Query 006756
Match_columns 632
No_of_seqs 163 out of 183
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 08:07:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8u_A Putative uncharacterize 100.0 1E-64 3.4E-69 485.9 12.1 166 111-277 3-172 (172)
2 2v71_A Nuclear distribution pr 95.7 1.5 5.1E-05 42.9 20.6 154 254-425 11-171 (189)
3 1i84_S Smooth muscle myosin he 94.9 0.068 2.3E-06 64.4 10.2 9 19-27 554-562 (1184)
4 1i84_S Smooth muscle myosin he 94.6 0.12 4E-06 62.3 11.1 36 259-294 863-898 (1184)
5 3oja_B Anopheles plasmodium-re 92.8 1.7 5.7E-05 47.5 15.3 17 391-407 565-581 (597)
6 3oja_B Anopheles plasmodium-re 92.5 2.2 7.5E-05 46.6 15.7 10 415-424 544-553 (597)
7 2fxo_A Myosin heavy chain, car 92.0 5.2 0.00018 36.3 15.1 75 396-484 46-120 (129)
8 2dfs_A Myosin-5A; myosin-V, in 91.3 4.9 0.00017 48.3 17.9 19 440-458 1023-1041(1080)
9 1wez_A HnRNP H', FTP-3, hetero 88.9 0.45 1.6E-05 40.6 4.9 58 120-186 15-74 (102)
10 3ghg_A Fibrinogen alpha chain; 87.5 4.1 0.00014 45.2 12.2 94 241-334 52-148 (562)
11 3vkg_A Dynein heavy chain, cyt 86.9 1E+02 0.0034 41.6 27.1 66 415-484 2035-2103(3245)
12 3vkg_A Dynein heavy chain, cyt 86.6 69 0.0024 43.0 24.6 23 320-342 1937-1959(3245)
13 2cq3_A RNA-binding protein 9; 86.5 1.3 4.4E-05 37.0 6.2 48 121-176 16-65 (103)
14 2dfs_A Myosin-5A; myosin-V, in 85.9 16 0.00055 43.9 17.3 14 323-336 923-936 (1080)
15 2dnn_A RNA-binding protein 12; 85.5 0.97 3.3E-05 39.5 5.0 60 121-189 17-78 (109)
16 2fxo_A Myosin heavy chain, car 85.0 22 0.00074 32.2 16.5 97 258-359 18-114 (129)
17 2dgw_A Probable RNA-binding pr 84.3 1.5 5.3E-05 35.7 5.5 58 120-186 10-69 (91)
18 3na7_A HP0958; flagellar bioge 83.6 37 0.0013 33.7 20.4 34 378-411 91-124 (256)
19 2hgm_A HNRPF protein, heteroge 82.8 1.5 5.1E-05 39.5 5.2 56 121-185 43-102 (126)
20 2lmi_A GRSF-1, G-rich sequence 82.7 1.6 5.6E-05 37.0 5.2 60 120-188 11-76 (107)
21 2cpy_A RNA-binding protein 12; 82.5 1.6 5.3E-05 37.6 5.0 57 121-186 16-76 (114)
22 2dha_A FLJ20171 protein; RRM d 81.3 1.4 4.8E-05 39.4 4.4 58 120-186 23-87 (123)
23 1x4a_A Splicing factor, argini 80.9 2.5 8.6E-05 35.7 5.7 55 121-184 23-78 (109)
24 1wg5_A Heterogeneous nuclear r 80.7 2.2 7.5E-05 36.1 5.2 56 121-185 16-75 (104)
25 2db1_A Heterogeneous nuclear r 80.6 2.2 7.5E-05 37.1 5.4 59 120-187 17-81 (118)
26 2cqi_A Nucleolysin TIAR; RNA r 80.2 2.3 7.9E-05 35.4 5.2 57 120-185 15-73 (103)
27 3d2w_A TAR DNA-binding protein 80.2 2.8 9.5E-05 34.7 5.6 48 120-177 11-59 (89)
28 2hgn_A Heterogeneous nuclear r 78.9 1.3 4.4E-05 40.5 3.4 56 120-184 46-103 (139)
29 2err_A Ataxin-2-binding protei 78.4 3.1 0.00011 35.5 5.5 51 121-179 30-82 (109)
30 2e5j_A Methenyltetrahydrofolat 78.2 2.4 8.1E-05 35.1 4.6 48 121-178 20-68 (97)
31 2v71_A Nuclear distribution pr 77.9 54 0.0018 32.0 19.7 136 317-484 38-177 (189)
32 4f25_A Polyadenylate-binding p 77.0 2.3 7.9E-05 36.7 4.3 53 123-184 8-62 (115)
33 2ywk_A Putative RNA-binding pr 77.0 4 0.00014 33.2 5.6 56 121-185 17-75 (95)
34 3ghg_A Fibrinogen alpha chain; 76.9 25 0.00086 39.2 13.2 80 249-332 81-160 (562)
35 3lqv_A PRE-mRNA branch site pr 76.2 3.9 0.00013 34.7 5.5 49 121-177 9-58 (115)
36 2cpe_A RNA-binding protein EWS 75.8 4.1 0.00014 34.5 5.5 57 120-185 15-83 (113)
37 1deq_A Fibrinogen (alpha chain 75.7 40 0.0014 36.2 13.9 108 218-334 41-151 (390)
38 1wi8_A EIF-4B, eukaryotic tran 75.3 3.1 0.00011 34.8 4.5 59 120-187 15-77 (104)
39 1wel_A RNA-binding protein 12; 75.3 3.6 0.00012 35.8 5.1 57 121-186 26-86 (124)
40 2e5h_A Zinc finger CCHC-type a 75.0 11 0.00038 30.5 7.8 48 121-176 17-68 (94)
41 2ek1_A RNA-binding protein 12; 74.7 3.1 0.00011 33.9 4.3 57 120-185 15-75 (95)
42 3ulh_A THO complex subunit 4; 74.6 4.4 0.00015 33.8 5.3 49 120-176 29-80 (107)
43 2dgp_A Bruno-like 4, RNA bindi 73.8 6.6 0.00023 32.7 6.3 59 121-188 14-77 (106)
44 2khc_A Testis-specific RNP-typ 73.8 13 0.00044 31.5 8.2 50 121-178 41-94 (118)
45 1c1g_A Tropomyosin; contractIl 73.3 59 0.002 30.2 32.7 41 442-482 218-258 (284)
46 2la6_A RNA-binding protein FUS 73.1 8.4 0.00029 31.8 6.7 56 120-184 13-80 (99)
47 2ku7_A MLL1 PHD3-CYP33 RRM chi 72.9 28 0.00096 30.0 10.4 50 120-177 63-116 (140)
48 2hgl_A HNRPF protein, heteroge 72.0 3.9 0.00013 37.1 4.7 57 121-186 45-107 (136)
49 4a8x_A RNA-binding protein wit 71.6 4.6 0.00016 32.2 4.6 51 120-178 4-59 (88)
50 2dgv_A HnRNP M, heterogeneous 71.4 4.4 0.00015 32.8 4.4 49 121-177 9-59 (92)
51 2dnz_A Probable RNA-binding pr 71.3 7.9 0.00027 31.4 6.0 49 121-177 6-58 (95)
52 2dng_A Eukaryotic translation 70.3 4.8 0.00017 33.5 4.6 58 120-186 15-75 (103)
53 2cqp_A RNA-binding protein 12; 69.6 4.5 0.00016 33.2 4.2 50 120-177 15-68 (98)
54 2cph_A RNA binding motif prote 69.6 7.1 0.00024 32.5 5.5 50 121-178 16-70 (107)
55 3nmr_A Cugbp ELAV-like family 69.2 5.6 0.00019 35.2 5.0 50 121-178 96-148 (175)
56 1rk8_A CG8781-PA, CG8781-PA pr 68.9 5.3 0.00018 36.5 4.9 56 120-184 72-131 (165)
57 2rs2_A Musashi-1, RNA-binding 68.0 7.9 0.00027 33.0 5.5 57 120-185 25-85 (109)
58 3qne_A Seryl-tRNA synthetase, 67.9 42 0.0014 37.0 12.5 58 432-507 70-135 (485)
59 2wbr_A GW182, gawky, LD47780P; 67.6 4.9 0.00017 34.7 4.1 41 125-176 12-53 (89)
60 1x4e_A RNA binding motif, sing 67.5 10 0.00034 30.2 5.8 55 122-185 7-65 (85)
61 2lxi_A RNA-binding protein 10; 67.2 4.9 0.00017 33.2 3.9 48 122-177 3-55 (91)
62 3md1_A Nuclear and cytoplasmic 66.8 7.9 0.00027 30.5 5.0 49 121-177 2-54 (83)
63 1x5s_A Cold-inducible RNA-bind 66.8 7 0.00024 32.3 4.9 48 121-176 13-64 (102)
64 2x1f_A MRNA 3'-END-processing 66.7 8.6 0.0003 31.5 5.4 48 122-177 4-55 (96)
65 2d9p_A Polyadenylate-binding p 66.7 7.5 0.00026 32.2 5.0 48 121-176 16-65 (103)
66 1uaw_A Mouse-musashi-1; RNP-ty 66.7 7.4 0.00025 30.2 4.7 55 122-185 2-60 (77)
67 2dnl_A Cytoplasmic polyadenyla 66.5 5.8 0.0002 34.0 4.4 48 122-177 10-63 (114)
68 1x5t_A Splicing factor 3B subu 65.9 9.7 0.00033 31.0 5.5 48 121-176 6-58 (96)
69 2dit_A HIV TAT specific factor 65.8 4.7 0.00016 34.5 3.6 57 121-178 16-76 (112)
70 2dgs_A DAZ-associated protein 65.7 12 0.0004 30.8 6.0 56 122-186 12-71 (99)
71 2xs2_A Deleted in azoospermia- 65.6 7.5 0.00026 32.2 4.8 57 120-185 9-68 (102)
72 2fc9_A NCL protein; structure 65.4 6.7 0.00023 32.4 4.5 55 120-185 15-71 (101)
73 1wf0_A TDP-43, TAR DNA-binding 65.4 6.8 0.00023 31.6 4.4 46 122-177 7-53 (88)
74 1x4c_A Splicing factor, argini 65.0 9.5 0.00032 32.2 5.4 53 120-185 15-68 (108)
75 2cq0_A Eukaryotic translation 64.9 7.9 0.00027 32.1 4.8 50 120-177 15-68 (103)
76 2cq4_A RNA binding motif prote 64.4 19 0.00065 30.3 7.3 60 120-188 25-88 (114)
77 2lkz_A RNA-binding protein 5; 64.2 8.2 0.00028 32.6 4.8 49 122-178 11-65 (95)
78 3beg_B Splicing factor, argini 64.1 13 0.00045 31.9 6.2 53 120-185 16-69 (115)
79 1oo0_B CG8781-PA, drosophila Y 64.1 9.8 0.00034 31.9 5.3 49 121-177 27-79 (110)
80 2dnm_A SRP46 splicing factor; 64.0 10 0.00035 31.4 5.4 51 120-178 13-67 (103)
81 2cpf_A RNA binding motif prote 63.9 5.7 0.0002 32.6 3.7 48 121-176 6-60 (98)
82 2ki2_A SS-DNA binding protein 63.8 9.2 0.00032 30.8 4.9 47 123-177 4-54 (90)
83 1p27_B RNA-binding protein 8A; 63.4 8.8 0.0003 31.9 4.8 49 121-177 24-76 (106)
84 1x5u_A Splicing factor 3B subu 63.2 10 0.00035 31.4 5.2 50 120-177 15-68 (105)
85 2kt5_A RNA and export factor-b 63.1 11 0.00039 32.3 5.7 56 121-185 36-94 (124)
86 2cqb_A Peptidyl-prolyl CIS-tra 62.9 9.6 0.00033 31.4 5.0 49 121-177 13-65 (102)
87 2jrs_A RNA-binding protein 39; 62.5 8.3 0.00028 32.8 4.6 50 120-177 26-79 (108)
88 3sde_A Paraspeckle component 1 62.3 7.9 0.00027 37.8 5.0 52 121-180 97-151 (261)
89 3md3_A Nuclear and cytoplasmic 62.2 12 0.00041 32.6 5.8 54 122-184 2-58 (166)
90 2cqd_A RNA-binding region cont 62.1 13 0.00043 31.6 5.7 48 121-176 18-69 (116)
91 3tnu_A Keratin, type I cytoske 61.9 90 0.0031 28.1 11.6 41 266-306 5-45 (131)
92 2krb_A Eukaryotic translation 61.8 11 0.00039 29.8 5.1 54 122-177 3-58 (81)
93 1x4h_A RNA-binding protein 28; 61.2 12 0.00041 31.2 5.4 49 121-177 16-68 (111)
94 3bs9_A Nucleolysin TIA-1 isofo 61.1 12 0.0004 29.8 5.0 48 121-176 7-58 (87)
95 1s79_A Lupus LA protein; RRM, 60.9 13 0.00045 31.6 5.6 56 121-185 12-70 (103)
96 3s7r_A Heterogeneous nuclear r 60.9 13 0.00044 29.7 5.2 57 120-185 11-71 (87)
97 2jwn_A Embryonic polyadenylate 60.8 12 0.00041 32.0 5.4 59 120-187 36-98 (124)
98 1iqt_A AUF1, heterogeneous nuc 60.7 6.5 0.00022 30.5 3.3 54 123-185 2-59 (75)
99 2hvz_A Splicing factor, argini 60.5 8.9 0.00031 31.6 4.3 57 122-189 2-60 (101)
