Query 006756
Match_columns 632
No_of_seqs 163 out of 183
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 14:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03469 XH: XH domain; Inter 100.0 1E-64 2.2E-69 468.5 13.6 131 501-631 1-132 (132)
2 PF03468 XS: XS domain; Inter 100.0 1.4E-45 3E-50 336.1 4.6 114 113-227 1-116 (116)
3 PF03470 zf-XS: XS zinc finger 99.7 6.6E-19 1.4E-23 134.4 2.8 43 42-84 1-43 (43)
4 PF07888 CALCOCO1: Calcium bin 97.0 0.29 6.3E-06 56.1 25.0 33 396-428 264-296 (546)
5 TIGR02169 SMC_prok_A chromosom 96.7 2.2 4.7E-05 51.8 31.6 7 141-147 118-124 (1164)
6 PF07888 CALCOCO1: Calcium bin 96.7 1.8 3.8E-05 49.9 29.7 68 231-298 149-216 (546)
7 KOG0161 Myosin class II heavy 96.4 2.2 4.7E-05 55.5 29.8 219 210-431 782-1036(1930)
8 COG1196 Smc Chromosome segrega 96.4 4.1 9E-05 50.8 31.5 153 437-591 443-632 (1163)
9 PF10174 Cast: RIM-binding pro 96.4 1.3 2.9E-05 53.0 26.0 218 255-483 401-635 (775)
10 KOG0996 Structural maintenance 96.4 3.2 6.8E-05 51.3 29.0 109 251-359 375-489 (1293)
11 TIGR02169 SMC_prok_A chromosom 96.3 4.2 9.2E-05 49.4 32.2 6 558-563 604-609 (1164)
12 KOG0161 Myosin class II heavy 96.0 8.2 0.00018 50.6 31.6 47 412-462 1038-1084(1930)
13 KOG4643 Uncharacterized coiled 95.9 4.6 0.0001 49.3 26.7 86 326-411 413-501 (1195)
14 PRK11637 AmiB activator; Provi 95.5 3.2 6.9E-05 46.0 22.7 43 314-356 170-212 (428)
15 KOG0971 Microtubule-associated 95.3 7.4 0.00016 47.2 25.7 113 262-385 260-387 (1243)
16 PRK11637 AmiB activator; Provi 95.3 6 0.00013 43.8 28.0 48 382-429 168-215 (428)
17 KOG0612 Rho-associated, coiled 95.1 13 0.00029 46.4 28.1 188 273-466 493-693 (1317)
18 PF12128 DUF3584: Protein of u 95.0 13 0.00028 46.8 28.5 226 253-484 281-520 (1201)
19 PF15066 CAGE1: Cancer-associa 94.9 1.8 3.9E-05 48.8 18.2 65 331-395 442-508 (527)
20 KOG0996 Structural maintenance 94.8 15 0.00033 45.8 29.3 65 250-314 303-367 (1293)
21 KOG0976 Rho/Rac1-interacting s 94.8 13 0.00028 44.8 27.5 131 316-457 258-399 (1265)
22 KOG0250 DNA repair protein RAD 94.7 15 0.00033 45.4 27.0 53 436-488 867-921 (1074)
23 COG1196 Smc Chromosome segrega 94.7 17 0.00036 45.7 31.7 12 83-94 40-51 (1163)
24 TIGR02168 SMC_prok_B chromosom 94.2 18 0.00039 43.9 32.1 18 584-601 634-651 (1179)
25 PF15619 Lebercilin: Ciliary p 94.0 7.7 0.00017 39.2 21.7 136 288-472 57-193 (194)
26 KOG1853 LIS1-interacting prote 93.9 10 0.00022 40.2 20.2 158 292-485 20-181 (333)
27 KOG0579 Ste20-like serine/thre 93.8 19 0.00041 42.9 26.4 216 229-467 789-1022(1187)
28 KOG0250 DNA repair protein RAD 93.6 25 0.00055 43.6 29.8 67 249-315 224-304 (1074)
29 PHA02562 46 endonuclease subun 93.5 16 0.00035 41.3 26.9 34 391-424 313-346 (562)
30 PF09726 Macoilin: Transmembra 93.5 12 0.00027 44.5 22.5 43 259-301 459-501 (697)
31 PF08317 Spc7: Spc7 kinetochor 93.3 6.2 0.00013 42.5 18.2 41 390-430 250-291 (325)
32 KOG4674 Uncharacterized conser 93.1 39 0.00084 44.3 29.7 169 252-424 1242-1424(1822)
33 KOG0933 Structural maintenance 92.9 30 0.00064 42.8 24.2 47 396-446 887-933 (1174)
34 KOG0964 Structural maintenance 92.8 31 0.00067 42.6 24.2 42 440-485 432-473 (1200)
35 PRK02224 chromosome segregatio 92.8 28 0.0006 41.9 27.8 13 395-407 346-358 (880)
36 PF05911 DUF869: Plant protein 92.5 30 0.00065 41.9 23.8 95 243-341 75-172 (769)
37 COG1382 GimC Prefoldin, chaper 92.5 2.1 4.6E-05 40.3 11.5 93 394-491 9-114 (119)
38 PRK09039 hypothetical protein; 92.4 17 0.00036 39.7 20.2 28 474-501 189-216 (343)
39 TIGR00606 rad50 rad50. This fa 92.4 40 0.00087 42.9 30.3 9 530-538 1145-1153(1311)
40 KOG4674 Uncharacterized conser 92.3 48 0.001 43.6 27.3 73 392-474 1308-1380(1822)
41 TIGR00606 rad50 rad50. This fa 92.2 42 0.00091 42.7 26.5 58 396-457 869-926 (1311)
42 KOG0239 Kinesin (KAR3 subfamil 91.5 11 0.00025 44.6 18.8 205 250-501 111-319 (670)
43 KOG0933 Structural maintenance 91.3 46 0.001 41.3 24.3 106 251-356 242-347 (1174)
44 KOG1029 Endocytic adaptor prot 89.9 54 0.0012 39.8 28.1 71 384-457 479-566 (1118)
45 PF05483 SCP-1: Synaptonemal c 89.1 58 0.0012 39.0 25.0 136 274-409 485-633 (786)
46 KOG0982 Centrosomal protein Nu 87.7 55 0.0012 37.1 21.3 174 239-418 204-394 (502)
47 PF05701 WEMBL: Weak chloropla 87.6 60 0.0013 37.4 31.1 95 250-345 169-263 (522)
48 KOG0980 Actin-binding protein 87.4 81 0.0018 38.7 25.7 37 504-545 615-651 (980)
49 PF15272 BBP1_C: Spindle pole 87.3 37 0.0008 34.7 18.1 134 246-408 12-149 (196)
50 KOG0612 Rho-associated, coiled 86.8 1E+02 0.0022 39.2 25.7 52 558-610 965-1022(1317)
51 PF05605 zf-Di19: Drought indu 86.6 0.36 7.8E-06 38.6 1.4 23 38-64 1-23 (54)
52 KOG1937 Uncharacterized conser 86.3 25 0.00054 40.0 15.6 89 398-493 307-396 (521)
53 PF05701 WEMBL: Weak chloropla 86.2 71 0.0015 36.8 29.7 39 390-428 217-262 (522)
54 COG1340 Uncharacterized archae 86.2 54 0.0012 35.5 21.2 93 395-491 135-240 (294)
55 PRK04863 mukB cell division pr 86.0 1.2E+02 0.0027 39.5 34.1 29 433-461 435-463 (1486)
56 KOG4572 Predicted DNA-binding 84.0 1E+02 0.0022 37.8 19.6 96 258-353 920-1038(1424)
57 KOG0971 Microtubule-associated 84.0 1.2E+02 0.0026 37.6 26.8 105 450-559 511-619 (1243)
58 PF15070 GOLGA2L5: Putative go 83.2 1.1E+02 0.0023 36.4 23.0 33 246-278 29-61 (617)
59 PF00076 RRM_1: RNA recognitio 82.9 2.9 6.3E-05 32.9 5.1 54 123-185 1-57 (70)
60 PF10174 Cast: RIM-binding pro 82.6 1.3E+02 0.0027 36.8 26.3 213 236-460 319-534 (775)
61 PF09726 Macoilin: Transmembra 82.5 1.1E+02 0.0023 36.9 19.7 12 397-408 551-562 (697)
62 KOG0994 Extracellular matrix g 82.5 1.5E+02 0.0033 37.7 24.6 39 227-266 1497-1535(1758)
63 KOG0978 E3 ubiquitin ligase in 82.0 1.3E+02 0.0027 36.4 26.3 100 326-432 515-625 (698)
64 PF13851 GAS: Growth-arrest sp 81.0 29 0.00064 35.1 12.6 86 250-342 83-168 (201)
65 KOG0994 Extracellular matrix g 80.6 1.8E+02 0.0038 37.2 26.5 61 226-286 1479-1544(1758)
66 KOG0977 Nuclear envelope prote 80.5 1.3E+02 0.0027 35.4 19.6 135 280-428 203-337 (546)
67 PF00038 Filament: Intermediat 80.0 83 0.0018 33.0 21.7 64 390-460 215-282 (312)
68 PF05667 DUF812: Protein of un 79.9 1.4E+02 0.0029 35.4 22.1 34 382-425 496-529 (594)
69 PF05010 TACC: Transforming ac 79.5 79 0.0017 32.5 19.3 127 239-369 52-181 (207)
70 PF00261 Tropomyosin: Tropomyo 79.4 80 0.0017 32.5 23.0 35 252-286 35-69 (237)
71 KOG1853 LIS1-interacting prote 79.1 95 0.0021 33.2 19.2 40 383-422 132-171 (333)
72 PF10186 Atg14: UV radiation r 78.7 83 0.0018 32.3 16.2 19 528-546 204-222 (302)
73 KOG0249 LAR-interacting protei 78.4 1.5E+02 0.0033 35.9 18.5 114 215-334 62-180 (916)
74 PRK03918 chromosome segregatio 78.1 1.6E+02 0.0035 35.4 30.7 7 85-91 41-47 (880)
75 KOG0964 Structural maintenance 77.7 2E+02 0.0043 36.1 24.6 117 213-345 631-755 (1200)
76 KOG4807 F-actin binding protei 77.4 1.3E+02 0.0029 34.0 19.8 79 390-482 462-540 (593)
77 PF05010 TACC: Transforming ac 77.3 92 0.002 32.1 25.5 91 251-341 7-100 (207)
78 PF14259 RRM_6: RNA recognitio 76.5 5.9 0.00013 31.8 5.0 57 123-188 1-60 (70)
79 PRK00409 recombination and DNA 76.3 51 0.0011 39.9 14.7 78 313-403 519-596 (782)
80 KOG0018 Structural maintenance 76.2 2.2E+02 0.0048 35.9 24.6 117 210-336 628-754 (1141)
81 KOG0962 DNA repair protein RAD 75.1 2.6E+02 0.0056 36.1 25.2 72 351-429 828-899 (1294)
82 KOG0239 Kinesin (KAR3 subfamil 74.0 90 0.002 37.4 15.7 26 405-430 297-322 (670)
83 KOG0946 ER-Golgi vesicle-tethe 73.7 2.3E+02 0.005 34.9 23.3 49 226-274 630-678 (970)
84 KOG1103 Predicted coiled-coil 72.4 1.7E+02 0.0036 32.7 18.2 14 341-354 138-151 (561)
85 PRK04778 septation ring format 72.4 2E+02 0.0043 33.6 28.1 104 381-484 314-427 (569)
86 smart00787 Spc7 Spc7 kinetocho 71.5 1.6E+02 0.0034 32.1 18.8 22 410-431 248-269 (312)
87 PRK04778 septation ring format 71.5 2.1E+02 0.0045 33.4 26.5 63 234-296 274-339 (569)
88 PTZ00121 MAEBL; Provisional 71.2 3.4E+02 0.0073 35.8 25.5 71 285-359 1570-1640(2084)
89 COG1579 Zn-ribbon protein, pos 71.2 1.4E+02 0.0031 31.4 20.5 42 382-423 115-157 (239)
90 PRK04863 mukB cell division pr 70.8 3.4E+02 0.0074 35.7 27.1 26 437-462 446-471 (1486)
91 smart00362 RRM_2 RNA recogniti 70.2 9.8 0.00021 29.0 4.8 46 123-176 2-49 (72)
92 PLN03229 acetyl-coenzyme A car 69.6 2.7E+02 0.0058 34.0 21.2 59 397-455 648-710 (762)
93 KOG0995 Centromere-associated 68.7 2.5E+02 0.0053 33.2 27.4 51 226-279 204-254 (581)
94 TIGR01069 mutS2 MutS2 family p 68.6 86 0.0019 38.0 14.2 36 322-357 516-551 (771)
95 PF08702 Fib_alpha: Fibrinogen 67.9 81 0.0018 30.6 11.4 58 248-305 31-91 (146)
96 PF10498 IFT57: Intra-flagella 67.2 1.8E+02 0.0038 32.4 15.1 41 295-342 226-266 (359)
97 PRK03918 chromosome segregatio 66.0 3E+02 0.0065 33.2 30.9 6 515-520 441-446 (880)
98 PRK00106 hypothetical protein; 65.5 2.8E+02 0.006 32.6 22.2 54 370-423 162-219 (535)
99 PF00261 Tropomyosin: Tropomyo 65.1 1.7E+02 0.0037 30.1 21.7 46 437-482 173-218 (237)
100 PF10481 CENP-F_N: Cenp-F N-te 65.0 1.1E+02 0.0024 33.0 12.5 100 354-460 30-129 (307)
101 PRK12704 phosphodiesterase; Pr 64.6 2.8E+02 0.006 32.3 22.8 55 370-424 147-205 (520)
102 TIGR01069 mutS2 MutS2 family p 64.6 1.7E+02 0.0036 35.7 15.5 50 311-360 512-561 (771)
103 PF06705 SF-assemblin: SF-asse 64.2 1.8E+02 0.0039 30.0 21.3 153 274-449 85-238 (247)
104 KOG2412 Nuclear-export-signal 64.0 2.4E+02 0.0051 33.2 15.6 47 311-359 198-246 (591)
105 KOG1029 Endocytic adaptor prot 63.0 3.7E+02 0.008 33.2 23.3 14 412-425 448-461 (1118)
106 PF04065 Not3: Not1 N-terminal 62.7 2E+02 0.0044 30.1 16.2 142 258-424 6-152 (233)
107 PF04880 NUDE_C: NUDE protein, 62.3 12 0.00026 37.2 4.7 28 395-422 11-38 (166)
108 PHA02562 46 endonuclease subun 62.2 2.8E+02 0.006 31.5 28.4 26 245-270 173-198 (562)
109 KOG0804 Cytoplasmic Zn-finger 61.8 3E+02 0.0065 31.7 16.2 22 217-238 278-299 (493)
110 TIGR03319 YmdA_YtgF conserved 61.5 3.1E+02 0.0067 31.8 22.6 55 370-424 141-199 (514)
111 KOG0163 Myosin class VI heavy 60.9 4E+02 0.0087 32.9 19.4 10 210-219 822-831 (1259)
112 PF05622 HOOK: HOOK protein; 60.9 2.8 6E-05 49.6 0.0 66 397-465 536-601 (713)
113 PF07106 TBPIP: Tat binding pr 60.8 57 0.0012 31.7 9.0 78 395-483 76-153 (169)
114 PF03962 Mnd1: Mnd1 family; I 60.2 1.9E+02 0.0042 29.0 13.0 60 409-468 77-138 (188)
115 COG0419 SbcC ATPase involved i 60.1 4.1E+02 0.0088 32.7 28.9 32 400-431 680-712 (908)
116 PF10168 Nup88: Nuclear pore c 59.7 3.9E+02 0.0085 32.4 17.7 67 267-333 551-623 (717)
117 PRK09039 hypothetical protein; 59.5 2.7E+02 0.0059 30.5 17.8 47 252-298 59-105 (343)
118 PRK00409 recombination and DNA 59.0 2.1E+02 0.0045 34.9 15.0 70 245-318 512-581 (782)
119 KOG1937 Uncharacterized conser 58.4 3.4E+02 0.0075 31.3 19.3 47 311-357 360-411 (521)
120 PF05557 MAD: Mitotic checkpoi 57.9 3.4 7.3E-05 49.0 0.0 93 391-483 288-393 (722)
121 PF09731 Mitofilin: Mitochondr 57.5 3.6E+02 0.0077 31.2 21.6 23 392-414 379-401 (582)
122 PF04012 PspA_IM30: PspA/IM30 56.8 2.2E+02 0.0048 28.6 23.7 161 290-463 24-188 (221)
123 PF10168 Nup88: Nuclear pore c 56.7 4.4E+02 0.0095 32.0 17.7 27 329-355 637-663 (717)
124 KOG0995 Centromere-associated 56.3 4.1E+02 0.0088 31.5 26.3 89 253-341 266-363 (581)
125 KOG4643 Uncharacterized coiled 56.3 5.2E+02 0.011 32.8 28.7 36 208-243 284-319 (1195)
126 KOG0979 Structural maintenance 56.2 5.2E+02 0.011 32.7 26.4 93 173-291 119-212 (1072)
127 smart00030 CLb CLUSTERIN Beta 55.4 52 0.0011 33.8 7.8 36 378-413 44-79 (206)
128 PF05667 DUF812: Protein of un 55.1 4.3E+02 0.0093 31.4 26.9 214 250-484 325-556 (594)
129 TIGR01661 ELAV_HUD_SF ELAV/HuD 54.8 20 0.00044 37.7 5.2 51 122-180 271-325 (352)
130 PF05262 Borrelia_P83: Borreli 53.9 4.1E+02 0.0089 30.9 16.4 21 185-205 108-128 (489)
131 KOG4673 Transcription factor T 53.7 4.9E+02 0.011 31.7 26.1 31 243-273 343-373 (961)
132 PRK09343 prefoldin subunit bet 53.2 2E+02 0.0043 26.9 12.1 80 407-491 27-115 (121)
133 PF12128 DUF3584: Protein of u 53.1 6E+02 0.013 32.5 35.3 43 553-595 894-936 (1201)
134 PF15254 CCDC14: Coiled-coil d 53.0 5.2E+02 0.011 31.8 18.1 93 377-488 455-548 (861)
135 cd07651 F-BAR_PombeCdc15_like 52.6 2.7E+02 0.0059 28.4 18.6 106 311-425 108-214 (236)
136 PF15619 Lebercilin: Ciliary p 52.5 2.7E+02 0.0058 28.3 16.1 22 254-275 62-83 (194)
137 PF04012 PspA_IM30: PspA/IM30 52.5 2.6E+02 0.0056 28.1 16.8 11 564-574 209-220 (221)
138 PF13894 zf-C2H2_4: C2H2-type 52.2 8.8 0.00019 24.3 1.3 20 40-62 1-20 (24)
139 KOG0976 Rho/Rac1-interacting s 51.4 5.7E+02 0.012 31.8 24.4 29 328-356 173-201 (1265)
140 PF14915 CCDC144C: CCDC144C pr 51.4 3.6E+02 0.0079 29.5 14.7 108 244-351 170-301 (305)
141 PF06637 PV-1: PV-1 protein (P 51.2 4.1E+02 0.009 30.1 14.4 107 249-355 281-387 (442)
142 COG2433 Uncharacterized conser 50.8 2.9E+02 0.0063 33.0 13.7 36 385-420 444-479 (652)
143 COG2433 Uncharacterized conser 50.8 1.8E+02 0.0039 34.6 12.1 37 391-430 474-510 (652)
144 PLN03120 nucleic acid binding 50.8 24 0.00053 37.4 4.9 59 122-189 6-65 (260)
145 PF15070 GOLGA2L5: Putative go 50.4 5.1E+02 0.011 30.9 23.7 18 275-292 30-47 (617)
146 PRK12704 phosphodiesterase; Pr 49.0 4.9E+02 0.011 30.3 20.6 34 538-577 273-306 (520)
147 COG1579 Zn-ribbon protein, pos 48.8 3.5E+02 0.0076 28.6 19.3 13 530-542 175-187 (239)
148 PF04111 APG6: Autophagy prote 48.8 2.9E+02 0.0062 30.0 12.8 54 495-554 150-203 (314)
149 PLN03121 nucleic acid binding 48.3 30 0.00064 36.5 5.0 61 120-189 5-66 (243)
150 COG1842 PspA Phage shock prote 47.8 3.5E+02 0.0075 28.2 18.7 42 288-329 23-64 (225)
151 PF11559 ADIP: Afadin- and alp 46.4 2.7E+02 0.0058 26.5 13.8 99 296-425 52-150 (151)
152 PF00769 ERM: Ezrin/radixin/mo 46.2 3.7E+02 0.0081 28.1 15.2 66 294-359 14-85 (246)
153 PF05483 SCP-1: Synaptonemal c 45.6 6.4E+02 0.014 30.7 29.6 36 251-286 238-273 (786)
154 COG4942 Membrane-bound metallo 45.1 5.3E+02 0.011 29.5 21.7 41 412-456 214-254 (420)
155 KOG0577 Serine/threonine prote 45.0 6.5E+02 0.014 30.6 24.5 69 235-303 464-538 (948)
156 KOG0977 Nuclear envelope prote 44.9 5.9E+02 0.013 30.1 27.4 52 390-441 175-230 (546)
157 KOG0963 Transcription factor/C 44.7 6.3E+02 0.014 30.3 26.0 38 391-431 310-360 (629)
158 KOG2129 Uncharacterized conser 44.6 5E+02 0.011 29.9 13.8 90 239-328 166-271 (552)
159 COG1842 PspA Phage shock prote 44.5 3.9E+02 0.0084 27.8 22.1 47 254-300 18-64 (225)
160 PF12325 TMF_TATA_bd: TATA ele 44.2 2.3E+02 0.0051 26.8 9.9 46 411-467 71-116 (120)
161 PRK06569 F0F1 ATP synthase sub 44.2 3.3E+02 0.0072 26.9 14.7 45 341-398 87-131 (155)
162 PF11068 YlqD: YlqD protein; 44.2 97 0.0021 29.7 7.4 86 320-428 19-104 (131)
163 COG0419 SbcC ATPase involved i 44.0 7.1E+02 0.015 30.7 30.5 33 390-422 423-455 (908)
164 PRK00106 hypothetical protein; 42.9 6.2E+02 0.013 29.8 18.1 9 333-341 113-121 (535)
165 PRK12705 hypothetical protein; 42.6 6.1E+02 0.013 29.6 20.7 63 326-390 93-155 (508)
166 PRK10884 SH3 domain-containing 41.2 3.1E+02 0.0067 28.2 11.0 23 312-334 134-156 (206)
167 KOG0946 ER-Golgi vesicle-tethe 40.6 8.2E+02 0.018 30.5 21.4 44 437-480 796-839 (970)
168 PF07111 HCR: Alpha helical co 40.6 7.6E+02 0.017 30.1 21.8 163 258-466 61-223 (739)
169 PF05769 DUF837: Protein of un 40.6 4E+02 0.0086 26.8 19.1 39 296-334 45-94 (181)
170 PF15236 CCDC66: Coiled-coil d 40.5 3.8E+02 0.0083 26.7 15.6 98 214-311 15-117 (157)
171 PF08702 Fib_alpha: Fibrinogen 40.4 3.5E+02 0.0077 26.2 14.7 67 249-315 53-120 (146)
172 TIGR02894 DNA_bind_RsfA transc 40.0 4E+02 0.0086 26.7 11.8 57 410-484 99-155 (161)
173 PF09744 Jnk-SapK_ap_N: JNK_SA 39.7 3.9E+02 0.0084 26.5 16.7 132 255-407 24-155 (158)
174 PF00096 zf-C2H2: Zinc finger, 39.1 16 0.00034 23.7 0.9 20 40-62 1-20 (23)
175 PF08317 Spc7: Spc7 kinetochor 39.1 5.3E+02 0.011 27.9 21.8 17 326-342 133-149 (325)
176 PRK14143 heat shock protein Gr 38.2 3E+02 0.0065 29.0 10.5 34 326-359 76-109 (238)
177 KOG4360 Uncharacterized coiled 38.1 7.4E+02 0.016 29.2 15.3 15 415-429 254-268 (596)
178 KOG1854 Mitochondrial inner me 37.3 8.2E+02 0.018 29.5 20.0 118 243-360 155-297 (657)
179 PLN03134 glycine-rich RNA-bind 36.9 67 0.0014 30.7 5.2 55 122-185 36-94 (144)
180 PTZ00464 SNF-7-like protein; P 36.5 5E+02 0.011 26.8 14.8 20 327-346 17-36 (211)
181 KOG0247 Kinesin-like protein [ 36.4 9E+02 0.02 29.8 15.9 66 390-461 580-647 (809)
182 PF05622 HOOK: HOOK protein; 36.4 12 0.00025 44.5 0.0 107 317-428 291-404 (713)
183 PF14988 DUF4515: Domain of un 36.4 4.9E+02 0.011 26.7 24.3 58 252-309 21-78 (206)
184 PF14662 CCDC155: Coiled-coil 35.4 5.2E+02 0.011 26.6 22.5 61 300-361 51-114 (193)
185 PF09787 Golgin_A5: Golgin sub 35.3 7.5E+02 0.016 28.5 23.5 17 576-592 468-484 (511)
186 PF04508 Pox_A_type_inc: Viral 35.0 38 0.00081 23.5 2.2 19 391-409 1-19 (23)
187 PF04810 zf-Sec23_Sec24: Sec23 34.8 27 0.00059 26.5 1.8 15 33-47 17-32 (40)
188 PRK10803 tol-pal system protei 34.5 1E+02 0.0023 32.4 6.6 44 400-457 56-99 (263)
189 PRK00398 rpoP DNA-directed RNA 34.5 28 0.0006 26.9 1.8 17 32-48 13-30 (46)
190 PF09727 CortBP2: Cortactin-bi 34.5 4.9E+02 0.011 26.7 11.0 29 317-345 141-169 (192)
191 COG1340 Uncharacterized archae 34.2 6.5E+02 0.014 27.5 28.8 100 386-489 167-275 (294)
192 PF14354 Lar_restr_allev: Rest 34.0 18 0.00039 29.2 0.7 11 39-50 3-13 (61)
193 PLN02678 seryl-tRNA synthetase 34.0 2.8E+02 0.0061 31.7 10.3 55 433-505 71-133 (448)
194 COG0466 Lon ATP-dependent Lon 33.9 9.9E+02 0.021 29.5 14.9 31 400-430 207-241 (782)
195 PF12718 Tropomyosin_1: Tropom 33.9 4.4E+02 0.0095 25.4 15.2 25 387-411 69-93 (143)
196 TIGR01005 eps_transp_fam exopo 33.6 7.1E+02 0.015 29.8 14.1 59 253-311 288-346 (754)
197 PRK13182 racA polar chromosome 33.6 2.2E+02 0.0047 28.5 8.3 34 376-409 110-143 (175)
198 PF11932 DUF3450: Protein of u 33.4 5.6E+02 0.012 26.5 12.5 55 409-467 50-104 (251)
199 PF08614 ATG16: Autophagy prot 32.9 5.1E+02 0.011 25.8 10.9 36 258-293 93-128 (194)
200 PRK10698 phage shock protein P 32.8 5.7E+02 0.012 26.4 22.4 61 252-312 16-79 (222)
201 PF08826 DMPK_coil: DMPK coile 32.7 2.3E+02 0.0051 23.9 7.1 53 402-459 5-58 (61)
202 PF07989 Microtub_assoc: Micro 32.6 90 0.002 27.1 4.8 42 304-345 30-71 (75)
203 PTZ00491 major vault protein; 32.3 7E+02 0.015 31.0 13.5 28 260-287 626-653 (850)
204 TIGR01649 hnRNP-L_PTB hnRNP-L/ 32.2 72 0.0016 36.1 5.3 69 117-194 389-463 (481)
205 PF10458 Val_tRNA-synt_C: Valy 31.7 2.4E+02 0.0051 23.5 7.1 53 398-453 4-59 (66)
206 KOG1265 Phospholipase C [Lipid 31.6 1.2E+03 0.025 29.6 17.8 143 241-410 1025-1176(1189)
207 TIGR02680 conserved hypothetic 31.3 1.3E+03 0.028 30.1 25.6 38 252-289 741-778 (1353)
208 PF13870 DUF4201: Domain of un 31.2 5.1E+02 0.011 25.3 15.9 18 298-315 62-79 (177)
209 KOG2264 Exostosin EXT1L [Signa 30.8 3.3E+02 0.0071 32.5 10.0 46 381-429 76-121 (907)
210 PF06637 PV-1: PV-1 protein (P 30.8 8.5E+02 0.018 27.8 14.3 23 401-426 359-381 (442)
211 smart00360 RRM RNA recognition 30.6 74 0.0016 23.8 3.7 45 139-184 7-55 (71)
212 PF03670 UPF0184: Uncharacteri 30.5 1.7E+02 0.0037 26.3 6.2 49 254-302 27-75 (83)
213 KOG0533 RRM motif-containing p 30.5 67 0.0014 33.9 4.3 66 121-195 84-152 (243)
214 TIGR01843 type_I_hlyD type I s 30.3 7.1E+02 0.015 26.7 15.1 11 616-626 404-414 (423)
215 smart00400 ZnF_CHCC zinc finge 30.3 63 0.0014 25.8 3.3 35 27-65 10-45 (55)
216 PF11608 Limkain-b1: Limkain b 30.1 44 0.00096 30.2 2.5 46 122-176 4-49 (90)
217 PRK01156 chromosome segregatio 29.7 1.1E+03 0.024 28.8 31.6 10 327-336 262-271 (895)
218 smart00531 TFIIE Transcription 29.6 28 0.0006 33.4 1.3 13 36-48 120-132 (147)
219 TIGR03655 anti_R_Lar restricti 29.5 24 0.00051 28.2 0.7 10 41-50 3-12 (53)
220 PF09738 DUF2051: Double stran 29.2 7.8E+02 0.017 26.8 15.7 28 266-293 83-110 (302)
221 PF12344 UvrB: Ultra-violet re 29.1 67 0.0015 25.5 3.1 24 277-300 4-30 (44)
222 PF10046 BLOC1_2: Biogenesis o 29.0 4.3E+02 0.0093 23.8 12.8 89 252-342 6-94 (99)
223 PF07926 TPR_MLP1_2: TPR/MLP1/ 29.0 4.9E+02 0.011 24.4 15.6 39 321-359 70-108 (132)
224 COG0576 GrpE Molecular chapero 28.7 3.4E+02 0.0073 27.5 8.9 55 456-517 93-156 (193)
225 COG4026 Uncharacterized protei 28.7 3.3E+02 0.0072 28.9 8.8 64 386-449 144-207 (290)
226 COG0172 SerS Seryl-tRNA synthe 28.6 4.2E+02 0.009 30.3 10.4 55 435-507 70-132 (429)
227 TIGR00219 mreC rod shape-deter 28.4 1.3E+02 0.0027 32.2 6.1 42 389-430 71-113 (283)
228 PF02994 Transposase_22: L1 tr 28.2 1.1E+02 0.0023 33.9 5.7 30 436-465 140-169 (370)
229 PF01576 Myosin_tail_1: Myosin 28.1 20 0.00042 43.8 0.0 109 250-358 64-189 (859)
230 PRK01156 chromosome segregatio 28.0 1.2E+03 0.026 28.5 31.4 35 251-285 467-501 (895)
231 COG4985 ABC-type phosphate tra 28.0 4E+02 0.0087 28.4 9.3 15 208-222 140-154 (289)
232 PF04880 NUDE_C: NUDE protein, 27.9 69 0.0015 32.0 3.7 11 269-279 2-12 (166)
233 KOG2072 Translation initiation 27.7 1.3E+03 0.028 28.9 20.9 31 378-408 664-694 (988)
234 PF14817 HAUS5: HAUS augmin-li 27.7 6.4E+02 0.014 30.3 12.1 77 244-320 77-159 (632)
235 PTZ00332 paraflagellar rod pro 27.7 1.1E+03 0.023 27.9 24.0 113 283-431 262-393 (589)
236 KOG4572 Predicted DNA-binding 27.6 1.3E+03 0.029 29.0 21.6 29 401-429 1016-1045(1424)
237 cd07647 F-BAR_PSTPIP The F-BAR 27.5 6.9E+02 0.015 25.6 17.1 115 307-427 103-219 (239)
238 PRK10929 putative mechanosensi 27.4 1.4E+03 0.031 29.3 24.7 104 309-412 257-361 (1109)
239 PF13863 DUF4200: Domain of un 27.3 4.8E+02 0.01 23.7 13.7 27 403-429 69-95 (126)
240 PF05129 Elf1: Transcription e 27.1 25 0.00055 30.8 0.5 11 36-46 19-29 (81)
241 KOG0963 Transcription factor/C 26.9 1.2E+03 0.025 28.2 24.5 48 435-491 312-359 (629)
242 PF03804 DUF325: Viral domain 26.9 39 0.00084 29.0 1.5 23 495-517 33-55 (71)
243 PHA02540 61 DNA primase; Provi 26.7 34 0.00073 37.6 1.5 57 39-95 27-91 (337)
244 PRK10698 phage shock protein P 26.7 7.2E+02 0.016 25.6 21.7 155 288-459 23-185 (222)
245 COG5185 HEC1 Protein involved 26.4 1.1E+03 0.024 27.7 25.7 98 241-343 252-356 (622)
246 PF05557 MAD: Mitotic checkpoi 26.3 7.2E+02 0.016 29.8 12.4 17 442-458 608-624 (722)
247 PF05266 DUF724: Protein of un 26.1 6.8E+02 0.015 25.4 10.5 17 413-429 136-152 (190)
248 PF00038 Filament: Intermediat 26.1 7.8E+02 0.017 25.8 26.2 168 290-486 45-220 (312)
249 TIGR03545 conserved hypothetic 26.0 6.5E+02 0.014 29.6 11.7 33 409-441 238-270 (555)
250 PF10805 DUF2730: Protein of u 26.0 2.8E+02 0.006 25.4 7.1 42 427-468 58-100 (106)
251 PF10058 DUF2296: Predicted in 25.9 36 0.00078 27.8 1.2 11 36-46 41-51 (54)
252 TIGR03185 DNA_S_dndD DNA sulfu 25.5 1.2E+03 0.025 27.7 28.0 15 150-164 141-155 (650)
253 KOG0962 DNA repair protein RAD 25.5 1.6E+03 0.035 29.4 24.9 64 261-324 886-952 (1294)
254 TIGR01661 ELAV_HUD_SF ELAV/HuD 25.5 1.1E+02 0.0025 32.1 5.2 47 122-176 5-55 (352)
255 PF15358 TSKS: Testis-specific 25.5 3.9E+02 0.0084 30.6 9.2 54 236-289 108-161 (558)
256 KOG0018 Structural maintenance 25.5 1.5E+03 0.033 29.0 24.6 74 408-485 402-475 (1141)
257 PF09787 Golgin_A5: Golgin sub 25.3 1.1E+03 0.024 27.2 26.1 55 413-469 367-421 (511)
258 PF12711 Kinesin-relat_1: Kine 25.3 5.1E+02 0.011 23.4 9.0 55 267-325 3-59 (86)
259 PF13912 zf-C2H2_6: C2H2-type 25.1 35 0.00075 22.9 0.8 22 39-63 1-22 (27)
260 PF04094 DUF390: Protein of un 25.1 1.4E+03 0.029 28.3 16.9 111 237-348 412-529 (828)
261 PF13909 zf-H2C2_5: C2H2-type 25.0 36 0.00077 22.5 0.8 19 40-62 1-19 (24)
262 KOG1103 Predicted coiled-coil 24.9 1E+03 0.023 26.8 19.0 55 369-426 199-263 (561)
263 PF07889 DUF1664: Protein of u 24.6 6.3E+02 0.014 24.2 13.2 95 239-334 29-123 (126)
264 PF10481 CENP-F_N: Cenp-F N-te 24.5 9.5E+02 0.021 26.2 15.7 104 322-436 23-137 (307)
265 PF12329 TMF_DNA_bd: TATA elem 24.5 4.6E+02 0.01 22.6 9.6 31 282-312 2-32 (74)
266 PRK05431 seryl-tRNA synthetase 24.4 6.2E+02 0.013 28.5 10.9 55 434-506 67-129 (425)
267 PF07851 TMPIT: TMPIT-like pro 24.3 6.1E+02 0.013 28.1 10.4 24 437-460 65-88 (330)
268 COG0724 RNA-binding proteins ( 24.1 1.3E+02 0.0029 28.5 4.9 60 120-187 115-178 (306)
269 PRK10884 SH3 domain-containing 23.9 8E+02 0.017 25.2 12.3 17 199-217 66-82 (206)
270 PF09728 Taxilin: Myosin-like 23.6 9.7E+02 0.021 26.0 27.1 98 290-404 105-205 (309)
271 KOG0244 Kinesin-like protein [ 23.6 1.6E+03 0.034 28.4 14.8 79 405-484 576-662 (913)
272 PF13913 zf-C2HC_2: zinc-finge 23.2 45 0.00098 23.0 1.1 20 39-62 2-21 (25)
273 PF07899 Frigida: Frigida-like 23.1 1.7E+02 0.0037 31.5 5.9 44 366-409 234-281 (290)
274 cd00590 RRM RRM (RNA recogniti 22.9 1.9E+02 0.0041 21.8 4.7 44 140-184 11-57 (74)
275 KOG4691 Uncharacterized conser 22.8 8.8E+02 0.019 25.2 13.7 24 292-315 66-89 (227)
276 PF00301 Rubredoxin: Rubredoxi 22.8 35 0.00076 27.2 0.5 14 37-50 32-45 (47)
277 PF13893 RRM_5: RNA recognitio 22.5 1.2E+02 0.0025 23.5 3.5 29 145-175 1-30 (56)
278 PHA00616 hypothetical protein 22.5 27 0.00059 27.6 -0.1 21 40-63 2-22 (44)
279 COG3883 Uncharacterized protei 22.5 9.9E+02 0.021 25.7 18.9 55 253-307 52-113 (265)
280 PF10805 DUF2730: Protein of u 22.5 2E+02 0.0044 26.2 5.5 34 396-429 47-86 (106)
281 PF04849 HAP1_N: HAP1 N-termin 22.4 1.1E+03 0.023 26.1 22.2 40 388-430 231-270 (306)
282 PF07464 ApoLp-III: Apolipopho 22.2 1.5E+02 0.0033 29.2 4.9 78 252-332 44-121 (155)
283 KOG4593 Mitotic checkpoint pro 22.1 1.5E+03 0.032 27.7 22.8 188 244-465 156-344 (716)
284 PF13851 GAS: Growth-arrest sp 21.7 8.5E+02 0.019 24.7 25.2 153 270-458 12-168 (201)
285 KOG2903 Predicted glutathione 21.7 42 0.00091 36.0 1.0 23 585-607 110-132 (319)
286 KOG2150 CCR4-NOT transcription 21.7 1.4E+03 0.031 27.2 13.7 27 396-422 127-153 (575)
287 PF09738 DUF2051: Double stran 21.6 9.5E+02 0.021 26.2 11.1 66 391-467 87-153 (302)
288 PF06428 Sec2p: GDP/GTP exchan 21.6 4E+02 0.0087 24.5 7.1 78 316-427 3-84 (100)
289 KOG2606 OTU (ovarian tumor)-li 21.4 3.6E+02 0.0077 29.5 7.8 30 391-420 45-74 (302)
290 cd07652 F-BAR_Rgd1 The F-BAR ( 21.4 9.1E+02 0.02 24.9 18.5 23 324-346 125-147 (234)
291 TIGR02231 conserved hypothetic 21.3 4E+02 0.0086 30.5 8.8 26 460-485 144-169 (525)
292 PF01093 Clusterin: Clusterin; 21.2 3.2E+02 0.007 31.3 7.8 36 378-413 38-73 (436)
293 COG5019 CDC3 Septin family pro 21.2 4.5E+02 0.0098 29.6 8.7 55 288-342 313-367 (373)
294 KOG3214 Uncharacterized Zn rib 21.2 39 0.00086 31.2 0.6 14 36-49 20-33 (109)
295 PF10473 CENP-F_leu_zip: Leuci 21.2 7.7E+02 0.017 24.0 18.1 95 275-370 4-101 (140)
296 PRK13729 conjugal transfer pil 21.1 2.9E+02 0.0062 32.0 7.4 12 502-513 191-202 (475)
297 TIGR03185 DNA_S_dndD DNA sulfu 20.9 1.4E+03 0.031 27.0 28.7 20 406-425 396-415 (650)
298 PF01576 Myosin_tail_1: Myosin 20.8 33 0.00071 41.9 0.0 71 409-483 322-392 (859)
299 KOG0993 Rab5 GTPase effector R 20.7 1.3E+03 0.029 26.6 15.3 92 214-307 19-115 (542)
300 PF10146 zf-C4H2: Zinc finger- 20.6 9.9E+02 0.021 25.0 13.6 15 292-306 32-46 (230)
301 TIGR02338 gimC_beta prefoldin, 20.5 6.5E+02 0.014 22.9 11.1 23 409-431 25-47 (110)
302 TIGR00414 serS seryl-tRNA synt 20.4 8.2E+02 0.018 27.6 10.8 53 436-506 72-132 (418)
303 COG5533 UBP5 Ubiquitin C-termi 20.4 60 0.0013 35.7 1.8 28 16-48 266-293 (415)
304 PF03127 GAT: GAT domain; Int 20.3 4.4E+02 0.0095 23.4 7.1 25 406-430 2-26 (100)
305 KOG0804 Cytoplasmic Zn-finger 20.3 1.4E+03 0.03 26.6 16.3 23 409-431 429-452 (493)
306 PF14932 HAUS-augmin3: HAUS au 20.2 1E+03 0.022 24.9 12.0 20 495-515 159-178 (256)
307 KOG0163 Myosin class VI heavy 20.0 1.8E+03 0.038 27.7 18.2 18 311-328 897-914 (1259)
No 1
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT. The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
Probab=100.00 E-value=1e-64 Score=468.50 Aligned_cols=131 Identities=66% Similarity=1.175 Sum_probs=130.4
Q ss_pred cccCCCCChhhHHHHhhcCCchhHHHHHHHHhhHHHHhhcCCCCcceEEEEecCccccccCcccHHHHHHH-HhhHHHHH
Q 006756 501 KRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEGTPKEIIDEEDEKIKSLK-ELGDEIYM 579 (632)
Q Consensus 501 KrmGeld~kpf~~ac~~k~~~~~~~~~a~~lcs~Wq~~l~~p~WhPFk~v~v~g~~keii~edD~kL~~Lk-e~Geev~~ 579 (632)
||||+||.+||+.||++||++++|+++|++|||+||++|+||+|||||||+++|+.++|||+||+||+.|| +||+|||+
T Consensus 1 KrMGeLd~kpF~~Ack~k~~~eeae~~A~~LcS~Wqe~ikdp~WhPFkvv~~~g~~~evi~edDekL~~Lk~e~Geevy~ 80 (132)
T PF03469_consen 1 KRMGELDEKPFLNACKRKYPEEEAEVKAAELCSLWQEEIKDPEWHPFKVVTVDGKEKEVIDEDDEKLQELKEEWGEEVYN 80 (132)
T ss_pred CcccccChHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhhCCCccceEEeccCCcccccccCchHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhhhhcCCCCcccccccccccCccccHHHHHHHHHHHHHhhhccc
Q 006756 580 AVTTALKELNEYNPSGRYVIPDLWNFKEGRKATLKEVISYIVGNIRRLKRKR 631 (632)
Q Consensus 580 aV~~Al~E~neyN~sgry~v~elWN~ke~rkAtl~E~~~~~~~~~k~~k~kr 631 (632)
||++||+|||||||||||||||||||+|||||||+|||+||++||+++||||
T Consensus 81 aV~~Al~E~nEyN~sGry~v~eLWN~ke~RkAtl~E~v~~i~~q~k~~krkr 132 (132)
T PF03469_consen 81 AVTKALLEINEYNPSGRYPVPELWNFKEGRKATLKEVVQYILKQWKTLKRKR 132 (132)
T ss_pred HHHHHHHHHHHhccCCCCCCccCCccccccccCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999998
No 2
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=100.00 E-value=1.4e-45 Score=336.10 Aligned_cols=114 Identities=46% Similarity=0.845 Sum_probs=87.0
Q ss_pred CCceeeecceEEEEecccccc-CCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHHHHhhh
Q 006756 113 QEDLYVWPWMGIIVNIVMETK-DRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAF 190 (632)
Q Consensus 113 ~de~iVWPwmgII~Ni~te~~-dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~lek~F 190 (632)
+|++|||||||||+||+|+++ +|+++|+|++.|++ |+.|+|.+|+||||+.||+|+|||+|++||+||+||++||+||
T Consensus 1 qdd~~VWPwmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~~F 80 (116)
T PF03468_consen 1 QDDLIVWPWMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEKHF 80 (116)
T ss_dssp ---EEEES-EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHHHH
T ss_pred CCCcccCCCEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHHHHH
Confidence 589999999999999999996 89999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhcCCChhhhhhhcCCCCCceeeeeeecCCCCCCCch
Q 006756 191 DADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPI 227 (632)
Q Consensus 191 e~~~~GRkdW~~~~~~~~~~LYGWvAradDy~~~g~i 227 (632)
+.+||||+||.+++.. +++||||||++|||++.|||
T Consensus 81 ~~~~~Gr~dW~~~~~~-~~~lYGw~A~~dD~~~~~~i 116 (116)
T PF03468_consen 81 EAQGHGRKDWERRRGG-GSQLYGWVARADDYNSPGPI 116 (116)
T ss_dssp HHTT-SHHHHT-SSS----S-EEEE-BHHHHHSSSHH
T ss_pred HHcCCCHHHHhhccCC-CCceeeeeCchhhccCCCCC
Confidence 9999999999998765 89999999999999999986
No 3
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=99.74 E-value=6.6e-19 Score=134.40 Aligned_cols=43 Identities=77% Similarity=1.188 Sum_probs=41.7
Q ss_pred ccCCCCCCcCccCchhHHhhhccCCCCCCCcChHHHHhHHHHH
Q 006756 42 CPFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKANHLALA 84 (632)
Q Consensus 42 CP~C~gkkK~dy~~~~LLqHA~gvG~sss~r~~k~ka~H~aLa 84 (632)
||||+|++|++|.|+||||||+|||+||+.|+++++|+|||||
T Consensus 1 CP~C~~kkk~~Y~~~~LlqHA~gvg~~~~~r~~k~ka~HrALa 43 (43)
T PF03470_consen 1 CPFCPGKKKQDYKYRELLQHASGVGASSSRRSAKEKANHRALA 43 (43)
T ss_pred CCCCCCCCCcceehhHHHHHHHhhCcCcccchHHHHHhhhhhC
Confidence 9999999999999999999999999998889999999999996
No 4
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.97 E-value=0.29 Score=56.08 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHh
Q 006756 396 ALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMK 428 (632)
Q Consensus 396 ~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmK 428 (632)
+-..+.+++..+...+.++.|+..|+.+|..+.
