCCcC--CCCCEEEcCC-CCCceecccCCCCcC--CCCCCCC--cCCcCccC
Confidence 344444 677888754 3588999995 999999999999998 79998 7 99999975
No 91
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.16 E-value=5.2e-12 Score=109.39 Aligned_cols=55 Identities=38% Similarity=0.850 Sum_probs=46.9
Q ss_pred ccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
..++.+|.+|+.++..+++.||+||+ |+.+||++|++||+ +|.|+ |||+.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~-C~~~fH~~Cl~p~~----vP~g~--W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDM-CNLAVHQECYGVPY----IPEGQ--WLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSS-SCCCCCHHHHTCSS----CCSSC--CCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCC-CCchhhcccCCCCc----cCCCc--eECccccCcc
Confidence 35678999999886555679999995 99999999999984 78888 9999997654
No 92
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.13 E-value=2.4e-11 Score=117.49 Aligned_cols=49 Identities=33% Similarity=0.908 Sum_probs=44.1
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
++++|.+|+.+ |+||+||+ |+++||++||+||+. .+|.|+ |+|+.|...
T Consensus 3 ~~~~C~~C~~~-----g~ll~Cd~-C~~~~H~~C~~p~l~--~~p~~~--W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG-----GELLCCEK-CPKVFHLSCHVPTLT--NFPSGE--WICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC-----SSCEECSS-SSCEECTTTSSSCCS--SCCSSC--CCCTTTSCS
T ss_pred CCCccccCCCC-----CeeeecCC-CCcccCccccCCCCC--CCCCCC--EECccccCc
Confidence 56899999976 78999995 999999999999998 799998 999999754
No 93
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.12 E-value=2e-11 Score=120.35 Aligned_cols=52 Identities=37% Similarity=0.837 Sum_probs=45.6
Q ss_pred ccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+.++++|.+|+.+ |+||+||+ |+++||++||+||+. .+|.|+ |+|+.|....
T Consensus 4 d~~~~~C~~C~~~-----g~ll~Cd~-C~~~~H~~Cl~p~l~--~~p~~~--W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG-----GDLLCCEK-CPKVFHLTCHVPTLL--SFPSGD--WICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC-----EEEEECSS-SSCEECTTTSSSCCS--SCCSSC--CCCTTTSCSS
T ss_pred CCCCCCCCCCCCC-----CceEEcCC-CCCccCCccCCCCCC--CCCCCC--EEeCceeCcc
Confidence 3456899999976 78999995 999999999999998 799998 9999997643
No 94
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.12 E-value=1.6e-11 Score=110.69 Aligned_cols=77 Identities=26% Similarity=0.632 Sum_probs=60.3
Q ss_pred hhhcCCCCCCCCCC-----cccCCCCcccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCcc
Q 006754 213 QLDSLSSVGCIEGS-----VIATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGW 287 (632)
Q Consensus 213 ~ld~l~~~~~le~s-----~~~~dg~~~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W 287 (632)
.+...+|..+|... .+....|...+..+|.+|+..+ +++.||+||+ |+++||++||+|||. .+|.|+ |
T Consensus 28 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~--~~~~ll~Cd~-C~~~yH~~Cl~ppl~--~~P~g~--W 100 (114)
T 2kwj_A 28 DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSE--NDDQLLFCDD-CDRGYHMYCLNPPVA--EPPEGS--W 100 (114)
T ss_dssp SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCT--TTTTEEECSS-SCCEEETTTSSSCCS--SCCSSC--C
T ss_pred CCCCccchhhCCChhhhhhccCCCccCccccCccCcccccC--CCCceEEcCC-CCccccccccCCCcc--CCCCCC--e
Confidence 34566777887654 2344567777777888888764 4588999995 999999999999998 799998 9
Q ss_pred ccCcCcchh
Q 006754 288 FCKFCECKM 296 (632)
Q Consensus 288 ~C~~C~~k~ 296 (632)
||+.|....
T Consensus 101 ~C~~C~~~~ 109 (114)
T 2kwj_A 101 SCHLCWELL 109 (114)
T ss_dssp CCHHHHHHH
T ss_pred ECccccchh
Confidence 999997544
No 95
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.11 E-value=1.6e-11 Score=129.09 Aligned_cols=54 Identities=28% Similarity=0.413 Sum_probs=50.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006754 500 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 553 (632)
Q Consensus 500 rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k 553 (632)
++.+..|+..|+..||+.|..++||+..+|++||++|||+++||+|||||||+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~ 419 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 419 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccc
Confidence 345567899999999999999999999999999999999999999999999984
No 96
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.05 E-value=8.1e-11 Score=117.74 Aligned_cols=53 Identities=38% Similarity=0.963 Sum_probs=40.7
Q ss_pred cccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCC-CCccccCcCcc
Q 006754 234 VHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPG-DQGWFCKFCEC 294 (632)
Q Consensus 234 ~~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~g-d~~W~C~~C~~ 294 (632)
.+..+ +|.+|+..+ +++.||+||+ |+++||++||+|||. .+|.| + |||+.|..
T Consensus 171 ~C~~c-~C~vC~~~~--~~~~lL~CD~-C~~~yH~~CL~PPL~--~vP~G~~--W~Cp~C~~ 224 (226)
T 3ask_A 171 LCRVC-ACHLCGGRQ--DPDKQLMCDE-CDMAFHIYCLDPPLS--SVPSEDE--WYCPECRN 224 (226)
T ss_dssp CCTTT-SCSSSCCCC--C--CCEECSS-SCCEECSCC--CCCC--SCCSSSC--CCCGGGC-
T ss_pred ecCCC-CCcCCCCCC--CCCCeEEcCC-CCcceeCccCCCCcc--cCCCCCC--CCCcCCcC
Confidence 33344 799998864 4589999995 999999999999998 79998 7 99999965
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.05 E-value=5.5e-11 Score=106.84 Aligned_cols=76 Identities=25% Similarity=0.680 Sum_probs=57.2
Q ss_pred hhcCCCCCCCCC-----CcccCCCCcccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccc
Q 006754 214 LDSLSSVGCIEG-----SVIATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWF 288 (632)
Q Consensus 214 ld~l~~~~~le~-----s~~~~dg~~~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~ 288 (632)
+...+|..+|.. ..+....|...+..+|.+|+.... +++.||+||+ |+++||++||+|||. .+|.++ ||
T Consensus 32 C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~-~~~~ll~Cd~-C~~~yH~~Cl~p~l~--~~P~~~--W~ 105 (112)
T 3v43_A 32 CGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGK-NADNMLFCDS-CDRGFHMECCDPPLT--RMPKGM--WI 105 (112)
T ss_dssp TCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCC-TTCCCEECTT-TCCEECGGGCSSCCS--SCCSSC--CC
T ss_pred cCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCC-CccceEEcCC-CCCeeecccCCCCCC--CCCCCC--eE
Confidence 344455555532 123456677777888899987532 3578999995 999999999999998 799998 99
Q ss_pred cCcCcch
Q 006754 289 CKFCECK 295 (632)
Q Consensus 289 C~~C~~k 295 (632)
|+.|+.+
T Consensus 106 C~~C~~k 112 (112)
T 3v43_A 106 CQICRPR 112 (112)
T ss_dssp CTTTSCC
T ss_pred CCCCCCc
Confidence 9999753
No 98
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.04 E-value=1.2e-10 Score=98.67 Aligned_cols=55 Identities=38% Similarity=0.934 Sum_probs=43.6
Q ss_pred CcccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcc
Q 006754 233 SVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCEC 294 (632)
Q Consensus 233 ~~~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~ 294 (632)
|..... .|.+|+..+ +++.||+||+ |+++||++||+|||. .+|.++ .|||+.|..
T Consensus 22 W~C~~C-~C~vC~~~~--d~~~ll~CD~-C~~~yH~~Cl~PpL~--~~P~g~-~W~C~~C~~ 76 (77)
T 3shb_A 22 RLCRVC-ACHLCGGRQ--DPDKQLMCDE-CDMAFHIYCLDPPLS--SVPSED-EWYCPECRN 76 (77)
T ss_dssp SCCTTT-SBTTTCCCS--CGGGEEECTT-TCCEEETTTSSSCCS--SCCSSS-CCCCTTTC-
T ss_pred CCCCCC-cCCccCCCC--CCcceeEeCC-CCCccCcccCCCccc--CCCCCC-ceECcCccc
Confidence 444555 677777764 4578999995 999999999999998 799873 599999964
No 99
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.02 E-value=9.1e-11 Score=114.48 Aligned_cols=48 Identities=33% Similarity=0.953 Sum_probs=43.3
Q ss_pred cccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
+++|.+|+.+ |+||+||+ |+++||++|+.||+. .+|.|+ |+|+.|...
T Consensus 2 ~~~C~~C~~~-----g~ll~Cd~-C~~~~H~~Cl~p~l~--~~p~g~--W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP-----GDLVMCNQ-CEFCFHLDCHLPALQ--DVPGEE--WSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC-----SSCCCCTT-TCCBCCSTTSTTCCS--SCCCTT--CCTTTTSCS
T ss_pred CCcCccCCCC-----CceeECCC-CCchhccccCCCCcc--cCCCCC--CCCcCccCC
Confidence 4689999976 78999995 999999999999998 799998 999999764
No 100
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.98 E-value=1.9e-10 Score=96.09 Aligned_cols=55 Identities=24% Similarity=0.614 Sum_probs=45.2
Q ss_pred ccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
..+..+|.+|+..+ ++..||+||+ |+.+||+.|++|++. .+|.+. |||+.|..+.
T Consensus 15 ~~~~~~C~~C~~~~--~~~~mi~CD~-C~~wfH~~Cv~~~~~--~~~~~~--w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPD--DGSPMIGCDD-CDDWYHWPCVGIMAA--PPEEMQ--WFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCC--SSCCEEECSS-SSSEEEHHHHTCSSC--CCSSSC--CCCTTTHHHH
T ss_pred CCCCcCCCCCCCCC--CCCCEEEcCC-CCcccccccCCCCcc--CCCCCC--EEChhccCch
Confidence 45568899999875 3457999995 999999999999987 566677 9999997654
No 101
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.98 E-value=2.5e-10 Score=102.04 Aligned_cols=76 Identities=28% Similarity=0.640 Sum_probs=58.8
Q ss_pred hhhcCCCCCCCCCCcc--cCCCCcccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccC
Q 006754 213 QLDSLSSVGCIEGSVI--ATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCK 290 (632)
Q Consensus 213 ~ld~l~~~~~le~s~~--~~dg~~~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~ 290 (632)
.+...+|..++...+. ....|...+..+|.+|+... ++..||+||+ |+++||++||+|||. .+|.++ |||+
T Consensus 27 ~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~--~~~~ll~Cd~-C~~~yH~~Cl~ppl~--~~P~g~--W~C~ 99 (111)
T 2ysm_A 27 TCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSG--EDSKMLVCDT-CDKGYHTFCLQPVMK--SVPTNG--WKCK 99 (111)
T ss_dssp SSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCS--CCTTEEECSS-SCCEEEGGGSSSCCS--SCCSSC--CCCH
T ss_pred CCCCCcChHHhCCccccccccCccCCcCCcccccCccC--CCCCeeECCC-CCcHHhHHhcCCccc--cCCCCC--cCCc
Confidence 3455677777765443 24567777777888888764 3467999995 999999999999998 799988 9999
Q ss_pred cCcch
Q 006754 291 FCECK 295 (632)
Q Consensus 291 ~C~~k 295 (632)
.|...
T Consensus 100 ~C~~c 104 (111)
T 2ysm_A 100 NCRIC 104 (111)
T ss_dssp HHHCC
T ss_pred CCcCc
Confidence 99654
No 102
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.86 E-value=1.8e-09 Score=95.13 Aligned_cols=56 Identities=27% Similarity=0.660 Sum_probs=43.8
Q ss_pred CCCcccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 231 DGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 231 dg~~~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
+|....+.+.| +|+..+ +++.||+||+ |+.+||+.|++|++. .+|+ . |||+.|..+
T Consensus 21 dg~~~~d~vrC-iC~~~~--~~~~mi~Cd~-C~~w~H~~C~~~~~~--~~p~-~--w~C~~C~~~ 76 (98)
T 2lv9_A 21 DGSYGTDVTRC-ICGFTH--DDGYMICCDK-CSVWQHIDCMGIDRQ--HIPD-T--YLCERCQPR 76 (98)
T ss_dssp TCCCCCCBCCC-TTSCCS--CSSCEEEBTT-TCBEEETTTTTCCTT--SCCS-S--BCCTTTSSS
T ss_pred cCCCCCCCEEe-ECCCcc--CCCcEEEcCC-CCCcCcCcCCCCCcc--CCCC-C--EECCCCcCC
Confidence 34444445667 898875 4588999995 999999999999976 6774 5 999999754
No 103
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.71 E-value=5.9e-09 Score=93.43 Aligned_cols=49 Identities=33% Similarity=0.859 Sum_probs=42.3
Q ss_pred ccccccccccccCCCCCCCCeEEeC--CCCCccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCD--GTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCD--G~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
..++++|.+|+.+ |+||+|| + |+++||+.||+ |. .+|.|+ |||+.|.+.
T Consensus 12 ~~~~~~C~~C~~~-----G~ll~CD~~~-Cp~~fH~~Cl~--L~--~~P~g~--W~Cp~c~C~ 62 (107)
T 4gne_A 12 QMHEDYCFQCGDG-----GELVMCDKKD-CPKAYHLLCLN--LT--QPPYGK--WECPWHQCD 62 (107)
T ss_dssp CSSCSSCTTTCCC-----SEEEECCSTT-CCCEECTGGGT--CS--SCCSSC--CCCGGGBCT
T ss_pred CCCCCCCCcCCCC-----CcEeEECCCC-CCcccccccCc--CC--cCCCCC--EECCCCCCC
Confidence 4567899999964 8999999 6 99999999999 55 799998 999999754
No 104
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.59 E-value=7.8e-09 Score=96.89 Aligned_cols=53 Identities=25% Similarity=0.631 Sum_probs=44.5
Q ss_pred cccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCC---C--CCCCCCccccCcCcchh
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTE---S--IPPGDQGWFCKFCECKM 296 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~---~--iP~gd~~W~C~~C~~k~ 296 (632)
..+++|.+|+.+ |+||+|| .|+++||..||.|||.+. . .|.++ |+|+.|..++
T Consensus 61 g~~d~C~vC~~G-----G~LlcCD-~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~--W~C~~C~~~p 118 (142)
T 2lbm_A 61 GMDEQCRWCAEG-----GNLICCD-FCHNAFCKKCILRNLGRKELSTIMDENNQ--WYCYICHPEP 118 (142)
T ss_dssp SCBCSCSSSCCC-----SSEEECS-SSCCEEEHHHHHHHTCHHHHHHHHTSTTC--CCCTTTCCCT
T ss_pred CCCCeecccCCC-----CcEEeCC-CCCCeeeHhhcCCCCChhhhhhcccCCCC--CEeecccCcc
Confidence 456899999987 8999999 599999999999998621 1 37788 9999998754
No 105
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.59 E-value=5e-08 Score=85.05 Aligned_cols=51 Identities=29% Similarity=0.757 Sum_probs=40.3
Q ss_pred ccccccccccccCCCCCCCCeEEeCCC--CC-ccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~--C~-rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
..+..+| +|+... .+.||+|| . |+ .+||+.|++.+ .+|.+. |||+.|....
T Consensus 33 ~~e~~yC-iC~~~~---~g~MI~CD-~~dC~~~WfH~~CVgl~----~~p~g~--W~Cp~C~~~~ 86 (91)
T 1weu_A 33 PNEPTYC-LCHQVS---YGEMIGCD-NPDCSIEWFHFACVGLT----TKPRGK--WFCPRCSQES 86 (91)
T ss_dssp SCCCBCS-TTCCBC---CSCCCCCS-CSSCSCCCCCSTTTTCS----SCCCSS--CCCTTTCCCC
T ss_pred CCCCcEE-ECCCCC---CCCEeEec-CCCCCCCCEecccCCcC----cCCCCC--EECcCccCcC
Confidence 3456788 999874 47899999 6 66 69999999944 567777 9999997654
No 106
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.54 E-value=5.7e-08 Score=86.67 Aligned_cols=55 Identities=24% Similarity=0.537 Sum_probs=44.5
Q ss_pred cccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 234 VHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 234 ~~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
...++++|.+|+..+ +..+||+|++ |++.||+.||+|++. .+|.+. |+|+.|..-
T Consensus 3 ~~~~~~~C~~C~~~g--~~~~ll~C~~-C~~~~H~~Cl~~~~~--~~~~~~--W~C~~C~~C 57 (111)
T 2ysm_A 3 SGSSGANCAVCDSPG--DLLDQFFCTT-CGQHYHGMCLDIAVT--PLKRAG--WQCPECKVC 57 (111)
T ss_dssp CCCCCSCBTTTCCCC--CTTTSEECSS-SCCEECTTTTTCCCC--TTTSTT--CCCTTTCCC
T ss_pred CCCCCCCCcCCCCCC--CCcCCeECCC-CCCCcChHHhCCccc--cccccC--ccCCcCCcc
Confidence 345678999999874 2256799995 999999999999986 577777 999999643
No 107
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.53 E-value=6.1e-08 Score=80.76 Aligned_cols=51 Identities=29% Similarity=0.756 Sum_probs=40.3
Q ss_pred ccccccccccccCCCCCCCCeEEeCCC--CC-ccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~--C~-rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
..+..+| +|+... .+.||+|| . |+ .+||+.|++. . .+|.+. |||+.|....