100 2j76_E EIF-4B, EIF4B, eukaryot 60.4 8.3 0.00028 32.1 4.1 58 120-186 19-80 (100)
101 2cqc_A Arginine/serine-rich sp 60.3 10 0.00034 30.7 4.5 49 121-177 16-68 (95)
102 2dnh_A Bruno-like 5, RNA bindi 59.3 14 0.00048 30.6 5.4 50 120-177 15-67 (105)
103 3ghg_C Fibrinogen gamma chain; 59.1 96 0.0033 33.6 13.0 75 227-307 25-113 (411)
104 1x4b_A Heterogeneous nuclear r 58.8 13 0.00045 31.5 5.2 58 120-186 27-88 (116)
105 1whw_A Hypothetical protein ri 58.5 17 0.00056 29.8 5.6 49 121-177 9-61 (99)
106 2cqg_A TDP-43, TAR DNA-binding 58.5 12 0.00041 31.0 4.8 56 121-185 16-75 (103)
107 2mss_A Protein (musashi1); RNA 58.2 14 0.00048 28.6 4.9 54 123-185 2-59 (75)
108 2fc8_A NCL protein; structure 58.2 10 0.00034 31.3 4.3 54 121-185 16-72 (102)
109 2do0_A HnRNP M, heterogeneous 58.0 13 0.00043 31.4 4.9 47 122-176 17-66 (114)
110 3mdf_A Peptidyl-prolyl CIS-tra 57.9 14 0.00047 29.2 4.9 49 121-177 8-60 (85)
111 3oja_A Leucine-rich immune mol 57.6 1.9E+02 0.0065 30.6 15.2 21 295-315 324-344 (487)
112 3ucg_A Polyadenylate-binding p 57.3 16 0.00054 29.1 5.2 57 122-187 8-68 (89)
113 2do4_A Squamous cell carcinoma 56.7 17 0.00059 29.8 5.5 49 121-177 18-69 (100)
114 2dgo_A Cytotoxic granule-assoc 56.6 14 0.00048 31.2 5.0 48 121-176 16-67 (115)
115 2dnq_A RNA-binding protein 4B; 56.6 15 0.00052 29.6 5.0 42 122-176 10-52 (90)
116 4fxv_A ELAV-like protein 1; RN 56.4 14 0.00049 30.9 5.0 48 122-177 21-72 (99)
117 1fjc_A Nucleolin RBD2, protein 56.4 6.9 0.00023 32.0 2.9 47 121-177 17-64 (96)
118 2jvr_A Nucleolar protein 3; RN 56.4 11 0.00037 32.9 4.3 47 120-175 28-76 (111)
119 1why_A Hypothetical protein ri 56.0 16 0.00055 29.9 5.1 53 121-185 18-71 (97)
120 3tnu_B Keratin, type II cytosk 55.2 1.2E+02 0.004 27.2 12.1 41 266-306 3-43 (129)
121 2dh8_A DAZ-associated protein 55.1 9.2 0.00031 31.8 3.5 57 121-186 17-77 (105)
122 3bas_A Myosin heavy chain, str 55.1 97 0.0033 26.3 11.0 39 258-296 19-57 (89)
123 1m1j_A Fibrinogen alpha subuni 54.5 2E+02 0.0068 31.7 14.4 107 217-332 38-147 (491)
124 1x5o_A RNA binding motif, sing 54.4 18 0.00062 30.4 5.3 49 120-176 25-76 (114)
125 2ocy_A RAB guanine nucleotide 54.3 1.5E+02 0.005 28.1 17.8 42 386-430 103-144 (154)
126 3nmr_A Cugbp ELAV-like family 54.2 13 0.00045 32.8 4.6 49 122-178 5-59 (175)
127 1h2v_Z 20 kDa nuclear CAP bind 54.2 15 0.00051 32.9 5.0 57 120-185 39-99 (156)
128 2dhg_A TRNA selenocysteine ass 54.1 16 0.00054 30.2 4.8 56 121-185 10-69 (104)
129 2cpz_A CUG triplet repeat RNA- 54.1 39 0.0013 28.4 7.4 48 121-176 26-77 (115)
130 1p1t_A Cleavage stimulation fa 54.0 12 0.0004 31.0 4.0 48 122-177 10-61 (104)
131 2elu_A Zinc finger protein 406 53.9 4.2 0.00014 29.3 1.0 21 40-63 10-30 (37)
132 2fy1_A RNA-binding motif prote 53.8 20 0.00067 30.9 5.5 48 121-176 8-58 (116)
133 3ns6_A Eukaryotic translation 53.7 8.7 0.0003 32.1 3.2 60 122-184 8-71 (100)
134 2ghp_A U4/U6 snRNA-associated 53.7 15 0.00053 35.8 5.4 57 121-186 42-100 (292)
135 1x4g_A Nucleolysin TIAR; struc 53.6 16 0.00054 30.7 4.8 46 121-177 26-72 (109)
136 2div_A TRNA selenocysteine ass 53.5 14 0.00047 30.3 4.3 48 121-176 10-62 (99)
137 3ex7_B RNA-binding protein 8A; 53.3 16 0.00055 31.3 4.9 49 121-177 23-75 (126)
138 1nu4_A U1A RNA binding domain; 52.7 6.7 0.00023 32.0 2.2 49 121-177 9-62 (97)
139 1whx_A Hypothetical protein ri 52.5 17 0.00059 31.0 5.0 47 121-178 11-58 (111)
140 2ytc_A PRE-mRNA-splicing facto 52.5 19 0.00065 28.5 4.9 44 121-175 13-57 (85)
141 2xnq_A Nuclear polyadenylated 52.5 20 0.00069 29.7 5.2 44 122-177 24-68 (97)
142 2i2y_A Fusion protein consists 52.4 16 0.00054 32.5 4.9 47 121-177 74-121 (150)
143 2cpd_A Apobec-1 stimulating pr 52.1 20 0.00067 29.5 5.1 53 121-185 16-69 (99)
144 2cpi_A CCR4-NOT transcription 52.0 24 0.00082 29.9 5.7 50 120-177 15-74 (111)
145 2cpj_A Non-POU domain-containi 51.9 20 0.00069 29.4 5.1 47 121-178 16-63 (99)
146 3p5t_L Cleavage and polyadenyl 51.7 11 0.00039 30.5 3.5 54 122-184 3-62 (90)
147 2kvi_A Nuclear polyadenylated 51.4 18 0.00061 29.7 4.7 43 122-176 12-55 (96)
148 2cjk_A Nuclear polyadenylated 51.4 21 0.00072 31.3 5.5 57 120-185 87-147 (167)
149 1wf1_A RNA-binding protein RAL 51.3 14 0.00047 31.1 4.0 51 121-184 28-79 (110)
150 2nlw_A Eukaryotic translation 51.1 18 0.00063 30.3 4.8 56 121-178 16-73 (105)
151 1fje_B Nucleolin RBD12, protei 51.1 17 0.00057 32.4 4.8 55 120-185 99-154 (175)
152 2la4_A Nuclear and cytoplasmic 51.0 20 0.00067 29.5 4.9 47 121-178 28-75 (101)
153 3pgw_A U1-A; protein-RNA compl 50.9 39 0.0013 32.7 7.8 49 121-179 208-257 (282)
154 3tyt_A Heterogeneous nuclear r 50.1 22 0.00076 33.8 5.7 64 122-194 125-192 (205)
155 2dis_A Unnamed protein product 49.6 21 0.00072 29.7 4.9 47 122-176 10-62 (109)
156 2kn4_A Immunoglobulin G-bindin 49.0 18 0.00061 32.2 4.6 56 120-184 70-129 (158)
157 4f02_A Polyadenylate-binding p 49.0 14 0.00047 34.8 4.1 49 122-178 105-155 (213)
158 3s8s_A Histone-lysine N-methyl 49.0 21 0.00073 30.6 5.0 49 121-177 7-59 (110)
159 2bz2_A Negative elongation fac 48.6 25 0.00086 30.6 5.4 34 140-176 49-83 (121)
160 3md3_A Nuclear and cytoplasmic 48.5 22 0.00075 30.9 5.1 48 121-176 88-139 (166)
161 2jvo_A Nucleolar protein 3; nu 48.4 20 0.00068 30.5 4.7 44 120-176 31-75 (108)
162 2f3j_A RNA and export factor b 48.3 21 0.0007 33.4 5.1 49 121-177 89-140 (177)
163 1l3k_A Heterogeneous nuclear r 48.1 23 0.00077 32.0 5.3 48 121-176 105-156 (196)
164 2e44_A Insulin-like growth fac 48.1 24 0.00083 28.6 5.0 49 120-177 15-65 (96)
165 3nmd_A CGMP dependent protein 48.0 44 0.0015 27.9 6.4 27 398-427 40-66 (72)
166 2yh0_A Splicing factor U2AF 65 47.7 22 0.00076 32.1 5.1 51 120-178 114-168 (198)
167 2hzc_A Splicing factor U2AF 65 47.2 19 0.00064 28.5 4.1 49 120-177 6-64 (87)
168 2kxn_B Transformer-2 protein h 47.1 21 0.00073 31.4 4.8 55 122-185 48-106 (129)
169 4dnd_A Syntaxin-10, SYN10; str 46.8 78 0.0027 28.8 8.5 72 414-489 37-118 (130)
170 3n9u_C Cleavage and polyadenyl 46.8 18 0.0006 33.2 4.3 56 121-185 56-117 (156)
171 2cpx_A Hypothetical protein FL 46.4 13 0.00046 31.2 3.2 46 121-176 26-77 (115)
172 3hnw_A Uncharacterized protein 46.4 1.8E+02 0.0061 26.7 12.2 23 386-408 112-134 (138)
173 1b7f_A Protein (SXL-lethal pro 46.1 20 0.00067 31.5 4.4 55 122-185 5-63 (168)
174 2m2b_A RNA-binding protein 10; 45.9 13 0.00046 32.4 3.2 58 122-188 25-88 (131)
175 2dq0_A Seryl-tRNA synthetase; 45.2 1.2E+02 0.004 33.0 11.1 55 433-505 69-131 (455)
176 2dgx_A KIAA0430 protein; RRM d 45.1 26 0.0009 28.7 4.8 47 122-177 11-63 (96)
177 2e5g_A U6 snRNA-specific termi 45.0 40 0.0014 27.3 5.8 53 122-185 10-63 (94)
178 2lea_A Serine/arginine-rich sp 44.2 19 0.00066 31.9 4.0 49 120-176 47-99 (135)
179 2g4b_A Splicing factor U2AF 65 44.1 36 0.0012 29.9 5.9 51 120-178 94-148 (172)
180 1m1j_C Fibrinogen gamma chain; 43.9 1.5E+02 0.0052 31.9 11.6 61 227-293 25-96 (409)
181 3v4m_A Splicing factor U2AF 65 43.5 14 0.00047 31.8 2.8 58 122-179 7-72 (105)
182 1b7f_A Protein (SXL-lethal pro 43.5 28 0.00097 30.4 5.0 49 120-176 89-141 (168)
183 3egn_A RNA-binding protein 40; 43.4 23 0.00077 31.2 4.3 55 122-185 47-110 (143)
184 1wex_A Hypothetical protein (r 42.9 36 0.0012 29.0 5.5 52 121-184 16-68 (104)
185 2dgt_A RNA-binding protein 30; 42.8 35 0.0012 27.5 5.1 43 121-176 11-54 (92)
186 1l3k_A Heterogeneous nuclear r 42.6 26 0.0009 31.6 4.8 56 121-185 14-73 (196)
187 3brv_B NF-kappa-B essential mo 42.3 1.1E+02 0.0039 25.4 7.9 47 308-354 6-52 (70)
188 2cq1_A PTB-like protein L; RRM 42.3 38 0.0013 28.8 5.5 45 121-176 16-61 (101)
189 3u59_A Tropomyosin beta chain; 42.2 1.7E+02 0.0057 25.2 10.4 73 390-466 15-91 (101)
190 1fxl_A Paraneoplastic encephal 41.9 28 0.00097 30.2 4.7 47 122-176 4-54 (167)
191 2e7s_A RAB guanine nucleotide 41.7 1.5E+02 0.005 27.5 9.5 43 385-430 90-132 (135)
192 3o0z_A RHO-associated protein 41.4 2.4E+02 0.0084 26.9 18.0 17 392-408 119-135 (168)
193 2cjk_A Nuclear polyadenylated 40.9 32 0.0011 30.1 4.9 48 122-177 5-56 (167)
194 3a7p_A Autophagy protein 16; c 40.7 2.3E+02 0.0078 26.8 10.8 63 384-467 68-130 (152)
195 2dnp_A RNA-binding protein 14; 40.6 28 0.00097 28.0 4.2 44 121-177 10-54 (90)
196 1cii_A Colicin IA; bacteriocin 40.5 1.9E+02 0.0066 31.9 11.6 90 316-430 348-437 (602)
197 1u6f_A Tcubp1, RNA-binding pro 40.3 20 0.00069 31.2 3.5 55 122-185 44-102 (139)
198 2voo_A Lupus LA protein; RNA-b 40.0 33 0.0011 32.4 5.1 49 121-177 110-161 (193)
199 2m0f_A Zinc finger and BTB dom 39.8 13 0.00044 22.4 1.6 22 38-62 1-22 (29)