T Consensus 264 Lk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~q 296 (546)
T PF07888_consen 264 LKETVVQLKQEETQAQQLQQENEALKEQLRSAQ 296 (546)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 444455555555555666666666666665553
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.72 E-value=2.2 Score=51.84 Aligned_cols=7 Identities=0% Similarity=-0.363 Sum_probs=3.7
Q ss_pred ChhhHhh
Q 006756 141 SGYWLKR 147 (632)
Q Consensus 141 s~~~L~d 147 (632)
+...+.+
T Consensus 118 ~~~~~~~ 124 (1164)
T TIGR02169 118 RLSEIHD 124 (1164)
T ss_pred cHHHHHH
Confidence 4455555
No 6
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.71 E-value=1.8 Score=49.94 Aligned_cols=68 Identities=18% Similarity=0.310 Sum_probs=43.9
Q ss_pred hhhccCCCCHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHH
Q 006756 231 LRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFV 298 (632)
Q Consensus 231 LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yn 298 (632)
.+...+|.........+.......|..|...+....+....|+..+...+.+...+-+|++.|...+.
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~ 216 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLA 216 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444454444444445555566667777777777777777877888888888777777776654443
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.44 E-value=2.2 Score=55.55 Aligned_cols=219 Identities=26% Similarity=0.306 Sum_probs=100.1
Q ss_pred ceeeeeeecCCC------CCCCchhhhhhhccCCCCHHHHHH-----Hh--hhhHHHHHHHHHhHHHhhhhhHHHHHHHh
Q 006756 210 RIYGWFARADDN------TSEGPIGEYLRQEGKLRTVSDIVQ-----ED--AQSKIHVVAHLASKIDMKNEDLSELQCKF 276 (632)
Q Consensus 210 ~LYGWvAradDy------~~~g~iG~~LrK~gdLKTi~ei~~-----E~--~rk~~~lv~~L~n~I~~knk~l~elE~k~ 276 (632)
..=||+|+.+=. .+--+|.+..|.+..||+-+=.-- .. ..++...+.....+|......++..|.+-
T Consensus 782 ~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~ 861 (1930)
T KOG0161|consen 782 AIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKR 861 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344666665433 333478888898888887653211 00 11333444444555555555555566666
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-------HHHHHhhHHHHHHHhhHHHHHHHH
Q 006756 277 NETTMSLSRMLEEKDRLHYAFVEETRKMQ---------RLARDNVRRIL-------EEQEKLSCELETKKKKLDSWSKQL 340 (632)
Q Consensus 277 ne~t~sL~r~meEk~~lh~~yneE~~kmQ---------~~ar~~~~rI~-------~e~ekl~~eLe~k~~eld~r~k~L 340 (632)
++......++..++..|......|..... ..-...+++++ .+.+.....|+.++++++..+..|
T Consensus 862 ~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l 941 (1930)
T KOG0161|consen 862 KELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQEL 941 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555666555544433333322221 11112222222 222333444455555555555555
Q ss_pred HHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHh----hHHhhh
Q 006756 341 NKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQK---VEKEEALSKILQLEKQL----DAKQKL 413 (632)
Q Consensus 341 ~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hk---rEke~~~~kil~LekqL----~~kQ~L 413 (632)
.+.-..-+..+.+++.|+.....+...|.-+...+ ++.+-+|..+.| ..-..+...+...|.++ ..+.+|
T Consensus 942 ~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~---~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kl 1018 (1930)
T KOG0161|consen 942 KEQLEELELTLQKLELEKNAAENKLKNLEEEINSL---DENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKL 1018 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444445555555555544444444444333332 233333322211 11111222233333332 234555
Q ss_pred hhhHHHhhhhHHHHhhcC
Q 006756 414 EMEIEDLKGKLEVMKHLG 431 (632)
Q Consensus 414 ELEi~qLkG~L~VmKh~~ 431 (632)
|-.+..|.+.|+=.+.+.
T Consensus 1019 e~~l~~le~~le~e~~~r 1036 (1930)
T KOG0161|consen 1019 EQQLDDLEVTLEREKRIR 1036 (1930)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666665555543
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.39 E-value=4.1 Score=50.83 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhh-------------hccC-Ccccccccc
Q 006756 437 AVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLS-------------DLIG-ARTNIGVKR 502 (632)
Q Consensus 437 ~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~-------------~~~~-~~~~IgiKr 502 (632)
+....+..+.+.+++-.+.+..++.--..+-.+.+...++++.++..+..--. ...+ ....+| +
T Consensus 443 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~G--~ 520 (1163)
T COG1196 443 ELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYG--P 520 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCCccc--h
Confidence 34445555555555555566666555566666777777788877765432100 0000 011122 3
Q ss_pred cCCC--CChhhHHH----HhhcCCc--hhHHHHHHHHhhHHHH-hhcCCCCcceEEEEecCcc------------ccccC
Q 006756 503 LGEI--DPKPFQDA----CKNKFPL--EEAQVEASTLCSLWQE-NLKATEWHPFKIIHVEGTP------------KEIID 561 (632)
Q Consensus 503 mGel--d~kpf~~a----c~~k~~~--~~~~~~a~~lcs~Wq~-~l~~p~WhPFk~v~v~g~~------------keii~ 561 (632)
+|+| -...|..| |...... -+-+..|......|-. .+.-.+.-|-..|...... -.+|+
T Consensus 521 v~~li~v~~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~~~g~~~~a~dli~ 600 (1163)
T COG1196 521 VAELIKVKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLID 600 (1163)
T ss_pred HHHhcCcChHHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhccccccccccccchhHHHHHHhc
Confidence 4444 12244444 4333321 1334566777778865 5666666665555432221 14666
Q ss_pred cccHHHHHHH-HhhHH-HHHHHHHHHHHhhhh
Q 006756 562 EEDEKIKSLK-ELGDE-IYMAVTTALKELNEY 591 (632)
Q Consensus 562 edD~kL~~Lk-e~Gee-v~~aV~~Al~E~ney 591 (632)
-|+.--.-+. =+|.- |+.-+..|..-...+
T Consensus 601 ~d~~~~~~~~~~l~~t~Iv~~l~~A~~l~~~~ 632 (1163)
T COG1196 601 FDPKYEPAVRFVLGDTLVVDDLEQARRLARKL 632 (1163)
T ss_pred CCHHHHHHHHHHhCCeEEecCHHHHHHHHHhc
Confidence 6652222234 44432 233344555555555
No 9
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.38 E-value=1.3 Score=52.96 Aligned_cols=218 Identities=23% Similarity=0.333 Sum_probs=117.2
Q ss_pred HHHHHhHHHhhhhhHHHHHHHhh---------hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006756 255 VAHLASKIDMKNEDLSELQCKFN---------ETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCE 325 (632)
Q Consensus 255 v~~L~n~I~~knk~l~elE~k~n---------e~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~e 325 (632)
+.+|..++..+.+.+..+..++. ....+|.....+++++....++....-.+-..+.....=.++..++..
T Consensus 401 ie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~ 480 (775)
T PF10174_consen 401 IENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAK 480 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777777766666 344566666666777666655442221111112222222333333333
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHH
Q 006756 326 LETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKV--EKEEALSKILQL 403 (632)
Q Consensus 326 Le~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkr--Eke~~~~kil~L 403 (632)
+++--.+|..+.-+|....- +--+|..-..|+ .+.+.-+.++-.+..+.+-+|....++ ...++..+|..|
T Consensus 481 ~~~LQ~eLsEk~~~l~~~ke----e~s~l~s~~~K~---~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~L 553 (775)
T PF10174_consen 481 LESLQKELSEKELQLEDAKE----EASKLASSQEKK---DSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQL 553 (775)
T ss_pred HHHHhhhhHHHHHHHHHhhh----HHHHHhhccchh---hhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHH
Confidence 33333333333333332111 111222112222 344445555555566667777766655 234566778888
Q ss_pred HHHhhHHh----hhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHH--HhhccHHH
Q 006756 404 EKQLDAKQ----KLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAK--ERQSNDEL 477 (632)
Q Consensus 404 ekqL~~kQ----~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~k--er~sndEL 477 (632)
|+.....- +-..||.+|.+-|.-+--- -...-++|..|..+|++---.+......++++-+. +|++..+|
T Consensus 554 e~ev~~~~ee~~kaq~EVERLl~~L~~~E~E----K~~ke~ki~~LekeLek~~~~~~~~~~~~~~~k~~~~~~~~~ell 629 (775)
T PF10174_consen 554 EQEVTRYREESEKAQAEVERLLDILREAENE----KNDKEKKIGELEKELEKAQMHLAKQQETVEATKIEENKRKRAELL 629 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHhhhHHH
Confidence 87654332 2246777777644433221 11334678888888877666666655666665444 88899999
Q ss_pred HHHHHH
Q 006756 478 QEARRE 483 (632)
Q Consensus 478 q~aRk~ 483 (632)
.+|+++
T Consensus 630 eea~Re 635 (775)
T PF10174_consen 630 EEALRE 635 (775)
T ss_pred HHHHhh
Confidence 999883
No 10
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.36 E-value=3.2 Score=51.35 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=63.5
Q ss_pred HHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006756 251 KIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLH------YAFVEETRKMQRLARDNVRRILEEQEKLSC 324 (632)
Q Consensus 251 ~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh------~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~ 324 (632)
-....+-+.|....-.+..+++|...-..-..|.++.....+|- ..-..|+++|=..++..+++.-.+..+|..
T Consensus 375 ~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~ 454 (1293)
T KOG0996|consen 375 IKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEE 454 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHH
Confidence 34555566666666666666666666655555555544433221 122345677777777777777777777777
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 006756 325 ELETKKKKLDSWSKQLNKREALTERERQKLDADRQ 359 (632)
Q Consensus 325 eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~ 359 (632)
.++.-.++|+--...|++...---.++.++++++.
T Consensus 455 ~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~ 489 (1293)
T KOG0996|consen 455 LLEKEERELDEILDSLKQETEGIREEIEKLEKELM 489 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 77777777765555555433333344444444433
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.28 E-value=4.2 Score=49.44 Aligned_cols=6 Identities=0% Similarity=0.562 Sum_probs=2.7
Q ss_pred cccCcc
Q 006756 558 EIIDEE 563 (632)
Q Consensus 558 eii~ed 563 (632)
.+|+-+
T Consensus 604 ~~i~~~ 609 (1164)
T TIGR02169 604 DLVEFD 609 (1164)
T ss_pred HHccCc
Confidence 345543
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.00 E-value=8.2 Score=50.56 Aligned_cols=47 Identities=26% Similarity=0.470 Sum_probs=30.3
Q ss_pred hhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHh
Q 006756 412 KLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESL 462 (632)
Q Consensus 412 ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~ 462 (632)
.+|-.+..|.|.|..+. +...+++.+.++|...|..++.++..|.+-
T Consensus 1038 e~Ek~~rkle~el~~~~----e~~~~~~~~~~el~~~l~kke~El~~l~~k 1084 (1930)
T KOG0161|consen 1038 ELEKAKRKLEGELKDLQ----ESIEELKKQKEELDNQLKKKESELSQLQSK 1084 (1930)
T ss_pred HHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444446666664332 234557888888888888888888766543
No 13
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.86 E-value=4.6 Score=49.30 Aligned_cols=86 Identities=23% Similarity=0.256 Sum_probs=62.0
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 326 LETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKK---ADENVLRLVEEQKVEKEEALSKILQ 402 (632)
Q Consensus 326 Le~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~k---ade~vlkLve~hkrEke~~~~kil~ 402 (632)
|+-+...|+-|--++.++-++-+..-++|..|.++--..++++..+.-+|++ ++..++.+...+..+-++++++|..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555666777777778888888777778888888888843 5666778888888888888888888
Q ss_pred HHHHhhHHh
Q 006756 403 LEKQLDAKQ 411 (632)
Q Consensus 403 LekqL~~kQ 411 (632)
|-+-|...+
T Consensus 493 lnk~L~~r~ 501 (1195)
T KOG4643|consen 493 LNKSLNNRD 501 (1195)
T ss_pred HHHHHHHHH
Confidence 877776654
No 14
>PRK11637 AmiB activator; Provisional
Probab=95.48 E-value=3.2 Score=46.02 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=20.4
Q ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHH
Q 006756 314 RILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDA 356 (632)
Q Consensus 314 rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~ 356 (632)
.++++....+.+|++++.+|+..-.+|+.+.+....++..|+.
T Consensus 170 ~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~ 212 (428)
T PRK11637 170 ETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQ 212 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555554444444444444444444443
No 15
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.35 E-value=7.4 Score=47.22 Aligned_cols=113 Identities=24% Similarity=0.337 Sum_probs=58.7
Q ss_pred HHhhhhhHHHHHHHhhhhhHHHHhHHHH-----HH--HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHh
Q 006756 262 IDMKNEDLSELQCKFNETTMSLSRMLEE-----KD--RLHYAFVEETRKMQRLARDN---VRRILEEQEKLSCELETKKK 331 (632)
Q Consensus 262 I~~knk~l~elE~k~ne~t~sL~r~meE-----k~--~lh~~yneE~~kmQ~~ar~~---~~rI~~e~ekl~~eLe~k~~ 331 (632)
+...++.+++.-++.-+.-.+|+|-+.+ ++ .-...|.+||-..+....=- -.-.-+-.+.|..++++-..
T Consensus 260 mkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkE 339 (1243)
T KOG0971|consen 260 MKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 339 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666666543 11 11345666666555432111 11122334556666666555
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhh---hhchhHhhHHHHHh--hhHHHHHH
Q 006756 332 KLDSWSKQLNKREALTERERQKLDADRQQNDL---RNNSLQLASMEQKK--ADENVLRL 385 (632)
Q Consensus 332 eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~---~~~~l~lA~~EQ~k--ade~vlkL 385 (632)
.+|.-+-+|+ .|..|++..-. --++.++-.+|||- -.+-+.+|
T Consensus 340 r~deletdlE-----------ILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrL 387 (1243)
T KOG0971|consen 340 RVDELETDLE-----------ILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRL 387 (1243)
T ss_pred HHHHHHHHHH-----------HHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 5554444444 55566654322 25777888888873 33445444
No 16
>PRK11637 AmiB activator; Provisional
Probab=95.30 E-value=6 Score=43.84 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhh
Q 006756 382 VLRLVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKH 429 (632)
Q Consensus 382 vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh 429 (632)
-..+++..+..+.++.....+|+.++...+.+.-+.++-+..|+..+.
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~ 215 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARN 215 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777888888888888888888888888888888888876664
No 17
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.06 E-value=13 Score=46.42 Aligned_cols=188 Identities=19% Similarity=0.218 Sum_probs=107.3
Q ss_pred HHHhhhhhHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHH
Q 006756 273 QCKFNETTMSLSRMLEEKDR---LHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTER 349 (632)
Q Consensus 273 E~k~ne~t~sL~r~meEk~~---lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~ 349 (632)
+..+++....+...-+++.. +...+.+|+... +.-.++.+-..+...+++.+|+.....+........++......
T Consensus 493 q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~-q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e 571 (1317)
T KOG0612|consen 493 QHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA-QKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKE 571 (1317)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhh
Confidence 35566666565555555553 467788888888 44566666677777888888887776666666666666655555
Q ss_pred HHHhhHHHHHhhhhh---hchhHhhHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHH
Q 006756 350 ERQKLDADRQQNDLR---NNSLQLASMEQKKADENVLRLVEE-------QKVEKEEALSKILQLEKQLDAKQKLEMEIED 419 (632)
Q Consensus 350 er~kL~~Ek~kn~~~---~~~l~lA~~EQ~kade~vlkLve~-------hkrEke~~~~kil~LekqL~~kQ~LELEi~q 419 (632)
--+.++++.+.+..- ++.|+.+...--+....+.-.++. +..+..++-+.|.-|+.-+.+++..++-+++
T Consensus 572 ~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 572 LSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred hhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 555566665543322 333333322222222333333333 3446667788888888888888887777777
Q ss_pred hhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHH
Q 006756 420 LKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTL 466 (632)
Q Consensus 420 LkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L 466 (632)
|+-... .+..+-+-+.. =..+.-+|+...++++.+.+-|+.+
T Consensus 652 l~r~~~--e~~~~~ek~~~---e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 652 LKRENQ--ERISDSEKEAL---EIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHH--HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554332 22211111111 1234455555566666666666665
No 18
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.05 E-value=13 Score=46.76 Aligned_cols=226 Identities=19% Similarity=0.235 Sum_probs=93.0
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 006756 253 HVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKK 332 (632)
Q Consensus 253 ~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~e 332 (632)
+....+...+..-+..+..++..+++....++.-...-..-+...+.++..+++.-..+...=+.+-...-..|.+-..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~ 360 (1201)
T PF12128_consen 281 QEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNE 360 (1201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHH
Confidence 33333444444444444444444444444444444444444555555555555555544332233333333444444444
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---
Q 006756 333 LDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDA--- 409 (632)
Q Consensus 333 ld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~--- 409 (632)
++....+++-+......-..+....+++-....+. ..+...+. .-.+-+...+.++...+.+..|+.++.+
T Consensus 361 ~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~----~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~ 434 (1201)
T PF12128_consen 361 LENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNR----QQERLQAQ--QDEIREEKAERREQIEEEYQALEQELRQQSQ 434 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433333333333333221111110 01111111 1112222233344444555555555542
Q ss_pred --HhhhhhhHHHhhhhHHHHhhcCC--CCcHHHHHHHHHHHHH-------HHhHHhhHHHHHHhhHHHHHHHhhccHHHH
Q 006756 410 --KQKLEMEIEDLKGKLEVMKHLGD--EDDAAVQKKMKEMNDE-------LESKIDDLDEMESLNKTLIAKERQSNDELQ 478 (632)
Q Consensus 410 --kQ~LELEi~qLkG~L~VmKh~~~--~~d~~~~~k~~~l~~~-------l~ek~~el~~~e~~nq~L~~ker~sndELq 478 (632)
.+.+.-+-.+++..|..+++.-. .-.++....++.+... +......+..++.--+.+-..-.+..++|+
T Consensus 435 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 514 (1201)
T PF12128_consen 435 EQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELR 514 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333344444444444311 1233444444444443 333444444444444444444455566677
Q ss_pred HHHHHH
Q 006756 479 EARREL 484 (632)
Q Consensus 479 ~aRk~l 484 (632)
.+|.++
T Consensus 515 ~~~~~~ 520 (1201)
T PF12128_consen 515 QARREL 520 (1201)
T ss_pred HHHHHH
Confidence 766654
No 19
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.90 E-value=1.8 Score=48.79 Aligned_cols=65 Identities=26% Similarity=0.288 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhh-hhhchhHhhHHHHHhhhHHHHHHH-HHHHHHHHH
Q 006756 331 KKLDSWSKQLNKREALTERERQKLDADRQQND-LRNNSLQLASMEQKKADENVLRLV-EEQKVEKEE 395 (632)
Q Consensus 331 ~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~-~~~~~l~lA~~EQ~kade~vlkLv-e~hkrEke~ 395 (632)
++--+.|-++++-=-+.+.+-..|+..+-+-. .-.+.|++...|....+-..|.|- |.||+||+.
T Consensus 442 nksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~eken 508 (527)
T PF15066_consen 442 NKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKEN 508 (527)
T ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33345566666555555555555655543221 224777777777766666677664 456666654
No 20
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.78 E-value=15 Score=45.76 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 250 SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRR 314 (632)
Q Consensus 250 k~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~r 314 (632)
..+.-+.+|...-+-.-.+-+-.+..+.++..++..+.++...++..-.++-++++..+.+..++
T Consensus 303 ~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k 367 (1293)
T KOG0996|consen 303 PKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEK 367 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHH
Confidence 44555666665555444455555666666666666666666666666666666666555555444
No 21
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.77 E-value=13 Score=44.82 Aligned_cols=131 Identities=21% Similarity=0.256 Sum_probs=69.0
Q ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHH----HhhHHHHHhhh-------hhhchhHhhHHHHHhhhHHHHH
Q 006756 316 LEEQEKLSCELETKKKKLDSWSKQLNKREALTERER----QKLDADRQQND-------LRNNSLQLASMEQKKADENVLR 384 (632)
Q Consensus 316 ~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er----~kL~~Ek~kn~-------~~~~~l~lA~~EQ~kade~vlk 384 (632)
..+++-+..+|+.+|+.|++|..-|.+--.+-+.-= +-|+.+++--+ .-...|+++.++-.+.--++--
T Consensus 258 d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc 337 (1265)
T KOG0976|consen 258 DMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRC 337 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777888888888888776653222211111 12222222111 1144566666655443333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHH
Q 006756 385 LVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLD 457 (632)
Q Consensus 385 Lve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~ 457 (632)
-+-++++--|-+-+|..+|||+-|. +++.+..++.+++-. .+.+..+-++..++++.++++.
T Consensus 338 ~LlEarrk~egfddk~~eLEKkrd~---al~dvr~i~e~k~nv--------e~elqsL~~l~aerqeQidelK 399 (1265)
T KOG0976|consen 338 ALLEARRKAEGFDDKLNELEKKRDM---ALMDVRSIQEKKENV--------EEELQSLLELQAERQEQIDELK 399 (1265)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHH---HHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666777888888887663 444444444444321 1224445555566655555554
No 22
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.73 E-value=15 Score=45.43 Aligned_cols=53 Identities=26% Similarity=0.461 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHhhHH--HHHHHhhccHHHHHHHHHHHHhh
Q 006756 436 AAVQKKMKEMNDELESKIDDLDEMESLNKT--LIAKERQSNDELQEARRELIQGL 488 (632)
Q Consensus 436 ~~~~~k~~~l~~~l~ek~~el~~~e~~nq~--L~~ker~sndELq~aRk~lI~~l 488 (632)
+++++.|..|+...+..++.+.+++.+... +-.++.+--+++..+=+++|+.+
T Consensus 867 ~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~~~k~~~~k~~~~e~L~~l 921 (1074)
T KOG0250|consen 867 AEIKREIKRLKRQIQMCEESLGELEELHRGLHEARKELKKEDELKVTLDELLKAL 921 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 688899999999999999999999999888 44566666677777655555543
No 23
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.68 E-value=17 Score=45.68 Aligned_cols=12 Identities=8% Similarity=0.122 Sum_probs=6.5
Q ss_pred HHHHHHHhcCCC
Q 006756 83 LAKYLEVDLAGG 94 (632)
Q Consensus 83 Lak~Le~dl~~~ 94 (632)
+..+|+.=||..
T Consensus 40 I~DAi~fVLG~~ 51 (1163)
T COG1196 40 IVDAIRFVLGEQ 51 (1163)
T ss_pred HHHHHHHHhCcc
Confidence 445555555554
No 24
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.15 E-value=18 Score=43.94 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=11.3
Q ss_pred HHHHhhhhcCCCCccccc
Q 006756 584 ALKELNEYNPSGRYVIPD 601 (632)
Q Consensus 584 Al~E~neyN~sgry~v~e 601 (632)
|...+..+.+.|+.+.+.
T Consensus 634 a~~~~~~~~~~g~~v~~~ 651 (1179)
T TIGR02168 634 ALELAKKLRPGYRIVTLD 651 (1179)
T ss_pred HHHHHHHcCCCceEEecC
Confidence 666666666777655543
No 25
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.00 E-value=7.7 Score=39.20 Aligned_cols=136 Identities=29% Similarity=0.349 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHh-hhHHHHHhhHHHHHhhhhhhc
Q 006756 288 EEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREA-LTERERQKLDADRQQNDLRNN 366 (632)
Q Consensus 288 eEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a-~~~~er~kL~~Ek~kn~~~~~ 366 (632)
.+--++++.|++|++-++..-|....++-+-..+++ +.+..+..+....+.|.++.. .+=.+|.+|.
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk-~~~~el~k~~~~l~~L~~L~~dknL~eReeL~----------- 124 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLK-DKDEELLKTKDELKHLKKLSEDKNLAEREELQ----------- 124 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-----------
Confidence 445588999999999999988887666544443333 333344444444444444333 2222233332
Q ss_pred hhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHH
Q 006756 367 SLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMN 446 (632)
Q Consensus 367 ~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~ 446 (632)
.=++......++.-.+|..|+++| +|.-.-.+-.|.+. .+|+.++.
T Consensus 125 -----------------~kL~~~~~~l~~~~~ki~~Lek~l------eL~~k~~~rql~~e-----------~kK~~~~~ 170 (194)
T PF15619_consen 125 -----------------RKLSQLEQKLQEKEKKIQELEKQL------ELENKSFRRQLASE-----------KKKHKEAQ 170 (194)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHH-----------HHHHHHHH
Confidence 122333445555666777777754 44444444444432 34555555
Q ss_pred HHHHhHHhhHHHHHHhhHHHHHHHhh
Q 006756 447 DELESKIDDLDEMESLNKTLIAKERQ 472 (632)
Q Consensus 447 ~~l~ek~~el~~~e~~nq~L~~ker~ 472 (632)
.++..-..+. +.|++.|-.|+|.
T Consensus 171 ~~~~~l~~ei---~~L~~klkEKer~ 193 (194)
T PF15619_consen 171 EEVKSLQEEI---QRLNQKLKEKERE 193 (194)
T ss_pred HHHHHHHHHH---HHHHHHHHHHhhc
Confidence 5554444444 4677887777764
No 26
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=93.91 E-value=10 Score=40.18 Aligned_cols=158 Identities=23% Similarity=0.350 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhh
Q 006756 292 RLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLA 371 (632)
Q Consensus 292 ~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA 371 (632)
.||..|..-...|+.-.++ .-.....+-.+|+++...|+.|-++|. +++.|.+.+.+.-|....-.+.+-+
T Consensus 20 ~l~~~ykq~f~~~reEl~E----FQegSrE~EaelesqL~q~etrnrdl~-----t~nqrl~~E~e~~Kek~e~q~~q~y 90 (333)
T KOG1853|consen 20 LLHHEYKQHFLQMREELNE----FQEGSREIEAELESQLDQLETRNRDLE-----TRNQRLTTEQERNKEKQEDQRVQFY 90 (333)
T ss_pred hhHHHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677776655555543332 222344456788888888888887776 6677777777766666666677777
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHH
Q 006756 372 SMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLD----AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMND 447 (632)
Q Consensus 372 ~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~----~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~ 447 (632)
..+-+-.|+.. . -+-.||.+++.|-+||+--| +|.+-+.-.+-+..+|+ ....++.=|..
T Consensus 91 ~q~s~Leddls----q-t~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLn-----------qAIErnAfLES 154 (333)
T KOG1853|consen 91 QQESQLEDDLS----Q-THAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLN-----------QAIERNAFLES 154 (333)
T ss_pred HHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHH-----------HHHHHHHHHHH
Confidence 66655444331 1 12356777888888877544 23333333333333333 23456777888
Q ss_pred HHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHH
Q 006756 448 ELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELI 485 (632)
Q Consensus 448 ~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI 485 (632)
+|.||+--|+.+. -| .||-.+.|++|-
T Consensus 155 ELdEke~llesvq----RL-------kdEardlrqela 181 (333)
T KOG1853|consen 155 ELDEKEVLLESVQ----RL-------KDEARDLRQELA 181 (333)
T ss_pred HhhHHHHHHHHHH----HH-------HHHHHHHHHHHH
Confidence 8888877665433 22 366667777663
No 27
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.76 E-value=19 Score=42.89 Aligned_cols=216 Identities=19% Similarity=0.280 Sum_probs=107.1
Q ss_pred hhhhhccCCCCHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHH-HHHHHHHHHHHHHHHHHHHH
Q 006756 229 EYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRML-EEKDRLHYAFVEETRKMQRL 307 (632)
Q Consensus 229 ~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~m-eEk~~lh~~yneE~~kmQ~~ 307 (632)
+|||+. +|+-.--+..++.|-..+|-+-+-.+++..-+.. ...-+++.|.- -|.+.|-..-..+|.+|.+
T Consensus 789 rflRrQ-eLreLR~LQkeE~R~qqqL~~k~~~q~Eq~~rrF-------eqE~~~kkr~~d~EmenlErqQkq~iE~~Eq- 859 (1187)
T KOG0579|consen 789 RFLRRQ-ELRELRRLQKEEARQQQQLQAKGIKQVEQQARRF-------EQEQTNKKRTSDLEMENLERQQKQEIEDTEQ- 859 (1187)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-
Confidence 778887 7888888888888887777766655544333222 22222222221 1233333344444444433
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH-----HHhhhHHHHHh-hHHHHHhhhhh--hchhHhhHHHHHhhh
Q 006756 308 ARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNK-----REALTERERQK-LDADRQQNDLR--NNSLQLASMEQKKAD 379 (632)
Q Consensus 308 ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k-----~~a~~~~er~k-L~~Ek~kn~~~--~~~l~lA~~EQ~kad 379 (632)
.|..+.-++..++|.|-|--|+....+-|+.-| +.-.+-..|+- |.+-+++...+ -..-..-+.-||-++
T Consensus 860 --~h~~rlR~eakRir~EQekd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~ekdFv~kqqq~le 937 (1187)
T KOG0579|consen 860 --AHEHRLRNEAKRIRIEQEKDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKEKDFVMKQQQNLE 937 (1187)
T ss_pred --HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 233333344444444444444333322222111 11111111110 11111111100 000112334455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh---------hhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHH
Q 006756 380 ENVLRLVEEQKVEKEEALSKILQLEKQLDAKQKL---------EMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELE 450 (632)
Q Consensus 380 e~vlkLve~hkrEke~~~~kil~LekqL~~kQ~L---------ELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ 450 (632)
-.+.+++++||.|.-.+...- |.+||.| |||-.||+.+-+..|..--|. =. ---+.=|.