T Consensus 13 ~~~~~~C-~C~~~~---~g~MI~CD-~~~C~~~wfH~~Cvgl--~--~~p~g~--w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVS---YGEMIGCD-NPDCSIEWFHFACVGL--T--TKPRGK--WFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCS---CSSEECCS-CSSCSCCCEETTTTTC--S--SCCSSC--CCCTTTSSCS
T ss_pred CCCCCEE-ECCCCC---CCCEeEee-CCCCCCccEecccCCc--C--cCCCCC--EECCCCCccc
Confidence 3456788 799874 37899999 6 77 6999999994 3 577787 9999997643
No 108
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.53 E-value=1.9e-08 Score=81.07 Aligned_cols=49 Identities=31% Similarity=0.804 Sum_probs=38.2
Q ss_pred cccccccccccCCCCCCCCeEEeCCC--CC-ccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCDG~--C~-rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
.+..+| +|+... .+.||+|| . |+ .+||+.|++. . .+|.+. |||+.|..+
T Consensus 8 ~e~~~C-~C~~~~---~g~mi~CD-~cdC~~~wfH~~Cvgl--~--~~p~g~--w~C~~C~~~ 59 (60)
T 2vnf_A 8 NEPTYC-LCHQVS---YGEMIGCD-NPDCSIEWFHFACVGL--T--TKPRGK--WFCPRCSQE 59 (60)
T ss_dssp -CCEET-TTTEEC---CSEEEECS-CTTCSSCEEETGGGTC--S--SCCSSC--CCCHHHHC-
T ss_pred CCCCEE-ECCCcC---CCCEEEeC-CCCCCCceEehhcCCC--C--cCCCCC--EECcCccCc
Confidence 445778 899874 47899999 5 55 7999999994 3 678887 999999754
No 109
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.46 E-value=6.3e-08 Score=84.26 Aligned_cols=48 Identities=29% Similarity=0.757 Sum_probs=37.9
Q ss_pred ccccccccccccCCCCCCCCeEEeCCCCC---ccccccccCCCCCCCCCCCCCCccccCc-Cc
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGTCN---CAFHQKCLDPPLDTESIPPGDQGWFCKF-CE 293 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~C~---rafH~~CL~PPL~~~~iP~gd~~W~C~~-C~ 293 (632)
..+..+| +|+... .+.||+||+ |+ .+||+.|++.+ .+|.+. |||+. |.
T Consensus 23 ~~~~~yC-iC~~~~---~g~MI~CD~-c~C~~eWfH~~CVgl~----~~p~~~--W~Cp~cC~ 74 (90)
T 2jmi_A 23 NQEEVYC-FCRNVS---YGPMVACDN-PACPFEWFHYGCVGLK----QAPKGK--WYCSKDCK 74 (90)
T ss_dssp -CCSCCS-TTTCCC---SSSEECCCS-SSCSCSCEETTTSSCS----SCTTSC--CCSSHHHH
T ss_pred CCCCcEE-EeCCCC---CCCEEEecC-CCCccccCcCccCCCC----cCCCCC--ccCChhhc
Confidence 3455788 899864 368999994 76 89999999954 567777 99999 86
No 110
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.44 E-value=4.3e-08 Score=78.82 Aligned_cols=49 Identities=33% Similarity=0.811 Sum_probs=38.6
Q ss_pred cccccccccccCCCCCCCCeEEeCCC--CC-ccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCDG~--C~-rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
.+..+| +|+..+ .+.||.|| . |+ .+||+.|++.. .+|.+. |||+.|..+
T Consensus 7 ~e~~yC-~C~~~~---~g~mi~CD-~~~C~~~wfH~~Cvgl~----~~p~~~--w~Cp~C~~~ 58 (59)
T 3c6w_A 7 NEPTYC-LCHQVS---YGEMIGCD-NPDCPIEWFHFACVDLT----TKPKGK--WFCPRCVQE 58 (59)
T ss_dssp -CCEET-TTTEEC---CSEEEECS-CTTCSSCEEETGGGTCS----SCCSSC--CCCHHHHCC
T ss_pred CCCcEE-ECCCCC---CCCeeEee-CCCCCCCCEecccCCcc----cCCCCC--EECcCccCc
Confidence 345778 899874 47899999 6 66 69999999943 577787 999999654
No 111
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.38 E-value=7.1e-08 Score=78.35 Aligned_cols=49 Identities=27% Similarity=0.677 Sum_probs=38.3
Q ss_pred cccccccccccCCCCCCCCeEEeCCCCC---ccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCDGTCN---CAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCDG~C~---rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
.+..+| +|+... .+.||.|| .|+ .+||+.|++.. .+|.+. |||+.|..+
T Consensus 9 ~e~~yC-~C~~~~---~g~MI~CD-~c~C~~~WfH~~Cvgl~----~~p~~~--w~Cp~C~~~ 60 (62)
T 2g6q_A 9 NEPTYC-LCNQVS---YGEMIGCD-NEQCPIEWFHFSCVSLT----YKPKGK--WYCPKCRGD 60 (62)
T ss_dssp -CCEET-TTTEEC---CSEEEECS-CTTCSSCEEETGGGTCS----SCCSSC--CCCHHHHTC
T ss_pred CCCcEE-ECCCCC---CCCeeeee-CCCCCcccEecccCCcC----cCCCCC--EECcCcccC
Confidence 345778 899873 37899999 554 89999999954 467777 999999754
No 112
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.28 E-value=7.1e-08 Score=89.05 Aligned_cols=55 Identities=25% Similarity=0.636 Sum_probs=44.1
Q ss_pred ccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCC---CC--CCCCCccccCcCcchhh
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTE---SI--PPGDQGWFCKFCECKME 297 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~---~i--P~gd~~W~C~~C~~k~~ 297 (632)
+..+.+|.+|+.+ |+||+|| .|+++||..|+.|++.+. .+ |.+. |+|..|..++.
T Consensus 54 Dg~~~~C~vC~dG-----G~LlcCd-~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~--W~C~~C~~~pl 113 (129)
T 3ql9_A 54 DGMDEQCRWCAEG-----GNLICCD-FCHNAFCKKCILRNLGRRELSTIMDENNQ--WYCYICHPEPL 113 (129)
T ss_dssp TSCBSSCTTTCCC-----SEEEECS-SSSCEEEHHHHHHHTCHHHHHHHTCTTSC--CCCTTTCCGGG
T ss_pred CCCCCcCeecCCC-----CeeEecC-CCchhhhHHHhCCCcchhHHHHhccCCCC--eEcCCcCCHHH
Confidence 3456789999976 8999999 599999999999986421 23 6676 99999988753
No 113
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.19 E-value=4.5e-07 Score=73.29 Aligned_cols=55 Identities=25% Similarity=0.456 Sum_probs=41.6
Q ss_pred cccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCC-CCCCccccCcCcchh
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIP-PGDQGWFCKFCECKM 296 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP-~gd~~W~C~~C~~k~ 296 (632)
.+..+|.+|+.... +++.||.|| .|..+||..|++.+.. .+. ... |+|+.|..+.
T Consensus 4 ~e~~~C~~C~~~~~-~~~~mI~Cd-~C~~WfH~~Cvgl~~~--~~~~~~~--~~C~~C~~k~ 59 (64)
T 1we9_A 4 GSSGQCGACGESYA-ADEFWICCD-LCEMWFHGKCVKITPA--RAEHIKQ--YKCPSCSNKS 59 (64)
T ss_dssp SSCCCCSSSCCCCC-SSSCEEECS-SSCCEEETTTTTCCTT--GGGGCSS--CCCHHHHTTT
T ss_pred CCCCCCCCCCCccC-CCCCEEEcc-CCCCCCCccccCcChh--HhcCCCc--EECCCCcCcC
Confidence 45678999998752 347899999 5999999999997644 221 134 9999997654
No 114
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=3.9e-07 Score=75.65 Aligned_cols=51 Identities=27% Similarity=0.681 Sum_probs=39.4
Q ss_pred cccccccccccCCCCCCCCeEEeCCCCC---ccccccccCCCCCCCCCCCCCCccccCcCcchhh
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCDGTCN---CAFHQKCLDPPLDTESIPPGDQGWFCKFCECKME 297 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCDG~C~---rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~~ 297 (632)
.+..+|. |+..+ .+.||.||+ |+ .+||+.|++.. ..|.+. |||+.|.....
T Consensus 4 ~~~~yC~-C~~~~---~g~MI~CD~-cdC~~~WfH~~Cvgl~----~~p~~~--w~Cp~C~~~~~ 57 (70)
T 1x4i_A 4 GSSGYCI-CNQVS---YGEMVGCDN-QDCPIEWFHYGCVGLT----EAPKGK--WYCPQCTAAMK 57 (70)
T ss_dssp SCCCCST-TSCCC---CSSEECCSC-TTCSCCCEEHHHHTCS----SCCSSC--CCCHHHHHHHH
T ss_pred CCCeEEE-cCCCC---CCCEeEeCC-CCCCccCCcccccccC----cCCCCC--EECCCCCcccc
Confidence 3456785 98873 479999995 75 79999999954 456777 99999976653
No 115
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.08 E-value=5e-07 Score=66.33 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.1
Q ss_pred chhhhccchhccHHHHhhhh
Q 006754 541 EKVNKWFKNARYLALKARKV 560 (632)
Q Consensus 541 ~qV~iWFqNrR~k~~K~~k~ 560 (632)
+||+|||||||+|.+|....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 59999999999966665544
No 116
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=98.07 E-value=2.1e-06 Score=70.55 Aligned_cols=56 Identities=20% Similarity=0.643 Sum_probs=39.0
Q ss_pred ccccccccccccCCCCCCCCeEEeCC-CCCccccccccCCCCCC---CCCCCCCCccccCcCcchh
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDG-TCNCAFHQKCLDPPLDT---ESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG-~C~rafH~~CL~PPL~~---~~iP~gd~~W~C~~C~~k~ 296 (632)
+.+..+| +|+... +++.||.||+ .|..+||..|++.+-.+ ..+|+ .|||+.|+..+
T Consensus 7 ~e~~v~C-~C~~~~--~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~---~~~C~~Cr~~r 66 (68)
T 2rsd_A 7 PEAKVRC-ICSSTM--VNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPP---VFYCELCRLSR 66 (68)
T ss_dssp SSCEECC-TTCCCS--CCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCS---SCCCHHHHHHH
T ss_pred CCCCEEe-ECCCCc--CCCCEEEECCCCCCCeEchhhCCCCcccccccCCCC---cEECcCccCcc
Confidence 3444667 798764 3588999993 49999999999864321 12332 39999997643
No 117
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.01 E-value=2.4e-06 Score=70.86 Aligned_cols=52 Identities=23% Similarity=0.638 Sum_probs=38.9
Q ss_pred cccccccccccCCCCCCC-CeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 236 HEHIICAKCKLREAFPDN-DIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g-~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
.+..+| +|+... +++ .||.|| .|..+||..|++..... .+| .. |+|+.|..+
T Consensus 14 ~~~~~C-~C~~~~--~~g~~mI~Cd-~C~~W~H~~Cvg~~~~~-~~~-~~--~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKD--DDGERMLACD-GCGVWHHTRCIGINNAD-ALP-SK--FLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCS--CCSSCEEECS-SSCEEEETTTTTCCTTS-CCC-SC--CCCHHHHHH
T ss_pred CcceEe-eCCCcc--CCCCcEEECC-CCCCccCCeeeccCccc-cCC-Cc--EECCCccCC
Confidence 345788 699874 234 699999 59999999999987532 344 44 999999754
No 118
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.00 E-value=2.7e-06 Score=70.18 Aligned_cols=51 Identities=18% Similarity=0.514 Sum_probs=39.7
Q ss_pred ccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcc
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCEC 294 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~ 294 (632)
..+..+| +|+..+ +++.||.|| .|..+||..|++.+.. .+| +. |+|+.|..
T Consensus 16 ~~~~~~C-iC~~~~--~~~~MIqCd-~C~~WfH~~Cvgi~~~--~~~-~~--~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPF--AGRPMIECN-ECHTWIHLSCAKIRKS--NVP-EV--FVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCC--TTCCEEECT-TTCCEEETTTTTCCTT--SCC-SS--CCCHHHHT
T ss_pred CCCceEe-ECCCcC--CCCCEEECC-CCCccccccccCcCcc--cCC-Cc--EECCCCCC
Confidence 4455788 999875 345799999 5999999999998754 455 34 99999963
No 119
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.95 E-value=7e-07 Score=85.16 Aligned_cols=55 Identities=20% Similarity=0.520 Sum_probs=39.9
Q ss_pred cccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
.+..+| +|+.+.. +++.||+|| .|+.+||..|++.+... ..+.+. |+|+.|....
T Consensus 6 ~~~~~C-~C~~~~~-~~~~mi~Cd-~C~~WfH~~Cv~~~~~~-~~~~~~--~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPED-ESKFYIGCD-RCQNWYHGRCVGILQSE-AELIDE--YVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECC-TTSCEEECT-TTCCEEEHHHHTCCHHH-HTTCSS--CCCHHHHHHH
T ss_pred CCCcEe-eCCCCCC-CCCCEeECC-CCCchhChhhcCCchhh-ccCccC--eecCCCcchh
Confidence 345789 9998742 357799999 59999999999865331 112344 9999998755
No 120
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.92 E-value=3.3e-06 Score=71.20 Aligned_cols=57 Identities=19% Similarity=0.546 Sum_probs=40.4
Q ss_pred cccccccccccCCCCCCCCeEEeC--CCCCccccccccCCCCCCCC-CCCCCCccccCcCcchh
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCD--GTCNCAFHQKCLDPPLDTES-IPPGDQGWFCKFCECKM 296 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCD--G~C~rafH~~CL~PPL~~~~-iP~gd~~W~C~~C~~k~ 296 (632)
.+..+| +|+..+ +.+.||.|| . |..+||..|++.+-.+.. .+.....|||+.|...+
T Consensus 14 ~~~~~C-iC~~~~--~~g~MI~CD~~~-C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSL--ETDSMIQCEDPR-CHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCC--CCSCEEECSSTT-TCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcC--CCCCEEEECCcc-CCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 455778 899974 458999999 7 999999999997654210 01111249999997643
No 121
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.86 E-value=2.2e-06 Score=77.08 Aligned_cols=55 Identities=24% Similarity=0.514 Sum_probs=40.4
Q ss_pred ccccccccCCC-----CCCCCeEEeCCCCCccccccccCCCCCC-CCCCCCCCccccCcCcchh
Q 006754 239 IICAKCKLREA-----FPDNDIVLCDGTCNCAFHQKCLDPPLDT-ESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 239 ~~C~vC~~~~~-----~~~g~lLlCDG~C~rafH~~CL~PPL~~-~~iP~gd~~W~C~~C~~k~ 296 (632)
.+|.+|..+.. .+.++||+|++ |++.||+.||++++.. ..+|.+. |+|+.|....
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~-C~~~~H~~Cl~~~~~~~~~~~~~~--W~C~~C~~C~ 62 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCAD-CGRSGHPTCLQFTLNMTEAVKTYK--WQCIECKSCI 62 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSS-SCCEECTTTTTCCHHHHHHHHHTT--CCCGGGCCCT
T ss_pred CcCccCCCCccccccCCCCCCCeEeCC-CCCccchhhCCChhhhhhccCCCc--cCccccCccC
Confidence 57999987642 13468999995 9999999999987421 1356677 9999995433
No 122
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.81 E-value=2e-06 Score=71.89 Aligned_cols=53 Identities=21% Similarity=0.561 Sum_probs=37.8
Q ss_pred cccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCC-C--CCCCCccccCcCcchh
Q 006754 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTES-I--PPGDQGWFCKFCECKM 296 (632)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~-i--P~gd~~W~C~~C~~k~ 296 (632)
..+| +|+..+ +++.||.|| .|..+||..|++....... + +... |+|+.|....