200 3s6e_A RNA-binding protein 39; 39.7 21 0.00072 31.3 3.5 55 122-177 9-66 (114)
201 3na7_A HP0958; flagellar bioge 39.5 2.9E+02 0.0098 27.2 22.1 9 475-483 179-187 (256)
202 2ghp_A U4/U6 snRNA-associated 39.3 41 0.0014 32.7 5.9 51 119-176 209-264 (292)
203 2dgu_A Heterogeneous nuclear r 38.7 28 0.00097 28.8 4.0 43 122-177 13-56 (103)
204 3smz_A Protein raver-1, ribonu 38.5 39 0.0013 32.7 5.6 51 120-177 184-237 (284)
205 3l4q_C Phosphatidylinositol 3- 37.9 2.8E+02 0.0095 26.6 14.8 14 308-321 56-69 (170)
206 2cqh_A IGF-II mRNA-binding pro 37.9 19 0.00066 29.1 2.8 44 122-177 10-55 (93)
207 1sjq_A Polypyrimidine tract-bi 37.8 32 0.0011 30.0 4.3 45 120-176 16-62 (105)
208 1fxl_A Paraneoplastic encephal 37.5 48 0.0016 28.7 5.5 48 121-176 89-140 (167)
209 3pgw_S U1-70K; protein-RNA com 37.2 87 0.003 33.5 8.5 55 121-184 103-161 (437)
210 2eqb_B RAB guanine nucleotide 37.2 2.1E+02 0.0073 25.1 11.5 82 324-411 15-96 (97)
211 1wg1_A KIAA1579 protein, homol 37.0 28 0.00096 28.0 3.6 51 122-185 7-58 (88)
212 1p7a_A BF3, BKLF, kruppel-like 36.7 17 0.00057 23.7 1.9 25 36-63 8-32 (37)
213 2d9o_A DNAJ (HSP40) homolog, s 35.4 67 0.0023 27.4 5.9 37 139-177 28-65 (100)
214 2qfj_A FBP-interacting repress 34.9 52 0.0018 30.1 5.5 47 121-175 126-176 (216)
215 2pe8_A Splicing factor 45; RRM 34.4 61 0.0021 27.6 5.5 84 122-223 10-98 (105)
216 2xdj_A Uncharacterized protein 34.2 1.1E+02 0.0037 26.0 6.8 44 400-457 22-65 (83)
217 2qfj_A FBP-interacting repress 33.9 59 0.002 29.7 5.7 49 120-176 28-80 (216)
218 3mq7_A Bone marrow stromal ant 33.6 1.7E+02 0.006 26.5 8.4 29 439-467 77-105 (121)
219 2k48_A Nucleoprotein; viral pr 33.4 2.6E+02 0.0089 24.9 9.5 56 344-412 48-103 (107)
220 3r27_A HnRNP L, heterogeneous 33.3 63 0.0021 27.9 5.4 45 122-177 23-68 (100)
221 2kvh_A Zinc finger and BTB dom 33.1 21 0.00071 21.5 1.8 22 38-62 2-23 (27)
222 1fj7_A Nucleolin RBD1, protein 32.6 11 0.00036 31.2 0.4 58 120-186 17-77 (101)
223 3lss_A Seryl-tRNA synthetase; 32.4 2.3E+02 0.0078 31.2 10.9 50 439-506 109-168 (484)
224 2lw1_A ABC transporter ATP-bin 31.9 1.9E+02 0.0065 24.2 8.1 26 437-462 60-85 (89)
225 2ad9_A Polypyrimidine tract-bi 31.8 51 0.0018 29.2 4.7 45 121-177 32-78 (119)
226 2els_A Zinc finger protein 406 31.7 23 0.00077 23.0 1.8 23 37-62 7-29 (36)
227 2a3j_A U1 small nuclear ribonu 31.3 52 0.0018 29.2 4.7 47 122-176 31-82 (127)
228 2elr_A Zinc finger protein 406 30.9 24 0.00082 22.7 1.9 24 36-62 6-29 (36)
229 2elt_A Zinc finger protein 406 30.1 24 0.00081 22.7 1.7 23 37-62 7-29 (36)
230 2elp_A Zinc finger protein 406 29.9 26 0.0009 22.8 2.0 24 36-62 6-30 (37)
231 2m0d_A Zinc finger and BTB dom 29.9 25 0.00087 21.1 1.8 23 38-63 2-24 (30)
232 3hnw_A Uncharacterized protein 29.1 2.9E+02 0.01 25.2 9.5 11 324-334 35-45 (138)
233 3pgw_A U1-A; protein-RNA compl 29.0 64 0.0022 31.1 5.4 48 122-177 11-63 (282)
234 3lay_A Zinc resistance-associa 29.0 2.7E+02 0.0094 26.5 9.6 27 333-359 115-141 (175)
235 1ard_A Yeast transcription fac 28.6 28 0.00095 20.9 1.8 21 39-62 2-22 (29)
236 3q2s_C Cleavage and polyadenyl 28.4 53 0.0018 31.9 4.6 56 121-185 69-130 (229)
237 1wii_A Hypothetical UPF0222 pr 28.3 15 0.00053 31.4 0.6 13 36-48 20-32 (85)
238 1rik_A E6APC1 peptide; E6-bind 28.2 26 0.00089 21.1 1.6 21 39-62 2-22 (29)
239 3nmd_A CGMP dependent protein 28.1 1.4E+02 0.0047 25.0 6.3 45 442-486 21-65 (72)
240 2v66_B Nuclear distribution pr 28.0 3.3E+02 0.011 24.4 13.8 26 392-417 85-110 (111)
241 2elx_A Zinc finger protein 406 27.6 29 0.00098 22.0 1.8 24 37-63 5-28 (35)
242 2lcw_A RNA-binding protein FUS 33.3 13 0.00045 31.6 0.0 55 122-185 9-75 (116)
243 1klr_A Zinc finger Y-chromosom 27.2 29 0.00098 20.8 1.7 22 39-63 2-23 (30)
244 1qm9_A Polypyrimidine tract-bi 27.1 56 0.0019 29.7 4.3 53 122-185 5-59 (198)
245 2m0e_A Zinc finger and BTB dom 27.1 29 0.00099 20.6 1.6 21 39-62 2-22 (29)
246 2ic9_A Nucleocapsid protein; h 26.9 3.1E+02 0.01 24.1 8.5 62 338-412 12-73 (96)
247 2kvf_A Zinc finger and BTB dom 26.8 30 0.001 20.8 1.7 23 38-63 2-24 (28)
248 1qm9_A Polypyrimidine tract-bi 26.8 60 0.0021 29.5 4.4 46 121-176 121-168 (198)
249 2adc_A Polypyrimidine tract-bi 26.2 60 0.0021 30.7 4.5 51 122-184 36-89 (229)
250 1paa_A Yeast transcription fac 26.2 31 0.0011 20.9 1.7 20 39-61 2-21 (30)
251 2ke4_A CDC42-interacting prote 26.1 3.2E+02 0.011 23.7 9.5 42 391-432 15-56 (98)
252 1jmt_A Splicing factor U2AF 35 26.0 35 0.0012 29.0 2.5 31 149-179 49-81 (104)
253 1d0q_A DNA primase; zinc-bindi 25.9 71 0.0024 27.4 4.5 10 55-64 70-79 (103)
254 1srk_A Zinc finger protein ZFP 25.8 33 0.0011 21.9 1.8 24 37-63 5-28 (35)
255 2p22_C Protein SRN2; endosome, 25.8 4.6E+02 0.016 25.3 10.7 70 267-342 79-149 (192)
256 3pq1_A Poly(A) RNA polymerase; 25.7 47 0.0016 36.4 4.0 36 140-177 64-100 (464)
257 4dci_A Uncharacterized protein 25.6 1.3E+02 0.0045 28.2 6.5 96 320-430 28-123 (150)
258 1x4d_A Matrin 3; structural ge 25.5 76 0.0026 27.1 4.6 46 120-177 15-63 (102)
259 1wrd_A TOM1, target of MYB pro 25.3 1.9E+02 0.0065 25.1 7.1 21 410-430 8-28 (103)
260 2elq_A Zinc finger protein 406 25.3 32 0.0011 22.2 1.7 24 37-63 7-30 (36)
261 3mq9_A Bone marrow stromal ant 25.2 2.9E+02 0.0099 29.0 10.0 90 376-466 376-469 (471)
262 2wvr_A Geminin; DNA replicatio 25.1 1.7E+02 0.0058 28.9 7.3 36 392-430 116-151 (209)
263 1sjr_A Polypyrimidine tract-bi 25.0 61 0.0021 30.6 4.1 48 123-179 49-97 (164)
264 3viq_B Mating-type switching p 24.9 81 0.0028 27.1 4.5 31 392-425 2-32 (85)
265 3smz_A Protein raver-1, ribonu 24.9 65 0.0022 31.1 4.5 39 579-617 237-275 (284)
266 2dq3_A Seryl-tRNA synthetase; 24.7 1.5E+02 0.0053 31.6 7.7 56 433-506 68-131 (425)
267 1x4f_A Matrin 3; structural ge 24.6 89 0.0031 27.3 4.9 49 120-178 25-74 (112)
268 2kvg_A Zinc finger and BTB dom 24.2 26 0.00087 21.3 1.0 22 38-62 2-23 (27)
269 2elv_A Zinc finger protein 406 23.8 38 0.0013 21.8 1.9 24 37-63 7-30 (36)
270 1x5p_A Negative elongation fac 23.8 1E+02 0.0034 25.0 4.9 34 140-176 25-59 (97)
271 1t6f_A Geminin; coiled-coil, c 23.7 1.2E+02 0.0042 22.2 4.5 21 314-334 4-24 (37)
272 2go8_A Hypothetical protein YQ 23.4 56 0.0019 29.4 3.4 99 120-222 11-116 (122)
273 2ic6_A Nucleocapsid protein; h 23.3 3.4E+02 0.012 22.9 8.9 60 340-412 14-73 (78)
274 2adc_A Polypyrimidine tract-bi 23.0 1E+02 0.0035 29.1 5.4 46 121-176 152-199 (229)
275 4f02_A Polyadenylate-binding p 22.8 95 0.0033 29.0 5.1 48 122-177 17-68 (213)
276 1wlq_A Geminin; coiled-coil; 2 22.4 2.8E+02 0.0097 23.7 7.3 35 310-344 31-65 (83)
277 2kw0_A CCMH protein; oxidoredu 22.3 22 0.00076 30.8 0.5 13 38-50 22-34 (90)
278 2yrc_A Protein transport prote 22.1 37 0.0013 27.1 1.7 15 33-47 26-41 (59)
279 1znf_A 31ST zinc finger from X 22.1 42 0.0014 19.8 1.7 22 39-63 1-22 (27)
280 1m1j_B Fibrinogen beta chain; 22.1 5.4E+02 0.018 28.2 11.4 101 227-327 87-196 (464)
281 2hl7_A Cytochrome C-type bioge 22.0 24 0.00081 30.2 0.6 13 38-50 25-37 (84)
282 2elo_A Zinc finger protein 406 22.0 32 0.0011 22.3 1.2 25 36-63 6-30 (37)
283 2ept_A Zinc finger protein 32; 21.4 45 0.0015 22.2 1.9 25 36-63 7-31 (41)
284 1wle_A Seryl-tRNA synthetase; 21.3 2.2E+02 0.0074 31.4 8.2 53 436-506 119-178 (501)
285 1uii_A Geminin; human, DNA rep 21.2 2.6E+02 0.0088 23.9 6.8 48 380-430 27-82 (83)
286 4b6x_A AVRRPS4, avirulence pro 21.2 74 0.0025 27.2 3.4 8 475-482 43-50 (90)
287 2en2_A B-cell lymphoma 6 prote 21.2 43 0.0015 22.3 1.8 24 36-62 8-31 (42)
288 3u1c_A Tropomyosin alpha-1 cha 21.0 3.6E+02 0.012 23.2 8.0 64 417-484 4-67 (101)
289 1sjj_A Actinin; 3-helix bundle 21.0 9.4E+02 0.032 27.2 20.5 91 378-468 579-673 (863)
290 2oeq_A Protein of unknown func 20.8 2.8E+02 0.0096 24.3 7.5 64 420-491 51-114 (122)
291 2e5i_A Heterogeneous nuclear r 20.7 1.1E+02 0.0039 27.1 4.9 44 124-178 29-74 (124)
292 2emi_A Zinc finger protein 484 20.6 47 0.0016 22.7 1.9 25 36-63 9-33 (46)
293 3sde_A Paraspeckle component 1 20.5 94 0.0032 30.0 4.7 53 121-185 23-76 (261)
294 2ytb_A Zinc finger protein 32; 20.4 48 0.0016 22.1 1.8 25 36-63 8-32 (42)
295 2zuo_A MVP, major vault protei 20.3 1.1E+03 0.038 27.8 16.6 26 262-287 633-658 (861)
296 1o3x_A ADP-ribosylation factor 20.3 2.4E+02 0.0081 25.9 7.0 62 414-480 50-125 (140)
297 2yu5_A Zinc finger protein 473 20.3 49 0.0017 22.4 1.9 25 36-63 9-33 (44)
298 2eq1_A Zinc finger protein 347 20.2 48 0.0016 22.7 1.9 25 36-63 9-33 (46)
299 2enf_A Zinc finger protein 347 20.2 49 0.0017 22.6 1.9 25 36-63 9-33 (46)
300 2j8a_A Histone-lysine N-methyl 20.1 1.9E+02 0.0063 26.9 6.2 37 139-175 17-57 (136)