T Consensus 938 ~~lkrm~~~~k~ema~iErec------Lm~Kq~LlRarEaaiWElEe~qlqEkhqL~kqqlKDq--Yf----lqRhqlL~ 1005 (1187)
T KOG0579|consen 938 AMLKRMAEKHKEEMASIEREC------LMQKQNLLRAREAAIWELEEKQLQEKHQLHKQQLKDQ--YF----LQRHQLLA 1005 (1187)
T ss_pred HHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHH
Confidence 667778888887665554443 3444443 888899999888887742211 11 11123355
Q ss_pred hHHhhHHHHHHhhHHHH
Q 006756 451 SKIDDLDEMESLNKTLI 467 (632)
Q Consensus 451 ek~~el~~~e~~nq~L~ 467 (632)
--+.+|+.|+-.||.+|
T Consensus 1006 rHekE~eQmqrynQr~i 1022 (1187)
T KOG0579|consen 1006 RHEKEMEQMQRYNQREI 1022 (1187)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66788999999999998
No 28
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.56 E-value=25 Score=43.62 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHhHHHhhhhhHHHHHHHhhh---hhHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 249 QSKIHVVAHLASKIDMKNEDLSELQCKFNE---TTMSLSRMLEE-----------KDRLHYAFVEETRKMQRLARDNVRR 314 (632)
Q Consensus 249 rk~~~lv~~L~n~I~~knk~l~elE~k~ne---~t~sL~r~meE-----------k~~lh~~yneE~~kmQ~~ar~~~~r 314 (632)
..+..+|+.+...|..-.+++++++.+... +.+.+.+.+.= +++-.....++|.+.|...-...++
T Consensus 224 ~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~k 303 (1074)
T KOG0250|consen 224 DHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEK 303 (1074)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888887777652 33333333322 3344444555666666655554444
Q ss_pred H
Q 006756 315 I 315 (632)
Q Consensus 315 I 315 (632)
|
T Consensus 304 i 304 (1074)
T KOG0250|consen 304 I 304 (1074)
T ss_pred H
Confidence 4
No 29
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.50 E-value=16 Score=41.26 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhH
Q 006756 391 VEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKL 424 (632)
Q Consensus 391 rEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L 424 (632)
.+.+.+-..|.+++......+.+.-.+..++..+
T Consensus 313 ~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i 346 (562)
T PHA02562 313 HSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKI 346 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333
No 30
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.48 E-value=12 Score=44.51 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=21.7
Q ss_pred HhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHH
Q 006756 259 ASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEET 301 (632)
Q Consensus 259 ~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~ 301 (632)
+..|....+.-++|+.+++..+.+.+.-+.-...|-..+.+|.
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555566666666655555544433334444444443
No 31
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.32 E-value=6.2 Score=42.47 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHhh-HHhhhhhhHHHhhhhHHHHhhc
Q 006756 390 KVEKEEALSKILQLEKQLD-AKQKLEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 390 krEke~~~~kil~LekqL~-~kQ~LELEi~qLkG~L~VmKh~ 430 (632)
..++.++...|.++++.++ .+..=.-||.+|+.++..+.++
T Consensus 250 ~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 250 EEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3455666666666666665 3334556666666666655554
No 32
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.07 E-value=39 Score=44.35 Aligned_cols=169 Identities=21% Similarity=0.283 Sum_probs=95.8
Q ss_pred HHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhH
Q 006756 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRL------HYAFVEETRKMQRLARD-NVRRILEEQEKLSC 324 (632)
Q Consensus 252 ~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~l------h~~yneE~~kmQ~~ar~-~~~rI~~e~ekl~~ 324 (632)
..-+..|..+|..-+..+.-|++...++...+...+.+..+| +...+.++..-+..+-. .+.+.-.+..+|..
T Consensus 1242 ~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~ 1321 (1822)
T KOG4674|consen 1242 LEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKE 1321 (1822)
T ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 334577888888888888888888888888888777776544 23344444444333322 35666667777777
Q ss_pred HHHHHHhhHHHHHHHHHHHH-------hhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 006756 325 ELETKKKKLDSWSKQLNKRE-------ALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEAL 397 (632)
Q Consensus 325 eLe~k~~eld~r~k~L~k~~-------a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~ 397 (632)
+|+++-+.+..=.+.|+.+. -.-..+++.|..+.+.-...+..|.-|--|+.++-..+...-..|.-..+...
T Consensus 1322 el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~~~~~~~e~t~ 1401 (1822)
T KOG4674|consen 1322 ELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKKAHELMQEDTS 1401 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666666665444 22233444444444433333444443333444443444444455555555555
Q ss_pred HHHHHHHHHhhHHhhhhhhHHHhhhhH
Q 006756 398 SKILQLEKQLDAKQKLEMEIEDLKGKL 424 (632)
Q Consensus 398 ~kil~LekqL~~kQ~LELEi~qLkG~L 424 (632)
.+...+...+. |.-||+.|+.+|
T Consensus 1402 rk~e~~~~k~~----~~~e~~sl~eeL 1424 (1822)
T KOG4674|consen 1402 RKLEKLKEKLE----LSEELESLKEEL 1424 (1822)
T ss_pred HHHHHHHHHHh----HHHHHHHHHHHH
Confidence 55555444444 445555555555
No 33
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.91 E-value=30 Score=42.81 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHH
Q 006756 396 ALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMN 446 (632)
Q Consensus 396 ~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~ 446 (632)
+-.-+...|+-+.+++..+|+++.|.+-+.-|+. +..+..++|+.|.
T Consensus 887 i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~----e~~~~~k~v~~l~ 933 (1174)
T KOG0933|consen 887 ISGLLTSQEKCLSEKSDGELERKKLEHEVTKLES----EKANARKEVEKLL 933 (1174)
T ss_pred HhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhh----hHHHHHHHHHHHH
Confidence 4444456677788999999999999988877665 2344455555543
No 34
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.81 E-value=31 Score=42.57 Aligned_cols=42 Identities=29% Similarity=0.512 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHH
Q 006756 440 KKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELI 485 (632)
Q Consensus 440 ~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI 485 (632)
..|.+|...+.+-...|+...+.+..|- .--||||++||+|-
T Consensus 432 e~i~~l~~si~e~~~r~~~~~~~~~~~k----~~~del~~~Rk~lW 473 (1200)
T KOG0964|consen 432 EEIKELESSINETKGRMEEFDAENTELK----RELDELQDKRKELW 473 (1200)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3444445555555555555544444432 33489999999753
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=92.76 E-value=28 Score=41.90 Aligned_cols=13 Identities=15% Similarity=0.072 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHh
Q 006756 395 EALSKILQLEKQL 407 (632)
Q Consensus 395 ~~~~kil~LekqL 407 (632)
.+...+..|+..+
T Consensus 346 ~~~~~~~~le~~~ 358 (880)
T PRK02224 346 SLREDADDLEERA 358 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
No 36
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.48 E-value=30 Score=41.86 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=50.4
Q ss_pred HHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 006756 243 IVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQR---LARDNVRRILEEQ 319 (632)
Q Consensus 243 i~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~---~ar~~~~rI~~e~ 319 (632)
.+..-.+.-.++-..|-.+|...++.|..+ ..-+..|.+++.+|++++..-.++-...-. ...-..+-+-.+|
T Consensus 75 ~~~~~s~e~e~~~~~le~~l~e~~~~l~~~----~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken 150 (769)
T PF05911_consen 75 AVAKKSKEWEKIKSELEAKLAELSKRLAES----AAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKEN 150 (769)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333444444444444454444444433 222334455556666665554443222211 1122344556678
Q ss_pred HHhhHHHHHHHhhHHHHHHHHH
Q 006756 320 EKLSCELETKKKKLDSWSKQLN 341 (632)
Q Consensus 320 ekl~~eLe~k~~eld~r~k~L~ 341 (632)
-.|+.||-..-+||+.|..+.+
T Consensus 151 ~~Lkye~~~~~keleir~~E~~ 172 (769)
T PF05911_consen 151 SSLKYELHVLSKELEIRNEERE 172 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877665
No 37
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=2.1 Score=40.29 Aligned_cols=93 Identities=34% Similarity=0.497 Sum_probs=70.2
Q ss_pred HHHHHHHHH----HHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHH---------HHHHHHHHhHHhhHHHHH
Q 006756 394 EEALSKILQ----LEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKM---------KEMNDELESKIDDLDEME 460 (632)
Q Consensus 394 e~~~~kil~----LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~---------~~l~~~l~ek~~el~~~e 460 (632)
++.+++..+ |+..+.+||+||.++...+-.|+-...++ +|..+++.+ +++..+|+++.+.| +
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~--eD~~vYk~VG~llvk~~k~~~~~eL~er~E~L---e 83 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLD--EDAPVYKKVGNLLVKVSKEEAVDELEERKETL---E 83 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cccHHHHHhhhHHhhhhHHHHHHHHHHHHHHH---H
Confidence 344444444 44555689999999999999888888774 466788776 45566665555554 5
Q ss_pred HhhHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q 006756 461 SLNKTLIAKERQSNDELQEARRELIQGLSDL 491 (632)
Q Consensus 461 ~~nq~L~~ker~sndELq~aRk~lI~~l~~~ 491 (632)
---.||-..|+....+|++-+.+|++-|..-
T Consensus 84 ~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 84 LRIKTLEKQEEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7788999999999999999999999888753
No 38
>PRK09039 hypothetical protein; Validated
Probab=92.44 E-value=17 Score=39.70 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHhhhhccCCccccccc
Q 006756 474 NDELQEARRELIQGLSDLIGARTNIGVK 501 (632)
Q Consensus 474 ndELq~aRk~lI~~l~~~~~~~~~IgiK 501 (632)
..||...|.+++..|.++.+++..|.|.
T Consensus 189 ~~~l~~~~~~~~~~l~~~~~~~~~iri~ 216 (343)
T PRK09039 189 VQELNRYRSEFFGRLREILGDREGIRIV 216 (343)
T ss_pred HHHHHHhHHHHHHHHHHHhCCCCCcEEE
Confidence 3689999999999999888888777776
No 39
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.43 E-value=40 Score=42.92 Aligned_cols=9 Identities=22% Similarity=0.774 Sum_probs=4.8
Q ss_pred HHhhHHHHh
Q 006756 530 TLCSLWQEN 538 (632)
Q Consensus 530 ~lcs~Wq~~ 538 (632)
.+-.+|+.-
T Consensus 1145 ~~~~~w~~~ 1153 (1311)
T TIGR00606 1145 IIRDLWRST 1153 (1311)
T ss_pred HHHHHHHHH
Confidence 344566654
No 40
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.32 E-value=48 Score=43.55 Aligned_cols=73 Identities=26% Similarity=0.445 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHh
Q 006756 392 EKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKER 471 (632)
Q Consensus 392 Eke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker 471 (632)
+-+.+.+.|-.|+.+|..++.+--|+...-+.++ ..++++++++..+.+.+...+..++++++.|-...+
T Consensus 1308 ~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q----------~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~ 1377 (1822)
T KOG4674|consen 1308 DYEKLKSEISRLKEELEEKENLIAELKKELNRLQ----------EKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALS 1377 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677777777766666555544444444 466777777777777777777777777777765544
Q ss_pred hcc
Q 006756 472 QSN 474 (632)
Q Consensus 472 ~sn 474 (632)
.-|
T Consensus 1378 e~~ 1380 (1822)
T KOG4674|consen 1378 EKN 1380 (1822)
T ss_pred HHH
Confidence 433
No 41
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.23 E-value=42 Score=42.73 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHH
Q 006756 396 ALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLD 457 (632)
Q Consensus 396 ~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~ 457 (632)
+...-++|..++..++.|+-++.+|+..++-..- +-.++...|..|..++.....+++
T Consensus 869 l~~~klkl~~~l~~r~~le~~L~el~~el~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1311)
T TIGR00606 869 LKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR----EIKDAKEQDSPLETFLEKDQQEKE 926 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4555566666778888888888888777654332 122334444444444444444443
No 42
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=91.54 E-value=11 Score=44.61 Aligned_cols=205 Identities=22% Similarity=0.237 Sum_probs=108.1
Q ss_pred hHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006756 250 SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAF----VEETRKMQRLARDNVRRILEEQEKLSCE 325 (632)
Q Consensus 250 k~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~y----neE~~kmQ~~ar~~~~rI~~e~ekl~~e 325 (632)
........+.-.+...+..+...+..+.-...++..+-.+...++... .+...+++..+.+...+...+...+..+
T Consensus 111 ~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 190 (670)
T KOG0239|consen 111 ELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLSKVTPENSLSLLDLALKESLKLESDLGDLVTE 190 (670)
T ss_pred ccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccccccchhhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444445555555555555666666666666666665544332211 2223335557888888888888888888
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 326 LETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLEK 405 (632)
Q Consensus 326 Le~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~Lek 405 (632)
|+..+...+.-..+|.. ...++..|+.... ....+..++..|+.
T Consensus 191 l~~v~~~~~~~~~~l~~----~~~~~~~l~~~~~--------------------------------~~~~~~~~~~~l~~ 234 (670)
T KOG0239|consen 191 LEHVTNSISELESVLKS----AQEERRVLADSLG--------------------------------NYADLRRNIKPLEG 234 (670)
T ss_pred HHHHHHHHHHHHHHhhh----hHHHHHHHHHHhh--------------------------------hhhhHHHhhhhhhh
Confidence 88777777776666665 2223333332211 11111222222222
Q ss_pred HhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHH
Q 006756 406 QLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELI 485 (632)
Q Consensus 406 qL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI 485 (632)
......+- |..|+..|+.+++-..+-...+.....++++-+..-..-+..+.+++..|+.++ .-+.+|++|=
T Consensus 235 ~~~~~~~~---i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-----~e~~~r~kL~ 306 (670)
T KOG0239|consen 235 LESTIKKK---IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-----KEKEERRKLH 306 (670)
T ss_pred hhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 22221111 444444444444433222334444455555555544455666778888887655 2346788887
Q ss_pred HhhhhccCCccccccc
Q 006756 486 QGLSDLIGARTNIGVK 501 (632)
Q Consensus 486 ~~l~~~~~~~~~IgiK 501 (632)
+-+.++ ..||.|.
T Consensus 307 N~i~eL---kGnIRV~ 319 (670)
T KOG0239|consen 307 NEILEL---KGNIRVF 319 (670)
T ss_pred HHHHHh---hcCceEE
Confidence 777766 4467764
No 43
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.28 E-value=46 Score=41.27 Aligned_cols=106 Identities=16% Similarity=0.198 Sum_probs=59.7
Q ss_pred HHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006756 251 KIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKK 330 (632)
Q Consensus 251 ~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~ 330 (632)
....+.+++..|+....++..+.+.++.+...+...-++...|-++--.||-.--..-.......-.+.-+...-|..+.
T Consensus 242 ~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~ 321 (1174)
T KOG0933|consen 242 AEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKK 321 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666777777776666666665555555555544444433322222333333344445555566666
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHhhHH
Q 006756 331 KKLDSWSKQLNKREALTERERQKLDA 356 (632)
Q Consensus 331 ~eld~r~k~L~k~~a~~~~er~kL~~ 356 (632)
..|+--.+.++++.-.-..+|++|.+
T Consensus 322 ~tl~~e~~k~e~i~~~i~e~~~~l~~ 347 (1174)
T KOG0933|consen 322 ETLNGEEEKLEEIRKNIEEDRKKLKE 347 (1174)
T ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHH
Confidence 66666666666666666666666653
No 44
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.88 E-value=54 Score=39.75 Aligned_cols=71 Identities=27% Similarity=0.417 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcH-----------------HHHHHHHHHH
Q 006756 384 RLVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDA-----------------AVQKKMKEMN 446 (632)
Q Consensus 384 kLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~-----------------~~~~k~~~l~ 446 (632)
+..+---.|...+..+|.++...| |+|--|.+.|..+|.-|..--..++. .|+.++++|+
T Consensus 479 ~q~e~~isei~qlqarikE~q~kl---~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldels 555 (1118)
T KOG1029|consen 479 KQRELMISEIDQLQARIKELQEKL---QKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELS 555 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344455555555554444 33444455555554444332222222 3455667777
Q ss_pred HHHHhHHhhHH
Q 006756 447 DELESKIDDLD 457 (632)
Q Consensus 447 ~~l~ek~~el~ 457 (632)
.+.+.|..+++
T Consensus 556 kE~esk~~eid 566 (1118)
T KOG1029|consen 556 KETESKLNEID 566 (1118)
T ss_pred HHHHHHHHhhh
Confidence 66666655554
No 45
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=89.06 E-value=58 Score=38.95 Aligned_cols=136 Identities=20% Similarity=0.222 Sum_probs=85.6
Q ss_pred HHhhhhhHHHHhHHHHHHHHHHHHHH---HHH----------HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Q 006756 274 CKFNETTMSLSRMLEEKDRLHYAFVE---ETR----------KMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQL 340 (632)
Q Consensus 274 ~k~ne~t~sL~r~meEk~~lh~~yne---E~~----------kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L 340 (632)
.++.+.|.+...+--|+..|.+.... |+. +-..+....++.....+..||.+|++-+.+|.....++
T Consensus 485 LKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev 564 (786)
T PF05483_consen 485 LKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEV 564 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666655443332 222 22334556677888888889999999999999888888
Q ss_pred HHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006756 341 NKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDA 409 (632)
Q Consensus 341 ~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~ 409 (632)
.-.--.++.-+|..+-++-+...+...|.=-.---+|.-++-.+.++.-..+...+-.+|..--+|+..
T Consensus 565 ~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~ 633 (786)
T PF05483_consen 565 KCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNV 633 (786)
T ss_pred HHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 866666666666776666555544444433222334556666777777666777776666665555553
No 46
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.71 E-value=55 Score=37.14 Aligned_cols=174 Identities=20% Similarity=0.240 Sum_probs=101.2
Q ss_pred CHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 006756 239 TVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFV--EETRKMQRLARDNVRRIL 316 (632)
Q Consensus 239 Ti~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yn--eE~~kmQ~~ar~~~~rI~ 316 (632)
+..|+-.+.+..-.. .+.-++..-.+.+++|+---+.+..--.+++.|+-+|...|+ ||+++=|..-... +|.
T Consensus 204 ~tedl~~e~mee~r~---di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE--~l~ 278 (502)
T KOG0982|consen 204 ETEDLLVEGMEEERI---DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEE--SLS 278 (502)
T ss_pred chhhhhhhhhhchhh---hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHH
Confidence 455555555543332 244556666677778877777777777788888888877666 5665555432221 122
Q ss_pred HHHHHhhHHHHH---------------HHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHH
Q 006756 317 EEQEKLSCELET---------------KKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADEN 381 (632)
Q Consensus 317 ~e~ekl~~eLe~---------------k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~ 381 (632)
+-++...|+.. +.+-|+.-..+|..+.|...+---||..++++-...-..+.+-..+.|+-...
T Consensus 279 -Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~r 357 (502)
T KOG0982|consen 279 -EEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVR 357 (502)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233322 22333333334444445444555566666666555566666655566665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHH
Q 006756 382 VLRLVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIE 418 (632)
Q Consensus 382 vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~ 418 (632)
+.--+-.+.++|++...=|..|-++|.--|.+-+..+
T Consensus 358 m~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 358 MNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLA 394 (502)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555556888888888888888888776555444433
No 47
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.62 E-value=60 Score=37.42 Aligned_cols=95 Identities=15% Similarity=0.172 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 006756 250 SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETK 329 (632)
Q Consensus 250 k~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k 329 (632)
...+.|..|...|...+.-+.-......+.......++.+++.....|..++..-+..-..--..+ .-...|...|..-
T Consensus 169 ~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a 247 (522)
T PF05701_consen 169 ENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAEA 247 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 556677788888888887777776666666666666667777777777777654444333333333 4445555666666
Q ss_pred HhhHHHHHHHHHHHHh
Q 006756 330 KKKLDSWSKQLNKREA 345 (632)
Q Consensus 330 ~~eld~r~k~L~k~~a 345 (632)
..+|..-..+|.....
T Consensus 248 ~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 248 SAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666654443
No 48
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=87.41 E-value=81 Score=38.72 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=22.3
Q ss_pred CCCCChhhHHHHhhcCCchhHHHHHHHHhhHHHHhhcCCCCc
Q 006756 504 GEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWH 545 (632)
Q Consensus 504 Geld~kpf~~ac~~k~~~~~~~~~a~~lcs~Wq~~l~~p~Wh 545 (632)
|-+++-.|+..- .+.+-..+..+-..|-++|-++.=+
T Consensus 615 ~~~~~p~~Llst-----~~~~s~n~~~~e~~~~~yla~~~d~ 651 (980)
T KOG0980|consen 615 RCLTSPDFLLST-----AENASVNATQFETSFNNYLADGDDA 651 (980)
T ss_pred CcCCCHHHHHHH-----HHHHHHHHHHHHHHHhhhcCCchhh
Confidence 455555565543 2355566666777788887776544
No 49
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=87.29 E-value=37 Score=34.69 Aligned_cols=134 Identities=19% Similarity=0.286 Sum_probs=81.4
Q ss_pred HhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006756 246 EDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCE 325 (632)
Q Consensus 246 E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~e 325 (632)
+..-..++.+..|...|...+++.+..|..|......|+ +.|..|++.++... +..-+.+.-...|+.
T Consensus 12 d~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR----------~ElI~ELkqsKkly-dnYYkL~~KY~~LK~- 79 (196)
T PF15272_consen 12 DQLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLR----------QELINELKQSKKLY-DNYYKLYSKYQELKK- 79 (196)
T ss_pred HHHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHH----------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-
Confidence 344577889999999999999999999999998887776 66777777776643 444455555555554
Q ss_pred HHHHHhhHHHHHHHHHH----HHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006756 326 LETKKKKLDSWSKQLNK----REALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKIL 401 (632)
Q Consensus 326 Le~k~~eld~r~k~L~k----~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil 401 (632)
+-.+...|..+...|++ +.+..+...+++.++.-. +. -....|..++++++-+...+|.
T Consensus 80 ~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~-------~~----------~r~~el~~~r~~e~~~YesRI~ 142 (196)
T PF15272_consen 80 SSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLS-------LE----------LRNKELQNERERERIAYESRIA 142 (196)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HH----------HHHHHHHhHHHHHHHHHHHHHH
Confidence 22233333333333332 223333333333322211 11 1122355666677777888888
Q ss_pred HHHHHhh
Q 006756 402 QLEKQLD 408 (632)
Q Consensus 402 ~LekqL~ 408 (632)
+||.||.
T Consensus 143 dLE~~L~ 149 (196)
T PF15272_consen 143 DLERQLN 149 (196)
T ss_pred HHHHHHH
Confidence 8888776
No 50
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.84 E-value=1e+02 Score=39.21 Aligned_cols=52 Identities=25% Similarity=0.187 Sum_probs=28.1
Q ss_pred cccCcccHHHHHHHHhhHHHHHHHHHHHHHh-h--hh---cCCCCcccccccccccCcc
Q 006756 558 EIIDEEDEKIKSLKELGDEIYMAVTTALKEL-N--EY---NPSGRYVIPDLWNFKEGRK 610 (632)
Q Consensus 558 eii~edD~kL~~Lke~Geev~~aV~~Al~E~-n--ey---N~sgry~v~elWN~ke~rk 610 (632)
+|+..|+++.+.+..- -.|-.|+++-|-|| | .| +++|+++.--+=|=+|.||
T Consensus 965 ~i~~~d~efs~~~~~e-~~v~~aa~~kl~eif~r~~~~i~~~~~~~t~~l~kkE~EkrK 1022 (1317)
T KOG0612|consen 965 EIVLRDAEFSKKLVTE-RDVKHAAVNKLAEIFNRKTSLIPGKKSTNTLDLRKKEKEKRK 1022 (1317)
T ss_pred hHhhccHHHHhhhhhH-HHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHH
Confidence 5677777777766511 23444555545443 2 22 3445455555556677777
No 51
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=86.64 E-value=0.36 Score=38.57 Aligned_cols=23 Identities=26% Similarity=0.917 Sum_probs=18.0
Q ss_pred CeeeccCCCCCCcCccCchhHHhhhcc
Q 006756 38 GTLRCPFCSGKKKQDYKHKDLLQHASG 64 (632)
Q Consensus 38 ~~~~CP~C~gkkK~dy~~~~LLqHA~g 64 (632)
.+|.||||. + .++...|+.|-..
T Consensus 1 ~~f~CP~C~-~---~~~~~~L~~H~~~ 23 (54)
T PF05605_consen 1 DSFTCPYCG-K---GFSESSLVEHCED 23 (54)
T ss_pred CCcCCCCCC-C---ccCHHHHHHHHHh
Confidence 379999997 3 3778899988654
No 52
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.32 E-value=25 Score=39.98 Aligned_cols=89 Identities=20% Similarity=0.405 Sum_probs=69.9
Q ss_pred HHHHHHHHHhh-HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHH
Q 006756 398 SKILQLEKQLD-AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDE 476 (632)
Q Consensus 398 ~kil~LekqL~-~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndE 476 (632)
.+++.|-+|-+ -+|.|.-+..+|+..|.+. +-++++ ..+|.+|+.+|+-..++.+..+.++-+|...--+-.+.
T Consensus 307 ~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~----e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~d 381 (521)
T KOG1937|consen 307 KQMEELTQQWEDTRQPLLQKKLQLREELKNL----ETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDD 381 (521)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc----cchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCch
Confidence 35666666654 5777887777787777654 345566 78999999999999999999999999999877777777
Q ss_pred HHHHHHHHHHhhhhccC
Q 006756 477 LQEARRELIQGLSDLIG 493 (632)
Q Consensus 477 Lq~aRk~lI~~l~~~~~ 493 (632)
.| |+..+.++.++.+
T Consensus 382 v~--rk~ytqrikEi~g 396 (521)
T KOG1937|consen 382 VQ--RKVYTQRIKEIDG 396 (521)
T ss_pred hH--HHHHHHHHHHHHh
Confidence 77 9999999888754
No 53
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=86.22 E-value=71 Score=36.84 Aligned_cols=39 Identities=38% Similarity=0.546 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhh-------hHHHhhhhHHHHh
Q 006756 390 KVEKEEALSKILQLEKQLDAKQKLEM-------EIEDLKGKLEVMK 428 (632)
Q Consensus 390 krEke~~~~kil~LekqL~~kQ~LEL-------Ei~qLkG~L~VmK 428 (632)
+.+.+.+..++.+|..++...+.|+- +|.-|+..|..-+
T Consensus 217 ~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~ 262 (522)
T PF05701_consen 217 EKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAK 262 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888777765 4444555444333
No 54
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=86.20 E-value=54 Score=35.48 Aligned_cols=93 Identities=24% Similarity=0.335 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhHHhhhhhhH---HHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHH----------HHH
Q 006756 395 EALSKILQLEKQLDAKQKLEMEI---EDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDE----------MES 461 (632)
Q Consensus 395 ~~~~kil~LekqL~~kQ~LELEi---~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~----------~e~ 461 (632)
.+..+|-+|+++|...++-.-.- +.|.....-.+-- -.++..+|.+|..+.++.-.+|-- --+
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~----~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkead 210 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKK----AREIHEKIQELANEAQEYHEEMIKLFEEADELRKEAD 210 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888887776543333 3333333322221 235555666655555544444321 111
Q ss_pred hhHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q 006756 462 LNKTLIAKERQSNDELQEARRELIQGLSDL 491 (632)
Q Consensus 462 ~nq~L~~ker~sndELq~aRk~lI~~l~~~ 491 (632)
.-..-+++-+..-|++-++...+-+-|.++
T Consensus 211 e~he~~ve~~~~~~e~~ee~~~~~~elre~ 240 (294)
T COG1340 211 ELHEEFVELSKKIDELHEEFRNLQNELREL 240 (294)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 122233444444455555555554444443
No 55
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.02 E-value=1.2e+02 Score=39.47 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=19.8
Q ss_pred CCcHHHHHHHHHHHHHHHhHHhhHHHHHH
Q 006756 433 EDDAAVQKKMKEMNDELESKIDDLDEMES 461 (632)
Q Consensus 433 ~~d~~~~~k~~~l~~~l~ek~~el~~~e~ 461 (632)
=.++++...++.....+.++...+.+++.
T Consensus 435 ~SdEeLe~~LenF~aklee~e~qL~elE~ 463 (1486)
T PRK04863 435 LTADNAEDWLEEFQAKEQEATEELLSLEQ 463 (1486)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777777765543
No 56
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=84.01 E-value=1e+02 Score=37.83 Aligned_cols=96 Identities=22% Similarity=0.282 Sum_probs=62.4
Q ss_pred HHhHHHhhhhhHHHHHHHhhhhhHHHHhH-------HHHHHHHHHHHHHHHHHH-------HH---------HHHHHHHH
Q 006756 258 LASKIDMKNEDLSELQCKFNETTMSLSRM-------LEEKDRLHYAFVEETRKM-------QR---------LARDNVRR 314 (632)
Q Consensus 258 L~n~I~~knk~l~elE~k~ne~t~sL~r~-------meEk~~lh~~yneE~~km-------Q~---------~ar~~~~r 314 (632)
-..+|+.|.+.+.+||-+....+--.... .|++.+||-...+|+.+. .+ .+-+|.+.
T Consensus 920 sicl~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~ke 999 (1424)
T KOG4572|consen 920 SICLIEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKE 999 (1424)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34567778888888877766554443332 244556665555544332 12 23345555
Q ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHh
Q 006756 315 ILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQK 353 (632)
Q Consensus 315 I~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~k 353 (632)
.--++.-+|.+||+++++|+.--.+++++++.--++..+
T Consensus 1000 fE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~ 1038 (1424)
T KOG4572|consen 1000 FEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEG 1038 (1424)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 556777889999999999999999998888876655543
No 57
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.01 E-value=1.2e+02 Score=37.60 Aligned_cols=105 Identities=13% Similarity=0.109 Sum_probs=49.0
Q ss_pred HhHHhhHHHHHHhhHHHHH-HH--hhccHHHHHHHHHHHHhhhhccCCcccccccccCCCCChhhHHHHhhcCCch-hHH
Q 006756 450 ESKIDDLDEMESLNKTLIA-KE--RQSNDELQEARRELIQGLSDLIGARTNIGVKRLGEIDPKPFQDACKNKFPLE-EAQ 525 (632)
Q Consensus 450 ~ek~~el~~~e~~nq~L~~-ke--r~sndELq~aRk~lI~~l~~~~~~~~~IgiKrmGeld~kpf~~ac~~k~~~~-~~~ 525 (632)
......++..=+..||++. +| +.-||.||+-+.+-...-.+. ...|||+ --..|-+--..+- +-|... |.+
T Consensus 511 ~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees---~q~~s~~-~et~dyk~~fa~s-kayaraie~Q 585 (1243)
T KOG0971|consen 511 KRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEES---QQPPSVD-PETFDYKIKFAES-KAYARAIEMQ 585 (1243)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHh---cCCCCCc-hhhhHHHHHHHHh-HHHHHHHHHH
Confidence 3445556666677777653 33 345677777776544333322 4467777 2223322211111 113221 455
Q ss_pred HHHHHHhhHHHHhhcCCCCcceEEEEecCccccc
Q 006756 526 VEASTLCSLWQENLKATEWHPFKIIHVEGTPKEI 559 (632)
Q Consensus 526 ~~a~~lcs~Wq~~l~~p~WhPFk~v~v~g~~kei 559 (632)
+++.++---=++-=-=..+-|=-..-++|.+--|
T Consensus 586 lrqiEv~~a~rh~~~l~AFmPdsFlrrGGdhDsv 619 (1243)
T KOG0971|consen 586 LRQIEVAQANRHMSLLTAFMPDSFLRRGGDHDSV 619 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHhhccCCCCccee
Confidence 5555554332221111234444445668876433
No 58
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.21 E-value=1.1e+02 Score=36.42 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=16.5
Q ss_pred HhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhh
Q 006756 246 EDAQSKIHVVAHLASKIDMKNEDLSELQCKFNE 278 (632)
Q Consensus 246 E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne 278 (632)
+..+.....|..|++....-..++++||.+..+
T Consensus 29 qr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e 61 (617)
T PF15070_consen 29 QRMQQMSEEVRTLKEEKEHDISRVQELERSLSE 61 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555555443
No 59
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=82.88 E-value=2.9 Score=32.89 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=39.6
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeec-cCCCCcceEEEEeCCChhchhhHHH
Q 006756 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFW-NEENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 123 gII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~-~~~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
+.|-|+|. ..+...|++ |+.|.+. .+.... ....+.|+++|.|.+ +..-..|+.
T Consensus 1 l~v~nlp~--------~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~-~~~a~~a~~ 57 (70)
T PF00076_consen 1 LYVGNLPP--------DVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFES-EEDAEKALE 57 (70)
T ss_dssp EEEESETT--------TSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESS-HHHHHHHHH
T ss_pred cEEcCCCC--------cCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcC-HHHHHHHHH
Confidence 35778865 457789999 9999987 444444 345688999999987 666666666
No 60
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=82.64 E-value=1.3e+02 Score=36.82 Aligned_cols=213 Identities=20% Similarity=0.323 Sum_probs=102.6
Q ss_pred CCCCHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 236 KLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRI 315 (632)
Q Consensus 236 dLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI 315 (632)
|++.--++..+..+...+--+.|-..|+.....|..-+..++..+.++..+-+|+..+.-... +|+.|-...-..+..+
T Consensus 319 d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~-~l~d~~d~~e~ki~~L 397 (775)
T PF10174_consen 319 DMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIE-DLRDMLDKKERKINVL 397 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 445555666666666666666677777777777777777777777777777777655433222 2444444444444444
Q ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHH--HHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHH-hhhHHHHHHHHHHHHH
Q 006756 316 LEEQEKLSCELETKKKKLDSWSKQLNK--REALTERERQKLDADRQQNDLRNNSLQLASMEQK-KADENVLRLVEEQKVE 392 (632)
Q Consensus 316 ~~e~ekl~~eLe~k~~eld~r~k~L~k--~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~-kade~vlkLve~hkrE 392 (632)
-...++|...|-.+-+.|+.-..-|.- -...++.-+-.|++=......-.+.|. ++. .+.-.-..=.+.++++
T Consensus 398 q~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~----e~r~~~e~e~~Eele~~~~e 473 (775)
T PF10174_consen 398 QKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLE----EQRERAEKERQEELETYQKE 473 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 444444444443333333322211110 000011111111111000000011111 111 1111222234778889
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHH
Q 006756 393 KEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEME 460 (632)
Q Consensus 393 ke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e 460 (632)
-+.+-.++-.|++.|..++- .+..+++...-+-.=..--|++ |+.|...|+-+.++...|+
T Consensus 474 ~~~lk~~~~~LQ~eLsEk~~---~l~~~kee~s~l~s~~~K~~s~----i~~l~I~lEk~rek~~kl~ 534 (775)
T PF10174_consen 474 LKELKAKLESLQKELSEKEL---QLEDAKEEASKLASSQEKKDSE----IERLEIELEKKREKHEKLE 534 (775)
T ss_pred HHHHHHHHHHHhhhhHHHHH---HHHHhhhHHHHHhhccchhhhH----HHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999883 2234444433332211111333 5555555555555544433
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=82.48 E-value=1.1e+02 Score=36.88 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhh
Q 006756 397 LSKILQLEKQLD 408 (632)
Q Consensus 397 ~~kil~LekqL~ 408 (632)
...|-+|+.+|.
T Consensus 551 E~E~~~lr~elk 562 (697)
T PF09726_consen 551 ESELKKLRRELK 562 (697)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 62
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=82.47 E-value=1.5e+02 Score=37.70 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=25.4
Q ss_pred hhhhhhhccCCCCHHHHHHHhhhhHHHHHHHHHhHHHhhh
Q 006756 227 IGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKN 266 (632)
Q Consensus 227 iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~kn 266 (632)
|..-..+. +|.+-++-++...-+-+..|+.|.|.-..-+
T Consensus 1497 vA~~vL~l-~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~ 1535 (1758)
T KOG0994|consen 1497 VAEEVLAL-ELPLTPEQIQQLTGEIQERVASLPNVDAILS 1535 (1758)
T ss_pred HHHHHHhc-cCCCCHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44445555 7888887777777777777777766544443
No 63
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=82.02 E-value=1.3e+02 Score=36.37 Aligned_cols=100 Identities=26% Similarity=0.291 Sum_probs=70.4
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 326 LETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLEK 405 (632)
Q Consensus 326 Le~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~Lek 405 (632)
|-+.-+.+..+...|+++....-....++..|.. .+..+....++---++.+.++.-+-+.+..++++-+++.
T Consensus 515 l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~-------~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~ 587 (698)
T KOG0978|consen 515 LKASVDKLELKIGKLEEQERGLTSNESKLIKELT-------TLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQE 587 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666665555555555555544 345566666777778888888888888888888888887
Q ss_pred HhhHH-----------hhhhhhHHHhhhhHHHHhhcCC
Q 006756 406 QLDAK-----------QKLEMEIEDLKGKLEVMKHLGD 432 (632)
Q Consensus 406 qL~~k-----------Q~LELEi~qLkG~L~VmKh~~~ 432 (632)
++.+. +.||-|+.+|+++|.-++.+..
T Consensus 588 ~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 588 QYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 77542 5688888999999998888754
No 64
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=80.97 E-value=29 Score=35.12 Aligned_cols=86 Identities=16% Similarity=0.253 Sum_probs=67.2
Q ss_pred hHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 006756 250 SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETK 329 (632)
Q Consensus 250 k~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k 329 (632)
++...+.++...+....+.+..|+..+......+.++-.||+.|...|+.=|...|+.+--... =|..-|.+.
T Consensus 83 kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~-------lLEkKl~~l 155 (201)
T PF13851_consen 83 KDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNL-------LLEKKLQAL 155 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 6667788899999999999999999999999999999999999999999888877776654332 344445555
Q ss_pred HhhHHHHHHHHHH
Q 006756 330 KKKLDSWSKQLNK 342 (632)
Q Consensus 330 ~~eld~r~k~L~k 342 (632)
...|+.+..||..