T Consensus 16 ~~~C-~C~~~~--~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~--~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPH--NNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGED--YICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCC--CSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCC--CCCHHHHHHS
T ss_pred CCEE-ECCCcc--CCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCe--EECcCCcCcc
Confidence 4677 899875 346899999 5999999999996532100 0 1234 9999997543
No 123
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.73 E-value=7.4e-06 Score=69.05 Aligned_cols=54 Identities=19% Similarity=0.433 Sum_probs=38.6
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+..+| +|+.... +++.||.|| .|..+||..|++........+ . .|+|+.|....
T Consensus 11 ~~~~C-~C~~~~d-~~~~MIqCd-~C~~WfH~~Cvgl~~~~~~~~-~--~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYN-VNHFMIECG-LCQDWFHGSCVGIEEENAVDI-D--IYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCC-SSSCEEEBT-TTCCEEEHHHHTCCHHHHTTC-S--BBCCTTTTTTS
T ss_pred CccEE-EcCCccC-CCCceEEcC-CCCCcEEeeecCcccccccCC-C--eEECCCccccc
Confidence 34567 9998752 257899999 599999999999654311111 3 49999997643
No 124
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.67 E-value=8.5e-06 Score=72.53 Aligned_cols=56 Identities=25% Similarity=0.593 Sum_probs=40.6
Q ss_pred cccccccccCCCCCCCCeEEeC-CCCCccccccccCCCCCCC-C---CCCCCCccccCcCcchhh
Q 006754 238 HIICAKCKLREAFPDNDIVLCD-GTCNCAFHQKCLDPPLDTE-S---IPPGDQGWFCKFCECKME 297 (632)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lLlCD-G~C~rafH~~CL~PPL~~~-~---iP~gd~~W~C~~C~~k~~ 297 (632)
...|.+|+.... +++.||.|| + |..+||..|++...... . .|.+. |+|+.|.....
T Consensus 3 ~~~C~iC~~p~~-~~~~mi~Cdd~-C~~WfH~~CVglt~~~~~~i~~~~~~~--~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVN-DDQDAILCEAS-CQKWFHRECTGMTESAYGLLTTEASAV--WACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCC-TTSCEEECTTT-TCCEEEGGGTTCCHHHHHHHHHCTTEE--ECCHHHHHTTT
T ss_pred cCCCCCCCCccC-CCCCEEEecCC-cccccccccCCcCHHHHHhhccCCCCC--EECccccCcCC
Confidence 468999999853 346799997 6 99999999999653100 0 24444 99999987653
No 125
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.66 E-value=3e-06 Score=69.38 Aligned_cols=54 Identities=24% Similarity=0.543 Sum_probs=38.3
Q ss_pred cccccccccccCCCCCCCCeEEeC-CCCCccccccccCCCCCCC----CCCCCCCccccCcCc
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCD-GTCNCAFHQKCLDPPLDTE----SIPPGDQGWFCKFCE 293 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCD-G~C~rafH~~CL~PPL~~~----~iP~gd~~W~C~~C~ 293 (632)
.....|.+|+.+.. ++..||.|| + |..+||..|++...... .-|.+. |+|+.|.
T Consensus 6 ~~~~~C~~C~~p~~-~~~~mI~CD~~-C~~WfH~~Cvglt~~~~~~l~~e~~~~--w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVN-DDQDAILCEAS-CQKWFHRICTGMTETAYGLLTAEASAV--WGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCC-TTSCEEEBTTT-TCCEEEHHHHTCCHHHHHHHHHCTTEE--ECCHHHH
T ss_pred CCcCcCccCCCccC-CCCCeEecccC-ccccCchhccCCCHHHHHHhhccCCCc--EECcCcc
Confidence 34578999999753 356799999 7 99999999999653200 014444 9999995
No 126
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.62 E-value=5e-06 Score=74.49 Aligned_cols=56 Identities=21% Similarity=0.462 Sum_probs=40.4
Q ss_pred cccccccccCCC----CCCCCeEEeCCCCCccccccccCC--CCCCCCCCCCCCccccCcCcchhh
Q 006754 238 HIICAKCKLREA----FPDNDIVLCDGTCNCAFHQKCLDP--PLDTESIPPGDQGWFCKFCECKME 297 (632)
Q Consensus 238 ~~~C~vC~~~~~----~~~g~lLlCDG~C~rafH~~CL~P--PL~~~~iP~gd~~W~C~~C~~k~~ 297 (632)
..+|.+|.+.+. ...++||.|++ |++.||++||++ ++. ..++.+. |+|+.|.....
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~-C~~~~H~~Cl~~~~~~~-~~~~~~~--W~C~~C~~C~v 66 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCAD-CGNSGHPSCLKFSPELT-VRVKALR--WQCIECKTCSS 66 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTT-TCCEECHHHHTCCHHHH-HHHHTSC--CCCTTTCCBTT
T ss_pred CccccccCCchhhCcCCCchhceEhhh-cCCCCCCchhcCCHHHH-HHhhccc--cccccCCcccc
Confidence 467889977531 13468999995 999999999975 222 1466777 99999965443
No 127
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.59 E-value=1.1e-05 Score=67.36 Aligned_cols=53 Identities=25% Similarity=0.558 Sum_probs=37.9
Q ss_pred cccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
..+| +|+.... +++.||.|| .|..+||..|++.... .++.. ..|+|+.|....
T Consensus 10 ~~yC-iC~~~~~-~~~~MI~Cd-~C~~WfH~~Cvg~~~~--~~~~~-~~~~C~~C~~~~ 62 (75)
T 3kqi_A 10 PVYC-VCRLPYD-VTRFMIECD-ACKDWFHGSCVGVEEE--EAPDI-DIYHCPNCEKTH 62 (75)
T ss_dssp CEET-TTTEECC-TTSCEEECT-TTCCEEEHHHHTCCTT--TGGGB-SSCCCHHHHHHH
T ss_pred eeEE-ECCCcCC-CCCCEEEcC-CCCCCEeccccccccc--ccCCC-CEEECCCCcccC
Confidence 3455 8988642 357899999 5999999999997643 23321 239999997643
No 128
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.56 E-value=1.2e-05 Score=62.63 Aligned_cols=48 Identities=29% Similarity=0.616 Sum_probs=35.0
Q ss_pred cccccccCCCCCCCCeEEeC-CCCCccccccccCCCCCCCCCCCCCCccccCcCc
Q 006754 240 ICAKCKLREAFPDNDIVLCD-GTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCE 293 (632)
Q Consensus 240 ~C~vC~~~~~~~~g~lLlCD-G~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~ 293 (632)
.|.+|+.+.. ++..||.|| + |..+||..|++.... ...... |+|+.|.
T Consensus 4 ~cc~C~~p~~-~~~~mI~Cd~~-C~~WfH~~Cvgl~~~--~~~~~~--~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCK-DKVDWVQCDGG-CDEWFHQVCVGVSPE--MAENED--YICINCA 52 (52)
T ss_dssp SCTTCCCCCC-TTCCEEECTTT-TCCEEETTTTTCCHH--HHHHSC--CCCSCC-
T ss_pred cCCCCcCccC-CCCcEEEeCCC-CCccCcccccCCCcc--ccCCCC--EECCCCC
Confidence 4778888752 346799999 6 999999999996533 111244 9999994
No 129
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.45 E-value=3.9e-05 Score=59.75 Aligned_cols=46 Identities=20% Similarity=0.604 Sum_probs=35.5
Q ss_pred ccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCc
Q 006754 239 IICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCE 293 (632)
Q Consensus 239 ~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~ 293 (632)
.+| +|+..+ +++.||.|| .|..+||..|++.+.. .+| +. |+|+.|.
T Consensus 5 ~~C-~C~~~~--~~~~MI~Cd-~C~~W~H~~Cvgi~~~--~~~-~~--~~C~~C~ 50 (52)
T 3o7a_A 5 VTC-FCMKPF--AGRPMIECN-ECHTWIHLSCAKIRKS--NVP-EV--FVCQKCR 50 (52)
T ss_dssp BCS-TTCCBC--TTCCEEECT-TTCCEEETTTTTCCGG--GCC-SS--CCCHHHH
T ss_pred eEE-EeCCcC--CCCCEEEcC-CCCccccccccCCCcc--cCC-Cc--EECcCCC
Confidence 344 688764 356899999 5999999999997754 455 34 9999995
No 130
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.40 E-value=4.8e-05 Score=65.15 Aligned_cols=56 Identities=21% Similarity=0.711 Sum_probs=40.3
Q ss_pred ccccccccccccCCCCCCCCeEEeCCCCCccccccccCCC--------CCCCCCCCCCCccccCcCcc
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPP--------LDTESIPPGDQGWFCKFCEC 294 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PP--------L~~~~iP~gd~~W~C~~C~~ 294 (632)
...+..|.||.... .+.|+-|. .|.+.||..||.++ +.....-..+.+|.|+.|..
T Consensus 12 ~~~D~~C~VC~~~t---~~~l~pCR-vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 12 VVNDEMCDVCEVWT---AESLFPCR-VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCSCCCTTTCCCC---SSCCSSCS-SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCcccCcccccc---ccceeccc-cccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 34678999999864 47899999 79999999999986 11001112234699999943
No 131
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=97.29 E-value=0.00012 Score=71.27 Aligned_cols=56 Identities=20% Similarity=0.476 Sum_probs=38.7
Q ss_pred ccccccccCCCCCC--CCeEEeCCCCCccccccccCCCCCC----CCCCCCCCccccCcCcchh
Q 006754 239 IICAKCKLREAFPD--NDIVLCDGTCNCAFHQKCLDPPLDT----ESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 239 ~~C~vC~~~~~~~~--g~lLlCDG~C~rafH~~CL~PPL~~----~~iP~gd~~W~C~~C~~k~ 296 (632)
.+|.+|+.....++ ..||.||+ |..+||..|++..-.. ..+|+. ..|+|+.|....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~-C~~W~H~~Cvgi~~~~~e~~~~~pe~-~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGK-CDRWVHSKCENLSDEMYEILSNLPES-VAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTT-TCCEEEGGGSSCCHHHHHHHHHSHHH-HCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCC-CCcccchhccccCHHHHHHhhcCCCC-CeeECcCCCCCC
Confidence 57999999864322 35999995 9999999999864210 012321 139999998754
No 132
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.05 E-value=0.0002 Score=79.42 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=29.6
Q ss_pred CCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 252 DNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 252 ~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
+..||.||+ |..+||..|++..-.. .-..+ .|+||.|...
T Consensus 55 ~~~mI~CD~-C~~WfH~~CVgi~~~~-a~~~~--~y~Cp~C~~~ 94 (528)
T 3pur_A 55 DFQWIGCDS-CQTWYHFLCSGLEQFE-YYLYE--KFFCPKCVPH 94 (528)
T ss_dssp TTSEEECTT-TCCEEEGGGTTCCGGG-TTTEE--ECCCTTTHHH
T ss_pred CCCEEECCC-CCcCCCCcCCCCChhH-hcCCC--eEECcCCcCC
Confidence 457999995 9999999999966431 11113 4999999764
No 133
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.87 E-value=0.00011 Score=81.21 Aligned_cols=54 Identities=19% Similarity=0.429 Sum_probs=38.1
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+..+| +|+..+. +++.||.|| .|..+||..|++..-. .... ...|+|+.|....
T Consensus 36 ~~~yC-~C~~~~d-~~~~MIqCd-~C~~WfH~~Cvgl~~~--~~~~-~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 36 PPVYC-VCRQPYD-VNRFMIECD-ICKDWFHGSCVGVEEH--HAVD-IDLYHCPNCAVLH 89 (488)
T ss_dssp CCEET-TTTEECC-TTSCEEEBT-TTCCEEEHHHHTCCGG--GGGG-EEEBCCHHHHHHH
T ss_pred CCeEE-eCCCcCC-CCCCeEEcc-CCCCceeeeecCcCcc--cccC-CCEEECCCCcCCc
Confidence 34556 9998642 257899999 5999999999996533 1211 1249999997654
No 134
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=96.19 E-value=0.00038 Score=76.15 Aligned_cols=52 Identities=21% Similarity=0.458 Sum_probs=37.0
Q ss_pred cccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 240 ICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 240 ~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
.+++|+.... +++.||.|| .|..+||..|++.+-. ..+. ...|+|+.|....
T Consensus 6 ~yCiC~~~~d-~~~~MIqCD-~C~~WfH~~CVgi~~~--~~~~-~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 6 VYCLCRLPYD-VTRFMIECD-MCQDWFHGSCVGVEEE--KAAD-IDLYHCPNCEVLH 57 (447)
T ss_dssp EETTTTEECC-TTSCEEECT-TTCCEEEHHHHTCCHH--HHTT-EEECCCHHHHHHH
T ss_pred eEEeCCCcCC-CCCCeEEcC-CCCcccccccCCcCcc--cccC-CCEEECCCCcccc
Confidence 4558988742 358899999 5999999999996533 1111 1249999997654
No 135
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.39 E-value=0.0052 Score=54.72 Aligned_cols=40 Identities=23% Similarity=0.539 Sum_probs=29.1
Q ss_pred CCeEEeCCCCCccccccccCCCCCCCCCCCCC--CccccCcCcch
Q 006754 253 NDIVLCDGTCNCAFHQKCLDPPLDTESIPPGD--QGWFCKFCECK 295 (632)
Q Consensus 253 g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd--~~W~C~~C~~k 295 (632)
..||.|+ .|..+||..|++++.. .++..+ +.|+|+.|...
T Consensus 73 ~~m~~C~-~C~~~~H~~C~~~~~~--~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 73 KKLMECC-ICNEIVHPGCLQMDGE--GLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GSCEEET-TTCCEECGGGCCSCCC--CEECSSSSSEEECTTTC--
T ss_pred cceEEee-ecCCeEECCCCCCCcc--ccccccCCCCeECCCCcCC
Confidence 4599999 6999999999998754 233221 34999999764
No 136
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=93.90 E-value=0.037 Score=49.42 Aligned_cols=59 Identities=14% Similarity=0.295 Sum_probs=38.3
Q ss_pred hhcCCCCCCCCCCcccCCCCccccccccc-----ccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccc
Q 006754 214 LDSLSSVGCIEGSVIATDGSVHHEHIICA-----KCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWF 288 (632)
Q Consensus 214 ld~l~~~~~le~s~~~~dg~~~~e~~~C~-----vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~ 288 (632)
++...|..++.-..+ +...|+|. +|+.. ..+.|. .|+.+||..|+.+.|. ..|.+. |+
T Consensus 35 Cp~~fH~~Cl~L~~~------P~g~W~Cp~c~C~~C~k~------~~~~C~-~Cp~sfC~~c~~g~l~--~~~~~~--~~ 97 (107)
T 4gne_A 35 CPKAYHLLCLNLTQP------PYGKWECPWHQCDECSSA------AVSFCE-FCPHSFCKDHEKGALV--PSALEG--RL 97 (107)
T ss_dssp CCCEECTGGGTCSSC------CSSCCCCGGGBCTTTCSB------CCEECS-SSSCEECTTTCTTSCE--ECTTTT--CE
T ss_pred CCcccccccCcCCcC------CCCCEECCCCCCCcCCCC------CCcCcC-CCCcchhhhccCCcce--ecCCCC--ce
Confidence 344556666653222 22345555 44443 238899 6999999999999997 455444 99
Q ss_pred c
Q 006754 289 C 289 (632)
Q Consensus 289 C 289 (632)
|
T Consensus 98 c 98 (107)
T 4gne_A 98 C 98 (107)
T ss_dssp E
T ss_pred e
Confidence 8
No 137
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=93.84 E-value=0.012 Score=52.36 Aligned_cols=41 Identities=20% Similarity=0.548 Sum_probs=28.5
Q ss_pred CeEEeCCCCCccccccccCCCCC----CCCCCCCCCccccCcCcchh
Q 006754 254 DIVLCDGTCNCAFHQKCLDPPLD----TESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 254 ~lLlCDG~C~rafH~~CL~PPL~----~~~iP~gd~~W~C~~C~~k~ 296 (632)
.||.|| .|..+||..|.+..-. ...+|.. ..|.|+.|....