301 2i1j_A Moesin; FERM, coiled-co 20.1 2.5E+02 0.0086 31.2 8.5 154 300-488 301-460 (575)
302 3ghg_B Fibrinogen beta chain; 20.0 6.3E+02 0.022 27.7 11.3 70 227-306 82-151 (461)
No 1
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=1e-64 Score=485.86 Aligned_cols=166 Identities=35% Similarity=0.698 Sum_probs=158.4
Q ss_pred CCCCceeeecceEEEEeccc-cccCCccccCChhhHhh-h--cccCCceeeeeccCCCCcceEEEEeCCChhchhhHHHH
Q 006756 111 PEQEDLYVWPWMGIIVNIVM-ETKDRGSFLDSGYWLKR-F--AVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDF 186 (632)
Q Consensus 111 ~~~de~iVWPwmgII~Ni~t-e~~dg~~~G~s~~~L~d-~--~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~l 186 (632)
++++++|||||||||+|||| +.+||+++|+|+++|++ | ++|+|++|+||||++||+|+|||+|++||+||+||++|
T Consensus 3 ~~~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 3 CDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp ---CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred CCCCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHH
Confidence 78899999999999999999 56799999999999999 8 99999999999999999999999999999999999999
Q ss_pred HhhhhhcCCChhhhhhhcCCCCCceeeeeeecCCCCCCCchhhhhhhccCCCCHHHHHHHhhhhHHHHHHHHHhHHHhhh
Q 006756 187 EKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKN 266 (632)
Q Consensus 187 ek~Fe~~~~GRkdW~~~~~~~~~~LYGWvAradDy~~~g~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~kn 266 (632)
|+||+.+||||+||.+++++ +++|||||||+|||++.||||+||||+||||||+||++|++|++++||++|+++|++||
T Consensus 83 ek~Fe~~~~GK~dW~~~~~~-~~~lyGW~Ar~dDy~s~~~iG~~Lrk~gdLKTv~~i~~E~~rk~~~lv~~L~~~ie~kn 161 (172)
T 4e8u_A 83 DKAYTVDGHGKKDWLKKDGP-KLGLYGWIARADDYNGNNIIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKK 161 (172)
T ss_dssp HHHHHHTTCSHHHHTCSSSC-CCSCEEEECBHHHHHSSSHHHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHhhCCCC-CCceEEEecccccccCCChHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987666 89999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhh
Q 006756 267 EDLSELQCKFN 277 (632)
Q Consensus 267 k~l~elE~k~n 277 (632)
+||++||++||
T Consensus 162 ~~l~ele~k~~ 172 (172)
T 4e8u_A 162 KDMKEIEELCS 172 (172)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhhC
Confidence 99999999997
No 2
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.72 E-value=1.5 Score=42.86 Aligned_cols=154 Identities=20% Similarity=0.220 Sum_probs=74.7
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhH
Q 006756 254 VVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKL 333 (632)
Q Consensus 254 lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~el 333 (632)
-|+|.+.........+.+|+.-|++-..|=+.+-.|-+.-+.+...-.+.++. .+.+|..++++-+.++
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~-----------~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQA-----------DNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 46788888888888888888888887666555554444444433333333332 2333333333333333
Q ss_pred HHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchh--HhhHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 334 DSWSKQLNKREALTERERQKLDADRQQNDLRNNSL--QLASMEQK-----KADENVLRLVEEQKVEKEEALSKILQLEKQ 406 (632)
Q Consensus 334 d~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l--~lA~~EQ~-----kade~vlkLve~hkrEke~~~~kil~Lekq 406 (632)
+.-..+... .--.|+.+...-...+..| .+-.+||. ++.-..-.-+++-..--..++.++.-||-.
T Consensus 80 ~~~~~e~~~-------~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~E 152 (189)
T 2v71_A 80 EHQYAQSYK-------QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESE 152 (189)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 332222111 1111222211111111111 11222321 222233334444445556678888889999
Q ss_pred hhHHhhhhhhHHHhhhhHH
Q 006756 407 LDAKQKLEMEIEDLKGKLE 425 (632)
Q Consensus 407 L~~kQ~LELEi~qLkG~L~ 425 (632)
|+.|+.|..++|+|+.-+.
T Consensus 153 l~EKe~l~~~~QRLkdE~r 171 (189)
T 2v71_A 153 LDEKESLLVSVQRLKDEAR 171 (189)
T ss_dssp HHHHHHHHCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986554
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.94 E-value=0.068 Score=64.38 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=4.5
Q ss_pred hhhhhHHHh
Q 006756 19 YLEKPYEEL 27 (632)
Q Consensus 19 y~~k~y~~L 27 (632)
|..+.|..+
T Consensus 554 ~~~kl~~~~ 562 (1184)
T 1i84_S 554 FVEKLIQEQ 562 (1184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 445555544
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.60 E-value=0.12 Score=62.30 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=14.9
Q ss_pred HhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHH
Q 006756 259 ASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLH 294 (632)
Q Consensus 259 ~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh 294 (632)
..++......+..++....+....+..+.+++..+.
T Consensus 863 ~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444333
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.82 E-value=1.7 Score=47.52 Aligned_cols=17 Identities=29% Similarity=0.212 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006756 391 VEKEEALSKILQLEKQL 407 (632)
Q Consensus 391 rEke~~~~kil~LekqL 407 (632)
+|...+-.+|.+|++++
T Consensus 565 ~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 565 QETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444444444443
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.53 E-value=2.2 Score=46.58 Aligned_cols=10 Identities=30% Similarity=0.215 Sum_probs=3.7
Q ss_pred hhHHHhhhhH
Q 006756 415 MEIEDLKGKL 424 (632)
Q Consensus 415 LEi~qLkG~L 424 (632)
-|+.+|+..+
T Consensus 544 ~~~~~le~~~ 553 (597)
T 3oja_B 544 QENIALEKQL 553 (597)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHHHHH
Confidence 3333333333
No 7
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.03 E-value=5.2 Score=36.30 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccH
Q 006756 396 ALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSND 475 (632)
Q Consensus 396 ~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~snd 475 (632)
+...+..|..||.+.+.+=.+++.....|.-- -.+|...|.+-.+.+++.++.|..|...-|+.-+
T Consensus 46 l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~--------------k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~ 111 (129)
T 2fxo_A 46 LLQEKNDLQLQVQAEQDNLADAEERCDQLIKN--------------KIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLED 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666666655555555555322 2356667777777778888888888888888888
Q ss_pred HHHHHHHHH
Q 006756 476 ELQEARREL 484 (632)
Q Consensus 476 ELq~aRk~l 484 (632)
++++-++.|
T Consensus 112 e~~~Lk~~l 120 (129)
T 2fxo_A 112 ECSELKRDI 120 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877765
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.29 E-value=4.9 Score=48.27 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhHHhhHHH
Q 006756 440 KKMKEMNDELESKIDDLDE 458 (632)
Q Consensus 440 ~k~~~l~~~l~ek~~el~~ 458 (632)
.++..|+++...-+..+++
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444454444444444443
No 9
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.92 E-value=0.45 Score=40.64 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=44.9
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCC-CcceEEEEeCCChhchhhHHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDF 186 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~l 186 (632)
+.++.|-|+|... +...|++ |+.|.++.|+.++++.| ++|+|.|+|.+.- .-..|+.+
T Consensus 15 ~~~l~V~nLp~~~--------te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~-~a~~Al~~ 74 (102)
T 1wez_A 15 GHCVHMRGLPYRA--------TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHE-DAVAAMAK 74 (102)
T ss_dssp SCEEEEESCCTTC--------CHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSH-HHHHHHTT
T ss_pred CCEEEEeCCCCCC--------CHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHH-HHHHHHHh
Confidence 4677889998633 6788999 99999999999998866 5799999998643 44555544
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.47 E-value=4.1 Score=45.21 Aligned_cols=94 Identities=10% Similarity=0.090 Sum_probs=68.9
Q ss_pred HHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 241 SDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE---KDRLHYAFVEETRKMQRLARDNVRRILE 317 (632)
Q Consensus 241 ~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE---k~~lh~~yneE~~kmQ~~ar~~~~rI~~ 317 (632)
..+..+..+.-.+.|+.|+++++.-++.-++.+.-|+.+...|+.-+.. ++....+|.+|++..++.-.+.++..|.