T Consensus 156 ~~~lE~keaqL~e 168 (201)
T PF13851_consen 156 SEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 5555666666653
No 65
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=80.63 E-value=1.8e+02 Score=37.21 Aligned_cols=61 Identities=13% Similarity=0.281 Sum_probs=49.1
Q ss_pred chhhhhhhcc-CCCCHHHHHHHhhh----hHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhH
Q 006756 226 PIGEYLRQEG-KLRTVSDIVQEDAQ----SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRM 286 (632)
Q Consensus 226 ~iG~~LrK~g-dLKTi~ei~~E~~r----k~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~ 286 (632)
.|++||-..+ |.-||.++.++-.. -+-.+|.+|+++|..--..|..++.-++.|---++|+
T Consensus 1479 ~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra 1544 (1758)
T KOG0994|consen 1479 QVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARA 1544 (1758)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHH
Confidence 4888887766 88888887766553 5678999999999999999999999988887666654
No 66
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=80.45 E-value=1.3e+02 Score=35.38 Aligned_cols=135 Identities=21% Similarity=0.243 Sum_probs=74.2
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 006756 280 TMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQ 359 (632)
Q Consensus 280 t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~ 359 (632)
..+.+-++++-.-+.+.|..||+..+..++...- -+..+-.+.+|...+++|-+. .+.....|-.|-....+.+=
T Consensus 203 ~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--~~~r~~F~~eL~~Ai~eiRaq---ye~~~~~nR~diE~~Y~~kI 277 (546)
T KOG0977|consen 203 QNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--ADNREYFKNELALAIREIRAQ---YEAISRQNRKDIESWYKRKI 277 (546)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc--ccchHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHH
Confidence 3445556677777788888888887777665541 233344556677777776542 22222222222222221111
Q ss_pred hhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHh
Q 006756 360 QNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMK 428 (632)
Q Consensus 360 kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmK 428 (632)
.+ -+.+-..+..++..+.|.|++.-. .-..+..++-+||.. -+.|+-.|+.|+-+|.=-.
T Consensus 278 ~~--i~~~~~~~~~~~~~~rEEl~~~R~----~i~~Lr~klselE~~---n~~L~~~I~dL~~ql~e~~ 337 (546)
T KOG0977|consen 278 QE--IRTSAERANVEQNYAREELRRIRS----RISGLRAKLSELESR---NSALEKRIEDLEYQLDEDQ 337 (546)
T ss_pred HH--HHhhhccccchhHHHHHHHHHHHh----cccchhhhhcccccc---ChhHHHHHHHHHhhhhhhh
Confidence 11 122334566677777777766543 233456666666654 3567888888877765333
No 67
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.96 E-value=83 Score=33.04 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhhH----HhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHH
Q 006756 390 KVEKEEALSKILQLEKQLDA----KQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEME 460 (632)
Q Consensus 390 krEke~~~~kil~LekqL~~----kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e 460 (632)
+.|--.+...|..|+.+|+. +..||-.|..|...+.... ......|..+..+|.+-..+|...-
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~-------~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEER-------EEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHH-------HHHHHhhhccchhHHHHHHHHHHHH
Confidence 44555555666666655543 3345555555554444322 2334445555555555555554433
No 68
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=79.93 E-value=1.4e+02 Score=35.43 Aligned_cols=34 Identities=38% Similarity=0.567 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHH
Q 006756 382 VLRLVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLE 425 (632)
Q Consensus 382 vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~ 425 (632)
+.+-+.+|+.+-..++.-.- .|..||..|.|+|.
T Consensus 496 Iv~NI~KQk~eI~KIl~DTr----------~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 496 IVKNIRKQKEEIEKILSDTR----------ELQKEINSLTGKLD 529 (594)
T ss_pred HHHhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 44455555555555544444 45556777888775
No 69
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=79.52 E-value=79 Score=32.52 Aligned_cols=127 Identities=13% Similarity=0.272 Sum_probs=57.7
Q ss_pred CHHHHHHHhhhhHHHHHHHHHhHHHhh---hhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 239 TVSDIVQEDAQSKIHVVAHLASKIDMK---NEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRI 315 (632)
Q Consensus 239 Ti~ei~~E~~rk~~~lv~~L~n~I~~k---nk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI 315 (632)
||+.++.+..+.....-..+...+..+ ..+|.-||..|+.......++ ......|...-..+...+.++..+|
T Consensus 52 ~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~----K~vi~~~k~NEE~Lkk~~~ey~~~l 127 (207)
T PF05010_consen 52 TIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQ----KEVIEGYKKNEETLKKCIEEYEERL 127 (207)
T ss_pred HHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 566666555443332223333333332 334444444444332222221 1222333222223334444444444
Q ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhH
Q 006756 316 LEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQ 369 (632)
Q Consensus 316 ~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~ 369 (632)
-.+.++...--.--...|+.=.++++........+-..|....++..++..||.
T Consensus 128 ~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe 181 (207)
T PF05010_consen 128 KKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLE 181 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333334555666666666666666666666666665554444443
No 70
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=79.44 E-value=80 Score=32.50 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=16.4
Q ss_pred HHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhH
Q 006756 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRM 286 (632)
Q Consensus 252 ~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~ 286 (632)
..-|+.|.+.|.-....|...+..+..++..|..+
T Consensus 35 E~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~ 69 (237)
T PF00261_consen 35 EAEVASLQRRIQLLEEELERAEERLEEATEKLEEA 69 (237)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 71
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=79.11 E-value=95 Score=33.20 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhh
Q 006756 383 LRLVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKG 422 (632)
Q Consensus 383 lkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG 422 (632)
.-++++-..--..+..++.-||-+||.||-|=-++|+||.
T Consensus 132 i~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkd 171 (333)
T KOG1853|consen 132 IYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKD 171 (333)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445555555566778888999999999999888888874
No 72
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.69 E-value=83 Score=32.30 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=10.0
Q ss_pred HHHHhhHHHHhhcCCCCcc
Q 006756 528 ASTLCSLWQENLKATEWHP 546 (632)
Q Consensus 528 a~~lcs~Wq~~l~~p~WhP 546 (632)
.+.|.+.=-.+|.=|==||
T Consensus 204 vahlv~lls~yL~v~Lpy~ 222 (302)
T PF10186_consen 204 VAHLVSLLSRYLGVPLPYP 222 (302)
T ss_pred HHHHHHHHHHHhCCCCCCC
Confidence 3445555556666554333
No 73
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=78.41 E-value=1.5e+02 Score=35.88 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=60.8
Q ss_pred eeecCCCCCC-Cchh-hhhhhccCCCCHHHHHHHh---hhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH
Q 006756 215 FARADDNTSE-GPIG-EYLRQEGKLRTVSDIVQED---AQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE 289 (632)
Q Consensus 215 vAradDy~~~-g~iG-~~LrK~gdLKTi~ei~~E~---~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE 289 (632)
+|+..|.+-. ..+| .||-..++=.|+.+++.+- ....+..|--+-++.-.-+..|.-.|.+...+-. ...+.+
T Consensus 62 ~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r--ae~lpe 139 (916)
T KOG0249|consen 62 MAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR--AETLPE 139 (916)
T ss_pred HhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh--hhhhhh
Confidence 4566666533 2233 4555556666666654322 2222333333334444555555555555543322 233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Q 006756 290 KDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLD 334 (632)
Q Consensus 290 k~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld 334 (632)
-+.-++.-+.+.. ++++|.-.|.+-.+||..+++..-.||.
T Consensus 140 veael~qr~~al~----~aee~~~~~eer~~kl~~~~qe~naeL~ 180 (916)
T KOG0249|consen 140 VEAELAQRNAALT----KAEEHSGNIEERTRKLEEQLEELNAELQ 180 (916)
T ss_pred hHHHHHHHHHHHH----HHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555554 4677777788888888888877766665
No 74
>PRK03918 chromosome segregation protein; Provisional
Probab=78.11 E-value=1.6e+02 Score=35.35 Aligned_cols=7 Identities=29% Similarity=0.311 Sum_probs=2.7
Q ss_pred HHHHHhc
Q 006756 85 KYLEVDL 91 (632)
Q Consensus 85 k~Le~dl 91 (632)
.++..-|
T Consensus 41 ~ai~~~l 47 (880)
T PRK03918 41 EAILVGL 47 (880)
T ss_pred HHHHHHh
Confidence 3333333
No 75
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.67 E-value=2e+02 Score=36.09 Aligned_cols=117 Identities=22% Similarity=0.284 Sum_probs=71.8
Q ss_pred eeeeecCCCCCCCchhhhhhhccCCCC-HHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHH
Q 006756 213 GWFARADDNTSEGPIGEYLRQEGKLRT-VSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKD 291 (632)
Q Consensus 213 GWvAradDy~~~g~iG~~LrK~gdLKT-i~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~ 291 (632)
-++|+..++|+-..=|+...+.|-|.- |-|- ...-+..++| +..-...+.+|+.++++ +++++++.+
T Consensus 631 ~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~-------krsrLe~~k~-~~~~~~~~~~l~~~L~~----~r~~i~~~~ 698 (1200)
T KOG0964|consen 631 LRLAKKHELNCITLSGDQVSKKGVLTGGYEDQ-------KRSRLELLKN-VNESRSELKELQESLDE----VRNEIEDID 698 (1200)
T ss_pred HHHHHhcCCCeEEeccceecccCCccccchhh-------hhhHHHHHhh-hHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 357899999988778888888887752 2221 1222333332 33444556777777776 677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-------hHHHHHHHHHHHHh
Q 006756 292 RLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKK-------KLDSWSKQLNKREA 345 (632)
Q Consensus 292 ~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~-------eld~r~k~L~k~~a 345 (632)
+-+.+.+-+|++.+ -....++.++++|+.++-.... .|.-..++|+.+.+
T Consensus 699 ~~i~q~~~~~qk~e----~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~ 755 (1200)
T KOG0964|consen 699 QKIDQLNNNMQKVE----NDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKT 755 (1200)
T ss_pred HHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777665543 2344455666677666655443 34555555554443
No 76
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=77.44 E-value=1.3e+02 Score=33.96 Aligned_cols=79 Identities=27% Similarity=0.244 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHH
Q 006756 390 KVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAK 469 (632)
Q Consensus 390 krEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~k 469 (632)
+||..++.+--.+|-.. |-.||.+|+|-|-- --|+..-.-..-+--=+|.-=|.=|+.++.++..-.+.|-
T Consensus 462 QrEnQELnaHNQELnnR------LaaEItrLRtlltg-dGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLk-- 532 (593)
T KOG4807|consen 462 QRENQELNAHNQELNNR------LAAEITRLRTLLTG-DGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLK-- 532 (593)
T ss_pred HHhhHHHHHHHHHHhhH------HHHHHHHHHHHhcc-CCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHH--
Confidence 46666666665555544 45689999987641 1111110111112234566667778888887777666665
Q ss_pred HhhccHHHHHHHH
Q 006756 470 ERQSNDELQEARR 482 (632)
Q Consensus 470 er~sndELq~aRk 482 (632)
||||-|-+
T Consensus 533 -----DELQtalr 540 (593)
T KOG4807|consen 533 -----DELQTALR 540 (593)
T ss_pred -----HHHHHHHh
Confidence 77776644
No 77
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=77.32 E-value=92 Score=32.06 Aligned_cols=91 Identities=19% Similarity=0.394 Sum_probs=60.0
Q ss_pred HHHHHHHHHhHHHhhhhhHHHHHHHhhh---hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006756 251 KIHVVAHLASKIDMKNEDLSELQCKFNE---TTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELE 327 (632)
Q Consensus 251 ~~~lv~~L~n~I~~knk~l~elE~k~ne---~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe 327 (632)
.+..+..+.+.+..+.....++-.+|.+ ....+.++|++-++.+...-+|-.+-...+...+++|+.+...+..+|.
T Consensus 7 ~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~ 86 (207)
T PF05010_consen 7 LDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLN 86 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHH
Confidence 3445555555555544455555555544 3556778888888777777777766677777888899999999888888
Q ss_pred HHHhhHHHHHHHHH
Q 006756 328 TKKKKLDSWSKQLN 341 (632)
Q Consensus 328 ~k~~eld~r~k~L~ 341 (632)
|.-.....=-+..+
T Consensus 87 s~E~sfsdl~~rye 100 (207)
T PF05010_consen 87 SLEKSFSDLHKRYE 100 (207)
T ss_pred HHHhhHHHHHHHHH
Confidence 76655543333333
No 78
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=76.47 E-value=5.9 Score=31.82 Aligned_cols=57 Identities=23% Similarity=0.268 Sum_probs=40.2
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCC-ceeeeeccCCC-CcceEEEEeCCChhchhhHHHHHh
Q 006756 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP-VEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDFEK 188 (632)
Q Consensus 123 gII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p-~kv~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~lek 188 (632)
+.|-|+|. +.+...|.+ |+.|.+ .++....++.| .+|+|.|.|. +-.....|+.+.+
T Consensus 1 v~i~nlp~--------~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~-~~~~a~~al~~~~ 60 (70)
T PF14259_consen 1 VYISNLPP--------STTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFS-SEEDAKRALELLN 60 (70)
T ss_dssp EEEESSTT--------T--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEES-SHHHHHHHHHHHT
T ss_pred CEEeCCCC--------CCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeC-CHHHHHHHHHHCC
Confidence 35778875 346788899 888874 56777776654 4799999996 6667777777754
No 79
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=76.25 E-value=51 Score=39.94 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHH
Q 006756 313 RRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVE 392 (632)
Q Consensus 313 ~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrE 392 (632)
.+++.+-+..+.+++.+..+++....+++++.+.-+.++.+|++++++ ..+++.+.+-.++++-++|
T Consensus 519 ~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~-------------~~~~~~~~a~~~l~~a~~~ 585 (782)
T PRK00409 519 NELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK-------------LLEEAEKEAQQAIKEAKKE 585 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444433332 1223444555667776777
Q ss_pred HHHHHHHHHHH
Q 006756 393 KEEALSKILQL 403 (632)
Q Consensus 393 ke~~~~kil~L 403 (632)
-+++++++-++
T Consensus 586 ~~~~i~~lk~~ 596 (782)
T PRK00409 586 ADEIIKELRQL 596 (782)
T ss_pred HHHHHHHHHHh
Confidence 77777766654
No 80
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.24 E-value=2.2e+02 Score=35.91 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=70.4
Q ss_pred ceeeeeeecCCCCCCCchhhhhhhccCCCCHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH
Q 006756 210 RIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE 289 (632)
Q Consensus 210 ~LYGWvAradDy~~~g~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE 289 (632)
-|=|=+-..--+=++|+.| ++ .|=+-+..+. .+.++|..-|.+... ....+..++.+.+-..+.|..++-+
T Consensus 628 aldGtl~~ksGlmsGG~s~---~~-wdek~~~~L~----~~k~rl~eel~ei~~-~~~e~~~v~~~i~~le~~~~~~~~~ 698 (1141)
T KOG0018|consen 628 ALDGTLIHKSGLMSGGSSG---AK-WDEKEVDQLK----EKKERLLEELKEIQK-RRKEVSSVESKIHGLEMRLKYSKLD 698 (1141)
T ss_pred EeeeeEEeccceecCCccC---CC-cCHHHHHHHH----HHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566778888 44 4544444443 344555555655555 3336777777777666666655544
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHH
Q 006756 290 ----------KDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSW 336 (632)
Q Consensus 290 ----------k~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r 336 (632)
+++-++.++.+|...+-... .+.|.++.-+.-..+|+.+|++++.+
T Consensus 699 ~~~~k~~l~~~~~El~~~~~~i~~~~p~i~-~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 699 LEQLKRSLEQNELELQRTESEIDEFGPEIS-EIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666666666665555 66667777777777777777776654
No 81
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=75.10 E-value=2.6e+02 Score=36.10 Aligned_cols=72 Identities=21% Similarity=0.282 Sum_probs=42.8
Q ss_pred HHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhh
Q 006756 351 RQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKH 429 (632)
Q Consensus 351 r~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh 429 (632)
++++..+..+-...-..+++...++++.-.+...|-.. +.....+++.+|...|.||-+|..|...+.-...
T Consensus 828 k~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e-------~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s 899 (1294)
T KOG0962|consen 828 KSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNE-------LKEEKQKIERSLARLQQLEEDIEELSEEITRLDS 899 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444444444455566667777766555554444433 3445566677777788888888877766654433
No 82
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=74.04 E-value=90 Score=37.35 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=19.8
Q ss_pred HHhhHHhhhhhhHHHhhhhHHHHhhc
Q 006756 405 KQLDAKQKLEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 405 kqL~~kQ~LELEi~qLkG~L~VmKh~ 430 (632)
++..+..+|--+|++|+|...|-...
T Consensus 297 ~e~~~r~kL~N~i~eLkGnIRV~CRv 322 (670)
T KOG0239|consen 297 KEKEERRKLHNEILELKGNIRVFCRV 322 (670)
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEe
Confidence 33355557888899999999998775
No 83
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.70 E-value=2.3e+02 Score=34.88 Aligned_cols=49 Identities=8% Similarity=0.088 Sum_probs=33.0
Q ss_pred chhhhhhhccCCCCHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHH
Q 006756 226 PIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQC 274 (632)
Q Consensus 226 ~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~ 274 (632)
.|.+.+..+++.--...++.+.-.+-+.++..|++.|....-.++.+..
T Consensus 630 ~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ 678 (970)
T KOG0946|consen 630 LIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQ 678 (970)
T ss_pred HHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4566677777777777777777777777777777777666555555433
No 84
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=72.44 E-value=1.7e+02 Score=32.75 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=5.6
Q ss_pred HHHHhhhHHHHHhh
Q 006756 341 NKREALTERERQKL 354 (632)
Q Consensus 341 ~k~~a~~~~er~kL 354 (632)
+.+.+.-+.+|..|
T Consensus 138 DDlt~~LEKEReqL 151 (561)
T KOG1103|consen 138 DDLTAHLEKEREQL 151 (561)
T ss_pred chHHHHHHHHHHHH
Confidence 33344444444443
No 85
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=72.42 E-value=2e+02 Score=33.55 Aligned_cols=104 Identities=17% Similarity=0.355 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHhhhhhhHHHhhhhHH-HHhhcCC--CCcHHHHHHHHHHHHHHH
Q 006756 381 NVLRLVEEQKVEKEEALSKILQLEKQ-------LDAKQKLEMEIEDLKGKLE-VMKHLGD--EDDAAVQKKMKEMNDELE 450 (632)
Q Consensus 381 ~vlkLve~hkrEke~~~~kil~Lekq-------L~~kQ~LELEi~qLkG~L~-VmKh~~~--~~d~~~~~k~~~l~~~l~ 450 (632)
.+...+...+.+...+...|..|.+. +..-+.++-+++.|...+. +...+.. ..-+++...++++.+.|.
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~le 393 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLE 393 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 33444444555666666666666554 5667788888888888888 4444432 336888899999999999
Q ss_pred hHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHH
Q 006756 451 SKIDDLDEMESLNKTLIAKERQSNDELQEARREL 484 (632)
Q Consensus 451 ek~~el~~~e~~nq~L~~ker~sndELq~aRk~l 484 (632)
+-..+...+...-+.|-..|..+.+.|+..++.|
T Consensus 394 eie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 394 EIEKEQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888899988888888888888765
No 86
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=71.55 E-value=1.6e+02 Score=32.07 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=11.3
Q ss_pred HhhhhhhHHHhhhhHHHHhhcC
Q 006756 410 KQKLEMEIEDLKGKLEVMKHLG 431 (632)
Q Consensus 410 kQ~LELEi~qLkG~L~VmKh~~ 431 (632)
+++++-+|+.+...++--++..
T Consensus 248 k~e~~~~I~~ae~~~~~~r~~t 269 (312)
T smart00787 248 KSELNTEIAEAEKKLEQCRGFT 269 (312)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC
Confidence 4455555555555555444443
No 87
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=71.53 E-value=2.1e+02 Score=33.40 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=29.7
Q ss_pred ccCCCCHHHHHHHhhhhHHHHHHHHHhHHHhhhh---hHHHHHHHhhhhhHHHHhHHHHHHHHHHH
Q 006756 234 EGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNE---DLSELQCKFNETTMSLSRMLEEKDRLHYA 296 (632)
Q Consensus 234 ~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk---~l~elE~k~ne~t~sL~r~meEk~~lh~~ 296 (632)
.++|+.+.+.+..-...-+++-+.|...+..++. +...+......+......+..|-+.+-++
T Consensus 274 ~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 274 ELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3466666665555555555555555555555442 22233333333333333444444444343
No 88
>PTZ00121 MAEBL; Provisional
Probab=71.20 E-value=3.4e+02 Score=35.76 Aligned_cols=71 Identities=21% Similarity=0.340 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 006756 285 RMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQ 359 (632)
Q Consensus 285 r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~ 359 (632)
|..+|...|-..-.+|.+..|..-.+.+.+++.+..+.+.+-.-+..+-..+..+|- ..+.+|+++++.++
T Consensus 1570 r~aeE~k~~a~rkaee~~~~~~~~~~~~~~~~~~~~~~kae~~kk~ee~~kk~E~~k----k~eeekKk~Eelkk 1640 (2084)
T PTZ00121 1570 KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK----KAEEEKKKVEQLKK 1640 (2084)
T ss_pred HHHhhhhhhhhhhHHHHHhHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 333444455666677777777766677777777777766655444333333333333 23445555544433
No 89
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=71.19 E-value=1.4e+02 Score=31.42 Aligned_cols=42 Identities=26% Similarity=0.494 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hHHhhhhhhHHHhhhh
Q 006756 382 VLRLVEEQKVEKEEALSKILQLEKQL-DAKQKLEMEIEDLKGK 423 (632)
Q Consensus 382 vlkLve~hkrEke~~~~kil~LekqL-~~kQ~LELEi~qLkG~ 423 (632)
++...++-..+.+.+..+|..+|+.+ +.++.++.++..+..+
T Consensus 115 l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~ 157 (239)
T COG1579 115 LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE 157 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566666666666665 3455666666555443
No 90
>PRK04863 mukB cell division protein MukB; Provisional
Probab=70.84 E-value=3.4e+02 Score=35.67 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHh
Q 006756 437 AVQKKMKEMNDELESKIDDLDEMESL 462 (632)
Q Consensus 437 ~~~~k~~~l~~~l~ek~~el~~~e~~ 462 (632)
....++.++..+|.+.+.+|..++.-
T Consensus 446 nF~aklee~e~qL~elE~kL~~lea~ 471 (1486)
T PRK04863 446 EFQAKEQEATEELLSLEQKLSVAQAA 471 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666655443
No 91
>smart00362 RRM_2 RNA recognition motif.
Probab=70.21 E-value=9.8 Score=28.96 Aligned_cols=46 Identities=26% Similarity=0.297 Sum_probs=32.3
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCCCcceEEEEeCCC
Q 006756 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 123 gII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~~Gh~G~aIV~F~~d 176 (632)
++|-|+|. +.+...|++ |..|.+.. +....++..++|++.|.|.+.
T Consensus 2 v~i~~l~~--------~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~ 49 (72)
T smart00362 2 LFVGNLPP--------DVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESE 49 (72)
T ss_pred EEEcCCCC--------cCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCH
Confidence 56777754 346678888 88898754 444444455789999999864
No 92
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=69.62 E-value=2.7e+02 Score=33.97 Aligned_cols=59 Identities=24% Similarity=0.421 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhh---c-CCCCcHHHHHHHHHHHHHHHhHHhh
Q 006756 397 LSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKH---L-GDEDDAAVQKKMKEMNDELESKIDD 455 (632)
Q Consensus 397 ~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh---~-~~~~d~~~~~k~~~l~~~l~ek~~e 455 (632)
..||-.|++|..++=.--+-.-.||++.+-+|- . +..-|.+.+.||+.|..+++.+..+
T Consensus 648 k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~ 710 (762)
T PLN03229 648 QEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAE 710 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 446666666665543333333445555555444 2 2234677778888888877766654
No 93
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.71 E-value=2.5e+02 Score=33.19 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=42.4
Q ss_pred chhhhhhhccCCCCHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhh
Q 006756 226 PIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNET 279 (632)
Q Consensus 226 ~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~ 279 (632)
+.+.|++---+ ++++..|-..+-.++...++++|+...+...+|+.++++.
T Consensus 204 ~Y~~fl~g~d~---~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ 254 (581)
T KOG0995|consen 204 SYTSFLKGEDN---SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINER 254 (581)
T ss_pred HHHHHhccCcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666665433 7889999999999999999999999999999999999844
No 94
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=68.58 E-value=86 Score=38.04 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=14.5
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHH
Q 006756 322 LSCELETKKKKLDSWSKQLNKREALTERERQKLDAD 357 (632)
Q Consensus 322 l~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~E 357 (632)
+=..|+.++++++....++++..+..+..++.|+++
T Consensus 516 li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~ 551 (771)
T TIGR01069 516 LIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQE 551 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444344444444433
No 95
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=67.90 E-value=81 Score=30.59 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHH---HHHHHHHHHHHHHHHHH
Q 006756 248 AQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLE---EKDRLHYAFVEETRKMQ 305 (632)
Q Consensus 248 ~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~me---Ek~~lh~~yneE~~kmQ 305 (632)
.+.-++-|..|.+.+..-...-.+.......+..+++.-.. .++....+|.+++++|.
T Consensus 31 ~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~ 91 (146)
T PF08702_consen 31 ERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI 91 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH
Confidence 33333444444444443333333333333333334333332 23344555555555555
No 96
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=67.16 E-value=1.8e+02 Score=32.38 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 006756 295 YAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNK 342 (632)
Q Consensus 295 ~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k 342 (632)
+.|...|.++---++.+.. +|..++...+..|.+|.+.|+.
T Consensus 226 ~~~~~~I~~~~~~~~~~L~-------kl~~~i~~~lekI~sREk~iN~ 266 (359)
T PF10498_consen 226 KQHKKSIESALPETKSQLD-------KLQQDISKTLEKIESREKYINN 266 (359)
T ss_pred HHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544 4677777788888888888884
No 97
>PRK03918 chromosome segregation protein; Provisional
Probab=65.95 E-value=3e+02 Score=33.16 Aligned_cols=6 Identities=17% Similarity=0.778 Sum_probs=2.8
Q ss_pred HhhcCC
Q 006756 515 CKNKFP 520 (632)
Q Consensus 515 c~~k~~ 520 (632)
|++...
T Consensus 441 c~~~L~ 446 (880)
T PRK03918 441 CGRELT 446 (880)
T ss_pred CCCcCC
Confidence 444443
No 98
>PRK00106 hypothetical protein; Provisional
Probab=65.48 E-value=2.8e+02 Score=32.57 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=27.7
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh----hhhhHHHhhhh
Q 006756 370 LASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQK----LEMEIEDLKGK 423 (632)
Q Consensus 370 lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~----LELEi~qLkG~ 423 (632)
.|.+-+..|.+.+++-+++.-+.--+.+-+-.+-|-+..+.++ +-.-||+.-+-
T Consensus 162 ~a~lt~~eak~~l~~~~~~~~~~~~~~~i~~~e~~a~~~a~~~a~~ii~~aiqr~a~~ 219 (535)
T PRK00106 162 VAALSQAEAREIILAETENKLTHEIATRIREAEREVKDRSDKMAKDLLAQAMQRLAGE 219 (535)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3555555677778887777644333332222222333344443 56666666543
No 99
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=65.06 E-value=1.7e+02 Score=30.06 Aligned_cols=46 Identities=17% Similarity=0.303 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHH
Q 006756 437 AVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARR 482 (632)
Q Consensus 437 ~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk 482 (632)
.+..+|..|...|.+-+...+..+.-++.|-..--.-.++|...+.
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888887777777777777776554444555554443
No 100
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=65.02 E-value=1.1e+02 Score=32.97 Aligned_cols=100 Identities=22% Similarity=0.306 Sum_probs=55.5
Q ss_pred hHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCC
Q 006756 354 LDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDE 433 (632)
Q Consensus 354 L~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~ 433 (632)
|..|+++.--+..+|..|-..|+...++...-.---|||..-+..---.||+ .+|+|.-+++-=.+++.++.--
T Consensus 30 LkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek---~rqKlshdlq~Ke~qv~~lEgQ--- 103 (307)
T PF10481_consen 30 LKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEK---TRQKLSHDLQVKESQVNFLEGQ--- 103 (307)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH---HHHHhhHHHhhhHHHHHHHHHH---
Confidence 4444444444455555555555555555444444445666655555555554 3555555554433444333221
Q ss_pred CcHHHHHHHHHHHHHHHhHHhhHHHHH
Q 006756 434 DDAAVQKKMKEMNDELESKIDDLDEME 460 (632)
Q Consensus 434 ~d~~~~~k~~~l~~~l~ek~~el~~~e 460 (632)
-...|+.|+.|+.+|.-...+|+...
T Consensus 104 -l~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 104 -LNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12456788899999988888887544
No 101
>PRK12704 phosphodiesterase; Provisional
Probab=64.56 E-value=2.8e+02 Score=32.27 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=28.3
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh----hhhhHHHhhhhH
Q 006756 370 LASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQK----LEMEIEDLKGKL 424 (632)
Q Consensus 370 lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~----LELEi~qLkG~L 424 (632)
.|.+-+..|.+-+++-+++.-+.--..+-+-.+-|.+..+.++ |-.-||+.-+-.
T Consensus 147 ~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~a~qr~a~~~ 205 (520)
T PRK12704 147 ISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKEILAQAIQRCAADH 205 (520)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 4555556677888887777644332222222222333333333 556666665433
No 102
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=64.55 E-value=1.7e+02 Score=35.68 Aligned_cols=50 Identities=24% Similarity=0.347 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHh
Q 006756 311 NVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQ 360 (632)
Q Consensus 311 ~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~k 360 (632)
.+.+++.+-+..+.+++.++.+++....++++....-+.+..+|++++++
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 561 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERN 561 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666666666666666666666666666655443
No 103
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=64.22 E-value=1.8e+02 Score=30.01 Aligned_cols=153 Identities=14% Similarity=0.233 Sum_probs=79.9
Q ss_pred HHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH-HHhhhHHHHH
Q 006756 274 CKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNK-REALTERERQ 352 (632)
Q Consensus 274 ~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k-~~a~~~~er~ 352 (632)
.+......+++.+...-..|+....+|.....+.-......+..+-..|...++..+..-..|...|-+ +.-.--.-..
T Consensus 85 ~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~ 164 (247)
T PF06705_consen 85 EKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQE 164 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556666777777777776666665556666666777777777666655544444432 1111111222
Q ss_pred hhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCC
Q 006756 353 KLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGD 432 (632)
Q Consensus 353 kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~ 432 (632)
+++.|+..-....+.| ...+-.+.....+.-+.+++.+++ ||..|++-|.+...--.
T Consensus 165 ~i~~Ek~~Re~~~~~l----------~~~le~~~~~~~~~~e~f~~~v~~-------------Ei~~lk~~l~~e~~~R~ 221 (247)
T PF06705_consen 165 KIEKEKNTRESKLSEL----------RSELEEVKRRREKGDEQFQNFVLE-------------EIAALKNALALESQERE 221 (247)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Confidence 3333322111111111 111222333334555566666665 77778888777777655
Q ss_pred CCcHHHHHHHHHHHHHH
Q 006756 433 EDDAAVQKKMKEMNDEL 449 (632)
Q Consensus 433 ~~d~~~~~k~~~l~~~l 449 (632)
+.|.+|..-|......|
T Consensus 222 ~~Dd~Iv~aln~yt~~l 238 (247)
T PF06705_consen 222 QSDDDIVQALNHYTKAL 238 (247)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 55556665555544444
No 104
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=64.04 E-value=2.4e+02 Score=33.24 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHH--HHHHHHhhhHHHHHhhHHHHH
Q 006756 311 NVRRILEEQEKLSCELETKKKKLDSWSK--QLNKREALTERERQKLDADRQ 359 (632)
Q Consensus 311 ~~~rI~~e~ekl~~eLe~k~~eld~r~k--~L~k~~a~~~~er~kL~~Ek~ 359 (632)
+++.|..+++.+. .....+++..+++ -=.++.++-+..|+|.+.+++
T Consensus 198 el~~i~~~~q~~e--qi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~ 246 (591)
T KOG2412|consen 198 ELQAIQREKQRKE--QIRERKERSEEKREEAERKRRAHQEELRQKEDEEAE 246 (591)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7788887776433 3333333333222 222444455555665554444
No 105
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.03 E-value=3.7e+02 Score=33.18 Aligned_cols=14 Identities=36% Similarity=0.781 Sum_probs=7.9
Q ss_pred hhhhhHHHhhhhHH
Q 006756 412 KLEMEIEDLKGKLE 425 (632)
Q Consensus 412 ~LELEi~qLkG~L~ 425 (632)
.|.--++||.|+|+
T Consensus 448 tLn~k~qqls~kl~ 461 (1118)
T KOG1029|consen 448 TLNFKLQQLSGKLQ 461 (1118)
T ss_pred HHHHHHHHHhhhhh
Confidence 35555566666655
No 106
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.73 E-value=2e+02 Score=30.12 Aligned_cols=142 Identities=23% Similarity=0.327 Sum_probs=82.4
Q ss_pred HHhHHHhhhhhHHHHHHHhhhhhHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhhHH
Q 006756 258 LASKIDMKNEDLSELQCKFNETTMSLSRML--EEKDRLHYAFVEETRKMQRLARDNVRRILEEQE-KLSCELETKKKKLD 334 (632)
Q Consensus 258 L~n~I~~knk~l~elE~k~ne~t~sL~r~m--eEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~e-kl~~eLe~k~~eld 334 (632)
|-..|+..-+.+.+-=..|+.+..++...- .+|+++-.--..||+|+|+ .|+.+.--+..++ |=+..|..-++-++
T Consensus 6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR-~RdQIK~W~~~~diKdk~~L~e~Rk~IE 84 (233)
T PF04065_consen 6 LQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQR-LRDQIKTWLSSNDIKDKKKLLENRKLIE 84 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHH-HHHHHHHHccCcccccHHHHHHHHHHHH
Confidence 345566666666666666777666666533 4688999999999999997 6777665554332 12223444445555
Q ss_pred HHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 006756 335 SWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLAS--MEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQK 412 (632)
Q Consensus 335 ~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~--~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~ 412 (632)
.+.+.+- -++.+.+-.+--+..|..|+ -.+.++..++.. =+-+-|-+|..|.+ .
T Consensus 85 ~~MErFK-----------~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~~----------wl~~~Id~L~~QiE---~ 140 (233)
T PF04065_consen 85 EQMERFK-----------VVEKESKTKAFSKEGLMAASKLDPKEKEKEEARD----------WLKDSIDELNRQIE---Q 140 (233)
T ss_pred HHHHHHH-----------HHHHHhcccccchhhhhcccccCcchHHHHHHHH----------HHHHHHHHHHHHHH---H
Confidence 4444443 23444444444456666544 011111111111 14557788888876 6
Q ss_pred hhhhHHHhhhhH
Q 006756 413 LEMEIEDLKGKL 424 (632)
Q Consensus 413 LELEi~qLkG~L 424 (632)
+|.|++.|.++.
T Consensus 141 ~E~E~E~L~~~~ 152 (233)
T PF04065_consen 141 LEAEIESLSSQK 152 (233)
T ss_pred HHHHHHHHHHhh
Confidence 888998887653
No 107
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=62.34 E-value=12 Score=37.19 Aligned_cols=28 Identities=36% Similarity=0.546 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhHHhhhhhhHHHhhh
Q 006756 395 EALSKILQLEKQLDAKQKLEMEIEDLKG 422 (632)
Q Consensus 395 ~~~~kil~LekqL~~kQ~LELEi~qLkG 422 (632)
.+..+..-||-+||+|..|.-++|+||.
T Consensus 11 ~AIERnalLE~ELdEKE~L~~~~QRLkD 38 (166)
T PF04880_consen 11 QAIERNALLESELDEKENLREEVQRLKD 38 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCH-----
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556688889999999999998874
No 108
>PHA02562 46 endonuclease subunit; Provisional
Probab=62.20 E-value=2.8e+02 Score=31.48 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=11.6
Q ss_pred HHhhhhHHHHHHHHHhHHHhhhhhHH
Q 006756 245 QEDAQSKIHVVAHLASKIDMKNEDLS 270 (632)
Q Consensus 245 ~E~~rk~~~lv~~L~n~I~~knk~l~ 270 (632)
.+..+...+.+..|..+|...+..+.
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 109
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.80 E-value=3e+02 Score=31.73 Aligned_cols=22 Identities=9% Similarity=0.068 Sum_probs=14.0
Q ss_pred ecCCCCCCCchhhhhhhccCCC
Q 006756 217 RADDNTSEGPIGEYLRQEGKLR 238 (632)
Q Consensus 217 radDy~~~g~iG~~LrK~gdLK 238 (632)
|-+||-+.+-|-+...+..|=|
T Consensus 278 rVWDYAGDnYVhRl~~~~~dGk 299 (493)
T KOG0804|consen 278 RVWDYAGDNYVHRLPQSKTDGK 299 (493)
T ss_pred eeeecccchhhhhccccCCCCc
Confidence 5678877776666666654444
No 110
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=61.55 E-value=3.1e+02 Score=31.83 Aligned_cols=55 Identities=27% Similarity=0.368 Sum_probs=28.0
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh----hhhhHHHhhhhH
Q 006756 370 LASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQK----LEMEIEDLKGKL 424 (632)
Q Consensus 370 lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~----LELEi~qLkG~L 424 (632)
.|.+-+..|.+.+++-+++.-+.--+..-+-.+-|.+..+.++ |-.-||+.-+-.
T Consensus 141 ~a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~aiqr~a~~~ 199 (514)
T TIGR03319 141 ISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKEILATAIQRYAGDH 199 (514)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 3555555677788888777654332222222222333333333 666677665443
No 111
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=60.91 E-value=4e+02 Score=32.88 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=5.8
Q ss_pred ceeeeeeecC
Q 006756 210 RIYGWFARAD 219 (632)
Q Consensus 210 ~LYGWvArad 219 (632)
.+-||++|.-
T Consensus 822 ~~Rg~L~rkr 831 (1259)
T KOG0163|consen 822 IARGYLARKR 831 (1259)
T ss_pred HHHHHHHHhh
Confidence 3457777653
No 112
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=60.86 E-value=2.8 Score=49.61 Aligned_cols=66 Identities=23% Similarity=0.398 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHH
Q 006756 397 LSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKT 465 (632)
Q Consensus 397 ~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~ 465 (632)
.....+|++++..-+++..+++.++..|+-+. .+-+..+..+|++|...|..+..+|..+++....