T Consensus 1 ~mi~c~-~c~~w~H~~c~~~~~~~~~~l~~lp~~-~~~~c~~C~~~~ 45 (140)
T 2ku7_A 1 SMMQCG-KCDRWVHSKCENLSDEMYEILSNLPES-VAYTCVNCTERH 45 (140)
T ss_dssp CCCCCS-CCSSCHHHHHCCCCHHHHHHHHSSCTT-TTCCSSCCTTTS
T ss_pred Cccccc-cCCCccCCcccccCHHHHHHHhhcccc-ceeeCccccccc
Confidence 389999 5999999999885420 0145532 249999997543
No 138
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.05 E-value=0.054 Score=44.91 Aligned_cols=47 Identities=21% Similarity=0.378 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchh
Q 006754 504 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNA 550 (632)
Q Consensus 504 ~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNr 550 (632)
...++.-.+.|+++|..++.+....-..|..+.+|+..||+-||--+
T Consensus 11 ~~~~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 11 IPPPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 34456667899999999999999999999999999999999999644
No 139
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=86.90 E-value=0.085 Score=50.19 Aligned_cols=55 Identities=20% Similarity=0.547 Sum_probs=39.9
Q ss_pred ccccccccccCCCCCCCCeEEeCC-CCCccccccccCCCCCCCCCC--CCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDG-TCNCAFHQKCLDPPLDTESIP--PGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG-~C~rafH~~CL~PPL~~~~iP--~gd~~W~C~~C~~k~ 296 (632)
.+.+|.+|+.+ +.||+||. .|.+.|=..|+.--+.+..+- .....|.|-.|...+
T Consensus 78 ~~~yC~wC~~G-----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 78 YQSYCTICCGG-----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp SBSSCTTTSCC-----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred CcceeeEecCC-----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 35789999976 89999992 399999999987655421111 112459999998765
No 140
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=82.88 E-value=0.67 Score=34.73 Aligned_cols=48 Identities=23% Similarity=0.524 Sum_probs=32.9
Q ss_pred cccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
...|.+|...-. .+..++..- .|...||..|+...+. .. ..||.|+..
T Consensus 5 ~~~C~IC~~~~~-~~~~~~~~~-~C~H~f~~~Ci~~w~~------~~--~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELE-DGEEARFLP-RCGHGFHAECVDMWLG------SH--STCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCC-TTSCCEECS-SSCCEECTTHHHHTTT------TC--CSCSSSCCC
T ss_pred CCcCccCCcccc-CCCceEECC-CCCCcccHHHHHHHHH------cC--CcCcCCCCE
Confidence 467999987642 122344444 3999999999997765 12 579999764
No 141
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=82.37 E-value=0.19 Score=53.96 Aligned_cols=54 Identities=17% Similarity=0.539 Sum_probs=39.9
Q ss_pred ccccccccccCCCCCCCCeEEeC--CCCCccccccccCCCCCCCCCC--CCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCD--GTCNCAFHQKCLDPPLDTESIP--PGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCD--G~C~rafH~~CL~PPL~~~~iP--~gd~~W~C~~C~~k~ 296 (632)
.+.+|..|+.+ +.+|+|| . |.++|-..|+.--+.+..+- .....|.|-.|...+
T Consensus 92 ~~~yCr~C~~G-----g~l~~Cdn~~-C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 92 YQSYCSICCSG-----ETLLICGNPD-CTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SBCSCTTTCCC-----SSCEECCSTT-CCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CcccceEcCCC-----CeEEEeCCCC-CCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 46789999876 8999999 6 99999999998665321111 012359999998765
No 142
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=81.74 E-value=1.1 Score=43.42 Aligned_cols=50 Identities=12% Similarity=0.303 Sum_probs=32.8
Q ss_pred ccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCC-CCCCccccCcCcch
Q 006754 243 KCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIP-PGDQGWFCKFCECK 295 (632)
Q Consensus 243 vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP-~gd~~W~C~~C~~k 295 (632)
-|+.... -.-.||.|+ .|.++||..|+..+..+ -+| .......|..|...
T Consensus 9 YCG~~~~-~~~~mLqC~-~C~qWFH~~Cl~~~~~~-~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 9 DEENGRQ-LGEVELQCG-ICTKWFTADTFGIDTSS-CLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp --CTTCC-TTSCEEECT-TTCCEEEGGGGTCCCTT-CCTTCCSEEEECTTTSTT
T ss_pred EcCCCCC-CCceeEeec-cccceecHHHhcccccC-ccccceeEEEEccccCCC
Confidence 4665421 234599999 59999999999876543 344 22335679999764
No 143
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=79.62 E-value=0.43 Score=40.24 Aligned_cols=49 Identities=22% Similarity=0.534 Sum_probs=33.4
Q ss_pred cccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
.+...|.+|..... .+..+..- .|...||..|+...+.. . -.||.|+..
T Consensus 38 ~~~~~C~IC~~~~~--~~~~~~~l-~C~H~Fh~~Ci~~wl~~------~--~~CP~Cr~~ 86 (91)
T 2l0b_A 38 GQEMCCPICCSEYV--KGDVATEL-PCHHYFHKPCVSIWLQK------S--GTCPVCRCM 86 (91)
T ss_dssp SSCSEETTTTEECC--TTCEEEEE-TTTEEEEHHHHHHHHTT------T--CBCTTTCCB
T ss_pred CCCCCCcccChhhc--CCCcEEec-CCCChHHHHHHHHHHHc------C--CcCcCcCcc
Confidence 34578999986532 23433333 39999999999987651 2 479999764
No 144
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.23 E-value=0.58 Score=39.16 Aligned_cols=52 Identities=21% Similarity=0.615 Sum_probs=33.9
Q ss_pred cccccccccccCCCCCCCCeEE-eCCCC---CccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 236 HEHIICAKCKLREAFPDNDIVL-CDGTC---NCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLl-CDG~C---~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
.+...|.+|..... .++.||+ |. | -..||..|+...|.. .+. ..||.|....
T Consensus 13 ~~~~~C~IC~~~~~-~~~~l~~pC~--C~Gs~h~fH~~Cl~~Wl~~----~~~--~~CplCr~~~ 68 (80)
T 2d8s_A 13 SSQDICRICHCEGD-DESPLITPCH--CTGSLHFVHQACLQQWIKS----SDT--RCCELCKYEF 68 (80)
T ss_dssp TTSCCCSSSCCCCC-SSSCEECSSS--CCSSSCCEETTHHHHHHHH----HCC--SBCSSSCCBC
T ss_pred CCCCCCeEcCcccc-CCCeeEeccc--cCCcCCeeCHHHHHHHHhh----CCC--CCCCCCCCee
Confidence 34578999986532 2344553 32 4 389999999977652 122 5899997654
No 145
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=78.21 E-value=1.5 Score=46.71 Aligned_cols=59 Identities=25% Similarity=0.560 Sum_probs=36.2
Q ss_pred ccccccccccccCCCCCCCC--eEEeCC-CCCccccccccCCCCCCCCCCCC-----CCccccCcCcchh
Q 006754 235 HHEHIICAKCKLREAFPDND--IVLCDG-TCNCAFHQKCLDPPLDTESIPPG-----DQGWFCKFCECKM 296 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~--lLlCDG-~C~rafH~~CL~PPL~~~~iP~g-----d~~W~C~~C~~k~ 296 (632)
......|.+|...-. +++. -..|+. .|...||..|+...+. ..+.. -..=-||.|+.+.
T Consensus 305 ee~~~ECaICys~~l-~~g~lPdk~C~n~~C~h~FH~~CL~kWLr--s~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 305 DNEELRCNICFAYRL-DGGEVPLVSCDNAKCVLKCHAVCLEEWFK--TLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CCSCCSCSSSCCSSC-TTCCCCCBCCSCTTCCCCBCSGGGHHHHH--HHHSSSCTTTCCEEECTTTCCEE
T ss_pred ccCCccCcccceeec-CCCCCccccccCCccCCccchHHHHHHHH--hCCCccccccccCCCCCCCCCcC
Confidence 345577999998643 2233 346873 5999999999986543 11110 0001399998755
No 146
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=77.91 E-value=2.2 Score=37.41 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006754 502 SFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 502 ~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
++.+||.++...+-..+..++++. ..+||+.+|++...|..|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 456789999988888876776654 346999999999999999988776
No 147
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=75.62 E-value=0.62 Score=36.67 Aligned_cols=51 Identities=25% Similarity=0.419 Sum_probs=33.8
Q ss_pred ccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 235 ~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
......|.+|...-. .+..+..- .|...||..|+...+.. . ..||.|+...
T Consensus 11 ~~~~~~C~IC~~~~~--~~~~~~~~-~C~H~fc~~Ci~~~~~~------~--~~CP~Cr~~~ 61 (69)
T 2kiz_A 11 EDTEEKCTICLSILE--EGEDVRRL-PCMHLFHQVCVDQWLIT------N--KKCPICRVDI 61 (69)
T ss_dssp TTCCCSBTTTTBCCC--SSSCEEEC-TTSCEEEHHHHHHHHHH------C--SBCTTTCSBS
T ss_pred CCCCCCCeeCCcccc--CCCcEEEe-CCCCHHHHHHHHHHHHc------C--CCCcCcCccc
Confidence 344578999987532 23334444 39999999999876541 2 4699997654
No 148
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=75.39 E-value=1.8 Score=33.35 Aligned_cols=47 Identities=6% Similarity=0.266 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006754 504 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 551 (632)
Q Consensus 504 ~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR 551 (632)
.+||++....+...+.. .++......++|.++|+++.+|..|....+
T Consensus 4 ~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp CCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHTTHH
T ss_pred CcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45799987776555543 333222367999999999999999976443
No 149
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=73.84 E-value=3.2 Score=34.49 Aligned_cols=45 Identities=16% Similarity=0.375 Sum_probs=33.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccch
Q 006754 500 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKN 549 (632)
Q Consensus 500 rR~r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqN 549 (632)
++++.+|+.++....-..+.. .+ ...+||+.+|++...|..|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 345567899987655556643 33 3568999999999999999753
No 150
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.59 E-value=1.3 Score=36.83 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=33.8
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcc
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCEC 294 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~ 294 (632)
....|.+|...-. .-+.|- .|...||..|+.--|.. ... =.||.|..
T Consensus 14 ~i~~C~IC~~~i~----~g~~C~-~C~h~fH~~Ci~kWl~~--~~~----~~CP~Cr~ 60 (74)
T 2ct0_A 14 AVKICNICHSLLI----QGQSCE-TCGIRMHLPCVAKYFQS--NAE----PRCPHCND 60 (74)
T ss_dssp SSCBCSSSCCBCS----SSEECS-SSCCEECHHHHHHHSTT--CSS----CCCTTTCS
T ss_pred CCCcCcchhhHcc----cCCccC-CCCchhhHHHHHHHHHh--cCC----CCCCCCcC
Confidence 3478999998642 235787 69999999999987763 211 25999964
No 151
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=72.77 E-value=2 Score=34.49 Aligned_cols=50 Identities=28% Similarity=0.488 Sum_probs=33.3
Q ss_pred cccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
.....|.+|...-. ....+.-- .|...||..|+...+. .. ..||.|+...
T Consensus 13 ~~~~~C~IC~~~~~--~~~~~~~~-~C~H~fc~~Ci~~~~~------~~--~~CP~Cr~~~ 62 (78)
T 2ect_A 13 GSGLECPVCKEDYA--LGESVRQL-PCNHLFHDSCIVPWLE------QH--DSCPVCRKSL 62 (78)
T ss_dssp SSSCCCTTTTSCCC--TTSCEEEC-TTSCEEETTTTHHHHT------TT--CSCTTTCCCC
T ss_pred CCCCCCeeCCcccc--CCCCEEEe-CCCCeecHHHHHHHHH------cC--CcCcCcCCcc
Confidence 34578999987532 22333233 3989999999987654 12 5799998654
No 152
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.56 E-value=0.47 Score=38.17 Aligned_cols=49 Identities=27% Similarity=0.622 Sum_probs=33.8
Q ss_pred cccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
.+...|.+|...- ..+..+..- .|...||..|+...+. .. ..||.|+..
T Consensus 21 ~~~~~C~IC~~~~--~~~~~~~~l-~C~H~fh~~Ci~~w~~------~~--~~CP~Cr~~ 69 (75)
T 1x4j_A 21 SEQTLCVVCMCDF--ESRQLLRVL-PCNHEFHAKCVDKWLK------AN--RTCPICRAD 69 (75)
T ss_dssp SSCCEETTTTEEC--CBTCEEEEE-TTTEEEETTHHHHHHH------HC--SSCTTTCCC
T ss_pred CCCCCCeECCccc--CCCCeEEEE-CCCCHhHHHHHHHHHH------cC--CcCcCcCCc
Confidence 3457899999753 224444444 3999999999997654 12 479999754
No 153
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=72.25 E-value=3.4 Score=29.06 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 551 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR 551 (632)
.+++.+...+...+.. .+ ...+||+.||++...|..|....+
T Consensus 5 ~l~~~~~~~i~~~~~~-g~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 4688887666666643 33 366899999999999999986543
No 154
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=71.61 E-value=0.99 Score=39.79 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=29.1
Q ss_pred cccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
..+|.+|+.. -|+ .|...||++|+++|. |.|..|...+
T Consensus 7 C~~C~~C~~~---------~C~-~C~~c~~~~~~~~~~-----------~~~~~c~~~~ 44 (117)
T 4bbq_A 7 CRKCKACVQG---------ECG-VCHYCRDMKKFGGPG-----------RMKQSCVLRQ 44 (117)
T ss_dssp CSCSHHHHSC---------CCS-CSHHHHHSGGGTSCC-----------CSCCCCGGGC
T ss_pred CCcCcCcCCc---------CCC-CCCCCcCCcccCCCC-----------ccccchhhee
Confidence 4678888875 198 699999999998762 8888886543
No 155
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.09 E-value=1.7 Score=35.82 Aligned_cols=50 Identities=24% Similarity=0.534 Sum_probs=32.0
Q ss_pred ccccccccccCCCC----------CCC-CeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAF----------PDN-DIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~----------~~g-~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
++..|.+|...-.. .+. .+++. .|...||..|+..-|.. . -.||.|+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~--~C~H~FH~~Ci~~Wl~~------~--~~CP~CR~~~ 74 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWG--ECNHSFHNCCMSLWVKQ------N--NRCPLCQQDW 74 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE--TTSCEEEHHHHHHHTTT------C--CBCTTTCCBC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeC--CCCCccChHHHHHHHHh------C--CCCCCcCCCc
Confidence 34567777765321 112 23333 39999999999987762 1 2799998653
No 156
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=68.69 E-value=1.1 Score=33.46 Aligned_cols=48 Identities=17% Similarity=0.411 Sum_probs=32.7
Q ss_pred cccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
...|.+|...-. ..+..+..- .|...||..|+...+.. . ..||.|+..
T Consensus 5 ~~~C~IC~~~~~-~~~~~~~~~-~CgH~fc~~Ci~~~~~~------~--~~CP~Cr~~ 52 (55)
T 2ecm_A 5 SSGCPICLEDIH-TSRVVAHVL-PCGHLLHRTCYEEMLKE------G--YRCPLCSGP 52 (55)
T ss_dssp CCSCTTTCCCCC-TTTSCEEEC-TTSCEEETTHHHHHHHH------T--CCCTTSCCS
T ss_pred CCcCcccChhhc-CCCcCeEec-CCCCcccHHHHHHHHHc------C--CcCCCCCCc
Confidence 467999987532 223445555 49999999999866541 1 469999754
No 157
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=66.93 E-value=5.5 Score=33.84 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=32.8
Q ss_pred CCCCCCCCcccCCCCcccccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchhhH
Q 006754 219 SVGCIEGSVIATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKMEI 298 (632)
Q Consensus 219 ~~~~le~s~~~~dg~~~~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~~~ 298 (632)
|.+.|+.+.+....-.....+.|.+|+--.....| ..-...+-+.++. .+|+ + |.||.|-.....
T Consensus 8 ~~~~~~~~~~g~~~~~em~~y~C~vCGyvYD~~~G----------dp~~gI~pGT~fe--dlPd-d--W~CPvCga~K~~ 72 (81)
T 2kn9_A 8 HMGTLEAQTQGPGSMNDYKLFRCIQCGFEYDEALG----------WPEDGIAAGTRWD--DIPD-D--WSCPDCGAAKSD 72 (81)
T ss_dssp CCCCCCCCCCCCCCSSCCCEEEETTTCCEEETTTC----------BTTTTBCTTCCTT--TSCT-T--CCCTTTCCCGGG
T ss_pred cccceeecccCCcCCCCcceEEeCCCCEEEcCCcC----------CcccCcCCCCChh--HCCC-C--CcCCCCCCCHHH
Confidence 34555555443332222335778888753211111 1112233334444 6775 4 999999876543
Q ss_pred h
Q 006754 299 I 299 (632)
Q Consensus 299 ~ 299 (632)
+
T Consensus 73 F 73 (81)
T 2kn9_A 73 F 73 (81)
T ss_dssp E
T ss_pred c
Confidence 3
No 158
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=66.43 E-value=3.4 Score=29.64 Aligned_cols=43 Identities=7% Similarity=0.254 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
.|++++...+...+... ....+||+.||++...|..|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 35777776666666543 24578999999999999999986554
No 159
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=66.19 E-value=1.7 Score=38.28 Aligned_cols=27 Identities=33% Similarity=0.618 Sum_probs=21.6
Q ss_pred CCCccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 261 TCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 261 ~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
.|...||..|+.+-|.. . -.||.|+..