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQls 131 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQ 131 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888999999999999888888888888888888665543 5556677777888877777777666665
Q ss_pred HHHHhhHHHHHHHhhHH
Q 006756 318 EQEKLSCELETKKKKLD 334 (632)
Q Consensus 318 e~ekl~~eLe~k~~eld 334 (632)
--..|+.-|+.+..+|.
T Consensus 132 nIrvLQsnLedq~~kIQ 148 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMK 148 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666666665555443
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.92 E-value=1e+02 Score=41.55 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=36.8
Q ss_pred hhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHH-HHh--hccHHHHHHHHHH
Q 006756 415 MEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIA-KER--QSNDELQEARREL 484 (632)
Q Consensus 415 LEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~-ker--~sndELq~aRk~l 484 (632)
-+++.|..+|+.++.- -.+...+.+.|+.+++.....|+.-+.|-..|-- |+| .+-.+|+...+-|
T Consensus 2035 ~~L~~le~~l~~L~~~----~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2035 ATITALEKSIATYKEE----YATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 3444455555544431 1234455667777777777777777777777763 344 3335555555543
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.56 E-value=69 Score=43.03 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=13.4
Q ss_pred HHhhHHHHHHHhhHHHHHHHHHH
Q 006756 320 EKLSCELETKKKKLDSWSKQLNK 342 (632)
Q Consensus 320 ekl~~eLe~k~~eld~r~k~L~k 342 (632)
..|+.+|..+..+|+.+.++-++
T Consensus 1937 ~~l~~~L~~~~~~L~~k~~ea~~ 1959 (3245)
T 3vkg_A 1937 KDLQVSLAQKNRELDVKNEQANQ 1959 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666665555543
No 13
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.51 E-value=1.3 Score=37.00 Aligned_cols=48 Identities=25% Similarity=0.321 Sum_probs=37.6
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCCCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~Gh~G~aIV~F~~d 176 (632)
-++.|-|+|.. .+...|++ |+.|.++ .|....+..++.|+|.|.|.+.
T Consensus 16 ~~l~V~nlp~~--------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~ 65 (103)
T 2cq3_A 16 KRLHVSNIPFR--------FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS 65 (103)
T ss_dssp CEEEEESCCTT--------CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCH
Confidence 45668899763 36778999 9999875 6666677778999999999874
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.95 E-value=16 Score=43.93 Aligned_cols=14 Identities=29% Similarity=0.202 Sum_probs=0.0
Q ss_pred hHHHHHHHhhHHHH
Q 006756 323 SCELETKKKKLDSW 336 (632)
Q Consensus 323 ~~eLe~k~~eld~r 336 (632)
..+|+++..+|..|
T Consensus 923 ~~~LE~kl~eLq~r 936 (1080)
T 2dfs_A 923 HIGLENKIMQLQRK 936 (1080)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 15
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.47 E-value=0.97 Score=39.49 Aligned_cols=60 Identities=10% Similarity=0.111 Sum_probs=45.4
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCC-CcceEEEEeCCChhchhhHHHHHhh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDFEKA 189 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~lek~ 189 (632)
.++.|-|+|... +...|++ |+.|.+..|+.++++.| .+|++.|.|.+. .....|+.++.+
T Consensus 17 ~~v~V~nLp~~~--------te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~-~~a~~Al~~~~~ 78 (109)
T 2dnn_A 17 LYVSVHGMPFSA--------MENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSP-QDTFEALKRNRM 78 (109)
T ss_dssp HEEEEECCCSSC--------CHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSH-HHHHHHHHTTTE
T ss_pred CEEEEeCCCCCC--------CHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCH-HHHHHHHhcCCC
Confidence 578899998633 6678999 99998888998888776 589999999874 344556655433
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.05 E-value=22 Score=32.16 Aligned_cols=97 Identities=16% Similarity=0.242 Sum_probs=54.5
Q ss_pred HHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Q 006756 258 LASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWS 337 (632)
Q Consensus 258 L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~ 337 (632)
+...|..-...+...+....+.......++.++..|...-..|-..+ ..+..++..-.+.+.+|+.+.++|..|-
T Consensus 18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l-----~e~EE~~~~L~~~k~eLe~~l~el~~rl 92 (129)
T 2fxo_A 18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNL-----ADAEERCDQLIKNKIQLEAKVKEMNKRL 92 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444445555555555443333332211 1233344444556778888888888888
Q ss_pred HHHHHHHhhhHHHHHhhHHHHH
Q 006756 338 KQLNKREALTERERQKLDADRQ 359 (632)
Q Consensus 338 k~L~k~~a~~~~er~kL~~Ek~ 359 (632)
.+.+...+.-...+++|+.+..
T Consensus 93 eeeee~~~~L~~~kkkle~e~~ 114 (129)
T 2fxo_A 93 EDEEEMNAELTAKKRKLEDECS 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777777777776644
No 17
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.30 E-value=1.5 Score=35.68 Aligned_cols=58 Identities=22% Similarity=0.178 Sum_probs=42.5
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCC-CcceEEEEeCCChhchhhHHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDF 186 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~l 186 (632)
+.++.|-|+|.. .+...|++ |+.|.+..++...+..| ++|+|.|.|.+ ...-..|+.+
T Consensus 10 ~~~l~v~nLp~~--------~t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~-~~~a~~A~~~ 69 (91)
T 2dgw_A 10 CHTVKLRGAPFN--------VTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSN-EEEVKQALKC 69 (91)
T ss_dssp CCEEEEECCCSS--------CCHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSS-HHHHHHHHHS
T ss_pred ccEEEEECCCCC--------CCHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECC-HHHHHHHHHh
Confidence 456778899763 36678899 99997778888887555 58999999975 4445556553
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.65 E-value=37 Score=33.72 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 006756 378 ADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQ 411 (632)
Q Consensus 378 ade~vlkLve~hkrEke~~~~kil~LekqL~~kQ 411 (632)
.-..+.+-++..+++...+.+.|+++..++++.+
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~ 124 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKS 124 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566667777777777777776666543
No 19
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=82.79 E-value=1.5 Score=39.55 Aligned_cols=56 Identities=14% Similarity=0.072 Sum_probs=41.9
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc--eeeeeccCCC-CcceEEEEeCCChhchhhHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV--EVRIFWNEEN-PTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~--kv~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~ 185 (632)
.++.|-|+|... +...|++ |+.|.+. .|+.++++.| .+|++.|.|.+.-. ...|+.
T Consensus 43 ~~lfVgnLp~~~--------te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~-A~~Al~ 102 (126)
T 2hgm_A 43 GFVRLRGLPFGC--------TKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQEL-AEKALG 102 (126)
T ss_dssp CEEEEECCCTTC--------CHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTH-HHHHHT
T ss_pred CEEEEeCCCCCC--------CHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHH-HHHHHH
Confidence 356788998643 6778999 9999766 7888888776 68999999987543 344544
No 20
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=82.68 E-value=1.6 Score=37.05 Aligned_cols=60 Identities=7% Similarity=0.072 Sum_probs=44.0
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCC----ceeeeeccCCC-CcceEEEEeCCChhchhhHHHHHh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP----VEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDFEK 188 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p----~kv~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~lek 188 (632)
+.++.|-|+|... +...|++ |+.|.+ ..|+.+.+..| ++|+|.|.|.+ ...-..|+.++.
T Consensus 11 ~~~l~V~nLp~~~--------te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~~~ 76 (107)
T 2lmi_A 11 VFLIRAQGLPWSC--------TMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMES-EQDVQKALEKHR 76 (107)
T ss_dssp CCEEEEECCCSSC--------CSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSS-HHHHHHHHTTTT
T ss_pred ccEEEEeCCCCCC--------CHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECC-HHHHHHHHHhCc
Confidence 4557788997633 5677899 998876 67777777665 68999999975 555666766543
No 21
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.53 E-value=1.6 Score=37.61 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=41.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce--eeeeccCCC-CcceEEEEeCCChhchhhHHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE--VRIFWNEEN-PTAQAVVKFNNDWNGFMQASDF 186 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k--v~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~l 186 (632)
-++.|-|+|... +...|++ |+.|.++. |+.++++.| ++|+|.|.|.+ -..-..|+.+
T Consensus 16 ~~l~V~nLp~~~--------t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~-~~~a~~Al~~ 76 (114)
T 2cpy_A 16 VCAHITNIPFSI--------TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKN-EDDARKSERL 76 (114)
T ss_dssp CEEEEESCCTTS--------CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSS-HHHHHHHGGG
T ss_pred cEEEEeCcCCcC--------CHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECC-HHHHHHHHHh
Confidence 346688997633 5677899 99998765 888888766 68999999975 3444455443
No 22
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.30 E-value=1.4 Score=39.38 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=42.6
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-----eeeeeccCCC-CcceEEEEeCCChhchhhHHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-----EVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDF 186 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-----kv~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~l 186 (632)
+..+.|-|+|... +...|++ |+.|.++ .|+.+++..| ++|++.|.|.+.- .-..|+..
T Consensus 23 ~~~v~V~nLp~~~--------te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~-~A~~Al~~ 87 (123)
T 2dha_A 23 QVIVRMRGLPFTA--------TAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEE-YAQNALRK 87 (123)
T ss_dssp CCEEEECSCCTTC--------CHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHH-HHHHHHTT
T ss_pred CCEEEEeCCCCCC--------CHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHH-HHHHHHHh
Confidence 4567888997633 6778999 9999874 6888887766 5799999998744 34445543
No 23
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.86 E-value=2.5 Score=35.65 Aligned_cols=55 Identities=13% Similarity=0.032 Sum_probs=40.0
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~ 184 (632)
.++.|-|+|.. .+...|++ |+.|.++....+.....+.|+|.|.|.+.-. -..|+
T Consensus 23 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~-A~~A~ 78 (109)
T 1x4a_A 23 CRIYVGNLPPD--------IRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRD-AEDAV 78 (109)
T ss_dssp SEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHH-HHHHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHH-HHHHH
Confidence 46778899753 36778999 9999987766665555679999999976433 34444
No 24
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.66 E-value=2.2 Score=36.05 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=39.4
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce--eeeeccCCC-CcceEEEEeCCChhchhhHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE--VRIFWNEEN-PTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k--v~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~ 185 (632)
..+.|-|+|... +...|++ |+.|.++. |+..++..| ++|+|.|.|.+. ..-..|+.
T Consensus 16 ~~l~V~nLp~~~--------te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~-~~a~~A~~ 75 (104)
T 1wg5_A 16 GFVRLRGLPFGC--------SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQ-EIAEKALK 75 (104)
T ss_dssp CEEEEESCCTTC--------CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSH-HHHHHHHT
T ss_pred CEEEEeCCCCCC--------CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCH-HHHHHHHH
Confidence 467788998633 6678999 99999765 566666555 579999999763 33344443
No 25
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=80.65 E-value=2.2 Score=37.12 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=43.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCC----ceeeeeccCCC-CcceEEEEeCCChhchhhHHHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP----VEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDFE 187 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p----~kv~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~le 187 (632)
+.++.|-|+|... +...|++ |+.|.+ ..|+.+++..| ++|+|.|.|.+ -..-..|+.++
T Consensus 17 ~~~l~V~nLp~~~--------te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~~ 81 (118)
T 2db1_A 17 GYVVKLRGLPWSC--------SIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELES-EDDVKLALKKD 81 (118)
T ss_dssp CCEEEEESCCTTC--------CHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSS-HHHHHHHGGGT
T ss_pred CcEEEEeCCCCCC--------CHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECC-HHHHHHHHhcC
Confidence 3567788997633 6678899 999987 67888887776 48999999975 45556666653
No 26
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.23 E-value=2.3 Score=35.42 Aligned_cols=57 Identities=12% Similarity=0.178 Sum_probs=40.4
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCCCcceEEEEeCCChhchhhHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
+-++.|-|+|.. .+...|++ |+.|.++. +....+..++.|+|.|.|.+.- .-..|+.