T Consensus 536 ~~lk~~le~~~~~l~e~~~e~~~~~~~le~l~---~~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~k~ 601 (713)
T PF05622_consen 536 SELKQKLEEHLEKLRELKDELQKKREQLEELE---QELNQSLSQKIEELEEALQKKEEEMRAMEERYKK 601 (713)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHhHHHHHhHHHHHHH
Confidence 33334555555555555555555554444322 1223344678999999999999999888764433
No 113
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.79 E-value=57 Score=31.67 Aligned_cols=78 Identities=21% Similarity=0.410 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhcc
Q 006756 395 EALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSN 474 (632)
Q Consensus 395 ~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sn 474 (632)
++-..|.+|..||. .|.-++..|+..|..+...+. .+++...|..|..++...++.|+.+.+ +...| +.
T Consensus 76 ~ld~ei~~L~~el~---~l~~~~k~l~~eL~~L~~~~t--~~el~~~i~~l~~e~~~l~~kL~~l~~-~~~~v-----s~ 144 (169)
T PF07106_consen 76 ELDAEIKELREELA---ELKKEVKSLEAELASLSSEPT--NEELREEIEELEEEIEELEEKLEKLRS-GSKPV-----SP 144 (169)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC-----CH
Confidence 34445677776664 577888889999999988876 567889999999999999999988777 44442 34
Q ss_pred HHHHHHHHH
Q 006756 475 DELQEARRE 483 (632)
Q Consensus 475 dELq~aRk~ 483 (632)
+|.+.+.+.
T Consensus 145 ee~~~~~~~ 153 (169)
T PF07106_consen 145 EEKEKLEKE 153 (169)
T ss_pred HHHHHHHHH
Confidence 455544443
No 114
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=60.24 E-value=1.9e+02 Score=29.03 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=41.2
Q ss_pred HHhhhhhhHHHhhhhHHHHhhcCCC--CcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHH
Q 006756 409 AKQKLEMEIEDLKGKLEVMKHLGDE--DDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIA 468 (632)
Q Consensus 409 ~kQ~LELEi~qLkG~L~VmKh~~~~--~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ 468 (632)
..+.++.+|..|+..|+..+--..+ +-.....++.+|..++.....+|+.....+...|-
T Consensus 77 ~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~ 138 (188)
T PF03962_consen 77 EIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIE 138 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3456777888888888888654332 23455567788888888888888766666666663
No 115
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=60.09 E-value=4.1e+02 Score=32.72 Aligned_cols=32 Identities=44% Similarity=0.683 Sum_probs=18.7
Q ss_pred HHHHHHHhhHHhhhhhhHHHhhhhHH-HHhhcC
Q 006756 400 ILQLEKQLDAKQKLEMEIEDLKGKLE-VMKHLG 431 (632)
Q Consensus 400 il~LekqL~~kQ~LELEi~qLkG~L~-VmKh~~ 431 (632)
+.+++..++.-+.++-++++++.+|+ +-+.++
T Consensus 680 ~~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~ 712 (908)
T COG0419 680 EEQLEEKLEELEQLEEELEQLREELEELLKKLG 712 (908)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666666666777777777763 344443
No 116
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.73 E-value=3.9e+02 Score=32.40 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=35.1
Q ss_pred hhHHHHHHHhhhhhHHHHhHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHhhH
Q 006756 267 EDLSELQCKFNETTMSLSRMLEEKDRL---HYAFVEETRKMQRLA---RDNVRRILEEQEKLSCELETKKKKL 333 (632)
Q Consensus 267 k~l~elE~k~ne~t~sL~r~meEk~~l---h~~yneE~~kmQ~~a---r~~~~rI~~e~ekl~~eLe~k~~el 333 (632)
+|+...+--..+....+.....++++. +....+++..++..| .+-+.+|.+-+++|..-++.-++.+
T Consensus 551 eYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 551 EYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566655555555555532 344455566665555 3445555555555555555444444
No 117
>PRK09039 hypothetical protein; Validated
Probab=59.50 E-value=2.7e+02 Score=30.50 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=31.8
Q ss_pred HHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHH
Q 006756 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFV 298 (632)
Q Consensus 252 ~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yn 298 (632)
+..|+.|...+...+.....++.........|+-...++..|...|.
T Consensus 59 ~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 59 NSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455677777777777777777777777777766666666655555
No 118
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=58.95 E-value=2.1e+02 Score=34.92 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=32.7
Q ss_pred HHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 245 QEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEE 318 (632)
Q Consensus 245 ~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e 318 (632)
.++....+.++..|..+...-.+...+++....+.....+++.++.+++-+.. +++.+.|++.+++++.+
T Consensus 512 ~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~a~~~l~~ 581 (782)
T PRK00409 512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEE----DKLLEEAEKEAQQAIKE 581 (782)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34444566666666655555555555554444444444444333333333333 33333444444444433
No 119
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.39 E-value=3.4e+02 Score=31.33 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhHHHHH-----HHhhHHHHHHHHHHHHhhhHHHHHhhHHH
Q 006756 311 NVRRILEEQEKLSCELET-----KKKKLDSWSKQLNKREALTERERQKLDAD 357 (632)
Q Consensus 311 ~~~rI~~e~ekl~~eLe~-----k~~eld~r~k~L~k~~a~~~~er~kL~~E 357 (632)
.+++-.+.+.+|+++|+. .|..+..|.+++..-...-+.|-.|...|
T Consensus 360 ei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~e 411 (521)
T KOG1937|consen 360 EIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEE 411 (521)
T ss_pred HHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344445889999999986 37788899999987666555555555444
No 120
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=57.88 E-value=3.4 Score=48.97 Aligned_cols=93 Identities=22% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCC------cHHHHHHHHH-------HHHHHHhHHhhHH
Q 006756 391 VEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDED------DAAVQKKMKE-------MNDELESKIDDLD 457 (632)
Q Consensus 391 rEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~------d~~~~~k~~~-------l~~~l~ek~~el~ 457 (632)
-|+..+-.|+..+|.-..+=..|++++++|...+.-...+..+. .+++...+.. |.+++.....++.
T Consensus 288 Ee~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~ 367 (722)
T PF05557_consen 288 EEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELR 367 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 46667778888888777777889999999999999888774442 2455555544 3445555556666
Q ss_pred HHHHhhHHHHHHHhhccHHHHHHHHH
Q 006756 458 EMESLNKTLIAKERQSNDELQEARRE 483 (632)
Q Consensus 458 ~~e~~nq~L~~ker~sndELq~aRk~ 483 (632)
.++..|+.|-..-....+++++++..
T Consensus 368 ~l~~~~~~Le~e~~~l~~~~~~l~~~ 393 (722)
T PF05557_consen 368 ELEEEIQELEQEKEQLLKEIEELEAS 393 (722)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677776665444444555555443
No 121
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=57.51 E-value=3.6e+02 Score=31.22 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhh
Q 006756 392 EKEEALSKILQLEKQLDAKQKLE 414 (632)
Q Consensus 392 Eke~~~~kil~LekqL~~kQ~LE 414 (632)
.-+++..+|-.||+-++.....+
T Consensus 379 ~l~~~~~~~~~le~~~~~~~~~~ 401 (582)
T PF09731_consen 379 KLAELNSRLKALEEALDARSEAE 401 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555444333
No 122
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=56.82 E-value=2.2e+02 Score=28.59 Aligned_cols=161 Identities=17% Similarity=0.282 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhH
Q 006756 290 KDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQ 369 (632)
Q Consensus 290 k~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~ 369 (632)
-..++..|-.+|..--..++..+.+++.....+..+++.-..++..|..+...--...+.+-.+.--..
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~----------- 92 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQR----------- 92 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-----------
Confidence 335555555666655566666666666666666666666555555555554422111111100000000
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-hh---hhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHH
Q 006756 370 LASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAK-QK---LEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEM 445 (632)
Q Consensus 370 lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~k-Q~---LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l 445 (632)
.+..+. .-+.+...++.+...-+.+...|.+|+.+|..- ++ |-.--..-+-+..|-..+.+-+-.+....++.+
T Consensus 93 k~~~e~--~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~ 170 (221)
T PF04012_consen 93 KADLEE--QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERM 170 (221)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 000010 111222233444444444555555555544321 11 111222223334444555554445556667777
Q ss_pred HHHHHhHHhhHHHHHHhh
Q 006756 446 NDELESKIDDLDEMESLN 463 (632)
Q Consensus 446 ~~~l~ek~~el~~~e~~n 463 (632)
.+.+.+.+...+.+..+.
T Consensus 171 e~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 171 EEKIEEMEARAEASAELA 188 (221)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 777766666666555555
No 123
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.65 E-value=4.4e+02 Score=32.01 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=13.2
Q ss_pred HHhhHHHHHHHHHHHHhhhHHHHHhhH
Q 006756 329 KKKKLDSWSKQLNKREALTERERQKLD 355 (632)
Q Consensus 329 k~~eld~r~k~L~k~~a~~~~er~kL~ 355 (632)
.++||+.=..+|..+++.-+.-+++++
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555554
No 124
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.27 E-value=4.1e+02 Score=31.50 Aligned_cols=89 Identities=24% Similarity=0.270 Sum_probs=53.8
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH---HH---HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Q 006756 253 HVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE---KD---RLHYAFVEETRKM---QRLARDNVRRILEEQEKLS 323 (632)
Q Consensus 253 ~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE---k~---~lh~~yneE~~km---Q~~ar~~~~rI~~e~ekl~ 323 (632)
+.-+.|.+-+.+-.-++.+|+.+.-...-.|.++=+| ++ +.+++-+.++++. |..+-..+.++..|.++|.
T Consensus 266 e~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~ 345 (581)
T KOG0995|consen 266 EKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLK 345 (581)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3444455555555555666666555555555544433 22 3344555555543 4556677888888888888
Q ss_pred HHHHHHHhhHHHHHHHHH
Q 006756 324 CELETKKKKLDSWSKQLN 341 (632)
Q Consensus 324 ~eLe~k~~eld~r~k~L~ 341 (632)
.+|..-..++|...+.+=
T Consensus 346 r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 346 RELNKIQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888877777777666554
No 125
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=56.26 E-value=5.2e+02 Score=32.76 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=17.9
Q ss_pred CCceeeeeeecCCCCCCCchhhhhhhccCCCCHHHH
Q 006756 208 GLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDI 243 (632)
Q Consensus 208 ~~~LYGWvAradDy~~~g~iG~~LrK~gdLKTi~ei 243 (632)
..+|-|+-|+.+-..-..-|=.+-.+-.+|.+--++
T Consensus 284 eeQLq~lrarse~~tleseiiqlkqkl~dm~~erdt 319 (1195)
T KOG4643|consen 284 EEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDT 319 (1195)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhh
Confidence 347777777776633222233333344455444443
No 126
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=56.22 E-value=5.2e+02 Score=32.70 Aligned_cols=93 Identities=15% Similarity=0.221 Sum_probs=57.0
Q ss_pred eCCChhchhhHHHHHhhhhhcCCChhhhhhhcCCCCCceeeeeeecCCCCCCCchhhhhhhccCCCCHHHHHHHhhhhHH
Q 006756 173 FNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKI 252 (632)
Q Consensus 173 F~~dw~Gf~nA~~lek~Fe~~~~GRkdW~~~~~~~~~~LYGWvAradDy~~~g~iG~~LrK~gdLKTi~ei~~E~~rk~~ 252 (632)
|+.+..-=.+-..|-.+|..| -+.|.-|++. +-|++| ..|.+|+=++..+.--..
T Consensus 119 iN~~a~t~s~i~elv~~fNIQ--------------i~NLCqFLpQ-------DkV~EF----a~L~pi~LL~eTekAig~ 173 (1072)
T KOG0979|consen 119 INDSATTKSEIEELVAHFNIQ--------------IDNLCQFLPQ-------DKVKEF----ARLSPIELLVETEKAIGA 173 (1072)
T ss_pred eccchhhhHHHHHHHHHHhcc--------------cCchhhhccH-------HHHHHH----HcCChHHHHHHHHHhcCc
Confidence 344444445566677777754 1234444422 346666 567788877766654333
Q ss_pred -HHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHH
Q 006756 253 -HVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKD 291 (632)
Q Consensus 253 -~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~ 291 (632)
.|+.++ ..+.......+.||.+|+..+..|.++-.+.+
T Consensus 174 ~~ll~~h-~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~ 212 (1072)
T KOG0979|consen 174 EELLQYH-IELMDLREDEKSLEDKLTTKTEKLNRLEDEID 212 (1072)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444 35667777888888888888888887775543
No 127
>smart00030 CLb CLUSTERIN Beta chain.
Probab=55.44 E-value=52 Score=33.84 Aligned_cols=36 Identities=33% Similarity=0.428 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 006756 378 ADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQKL 413 (632)
Q Consensus 378 ade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~L 413 (632)
...++|+-+|+-|++||+|++...+.|++|.+.|.+
T Consensus 44 eh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~v 79 (206)
T smart00030 44 ERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGV 79 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999999888765
No 128
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=55.14 E-value=4.3e+02 Score=31.42 Aligned_cols=214 Identities=19% Similarity=0.262 Sum_probs=97.5
Q ss_pred hHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006756 250 SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAF--VEETRKMQRLARDNVRRILEEQEKLSCELE 327 (632)
Q Consensus 250 k~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~y--neE~~kmQ~~ar~~~~rI~~e~ekl~~eLe 327 (632)
+..+-+..|..+|+.-...+.+++........++..+.++...+...- .++--++...+.+-...--..-.||..-+
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v- 403 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALV- 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-
Confidence 445556666666666666666666666666666666666544332211 11111222222221111011113333333
Q ss_pred HHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006756 328 TKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQL 407 (632)
Q Consensus 328 ~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL 407 (632)
++.+..|..++.+=+.-|.-|.++.+......+....-+. +. -.+-+.+..+|.+++.++
T Consensus 404 ------~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~----------~~----~~~ik~~r~~~k~~~~e~ 463 (594)
T PF05667_consen 404 ------EASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESK----------QK----LQEIKELREEIKEIEEEI 463 (594)
T ss_pred ------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHH----------HH----HHHHHHHHHHHHHHHHHH
Confidence 3344445555566666666666665543221111111110 00 122233344444444444
Q ss_pred hHHhh----hhhhHHHhh----------hhHHHHhhcC--CCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHh
Q 006756 408 DAKQK----LEMEIEDLK----------GKLEVMKHLG--DEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKER 471 (632)
Q Consensus 408 ~~kQ~----LELEi~qLk----------G~L~VmKh~~--~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker 471 (632)
..|.. |+-+.+.|. .-|++.|-+. .+|-..|..-+..|+.++..-.+-|+.--...-.||-+.=
T Consensus 464 ~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdA 543 (594)
T PF05667_consen 464 RQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDA 543 (594)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 43332 333344433 2344444431 1222333333456666666666666666666666777776
Q ss_pred hccHHHHHHHHHH
Q 006756 472 QSNDELQEARREL 484 (632)
Q Consensus 472 ~sndELq~aRk~l 484 (632)
+.++--+.|=|-|
T Consensus 544 KkDe~~rkaYK~L 556 (594)
T PF05667_consen 544 KKDEAARKAYKLL 556 (594)
T ss_pred hcCHHHHHHHHHH
Confidence 6555444444433
No 129
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=54.82 E-value=20 Score=37.73 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=37.6
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhch
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGF 180 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw~Gf 180 (632)
.++|-|+|... +...|++ |+.|.++ .|+.++++ ....|+++|.|.+--.-.
T Consensus 271 ~lfV~NL~~~~--------~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 271 CIFVYNLSPDT--------DETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred EEEEeCCCCCC--------CHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHH
Confidence 37789998643 5677899 9999976 56666654 457899999998755443
No 130
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=53.94 E-value=4.1e+02 Score=30.88 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=15.4
Q ss_pred HHHhhhhhcCCChhhhhhhcC
Q 006756 185 DFEKAFDADHQGKRHWIARKE 205 (632)
Q Consensus 185 ~lek~Fe~~~~GRkdW~~~~~ 205 (632)
.|-..|.+-++|-.++...+.
T Consensus 108 ~fit~YNAv~R~~~~~~~~~Y 128 (489)
T PF05262_consen 108 TFITIYNAVYRGDLDYFKKKY 128 (489)
T ss_pred HHHHHHHHHHcCCHHHHHHHh
Confidence 355678888888888877653
No 131
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=53.70 E-value=4.9e+02 Score=31.72 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=20.2
Q ss_pred HHHHhhhhHHHHHHHHHhHHHhhhhhHHHHH
Q 006756 243 IVQEDAQSKIHVVAHLASKIDMKNEDLSELQ 273 (632)
Q Consensus 243 i~~E~~rk~~~lv~~L~n~I~~knk~l~elE 273 (632)
.++-..-|+.+.|.-|.+.|+.-...|..+|
T Consensus 343 ~~q~eLdK~~~~i~~Ln~~leaReaqll~~e 373 (961)
T KOG4673|consen 343 DVQLELDKTKKEIKMLNNALEAREAQLLADE 373 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666777777777777666665554
No 132
>PRK09343 prefoldin subunit beta; Provisional
Probab=53.16 E-value=2e+02 Score=26.93 Aligned_cols=80 Identities=25% Similarity=0.442 Sum_probs=49.1
Q ss_pred hhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHH---------HHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHH
Q 006756 407 LDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKM---------KEMNDELESKIDDLDEMESLNKTLIAKERQSNDEL 477 (632)
Q Consensus 407 L~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~---------~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndEL 477 (632)
..++|.|+.++.+++..+.=+.-++ +|..+++-+ +++..+|.++.+-+ +.--.+|-.++..-...+
T Consensus 27 ~~q~~~le~q~~e~~~~~~EL~~L~--~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i---e~~ik~lekq~~~l~~~l 101 (121)
T PRK09343 27 LQQKSQIDLELREINKALEELEKLP--DDTPIYKIVGNLLVKVDKTKVEKELKERKELL---ELRSRTLEKQEKKLREKL 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC--CcchhHHHhhHHHhhccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3467888888888888887777776 456666543 45555554443333 355555655555555666
Q ss_pred HHHHHHHHHhhhhc
Q 006756 478 QEARRELIQGLSDL 491 (632)
Q Consensus 478 q~aRk~lI~~l~~~ 491 (632)
.+.+..|-.-+...
T Consensus 102 ~e~q~~l~~ll~~~ 115 (121)
T PRK09343 102 KELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666665555543
No 133
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=53.13 E-value=6e+02 Score=32.52 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=24.0
Q ss_pred cCccccccCcccHHHHHHHHhhHHHHHHHHHHHHHhhhhcCCC
Q 006756 553 EGTPKEIIDEEDEKIKSLKELGDEIYMAVTTALKELNEYNPSG 595 (632)
Q Consensus 553 ~g~~keii~edD~kL~~Lke~Geev~~aV~~Al~E~neyN~sg 595 (632)
.|...+.+..-.+.+..+...-+.+..+|-..-.-|+.|+.|+
T Consensus 894 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~l~~~~~~~ 936 (1201)
T PF12128_consen 894 EGSVDERLRDLEDLLQRRKRLREELKKAVERFKGVLTKHSGSE 936 (1201)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444455555555555555555556666665555555665544
No 134
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=53.00 E-value=5.2e+02 Score=31.81 Aligned_cols=93 Identities=26% Similarity=0.390 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhh
Q 006756 377 KADENVLRLVEEQKVEKEEALSKILQLEKQL-DAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDD 455 (632)
Q Consensus 377 kade~vlkLve~hkrEke~~~~kil~LekqL-~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~e 455 (632)
..+|+++|.+|.|+.|...+.+-|.+-+++| ..||.-++|+.++|--++ +..-+|+.++=+
T Consensus 455 ~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~-----------eal~~~k~~q~k------- 516 (861)
T PF15254_consen 455 SKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVE-----------EALVNVKSLQFK------- 516 (861)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhh-------
Confidence 4678999999999999999999999888875 678888999888764332 222233333333
Q ss_pred HHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhh
Q 006756 456 LDEMESLNKTLIAKERQSNDELQEARRELIQGL 488 (632)
Q Consensus 456 l~~~e~~nq~L~~ker~sndELq~aRk~lI~~l 488 (632)
|+.-|.-|+.|-+--|+-..|+...| +|+.+|
T Consensus 517 Le~sekEN~iL~itlrQrDaEi~RL~-eLtR~L 548 (861)
T PF15254_consen 517 LEASEKENQILGITLRQRDAEIERLR-ELTRTL 548 (861)
T ss_pred HHHHHhhhhHhhhHHHHHHHHHHHHH-HHHHHH
Confidence 34445567777777777666665443 455554
No 135
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=52.59 E-value=2.7e+02 Score=28.39 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHH
Q 006756 311 NVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQK 390 (632)
Q Consensus 311 ~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hk 390 (632)
+..++..........|+.-++..+..|.+++....++..- -..+.+|+ ...+.-|..+..+++.+....|+...
T Consensus 108 ~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~---~~ke~eK~---~~k~~k~~~~~~~~~~~Y~~~v~~~~ 181 (236)
T cd07651 108 HMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLT---WGKELEKN---NAKLNKAQSSINSSRRDYQNAVKALR 181 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccc---CcchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556667777778888888888655542210 00111221 12344566666677888888888776
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhh-hHHHhhhhHH
Q 006756 391 VEKEEALSKILQLEKQLDAKQKLEM-EIEDLKGKLE 425 (632)
Q Consensus 391 rEke~~~~kil~LekqL~~kQ~LEL-Ei~qLkG~L~ 425 (632)
.=+......+ ..-++.=|.||- -|+.|+..|.
T Consensus 182 ~~~~~~~~~~---~~~~~~~Q~lEe~Ri~~lk~~l~ 214 (236)
T cd07651 182 ELNEIWNREW---KAALDDFQDLEEERIQFLKSNCW 214 (236)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444333322 223344444443 3555665444
No 136
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=52.52 E-value=2.7e+02 Score=28.31 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=8.5
Q ss_pred HHHHHHhHHHhhhhhHHHHHHH
Q 006756 254 VVAHLASKIDMKNEDLSELQCK 275 (632)
Q Consensus 254 lv~~L~n~I~~knk~l~elE~k 275 (632)
+++...+.|..-...+..+...
T Consensus 62 ll~~h~eEvr~Lr~~LR~~q~~ 83 (194)
T PF15619_consen 62 LLQRHNEEVRVLRERLRKSQEQ 83 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334443333333333333
No 137
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=52.50 E-value=2.6e+02 Score=28.10 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=5.6
Q ss_pred cHHHHHHH-Hhh
Q 006756 564 DEKIKSLK-ELG 574 (632)
Q Consensus 564 D~kL~~Lk-e~G 574 (632)
|.-|-.|| +.|
T Consensus 209 ~~~La~LK~~~~ 220 (221)
T PF04012_consen 209 EDELAALKAKQG 220 (221)
T ss_pred HHHHHHHHhHcc
Confidence 45555555 443
No 138
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=52.23 E-value=8.8 Score=24.34 Aligned_cols=20 Identities=30% Similarity=0.692 Sum_probs=12.3
Q ss_pred eeccCCCCCCcCccCchhHHhhh
Q 006756 40 LRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 40 ~~CP~C~gkkK~dy~~~~LLqHA 62 (632)
|.||.|+-. .-...+|.+|-
T Consensus 1 ~~C~~C~~~---~~~~~~l~~H~ 20 (24)
T PF13894_consen 1 FQCPICGKS---FRSKSELRQHM 20 (24)
T ss_dssp EE-SSTS-E---ESSHHHHHHHH
T ss_pred CCCcCCCCc---CCcHHHHHHHH
Confidence 789999733 33566677774
No 139
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=51.37 E-value=5.7e+02 Score=31.79 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=13.9
Q ss_pred HHHhhHHHHHHHHHHHHhhhHHHHHhhHH
Q 006756 328 TKKKKLDSWSKQLNKREALTERERQKLDA 356 (632)
Q Consensus 328 ~k~~eld~r~k~L~k~~a~~~~er~kL~~ 356 (632)
++--+|.....|+...-+.+..+.+.|+.
T Consensus 173 nk~~~lt~~~~q~~tkl~e~~~en~~le~ 201 (1265)
T KOG0976|consen 173 DKNEELNEFNMEFQTKLAEANREKKALEE 201 (1265)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555544443
No 140
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=51.36 E-value=3.6e+02 Score=29.48 Aligned_cols=108 Identities=17% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH------------------HHHHHHHHHHH-----
Q 006756 244 VQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE------------------KDRLHYAFVEE----- 300 (632)
Q Consensus 244 ~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE------------------k~~lh~~yneE----- 300 (632)
+.+..|+..-++..+-.-+.-+.-.+++||.+|.-.-.++.+-|.. +-+|-.+|++.
T Consensus 170 trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek 249 (305)
T PF14915_consen 170 TRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEK 249 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHH
Q 006756 301 -TRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERER 351 (632)
Q Consensus 301 -~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er 351 (632)
+.++|..+.+-+.++-.+.+|-..-|+.+-++|-..|..|-++.-+=+.|+
T Consensus 250 ~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkEK 301 (305)
T PF14915_consen 250 TVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKEK 301 (305)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
No 141
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=51.16 E-value=4.1e+02 Score=30.09 Aligned_cols=107 Identities=20% Similarity=0.182 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006756 249 QSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELET 328 (632)
Q Consensus 249 rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~ 328 (632)
-|-..+...|.--|+..-+.-.+|+-..-+...+|+-.-|.+++-...-..---+.|--.-+..+..++|.-.||.+-++
T Consensus 281 tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~ 360 (442)
T PF06637_consen 281 TKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDS 360 (442)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666777777777777778888888888888888888887755555555588888888899999999999999999
Q ss_pred HHhhHHHHHHHHHHHHhhhHHHHHhhH
Q 006756 329 KKKKLDSWSKQLNKREALTERERQKLD 355 (632)
Q Consensus 329 k~~eld~r~k~L~k~~a~~~~er~kL~ 355 (632)
-.++|+.+.++|+.+..+-+-.-.-|+
T Consensus 361 L~keLeekkreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 361 LAKELEEKKRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 999999999999977665554444444
No 142
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.80 E-value=2.9e+02 Score=32.98 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHh
Q 006756 385 LVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDL 420 (632)
Q Consensus 385 Lve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qL 420 (632)
.+++.+++.+.+.+++-++-..+..+-....||+++
T Consensus 444 ~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~ 479 (652)
T COG2433 444 ELEELKREIEKLESELERFRREVRDKVRKDREIRAR 479 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 444445555555555555555555555555555444
No 143
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.79 E-value=1.8e+02 Score=34.59 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhc
Q 006756 391 VEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 391 rEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~ 430 (632)
+|-+....+|-.|++.|..+- .+|++|+++|.-.+.|
T Consensus 474 rei~~~~~~I~~L~~~L~e~~---~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 474 REIRARDRRIERLEKELEEKK---KRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 566677888889999888763 5788888887766644
No 144
>PLN03120 nucleic acid binding protein; Provisional
Probab=50.77 E-value=24 Score=37.39 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=41.8
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHHHHhh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKA 189 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~lek~ 189 (632)
++.|-|++. ..+...|++ |+.|.+..-.-+..+..++|++.|.|.+. .+...|+.|...
T Consensus 6 tVfVgNLs~--------~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~-eaAe~AllLnG~ 65 (260)
T PLN03120 6 TVKVSNVSL--------KATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDP-QGAETALLLSGA 65 (260)
T ss_pred EEEEeCCCC--------CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcH-HHHHHHHHhcCC
Confidence 467888875 346788999 98887654444444445789999999654 777888866543
No 145
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=50.35 E-value=5.1e+02 Score=30.93 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=7.9
Q ss_pred HhhhhhHHHHhHHHHHHH
Q 006756 275 KFNETTMSLSRMLEEKDR 292 (632)
Q Consensus 275 k~ne~t~sL~r~meEk~~ 292 (632)
+..+++..+..+.++++.
T Consensus 30 r~~qmseev~~L~eEk~~ 47 (617)
T PF15070_consen 30 RMQQMSEEVRTLKEEKEH 47 (617)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 146
>PRK12704 phosphodiesterase; Provisional
Probab=49.03 E-value=4.9e+02 Score=30.31 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=19.5
Q ss_pred hhcCCCCcceEEEEecCccccccCcccHHHHHHHHhhHHH
Q 006756 538 NLKATEWHPFKIIHVEGTPKEIIDEEDEKIKSLKELGDEI 577 (632)
Q Consensus 538 ~l~~p~WhPFk~v~v~g~~keii~edD~kL~~Lke~Geev 577 (632)
-+.|--=|||++-.+=-+...-|+ +.+++.|+++
T Consensus 273 l~~dg~i~P~~iee~~~~~~~~~~------~~~~~~ge~~ 306 (520)
T PRK12704 273 LVQDGRIHPARIEEMVEKARKEVD------EEIREEGEQA 306 (520)
T ss_pred HHhcCCcCCCCHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 356888899987544322222222 3345788876
No 147
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=48.81 E-value=3.5e+02 Score=28.58 Aligned_cols=13 Identities=23% Similarity=0.156 Sum_probs=7.5
Q ss_pred HHhhHHHHhhcCC
Q 006756 530 TLCSLWQENLKAT 542 (632)
Q Consensus 530 ~lcs~Wq~~l~~p 542 (632)
+|.|..+..+++.
T Consensus 175 ell~~yeri~~~~ 187 (239)
T COG1579 175 ELLSEYERIRKNK 187 (239)
T ss_pred HHHHHHHHHHhcC
Confidence 4566666666543
No 148
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=48.79 E-value=2.9e+02 Score=29.97 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=19.1
Q ss_pred cccccccccCCCCChhhHHHHhhcCCchhHHHHHHHHhhHHHHhhcCCCCcceEEEEecC
Q 006756 495 RTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEG 554 (632)
Q Consensus 495 ~~~IgiKrmGeld~kpf~~ac~~k~~~~~~~~~a~~lcs~Wq~~l~~p~WhPFk~v~v~g 554 (632)
-+.|-==|+|-|...|--=. . -.-|-..++-|...=-..| +...+-|+.|-.|.
T Consensus 150 fGTINGlRLGrl~~~~V~W~--E---INAA~Gq~~LLL~~la~~l-~~~f~~y~l~P~Gs 203 (314)
T PF04111_consen 150 FGTINGLRLGRLPNVPVEWN--E---INAAWGQTALLLQTLAKKL-NFKFQRYRLVPMGS 203 (314)
T ss_dssp EEEETTEEE--BTTB---HH--H---HHHHHHHHHHHHHHHHHHC-T---SSEEEE--GG
T ss_pred eeeECCeeeccCCCCCCChH--H---HHHHHHHHHHHHHHHHHHh-CCCcccceeEecCC
Confidence 33344447887765542100 0 0122333444444444444 35565666665333
No 149
>PLN03121 nucleic acid binding protein; Provisional
Probab=48.29 E-value=30 Score=36.46 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=44.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHHHHhh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKA 189 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~lek~ 189 (632)
.|++.|-|++.. -+...|++ |+.|.++.-..+..+.+..|++.|.|.. -.+...|+.|...
T Consensus 5 g~TV~V~NLS~~--------tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d-~~aaetAllLnGa 66 (243)
T PLN03121 5 GYTAEVTNLSPK--------ATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKD-AYALETAVLLSGA 66 (243)
T ss_pred ceEEEEecCCCC--------CCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECC-HHHHHHHHhcCCC
Confidence 378999999653 36788999 9888886666666667777899999965 4445667665443
No 150
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=47.76 E-value=3.5e+02 Score=28.21 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 006756 288 EEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETK 329 (632)
Q Consensus 288 eEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k 329 (632)
++-.+|++.|-++|..-...++..+-+++-.+..+..+|+..
T Consensus 23 EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~ 64 (225)
T COG1842 23 EDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEA 64 (225)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688888888998888899999998888877666555443
No 151
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.41 E-value=2.7e+02 Score=26.48 Aligned_cols=99 Identities=22% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHH
Q 006756 296 AFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQ 375 (632)
Q Consensus 296 ~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ 375 (632)
.+.|.+..-....+-...+.-..+++|+.+++...+++..-......+..........+..+++. ++.+.-
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee---------~~klk~ 122 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEE---------LQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHH
Q 006756 376 KKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLE 425 (632)
Q Consensus 376 ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~ 425 (632)
.-++-...--+|-.++ |.||..|+.+|.
T Consensus 123 ~~~~~~tq~~~e~rkk----------------------e~E~~kLk~rL~ 150 (151)
T PF11559_consen 123 QLQQRKTQYEHELRKK----------------------EREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHH----------------------HHHHHHHHHHhc
No 152
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=46.19 E-value=3.7e+02 Score=28.11 Aligned_cols=66 Identities=24% Similarity=0.357 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 006756 294 HYAFVEETRKMQRLARDNVRRILEEQEKLS------CELETKKKKLDSWSKQLNKREALTERERQKLDADRQ 359 (632)
Q Consensus 294 h~~yneE~~kmQ~~ar~~~~rI~~e~ekl~------~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~ 359 (632)
+..|.++++..+..-.+...+|-.=.++++ ..|+.+..+++.-...|......+..+|..|+.+..
T Consensus 14 L~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~ 85 (246)
T PF00769_consen 14 LRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR 85 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655555444433222222 244455555555555555555555555555554444
No 153
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=45.59 E-value=6.4e+02 Score=30.70 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=19.4
Q ss_pred HHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhH
Q 006756 251 KIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRM 286 (632)
Q Consensus 251 ~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~ 286 (632)
..+.|+-|-.++..|...+++|-..+.++.-..+.+
T Consensus 238 kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qL 273 (786)
T PF05483_consen 238 KEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQL 273 (786)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555555555555544444433
No 154
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=45.06 E-value=5.3e+02 Score=29.53 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=22.3
Q ss_pred hhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhH
Q 006756 412 KLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDL 456 (632)
Q Consensus 412 ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el 456 (632)
+|+-++...+-+|+.++.- ...+++.|..+.......-+..