T Consensus 72 ~C~H~FH~~Ci~~Wl~~------~--~~CP~Cr~~ 98 (106)
T 3dpl_R 72 VCNHAFHFHCISRWLKT------R--QVCPLDNRE 98 (106)
T ss_dssp TTSCEEEHHHHHHHHTT------C--SBCSSSCSB
T ss_pred ccCcEECHHHHHHHHHc------C--CcCcCCCCc
Confidence 49999999999987751 2 469999865
No 160
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=66.06 E-value=1.4 Score=39.67 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=0.0
Q ss_pred CCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 261 TCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 261 ~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
.|...||..|+.+-|.. . -.||.|+...
T Consensus 83 ~C~H~FH~~CI~~Wl~~------~--~~CP~Cr~~~ 110 (117)
T 4a0k_B 83 VCNHAFHFHCISRWLKT------R--QVCPLDNREW 110 (117)
T ss_dssp ------------------------------------
T ss_pred CcCceEcHHHHHHHHHc------C--CcCCCCCCee
Confidence 49999999999987762 2 3699997653
No 161
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.08 E-value=3.8 Score=32.44 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=33.5
Q ss_pred cccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchhh
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKME 297 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~~ 297 (632)
.+...|.+|...- .+.+... |...||..|+...+.. . ..||.|+....
T Consensus 13 ~~~~~C~IC~~~~----~~~~~~~--CgH~fC~~Ci~~~~~~------~--~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTC----VHPVSLP--CKHVFCYLCVKGASWL------G--KRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBC----SSEEEET--TTEEEEHHHHHHCTTC------S--SBCSSSCCBCC
T ss_pred CCCCCCccCCccc----CCCEEcc--CCCHHHHHHHHHHHHC------C--CcCcCcCchhC
Confidence 3457899998753 2333333 9999999999866541 2 58999987654
No 162
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.98 E-value=1.1 Score=35.65 Aligned_cols=49 Identities=33% Similarity=0.737 Sum_probs=33.2
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
....|.+|..... ....++... |...||..|+...+.. . ..||.|+...
T Consensus 14 ~~~~C~IC~~~~~-~~~~~~~~~--C~H~f~~~Ci~~~~~~------~--~~CP~Cr~~~ 62 (74)
T 2ep4_A 14 LHELCAVCLEDFK-PRDELGICP--CKHAFHRKCLIKWLEV------R--KVCPLCNMPV 62 (74)
T ss_dssp CSCBCSSSCCBCC-SSSCEEEET--TTEEEEHHHHHHHHHH------C--SBCTTTCCBC
T ss_pred CCCCCcCCCcccC-CCCcEEEcC--CCCEecHHHHHHHHHc------C--CcCCCcCccc
Confidence 3568999998632 223344443 9999999999876541 1 3799997654
No 163
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=60.91 E-value=2.7 Score=36.46 Aligned_cols=75 Identities=15% Similarity=0.340 Sum_probs=45.2
Q ss_pred cccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchhhHhh--hhhccCCceeccc
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKMEIIE--SMNAHIGTSFSVN 313 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~~~~~--~~n~~~g~~f~l~ 313 (632)
.++..|.+|...-. ..+++ . |...||..|+...+. .+. ..||.|+....... .+...+.....+.
T Consensus 13 ~~~~~C~iC~~~~~---~p~~~--~-CgH~fC~~Ci~~~~~-----~~~--~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~ 79 (115)
T 3l11_A 13 LSECQCGICMEILV---EPVTL--P-CNHTLCKPCFQSTVE-----KAS--LCCPFCRRRVSSWTRYHTRRNSLVNVELW 79 (115)
T ss_dssp HHHHBCTTTCSBCS---SCEEC--T-TSCEECHHHHCCCCC-----TTT--SBCTTTCCBCHHHHHHHHHTTCCBCHHHH
T ss_pred CCCCCCccCCcccC---ceeEc--C-CCCHHhHHHHHHHHh-----HCc--CCCCCCCcccCccccccccccchhhHHHH
Confidence 44578999997532 34443 3 999999999997654 123 68999998765321 1112222333344
Q ss_pred Cccccccccc
Q 006754 314 SNWQDIFKEE 323 (632)
Q Consensus 314 ~~~~~~F~e~ 323 (632)
.-++.+|+..
T Consensus 80 ~~i~~~~p~~ 89 (115)
T 3l11_A 80 TIIQKHYPRE 89 (115)
T ss_dssp HHHHHHSHHH
T ss_pred HHHHHHCCHH
Confidence 4556666553
No 164
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=60.40 E-value=7 Score=32.44 Aligned_cols=48 Identities=6% Similarity=0.120 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 557 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~ 557 (632)
.+++.|.+.|.-.|-+. ..-.+||+.||++...|+.+....|.+.++.
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47899999888766433 2457899999999999999998888855444
No 165
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=58.54 E-value=0.81 Score=36.25 Aligned_cols=48 Identities=23% Similarity=0.562 Sum_probs=32.2
Q ss_pred ccccccccccCCCCCCCC-eEEeCCCCCc---cccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 237 EHIICAKCKLREAFPDND-IVLCDGTCNC---AFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~-lLlCDG~C~r---afH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
+...|.+|.... ++. +.-|. |.. .||..||...+.. .+. +.|+.|...
T Consensus 5 ~~~~CrIC~~~~---~~~l~~PC~--C~gs~~~~H~~Cl~~W~~~----~~~--~~C~~C~~~ 56 (60)
T 1vyx_A 5 DVPVCWICNEEL---GNERFRACG--CTGELENVHRSCLSTWLTI----SRN--TACQICGVV 56 (60)
T ss_dssp SCCEETTTTEEC---SCCCCCSCC--CSSGGGSCCHHHHHHHHHH----HTC--SBCTTTCCB
T ss_pred CCCEeEEeecCC---CCceecCcC--CCCchhhhHHHHHHHHHHh----CCC--CccCCCCCe
Confidence 346799998753 233 34453 554 8999999987751 134 899999754
No 166
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=57.20 E-value=4.5 Score=31.21 Aligned_cols=45 Identities=9% Similarity=-0.015 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHH
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 554 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~ 554 (632)
.+++.+...|.-.|-.. ..-.+||+.||+++..|..|....|.+.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 47899999998876433 2347899999999999999988877743
No 167
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=56.10 E-value=2.3 Score=36.68 Aligned_cols=55 Identities=22% Similarity=0.307 Sum_probs=32.1
Q ss_pred cccccccccCCCCC-------------CCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 238 HIICAKCKLREAFP-------------DNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 238 ~~~C~vC~~~~~~~-------------~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+..|.+|...-..+ +..++..- .|...||..|+...+.. ..+... -.||.|+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~wl~~-~~~~~~--~~CP~CR~~~ 92 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLT-KCSHAFHLLCLLAMYCN-GNKDGS--LQCPSCKTIY 92 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEES-SSCCEECHHHHHHHHHH-TCCSSC--CBCTTTCCBS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecC-CCCCcccHHHHHHHHHc-ccCCCC--CcCCCCCCcc
Confidence 35799997652111 11233344 49999999999976621 011122 5799997543
No 168
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=55.93 E-value=7.3 Score=33.55 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006754 503 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 503 r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...||+.+.+.|.-++..-.| .+||+.||+++..|+.+..+-+.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s~------~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFLV------TEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCCH------HHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCH------HHHHHHHCcCHHHHHHHHHHHHH
Confidence 456899999999887643333 89999999999999998887666
No 169
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=53.40 E-value=7.3 Score=32.83 Aligned_cols=44 Identities=7% Similarity=0.036 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006754 504 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 553 (632)
Q Consensus 504 ~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k 553 (632)
..+++.+.+.|.-+|..-.| .+||+.||+++..|+.+..+-+.+
T Consensus 26 ~~Lt~~e~~vl~l~~~g~s~------~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGLTN------KQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp -CCCHHHHHHHHHHHTTCCH------HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCCCH------HHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45899999999987544333 789999999999999988877773
No 170
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=52.90 E-value=11 Score=31.45 Aligned_cols=44 Identities=5% Similarity=0.209 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006754 504 HRMPPNAVEKLRQVFAEN-ELPSRIVKENLSKELSLEPEKVNKWFKNAR 551 (632)
Q Consensus 504 ~rft~~Q~~~Le~~F~~~-~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR 551 (632)
.+||+++....-..+... .+ ...+||+.+|++..+|..|....+
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHHHh
Confidence 457998877555555332 22 367999999999999999976444
No 171
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=52.55 E-value=3.6 Score=37.09 Aligned_cols=44 Identities=18% Similarity=0.466 Sum_probs=30.6
Q ss_pred ccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 239 IICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 239 ~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
..|.+|...- .+.+... |...||..|+...+. .. -.||.|+...
T Consensus 54 ~~C~iC~~~~----~~~~~~~--CgH~fc~~Ci~~~~~------~~--~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYF----IEAVTLN--CAHSFCSYCINEWMK------RK--IECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBC----SSEEEET--TSCEEEHHHHHHHTT------TC--SBCTTTCCBC
T ss_pred CCCcccCccc----CCceECC--CCCCccHHHHHHHHH------cC--CcCCCCCCcC
Confidence 4699998763 2334443 888999999986554 12 4699998754
No 172
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=50.94 E-value=11 Score=33.10 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHhh
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 558 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~~ 558 (632)
.+++.+.+.|. .|- ..| .-.+||+.||++...|+.+....|.+.++.-
T Consensus 109 ~L~~~~r~v~~-~~~-~g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-RGY----SYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHT-TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 46888888888 332 233 4578999999999999999988888555443
No 173
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=50.56 E-value=4.4 Score=37.42 Aligned_cols=48 Identities=21% Similarity=0.500 Sum_probs=34.1
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+...|.+|...- .+-+.+- .|...||..|+...+. .+. ..||.|+...
T Consensus 53 ~~~~C~IC~~~~----~~p~~~~-~CgH~fC~~Ci~~~~~-----~~~--~~CP~Cr~~~ 100 (165)
T 2ckl_B 53 SELMCPICLDML----KNTMTTK-ECLHRFCADCIITALR-----SGN--KECPTCRKKL 100 (165)
T ss_dssp HHHBCTTTSSBC----SSEEEET-TTCCEEEHHHHHHHHH-----TTC--CBCTTTCCBC
T ss_pred CCCCCcccChHh----hCcCEeC-CCCChhHHHHHHHHHH-----hCc--CCCCCCCCcC
Confidence 456899998763 2344554 3999999999987654 123 6799998764
No 174
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=50.52 E-value=4.5 Score=40.43 Aligned_cols=46 Identities=24% Similarity=0.470 Sum_probs=32.6
Q ss_pred cccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcc
Q 006754 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCEC 294 (632)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~ 294 (632)
...|.+|..--. .-+.|. .|...||..|+.--+. ... . =.||.|..
T Consensus 180 i~~C~iC~~iv~----~g~~C~-~C~~~~H~~C~~~~~~--~~~--~--~~CP~C~~ 225 (238)
T 3nw0_A 180 VKICNICHSLLI----QGQSCE-TCGIRMHLPCVAKYFQ--SNA--E--PRCPHCND 225 (238)
T ss_dssp CCBCTTTCSBCS----SCEECS-SSCCEECHHHHHHHTT--TCS--S--CBCTTTCC
T ss_pred CCcCcchhhHHh----CCcccC-ccChHHHHHHHHHHHH--hCC--C--CCCCCCCC
Confidence 467999998643 237898 6999999999986543 121 1 36999954
No 175
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=50.46 E-value=14 Score=31.32 Aligned_cols=46 Identities=15% Similarity=0.403 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHH-HhC-CCCCH-HHHHHHHHHhCCCcchhhhccch
Q 006754 504 HRMPPNAVEKLRQVF-AEN-ELPSR-IVKENLSKELSLEPEKVNKWFKN 549 (632)
Q Consensus 504 ~rft~~Q~~~Le~~F-~~~-~YPs~-~~r~~LA~~lgLt~~qV~iWFqN 549 (632)
.+||+++....-..+ ... .|++. ....++|..+|+++.+|..|..-
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 357999876444444 332 35553 46788999999999999999654
No 176
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=47.00 E-value=3.7 Score=31.94 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=31.3
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
....|.+|...- .+.. ..- .|...||..|+...+. .. ..||.|+...
T Consensus 4 ~~~~C~IC~~~~---~~~~-~~~-~C~H~fc~~Ci~~~~~------~~--~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDP---SNYS-MAL-PCLHAFCYVCITRWIR------QN--PTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCC---CSCE-EET-TTTEEESTTHHHHHHH------HS--CSTTTTCCCC
T ss_pred CCCCCeeCCccc---cCCc-Eec-CCCCeeHHHHHHHHHh------Cc--CcCcCCChhh
Confidence 346799998763 1222 334 4999999999986543 11 4799997654
No 177
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=46.41 E-value=12 Score=27.75 Aligned_cols=39 Identities=10% Similarity=0.258 Sum_probs=28.9
Q ss_pred CC--HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccch
Q 006754 506 MP--PNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKN 549 (632)
Q Consensus 506 ft--~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqN 549 (632)
++ +.+...+...|. ..+ ...+||+.||++...|..|+..
T Consensus 14 l~~~~~~~~~i~~l~~-~g~----s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 14 VESEDDLVSVAHELAK-MGY----TVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp ECSHHHHHHHHHHHHH-TTC----CHHHHHHHHTSCHHHHHHHHTC
T ss_pred HhcCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHh
Confidence 45 667666666654 333 4668999999999999999853
No 178
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=46.06 E-value=8.4 Score=31.77 Aligned_cols=51 Identities=16% Similarity=0.395 Sum_probs=33.2
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+...|.+|...-...+-.++-|. |...|+..|+.--+. .+. ..||.|+...
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~--CGH~fC~~Cl~~~~~-----~~~--~~CP~CR~~~ 60 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCT--CGYQICRFCWHRIRT-----DEN--GLCPACRKPY 60 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSST--TSCCCCHHHHHHHTT-----SSC--SBCTTTCCBC
T ss_pred cCCcCCccCccCccccccccccC--CCCCcCHHHHHHHHh-----cCC--CCCCCCCCcc
Confidence 34679999985432222344454 888899999875443 123 7899998754
No 179
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=45.72 E-value=10 Score=29.41 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006754 503 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 553 (632)
Q Consensus 503 r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k 553 (632)
...+++.+.+.|.-++ ..+ .-.+||+.||+++..|..++.+-+.+
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3458999999998843 333 44689999999999999998877663
No 180
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.62 E-value=7.5 Score=30.47 Aligned_cols=50 Identities=24% Similarity=0.538 Sum_probs=33.1
Q ss_pred cccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
.+...|.+|...-. ..++ . . |...||..|+...+.. ..+. -.||.|+...
T Consensus 18 ~~~~~C~IC~~~~~---~~~~-~-~-CgH~fC~~Ci~~~~~~---~~~~--~~CP~Cr~~~ 67 (73)
T 2ysl_A 18 QEEVICPICLDILQ---KPVT-I-D-CGHNFCLKCITQIGET---SCGF--FKCPLCKTSV 67 (73)
T ss_dssp CCCCBCTTTCSBCS---SEEE-C-T-TCCEEEHHHHHHHCSS---SCSC--CCCSSSCCCC
T ss_pred ccCCEeccCCcccC---CeEE-c-C-CCChhhHHHHHHHHHc---CCCC--CCCCCCCCcC
Confidence 34578999997631 3333 3 3 9999999999876541 1122 5799998654
No 181
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.00 E-value=5 Score=32.49 Aligned_cols=47 Identities=17% Similarity=0.363 Sum_probs=32.2
Q ss_pred cccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
.....|.+|...- .+-+.- .|...||..|+...+. .. ..||.|+...