T Consensus 15 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~-~a~~A~~ 73 (103)
T 2cqi_A 15 PRTLYVGNLSRD--------VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHR-DAAAALA 73 (103)
T ss_dssp CCEEEEESCCTT--------CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHH-HHHHHHH
T ss_pred CCEEEEeCCCcc--------CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHH-HHHHHHH
Confidence 345678899753 36788999 99998754 5666667778999999998543 3344443
No 27
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=80.21 E-value=2.8 Score=34.70 Aligned_cols=48 Identities=17% Similarity=0.071 Sum_probs=35.2
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
|+++.|-|+|.. .+...|++ |+.|.++.-..+ ...+.||+.|.|.+.-
T Consensus 11 ~~~l~V~~Lp~~--------~te~~L~~~F~~~G~i~~v~i--~~~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 11 GSKVFVGRCTED--------MTAEELQQFFCQYGEVVDVFI--PKPFRAFAFVTFADDK 59 (89)
T ss_dssp CCEEEEESCCTT--------CCHHHHHHHHTTTSCEEEEEC--CSSCCSEEEEEESCHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHhccCCEEEEEE--eeCCCCEEEEEECCHH
Confidence 678888999763 36788999 999987533322 2247899999998754
No 28
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=78.86 E-value=1.3 Score=40.52 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=42.5
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCC-CcceEEEEeCCChhchhhHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEEN-PTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~ 184 (632)
+.++.|-|+|... +...|++ |+.|.+..|+.++++.| ++|++.|+|.+. ..-..|+
T Consensus 46 ~~~lfV~nLp~~~--------te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~-e~A~~Al 103 (139)
T 2hgn_A 46 GHCVHMRGLPYKA--------TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATH-EEAVAAM 103 (139)
T ss_dssp CCCEECCSCCTTC--------CHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSHH-HHHHHHT
T ss_pred CCEEEEeCCCCCC--------CHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCCH-HHHHHHH
Confidence 3467788987633 6788999 99999999999998876 589999999753 3334444
No 29
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.40 E-value=3.1 Score=35.50 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=38.2
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCCCcceEEEEeCCChhc
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEENPTAQAVVKFNNDWNG 179 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~Gh~G~aIV~F~~dw~G 179 (632)
-++.|-|++.. .+...|++ |+.|.++ .+....+..++.|+|.|.|.+.-..
T Consensus 30 ~~l~V~nLp~~--------~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A 82 (109)
T 2err_A 30 KRLHVSNIPFR--------FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 82 (109)
T ss_dssp CEEEEESCCTT--------CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHH
T ss_pred CEEEEECCCCc--------CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHH
Confidence 44667888753 46778999 9999865 5666667777899999999885543
No 30
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.15 E-value=2.4 Score=35.13 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=37.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWN 178 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~ 178 (632)
.++.|-|+|. ..+...|++ |+.|.++.+...++ .+.|+|.|.|.+.-.
T Consensus 20 ~~l~V~nL~~--------~~t~~~l~~~F~~~G~v~~~~~~~--~~~g~afV~f~~~~~ 68 (97)
T 2e5j_A 20 ADVYVGNLPR--------DARVSDLKRALRELGSVPLRLTWQ--GPRRRAFLHYPDSAA 68 (97)
T ss_dssp CEEEEECCCT--------TCCHHHHHHHHHHTTCCCSEEEEE--TTTTEEEEECSSHHH
T ss_pred CEEEEeCCCC--------cCcHHHHHHHHHhcCCEEEEEEcC--CCCcEEEEEECCHHH
Confidence 4677889975 336778999 99999987776664 578999999987543
No 31
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=77.93 E-value=54 Score=31.97 Aligned_cols=136 Identities=22% Similarity=0.253 Sum_probs=69.5
Q ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHH----HHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHH
Q 006756 317 EEQEKLSCELETKKKKLDSWSKQLNKREALTERE----RQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVE 392 (632)
Q Consensus 317 ~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~e----r~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrE 392 (632)
....-|-.+||.....++.+.++|....+.-..+ |.|+..-.... +-..+.++ +-+..-...
T Consensus 38 esSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~-----~~~~~~Lq---------~el~~l~~~ 103 (189)
T 2v71_A 38 EGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQS-----YKQVSVLE---------DDLSQTRAI 103 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH---------HHHHHHHHH
Confidence 3444566677777777777777776444333322 22222111110 01122222 223333456
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhh
Q 006756 393 KEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQ 472 (632)
Q Consensus 393 ke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~ 472 (632)
++.+..+|..||..-| -||-....+...|+-+.+.-+ ....+..=|..+|.+|+ .|...+|-|.
T Consensus 104 ~~~l~~~ireLEq~ND---dlEr~~R~~~~SleD~e~kln----~aiEr~alLE~El~EKe----~l~~~~QRLk----- 167 (189)
T 2v71_A 104 KEQLHKYVRELEQAND---DLERAKRATIMSLEDFEQRLN----QAIERNAFLESELDEKE----SLLVSVQRLK----- 167 (189)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----HHHCCC---------
T ss_pred HHHHHHHHHHHHHHhh---HHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHH----HHHHHHHHHH-----
Confidence 7889999999999888 466667777777777766532 45566777888887755 2334455554
Q ss_pred ccHHHHHHHHHH
Q 006756 473 SNDELQEARREL 484 (632)
Q Consensus 473 sndELq~aRk~l 484 (632)
||+-+.|.+|
T Consensus 168 --dE~rDLk~El 177 (189)
T 2v71_A 168 --DEARDLRQEL 177 (189)
T ss_dssp ------------
T ss_pred --HHHHHHHHHH
Confidence 5666655554
No 32
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=77.01 E-value=2.3 Score=36.66 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=39.3
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCCCcceEEEEeCCChhchhhHH
Q 006756 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEENPTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 123 gII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~ 184 (632)
+.|-|+|.. .+...|++ |+.|.++ .|+...+..++.|++.|.|.+.-. -..|+
T Consensus 8 lfV~nLp~~--------~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~-A~~Ai 62 (115)
T 4f25_A 8 IFIKNLDKS--------IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA-AERAI 62 (115)
T ss_dssp EEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHH-HHHHH
T ss_pred EEECCCCCC--------CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHH-HHHHH
Confidence 567888753 36678999 9999875 567777777889999999987443 34444
No 33
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=77.00 E-value=4 Score=33.22 Aligned_cols=56 Identities=20% Similarity=0.126 Sum_probs=38.9
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCChhchhhHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~ 185 (632)
.++.|-|+|.. .+...|++ |+.|.++ .+....++.| ++|+|.|.|.+.-.- ..|+.
T Consensus 17 ~~l~v~nlp~~--------~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a-~~A~~ 75 (95)
T 2ywk_A 17 RTVFVGNLEAR--------VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESV-SYAIA 75 (95)
T ss_dssp GEEEEECCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHH-HHHHH
T ss_pred CEEEEECCCCC--------CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHH-HHHHH
Confidence 46778899763 36678999 9999875 4555555555 479999999876543 33443
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.91 E-value=25 Score=39.16 Aligned_cols=80 Identities=13% Similarity=0.198 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006756 249 QSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELET 328 (632)
Q Consensus 249 rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~ 328 (632)
....+.+..+.+++..+.....+++..|++.+.-|++..+.-+.-++.--.-|+.+|..-++. .-+.+||-..++.
T Consensus 81 Kdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq----~~kIQRLEvDIdi 156 (562)
T 3ghg_A 81 KDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQ----LVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 466777888888888888888899999999999999998874433333336666666654444 4455889999998
Q ss_pred HHhh
Q 006756 329 KKKK 332 (632)
Q Consensus 329 k~~e 332 (632)
|++.
T Consensus 157 qirs 160 (562)
T 3ghg_A 157 KIRS 160 (562)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 35
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=76.20 E-value=3.9 Score=34.70 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=36.2
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
-++.|-|+|. ..+...|++ |+.|.++....+.......|+|.|.|.+.-
T Consensus 9 ~~l~V~nlp~--------~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~ 58 (115)
T 3lqv_A 9 RILYIRNLPY--------KITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 58 (115)
T ss_dssp SEEEEESCCT--------TCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHH
Confidence 3567889875 346778999 999998766555544556899999998643
No 36
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.83 E-value=4.1 Score=34.45 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=40.1
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce---------eeeeccC-CC-CcceEEEEeCCChhchhhHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE---------VRIFWNE-EN-PTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k---------v~~l~~~-~G-h~G~aIV~F~~dw~Gf~nA~~ 185 (632)
+.++.|-|+|.. .+...|++ |+.|.++. ++..++. .| +.|+|.|.|.+.- .-..|+.
T Consensus 15 ~~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~-~A~~Ai~ 83 (113)
T 2cpe_A 15 NSAIYVQGLNDS--------VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP-TAKAAVE 83 (113)
T ss_dssp CCEEEEECCCTT--------CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHH-HHHHHHH
T ss_pred CCEEEEcCCCCC--------CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHH-HHHHHHH
Confidence 356778999753 36678999 99999886 7777663 23 5799999998643 3344443
No 37
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=75.68 E-value=40 Score=36.19 Aligned_cols=108 Identities=11% Similarity=0.131 Sum_probs=62.5
Q ss_pred cCCCCCCCchhhhhhhccCCCCHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH---HHHHH
Q 006756 218 ADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE---KDRLH 294 (632)
Q Consensus 218 adDy~~~g~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE---k~~lh 294 (632)
.+|+...=|-|=-|+ .++.+..+.-...|..|.+.|..-.+.-.+.-.-++.++..|+..+.+ ++...
T Consensus 41 DeDwG~kCPsGCrLq---------g~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~ 111 (390)
T 1deq_A 41 DEDWNTKCPSGCRMK---------GLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTF 111 (390)
T ss_pred hhhccCCCCccchHH---------HHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 556655444443333 334444455556666666666666665556555555556666555544 56677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Q 006756 295 YAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLD 334 (632)
Q Consensus 295 ~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~eld 334 (632)
.+|.++++.-+..-.+.+..-|..-..|+.-|+.+..++.
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiq 151 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMK 151 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7788887766655555555555555566666666555543
No 38
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.27 E-value=3.1 Score=34.79 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=41.4
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCC---CCcceEEEEeCCChhchhhHHHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEE---NPTAQAVVKFNNDWNGFMQASDFE 187 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~---Gh~G~aIV~F~~dw~Gf~nA~~le 187 (632)
|.++.|-|+|.. .+...|++ |+.|....|....++. -+.|+|.|.|.+. ..-..|+.|+
T Consensus 15 ~~~l~V~nlp~~--------~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~-~~a~~A~~l~ 77 (104)
T 1wi8_A 15 PYTAFLGNLPYD--------VTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDL-DSLLSALSLN 77 (104)
T ss_dssp CEEEEEESCCSS--------CCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSH-HHHHHHHGGG
T ss_pred CCEEEEeCCCCc--------CCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCH-HHHHHHHhcC
Confidence 467888999763 36778899 9999866666666653 3589999999754 3445555444
No 39
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.27 E-value=3.6 Score=35.75 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=39.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce--eeeeccCCC-CcceEEEEeCCChhchhhHHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE--VRIFWNEEN-PTAQAVVKFNNDWNGFMQASDF 186 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k--v~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~l 186 (632)
.++.|-|+|... +...|++ |+.|.++. +.+.....| +.|+|.|.|.+.- .-..|+.+
T Consensus 26 ~~l~V~nLp~~~--------te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~-~a~~Al~~ 86 (124)
T 1wel_A 26 FCVYLKGLPFEA--------ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEA-DYKAALCR 86 (124)
T ss_dssp CEEEEECCCTTC--------CHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSH-HHHHHHTS
T ss_pred cEEEEeCCCCCC--------CHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHH-HHHHHHHh
Confidence 577889997633 5678899 99999864 344444555 4799999998654 34455543
No 40
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.99 E-value=11 Score=30.48 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=34.0
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC--CCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE--NPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~--Gh~G~aIV~F~~d 176 (632)
-++.|-|+|. ..+...|++ |+.|.++ .+....++. -++|+|.|.|.+.