T Consensus 214 ~l~~~l~~~q~~l~eL~~~----~~~L~~~Ias~e~~aA~~re~~ 254 (420)
T COG4942 214 QLNSELSADQKKLEELRAN----ESRLKNEIASAEAAAAKAREAA 254 (420)
T ss_pred HHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555542 4567777777775555333333
No 155
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.03 E-value=6.5e+02 Score=30.62 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=40.3
Q ss_pred cCCCCHHHHHHHhh-----hhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHH-HHHHHHHHHHHHHHHH
Q 006756 235 GKLRTVSDIVQEDA-----QSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRML-EEKDRLHYAFVEETRK 303 (632)
Q Consensus 235 gdLKTi~ei~~E~~-----rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~m-eEk~~lh~~yneE~~k 303 (632)
.-++|.+=|..... ...-.+++-++..-..-.++|..||++|.-.-.-++--| .|-+.+...|..|+.+
T Consensus 464 ATiRtaslvtrq~~Eheqe~~l~EQmSgYKrmRrqHqkqL~~lE~r~k~e~eehr~~ldrEle~~~~~f~~e~ek 538 (948)
T KOG0577|consen 464 ATIRTASLVTRQIQEHEQESELREQMSGYKRMRRQHQKQLLALEERLKGEREEHRARLDRELETLRANFSAELEK 538 (948)
T ss_pred HHHhHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 35666665543332 244566777777777888999999999875533333222 2333444555555443
No 156
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=44.93 E-value=5.9e+02 Score=30.09 Aligned_cols=52 Identities=21% Similarity=0.350 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhhH----HhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHH
Q 006756 390 KVEKEEALSKILQLEKQLDA----KQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKK 441 (632)
Q Consensus 390 krEke~~~~kil~LekqL~~----kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k 441 (632)
++|...+...|..+-++||+ ++.++..++-|...|..|+.+...+-.+...+
T Consensus 175 k~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~ 230 (546)
T KOG0977|consen 175 KAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK 230 (546)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34555555555555555554 67899999999999999998766554444433
No 157
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=44.73 E-value=6.3e+02 Score=30.31 Aligned_cols=38 Identities=37% Similarity=0.568 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhHHH-------------hhhhHHHHhhcC
Q 006756 391 VEKEEALSKILQLEKQLDAKQKLEMEIED-------------LKGKLEVMKHLG 431 (632)
Q Consensus 391 rEke~~~~kil~LekqL~~kQ~LELEi~q-------------LkG~L~VmKh~~ 431 (632)
.+.+.--+.|-.||++|.++-. +|++ +|-.|.++|.|+
T Consensus 310 ~e~e~~~~qI~~le~~l~~~~~---~leel~~kL~~~sDYeeIK~ELsiLk~ie 360 (629)
T KOG0963|consen 310 EEREKHKAQISALEKELKAKIS---ELEELKEKLNSRSDYEEIKKELSILKAIE 360 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhccHHHHHHHHHHHHHhh
Confidence 4566667788888888887643 3333 445566666663
No 158
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=44.63 E-value=5e+02 Score=29.85 Aligned_cols=90 Identities=12% Similarity=0.159 Sum_probs=43.4
Q ss_pred CHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHH------HHHHH-------
Q 006756 239 TVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEE------TRKMQ------- 305 (632)
Q Consensus 239 Ti~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE------~~kmQ------- 305 (632)
.|.-++.+...+.+.|-.-=...|+..|.-=++-|.-.|..--.++++-.|++-|...|.++ ++.+-
T Consensus 166 ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~g 245 (552)
T KOG2129|consen 166 KIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHG 245 (552)
T ss_pred HHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccC
Confidence 33333333333444332222333444444444555555555555666666677666666554 22222
Q ss_pred ---HHHHHHHHHHHHHHHHhhHHHHH
Q 006756 306 ---RLARDNVRRILEEQEKLSCELET 328 (632)
Q Consensus 306 ---~~ar~~~~rI~~e~ekl~~eLe~ 328 (632)
..-..|++.+-.|.++||..|-+
T Consensus 246 D~a~~~~~hi~~l~~EveRlrt~l~~ 271 (552)
T KOG2129|consen 246 DEAAAEKLHIDKLQAEVERLRTYLSR 271 (552)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234555555566666666544
No 159
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=44.47 E-value=3.9e+02 Score=27.84 Aligned_cols=47 Identities=9% Similarity=0.270 Sum_probs=34.0
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHH
Q 006756 254 VVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEE 300 (632)
Q Consensus 254 lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE 300 (632)
.++-+.+-...-++++.+++.-+.+....+-.+|.....++..|++-
T Consensus 18 ~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~ 64 (225)
T COG1842 18 LLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEA 64 (225)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455677888888888888888888888888887777654
No 160
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=44.23 E-value=2.3e+02 Score=26.76 Aligned_cols=46 Identities=24% Similarity=0.456 Sum_probs=24.8
Q ss_pred hhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHH
Q 006756 411 QKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLI 467 (632)
Q Consensus 411 Q~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~ 467 (632)
..|+-+++.|+.+.+.+=-|=| +-.++.+|-..++.||..|....|
T Consensus 71 ~~L~~el~~l~~ry~t~LellG-----------EK~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 71 EELEQELEELQQRYQTLLELLG-----------EKSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544433 334445555566666666666655
No 161
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=44.19 E-value=3.3e+02 Score=26.95 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=25.0
Q ss_pred HHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 006756 341 NKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALS 398 (632)
Q Consensus 341 ~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~ 398 (632)
+++.+..+.+|+.++.+... .++| -+.++.+.++.-++++++.+-
T Consensus 87 ~~~~a~~~~~~~~~ea~L~~-----------~~~~--~~~~~~~~~~~~~~~~~~~~i 131 (155)
T PRK06569 87 DSLESEFLIKKKNLEQDLKN-----------SINQ--NIEDINLAAKQFRTNKSEAII 131 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHH--HHHHHHHHHHHHHHhHHHHHH
Confidence 44555555566666655442 3344 345566677766766665443
No 162
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=44.19 E-value=97 Score=29.71 Aligned_cols=86 Identities=29% Similarity=0.379 Sum_probs=52.1
Q ss_pred HHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 006756 320 EKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSK 399 (632)
Q Consensus 320 ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~k 399 (632)
+++..+|.++...+|.-+.+|+- +-+++..|.++.. .-+.+.+ -..=..|+...+.+
T Consensus 19 ~~l~~~l~~~i~~~d~el~QLef-------q~kr~~~e~~~~~----~~~~~~i------------~~q~~~e~~~r~e~ 75 (131)
T PF11068_consen 19 EELLQELQEQIQQLDQELQQLEF-------QGKRMIKEIKKQN----AQQIQSI------------QQQFEQEKQERLEQ 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTS----SHHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcc----hhhHHHH------------HHHHHHHHHHHHHH
Confidence 35566777777888877777773 2334444433221 1122222 22224567778888
Q ss_pred HHHHHHHhhHHhhhhhhHHHhhhhHHHHh
Q 006756 400 ILQLEKQLDAKQKLEMEIEDLKGKLEVMK 428 (632)
Q Consensus 400 il~LekqL~~kQ~LELEi~qLkG~L~VmK 428 (632)
+-+|..||.+=+.|+|.-+=..|+++-+=
T Consensus 76 k~~l~~ql~qv~~L~lgsEv~qg~vE~~v 104 (131)
T PF11068_consen 76 KNQLLQQLEQVQKLELGSEVVQGQVESFV 104 (131)
T ss_dssp HHHHHHHHHHHHHS-TT-EEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEeeeeeEEEE
Confidence 89999999999999998776667665443
No 163
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=44.04 E-value=7.1e+02 Score=30.72 Aligned_cols=33 Identities=33% Similarity=0.445 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhh
Q 006756 390 KVEKEEALSKILQLEKQLDAKQKLEMEIEDLKG 422 (632)
Q Consensus 390 krEke~~~~kil~LekqL~~kQ~LELEi~qLkG 422 (632)
.++-+.+...+..++.++......++.+.+|.|
T Consensus 423 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 455 (908)
T COG0419 423 ERELEELEEEIKKLEEQINQLESKELMIAELAG 455 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555554443445555554
No 164
>PRK00106 hypothetical protein; Provisional
Probab=42.95 E-value=6.2e+02 Score=29.77 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 006756 333 LDSWSKQLN 341 (632)
Q Consensus 333 ld~r~k~L~ 341 (632)
|+.|..+|+
T Consensus 113 LekRee~Le 121 (535)
T PRK00106 113 LDRKDENLS 121 (535)
T ss_pred HHHHHHHHH
Confidence 333333333
No 165
>PRK12705 hypothetical protein; Provisional
Probab=42.64 E-value=6.1e+02 Score=29.62 Aligned_cols=63 Identities=24% Similarity=0.414 Sum_probs=30.7
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHH
Q 006756 326 LETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQK 390 (632)
Q Consensus 326 Le~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hk 390 (632)
|+.+...|+.+..+|++....-......|+...+ .....--..|.+-+..|.+.+++.+++.-
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~--~~~~~Le~ia~lt~~eak~~l~~~~~~~~ 155 (508)
T PRK12705 93 LDARAEKLDNLENQLEEREKALSARELELEELEK--QLDNELYRVAGLTPEQARKLLLKLLDAEL 155 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4455555555555555444333333333332211 11122223456666668888888888654
No 166
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.16 E-value=3.1e+02 Score=28.16 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhHHHHHHHhhHH
Q 006756 312 VRRILEEQEKLSCELETKKKKLD 334 (632)
Q Consensus 312 ~~rI~~e~ekl~~eLe~k~~eld 334 (632)
+..+-.+|.+|+.+|+.-..+++
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466677777777766555444
No 167
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.65 E-value=8.2e+02 Score=30.49 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHH
Q 006756 437 AVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEA 480 (632)
Q Consensus 437 ~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~a 480 (632)
+.+++..+....|.+-..++..++.--|||+.+--..++.+..+
T Consensus 796 El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m 839 (970)
T KOG0946|consen 796 ELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESM 839 (970)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 33444666666777777777777777777776666666665543
No 168
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=40.59 E-value=7.6e+02 Score=30.12 Aligned_cols=163 Identities=21% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Q 006756 258 LASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWS 337 (632)
Q Consensus 258 L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~ 337 (632)
|..+.+.-..+|++| +|+.+|-..|+.+ .+|++++-..+-. |-+.|.....+..-| .
T Consensus 61 lsqqaelis~qlqE~-----------rrle~e~~~lre~------sl~qkmrLe~qa~--Ele~l~~ae~agraE----a 117 (739)
T PF07111_consen 61 LSQQAELISRQLQEL-----------RRLEEEVRALRET------SLQQKMRLEAQAE--ELEALARAEKAGRAE----A 117 (739)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH------HHHHHhHHHHHHH--HHHHHHHHHHhhhhh----H
Q ss_pred HHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhH
Q 006756 338 KQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQKLEMEI 417 (632)
Q Consensus 338 k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi 417 (632)
.+|.-.-|..+.-|++|++..+..-.....++-..+.. |-..|+++-..+-+++..||+.| +.||...
T Consensus 118 e~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~---------Lt~aHq~~l~sL~~k~~~Le~~L---~~le~~r 185 (739)
T PF07111_consen 118 EELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSS---------LTQAHQEALASLTSKAEELEKSL---ESLETRR 185 (739)
T ss_pred HHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q ss_pred HHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHH
Q 006756 418 EDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTL 466 (632)
Q Consensus 418 ~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L 466 (632)
.+....|. .+.+.-+.|.+.|.-.-++|+.--++...|
T Consensus 186 ~~e~~~La-----------~~q~e~d~L~~qLsk~~~~le~q~tlv~~L 223 (739)
T PF07111_consen 186 AGEAKELA-----------EAQREADLLREQLSKTQEELEAQVTLVEQL 223 (739)
T ss_pred HHHHHHHH-----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 169
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=40.56 E-value=4e+02 Score=26.84 Aligned_cols=39 Identities=23% Similarity=0.518 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHhhHH
Q 006756 296 AFVEETRKMQRLAR-----------DNVRRILEEQEKLSCELETKKKKLD 334 (632)
Q Consensus 296 ~yneE~~kmQ~~ar-----------~~~~rI~~e~ekl~~eLe~k~~eld 334 (632)
.|.+|+..+...+. .+++.+..||..|+.-|+.--..|+
T Consensus 45 ~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~~leEhq~ale 94 (181)
T PF05769_consen 45 QYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENRELRQSLEEHQSALE 94 (181)
T ss_pred HHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444 2344445566666655555444444
No 170
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=40.54 E-value=3.8e+02 Score=26.65 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=67.2
Q ss_pred eeeecCCCCCCCchh--hhhhhccCCCCHHHHHHHhhh--hHHHHHHHHHhHHHhhhh-hHHHHHHHhhhhhHHHHhHHH
Q 006756 214 WFARADDNTSEGPIG--EYLRQEGKLRTVSDIVQEDAQ--SKIHVVAHLASKIDMKNE-DLSELQCKFNETTMSLSRMLE 288 (632)
Q Consensus 214 WvAradDy~~~g~iG--~~LrK~gdLKTi~ei~~E~~r--k~~~lv~~L~n~I~~knk-~l~elE~k~ne~t~sL~r~me 288 (632)
|++.+++..+.+..+ .|||-.+-|-+...|..-+.+ +...+=..+..||+.+.. .-.+.+...-+--.--.|+-.
T Consensus 15 ~~~~~~~~~~~~~~~~~s~LR~~tallDpa~~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~err~~EE~~EE~Rl~r 94 (157)
T PF15236_consen 15 NLGKASRVTSMQSSSKTSFLRGMTALLDPAQIEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRRREEEEEEERLAR 94 (157)
T ss_pred hhcccccccccccccccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 566777777666555 899998888888887765554 344444556666665543 344555555566666677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006756 289 EKDRLHYAFVEETRKMQRLARDN 311 (632)
Q Consensus 289 Ek~~lh~~yneE~~kmQ~~ar~~ 311 (632)
++..|...|-+|..++.++--..
T Consensus 95 ere~~q~~~E~E~~~~~~KEe~~ 117 (157)
T PF15236_consen 95 EREELQRQFEEEQRKQREKEEEQ 117 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999998777654443
No 171
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=40.44 E-value=3.5e+02 Score=26.23 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 249 QSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRML-EEKDRLHYAFVEETRKMQRLARDNVRRI 315 (632)
Q Consensus 249 rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~m-eEk~~lh~~yneE~~kmQ~~ar~~~~rI 315 (632)
..+..+|.++...........+.-+..|++++.+|++|+ .-.+...-++-.-|+-+|..-+...++|
T Consensus 53 ~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki 120 (146)
T PF08702_consen 53 SEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQPSNIRVLQNILRSNRQKI 120 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777889999999999999 7788888888888888877666666655
No 172
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.04 E-value=4e+02 Score=26.70 Aligned_cols=57 Identities=37% Similarity=0.444 Sum_probs=33.1
Q ss_pred HhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHH
Q 006756 410 KQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARREL 484 (632)
Q Consensus 410 kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~l 484 (632)
-+.|..|.+.|+-.+. .+..+++.|..+++....++..++.=-++|+ .=+..||+-.
T Consensus 99 ~~~~~~e~~~l~~e~~-----------~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~-------~Im~RARkl~ 155 (161)
T TIGR02894 99 DQALQKENERLKNQNE-----------SLQKRNEELEKELEKLRQRLSTIEEDYQTLI-------DIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 3445555555554443 3445566677777666666666666666666 3455566643
No 173
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=39.67 E-value=3.9e+02 Score=26.45 Aligned_cols=132 Identities=20% Similarity=0.240 Sum_probs=66.0
Q ss_pred HHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Q 006756 255 VAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLD 334 (632)
Q Consensus 255 v~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld 334 (632)
|..|--.|...=..|..+-+....-..-+.++-+++.+|...|..|-. ....+......+-+..+.=+.+|.++...|+
T Consensus 24 v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~-~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le 102 (158)
T PF09744_consen 24 VKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKE-LRKQAEEELLELEDQWRQERKDLQSQVEQLE 102 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344455555555566677777788888887765322 2333333444444455555555555555555
Q ss_pred HHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006756 335 SWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQL 407 (632)
Q Consensus 335 ~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL 407 (632)
...++|.. ..+|.+-+...++.+.++- -.++-.-|.|+.+-+.+-.-.++++=
T Consensus 103 ~e~r~L~~-------------------~~~~~~~q~~rlee~e~~l-~~e~~~l~er~~e~l~~~~e~ver~k 155 (158)
T PF09744_consen 103 EENRQLEL-------------------KLKNLSDQSSRLEEREAEL-KKEYNRLHERERELLRKLKEHVERQK 155 (158)
T ss_pred HHHHHHHH-------------------HhhhhhhhccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555541 1122333333344332220 12344556666666666666655553
No 174
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=39.12 E-value=16 Score=23.71 Aligned_cols=20 Identities=25% Similarity=0.650 Sum_probs=13.3
Q ss_pred eeccCCCCCCcCccCchhHHhhh
Q 006756 40 LRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 40 ~~CP~C~gkkK~dy~~~~LLqHA 62 (632)
|.||.|... +..-..|.+|-
T Consensus 1 y~C~~C~~~---f~~~~~l~~H~ 20 (23)
T PF00096_consen 1 YKCPICGKS---FSSKSNLKRHM 20 (23)
T ss_dssp EEETTTTEE---ESSHHHHHHHH
T ss_pred CCCCCCCCc---cCCHHHHHHHH
Confidence 789999733 33455666773
No 175
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=39.12 E-value=5.3e+02 Score=27.87 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=7.5
Q ss_pred HHHHHhhHHHHHHHHHH
Q 006756 326 LETKKKKLDSWSKQLNK 342 (632)
Q Consensus 326 Le~k~~eld~r~k~L~k 342 (632)
|+||..=.+=|.+-++-
T Consensus 133 l~aK~~WYeWR~~ll~g 149 (325)
T PF08317_consen 133 LEAKKMWYEWRMQLLEG 149 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 176
>PRK14143 heat shock protein GrpE; Provisional
Probab=38.21 E-value=3e+02 Score=28.97 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=19.0
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 006756 326 LETKKKKLDSWSKQLNKREALTERERQKLDADRQ 359 (632)
Q Consensus 326 Le~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~ 359 (632)
|+....+++....++-.+.|.-++-|++...|++
T Consensus 76 l~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e 109 (238)
T PRK14143 76 LESLKQELEELNSQYMRIAADFDNFRKRTSREQE 109 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344455666777777777776655
No 177
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=38.06 E-value=7.4e+02 Score=29.24 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=7.9
Q ss_pred hhHHHhhhhHHHHhh
Q 006756 415 MEIEDLKGKLEVMKH 429 (632)
Q Consensus 415 LEi~qLkG~L~VmKh 429 (632)
.|.+.|..-|+.||-
T Consensus 254 ~Ekeel~~~Lq~~~d 268 (596)
T KOG4360|consen 254 HEKEELDEHLQAYKD 268 (596)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444555555555554
No 178
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=37.27 E-value=8.2e+02 Score=29.51 Aligned_cols=118 Identities=17% Similarity=0.254 Sum_probs=69.7
Q ss_pred HHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhh----------hHHHHhHHHHHH----HHHHHHHHHHHHHHHH-
Q 006756 243 IVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNET----------TMSLSRMLEEKD----RLHYAFVEETRKMQRL- 307 (632)
Q Consensus 243 i~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~----------t~sL~r~meEk~----~lh~~yneE~~kmQ~~- 307 (632)
....-...+...+....-.|.+.|.|...+-...+.- +.++..-+-+++ +.-..|.+.|..+-..
T Consensus 155 ~l~~te~~T~~A~sa~n~~I~alndh~~~~kes~d~s~~~~w~sv~~aL~~~~~~ad~da~AEk~aRn~~e~L~~i~n~g 234 (657)
T KOG1854|consen 155 LLQSTENITKLATSAKNVAIGALNDHVNILKESLDDSKEAGWNSVTTALKLPESAADKDATAEKSARNAQEKLVTIANLG 234 (657)
T ss_pred HHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 3444445666666677777888888888666666555 556655554433 4455555666665443
Q ss_pred -------HHHHHHHHHHHHHHhhHHHHHHHhhHH---HHHHHHHHHHhhhHHHHHhhHHHHHh
Q 006756 308 -------ARDNVRRILEEQEKLSCELETKKKKLD---SWSKQLNKREALTERERQKLDADRQQ 360 (632)
Q Consensus 308 -------ar~~~~rI~~e~ekl~~eLe~k~~eld---~r~k~L~k~~a~~~~er~kL~~Ek~k 360 (632)
+-.++...-+--.||..+|++-.+++- +-..=+.+.--.-+.-|+.++.|++.
T Consensus 235 ~~~eTaq~nPlI~~t~~ta~kLs~qldnv~~ev~~~~se~~vv~ky~~~ve~ar~~F~~EL~s 297 (657)
T KOG1854|consen 235 ETGETAQANPLITATKDTAHKLSNQLDNVKREVSSSNSEAEVVGKYSELVEKARHQFEQELES 297 (657)
T ss_pred ccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233455555556677777777777632 22222334444455667778877775
No 179
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=36.85 E-value=67 Score=30.67 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=38.7
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCcee-eeeccC--CCCcceEEEEeCCChhchhhHHH
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEV-RIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv-~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
.+.|-|++. ..+...|++ |..|.++.. ....+. .-+.|++.|.|.+. ..-..|+.
T Consensus 36 ~lfVgnL~~--------~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~-e~A~~Al~ 94 (144)
T PLN03134 36 KLFIGGLSW--------GTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE-GAATAAIS 94 (144)
T ss_pred EEEEeCCCC--------CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCH-HHHHHHHH
Confidence 456788875 347788999 999987544 444443 34789999999865 56666665
No 180
>PTZ00464 SNF-7-like protein; Provisional
Probab=36.49 E-value=5e+02 Score=26.80 Aligned_cols=20 Identities=20% Similarity=0.269 Sum_probs=11.0
Q ss_pred HHHHhhHHHHHHHHHHHHhh
Q 006756 327 ETKKKKLDSWSKQLNKREAL 346 (632)
Q Consensus 327 e~k~~eld~r~k~L~k~~a~ 346 (632)
......|+.|...|+++...
T Consensus 17 ~d~~~~l~~r~~~l~kKi~~ 36 (211)
T PTZ00464 17 EDASKRIGGRSEVVDARINK 36 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666665543
No 181
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=36.43 E-value=9e+02 Score=29.76 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcH--HHHHHHHHHHHHHHhHHhhHHHHHH
Q 006756 390 KVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDA--AVQKKMKEMNDELESKIDDLDEMES 461 (632)
Q Consensus 390 krEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~--~~~~k~~~l~~~l~ek~~el~~~e~ 461 (632)
+++.+.+..++.+ +++.|+.-+.+.+-+..+..-+-...-+ .+..+..+++.+|--+.+.|..+-+
T Consensus 580 ~~~i~~l~~el~e------q~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~~~~l~~~~e~l~~~~~ 647 (809)
T KOG0247|consen 580 EEEIEALDQELEE------QKMELQQKFSEKKKAMAKVRGILANTSPECSVAAKLLELQSKLWFKDEKLKHLTA 647 (809)
T ss_pred hhhhHHHHHHHHh------hhHHHHhhccchhHHHhhhccccCCCchhhhHHHHHHHHHHHhcccHHHHHHhhc
Confidence 4455555444443 3444555555555544444444222222 4555566666666666666654433
No 182
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=36.38 E-value=12 Score=44.48 Aligned_cols=107 Identities=28% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHh---hHHHHHhhhHHHHHHHHHHHHHH
Q 006756 317 EEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQL---ASMEQKKADENVLRLVEEQKVEK 393 (632)
Q Consensus 317 ~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~l---A~~EQ~kade~vlkLve~hkrEk 393 (632)
.+...|+.||+ .|-.++..++++++.-+.-|+||++= .-=..+...|.- .-+++...-|+-++-+..-+.+-
T Consensus 291 ~~a~~LrDElD----~lR~~a~r~~klE~~ve~YKkKLed~-~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~ql 365 (713)
T PF05622_consen 291 REARALRDELD----ELREKADRADKLENEVEKYKKKLEDL-EDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQL 365 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455665554 45556677888888888888888632 000011111111 11222223333344444445566
Q ss_pred HHHHHHHHHHHHHhhHH----hhhhhhHHHhhhhHHHHh
Q 006756 394 EEALSKILQLEKQLDAK----QKLEMEIEDLKGKLEVMK 428 (632)
Q Consensus 394 e~~~~kil~LekqL~~k----Q~LELEi~qLkG~L~VmK 428 (632)
+..-..|.+|+.+|+.. +.|+.|+.+|+.++..+.
T Consensus 366 e~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~ 404 (713)
T PF05622_consen 366 EEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALE 404 (713)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888887664 457888888888887654
No 183
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=36.36 E-value=4.9e+02 Score=26.67 Aligned_cols=58 Identities=14% Similarity=0.259 Sum_probs=35.7
Q ss_pred HHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLAR 309 (632)
Q Consensus 252 ~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar 309 (632)
..|=..+..+...-...-++|.+.|...+.-|...+-++.+....-+.++..|....+
T Consensus 21 ~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~ 78 (206)
T PF14988_consen 21 EKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRR 78 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344444445555556666777777777777777777777666666666665555443
No 184
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=35.36 E-value=5.2e+02 Score=26.64 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhh
Q 006756 300 ETRKMQRLARDNVRRILEEQEKLSC---ELETKKKKLDSWSKQLNKREALTERERQKLDADRQQN 361 (632)
Q Consensus 300 E~~kmQ~~ar~~~~rI~~e~ekl~~---eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn 361 (632)
.++..|+ |-.-..-+-++++.|+. .|++..+.|-..++++++=.-+=..+-..|+++..+.
T Consensus 51 q~~s~Qq-al~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 51 QLKSLQQ-ALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444443 33333344455555553 4566666666666666654444444444444444443
No 185
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=35.27 E-value=7.5e+02 Score=28.51 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhhc
Q 006756 576 EIYMAVTTALKELNEYN 592 (632)
Q Consensus 576 ev~~aV~~Al~E~neyN 592 (632)
.|+.-|.+|+.-|.-|.
T Consensus 468 ~~~~r~~~a~~~iD~~~ 484 (511)
T PF09787_consen 468 GVARRVKRAASVIDSFS 484 (511)
T ss_pred hHHHHHHHHHHHHhHhh
Confidence 58899999999998874
No 186
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=35.04 E-value=38 Score=23.53 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhhH
Q 006756 391 VEKEEALSKILQLEKQLDA 409 (632)
Q Consensus 391 rEke~~~~kil~LekqL~~ 409 (632)
+|.+.+.++|..||+||..
T Consensus 1 ~E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLSE 19 (23)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 3677888999999999974
No 187
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=34.84 E-value=27 Score=26.53 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=11.1
Q ss_pred Eee-cCCeeeccCCCC
Q 006756 33 KVR-VNGTLRCPFCSG 47 (632)
Q Consensus 33 kVk-~~~~~~CP~C~g 47 (632)
+|. .+.+|.||||..
T Consensus 17 ~~~~~~~~w~C~~C~~ 32 (40)
T PF04810_consen 17 QFDDGGKTWICNFCGT 32 (40)
T ss_dssp EEETTTTEEEETTT--
T ss_pred eEcCCCCEEECcCCCC
Confidence 566 678999999973
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=34.50 E-value=1e+02 Score=32.36 Aligned_cols=44 Identities=18% Similarity=0.368 Sum_probs=30.9
Q ss_pred HHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHH
Q 006756 400 ILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLD 457 (632)
Q Consensus 400 il~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~ 457 (632)
+++|..||+ .|..||.+|+|+++++-|- |+.|.+.-.+-..+|+
T Consensus 56 ~~~l~~ql~---~lq~ev~~LrG~~E~~~~~-----------l~~~~~rq~~~y~dld 99 (263)
T PRK10803 56 LTQLQQQLS---DNQSDIDSLRGQIQENQYQ-----------LNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHH---HHHHHHHHHhhHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 567777776 4778999999999998882 4455555545455554
No 189
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=34.47 E-value=28 Score=26.93 Aligned_cols=17 Identities=24% Similarity=0.784 Sum_probs=11.1
Q ss_pred eEee-cCCeeeccCCCCC
Q 006756 32 YKVR-VNGTLRCPFCSGK 48 (632)
Q Consensus 32 ~kVk-~~~~~~CP~C~gk 48 (632)
+.+. ....++||+|.+.
T Consensus 13 ~~~~~~~~~~~Cp~CG~~ 30 (46)
T PRK00398 13 VELDEYGTGVRCPYCGYR 30 (46)
T ss_pred EEECCCCCceECCCCCCe
Confidence 3444 3347999999743
No 190
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=34.46 E-value=4.9e+02 Score=26.70 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=12.7
Q ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHHh
Q 006756 317 EEQEKLSCELETKKKKLDSWSKQLNKREA 345 (632)
Q Consensus 317 ~e~ekl~~eLe~k~~eld~r~k~L~k~~a 345 (632)
.|-++|+.+||-.+.......++..++..
T Consensus 141 kEReRLkq~lE~Ek~~~~~~EkE~~K~~~ 169 (192)
T PF09727_consen 141 KERERLKQQLEQEKAQQKKLEKEHKKLVS 169 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 191
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=34.16 E-value=6.5e+02 Score=27.48 Aligned_cols=100 Identities=25% Similarity=0.382 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhh----hhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHH
Q 006756 386 VEEQKVEKEEALSKILQLEKQLDAKQK----LEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMES 461 (632)
Q Consensus 386 ve~hkrEke~~~~kil~LekqL~~kQ~----LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~ 461 (632)
+..-+.+-.++|.+|.+|=.|.++-.. +=-++..++-.-.-|.-+ -.+...+++++++++.....++.+++.
T Consensus 167 i~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~----~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 167 IDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEE----FVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333445566678888888777754332 112333344443333322 345567788888888888888887777
Q ss_pred hhHHHHHH-----HhhccHHHHHHHHHHHHhhh
Q 006756 462 LNKTLIAK-----ERQSNDELQEARRELIQGLS 489 (632)
Q Consensus 462 ~nq~L~~k-----er~sndELq~aRk~lI~~l~ 489 (632)
.-.+|..+ .|..-++|++-.+++-.-|.
T Consensus 243 ~ik~l~~~~~~~~~~~~~ee~kera~ei~EKfk 275 (294)
T COG1340 243 KIKALRAKEKAAKRREKREELKERAEEIYEKFK 275 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777654 44455667766666655554
No 192
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=34.04 E-value=18 Score=29.17 Aligned_cols=11 Identities=45% Similarity=1.213 Sum_probs=7.9
Q ss_pred eeeccCCCCCCc
Q 006756 39 TLRCPFCSGKKK 50 (632)
Q Consensus 39 ~~~CP~C~gkkK 50 (632)
...|||| |.+.
T Consensus 3 LkPCPFC-G~~~ 13 (61)
T PF14354_consen 3 LKPCPFC-GSAD 13 (61)
T ss_pred CcCCCCC-CCcc
Confidence 3579999 6654
No 193
>PLN02678 seryl-tRNA synthetase
Probab=34.04 E-value=2.8e+02 Score=31.75 Aligned_cols=55 Identities=22% Similarity=0.396 Sum_probs=35.6
Q ss_pred CCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhhccCCccccc--------ccccC
Q 006756 433 EDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIG--------VKRLG 504 (632)
Q Consensus 433 ~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~~~~~~~~~Ig--------iKrmG 504 (632)
++-++++.++.+|.+++...+.++. ++++...++...|..++.....|| |++.|
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~~------------------~~~~~l~~~~~~iPNi~~~~VP~G~de~~n~~vr~~g 132 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEVQ------------------EAKAALDAKLKTIGNLVHDSVPVSNDEANNAVVRTWG 132 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCcCCCEEEEEEc
Confidence 4456777778888877777776663 566666677777777654333333 66667
Q ss_pred C
Q 006756 505 E 505 (632)
Q Consensus 505 e 505 (632)
.
T Consensus 133 ~ 133 (448)
T PLN02678 133 E 133 (448)
T ss_pred C
Confidence 4
No 194
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=33.90 E-value=9.9e+02 Score=29.46 Aligned_cols=31 Identities=35% Similarity=0.529 Sum_probs=22.3
Q ss_pred HHHHHHHhhHHhhhhhhHHH----hhhhHHHHhhc
Q 006756 400 ILQLEKQLDAKQKLEMEIED----LKGKLEVMKHL 430 (632)
Q Consensus 400 il~LekqL~~kQ~LELEi~q----LkG~L~VmKh~ 430 (632)
++++|+.+..|=+=.+|-+| |+.||.+++.-
T Consensus 207 ~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkE 241 (782)
T COG0466 207 LLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKE 241 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777666666666 77888888764
No 195
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=33.90 E-value=4.4e+02 Score=25.40 Aligned_cols=25 Identities=28% Similarity=0.427 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHh
Q 006756 387 EEQKVEKEEALSKILQLEKQLDAKQ 411 (632)
Q Consensus 387 e~hkrEke~~~~kil~LekqL~~kQ 411 (632)
+++....+.+-.+|..||.+|+.-.
T Consensus 69 ~~~~~~~E~l~rriq~LEeele~ae 93 (143)
T PF12718_consen 69 EKRKSNAEQLNRRIQLLEEELEEAE 93 (143)
T ss_pred HHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 4445566688889999998888654
No 196
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=33.65 E-value=7.1e+02 Score=29.78 Aligned_cols=59 Identities=8% Similarity=0.077 Sum_probs=44.5
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 253 HVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDN 311 (632)
Q Consensus 253 ~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~ 311 (632)
.+++.|..++......+.++...|....-.+..+-.+...+.+...+|+.++.......
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~ 346 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQ 346 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777778788888888888887888888888888888776655433
No 197
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=33.57 E-value=2.2e+02 Score=28.54 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=29.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006756 376 KKADENVLRLVEEQKVEKEEALSKILQLEKQLDA 409 (632)
Q Consensus 376 ~kade~vlkLve~hkrEke~~~~kil~LekqL~~ 409 (632)
++||+=|.--.=.|.||.|++...|..||..+..
T Consensus 110 ~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 110 QKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4678777777788999999999999999988765
No 198
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.41 E-value=5.6e+02 Score=26.46 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=25.4
Q ss_pred HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHH
Q 006756 409 AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLI 467 (632)
Q Consensus 409 ~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~ 467 (632)
+++.|..+|.+|+..++.++-- .....+-++.++.++.+...+++.++...+.|.
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~----~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVY----NEQLERQVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444431 122333444555555555555544444444443
No 199
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.95 E-value=5.1e+02 Score=25.83 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=8.3
Q ss_pred HHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHH
Q 006756 258 LASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRL 293 (632)
Q Consensus 258 L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~l 293 (632)
++.+|...+..+++++.+.......|..+..+...|
T Consensus 93 l~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L 128 (194)
T PF08614_consen 93 LAQQLVELNDELQELEKELSEKERRLAELEAELAQL 128 (194)
T ss_dssp ---------------------HHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 555555666666666666666666666555554444
No 200
>PRK10698 phage shock protein PspA; Provisional
Probab=32.82 E-value=5.7e+02 Score=26.35 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=44.0
Q ss_pred HHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 006756 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLH---YAFVEETRKMQRLARDNV 312 (632)
Q Consensus 252 ~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh---~~yneE~~kmQ~~ar~~~ 312 (632)
+.++....+=+..-+..+.+|+.-+.+.-..+.++|-.+..+. ..+...+.+.+..|.--.
T Consensus 16 n~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al 79 (222)
T PRK10698 16 NALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELAL 79 (222)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666677888899999999999999999998877664 455556666666655433
No 201
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=32.71 E-value=2.3e+02 Score=23.88 Aligned_cols=53 Identities=25% Similarity=0.444 Sum_probs=36.7
Q ss_pred HHHHHhhHHhhhhhhHHHhhhhHHHHhh-cCCCCcHHHHHHHHHHHHHHHhHHhhHHHH
Q 006756 402 QLEKQLDAKQKLEMEIEDLKGKLEVMKH-LGDEDDAAVQKKMKEMNDELESKIDDLDEM 459 (632)
Q Consensus 402 ~LekqL~~kQ~LELEi~qLkG~L~VmKh-~~~~~d~~~~~k~~~l~~~l~ek~~el~~~ 459 (632)
-|+-++.+||.+.-|+..++........ +. +.-++..+|..++.....+|+.+
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLq-----eaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQ-----EAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4778889999999999998866554443 32 34456667777777666666543
No 202
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=32.61 E-value=90 Score=27.12 Aligned_cols=42 Identities=29% Similarity=0.490 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHh
Q 006756 304 MQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREA 345 (632)
Q Consensus 304 mQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a 345 (632)
+++.+-.....++.+|-.|+.++++..++|....+.|.+.+.
T Consensus 30 l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 30 LQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778889999999999999999999999999986554
No 203
>PTZ00491 major vault protein; Provisional
Probab=32.25 E-value=7e+02 Score=31.01 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=19.1
Q ss_pred hHHHhhhhhHHHHHHHhhhhhHHHHhHH
Q 006756 260 SKIDMKNEDLSELQCKFNETTMSLSRML 287 (632)
Q Consensus 260 n~I~~knk~l~elE~k~ne~t~sL~r~m 287 (632)
|-+...+=+++.+|..=..|..+|++-.
T Consensus 626 N~lvit~VDvqsvEpvD~~tr~~LqkSV 653 (850)
T PTZ00491 626 NNLVITNVDVQSVEPVDERTRDSLQKSV 653 (850)
T ss_pred CCeEEEEEeeeeeeecCHHHHHHHHHHH
Confidence 4455666677777777777777777655
No 204
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=32.20 E-value=72 Score=36.06 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=44.8
Q ss_pred eeecce--EEEEeccccccCCccccCChhhHhh-hcccCC---ceeeeeccCCCCcceEEEEeCCChhchhhHHHHHhhh
Q 006756 117 YVWPWM--GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP---VEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAF 190 (632)
Q Consensus 117 iVWPwm--gII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p---~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~lek~F 190 (632)
.++||. ..|-|+|.. .+...|++ |+.|.. ..++.+-...+.+|+++|+|.+.-.- ..|+..=+++
T Consensus 389 ~~~~ps~~L~v~NLp~~--------~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A-~~Al~~ln~~ 459 (481)
T TIGR01649 389 NIQPPSATLHLSNIPLS--------VSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDA-VEALIALNHH 459 (481)
T ss_pred ccCCCCcEEEEecCCCC--------CCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHH-HHHHHHhcCC
Confidence 457885 456688753 36778999 998874 44555444556689999999984443 3555544455
Q ss_pred hhcC
Q 006756 191 DADH 194 (632)
Q Consensus 191 e~~~ 194 (632)
...+
T Consensus 460 ~l~~ 463 (481)
T TIGR01649 460 QLNE 463 (481)
T ss_pred ccCC
Confidence 4443
No 205
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=31.69 E-value=2.4e+02 Score=23.49 Aligned_cols=53 Identities=38% Similarity=0.498 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhHHhhhhhhHHHhhhhHHH---HhhcCCCCcHHHHHHHHHHHHHHHhHH
Q 006756 398 SKILQLEKQLDAKQKLEMEIEDLKGKLEV---MKHLGDEDDAAVQKKMKEMNDELESKI 453 (632)
Q Consensus 398 ~kil~LekqL~~kQ~LELEi~qLkG~L~V---mKh~~~~~d~~~~~k~~~l~~~l~ek~ 453 (632)
+.|.+|+++|. +++-+|+.+.++|.- +.+-|.+--..-+.++.++..++.--.
T Consensus 4 ~E~~rL~Kel~---kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~ 59 (66)
T PF10458_consen 4 AEIERLEKELE---KLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLE 59 (66)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777765 778888889998863 444454433444555555555554333
No 206
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=31.55 E-value=1.2e+03 Score=29.63 Aligned_cols=143 Identities=19% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHH-HHhHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 006756 241 SDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMS-LSRMLEEKD--------RLHYAFVEETRKMQRLARDN 311 (632)
Q Consensus 241 ~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~s-L~r~meEk~--------~lh~~yneE~~kmQ~~ar~~ 311 (632)
+|+..--..-.+++...|.+.+...-..-.++...+...-.+ |++++.+.. ..++.-..||++.++..|-+
T Consensus 1025 ~d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e 1104 (1189)
T KOG1265|consen 1025 SDNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRME 1104 (1189)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHH
Q 006756 312 VRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKV 391 (632)
Q Consensus 312 ~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkr 391 (632)
..+. +-.-+=+.+.+..++||.+.--+-- =.+|+.|. ++++-..-+|++.|..
T Consensus 1105 ~ik~-~~~~kdK~e~er~~rE~n~s~i~~~------V~e~krL~--------------------~~~~k~~e~L~k~~~~ 1157 (1189)
T KOG1265|consen 1105 DIKV-DKVIKDKAERERRKRELNSSNIKEF------VEERKRLA--------------------EKQSKRQEQLVKKHLE 1157 (1189)
T ss_pred hhhh-ccccccHHHHHHHHHHHHHHHHHHH------HHHHHHHH--------------------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q 006756 392 EKEEALSKILQLEKQLDAK 410 (632)
Q Consensus 392 Eke~~~~kil~LekqL~~k 410 (632)
--+.+...--+|++|+.++
T Consensus 1158 ~leql~e~~kal~~e~~~~ 1176 (1189)
T KOG1265|consen 1158 VLEQLAEEEKALDAEAEQE 1176 (1189)
T ss_pred HHHHHHHhhHHHHHHHHHH
No 207
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=31.26 E-value=1.3e+03 Score=30.10 Aligned_cols=38 Identities=16% Similarity=0.339 Sum_probs=20.0
Q ss_pred HHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH
Q 006756 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE 289 (632)
Q Consensus 252 ~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE 289 (632)
...++-|...|......+.+++...+.....++.+-.+
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555544444
No 208
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=31.16 E-value=5.1e+02 Score=25.29 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006756 298 VEETRKMQRLARDNVRRI 315 (632)
Q Consensus 298 neE~~kmQ~~ar~~~~rI 315 (632)
|.|+.+|...+...++-+
T Consensus 62 n~eL~~Lk~~~~~~v~~L 79 (177)
T PF13870_consen 62 NKELLKLKKKIGKTVQIL 79 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555554444444433
No 209
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=30.83 E-value=3.3e+02 Score=32.47 Aligned_cols=46 Identities=30% Similarity=0.441 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhh
Q 006756 381 NVLRLVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKH 429 (632)
Q Consensus 381 ~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh 429 (632)
...+.+++++|=++-+.-.+.+||-. +|+|.-||++++-+.+-.|.