T Consensus 13 ~~~~~C~IC~~~~----~~p~~~--~CgH~fC~~Ci~~~~~------~~--~~CP~Cr~~~ 59 (81)
T 2csy_A 13 EIPFRCFICRQAF----QNPVVT--KCRHYFCESCALEHFR------AT--PRCYICDQPT 59 (81)
T ss_dssp CCCSBCSSSCSBC----CSEEEC--TTSCEEEHHHHHHHHH------HC--SBCSSSCCBC
T ss_pred CCCCCCcCCCchh----cCeeEc--cCCCHhHHHHHHHHHH------CC--CcCCCcCccc
Confidence 3456899998763 223333 3999999999986554 12 5799998764
No 182
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=43.76 E-value=14 Score=32.55 Aligned_cols=47 Identities=9% Similarity=0.179 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 556 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K 556 (632)
.+++.|.+.|.-.|... ..-.++|+.||+++..|+.|....|.+.++
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47899999998876543 234789999999999999999998875444
No 183
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=43.60 E-value=14 Score=29.28 Aligned_cols=50 Identities=8% Similarity=-0.007 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHH
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 555 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~ 555 (632)
.+++.+.+.|...|.-..- ....-.+||+.||++...|+.|....+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4799999999998852100 0123368999999999999998887777443
No 184
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=43.43 E-value=8.8 Score=29.98 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
.+++.+.+.|...|.-+.+-. ..-.+||+.||+++..|+.+....+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478999999998884322222 23367999999999999998776666
No 185
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.42 E-value=5.1 Score=31.82 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006754 506 MPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 553 (632)
Q Consensus 506 ft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k 553 (632)
+++.+.+.|.-+| ..+ .-.+||+.||+++..|+.++.+-+.+
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 6888888888743 333 23589999999999999988877763
No 186
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=43.33 E-value=8.1 Score=28.95 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 16 s~~~lA~~~gis~~~i~~~e~g~~~ 40 (66)
T 2xi8_A 16 SQSELAALLEVSRQTINGIEKNKYN 40 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3578999999999999999998764
No 187
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=43.10 E-value=15 Score=31.36 Aligned_cols=34 Identities=26% Similarity=0.641 Sum_probs=25.3
Q ss_pred CCeEEeCCCCCc-cccccccCCCCCCCCCCCCCCccccCcCcc
Q 006754 253 NDIVLCDGTCNC-AFHQKCLDPPLDTESIPPGDQGWFCKFCEC 294 (632)
Q Consensus 253 g~lLlCDG~C~r-afH~~CL~PPL~~~~iP~gd~~W~C~~C~~ 294 (632)
-.||+|. .|.. +-|..|.... ....+ |.|..|..
T Consensus 44 W~L~lC~-~Cgs~gtH~~Cs~l~-----~~~~~--weC~~C~~ 78 (85)
T 1weq_A 44 WRLILCA-TCGSHGTHRDCSSLR-----PNSKK--WECNECLP 78 (85)
T ss_dssp TBCEECS-SSCCCEECSGGGTCC-----TTCSC--CCCTTTSC
T ss_pred EEEEeCc-ccCCchhHHHHhCCc-----CCCCC--EECCcCcc
Confidence 4599999 6994 7999999832 12234 99999973
No 188
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.07 E-value=7.6 Score=31.46 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=33.5
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+...|.+|...........+... |...||..|+...+.. - ... ..||.|+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~--CgH~fC~~Ci~~~~~~--~-~~~--~~CP~Cr~~~ 66 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLH--CGHTICRQCLEKLLAS--S-ING--VRCPFCSKIT 66 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECS--SSCEEEHHHHHHHHHH--C-SSC--BCCTTTCCCB
T ss_pred CCCCCccCCccccccCCCeEECC--CCChhhHHHHHHHHHc--C-CCC--cCCCCCCCcc
Confidence 35679999876421111134333 9999999999876542 1 122 6899998754
No 189
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=42.89 E-value=8.9 Score=32.59 Aligned_cols=31 Identities=29% Similarity=0.742 Sum_probs=23.4
Q ss_pred ccccccccCCCCCCCCeEEeC-CCCCccccccccC
Q 006754 239 IICAKCKLREAFPDNDIVLCD-GTCNCAFHQKCLD 272 (632)
Q Consensus 239 ~~C~vC~~~~~~~~g~lLlCD-G~C~rafH~~CL~ 272 (632)
..|.+|+... .|-.|-|. +.|..+||..|..
T Consensus 18 l~C~iC~~~~---~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 18 LTCYLCKQKG---VGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCBTTTTBCC---SSCEEECSCTTTCCEEEHHHHH
T ss_pred CCCcCCCCCC---CcEeEecCCCCCCCcCcHHHHH
Confidence 5699997641 26778887 2599999999964
No 190
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=42.37 E-value=8.6 Score=29.00 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 20 RQAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCCC
Confidence 3678999999999999999998765
No 191
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=42.08 E-value=8.3 Score=30.76 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.||++...|..|..+++.
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~~~ 37 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARGRV 37 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHTCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCCC
Confidence 4689999999999999999998774
No 192
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.70 E-value=2.5 Score=32.72 Aligned_cols=51 Identities=20% Similarity=0.456 Sum_probs=32.8
Q ss_pred cccccccccccCCCCC--CCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 236 HEHIICAKCKLREAFP--DNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~--~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
.+...|.+|....... .+.++..- .|...||..|+...+.. . -.||.|+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~------~--~~CP~Cr~~ 65 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN------A--NTCPTCRKK 65 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH------C--SSCTTTCCC
T ss_pred CCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc------C--CCCCCCCCc
Confidence 3457799998753211 13344444 49999999999865431 1 369999764
No 193
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=41.60 E-value=18 Score=32.72 Aligned_cols=49 Identities=10% Similarity=0.216 Sum_probs=37.4
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhCCCCCHHHHHHHHH----Hh--CCCcchhhhccchhc
Q 006754 500 RRSFHRMPPNAVEKLRQVF-AENELPSRIVKENLSK----EL--SLEPEKVNKWFKNAR 551 (632)
Q Consensus 500 rR~r~rft~~Q~~~Le~~F-~~~~YPs~~~r~~LA~----~l--gLt~~qV~iWFqNrR 551 (632)
+++|.++|.+|..+|-.++ ..++-.+ +.+||. .. |++..+|..|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~---q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSG---QQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCC---HHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 4566778999999999998 6676654 455677 77 778888999987743
No 194
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=41.45 E-value=14 Score=29.26 Aligned_cols=53 Identities=13% Similarity=0.325 Sum_probs=33.5
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+...|.+|...-. +.++ . .|...||..|+...+....... ...-.||.|+...
T Consensus 11 ~~~~C~IC~~~~~---~p~~-l--~CgH~fC~~Ci~~~~~~~~~~~-~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 11 EEVTCPICLELLT---EPLS-L--DCGHSLCRACITVSNKEAVTSM-GGKSSCPVCGISY 63 (79)
T ss_dssp CCCEETTTTEECS---SCCC-C--SSSCCCCHHHHSCCCCCCSSSC-CCCCCCSSSCCCC
T ss_pred cCCCCcCCCcccC---CeeE-C--CCCCHHHHHHHHHHHHhcccCC-CCCCcCCCCCCcC
Confidence 3567999987632 2333 2 3889999999997765211111 1126899998765
No 195
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=40.96 E-value=9.2 Score=29.17 Aligned_cols=25 Identities=4% Similarity=0.086 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 18 sq~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 18 TQTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 3678999999999999999988765
No 196
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=40.65 E-value=3.2 Score=36.55 Aligned_cols=69 Identities=14% Similarity=0.314 Sum_probs=40.3
Q ss_pred cccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchhhHhhhhhccCCceecccCccc
Q 006754 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKMEIIESMNAHIGTSFSVNSNWQ 317 (632)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~~~~~~~n~~~g~~f~l~~~~~ 317 (632)
...|.+|...-. ..++ .. |...||..|+...+. ... ..||.|+...... ..+...+.+..-+.
T Consensus 52 ~~~C~IC~~~~~---~p~~-~~--CgH~fC~~Ci~~~~~-----~~~--~~CP~Cr~~~~~~----~~~~~n~~l~~~i~ 114 (124)
T 3fl2_A 52 TFQCICCQELVF---RPIT-TV--CQHNVCKDCLDRSFR-----AQV--FSCPACRYDLGRS----YAMQVNQPLQTVLN 114 (124)
T ss_dssp HTBCTTTSSBCS---SEEE-CT--TSCEEEHHHHHHHHH-----TTC--CBCTTTCCBCCTT----CCCCCCHHHHHHHH
T ss_pred CCCCCcCChHHc---CcEE-ee--CCCcccHHHHHHHHh-----HCc--CCCCCCCccCCCC----CCCCCCHHHHHHHH
Confidence 467999987531 2333 33 999999999986653 122 5899998765321 12223333444445
Q ss_pred cccccc
Q 006754 318 DIFKEE 323 (632)
Q Consensus 318 ~~F~e~ 323 (632)
.+|++.
T Consensus 115 ~~~p~~ 120 (124)
T 3fl2_A 115 QLFPGY 120 (124)
T ss_dssp HHSTTT
T ss_pred HHcccc
Confidence 555553
No 197
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=40.55 E-value=3.6 Score=35.06 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=35.2
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+...|.+|...- .+-+.|- .|...||..|+...+.. .. ..||.|+...
T Consensus 21 ~~~~C~IC~~~~----~~p~~~~-~CgH~FC~~Ci~~~~~~-----~~--~~CP~Cr~~~ 68 (100)
T 3lrq_A 21 EVFRCFICMEKL----RDARLCP-HCSKLCCFSCIRRWLTE-----QR--AQCPHCRAPL 68 (100)
T ss_dssp HHTBCTTTCSBC----SSEEECT-TTCCEEEHHHHHHHHHH-----TC--SBCTTTCCBC
T ss_pred CCCCCccCCccc----cCccccC-CCCChhhHHHHHHHHHH-----Cc--CCCCCCCCcC
Confidence 346799999863 3556667 59999999999876542 11 4799998765
No 198
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.47 E-value=5.4 Score=31.90 Aligned_cols=52 Identities=21% Similarity=0.516 Sum_probs=32.6
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+...|.+|...-. ..+ ... |...||..|+...+.......+. ..||.|+...
T Consensus 18 ~~~~C~IC~~~~~---~p~-~~~--CgH~fC~~Ci~~~~~~~~~~~~~--~~CP~Cr~~~ 69 (85)
T 2ecw_A 18 EEVTCPICLELLK---EPV-SAD--CNHSFCRACITLNYESNRNTDGK--GNCPVCRVPY 69 (85)
T ss_dssp TTTSCTTTCSCCS---SCE-ECT--TSCCBCHHHHHHHHHHSBCTTSC--BCCTTTCCCC
T ss_pred cCCCCcCCChhhC---cce-eCC--CCCHHHHHHHHHHHHhccCCCCC--CCCCCCCCcC
Confidence 4567999987632 233 333 88899999998654410101123 7899998654
No 199
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=39.52 E-value=10 Score=29.41 Aligned_cols=25 Identities=12% Similarity=0.389 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 25 s~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 25 TNRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3678999999999999999998764
No 200
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=39.09 E-value=0.62 Score=43.56 Aligned_cols=29 Identities=10% Similarity=-0.055 Sum_probs=22.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCCHH
Q 006754 499 IRRSFHRMPPNAVEKLRQVFAENELPSRI 527 (632)
Q Consensus 499 ~rR~r~rft~~Q~~~Le~~F~~~~YPs~~ 527 (632)
.+|+++.|+..|+++|+..|+.++||...
T Consensus 136 ~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 136 GSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -----EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 47888999999999999999999999754
No 201
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=39.01 E-value=11 Score=31.34 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006754 503 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 553 (632)
Q Consensus 503 r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k 553 (632)
...+|+.+.+.|.-+|.. |. -.+||+.||+++..|+.+..+-+.+
T Consensus 27 l~~Lt~~e~~vl~l~~~g--~s----~~eIA~~l~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 27 YEMLTEREMEILLLIAKG--YS----NQEIASASHITIKTVKTHVSNILSK 71 (91)
T ss_dssp GGGCCSHHHHHHHHHHTT--CC----TTHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHcC--CC----HHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345899999999885433 32 2479999999999999988877763
No 202
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.92 E-value=8.9 Score=29.91 Aligned_cols=45 Identities=29% Similarity=0.610 Sum_probs=31.4
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+...|.+|..... . +.- .|...||..|+...+. .. ..||.|+...
T Consensus 14 ~~~~C~IC~~~~~---~--~~~--~CgH~fc~~Ci~~~~~------~~--~~CP~Cr~~~ 58 (70)
T 2ecn_A 14 DEEECCICMDGRA---D--LIL--PCAHSFCQKCIDKWSD------RH--RNCPICRLQM 58 (70)
T ss_dssp CCCCCSSSCCSCC---S--EEE--TTTEEECHHHHHHSSC------CC--SSCHHHHHCT
T ss_pred CCCCCeeCCcCcc---C--ccc--CCCCcccHHHHHHHHH------Cc--CcCCCcCCcc
Confidence 3578999988632 2 333 3888899999997654 22 6799997554
No 203
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=38.69 E-value=7.5 Score=31.87 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006754 503 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 553 (632)
Q Consensus 503 r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k 553 (632)
...+++.+.+.|.-+|. . ..-.+||+.||++...|+.+..+-+.+
T Consensus 19 ~~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp GGGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34589999999988532 2 355789999999999999988877663
No 204
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=38.50 E-value=23 Score=27.99 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
.|+.+.+..|.....- ...+||+.+|++...|..|-++++.
T Consensus 10 ~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 10 TVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 4688888888766543 4689999999999999999998764
No 205
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=38.26 E-value=2.5 Score=33.07 Aligned_cols=52 Identities=19% Similarity=0.463 Sum_probs=33.7
Q ss_pred cccccccccccCCCCC--CCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 236 HEHIICAKCKLREAFP--DNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~--~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
.+...|.+|...-..+ .+.++..- .|...||..|+...+.. . -.||.|+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~------~--~~CP~Cr~~~ 61 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN------A--NTCPTCRKKI 61 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH------C--SBCTTTCCBC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc------C--CCCCCCCCcc
Confidence 3457799998752111 13444455 49999999999865531 1 3799997654
No 206
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=37.05 E-value=12 Score=29.13 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 23 sq~~lA~~~gis~~~is~~e~g~~~ 47 (73)
T 3omt_A 23 TNLWLTETLDKNKTTVSKWCTNDVQ 47 (73)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3678999999999999999998754
No 207
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=36.71 E-value=12 Score=28.96 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 20 RQAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4678999999999999999998765
No 208
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=36.56 E-value=12 Score=28.33 Aligned_cols=25 Identities=4% Similarity=0.133 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 16 sq~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 16 NQAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3678999999999999999988765
No 209
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=36.46 E-value=17 Score=34.03 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 556 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K 556 (632)
.+++.+...|.-.|-+ ...-.+||+.||+++..|+.+....|.+.++
T Consensus 187 ~L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE-----ELPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHTS-----CCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc-----CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4789999999888743 2345789999999999999999888885444
No 210
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=36.41 E-value=12 Score=29.04 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~~~ 49 (77)
T 2b5a_A 25 SQEELADLAGLHRTYISEVERGDRN 49 (77)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCSC
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCC
Confidence 4678999999999999999988764
No 211
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=36.07 E-value=14 Score=28.70 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCcchhhhcc
Q 006754 528 VKENLSKELSLEPEKVNKWF 547 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWF 547 (632)
...+||+.||++..-|..|+
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 46889999999999999999
No 212
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.74 E-value=19 Score=31.25 Aligned_cols=44 Identities=18% Similarity=0.467 Sum_probs=29.6
Q ss_pred cccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
...|.+|...- ...+++.. |...|+..|+.-.+. ..||.|+...
T Consensus 22 ~~~C~IC~~~~---~~pv~~~~--CgH~fC~~Ci~~~~~----------~~CP~Cr~~~ 65 (117)
T 1jm7_B 22 LLRCSRCTNIL---REPVCLGG--CEHIFCSNCVSDCIG----------TGCPVCYTPA 65 (117)
T ss_dssp TTSCSSSCSCC---SSCBCCCS--SSCCBCTTTGGGGTT----------TBCSSSCCBC
T ss_pred CCCCCCCChHh---hCccEeCC--CCCHHHHHHHHHHhc----------CCCcCCCCcC
Confidence 46799998763 23444433 878888888875432 3699998764
No 213
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=35.71 E-value=13 Score=29.69 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 27 tq~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 27 SYESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 4678999999999999999998875
No 214
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=34.99 E-value=2.4 Score=32.32 Aligned_cols=50 Identities=20% Similarity=0.481 Sum_probs=31.8
Q ss_pred cccccccccCCCCC--CCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 238 HIICAKCKLREAFP--DNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 238 ~~~C~vC~~~~~~~--~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
...|.+|...-..+ .+..+..- .|...||..|+...+. .. ..||.|+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~------~~--~~CP~Cr~~~ 54 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLK------NA--NTCPTCRKKI 54 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHH------HC--SBCTTTCCBC
T ss_pred CCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHH------cC--CCCCCCCccC
Confidence 45799998752111 12333334 3999999999986543 12 4799998654
No 215
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=34.30 E-value=14 Score=28.69 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCcchhhhccchhc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNAR 551 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR 551 (632)
...+||+.+|++...|..|..+++
T Consensus 22 sq~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 22 TINRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp CHHHHHHHHTCCHHHHHHHHCTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 367899999999999999999987
No 216
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.00 E-value=14 Score=27.40 Aligned_cols=45 Identities=18% Similarity=0.519 Sum_probs=29.2
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcC
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFC 292 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C 292 (632)
+...|.+|..... ..++ - .|...||..|+...+. .+. .. ..||.|
T Consensus 14 ~~~~C~IC~~~~~---~p~~-~--~CgH~fC~~Ci~~~~~--~~~-~~--~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK---EPVI-I--ECGHNFCKACITRWWE--DLE-RD--FPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS---SCCC-C--SSCCCCCHHHHHHHTT--SSC-CS--CCCSCC
T ss_pred cCCCCccCCcccC---ccEe-C--CCCCccCHHHHHHHHH--hcC-CC--CCCCCC
Confidence 4568999998642 2222 2 3888999999987654 121 22 578887
No 217
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=33.80 E-value=14 Score=28.31 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 28 s~~~lA~~~gis~~~i~~~e~g~~~ 52 (74)
T 1y7y_A 28 SQETLAFLSGLDRSYVGGVERGQRN 52 (74)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCSC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCC
Confidence 4678999999999999999988754
No 218
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=33.16 E-value=27 Score=30.51 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHHh
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 557 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K~ 557 (632)
.+++.+.+.|.-.|... ..-.++|+.||+++..|+.+....|.+.++.