T Consensus 17 ~~l~V~nlp~--------~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 68 (94)
T 2e5h_A 17 STVYVSNLPF--------SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 68 (94)
T ss_dssp TSEEEESCCT--------TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCH
T ss_pred CEEEEECCCC--------CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 3566889975 336778999 9999876 444444433 3689999999763
No 41
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=74.71 E-value=3.1 Score=33.95 Aligned_cols=57 Identities=18% Similarity=0.078 Sum_probs=39.0
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC-C-CCcceEEEEeCCChhchhhHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE-E-NPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~-~-Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
|.++.|-|+|.. .+...|++ |+.|.++. +..+..+ . -++|+|.|.|.+.- .-..|+.
T Consensus 15 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~-~a~~Ai~ 75 (95)
T 2ek1_A 15 PTVIKVQNMPFT--------VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD-EATAAVI 75 (95)
T ss_dssp CEEEEEECCCTT--------CCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHH-HHHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHH-HHHHHHH
Confidence 567889999863 36778899 99998765 5555533 3 36799999997643 3334443
No 42
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=74.57 E-value=4.4 Score=33.85 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=36.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCCC-cceEEEEeCCC
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEENP-TAQAVVKFNND 176 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~Gh-~G~aIV~F~~d 176 (632)
+..+.|-|+|.. .+...|++ |+.|.++ .+....+..|. .|+|.|.|.+.
T Consensus 29 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 80 (107)
T 3ulh_A 29 GGKLLVSNLDFG--------VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 80 (107)
T ss_dssp SEEEEEESCCTT--------CCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCH
Confidence 356778899763 36778899 9999875 66666666664 79999999854
No 43
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=73.82 E-value=6.6 Score=32.66 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=38.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHH-HHh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASD-FEK 188 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~-lek 188 (632)
-++.|-|+|.. .+...|++ |+.|.++ .|+...++ .-+.|+|.|.|.+.-. -..|+. |+.
T Consensus 14 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~-A~~A~~~l~g 77 (106)
T 2dgp_A 14 IKLFIGQIPRN--------LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERES-ALKAQSALHE 77 (106)
T ss_dssp EEEEEESCCTT--------CCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHH-HHHHHHHHTT
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHH-HHHHHHHhcC
Confidence 45668899753 36678899 9999864 44444443 3368999999986433 344443 444
No 44
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=73.81 E-value=13 Score=31.54 Aligned_cols=50 Identities=20% Similarity=0.178 Sum_probs=34.9
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCChh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDWN 178 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~dw~ 178 (632)
.++.|-|++.. .+...|++ |+.|.++. ++...+. ..+.|++.|.|.+.-.
T Consensus 41 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 94 (118)
T 2khc_A 41 CNLFIYHLPQE--------FTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDS 94 (118)
T ss_dssp EEEEEECSCTT--------CCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHH
Confidence 45668898753 36678999 99998654 4444443 3468999999987543
No 45
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=73.33 E-value=59 Score=30.18 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=15.7
Q ss_pred HHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHH
Q 006756 442 MKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARR 482 (632)
Q Consensus 442 ~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk 482 (632)
+..+...+......+..++.-...+...-...+.++..++.
T Consensus 218 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (284)
T 1c1g_A 218 EDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED 258 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333333333333333433333
No 46
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=73.07 E-value=8.4 Score=31.77 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=39.3
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce---------eeeeccCC--CCcceEEEEeCCChhchhhHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE---------VRIFWNEE--NPTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k---------v~~l~~~~--Gh~G~aIV~F~~dw~Gf~nA~ 184 (632)
+.++.|-|++. ..+...|++ |+.|.++. ++...+.. .+.|+|.|.|.+.-.. ..|+
T Consensus 13 ~~~l~V~nLp~--------~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a-~~Ai 80 (99)
T 2la6_A 13 NNTIFVQGLGE--------NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSA-KAAI 80 (99)
T ss_dssp CSEEEEECCCS--------SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHH-HHHH
T ss_pred CCEEEEeCCCC--------CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHH-HHHH
Confidence 45677889975 346788999 99999876 55665533 3579999999865433 3444
No 47
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=72.94 E-value=28 Score=30.02 Aligned_cols=50 Identities=18% Similarity=0.140 Sum_probs=35.3
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~dw 177 (632)
+..+.|-|+|.. .+...|++ |+.|.++. ++...++ ..++|+|.|.|.+--
T Consensus 63 ~~~l~v~nlp~~--------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 116 (140)
T 2ku7_A 63 KRVLYVGGLAEE--------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAE 116 (140)
T ss_dssp CCEEEEECCCTT--------CCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHH
T ss_pred CcEEEEEeCCCC--------CCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHH
Confidence 456678899763 36678999 99998764 4444442 346899999998743
No 48
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=72.01 E-value=3.9 Score=37.11 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=41.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCC----ceeeeeccCCC-CcceEEEEeCCChhchhhHHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP----VEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDF 186 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p----~kv~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~l 186 (632)
.++.|-|+|... +...|++ |+.|.+ ..|+.++++.| ++|+|.|.|.+ -..-..|+.+
T Consensus 45 ~~lfVgnLp~~~--------te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~-~e~a~~Al~~ 107 (136)
T 2hgl_A 45 FVVKLRGLPWSC--------SVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGS-EDDVKMALKK 107 (136)
T ss_dssp CEEEEESCCTTC--------CHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSS-HHHHHHHHTT
T ss_pred CEEEEeCCCCCC--------CHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECC-HHHHHHHHhc
Confidence 457789997633 6678899 999986 57888887776 57999999985 3344455543
No 49
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=71.62 E-value=4.6 Score=32.22 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=36.0
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeee-ccC--CC-CcceEEEEeCCChh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIF-WNE--EN-PTAQAVVKFNNDWN 178 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l-~~~--~G-h~G~aIV~F~~dw~ 178 (632)
|-++.|-|+|. ..+...|++ |+.|.++.-..+ .+. .| +.|+|.|.|.+.-.
T Consensus 4 ~~~l~V~nlp~--------~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~ 59 (88)
T 4a8x_A 4 PTKVHIGRLTR--------NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDE 59 (88)
T ss_dssp CCEEEEECCCT--------TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHH
T ss_pred CCEEEEeCCCC--------CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHH
Confidence 45677889875 336778999 999987654433 333 24 78999999987544
No 50
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=71.40 E-value=4.4 Score=32.81 Aligned_cols=49 Identities=20% Similarity=0.038 Sum_probs=34.6
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCC-CCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEE-NPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~-Gh~G~aIV~F~~dw 177 (632)
-.+.|-|+|. ..+...|++ |+.|.++....+.... .+.|++.|.|.+.-
T Consensus 9 ~~l~V~nlp~--------~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~ 59 (92)
T 2dgv_A 9 CQIFVRNLPF--------DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPE 59 (92)
T ss_dssp CEEEECSCCT--------TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHH
T ss_pred cEEEEeCCCC--------CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHH
Confidence 4567889875 346788999 9999876544443333 46799999998643
No 51
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.32 E-value=7.9 Score=31.43 Aligned_cols=49 Identities=8% Similarity=0.142 Sum_probs=34.6
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~dw 177 (632)
-++.|-|+|.. .+...|++ |+.|.++. +....++ .-+.|+|.|.|.+.-
T Consensus 6 ~~l~v~nlp~~--------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~ 58 (95)
T 2dnz_A 6 SGLYVGSLHFN--------ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 58 (95)
T ss_dssp CEEEEESCCTT--------CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHH
T ss_pred cEEEEeCCCCC--------CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHH
Confidence 35678898753 46778999 99998654 4444443 346799999998743
No 52
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=70.27 E-value=4.8 Score=33.50 Aligned_cols=58 Identities=14% Similarity=0.250 Sum_probs=39.9
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCC--CCcceEEEEeCCChhchhhHHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEE--NPTAQAVVKFNNDWNGFMQASDF 186 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~--Gh~G~aIV~F~~dw~Gf~nA~~l 186 (632)
+.++.|-|+|.. .+...|++ |+.|....+....+.. -+.|+|.|.|.+ ...-..|+.|
T Consensus 15 ~~~l~V~nLp~~--------~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~l 75 (103)
T 2dng_A 15 PYTAYVGNLPFN--------TVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDE-VDSLKEALTY 75 (103)
T ss_dssp CEEEEEESCCTT--------CCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESS-HHHHHHHGGG
T ss_pred CeEEEEeCCCCC--------CCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECC-HHHHHHHHhh
Confidence 456778899763 36778999 9999666666666653 357999999985 3334444433
No 53
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.60 E-value=4.5 Score=33.20 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=35.5
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC-CC-CcceEEEEeCCCh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE-EN-PTAQAVVKFNNDW 177 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~-~G-h~G~aIV~F~~dw 177 (632)
|.++.|-|+|.. .+...|++ |+.|.++. +..+..+ .| +.|+|.|.|.+.-
T Consensus 15 ~~~l~v~nLp~~--------~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~ 68 (98)
T 2cqp_A 15 PTIIKVQNMPFT--------VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD 68 (98)
T ss_dssp SEEEEEESCCTT--------CCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHH
Confidence 456778899763 36778999 99999875 4444433 33 5799999997643
No 54
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.59 E-value=7.1 Score=32.46 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=35.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeecc---CCCCcceEEEEeCCChh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWN---EENPTAQAVVKFNNDWN 178 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~---~~Gh~G~aIV~F~~dw~ 178 (632)
.++.|-|+|.. .+...|++ |+.|.++. |+...+ ..-+.|+|.|.|.+.-.
T Consensus 16 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~ 70 (107)
T 2cph_A 16 SKILVRNIPFQ--------ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQD 70 (107)
T ss_dssp CCEEEESCCTT--------CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHH
T ss_pred CEEEEeCCCCc--------CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHH
Confidence 45678899763 36778999 99998764 444444 33468999999987443
No 55
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=69.24 E-value=5.6 Score=35.23 Aligned_cols=50 Identities=20% Similarity=0.132 Sum_probs=36.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCC-ceeeeeccCCCC-cceEEEEeCCChh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP-VEVRIFWNEENP-TAQAVVKFNNDWN 178 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p-~kv~~l~~~~Gh-~G~aIV~F~~dw~ 178 (632)
-.+.|-|+|.. .+...|++ |+.|.+ ..+....++.|. +|++.|.|.+.-.
T Consensus 96 ~~l~v~nl~~~--------~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~ 148 (175)
T 3nmr_A 96 RKLFIGMISKK--------CTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAM 148 (175)
T ss_dssp SEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHH
T ss_pred CeEEEcCCCCc--------CCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHH
Confidence 35677888753 46788999 999986 455666666664 8999999987543
No 56
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=68.93 E-value=5.3 Score=36.49 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=38.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeec-cC-CC-CcceEEEEeCCChhchhhHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFW-NE-EN-PTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~-~~-~G-h~G~aIV~F~~dw~Gf~nA~ 184 (632)
++++.|-|+|.. .+...|.+ |+.|.++....+. +. .| +.|+|+|.|.+ ...-..|+
T Consensus 72 ~~~l~V~nLp~~--------~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~Ai 131 (165)
T 1rk8_A 72 GWILFVTSIHEE--------AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYET-HKQALAAK 131 (165)
T ss_dssp CEEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESS-HHHHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECC-HHHHHHHH
Confidence 577889999863 36788999 9999876554443 32 23 57999999985 33334444
No 57
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=67.97 E-value=7.9 Score=32.97 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=37.6
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
+.++.|-|++.. .+...|++ |+.|.++. ++...+. ..+.|+|.|.|.+ -..-..|+.