T Consensus 76 s~~r~~~e~~RI~~sVs~EL~ele~k---rqel~seI~~~n~kiEelk~ 121 (907)
T KOG2264|consen 76 SIGRILREQKRILASVSLELTELEVK---RQELNSEIEEINTKIEELKR 121 (907)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHH
Confidence 45677889999999999888888753 69999999998877665444
No 210
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=30.81 E-value=8.5e+02 Score=27.76 Aligned_cols=23 Identities=43% Similarity=0.556 Sum_probs=10.2
Q ss_pred HHHHHHhhHHhhhhhhHHHhhhhHHH
Q 006756 401 LQLEKQLDAKQKLEMEIEDLKGKLEV 426 (632)
Q Consensus 401 l~LekqL~~kQ~LELEi~qLkG~L~V 426 (632)
--|+|+|++|+ -|.+||++++.|
T Consensus 359 d~L~keLeekk---releql~~q~~v 381 (442)
T PF06637_consen 359 DSLAKELEEKK---RELEQLKMQLAV 381 (442)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHh
Confidence 33444444432 244455555543
No 211
>smart00360 RRM RNA recognition motif.
Probab=30.59 E-value=74 Score=23.80 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=29.3
Q ss_pred cCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHH
Q 006756 139 LDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 139 G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~ 184 (632)
+.+...|+. |+.|.++ .+.....+ ..++|++.|.|... ..-..|+
T Consensus 7 ~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~-~~a~~a~ 55 (71)
T smart00360 7 DVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESE-EDAEKAL 55 (71)
T ss_pred ccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCH-HHHHHHH
Confidence 346778888 8889865 44444443 35789999999653 4434443
No 212
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=30.46 E-value=1.7e+02 Score=26.26 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=41.1
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHH
Q 006756 254 VVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETR 302 (632)
Q Consensus 254 lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~ 302 (632)
-.+.+-.++..-|-.|..||.+..-....|+.+++.+++.+..|.++..
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567778888888999999999999999999999988888888777653
No 213
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=30.45 E-value=67 Score=33.86 Aligned_cols=66 Identities=18% Similarity=0.133 Sum_probs=52.6
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hccc-CCceeeeeccCCC-CcceEEEEeCCChhchhhHHHHHhhhhhcCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVF-KPVEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDFEKAFDADHQ 195 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F-~p~kv~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~lek~Fe~~~~ 195 (632)
=.++|-|.++ |.....|++ |..| .+.+|-.=|++.| ..|++-|.|...-.++.--..|+. |..+|.
T Consensus 84 ~~v~v~NL~~--------~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG~ 152 (243)
T KOG0533|consen 84 TKVNVSNLPY--------GVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG-VALDGR 152 (243)
T ss_pred ceeeeecCCc--------CcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC-cccCCc
Confidence 3467788865 667788899 9999 7888888888887 559999999999888888888887 665543
No 214
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=30.33 E-value=7.1e+02 Score=26.74 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=6.2
Q ss_pred HHHHHHHHHHh
Q 006756 616 VISYIVGNIRR 626 (632)
Q Consensus 616 ~~~~~~~~~k~ 626 (632)
.++||+.-+..
T Consensus 404 ~~~~~l~~~~~ 414 (423)
T TIGR01843 404 VIEYLLKPITD 414 (423)
T ss_pred HHHHHHHHHHH
Confidence 46666655543
No 215
>smart00400 ZnF_CHCC zinc finger.
Probab=30.31 E-value=63 Score=25.75 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=27.0
Q ss_pred hhcCCeEee-cCCeeeccCCCCCCcCccCchhHHhhhccC
Q 006756 27 LRAGKYKVR-VNGTLRCPFCSGKKKQDYKHKDLLQHASGV 65 (632)
Q Consensus 27 Lk~g~~kVk-~~~~~~CP~C~gkkK~dy~~~~LLqHA~gv 65 (632)
=++.++.|. ..+.|+|=.|..+ .+.=+|+++-.|+
T Consensus 10 d~~pSf~v~~~kn~~~Cf~cg~g----Gd~i~fv~~~~~~ 45 (55)
T smart00400 10 EKTPSFSVSPDKQFFHCFGCGAG----GNVISFLMKYDKL 45 (55)
T ss_pred CCCCCEEEECCCCEEEEeCCCCC----CCHHHHHHHHHCc
Confidence 356678898 7789999999633 4677889988775
No 216
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=30.12 E-value=44 Score=30.21 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=27.2
Q ss_pred eEEEEeccccccCCccccCChhhHhhhcccCCceeeeeccCCCCcceEEEEeCCC
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d~~~F~p~kv~~l~~~~Gh~G~aIV~F~~d 176 (632)
+.+|.|.|+..+-. . --..|+.|+.=|+++|-.+- .|.|||.|.+-
T Consensus 4 ~L~V~NLP~~~d~~-~---I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~ 49 (90)
T PF11608_consen 4 LLYVSNLPTNKDPS-S---IKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQ 49 (90)
T ss_dssp EEEEES--TTS-HH-H---HHHHHHHHHHTTT--EEE-------TT-EEEEESSH
T ss_pred EEEEecCCCCCCHH-H---HHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCH
Confidence 46789999866421 1 23566668889999999984 27899999874
No 217
>PRK01156 chromosome segregation protein; Provisional
Probab=29.74 E-value=1.1e+03 Score=28.76 Aligned_cols=10 Identities=10% Similarity=-0.260 Sum_probs=3.8
Q ss_pred HHHHhhHHHH
Q 006756 327 ETKKKKLDSW 336 (632)
Q Consensus 327 e~k~~eld~r 336 (632)
++..++|...
T Consensus 262 e~~l~el~~~ 271 (895)
T PRK01156 262 ESDLSMELEK 271 (895)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 218
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=29.60 E-value=28 Score=33.36 Aligned_cols=13 Identities=38% Similarity=1.099 Sum_probs=10.1
Q ss_pred cCCeeeccCCCCC
Q 006756 36 VNGTLRCPFCSGK 48 (632)
Q Consensus 36 ~~~~~~CP~C~gk 48 (632)
+++.|.||.|.+.
T Consensus 120 ~~~~f~Cp~Cg~~ 132 (147)
T smart00531 120 MDGTFTCPRCGEE 132 (147)
T ss_pred CCCcEECCCCCCE
Confidence 3567999999854
No 219
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=29.53 E-value=24 Score=28.25 Aligned_cols=10 Identities=50% Similarity=1.401 Sum_probs=7.9
Q ss_pred eccCCCCCCc
Q 006756 41 RCPFCSGKKK 50 (632)
Q Consensus 41 ~CP~C~gkkK 50 (632)
.||||.|...
T Consensus 3 PCPfCGg~~~ 12 (53)
T TIGR03655 3 PCPFCGGADV 12 (53)
T ss_pred CCCCCCCcce
Confidence 6999987654
No 220
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=29.21 E-value=7.8e+02 Score=26.84 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=16.5
Q ss_pred hhhHHHHHHHhhhhhHHHHhHHHHHHHH
Q 006756 266 NEDLSELQCKFNETTMSLSRMLEEKDRL 293 (632)
Q Consensus 266 nk~l~elE~k~ne~t~sL~r~meEk~~l 293 (632)
...|.++|+||...-++...+=.||..|
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l 110 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSAL 110 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHH
Confidence 3456677777776655555554454444
No 221
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=29.09 E-value=67 Score=25.53 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=18.7
Q ss_pred hhhhHHHHhHHHH---HHHHHHHHHHH
Q 006756 277 NETTMSLSRMLEE---KDRLHYAFVEE 300 (632)
Q Consensus 277 ne~t~sL~r~meE---k~~lh~~yneE 300 (632)
+..|-|++++|+| |+.+..+||++
T Consensus 4 D~iT~SM~~ai~eT~rRR~~Q~~yN~~ 30 (44)
T PF12344_consen 4 DKITDSMQKAIDETNRRREIQIAYNKE 30 (44)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999988 77889999987
No 222
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=28.98 E-value=4.3e+02 Score=23.77 Aligned_cols=89 Identities=20% Similarity=0.246 Sum_probs=52.3
Q ss_pred HHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 006756 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKK 331 (632)
Q Consensus 252 ~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~ 331 (632)
.+...++..++.....+++-||.....++..-..|- +.-.=+..+.+.+.........+.+. |++-+.--.+||.--.
T Consensus 6 ~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~-~~~~~l~~~~~~l~~k~~~l~~~l~~-Id~Ie~~V~~LE~~v~ 83 (99)
T PF10046_consen 6 SKVSKYVESELEATNEDYNLLENMNKATSLKYKKMK-DIAAGLEKNLEDLNQKYEELQPYLQQ-IDQIEEQVTELEQTVY 83 (99)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344555666666666666666666555554444332 22222233333444444444455554 4556666678999999
Q ss_pred hHHHHHHHHHH
Q 006756 332 KLDSWSKQLNK 342 (632)
Q Consensus 332 eld~r~k~L~k 342 (632)
+||.++++|+.
T Consensus 84 ~LD~ysk~LE~ 94 (99)
T PF10046_consen 84 ELDEYSKELES 94 (99)
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 223
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=28.97 E-value=4.9e+02 Score=24.42 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=17.4
Q ss_pred HhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 006756 321 KLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQ 359 (632)
Q Consensus 321 kl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~ 359 (632)
.++.++..-..+.+.-...|+..++.-+.++..|+.++.
T Consensus 70 ~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~ 108 (132)
T PF07926_consen 70 ELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELS 108 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333333344444444444444444455555554433
No 224
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=28.72 E-value=3.4e+02 Score=27.52 Aligned_cols=55 Identities=22% Similarity=0.408 Sum_probs=33.6
Q ss_pred HHHHHHhhHHHHHHHhhccHH------HHHHHHHHHHhhhhccCCcccccccccCC---CCChhhHHHHhh
Q 006756 456 LDEMESLNKTLIAKERQSNDE------LQEARRELIQGLSDLIGARTNIGVKRLGE---IDPKPFQDACKN 517 (632)
Q Consensus 456 l~~~e~~nq~L~~ker~sndE------Lq~aRk~lI~~l~~~~~~~~~IgiKrmGe---ld~kpf~~ac~~ 517 (632)
|..+++|..+|..-.-.++.+ ++-.++.|++.|.. -||+.+|. .=.--||.|+..
T Consensus 93 LpviDnlerAl~~~~~~~d~~~~l~~Gvem~~~~l~~~L~k-------~Gv~~i~~~Ge~FDP~~HeAv~~ 156 (193)
T COG0576 93 LPVIDNLERALEAAEDDKDPEKALLEGVEMTLDQLLDALEK-------LGVEEIGPEGEKFDPNLHEAVQR 156 (193)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH-------CCCEEeCCCCCCCCHHHhhheee
Confidence 677788888887755555544 66666666666664 46666654 222235666544
No 225
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=28.71 E-value=3.3e+02 Score=28.85 Aligned_cols=64 Identities=25% Similarity=0.280 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHH
Q 006756 386 VEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDEL 449 (632)
Q Consensus 386 ve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l 449 (632)
.++-..||+++++.+-+||-++.+-|.-=-+++-=+.+|+-|-..--++-.+++++.++|...+
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 3444578999999999999888877753222222233444333332234566677776666554
No 226
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.63 E-value=4.2e+02 Score=30.35 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhhccCC--------cccccccccCCC
Q 006756 435 DAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGA--------RTNIGVKRLGEI 506 (632)
Q Consensus 435 d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~~~~~~--------~~~IgiKrmGel 506 (632)
.+.++..+..|.++|++.+..+. +++.....++..|..+... ..|+=|++-|+.
T Consensus 70 ~~~l~~e~~~l~~~l~~~e~~~~------------------~~~~~l~~~ll~ipNi~~~~VPvg~de~~n~~vr~~g~~ 131 (429)
T COG0172 70 AEELIAEVKELKEKLKELEAALD------------------ELEAELDTLLLTIPNIPHESVPVGKDEDDNVEVRRWGEP 131 (429)
T ss_pred HHHHHHHHHHHHHHHHhccHHHH------------------HHHHHHHHHHHhCCCCCccccCcCCCcccceEEEEEecC
Confidence 46677778888888877777664 5555555666677766543 445558898987
Q ss_pred C
Q 006756 507 D 507 (632)
Q Consensus 507 d 507 (632)
.
T Consensus 132 ~ 132 (429)
T COG0172 132 P 132 (429)
T ss_pred c
Confidence 3
No 227
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=28.43 E-value=1.3e+02 Score=32.18 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhh-hhhhHHHhhhhHHHHhhc
Q 006756 389 QKVEKEEALSKILQLEKQLDAKQK-LEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 389 hkrEke~~~~kil~LekqL~~kQ~-LELEi~qLkG~L~VmKh~ 430 (632)
=+.|.+++..++.+|..++..... |+.|.++|+..|......
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~~ 113 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLSS 113 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 357888899999999777776655 999999999999887654
No 228
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=28.17 E-value=1.1e+02 Score=33.94 Aligned_cols=30 Identities=17% Similarity=0.413 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHhhHH
Q 006756 436 AAVQKKMKEMNDELESKIDDLDEMESLNKT 465 (632)
Q Consensus 436 ~~~~~k~~~l~~~l~ek~~el~~~e~~nq~ 465 (632)
..+..+|+++.+.+.+.++.++.++.-.+.
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~ 169 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKE 169 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHH
Confidence 345667777777776666666655444333
No 229
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=28.05 E-value=20 Score=43.80 Aligned_cols=109 Identities=25% Similarity=0.255 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhHHHhhhhhHHHHH----------HHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Q 006756 250 SKIHVVAHLASKIDMKNEDLSELQ----------CKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDN-------V 312 (632)
Q Consensus 250 k~~~lv~~L~n~I~~knk~l~elE----------~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~-------~ 312 (632)
+..+.-..|...++.-...|.+.- .+...-..+|++.+++-..-|++--.+|++=+..+-.. .
T Consensus 64 kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~l 143 (859)
T PF01576_consen 64 KAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQL 143 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444555555555554444433221 12222234666677665555655555665555444333 3
Q ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHH
Q 006756 313 RRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADR 358 (632)
Q Consensus 313 ~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek 358 (632)
++.-..-+|-+..|+....+|......+.+--+.++.-+++|+...
T Consensus 144 qk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL 189 (859)
T PF01576_consen 144 QKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQL 189 (859)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Confidence 3333344444444545555555555555554455555555555443
No 230
>PRK01156 chromosome segregation protein; Provisional
Probab=28.03 E-value=1.2e+03 Score=28.53 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=21.4
Q ss_pred HHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHh
Q 006756 251 KIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSR 285 (632)
Q Consensus 251 ~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r 285 (632)
.+.++.++...|......+.+++.........+.+
T Consensus 467 ~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~ 501 (895)
T PRK01156 467 SNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVD 501 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777776666666655544444443
No 231
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=28.02 E-value=4e+02 Score=28.39 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=12.6
Q ss_pred CCceeeeeeecCCCC
Q 006756 208 GLRIYGWFARADDNT 222 (632)
Q Consensus 208 ~~~LYGWvAradDy~ 222 (632)
++.+||++++-+|-.
T Consensus 140 ~G~~yG~ll~~~~ng 154 (289)
T COG4985 140 GGQLYGKLLRFDSNG 154 (289)
T ss_pred CcchhhheeeeccCC
Confidence 679999999987754
No 232
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=27.88 E-value=69 Score=31.96 Aligned_cols=11 Identities=27% Similarity=0.667 Sum_probs=9.2
Q ss_pred HHHHHHHhhhh
Q 006756 269 LSELQCKFNET 279 (632)
Q Consensus 269 l~elE~k~ne~ 279 (632)
|+++|.|||..
T Consensus 2 LeD~EsklN~A 12 (166)
T PF04880_consen 2 LEDFESKLNQA 12 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67899999876
No 233
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=27.73 E-value=1.3e+03 Score=28.93 Aligned_cols=31 Identities=35% Similarity=0.445 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006756 378 ADENVLRLVEEQKVEKEEALSKILQLEKQLD 408 (632)
Q Consensus 378 ade~vlkLve~hkrEke~~~~kil~LekqL~ 408 (632)
+|-=.-+-+++..+|+.++..++..++|.+|
T Consensus 664 ~d~i~~~q~eel~Ke~kElq~rL~~q~KkiD 694 (988)
T KOG2072|consen 664 ADQIKARQIEELEKERKELQSRLQYQEKKID 694 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333344566667777777777777777665
No 234
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=27.70 E-value=6.4e+02 Score=30.30 Aligned_cols=77 Identities=17% Similarity=0.272 Sum_probs=62.5
Q ss_pred HHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 244 VQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE------KDRLHYAFVEETRKMQRLARDNVRRILE 317 (632)
Q Consensus 244 ~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE------k~~lh~~yneE~~kmQ~~ar~~~~rI~~ 317 (632)
.....++-.+-|+-|...|....+.++.+|.......+++.+|..+ |.-|+++|+.-.+.-+..++++.+||=.
T Consensus 77 ~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~ 156 (632)
T PF14817_consen 77 EARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQG 156 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456677899999999999999999999999999999999876 4578999999998888888888887644
Q ss_pred HHH
Q 006756 318 EQE 320 (632)
Q Consensus 318 e~e 320 (632)
--+
T Consensus 157 ~~~ 159 (632)
T PF14817_consen 157 QVE 159 (632)
T ss_pred HHH
Confidence 443
No 235
>PTZ00332 paraflagellar rod protein; Provisional
Probab=27.65 E-value=1.1e+03 Score=27.91 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=65.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHh
Q 006756 283 LSRMLEEKDRLHYAFVEETRKMQRLA-----------------RDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREA 345 (632)
Q Consensus 283 L~r~meEk~~lh~~yneE~~kmQ~~a-----------------r~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a 345 (632)
..-|.+-|..+.+++.+.+.++|..- +..+.+.|++|+.-..+-=.++.+|+.+-..|.
T Consensus 262 ~sa~~daK~R~~~~CE~Dl~~i~d~iq~~~~eDa~~~KRy~a~k~~Se~f~~~N~e~Qe~~wnrI~eLer~Lq~l~---- 337 (589)
T PTZ00332 262 TSQMKDAKRRLKQRCETDLKHIHDAIQKADLEDAEAMKRYATNKEKSERFIRENEDRQEEAWNKIQDLERQLQRLG---- 337 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34455667777888887777777543 334667777777666666666666665444444
Q ss_pred hhHHHHHhhHHHHHhhhhhhchhHhhHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhh
Q 006756 346 LTERERQKLDADRQQNDLRNNSLQLASMEQKK--ADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGK 423 (632)
Q Consensus 346 ~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~k--ade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~ 423 (632)
.+|.+.-+. -|++..-|.++ +-+..+..+..|+ |.|++-|.-.-+-
T Consensus 338 ---~eR~~eV~r---------RIe~~~rEekRr~~yeqFl~~asQHk--------------------qrL~~tv~Ncd~a 385 (589)
T PTZ00332 338 ---TERFEEVKR---------RIEENDREEKRRVEYQQFLEVAGQHK--------------------KLLELTVYNCDLA 385 (589)
T ss_pred ---HHHHHHHHH---------HHHHHHHHHHhHhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHH
Confidence 233222111 12222333332 3344555555554 6889998888888
Q ss_pred HHHHhhcC
Q 006756 424 LEVMKHLG 431 (632)
Q Consensus 424 L~VmKh~~ 431 (632)
+.+.-.|+
T Consensus 386 ~~~~~~le 393 (589)
T PTZ00332 386 LRCTGLVE 393 (589)
T ss_pred HHHHHHHH
Confidence 87776653
No 236
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=27.63 E-value=1.3e+03 Score=28.97 Aligned_cols=29 Identities=31% Similarity=0.336 Sum_probs=19.5
Q ss_pred HHHHHHhhHHhhhhhhHHHhh-hhHHHHhh
Q 006756 401 LQLEKQLDAKQKLEMEIEDLK-GKLEVMKH 429 (632)
Q Consensus 401 l~LekqL~~kQ~LELEi~qLk-G~L~VmKh 429 (632)
-+||.-..++|.|+.+|-|.+ |.|+..+-
T Consensus 1016 Ke~eaiineiee~eaeIiQekE~el~e~ef 1045 (1424)
T KOG4572|consen 1016 KELEAIINEIEELEAEIIQEKEGELIEDEF 1045 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHh
Confidence 345555677888998888876 55555443
No 237
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.50 E-value=6.9e+02 Score=25.64 Aligned_cols=115 Identities=17% Similarity=0.119 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhh-HHHHHhhhhhhchhHhhHHHHHhhhHHHHHH
Q 006756 307 LARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKL-DADRQQNDLRNNSLQLASMEQKKADENVLRL 385 (632)
Q Consensus 307 ~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL-~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkL 385 (632)
....+..++-.....+-..|+.-++..+.+|++++........-+... ..+.+|. ..-+..|...-.+++.+....
T Consensus 103 ~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~---~~K~~k~~~~~~~a~~~Y~~~ 179 (239)
T cd07647 103 KTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKL---KKKAAQCKTSAEEADSAYKSS 179 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555556777777888888888875432211111000 1111221 223445556666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhhh-HHHhhhhHHHH
Q 006756 386 VEEQKVEKEEALSKILQLEKQLDAKQKLEME-IEDLKGKLEVM 427 (632)
Q Consensus 386 ve~hkrEke~~~~kil~LekqL~~kQ~LELE-i~qLkG~L~Vm 427 (632)
|+...+=.......+... ++.=|.||-+ |..|+..|.+=
T Consensus 180 v~~l~~~~~~~~~~~~~~---~~~~Q~lEe~Ri~~lk~~l~~y 219 (239)
T cd07647 180 IGCLEDARVEWESEHATA---CQVFQNMEEERIKFLRNALWVH 219 (239)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 666654444433333332 2222555443 56666666543
No 238
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=27.36 E-value=1.4e+03 Score=29.33 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhh-hhhchhHhhHHHHHhhhHHHHHHHH
Q 006756 309 RDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQND-LRNNSLQLASMEQKKADENVLRLVE 387 (632)
Q Consensus 309 r~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~-~~~~~l~lA~~EQ~kade~vlkLve 387 (632)
-..+++-++.|.+|..+|...-.+++.-..+-..-..+.+.-++.+..-+++-. .+.+.+=--++-||++.---....+
T Consensus 257 ~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~LP~~~~~~ 336 (1109)
T PRK10929 257 PKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALRAQVARLPEMPKPQ 336 (1109)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhCCCCcccc
Confidence 445777788899999999888888777666666555555555555543333322 2222222233444433322233333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhh
Q 006756 388 EQKVEKEEALSKILQLEKQLDAKQK 412 (632)
Q Consensus 388 ~hkrEke~~~~kil~LekqL~~kQ~ 412 (632)
.-..+.-++.-+..++++|+|+-+.
T Consensus 337 ~l~~~IAdlRl~~f~~~q~~~~l~~ 361 (1109)
T PRK10929 337 QLDTEMAQLRVQRLRYEDLLNKQPQ 361 (1109)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344555566666777777776554
No 239
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=27.30 E-value=4.8e+02 Score=23.72 Aligned_cols=27 Identities=37% Similarity=0.494 Sum_probs=18.2
Q ss_pred HHHHhhHHhhhhhhHHHhhhhHHHHhh
Q 006756 403 LEKQLDAKQKLEMEIEDLKGKLEVMKH 429 (632)
Q Consensus 403 LekqL~~kQ~LELEi~qLkG~L~VmKh 429 (632)
.+.+-..++..+.||.+|+..|..|+.
T Consensus 69 a~~e~k~~~~k~~ei~~l~~~l~~l~~ 95 (126)
T PF13863_consen 69 AEEEKKKKEEKEAEIKKLKAELEELKS 95 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566777788888888776655
No 240
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=27.09 E-value=25 Score=30.85 Aligned_cols=11 Identities=36% Similarity=1.210 Sum_probs=4.5
Q ss_pred cCCeeeccCCC
Q 006756 36 VNGTLRCPFCS 46 (632)
Q Consensus 36 ~~~~~~CP~C~ 46 (632)
...+|.||||.
T Consensus 19 l~~~F~CPfC~ 29 (81)
T PF05129_consen 19 LPKVFDCPFCN 29 (81)
T ss_dssp -SS----TTT-
T ss_pred CCceEcCCcCC
Confidence 56899999997
No 241
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=26.95 E-value=1.2e+03 Score=28.15 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q 006756 435 DAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDL 491 (632)
Q Consensus 435 d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~~~ 491 (632)
-+..+..|..|..+|..+..+++.|...=+. -....+.+++| +.|..|
T Consensus 312 ~e~~~~qI~~le~~l~~~~~~leel~~kL~~--------~sDYeeIK~EL-siLk~i 359 (629)
T KOG0963|consen 312 REKHKAQISALEKELKAKISELEELKEKLNS--------RSDYEEIKKEL-SILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccHHHHHHHH-HHHHHh
Confidence 3455677888888888888888766432221 14567777776 445544
No 242
>PF03804 DUF325: Viral domain of unknown function; InterPro: IPR003225 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.94 E-value=39 Score=29.00 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.8
Q ss_pred cccccccccCCCCChhhHHHHhh
Q 006756 495 RTNIGVKRLGEIDPKPFQDACKN 517 (632)
Q Consensus 495 ~~~IgiKrmGeld~kpf~~ac~~ 517 (632)
-++--|.|.|-+|-..|+.||+.
T Consensus 33 vt~~dV~RFgf~dRnalv~ACM~ 55 (71)
T PF03804_consen 33 VTHADVRRFGFLDRNALVSACMA 55 (71)
T ss_pred ccHhHHHHhCCCcHHHHHHHHHh
Confidence 56678999999999999999986
No 243
>PHA02540 61 DNA primase; Provisional
Probab=26.73 E-value=34 Score=37.57 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=33.8
Q ss_pred eeeccCCCCCCcC----ccCchhH----HhhhccCCCCCCCcChHHHHhHHHHHHHHHHhcCCCC
Q 006756 39 TLRCPFCSGKKKQ----DYKHKDL----LQHASGVGKGSANRSAKQKANHLALAKYLEVDLAGGV 95 (632)
Q Consensus 39 ~~~CP~C~gkkK~----dy~~~~L----LqHA~gvG~sss~r~~k~ka~H~aLak~Le~dl~~~~ 95 (632)
.++||||..+.++ .+.+.+= +=|-.|-|.+-.-=+--....|+.+-.||+......+
T Consensus 27 ~~~CPf~~ds~~~~~kpsF~V~p~k~~~~yhCFgCGa~Gd~i~Flme~e~lsf~Eav~~la~~~g 91 (337)
T PHA02540 27 NFRCPICGDSQKDKNKARGWIYEKKDGGVFKCHNCGYHRPFGNFLKDYEPDLYREYIMERFKERG 91 (337)
T ss_pred EecCCCCCCccccCcCCcEEEeccCCceEEEecCCCCCCCHHHHHHHhcCCChHHHHHHHHHHhC
Confidence 6899999976543 3334333 3377776655221112345566777778887766655
No 244
>PRK10698 phage shock protein PspA; Provisional
Probab=26.69 E-value=7.2e+02 Score=25.60 Aligned_cols=155 Identities=14% Similarity=0.206 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhch
Q 006756 288 EEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNS 367 (632)
Q Consensus 288 eEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~ 367 (632)
|+=.+++..|-.||+.--..++..+.+++-....+..+++.-....+.|..+-..--... +..
T Consensus 23 EDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G-----------------~Ed 85 (222)
T PRK10698 23 EDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKE-----------------KED 85 (222)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------CHH
Confidence 356678888889998888888899999998888888887777666666655443111111 111
Q ss_pred hHhhHHHHHhh-hHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhH----HhhhhhhHHHhhhhHHHHhhcCCCCcHHHH
Q 006756 368 LQLASMEQKKA-DENVLR---LVEEQKVEKEEALSKILQLEKQLDA----KQKLEMEIEDLKGKLEVMKHLGDEDDAAVQ 439 (632)
Q Consensus 368 l~lA~~EQ~ka-de~vlk---Lve~hkrEke~~~~kil~LekqL~~----kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~ 439 (632)
|--.++..++. .+.+-. .++.+...-+.+-..+.+|+.++.. +..|-.-.+.-+.+.+|=+-|.+.+.....
T Consensus 86 LAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~ 165 (222)
T PRK10698 86 LARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAM 165 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHH
Confidence 22222222211 111111 2222333334444555555554432 112222222233444555556555555556
Q ss_pred HHHHHHHHHHHhHHhhHHHH
Q 006756 440 KKMKEMNDELESKIDDLDEM 459 (632)
Q Consensus 440 ~k~~~l~~~l~ek~~el~~~ 459 (632)
..++.+.+.+.+.+.+-+.+
T Consensus 166 ~~f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 166 ARFESFERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHHHHHHHhHh
Confidence 67777777776666666544
No 245
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=26.37 E-value=1.1e+03 Score=27.68 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=58.0
Q ss_pred HHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHH---HHH-HHH---HHHHHHHHHHHHHHHHHHHH
Q 006756 241 SDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRML---EEK-DRL---HYAFVEETRKMQRLARDNVR 313 (632)
Q Consensus 241 ~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~m---eEk-~~l---h~~yneE~~kmQ~~ar~~~~ 313 (632)
+..++|-.+--++++..+.++|+.+......|+.++.+. ++++... ++| +.| ...|.-=+..|.++.++..-
T Consensus 252 ~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea-~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g 330 (622)
T COG5185 252 EPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEA-MKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPG 330 (622)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcch
Confidence 345566777889999999999999999999998888765 3333222 222 112 11233334455565555543
Q ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Q 006756 314 RILEEQEKLSCELETKKKKLDSWSKQLNKR 343 (632)
Q Consensus 314 rI~~e~ekl~~eLe~k~~eld~r~k~L~k~ 343 (632)
. .++|+.+++-+-.+|.+-..+.+.+
T Consensus 331 ~----l~kl~~eie~kEeei~~L~~~~d~L 356 (622)
T COG5185 331 K----LEKLKSEIELKEEEIKALQSNIDEL 356 (622)
T ss_pred H----HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3 3566666665555555444444433
No 246
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=26.25 E-value=7.2e+02 Score=29.83 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=7.9
Q ss_pred HHHHHHHHHhHHhhHHH
Q 006756 442 MKEMNDELESKIDDLDE 458 (632)
Q Consensus 442 ~~~l~~~l~ek~~el~~ 458 (632)
+..|+.++...+-.+..
T Consensus 608 ~~~l~~~~~~~ekr~~R 624 (722)
T PF05557_consen 608 IAELKAELASAEKRNQR 624 (722)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555444444433
No 247
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=26.12 E-value=6.8e+02 Score=25.38 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=7.3
Q ss_pred hhhhHHHhhhhHHHHhh
Q 006756 413 LEMEIEDLKGKLEVMKH 429 (632)
Q Consensus 413 LELEi~qLkG~L~VmKh 429 (632)
||..|.+|+.+.++|+.
T Consensus 136 Le~ki~el~~~~~~~~~ 152 (190)
T PF05266_consen 136 LEMKILELQRQAAKLKE 152 (190)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 248
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=26.11 E-value=7.8e+02 Score=25.81 Aligned_cols=168 Identities=20% Similarity=0.398 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhH
Q 006756 290 KDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQ 369 (632)
Q Consensus 290 k~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~ 369 (632)
...+...|..||+.+++ .+..+..++-++..++++-..+++.-...++.. -..|..++.+...
T Consensus 45 ~~~~~~~ye~el~~lr~----~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e----~~~~~~le~el~~--------- 107 (312)
T PF00038_consen 45 VSRIKEMYEEELRELRR----QIDDLSKEKARLELEIDNLKEELEDLRRKYEEE----LAERKDLEEELES--------- 107 (312)
T ss_dssp -HHHHHHHHHHHHCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH---------
T ss_pred CcccccchhhHHHHhHH----hhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHhh---------
Confidence 34567888888876543 444455555556555555555554443333322 1122233322221
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-hhhhhHHHhhhhHH--HHhhcCCCCcHHHHHHHHHHH
Q 006756 370 LASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQ-KLEMEIEDLKGKLE--VMKHLGDEDDAAVQKKMKEMN 446 (632)
Q Consensus 370 lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ-~LELEi~qLkG~L~--VmKh~~~~~d~~~~~k~~~l~ 446 (632)
+-+-++......-.+.++|..|+.+|+-.. --+-||..|+.++. +--.+.+.-..++-..|.+++
T Consensus 108 ------------lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR 175 (312)
T PF00038_consen 108 ------------LRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIR 175 (312)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHH
T ss_pred ------------hhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHH
Confidence 113445555566667778888888887654 45677999999886 111111111345556666666
Q ss_pred HHHHhHHhhH-HHHHHhhHH----HHHHHhhccHHHHHHHHHHHH
Q 006756 447 DELESKIDDL-DEMESLNKT----LIAKERQSNDELQEARRELIQ 486 (632)
Q Consensus 447 ~~l~ek~~el-~~~e~~nq~----L~~ker~sndELq~aRk~lI~ 486 (632)
.+.+...... .+++...+. |...-..++.++..++.++..
T Consensus 176 ~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~ 220 (312)
T PF00038_consen 176 AQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKE 220 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHH
Confidence 5554333221 233333332 333344566777777777644
No 249
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=26.03 E-value=6.5e+02 Score=29.64 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=25.1
Q ss_pred HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHH
Q 006756 409 AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKK 441 (632)
Q Consensus 409 ~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k 441 (632)
.++.|+-..++++..+.-+|.++.+|-.-+..+
T Consensus 238 ~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~ 270 (555)
T TIGR03545 238 AKNDLQNDKKQLKADLAELKKAPQNDLKRLENK 270 (555)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHH
Confidence 466788889999999999999987654444433
No 250
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.99 E-value=2.8e+02 Score=25.37 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=30.0
Q ss_pred HhhcCCCCc-HHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHH
Q 006756 427 MKHLGDEDD-AAVQKKMKEMNDELESKIDDLDEMESLNKTLIA 468 (632)
Q Consensus 427 mKh~~~~~d-~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ 468 (632)
++|||+.+| ..+.-.|.+++-++..-...++.++....-|+-
T Consensus 58 l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 58 LEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 457877655 666677777777777777777777777666664
No 251
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=25.87 E-value=36 Score=27.83 Aligned_cols=11 Identities=36% Similarity=1.068 Sum_probs=9.2
Q ss_pred cCCeeeccCCC
Q 006756 36 VNGTLRCPFCS 46 (632)
Q Consensus 36 ~~~~~~CP~C~ 46 (632)
..-+|+||+|.
T Consensus 41 ~~i~y~C~~Cg 51 (54)
T PF10058_consen 41 EEIQYRCPYCG 51 (54)
T ss_pred CceEEEcCCCC
Confidence 55599999996
No 252
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=25.53 E-value=1.2e+03 Score=27.66 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=7.0
Q ss_pred ccCCceeeeeccCCC
Q 006756 150 VFKPVEVRIFWNEEN 164 (632)
Q Consensus 150 ~F~p~kv~~l~~~~G 164 (632)
.+-|..+.+++.++|
T Consensus 141 ~ilp~~~~~~FfFDG 155 (650)
T TIGR03185 141 ELLPLELADLFFFDG 155 (650)
T ss_pred HhCCHhHHHHhcccH
Confidence 344444444444443
No 253
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=25.52 E-value=1.6e+03 Score=29.36 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=37.9
Q ss_pred HHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhH
Q 006756 261 KIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRK---MQRLARDNVRRILEEQEKLSC 324 (632)
Q Consensus 261 ~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~k---mQ~~ar~~~~rI~~e~ekl~~ 324 (632)
.|...+..+..+-++..+....+...-.+.+...++|.+++.+ -+..|.+....|..-+..|+.
T Consensus 886 ~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~ 952 (1294)
T KOG0962|consen 886 DIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQ 952 (1294)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444445567788888888877 577777777777666655543
No 254
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=25.50 E-value=1.1e+02 Score=32.11 Aligned_cols=47 Identities=6% Similarity=0.107 Sum_probs=34.5
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC-CC-CcceEEEEeCCC
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE-EN-PTAQAVVKFNND 176 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~-~G-h~G~aIV~F~~d 176 (632)
.+.|-|+|.. .+..+|++ |+.|.|+ .|+.+.++ .| +.||+.|.|.+.
T Consensus 5 ~l~V~nLp~~--------~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~ 55 (352)
T TIGR01661 5 NLIVNYLPQT--------MTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRP 55 (352)
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcH
Confidence 3567888753 36788999 9999985 56666554 23 779999999764
No 255
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=25.49 E-value=3.9e+02 Score=30.62 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH
Q 006756 236 KLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE 289 (632)
Q Consensus 236 dLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE 289 (632)
|.+.+-++++.+.-+..--+..|+.+-...|+|++-|+++|...+.-|.+-=.|
T Consensus 108 Di~~~l~gvnSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQE 161 (558)
T PF15358_consen 108 DITELLEGVNSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQE 161 (558)
T ss_pred cHHHHHhhhcccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhH
Confidence 555556666666655555678899999999999999999999988777654433
No 256
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.49 E-value=1.5e+03 Score=29.03 Aligned_cols=74 Identities=24% Similarity=0.342 Sum_probs=43.4
Q ss_pred hHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHH
Q 006756 408 DAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELI 485 (632)
Q Consensus 408 ~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI 485 (632)
.-.+.||-.|.+|++.+ +.-- .--..+.-+|.+++..+.+...++..++...-.+.-+.-.-|+||++.+.+|-
T Consensus 402 ~~~~elE~r~k~l~~sv--er~~--~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~ 475 (1141)
T KOG0018|consen 402 ERRAELEARIKQLKESV--ERLD--KRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLL 475 (1141)
T ss_pred HHHHHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 33555666666666555 1110 01123445566666777777777777777666666666777777777665543
No 257
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=25.35 E-value=1.1e+03 Score=27.23 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=43.9
Q ss_pred hhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHH
Q 006756 413 LEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAK 469 (632)
Q Consensus 413 LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~k 469 (632)
-+-||+.|+-+|.+--+... -.|+-+.+..|.+-|-.|-..|+.+-.-+.+|.+.