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 46888988888776433 2347899999999999999999888855443
No 219
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=32.89 E-value=12 Score=31.97 Aligned_cols=47 Identities=23% Similarity=0.560 Sum_probs=32.7
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+...|.+|...- .+-+... .|...||..|+...+.. . -.||.|+...
T Consensus 14 ~~~~C~IC~~~~----~~p~~~~-~CgH~fC~~Ci~~~~~~------~--~~CP~Cr~~~ 60 (108)
T 2ckl_A 14 PHLMCVLCGGYF----IDATTII-ECLHSFCKTCIVRYLET------S--KYCPICDVQV 60 (108)
T ss_dssp GGTBCTTTSSBC----SSEEEET-TTCCEEEHHHHHHHHTS------C--SBCTTTCCBS
T ss_pred CcCCCccCChHH----hCcCEeC-CCCChhhHHHHHHHHHh------C--CcCcCCCccc
Confidence 356799998763 2334444 39999999999866541 1 4799998764
No 220
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=31.88 E-value=30 Score=26.76 Aligned_cols=15 Identities=33% Similarity=1.059 Sum_probs=11.3
Q ss_pred CCCCCCCccccCcCcchh
Q 006754 279 SIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 279 ~iP~gd~~W~C~~C~~k~ 296 (632)
.+|+ + |.||.|....
T Consensus 32 ~lP~-d--w~CP~Cg~~K 46 (52)
T 1e8j_A 32 DLPD-D--WACPVCGASK 46 (52)
T ss_dssp SSCT-T--CCCSSSCCCT
T ss_pred HCCC-C--CcCCCCCCcH
Confidence 5775 4 9999997654
No 221
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=31.84 E-value=3.9 Score=35.55 Aligned_cols=51 Identities=22% Similarity=0.463 Sum_probs=34.0
Q ss_pred cccccccccccCCCCC--CCCe-EEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 236 HEHIICAKCKLREAFP--DNDI-VLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~--~g~l-LlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
.+...|.+|...-... .+.+ +.+. |...||..|+.+.+.. . ..||.|+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~--CgH~fc~~Ci~~~~~~------~--~~CP~Cr~~~ 123 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE--CGHVFCSQCLRDSLKN------A--NTCPTCRKKI 123 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET--TSBEEEHHHHHHHHHH------C--SBCTTTCCBC
T ss_pred CCCCCCCCCCCccccccccCcceEeCC--CCChhhHHHHHHHHHc------C--CCCCCCCCcC
Confidence 4457799998742110 1223 4443 9999999999987651 2 5899998754
No 222
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=31.46 E-value=16 Score=30.05 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
.+.+||+.+|++...|..|..+++.
T Consensus 24 sq~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 24 TQLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred CHHHHHHHHCcCHHHHHHHHhCCCC
Confidence 4678999999999999999998765
No 223
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=31.19 E-value=16 Score=29.42 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCcchhhhccchhc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNAR 551 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR 551 (632)
...+||+.+|++...|..|..+++
T Consensus 33 sq~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 33 TQFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTCG
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 468899999999999999999887
No 224
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=31.03 E-value=25 Score=32.03 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006754 506 MPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 556 (632)
Q Consensus 506 ft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K 556 (632)
+++.+.+.|.-.|-.. | .-.+||+.||+++..|+.+....|.+.++
T Consensus 141 L~~~~r~vl~l~~~~g-~----s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-L----SYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp SCHHHHHHHHHHHTTC-C----CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-C----CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 6888888887766433 2 23689999999999999999888885444
No 225
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=30.65 E-value=4.8 Score=37.15 Aligned_cols=46 Identities=15% Similarity=0.468 Sum_probs=31.1
Q ss_pred cccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
...|.+|...-. ..++ . .|...|+..|+...+.. +. ..||.|+...
T Consensus 78 ~~~C~IC~~~~~---~pv~-~--~CgH~fC~~Ci~~~~~~-----~~--~~CP~Cr~~~ 123 (150)
T 1z6u_A 78 SFMCVCCQELVY---QPVT-T--ECFHNVCKDCLQRSFKA-----QV--FSCPACRHDL 123 (150)
T ss_dssp HTBCTTTSSBCS---SEEE-C--TTSCEEEHHHHHHHHHT-----TC--CBCTTTCCBC
T ss_pred CCEeecCChhhc---CCEE-c--CCCCchhHHHHHHHHHh-----CC--CcCCCCCccC
Confidence 357999987531 3333 3 39899999999866541 22 4799998765
No 226
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=30.44 E-value=21 Score=26.80 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006754 510 AVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 553 (632)
Q Consensus 510 Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k 553 (632)
|.+.|.-.+.. +. -.++|+.||+++..|+.+..+-+.+
T Consensus 3 e~~vl~l~~~g--~s----~~eIA~~l~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKLIDEG--YT----NHGISEKLHISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHHHHTS--CC----SHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CC----HHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45566553332 32 2589999999999999988877763
No 227
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.15 E-value=7.9 Score=30.61 Aligned_cols=47 Identities=21% Similarity=0.378 Sum_probs=31.6
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+...|.+|...- .+-+... .|...||..|+...+.. . -.||.|+...
T Consensus 14 ~~~~C~IC~~~~----~~p~~~~-~CgH~fC~~Ci~~~~~~------~--~~CP~Cr~~~ 60 (72)
T 2djb_A 14 PYILCSICKGYL----IDATTIT-ECLHTFCKSCIVRHFYY------S--NRCPKCNIVV 60 (72)
T ss_dssp GGGSCTTTSSCC----SSCEECS-SSCCEECHHHHHHHHHH------C--SSCTTTCCCC
T ss_pred CCCCCCCCChHH----HCcCEEC-CCCCHHHHHHHHHHHHc------C--CcCCCcCccc
Confidence 457899998753 2233344 38899999999865431 1 4699998754
No 228
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=30.14 E-value=42 Score=28.96 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006754 504 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 551 (632)
Q Consensus 504 ~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR 551 (632)
..|+.++...+...+... + ...+||+.||++...|..|++.-+
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHccc
Confidence 357889888777777543 3 357899999999999999997543
No 229
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=30.11 E-value=17 Score=28.88 Aligned_cols=49 Identities=18% Similarity=0.522 Sum_probs=32.6
Q ss_pred cccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcch
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k 295 (632)
.+...|.+|...- ...++ -. .|...||..|+...+.. . +. ..||.|+..
T Consensus 13 ~~~~~C~IC~~~~---~~p~~-~~-~CgH~fC~~Ci~~~~~~--~--~~--~~CP~Cr~~ 61 (74)
T 2yur_A 13 PDELLCLICKDIM---TDAVV-IP-CCGNSYCDECIRTALLE--S--DE--HTCPTCHQN 61 (74)
T ss_dssp CGGGSCSSSCCCC---TTCEE-CS-SSCCEECTTHHHHHHHH--S--SS--SCCSSSCCS
T ss_pred CCCCCCcCCChHH---hCCeE-cC-CCCCHHHHHHHHHHHHh--c--CC--CcCCCCCCc
Confidence 3457899998753 23343 33 28899999999876541 1 11 579999874
No 230
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.79 E-value=8.3 Score=29.50 Aligned_cols=46 Identities=28% Similarity=0.637 Sum_probs=29.7
Q ss_pred cccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcC
Q 006754 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFC 292 (632)
Q Consensus 236 ~e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C 292 (632)
.+...|.+|...- .+.+++ . |...||..|+...+.. .... ..||.|
T Consensus 18 ~~~~~C~IC~~~~---~~p~~~-~--CgH~fC~~Ci~~~~~~---~~~~--~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDIL---QKPVTI-D--CGHNFCLKCITQIGET---SCGF--FKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBC---SSCEEC-T--TSSEECHHHHHHHHHH---CSSC--CCCSCC
T ss_pred ccCCCCCcCCchh---CCeEEe-C--CCCcchHHHHHHHHHc---CCCC--CcCcCC
Confidence 3457899998763 234443 3 9999999999866531 1112 568877
No 231
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=29.58 E-value=18 Score=28.47 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~~~ 49 (84)
T 2ef8_A 25 SQSELAIFLGLSQSDISKIESFERR 49 (84)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 3678999999999999999998764
No 232
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=29.38 E-value=11 Score=31.55 Aligned_cols=48 Identities=17% Similarity=0.339 Sum_probs=32.5
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchhh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKME 297 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~~ 297 (632)
+...|.+|...- .+-+..- .|...||..|+...+. .. -.||.|+....
T Consensus 21 ~~~~C~IC~~~~----~~p~~~~-~CgH~fC~~Ci~~~~~------~~--~~CP~Cr~~~~ 68 (99)
T 2y43_A 21 DLLRCGICFEYF----NIAMIIP-QCSHNYCSLCIRKFLS------YK--TQCPTCCVTVT 68 (99)
T ss_dssp HHTBCTTTCSBC----SSEEECT-TTCCEEEHHHHHHHHT------TC--CBCTTTCCBCC
T ss_pred CCCCcccCChhh----CCcCEEC-CCCCHhhHHHHHHHHH------CC--CCCCCCCCcCC
Confidence 346799998763 2233343 3989999999986654 12 47999987553
No 233
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=29.00 E-value=19 Score=28.58 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 29 tq~elA~~~gis~~~is~~e~g~~~ 53 (83)
T 3f6w_A 29 TQKELAARLGRPQSFVSKTENAERR 53 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCC
Confidence 4678999999999999999998764
No 234
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.58 E-value=8.5 Score=32.70 Aligned_cols=48 Identities=19% Similarity=0.456 Sum_probs=31.4
Q ss_pred cccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
...|.+|...-. ..++ . .|...||..|+...+.. ..+. ..||.|+...
T Consensus 21 ~~~C~IC~~~~~---~p~~-~--~CgH~fC~~Ci~~~~~~---~~~~--~~CP~Cr~~~ 68 (112)
T 1jm7_A 21 ILECPICLELIK---EPVS-T--KCDHIFCKFCMLKLLNQ---KKGP--SQCPLCKNDI 68 (112)
T ss_dssp HTSCSSSCCCCS---SCCB-C--TTSCCCCSHHHHHHHHS---SSSS--CCCTTTSCCC
T ss_pred CCCCcccChhhc---CeEE-C--CCCCHHHHHHHHHHHHh---CCCC--CCCcCCCCcC
Confidence 357999987531 2233 2 38899999999866542 1122 6799998754
No 235
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=28.22 E-value=19 Score=28.32 Aligned_cols=25 Identities=4% Similarity=0.175 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 17 sq~~lA~~~gis~~~i~~~e~g~~~ 41 (77)
T 2k9q_A 17 TAKSVAEEMGISRQQLCNIEQSETA 41 (77)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTCCSC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 3578999999999999999998764
No 236
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=28.20 E-value=20 Score=28.64 Aligned_cols=25 Identities=12% Similarity=0.360 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 27 sq~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 27 TQSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 3678999999999999999998654
No 237
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.78 E-value=5.6 Score=31.83 Aligned_cols=52 Identities=23% Similarity=0.531 Sum_probs=31.8
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+...|.+|...-. ..+++ .|...||..|+...+.......+. ..||.|+...
T Consensus 18 ~~~~C~IC~~~~~---~p~~~---~CgH~fC~~Ci~~~~~~~~~~~~~--~~CP~Cr~~~ 69 (85)
T 2ecv_A 18 EEVTCPICLELLT---QPLSL---DCGHSFCQACLTANHKKSMLDKGE--SSCPVCRISY 69 (85)
T ss_dssp CCCCCTTTCSCCS---SCBCC---SSSCCBCTTHHHHHHHHHHHTTSC--CCCTTTCCSS
T ss_pred CCCCCCCCCcccC---CceeC---CCCCHHHHHHHHHHHHHhhcCCCC--CcCCCCCCcc
Confidence 4568999998632 23332 288899999997544310001122 6799998654
No 238
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=27.69 E-value=25 Score=33.59 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=21.4
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~~ 56 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGINA 56 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 5678999999999999999988654
No 239
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=27.03 E-value=28 Score=31.57 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCcchhhhccchhcc
Q 006754 529 KENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 529 r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+|+.||+++.++..|+...|.
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~Rq 95 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQARS 95 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCCB
T ss_pred HHHHHHHhCCCcccEEEEEeecCC
Confidence 478899999999999999998875
No 240
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=26.81 E-value=21 Score=29.25 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCcchhhhccchhcc
Q 006754 529 KENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 529 r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
..+||+.||++..-|..|+.+..-
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~i 36 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEI 36 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCC
Confidence 789999999999999999976444
No 241
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=26.34 E-value=21 Score=29.17 Aligned_cols=25 Identities=4% Similarity=0.268 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|+.+++.
T Consensus 23 tq~~lA~~~gis~~~is~~e~g~~~ 47 (94)
T 2ict_A 23 SLREFARAMEIAPSTASRLLTGKAA 47 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHTSSC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 4688999999999999999998764
No 242
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=26.21 E-value=22 Score=28.71 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 32 sq~~lA~~~gis~~~is~~e~g~~~ 56 (92)
T 1lmb_3 32 SQESVADKMGMGQSGVGALFNGINA 56 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4689999999999999999998754
No 243
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=26.13 E-value=29 Score=28.46 Aligned_cols=16 Identities=13% Similarity=0.588 Sum_probs=12.1
Q ss_pred CCCCCCCccccCcCcchhh
Q 006754 279 SIPPGDQGWFCKFCECKME 297 (632)
Q Consensus 279 ~iP~gd~~W~C~~C~~k~~ 297 (632)
.+|+ + |.||.|-....
T Consensus 36 ~lPd-d--w~CP~Cga~K~ 51 (70)
T 1dx8_A 36 DLSD-S--FMCPACRSPKN 51 (70)
T ss_dssp GSCT-T--CBCTTTCCBGG
T ss_pred hCCC-C--CcCCCCCCCHH
Confidence 5765 4 99999987653
No 244
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=25.99 E-value=21 Score=29.26 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHH
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 554 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~ 554 (632)
.+++.+.+.|...|--..- ....-.+||+.||++...|+.|....+.+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKL 66 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4789999999888852100 112346899999999999999887777643
No 245
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=25.83 E-value=80 Score=28.28 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
.|+.++...+...+... + ...+||+.||++...|..|++.-+.
T Consensus 25 ~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r~~~ 67 (159)
T 2k27_A 25 PLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGRYYE 67 (159)
T ss_dssp SSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCCSST
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 57888888777777543 2 4568999999999999999976543
No 246
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=25.74 E-value=23 Score=27.97 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 26 sq~~lA~~~gis~~~i~~~e~g~~~ 50 (82)
T 3s8q_A 26 TQEDLAYKSNLDRTYISGIERNSRN 50 (82)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCC
T ss_pred CHHHHHHHhCcCHHHHHHHHCCCCC
Confidence 4678999999999999999998764
No 247
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=25.63 E-value=23 Score=29.64 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
+..+||+.+|++...|..|..+++-
T Consensus 39 Tq~eLA~~~GiS~~tis~iE~G~~~ 63 (88)
T 3t76_A 39 KKGELREAVGVSKSTFAKLGKNENV 63 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCc
Confidence 5789999999999999999999764
No 248
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=25.58 E-value=32 Score=29.49 Aligned_cols=24 Identities=29% Similarity=0.650 Sum_probs=15.5
Q ss_pred ccCCCCCCCCCCCCCCccccCcCcchhhH
Q 006754 270 CLDPPLDTESIPPGDQGWFCKFCECKMEI 298 (632)
Q Consensus 270 CL~PPL~~~~iP~gd~~W~C~~C~~k~~~ 298 (632)
+-+.++. .+|+ + |.||.|-.....
