BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006756
         (632 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4E8U|A Chain A, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With
           A Small Segment Of Adjacent Coiled-Coil Region
 pdb|4E8U|C Chain C, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With
           A Small Segment Of Adjacent Coiled-Coil Region
          Length = 172

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 95/160 (59%), Gaps = 5/160 (3%)

Query: 118 VWPWMGIIVNI-VMETKDRGSFLDSGYWLKRFAV---FKPVEVRIFWNEENPTAQAVVKF 173
           V+PW GI+VNI   + +D  S  +SG  L+   +   F P  VR  WN    +  A+V+F
Sbjct: 10  VYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEF 69

Query: 174 NNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQ 233
           N DWNG      F+KA+  D  GK+ W+ +K+ P L +YGW ARADD      IGE LR+
Sbjct: 70  NKDWNGLHNGLLFDKAYTVDGHGKKDWL-KKDGPKLGLYGWIARADDYNGNNIIGENLRK 128

Query: 234 EGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQ 273
            G L+T++++ +E+A+ +  +V +L   ++ K +D+ E++
Sbjct: 129 TGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIE 168


>pdb|4E9L|A Chain A, Fdec, A Novel Broadly Conserved Escherichia Coli Adhesin
           Eliciting Protection Against Urinary Tract Infections
          Length = 420

 Score = 32.3 bits (72), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 408 DAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDEL---ESKI----DDLDEME 460
           D     ++ +    G+L+VM  L  +D AA   K+  + D L   +SK+    D +   E
Sbjct: 151 DGTWTAQISLGTTAGELDVMPKLNGQDAAANAAKVTVVADALSSNQSKVSVAEDHVKAGE 210

Query: 461 SLNKTLIAKERQSN 474
           S   TL+AK+   N
Sbjct: 211 STTVTLVAKDAHGN 224


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,748,014
Number of Sequences: 62578
Number of extensions: 742561
Number of successful extensions: 2082
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 1968
Number of HSP's gapped (non-prelim): 155
length of query: 632
length of database: 14,973,337
effective HSP length: 105
effective length of query: 527
effective length of database: 8,402,647
effective search space: 4428194969
effective search space used: 4428194969
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)