T Consensus 367 ke~E~q~lr~~l~~~~~~s~--~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lq 421 (511)
T PF09787_consen 367 KESEIQKLRNQLSARASSSS--WNELESRLTQLTESLIQKQTQLESLGSEKNALRLQ 421 (511)
T ss_pred HHHHHHHHHHHHHHHhccCC--cHhHHHHHhhccHHHHHHHHHHHHHHhhhhhcccc
Confidence 37888999888877554433 45788899999999999999999888888888864
No 258
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=25.27 E-value=5.1e+02 Score=23.39 Aligned_cols=55 Identities=25% Similarity=0.263 Sum_probs=30.2
Q ss_pred hhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHH
Q 006756 267 EDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDN--VRRILEEQEKLSCE 325 (632)
Q Consensus 267 k~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~--~~rI~~e~ekl~~e 325 (632)
.++.-||......-.+..-+++++ .+-.+||+=+|...-.| +-|.--||-+|+.+
T Consensus 3 dkI~rLE~~~~g~l~~~~~~~~e~----~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee 59 (86)
T PF12711_consen 3 DKIKRLEKLLDGKLPSESYLEEEN----EALKEEIQLLREQVEHNPEVTRFAMENIRLREE 59 (86)
T ss_pred hHHHHHHHHhcCCCCccchhHHHH----HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666 44456666666554444 33333444444433
No 259
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=25.14 E-value=35 Score=22.94 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=16.3
Q ss_pred eeeccCCCCCCcCccCchhHHhhhc
Q 006756 39 TLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 39 ~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
.|.|+.|... +-.+..|+.|-.
T Consensus 1 ~~~C~~C~~~---F~~~~~l~~H~~ 22 (27)
T PF13912_consen 1 PFECDECGKT---FSSLSALREHKR 22 (27)
T ss_dssp SEEETTTTEE---ESSHHHHHHHHC
T ss_pred CCCCCccCCc---cCChhHHHHHhH
Confidence 4899999733 456888999953
No 260
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=25.11 E-value=1.4e+03 Score=28.28 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=61.5
Q ss_pred CCCHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHh---hhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 237 LRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKF---NETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVR 313 (632)
Q Consensus 237 LKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~---ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~ 313 (632)
-++|.+||..+..-....|+.|--.-+....-..+.|+.- -+.|.-|+..+.+....+.+|.+++.|--..|+--.-
T Consensus 412 rr~v~~mv~~grk~~~~~~~e~~ar~~~l~~v~re~eeer~aalias~~l~ea~~~irlqy~~~~~~l~k~~~~a~gvld 491 (828)
T PF04094_consen 412 RRAVDAMVEVGRKAHQAHLAEIQAREETLDSVMRETEEERQAALIASSVLDEALGDIRLQYEAHAEDLAKRVDDARGVLD 491 (828)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHhhhhhhh
Confidence 3567777766655444455554433333333333333322 2345556666666778899999999877665553322
Q ss_pred HHHHHHHHhhHHHH----HHHhhHHHHHHHHHHHHhhhH
Q 006756 314 RILEEQEKLSCELE----TKKKKLDSWSKQLNKREALTE 348 (632)
Q Consensus 314 rI~~e~ekl~~eLe----~k~~eld~r~k~L~k~~a~~~ 348 (632)
... -++.--.+.+ ..+..|+.+.+.|+++++.-+
T Consensus 492 aaa-arErrAsE~eas~r~R~~ALEara~ALeERAr~~e 529 (828)
T PF04094_consen 492 AAA-ARERRASEAEASLRAREEALEARAKALEERARAAE 529 (828)
T ss_pred hhh-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 1222223333 455568888888887765444
No 261
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=25.04 E-value=36 Score=22.47 Aligned_cols=19 Identities=32% Similarity=0.716 Sum_probs=10.0
Q ss_pred eeccCCCCCCcCccCchhHHhhh
Q 006756 40 LRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 40 ~~CP~C~gkkK~dy~~~~LLqHA 62 (632)
|+||+|+=. .....|..|-
T Consensus 1 y~C~~C~y~----t~~~~l~~H~ 19 (24)
T PF13909_consen 1 YKCPHCSYS----TSKSNLKRHL 19 (24)
T ss_dssp EE-SSSS-E----ESHHHHHHHH
T ss_pred CCCCCCCCc----CCHHHHHHHH
Confidence 789999721 1234566663
No 262
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=24.89 E-value=1e+03 Score=26.84 Aligned_cols=55 Identities=33% Similarity=0.434 Sum_probs=28.1
Q ss_pred HhhHHHHHhhhHHHHHHHHHHHH----HHHHHHHH------HHHHHHHhhHHhhhhhhHHHhhhhHHH
Q 006756 369 QLASMEQKKADENVLRLVEEQKV----EKEEALSK------ILQLEKQLDAKQKLEMEIEDLKGKLEV 426 (632)
Q Consensus 369 ~lA~~EQ~kade~vlkLve~hkr----Eke~~~~k------il~LekqL~~kQ~LELEi~qLkG~L~V 426 (632)
..|..+-+||.+=+|+|-.+.-| +-+.+-.+ -.|.||++. .+..|.++|+..|+-
T Consensus 199 ~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~---EfdiEre~LRAel~r 263 (561)
T KOG1103|consen 199 LKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIE---EFDIEREFLRAELER 263 (561)
T ss_pred HHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34566667788777777555422 22222221 223333332 345566667666653
No 263
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.60 E-value=6.3e+02 Score=24.22 Aligned_cols=95 Identities=15% Similarity=0.247 Sum_probs=54.7
Q ss_pred CHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 239 TVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEE 318 (632)
Q Consensus 239 Ti~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e 318 (632)
++||++---.|-...-++.+..+++.-..-|......+...-..|..-+++-..+.+.-.+|+-.++... .++...++.
T Consensus 29 s~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv-~~i~~dv~~ 107 (126)
T PF07889_consen 29 SFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDV-SQIGDDVDS 107 (126)
T ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHH
Confidence 5677776666666666677776666666666555555555555666666666667777777766555432 122223333
Q ss_pred HHHhhHHHHHHHhhHH
Q 006756 319 QEKLSCELETKKKKLD 334 (632)
Q Consensus 319 ~ekl~~eLe~k~~eld 334 (632)
-...=..|+.|+.+|+
T Consensus 108 v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 108 VQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333345555555544
No 264
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=24.46 E-value=9.5e+02 Score=26.24 Aligned_cols=104 Identities=22% Similarity=0.359 Sum_probs=54.5
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHH---
Q 006756 322 LSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALS--- 398 (632)
Q Consensus 322 l~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~--- 398 (632)
|-.+|+--++|=.-|-=+|+-++|--.-.++|.+.++-+- |++.- -.-.++...+.-.+-++.+..
T Consensus 23 lE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~---------s~LkR--Enq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 23 LEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEY---------SALKR--ENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh---------hhhhh--hhhhHHHHHHHHHHHHHHhhHHHh
Confidence 3344444444445556667777776666666666665532 22211 122233333333333333222
Q ss_pred ----HHHHHHHHhhH----HhhhhhhHHHhhhhHHHHhhcCCCCcH
Q 006756 399 ----KILQLEKQLDA----KQKLEMEIEDLKGKLEVMKHLGDEDDA 436 (632)
Q Consensus 399 ----kil~LekqL~~----kQ~LELEi~qLkG~L~VmKh~~~~~d~ 436 (632)
.+-=||-||.. -..||-||.+++..|+=.-.-....|+
T Consensus 92 ~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~ 137 (307)
T PF10481_consen 92 VKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDV 137 (307)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 23345666643 457899999999999866554444443
No 265
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=24.45 E-value=4.6e+02 Score=22.59 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=19.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 282 SLSRMLEEKDRLHYAFVEETRKMQRLARDNV 312 (632)
Q Consensus 282 sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~ 312 (632)
||.+.+.|+|..+..--+|-.++...=..|.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~ 32 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLN 32 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4566677777777776666666655444443
No 266
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=24.40 E-value=6.2e+02 Score=28.54 Aligned_cols=55 Identities=31% Similarity=0.493 Sum_probs=36.5
Q ss_pred CcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhhccCCcc--------cccccccCC
Q 006756 434 DDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGART--------NIGVKRLGE 505 (632)
Q Consensus 434 ~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~~~~~~~~--------~IgiKrmGe 505 (632)
+..+++.++.+|.+++.+.++++. ++++.+.+++..+..++.... |+=||+.|+
T Consensus 67 ~~~~l~~~~~~l~~~~~~~~~~~~------------------~~~~~~~~~~~~iPN~~~~~vP~g~~~~~n~~i~~~g~ 128 (425)
T PRK05431 67 DAEALIAEVKELKEEIKALEAELD------------------ELEAELEELLLRIPNLPHDSVPVGKDEDDNVEVRRWGE 128 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCCCCceEEEEeCC
Confidence 345677777777777777666663 666667777777777764433 344788886
Q ss_pred C
Q 006756 506 I 506 (632)
Q Consensus 506 l 506 (632)
-
T Consensus 129 ~ 129 (425)
T PRK05431 129 P 129 (425)
T ss_pred C
Confidence 3
No 267
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.26 E-value=6.1e+02 Score=28.10 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHH
Q 006756 437 AVQKKMKEMNDELESKIDDLDEME 460 (632)
Q Consensus 437 ~~~~k~~~l~~~l~ek~~el~~~e 460 (632)
+..+.+++|++++.+...-+.+||
T Consensus 65 e~~~~i~~L~~~Ik~r~~~l~DmE 88 (330)
T PF07851_consen 65 EERELIEKLEEDIKERRCQLFDME 88 (330)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHH
Confidence 445555556666665555555555
No 268
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=24.11 E-value=1.3e+02 Score=28.53 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=43.8
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASDFE 187 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~le 187 (632)
+.++.|-|++. ..+...|.+ |..|.+. .++..+.. .-.+|++.|.|.+.-....-...+.
T Consensus 115 ~~~l~v~nL~~--------~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~ 178 (306)
T COG0724 115 NNTLFVGNLPY--------DVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN 178 (306)
T ss_pred CceEEEeCCCC--------CCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC
Confidence 68888999985 336778899 9999976 56665653 5688999999998765544444444
No 269
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.89 E-value=8e+02 Score=25.19 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=8.5
Q ss_pred hhhhhcCCCCCceeeeeee
Q 006756 199 HWIARKESPGLRIYGWFAR 217 (632)
Q Consensus 199 dW~~~~~~~~~~LYGWvAr 217 (632)
+|...+.. .+-=|||+.
T Consensus 66 ~w~~Vr~~--~G~~GWV~~ 82 (206)
T PRK10884 66 NYAQIRDS--KGRTAWIPL 82 (206)
T ss_pred CEEEEEeC--CCCEEeEEH
Confidence 56554432 122399853
No 270
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=23.57 E-value=9.7e+02 Score=26.00 Aligned_cols=98 Identities=24% Similarity=0.265 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhc
Q 006756 290 KDRLHYAFVEETRKMQRLARDN---VRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNN 366 (632)
Q Consensus 290 k~~lh~~yneE~~kmQ~~ar~~---~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~ 366 (632)
|..+...|..-|..+|...-++ ..+...+|..|+.-|.+-..-.+.|...++++-...+-+-+
T Consensus 105 R~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Q-------------- 170 (309)
T PF09728_consen 105 RKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQ-------------- 170 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------------
Confidence 4466777777777777666655 34566777777777777777777777777754433332221
Q ss_pred hhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 367 SLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLE 404 (632)
Q Consensus 367 ~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~Le 404 (632)
|..|-++| +...+-...+.+.++++.++....++.
T Consensus 171 -l~~AKl~q--~~~~~~~e~~k~~~~~~~~l~~~~~~~ 205 (309)
T PF09728_consen 171 -LAEAKLEQ--QQEEAEQEKEKAKQEKEILLEEAAQVQ 205 (309)
T ss_pred -HHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 11233443 444455566777777777777766433
No 271
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=23.56 E-value=1.6e+03 Score=28.41 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=39.9
Q ss_pred HHhhHHhhhhhhHHHhhh-hHHHHhhcCCCCcHHHH-------HHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHH
Q 006756 405 KQLDAKQKLEMEIEDLKG-KLEVMKHLGDEDDAAVQ-------KKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDE 476 (632)
Q Consensus 405 kqL~~kQ~LELEi~qLkG-~L~VmKh~~~~~d~~~~-------~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndE 476 (632)
+-.+..++|.-||+.+++ +++++..|..| ++... |-+..+..+..--..++.-++.+++.=-.--+.--.|
T Consensus 576 ~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d-~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~e 654 (913)
T KOG0244|consen 576 KSEGIRAKLLQEIHIAKGQKVQLLRVMKED-AEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEE 654 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888887 46777777532 22222 3344444444444445544444443221111222234
Q ss_pred HHHHHHHH
Q 006756 477 LQEARREL 484 (632)
Q Consensus 477 Lq~aRk~l 484 (632)
.-.|+|.|
T Consensus 655 as~~~krl 662 (913)
T KOG0244|consen 655 ASAANKRL 662 (913)
T ss_pred HHHHHHHH
Confidence 45555553
No 272
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=23.24 E-value=45 Score=22.97 Aligned_cols=20 Identities=30% Similarity=0.791 Sum_probs=15.1
Q ss_pred eeeccCCCCCCcCccCchhHHhhh
Q 006756 39 TLRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 39 ~~~CP~C~gkkK~dy~~~~LLqHA 62 (632)
...||.|.++ |....|..|.
T Consensus 2 l~~C~~CgR~----F~~~~l~~H~ 21 (25)
T PF13913_consen 2 LVPCPICGRK----FNPDRLEKHE 21 (25)
T ss_pred CCcCCCCCCE----ECHHHHHHHH
Confidence 4679999866 7777777774
No 273
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=23.15 E-value=1.7e+02 Score=31.47 Aligned_cols=44 Identities=32% Similarity=0.349 Sum_probs=33.5
Q ss_pred chhHhhHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhH
Q 006756 366 NSLQLASMEQKKADENVLRLVEEQKVEK----EEALSKILQLEKQLDA 409 (632)
Q Consensus 366 ~~l~lA~~EQ~kade~vlkLve~hkrEk----e~~~~kil~LekqL~~ 409 (632)
.+..-|+-.+.-+--.|++.||+||-|- +.+.++|.+||++--.
T Consensus 234 ~a~~ea~~kel~aL~~vikcIee~kLes~~~~~~l~kri~~Lek~~~~ 281 (290)
T PF07899_consen 234 EAQNEANEKELAALKSVIKCIEEHKLESEFPLEPLQKRIEQLEKQKAD 281 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccChHHHHHHHHHHHHHHHH
Confidence 3445566666677788999999999654 4588899999998743
No 274
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=22.87 E-value=1.9e+02 Score=21.81 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=28.3
Q ss_pred CChhhHhh-hcccCC-ceeeeeccCC-CCcceEEEEeCCChhchhhHH
Q 006756 140 DSGYWLKR-FAVFKP-VEVRIFWNEE-NPTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 140 ~s~~~L~d-~~~F~p-~kv~~l~~~~-Gh~G~aIV~F~~dw~Gf~nA~ 184 (632)
.+..+++. |+.|.+ ..+...+.+. .+.|++.|.|.+. ..-..|.
T Consensus 11 ~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~-~~a~~a~ 57 (74)
T cd00590 11 VTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDE-EDAEKAL 57 (74)
T ss_pred cCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCH-HHHHHHH
Confidence 46778888 888764 3444444433 3588999999965 3444443
No 275
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.85 E-value=8.8e+02 Score=25.25 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 292 RLHYAFVEETRKMQRLARDNVRRI 315 (632)
Q Consensus 292 ~lh~~yneE~~kmQ~~ar~~~~rI 315 (632)
.+|++|+.-.+.+.+.+|..++++
T Consensus 66 ~r~~~Y~~~vrslR~~fr~Ev~r~ 89 (227)
T KOG4691|consen 66 ERYQHYRQTVRSLRMEFRSEVQRV 89 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999983
No 276
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=22.76 E-value=35 Score=27.23 Aligned_cols=14 Identities=29% Similarity=0.733 Sum_probs=7.8
Q ss_pred CCeeeccCCCCCCc
Q 006756 37 NGTLRCPFCSGKKK 50 (632)
Q Consensus 37 ~~~~~CP~C~gkkK 50 (632)
...|+||-|...|.
T Consensus 32 p~~w~CP~C~a~K~ 45 (47)
T PF00301_consen 32 PDDWVCPVCGAPKS 45 (47)
T ss_dssp -TT-B-TTTSSBGG
T ss_pred CCCCcCcCCCCccc
Confidence 34599999986543
No 277
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=22.53 E-value=1.2e+02 Score=23.51 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=19.1
Q ss_pred Hhh-hcccCCceeeeeccCCCCcceEEEEeCC
Q 006756 145 LKR-FAVFKPVEVRIFWNEENPTAQAVVKFNN 175 (632)
Q Consensus 145 L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~ 175 (632)
|.+ |+.|.++.-..+.... +|+|.|+|.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~ 30 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFAS 30 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESS
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECC
Confidence 455 8889876644443333 7899999974
No 278
>PHA00616 hypothetical protein
Probab=22.51 E-value=27 Score=27.64 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=16.1
Q ss_pred eeccCCCCCCcCccCchhHHhhhc
Q 006756 40 LRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 40 ~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
|.||-|+.. +-..++|..|-.
T Consensus 2 YqC~~CG~~---F~~~s~l~~H~r 22 (44)
T PHA00616 2 YQCLRCGGI---FRKKKEVIEHLL 22 (44)
T ss_pred CccchhhHH---HhhHHHHHHHHH
Confidence 789999854 557888888853
No 279
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.51 E-value=9.9e+02 Score=25.75 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=29.8
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHH-------HHHHHHHHHHHHHHHHH
Q 006756 253 HVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEK-------DRLHYAFVEETRKMQRL 307 (632)
Q Consensus 253 ~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk-------~~lh~~yneE~~kmQ~~ 307 (632)
.-|..|-++|+..+...+++..+.++....+.++-.+. ....+.|.+-+|.||.-
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~n 113 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVN 113 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555555555555555555555555554444444332 23445566667777764
No 280
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.48 E-value=2e+02 Score=26.24 Aligned_cols=34 Identities=24% Similarity=0.500 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhHH------hhhhhhHHHhhhhHHHHhh
Q 006756 396 ALSKILQLEKQLDAK------QKLEMEIEDLKGKLEVMKH 429 (632)
Q Consensus 396 ~~~kil~LekqL~~k------Q~LELEi~qLkG~L~VmKh 429 (632)
.-.++.++|.+++.= +.|+++|.+++|.+..|.-
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 467788888888654 7899999999999987754
No 281
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=22.43 E-value=1.1e+03 Score=26.05 Aligned_cols=40 Identities=30% Similarity=0.402 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhc
Q 006756 388 EQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 388 ~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~ 430 (632)
.|..|--.++..|..|++.+. .+=.|.+.|...|..+|-.
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k---~~~~EnEeL~q~L~~ske~ 270 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCK---QLAAENEELQQHLQASKES 270 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHH
Confidence 345566667888888887663 5668899999999988764
No 282
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=22.16 E-value=1.5e+02 Score=29.16 Aligned_cols=78 Identities=15% Similarity=0.239 Sum_probs=33.7
Q ss_pred HHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 006756 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKK 331 (632)
Q Consensus 252 ~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~ 331 (632)
..+..+|...|...|-.+ +.........|.++.++-.+-|-.-.+-..+++......++.++.+.+++-.+|...+.
T Consensus 44 ~~~~~~l~eeik~~n~~~---~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~ 120 (155)
T PF07464_consen 44 QNVSSSLQEEIKDANPEA---EEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSE 120 (155)
T ss_dssp HHHHHHHHHHHTT-SSTH---HHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHhcChhH---HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433332 22333333444444333222233333333444455556666777777777766665544
Q ss_pred h
Q 006756 332 K 332 (632)
Q Consensus 332 e 332 (632)
+
T Consensus 121 ~ 121 (155)
T PF07464_consen 121 G 121 (155)
T ss_dssp S
T ss_pred h
Confidence 3
No 283
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.10 E-value=1.5e+03 Score=27.69 Aligned_cols=188 Identities=19% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006756 244 VQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLS 323 (632)
Q Consensus 244 ~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~ 323 (632)
......+.+.-++-+.+++-.-+..++.+....+..---|++--.+-+...+.-.+.+...++.+--..+.---+..=..
T Consensus 156 ~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~ 235 (716)
T KOG4593|consen 156 LGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSL 235 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q ss_pred H-HHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 324 C-ELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQ 402 (632)
Q Consensus 324 ~-eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~ 402 (632)
. ||+........+-.+|.++......-+-.+..-++-++ .|..=+-|.+.+.+++-+
T Consensus 236 ~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~----------------------tv~~LqeE~e~Lqskl~~ 293 (716)
T KOG4593|consen 236 SEELEAINKNMKDQLQELEELERALSQLREELATLRENRE----------------------TVGLLQEELEGLQSKLGR 293 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------hhHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHH
Q 006756 403 LEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKT 465 (632)
Q Consensus 403 LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~ 465 (632)
|++=-+..--||||...|+.+|+=-+...++.+ .+..+..-|+.+...-+.
T Consensus 294 ~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~------------~~~~~~~~~~~~~~e~s~ 344 (716)
T KOG4593|consen 294 LEKLQSTLLGLELENEDLLTKLQRWERADQEMG------------SLRTPEDLMEKLVNEQSR 344 (716)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh------------ccCCHHHHHHHHHHHHHH
No 284
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=21.72 E-value=8.5e+02 Score=24.71 Aligned_cols=153 Identities=24% Similarity=0.352 Sum_probs=82.1
Q ss_pred HHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhh
Q 006756 270 SELQCKFNETTMSLSRMLEEKDRLHYAFVEETR---KMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREAL 346 (632)
Q Consensus 270 ~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~---kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~ 346 (632)
.+|..-||..|. .+-.++.+..+||. +-..........|..+|.+|+.-|..-..+.+.-.++|. .
T Consensus 12 ~~iK~YYndIT~-------~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~----~ 80 (201)
T PF13851_consen 12 QEIKNYYNDITL-------NNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK----N 80 (201)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----H
Confidence 444455555432 23344455555544 444445556777888888888888766666554333333 2
Q ss_pred hHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-hhhhhHHHhhhhHH
Q 006756 347 TERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQ-KLEMEIEDLKGKLE 425 (632)
Q Consensus 347 ~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ-~LELEi~qLkG~L~ 425 (632)
-+.++..|..- ...+..+++ -+..-+.|-+.+..++.+|+++-+.=. +.+.-|+.+..+..
T Consensus 81 y~kdK~~L~~~---------k~rl~~~ek---------~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~ 142 (201)
T PF13851_consen 81 YEKDKQSLQNL---------KARLKELEK---------ELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTG 142 (201)
T ss_pred HHHHHHHHHHH---------HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333211 112222222 233445666777777777777666532 44544554444433
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHH
Q 006756 426 VMKHLGDEDDAAVQKKMKEMNDELESKIDDLDE 458 (632)
Q Consensus 426 VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~ 458 (632)
.=- -=+.+||..|.+.|+.++..|..
T Consensus 143 ~kn-------~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 143 LKN-------LLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 12457888888888888887763
No 285
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.69 E-value=42 Score=36.02 Aligned_cols=23 Identities=35% Similarity=0.735 Sum_probs=17.1
Q ss_pred HHHhhhhcCCCCccccccccccc
Q 006756 585 LKELNEYNPSGRYVIPDLWNFKE 607 (632)
Q Consensus 585 l~E~neyN~sgry~v~elWN~ke 607 (632)
|-+++.=|=+|||.||+||+.|-
T Consensus 110 lY~~~~p~Y~grfTVPVLWD~k~ 132 (319)
T KOG2903|consen 110 LYYIASPNYTGRFTVPVLWDLKT 132 (319)
T ss_pred HHhhcCCCCCceEEEEEEEcccc
Confidence 33445556779999999999763
No 286
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=21.66 E-value=1.4e+03 Score=27.23 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhHHhhhhhhHHHhhh
Q 006756 396 ALSKILQLEKQLDAKQKLEMEIEDLKG 422 (632)
Q Consensus 396 ~~~kil~LekqL~~kQ~LELEi~qLkG 422 (632)
+++-|-+||+|+|.-+.=++|-...+-
T Consensus 127 i~~~ideLe~q~d~~ea~~~e~~~erh 153 (575)
T KOG2150|consen 127 ISNQIDELERQVDSFEAEELERFIERH 153 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999998886666555543
No 287
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=21.62 E-value=9.5e+02 Score=26.21 Aligned_cols=66 Identities=29% Similarity=0.431 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHhh-HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHH
Q 006756 391 VEKEEALSKILQLEKQLD-AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLI 467 (632)
Q Consensus 391 rEke~~~~kil~LekqL~-~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~ 467 (632)
.|-|+=..|-+-.-.||| .|+.|--+|.-||-+|+ ++-.-+..++.++.+|..+++.+-.....|-
T Consensus 87 ~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~le-----------e~eE~~~~~~re~~eK~~elEr~K~~~d~L~ 153 (302)
T PF09738_consen 87 AEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLE-----------ELEETLAQLQREYREKIRELERQKRAHDSLR 153 (302)
T ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777886 57888888888888887 3444577888888888888887766666665
No 288
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=21.62 E-value=4e+02 Score=24.50 Aligned_cols=78 Identities=31% Similarity=0.417 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 006756 316 LEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEE 395 (632)
Q Consensus 316 ~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~ 395 (632)
+.+-...+..++..+..++.-..+|- ..|.+|--+ .|..-+++...
T Consensus 3 l~~e~~~r~~ae~~~~~ie~ElEeLT----------asLFeEAN~------------------------MVa~ar~e~~~ 48 (100)
T PF06428_consen 3 LEEERERREEAEQEKEQIESELEELT----------ASLFEEANK------------------------MVADARRERAA 48 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH------------------------HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhHHh----hhhhhHHHhhhhHHHH
Q 006756 396 ALSKILQLEKQLDAKQ----KLEMEIEDLKGKLEVM 427 (632)
Q Consensus 396 ~~~kil~LekqL~~kQ----~LELEi~qLkG~L~Vm 427 (632)
+..+..+|+++|..+. .|..++..|+-.++-|
T Consensus 49 ~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~ 84 (100)
T PF06428_consen 49 LEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESM 84 (100)
T ss_dssp HHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 289
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=21.45 E-value=3.6e+02 Score=29.48 Aligned_cols=30 Identities=37% Similarity=0.461 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhHHHh
Q 006756 391 VEKEEALSKILQLEKQLDAKQKLEMEIEDL 420 (632)
Q Consensus 391 rEke~~~~kil~LekqL~~kQ~LELEi~qL 420 (632)
..+.++..+|.+||+.|.+||+=||+-..+
T Consensus 45 ~~rK~~~~~~~~le~el~qkH~kEL~~~~~ 74 (302)
T KOG2606|consen 45 KKRKELTEDIAKLEKELSQKHKKELEKLKL 74 (302)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhcc
Confidence 445568889999999999999999998887
No 290
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=21.40 E-value=9.1e+02 Score=24.91 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=15.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhh
Q 006756 324 CELETKKKKLDSWSKQLNKREAL 346 (632)
Q Consensus 324 ~eLe~k~~eld~r~k~L~k~~a~ 346 (632)
..|+.-+...+.+|.++++....
T Consensus 125 ~~leKAK~~Y~~~c~e~Ekar~~ 147 (234)
T cd07652 125 AAAEKAKARYDSLADDLERVKTG 147 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555666777888888765443
No 291
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.34 E-value=4e+02 Score=30.53 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=17.9
Q ss_pred HHhhHHHHHHHhhccHHHHHHHHHHH
Q 006756 460 ESLNKTLIAKERQSNDELQEARRELI 485 (632)
Q Consensus 460 e~~nq~L~~ker~sndELq~aRk~lI 485 (632)
..-..+|..+.+....+|+.++++|-
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 144 LTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777788888888764
No 292
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=21.24 E-value=3.2e+02 Score=31.30 Aligned_cols=36 Identities=28% Similarity=0.499 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 006756 378 ADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQKL 413 (632)
Q Consensus 378 ade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~L 413 (632)
...+.|+-+++-+++||+|+.-..+.|++|.+.+.+
T Consensus 38 eh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~ 73 (436)
T PF01093_consen 38 EHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEV 73 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888999999999999999999888764
No 293
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=21.22 E-value=4.5e+02 Score=29.56 Aligned_cols=55 Identities=31% Similarity=0.504 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 006756 288 EEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNK 342 (632)
Q Consensus 288 eEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k 342 (632)
+++..+-..|.+.++.-++.....-++++.++..+...|+....+|+...++|.+
T Consensus 313 ~~~~~~k~~~~~ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~ 367 (373)
T COG5019 313 EEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEK 367 (373)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555556666666666666666666666666666666666666666555555543
No 294
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=21.21 E-value=39 Score=31.24 Aligned_cols=14 Identities=29% Similarity=0.876 Sum_probs=10.8
Q ss_pred cCCeeeccCCCCCC
Q 006756 36 VNGTLRCPFCSGKK 49 (632)
Q Consensus 36 ~~~~~~CP~C~gkk 49 (632)
.+-+|.||||---+
T Consensus 20 ldt~FnClfcnHek 33 (109)
T KOG3214|consen 20 LDTQFNCLFCNHEK 33 (109)
T ss_pred hheeeccCcccccc
Confidence 45689999997544
No 295
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=21.19 E-value=7.7e+02 Score=24.01 Aligned_cols=95 Identities=24% Similarity=0.339 Sum_probs=42.6
Q ss_pred HhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhh---hHHHH
Q 006756 275 KFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREAL---TERER 351 (632)
Q Consensus 275 k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~---~~~er 351 (632)
++..+...|.++-.+++.|.. +.+-+..=-+.+..+...++-+++..+.++++-..+|..=...|..+... --+++
T Consensus 4 K~l~v~~kLK~~~~e~dsle~-~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLED-HVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666555555532 22222221222344455555666666655444333333333333322221 12455
Q ss_pred HhhHHHHHhhhhhhchhHh
Q 006756 352 QKLDADRQQNDLRNNSLQL 370 (632)
Q Consensus 352 ~kL~~Ek~kn~~~~~~l~l 370 (632)
..|.++.++...+.+.|..
T Consensus 83 ~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 83 ENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666665555444454444
No 296
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.06 E-value=2.9e+02 Score=32.01 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=6.6
Q ss_pred ccCCCCChhhHH
Q 006756 502 RLGEIDPKPFQD 513 (632)
Q Consensus 502 rmGeld~kpf~~ 513 (632)
+-|+|+...|.-
T Consensus 191 ~~~~~~~~~f~~ 202 (475)
T PRK13729 191 VPNRIQRKTFTY 202 (475)
T ss_pred CCCceeEEEeec
Confidence 455566666643
No 297
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.91 E-value=1.4e+03 Score=26.97 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=11.3
Q ss_pred HhhHHhhhhhhHHHhhhhHH
Q 006756 406 QLDAKQKLEMEIEDLKGKLE 425 (632)
Q Consensus 406 qL~~kQ~LELEi~qLkG~L~ 425 (632)
-++.-+.++.|+.+|.-+|.
T Consensus 396 ~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 396 LLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444556666666666654
No 298
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=20.80 E-value=33 Score=41.95 Aligned_cols=71 Identities=27% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHH
Q 006756 409 AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRE 483 (632)
Q Consensus 409 ~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~ 483 (632)
+|.+|.-.+..+...|+..+.--+ .+.+.-..|..++++-.-+|+...+.+..|-.|-|+-.-.|.+.+..
T Consensus 322 aKKkL~~~L~el~e~le~~~~~~~----~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~ 392 (859)
T PF01576_consen 322 AKKKLERKLQELQEQLEEANAKVS----SLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAK 392 (859)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455555555555555555544321 23344445666666666666666666667777766666666666554
No 299
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.71 E-value=1.3e+03 Score=26.57 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=50.5
Q ss_pred eeeecCCCCCCCchhhhhhhccCCCCHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH----
Q 006756 214 WFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE---- 289 (632)
Q Consensus 214 WvAradDy~~~g~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE---- 289 (632)
|+|.++|+...|.+|..- .|||--.---.++..-++..+-+.-.-.--.|..-+.++.-.+.+--.||.-.|.+
T Consensus 19 ~~a~ee~~~rq~a~~qa~--q~dl~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ 96 (542)
T KOG0993|consen 19 YLAKEEDLKRQNAVLQAA--QDDLGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPT 96 (542)
T ss_pred ccchhhHHHhccchhhhh--cchHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCcc
Confidence 589999999888887642 23333322222332222222222211112234445555666666667777777765
Q ss_pred -HHHHHHHHHHHHHHHHHH
Q 006756 290 -KDRLHYAFVEETRKMQRL 307 (632)
Q Consensus 290 -k~~lh~~yneE~~kmQ~~ 307 (632)
--++|+.|..|..-.|+-
T Consensus 97 ye~q~~~~leqertq~qq~ 115 (542)
T KOG0993|consen 97 YECQMCQNLEQERTQLQQN 115 (542)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 226777777777666653
No 300
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.63 E-value=9.9e+02 Score=25.02 Aligned_cols=15 Identities=7% Similarity=0.184 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 006756 292 RLHYAFVEETRKMQR 306 (632)
Q Consensus 292 ~lh~~yneE~~kmQ~ 306 (632)
+.+..|.+||..+.+
T Consensus 32 ~~L~e~~kE~~~L~~ 46 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQ 46 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444443333
No 301
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.55 E-value=6.5e+02 Score=22.85 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=12.2
Q ss_pred HHhhhhhhHHHhhhhHHHHhhcC
Q 006756 409 AKQKLEMEIEDLKGKLEVMKHLG 431 (632)
Q Consensus 409 ~kQ~LELEi~qLkG~L~VmKh~~ 431 (632)
+.+.|+.++.+.+-.+..+.-++
T Consensus 25 q~~~le~~~~E~~~v~~eL~~l~ 47 (110)
T TIGR02338 25 QKQQVEAQLKEAEKALEELERLP 47 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 34455555555555555555554
No 302
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.43 E-value=8.2e+02 Score=27.55 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhhccCCc--------ccccccccCCC
Q 006756 436 AAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGAR--------TNIGVKRLGEI 506 (632)
Q Consensus 436 ~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~~~~~~~--------~~IgiKrmGel 506 (632)
.+++..+.+|.+++.+.+..+. ++++...++...+..++... .++=||+.|+.
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~------------------~~~~~~~~~~~~lPN~~~~~vP~g~~~~~n~~~~~~g~~ 132 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALK------------------ALEAELQDKLLSIPNIPHESVPVGKDEEDNLEVKRWGTP 132 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCcccCeEeeecCCC
Confidence 5667777777777777666663 56666666777777665322 34447777753
No 303
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=20.39 E-value=60 Score=35.72 Aligned_cols=28 Identities=32% Similarity=0.667 Sum_probs=20.0
Q ss_pred HHHhhhhhHHHhhcCCeEeecCCeeeccCCCCC
Q 006756 16 INEYLEKPYEELRAGKYKVRVNGTLRCPFCSGK 48 (632)
Q Consensus 16 i~~y~~k~y~~Lk~g~~kVk~~~~~~CP~C~gk 48 (632)
|-|..+++|+.-+=| .+..||||.|..+
T Consensus 266 l~eC~~~f~~~e~L~-----g~d~W~CpkC~~k 293 (415)
T COG5533 266 LQECIDRFYEEEKLE-----GKDAWRCPKCGRK 293 (415)
T ss_pred HHHHHHHhhhHHhhc-----CcccccCchhccc
Confidence 456778888765433 4678999999743
No 304
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=20.34 E-value=4.4e+02 Score=23.45 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=19.9
Q ss_pred HhhHHhhhhhhHHHhhhhHHHHhhc
Q 006756 406 QLDAKQKLEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 406 qL~~kQ~LELEi~qLkG~L~VmKh~ 430 (632)
..+...++-.+|+..+++..|+..|
T Consensus 2 ~~e~~~k~~~~l~~v~~~~~lL~em 26 (100)
T PF03127_consen 2 RPEQVSKRRSELEKVKNNAKLLNEM 26 (100)
T ss_dssp HHCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888999999888876
No 305
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=20.33 E-value=1.4e+03 Score=26.64 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=12.8
Q ss_pred HHhhhhhhHHHhhhhHH-HHhhcC
Q 006756 409 AKQKLEMEIEDLKGKLE-VMKHLG 431 (632)
Q Consensus 409 ~kQ~LELEi~qLkG~L~-VmKh~~ 431 (632)
+.+..+..|+.|+.+|. +|=+|+
T Consensus 429 ~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 429 ALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHHHHHHHHHHhHheehh
Confidence 34455566666666663 555553
No 306
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=20.20 E-value=1e+03 Score=24.95 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=15.6
Q ss_pred cccccccccCCCCChhhHHHH
Q 006756 495 RTNIGVKRLGEIDPKPFQDAC 515 (632)
Q Consensus 495 ~~~IgiKrmGeld~kpf~~ac 515 (632)
....+| -|-.+|..||+..|
T Consensus 159 ~~~~~~-flsq~~l~~Y~~~e 178 (256)
T PF14932_consen 159 QQNPPV-FLSQMPLEQYLSQE 178 (256)
T ss_pred cCCCCc-hhhhCCHHHHHHHH
Confidence 345666 88899999998876
No 307
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=20.02 E-value=1.8e+03 Score=27.75 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhhHHHHH
Q 006756 311 NVRRILEEQEKLSCELET 328 (632)
Q Consensus 311 ~~~rI~~e~ekl~~eLe~ 328 (632)
++.+.+...++|-..|++
T Consensus 897 ~~d~~~~~~e~~~~~l~s 914 (1259)
T KOG0163|consen 897 EYDVAVKNYEKLVKRLDS 914 (1259)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 333344444444444444
Done!