T Consensus 57 ~pGT~fe--dlPd-d--W~CPvCga~K~~ 80 (87)
T 1s24_A 57 TPGTRFE--DIPD-D--WCCPDCGATKED 80 (87)
T ss_dssp CSCCCGG--GCCT-T--CCCSSSCCCGGG
T ss_pred CCCCChh--HCCC-C--CCCCCCCCCHHH
Confidence 3334444 6775 4 999999876543
No 249
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=25.12 E-value=26 Score=28.71 Aligned_cols=25 Identities=4% Similarity=0.030 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 19 tq~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 19 SRQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp CHHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3678999999999999999999775
No 250
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=24.84 E-value=1.1e+02 Score=27.29 Aligned_cols=40 Identities=10% Similarity=0.190 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCcch
Q 006754 503 FHRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSLEPEK 542 (632)
Q Consensus 503 r~rft~~Q~~~Le~~F~~-----~~YPs~~~r~~LA~~lgLt~~q 542 (632)
+..||++|++.|..+|.. +.+.+..+-..+-+.||+.+..
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPD 51 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCH
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccH
Confidence 356899999999999975 5899999998989999987765
No 251
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=24.83 E-value=66 Score=27.66 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC--CCcchhhhccchhcc
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELS--LEPEKVNKWFKNARY 552 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lg--Lt~~qV~iWFqNrR~ 552 (632)
.+++++...+... ..++.-+. .+||..|| ++...|..|+.....
T Consensus 60 ~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 4789988877777 55555444 57899999 688889999976554
No 252
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=24.68 E-value=39 Score=32.51 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006754 504 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 504 ~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
..||+.+.+.|.-.+. .+ .-.+||+.||+++..|+....|-+.
T Consensus 174 ~~Lt~~e~~vl~~~~~--g~----s~~eIa~~l~is~~tV~~~~~~~~~ 216 (236)
T 2q0o_A 174 QMLSPREMLCLVWASK--GK----TASVTANLTGINARTVQHYLDKARA 216 (236)
T ss_dssp GSCCHHHHHHHHHHHT--TC----CHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4589999999977543 22 3378999999999999999888777
No 253
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=24.65 E-value=26 Score=24.10 Aligned_cols=18 Identities=44% Similarity=0.957 Sum_probs=12.2
Q ss_pred cccCCCCCCCCCCCCCCccccCcCcc
Q 006754 269 KCLDPPLDTESIPPGDQGWFCKFCEC 294 (632)
Q Consensus 269 ~CL~PPL~~~~iP~gd~~W~C~~C~~ 294 (632)
+|.+|.- .|+ |.|-.|+.
T Consensus 9 fcpdpek------mgd--wccgrcir 26 (32)
T 4b2v_A 9 FCPDPEK------MGD--WCCGRCIR 26 (32)
T ss_dssp BCCCTTT------TCC--CCSSEEET
T ss_pred cCCChHH------hcc--hhhhHHHH
Confidence 5666542 277 99999964
No 254
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=24.58 E-value=26 Score=27.97 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCcchhhhccch
Q 006754 528 VKENLSKELSLEPEKVNKWFKN 549 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqN 549 (632)
.+.+||+.+|++...|..|..+
T Consensus 25 tq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 25 SLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 4578999999999999999998
No 255
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=23.98 E-value=47 Score=27.81 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 551 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR 551 (632)
.|+.++...+...+. ..+ ...+||+.||++...|..|+..-+
T Consensus 17 ~~s~~~r~~i~~~~~-~g~----s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA-DGI----RPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHHH-TTC----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 478888887777775 333 246799999999999999986433
No 256
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=23.47 E-value=25 Score=28.51 Aligned_cols=25 Identities=8% Similarity=0.309 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.+|++...|..|..+++.
T Consensus 28 sq~~lA~~~gis~~~is~~e~g~~~ 52 (91)
T 1x57_A 28 TQKDLATKINEKPQVIADYESGRAI 52 (91)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4678999999999999999998764
No 257
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.16 E-value=57 Score=24.48 Aligned_cols=43 Identities=16% Similarity=0.580 Sum_probs=27.4
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+...|.+|..... +-.++ .|...|+..|+.. .. ..||.|+...
T Consensus 5 ~~~~C~IC~~~~~--~p~~l----~CgH~fC~~Ci~~---------~~--~~CP~Cr~~~ 47 (56)
T 1bor_A 5 QFLRCQQCQAEAK--CPKLL----PCLHTLCSGCLEA---------SG--MQCPICQAPW 47 (56)
T ss_dssp CCSSCSSSCSSCB--CCSCS----TTSCCSBTTTCSS---------SS--SSCSSCCSSS
T ss_pred cCCCceEeCCccC--CeEEc----CCCCcccHHHHcc---------CC--CCCCcCCcEe
Confidence 4567999987542 12222 3777788888763 11 5799997654
No 258
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=22.84 E-value=28 Score=27.59 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=32.5
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+...|.+|...-. ..++ .. |...|+..|+...+. .+. ..||.|....
T Consensus 7 ~~~~C~IC~~~~~---~Pv~-~~--CgH~fc~~Ci~~~~~-----~~~--~~CP~C~~~~ 53 (78)
T 1t1h_A 7 EYFRCPISLELMK---DPVI-VS--TGQTYERSSIQKWLD-----AGH--KTCPKSQETL 53 (78)
T ss_dssp SSSSCTTTSCCCS---SEEE-ET--TTEEEEHHHHHHHHT-----TTC--CBCTTTCCBC
T ss_pred ccCCCCCcccccc---CCEE-cC--CCCeecHHHHHHHHH-----HCc--CCCCCCcCCC
Confidence 3578999997631 3333 33 999999999987654 123 6799998654
No 259
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=22.67 E-value=45 Score=25.73 Aligned_cols=16 Identities=31% Similarity=1.072 Sum_probs=11.8
Q ss_pred CCCCCCCccccCcCcchhh
Q 006754 279 SIPPGDQGWFCKFCECKME 297 (632)
Q Consensus 279 ~iP~gd~~W~C~~C~~k~~ 297 (632)
.+|+ + |.||.|-....
T Consensus 31 ~lP~-d--w~CP~Cg~~K~ 46 (52)
T 1yk4_A 31 DLPD-D--WVCPLCGAPKS 46 (52)
T ss_dssp GSCT-T--CBCTTTCCBGG
T ss_pred HCCC-C--CcCCCCCCCHH
Confidence 5665 3 99999987653
No 260
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=22.47 E-value=64 Score=27.72 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 556 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K 556 (632)
.+++.|.+.|.-.|..+.+ ....-.+||+.||++...|+......+.+.++
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4788899988888864322 12345789999999999999887777664443
No 261
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=22.06 E-value=59 Score=29.42 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006754 505 RMPPNAVEKLRQVFAE----NELPSRIVKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~----~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
-+|..++-.|-..+.. +++|+.. +||+.+|+++.+|....++--.
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHHHH
Confidence 4688888877777763 6788874 6999999999999998876443
No 262
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.04 E-value=1.1e+02 Score=27.00 Aligned_cols=47 Identities=15% Similarity=0.134 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh--------C--CCcchhhhccchhcc
Q 006754 503 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKEL--------S--LEPEKVNKWFKNARY 552 (632)
Q Consensus 503 r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~l--------g--Lt~~qV~iWFqNrR~ 552 (632)
...+++++...|...+.+++..+. .+||..| | ++...|..|+.....
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~---~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFA---WEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQ 144 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCH---HHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC--
T ss_pred CCCCCHHHHHHHHHHHHhCcchhH---HHHHHHHHHhcccccCCCcCHHHHHHHHHHHhc
Confidence 345789999999999988876654 3455655 6 678889988865443
No 263
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=21.95 E-value=58 Score=27.17 Aligned_cols=44 Identities=11% Similarity=0.171 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006754 503 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 503 r~rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...||+.+.+.|.-.+ ..| .-.+||..||+++..|+....+-+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~----s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGF----TNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4568999999998877 333 4678999999999999987766554
No 264
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=21.48 E-value=31 Score=28.65 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=21.8
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
...+||+.||++...|..|-.+++.
T Consensus 45 sq~elA~~lgvs~~~is~~E~G~~~ 69 (99)
T 2ppx_A 45 TQEEFSARYHIPLGTLRDWEQGRSE 69 (99)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 3578999999999999999988764
No 265
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=21.25 E-value=39 Score=26.39 Aligned_cols=17 Identities=35% Similarity=0.774 Sum_probs=12.3
Q ss_pred CCCCCCCccccCcCcchhhH
Q 006754 279 SIPPGDQGWFCKFCECKMEI 298 (632)
Q Consensus 279 ~iP~gd~~W~C~~C~~k~~~ 298 (632)
.+|+ + |.||.|-.....
T Consensus 32 ~lP~-d--w~CP~Cga~K~~ 48 (55)
T 2v3b_B 32 DIPA-D--WVCPDCGVGKID 48 (55)
T ss_dssp GSCT-T--CCCTTTCCCGGG
T ss_pred HCCC-C--CcCCCCCCCHHH
Confidence 5665 4 999999876543
No 266
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=21.23 E-value=32 Score=27.39 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCcchhhhccchhc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNAR 551 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR 551 (632)
...+||+.+|++...|..|..+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 567999999999999999999887
No 267
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=21.11 E-value=33 Score=27.78 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcchhhhccchhcc
Q 006754 528 VKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
+..+||+.+|++...|..|-.+++.
T Consensus 29 tq~elA~~~gis~~~is~~E~G~~~ 53 (86)
T 3eus_A 29 TQADLAERLDKPQSFVAKVETRERR 53 (86)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHCCCCC
Confidence 4578999999999999999998875
No 268
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=21.06 E-value=57 Score=28.81 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhc
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 551 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR 551 (632)
.|+.++.......+.. .+ ...+||+.||++...|..|+..-+
T Consensus 32 ~~s~e~r~~iv~~~~~-G~----s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 32 PLPDVVRQRIVELAHQ-GV----RPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5789888877777753 33 356799999999999999987543
No 269
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.92 E-value=15 Score=28.30 Aligned_cols=47 Identities=21% Similarity=0.516 Sum_probs=31.7
Q ss_pred ccccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchh
Q 006754 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (632)
Q Consensus 237 e~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~ 296 (632)
+...|.+|...-. +.++ - .|...||..|+...+. ... ..||.|+...
T Consensus 14 ~~~~C~IC~~~~~---~p~~--~-~CgH~fC~~Ci~~~~~-----~~~--~~CP~Cr~~~ 60 (66)
T 2ecy_A 14 DKYKCEKCHLVLC---SPKQ--T-ECGHRFCESCMAALLS-----SSS--PKCTACQESI 60 (66)
T ss_dssp CCEECTTTCCEES---SCCC--C-SSSCCCCHHHHHHHHT-----TSS--CCCTTTCCCC
T ss_pred cCCCCCCCChHhc---CeeE--C-CCCCHHHHHHHHHHHH-----hCc--CCCCCCCcCC
Confidence 4577999987532 2233 2 3888999999987653 122 5799997654
No 270
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=20.84 E-value=1.1e+02 Score=25.47 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCC--Ccchhhhccc
Q 006754 502 SFHRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSL--EPEKVNKWFK 548 (632)
Q Consensus 502 ~r~rft~~Q~~~Le~~F~~-----~~YPs~~~r~~LA~~lgL--t~~qV~iWFq 548 (632)
....++.+|++.|..+|.. +.|.+..+-..+-+.+|+ +..+|..+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3456899999999999965 489999999998888885 5666777775
No 271
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=20.68 E-value=21 Score=33.37 Aligned_cols=44 Identities=5% Similarity=0.037 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhccH
Q 006754 505 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 553 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k 553 (632)
.+++.+.+.|.-.|-. ...-.+||+.||+++..|+.++...|.+
T Consensus 198 ~L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 198 ELDERERLIVYLRYYK-----DQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp -------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhc-----CCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3677777777775532 2455789999999999999998877763
No 272
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=20.54 E-value=33 Score=26.08 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=21.7
Q ss_pred HHHHHHHHhC--CCcchhhhccchhcc
Q 006754 528 VKENLSKELS--LEPEKVNKWFKNARY 552 (632)
Q Consensus 528 ~r~~LA~~lg--Lt~~qV~iWFqNrR~ 552 (632)
...+||+.+| ++...|..|..+++.
T Consensus 23 sq~~lA~~~g~~is~~~i~~~e~g~~~ 49 (71)
T 2ewt_A 23 SLHGVEEKSQGRWKAVVVGSYERGDRA 49 (71)
T ss_dssp CHHHHHHHTTTSSCHHHHHHHHHTCSC
T ss_pred CHHHHHHHHCCcCCHHHHHHHHCCCCC
Confidence 4678999999 999999999988764
No 273
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=20.42 E-value=55 Score=27.71 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=26.8
Q ss_pred ccccccccCCCCCCCCeEEeCCCCCccccccccCCCCC
Q 006754 239 IICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLD 276 (632)
Q Consensus 239 ~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~ 276 (632)
..|.+|+... .+-+-.|. .|+-..|..|...|..
T Consensus 48 ~~C~~C~~~~---~~~~Y~C~-~C~f~lH~~Ca~~p~~ 81 (89)
T 1v5n_A 48 YTCDKCEEEG---TIWSYHCD-ECDFDLHAKCALNEDT 81 (89)
T ss_dssp CCCTTTSCCC---CSCEEECT-TTCCCCCHHHHHCSSC
T ss_pred eEeCCCCCcC---CCcEEEcC-CCCCeEcHHhcCCCCc
Confidence 4699998863 36678899 6999999999876643
No 274
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=20.25 E-value=47 Score=26.69 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCcchhhhccch
Q 006754 504 HRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSLEPEKVNKWFKN 549 (632)
Q Consensus 504 ~rft~~Q~~~Le~~F~~-----~~YPs~~~r~~LA~~lgLt~~qV~iWFqN 549 (632)
..++.++...|..+|.. +.|.+..+-..+-..+|++..+|..+|..
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~ 69 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQR 69 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHH
Confidence 34688999999999964 57899998888889999998888888753
No 275
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.19 E-value=38 Score=29.60 Aligned_cols=40 Identities=13% Similarity=0.240 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcchhhhccchhcc
Q 006754 506 MPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 552 (632)
Q Consensus 506 ft~~Q~~~Le~~F~~~~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~ 552 (632)
++++++..|..... -.+.+||+.||++...|..|-.+++.
T Consensus 71 ~~~~~l~~~R~~~g-------lsq~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 71 VAPEFIVKVRKKLS-------LTQKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp CCHHHHHHHHHHTT-------CCHHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHcC-------CCHHHHHHHHCCCHHHHHHHHCCCCC
Confidence 56777777765543 34678999999999999999998764
No 276
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=20.15 E-value=61 Score=26.40 Aligned_cols=44 Identities=7% Similarity=0.097 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCcchhhhccc
Q 006754 505 RMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSLEPEKVNKWFK 548 (632)
Q Consensus 505 rft~~Q~~~Le~~F~~-----~~YPs~~~r~~LA~~lgLt~~qV~iWFq 548 (632)
.+++++...|...|.. +.|.+..+-..+-..+|++..+|..+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3688999999999975 5788888888888889999888887665
No 277
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=20.13 E-value=17 Score=32.87 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCcchhhhccchhccHHHH
Q 006754 506 MPPNAVEKLRQVFAEN-ELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 556 (632)
Q Consensus 506 ft~~Q~~~Le~~F~~~-~YPs~~~r~~LA~~lgLt~~qV~iWFqNrR~k~~K 556 (632)
+++.+.+.|.-.|-+. .| .+||+.||+++..|+.+....|.+.++
T Consensus 136 L~~~~r~vl~l~~~~g~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDLTH------RELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCHHHHHHHHHHHHSCCSS------CCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCH------HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 6888888888765433 43 468999999999999999888875443
No 278
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=20.13 E-value=36 Score=31.83 Aligned_cols=54 Identities=20% Similarity=0.445 Sum_probs=34.5
Q ss_pred cccccccccCCCCCCCCeEEeCCCCCccccccccCCCCCCCCCCCCCCccccCcCcchhhHh
Q 006754 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKMEII 299 (632)
Q Consensus 238 ~~~C~vC~~~~~~~~g~lLlCDG~C~rafH~~CL~PPL~~~~iP~gd~~W~C~~C~~k~~~~ 299 (632)
...|..|..+-..-.+.-..|- .|..-+-..|-.- ..+.. .|.|..|...+.+.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~-~C~~~VC~~C~~~-----~~~~~--~W~C~vC~k~rel~ 121 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCL-ECSLFVCKSCSHA-----HPEEQ--GWLCDPCHLARVVK 121 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECT-TTCCEECGGGEEC-----CSSSS--SCEEHHHHHHHHHH
T ss_pred CccchhhcCccccccCCCCcCC-CCCchhhcccccc-----cCCCC--cEeeHHHHHHHHHH
Confidence 4678888886323334555666 3887777777641 11233 49999998887643
Done!