T Consensus 25 ~~~lfV~nLp~~--------~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~-~~~A~~Ai~ 85 (109)
T 2rs2_A 25 GCKMFIGGLSWQ--------TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLA 85 (109)
T ss_dssp -CCEEEESCCTT--------CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESS-HHHHHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECC-HHHHHHHHH
Confidence 456778898753 36677899 99998764 4444443 3468999999975 333344443
No 58
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=67.87 E-value=42 Score=37.01 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=42.5
Q ss_pred CCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhhccCCccccc--------cccc
Q 006756 432 DEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIG--------VKRL 503 (632)
Q Consensus 432 ~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~~~~~~~~~Ig--------iKrm 503 (632)
+++-++++..+.+|.++|.+.++++. ++++....++..+..++...+.|| |++-
T Consensus 70 ~~~~~~l~~~~~~l~~~i~~le~~~~------------------~~~~~~~~~l~~iPN~~~~~vP~g~~e~~n~~v~~~ 131 (485)
T 3qne_A 70 KEDAKDLIAEKEKLSNEKKEIIEKEA------------------EADKNLRSKINQVGNIVHESVVDSQDEENNELVRTW 131 (485)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHTTSCCCCCTTSCCCSCGGGCEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCccCCEEEEEe
Confidence 34556788888888888888877774 666667777778887766555565 8888
Q ss_pred CCCC
Q 006756 504 GEID 507 (632)
Q Consensus 504 Geld 507 (632)
|+..
T Consensus 132 g~~~ 135 (485)
T 3qne_A 132 TPEN 135 (485)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 8753
No 59
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=67.64 E-value=4.9 Score=34.69 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=33.0
Q ss_pred EEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 006756 125 IVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 125 I~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~d 176 (632)
|-|++.. .+...|++ |..|.|+.-..+.- |+||+.|+|.+.
T Consensus 12 VgNL~~~--------~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~ 53 (89)
T 2wbr_A 12 LKNLTAQ--------IDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTR 53 (89)
T ss_dssp EECCCTT--------CCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSH
T ss_pred EeCCCcc--------CCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCH
Confidence 6888653 35688999 99999988877754 789999999875
No 60
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.52 E-value=10 Score=30.20 Aligned_cols=55 Identities=9% Similarity=0.035 Sum_probs=36.9
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCcee-eeeccC--CCCcceEEEEeCCChhchhhHHH
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEV-RIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv-~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
++.|-|+|.. .+...|++ |+.|.++.. ....++ ..+.|++.|.|.+.-. -..|+.
T Consensus 7 ~l~v~nlp~~--------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~-a~~A~~ 65 (85)
T 1x4e_A 7 GLYIRGLQPG--------TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSA-AQKAVT 65 (85)
T ss_dssp EEEEESCCTT--------CCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHH-HHHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHH-HHHHHH
Confidence 5668888753 36678899 999987544 444443 3468999999987433 344444
No 61
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=67.25 E-value=4.9 Score=33.24 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=35.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccC--CceeeeeccC--CCCcceEEEEeCCCh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFK--PVEVRIFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~--p~kv~~l~~~--~Gh~G~aIV~F~~dw 177 (632)
+++|-|+|.. .+...|++ |+.|. ...|+...++ ..++|+|.|.|.+--
T Consensus 3 ~i~v~nLp~~--------~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~ 55 (91)
T 2lxi_A 3 IVMLRMLPQA--------ATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQ 55 (91)
T ss_dssp EEEEETCCSS--------CCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHH
Confidence 4678898763 36788999 99886 3556666654 357799999998643
No 62
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=66.84 E-value=7.9 Score=30.52 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=34.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~dw 177 (632)
+++.|-|+|.. .+...|++ |+.|.++. +....++ ..++|+|.|.|.+.-
T Consensus 2 ~~l~V~nlp~~--------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 54 (83)
T 3md1_A 2 FNLFVGDLNVN--------VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQD 54 (83)
T ss_dssp EEEEEECCCTT--------CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHH
T ss_pred eEEEEeCCCCC--------CCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHH
Confidence 35678888753 36778899 99998754 4444442 345899999998643
No 63
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.84 E-value=7 Score=32.27 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=34.0
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~d 176 (632)
.++.|-|+|.. .+...|++ |+.|.++ .+....++ ..+.|+|.|.|.+-
T Consensus 13 ~~l~v~nLp~~--------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 64 (102)
T 1x5s_A 13 GKLFVGGLSFD--------TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENI 64 (102)
T ss_dssp SEEEEESCCTT--------CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSH
T ss_pred CEEEEECCCCC--------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 46778899763 36778899 9999876 44444443 23689999999763
No 64
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=66.75 E-value=8.6 Score=31.50 Aligned_cols=48 Identities=10% Similarity=0.132 Sum_probs=33.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~dw 177 (632)
++.|-|+|. ..+...|++ |+.|.++. +....+. ..+.|+|.|.|.+.-
T Consensus 4 ~l~V~nLp~--------~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 55 (96)
T 2x1f_A 4 VVYLGSIPY--------DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLE 55 (96)
T ss_dssp EEEEESCCT--------TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHH
T ss_pred EEEEECCCC--------CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHH
Confidence 456778875 346788999 99998754 4444443 345899999998643
No 65
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.72 E-value=7.5 Score=32.22 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=34.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCCCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~Gh~G~aIV~F~~d 176 (632)
-.+.|-|+|.. .+...|++ |+.|.++ .+....+..-+.|+|.|.|.+-
T Consensus 16 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~ 65 (103)
T 2d9p_A 16 VNLYVKNLDDG--------IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSP 65 (103)
T ss_dssp CCEEEECCCTT--------CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCH
Confidence 45678899753 36788999 9999875 4455545334679999999853
No 66
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.69 E-value=7.4 Score=30.23 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=36.3
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
++.|-|+|.. .+...|++ |+.|.++. +....++ ..+.|+|.|.|.+.- .-..|+.
T Consensus 2 ~l~v~nlp~~--------~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~a~~ 60 (77)
T 1uaw_A 2 KMFIGGLSWQ--------TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA-GVDKVLA 60 (77)
T ss_dssp CEEEESCCSS--------CCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTT-HHHHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHH-HHHHHHH
Confidence 4567888753 36677899 99998654 4444443 346899999998643 3344443
No 67
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.48 E-value=5.8 Score=33.97 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=35.8
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCC-----CCcceEEEEeCCCh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEE-----NPTAQAVVKFNNDW 177 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~-----Gh~G~aIV~F~~dw 177 (632)
.+.|-|+|.. .+...|++ |+.|.++.+..+.... -+.|+|.|.|.+.-
T Consensus 10 ~lfVgnLp~~--------~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~ 63 (114)
T 2dnl_A 10 KVFVGGLPPD--------IDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEES 63 (114)
T ss_dssp CEEEECCCTT--------CCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHH
T ss_pred EEEEcCCCCC--------CCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHH
Confidence 3557888753 36778999 9999998866666543 46899999998743
No 68
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.89 E-value=9.7 Score=30.95 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=34.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-ee-eeecc-C-CCCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EV-RIFWN-E-ENPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv-~~l~~-~-~Gh~G~aIV~F~~d 176 (632)
.++.|-|+|.. .+...|++ |+.|.++ .+ +...+ . ..+.|+|.|.|.+.
T Consensus 6 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~ 58 (96)
T 1x5t_A 6 SGIFIGNLDPE--------IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 58 (96)
T ss_dssp CEEEEECCCTT--------CCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCH
Confidence 45678898763 36788999 9999876 44 45554 2 33689999999874
No 69
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.78 E-value=4.7 Score=34.52 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=37.2
Q ss_pred ceEEEEecccccc---CCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChh
Q 006756 121 WMGIIVNIVMETK---DRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWN 178 (632)
Q Consensus 121 wmgII~Ni~te~~---dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~ 178 (632)
.+++|.|+....+ |..+.......|++ |+.|.++.-..+... ...|++.|.|.+.-.
T Consensus 16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~-~~~G~afV~f~~~~~ 76 (112)
T 2dit_A 16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR-HPDGVASVSFRDPEE 76 (112)
T ss_dssp CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT-CTTCEEEEECSCHHH
T ss_pred eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC-CCCEEEEEEECCHHH
Confidence 5688889855321 22222333467888 999987655555433 478999999986544
No 70
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.68 E-value=12 Score=30.77 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=37.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHHH
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASDF 186 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~l 186 (632)
.+.|-|+|.. .+...|++ |+.|.++ .+....++ ..+.|+|.|.|.+. ..-..|+.+
T Consensus 12 ~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~~ 71 (99)
T 2dgs_A 12 KIFVGGIPHN--------CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE-QSVDQAVNM 71 (99)
T ss_dssp EEEEESCCSS--------CCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSH-HHHHHHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCH-HHHHHHHHh
Confidence 4567898753 36778999 9999876 44444443 33789999999763 334455544
No 71
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=65.61 E-value=7.5 Score=32.15 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=38.4
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCChhchhhHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~ 185 (632)
|.++.|-|+|.. .+...|++ |+.|.++ .++...+..| +.|+|.|.|.+.-. -..|+.
T Consensus 9 ~~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~-a~~Ai~ 68 (102)
T 2xs2_A 9 PNTVFVGGIDVR--------MDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD-VQKIVE 68 (102)
T ss_dssp EEEEEEECCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCC-HHHHTT
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHH-HHHHHh
Confidence 356778888753 36778899 9999875 4555555544 57999999986443 244443
No 72
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.45 E-value=6.7 Score=32.40 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=36.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCC-CcceEEEEeCCChhchhhHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~ 185 (632)
+-++.|-|+|.. .+...|++ |+.|.+++ .+....| +.|+|.|.|.+.- .-..|+.
T Consensus 15 ~~~l~V~nLp~~--------~t~~~l~~~F~~~g~v~--~~~~~~g~~~g~afV~f~~~~-~A~~A~~ 71 (101)
T 2fc9_A 15 SKTLVLSNLSYS--------ATEETLQEVFEKATFIK--VPQNQNGKSKGYAFIEFASFE-DAKEALN 71 (101)
T ss_dssp CSEEEEESCCTT--------CCHHHHHHHCSSCSEEE--CCBCSSSCBCSEEEEECSSHH-HHHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhCCEEE--EEECCCCCEeeEEEEEECCHH-HHHHHHH
Confidence 455678899763 36778899 99997663 4444444 6799999998633 3344443
No 73
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.42 E-value=6.8 Score=31.59 Aligned_cols=46 Identities=17% Similarity=0.047 Sum_probs=32.7
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
++.|-|+|.. .+...|++ |+.|.++.-..+.. .+.|+|.|.|.+.-
T Consensus 7 ~l~V~nLp~~--------~te~~l~~~F~~~G~i~~v~i~~--~~~g~afV~f~~~~ 53 (88)
T 1wf0_A 7 GVFVGRCTGD--------MTEDELREFFSQYGDVMDVFIPK--PFRAFAFVTFADDQ 53 (88)
T ss_dssp EEEEESCCSS--------SCHHHHHHHSTTTSCCCEEECCS--SCCSCCEEECSCHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHHcCCeeEEEEec--CCCCEEEEEECCHH
Confidence 3557788753 36778999 99998755444432 37899999999844
No 74
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.99 E-value=9.5 Score=32.19 Aligned_cols=53 Identities=15% Similarity=0.020 Sum_probs=36.4
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
+..+.|-|+|.. .+...|++ |+.|.++.-..+... |+|.|.|.+ ...-..|+.
T Consensus 15 ~~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~-~~~a~~Ai~ 68 (108)
T 1x4c_A 15 ENRVVVSGLPPS--------GSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVR-KEDMTYAVR 68 (108)
T ss_dssp CCEEEEESCCSS--------CCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESS-HHHHHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECC-HHHHHHHHH
Confidence 467789999863 36788999 999986544444322 899999987 333445554
No 75
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.85 E-value=7.9 Score=32.09 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=35.3
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCCh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw 177 (632)
+.++.|-|+|.. .+...|++ |+.|.++ .+....++ ..+.|+|.|.|.+.-
T Consensus 15 ~~~l~V~nlp~~--------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 68 (103)
T 2cq0_A 15 NATIRVTNLSED--------TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRE 68 (103)
T ss_dssp SEEEEEESCCTT--------CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHH
Confidence 355678899763 36778899 9999875 44444443 346799999998643
No 76
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.43 E-value=19 Score=30.33 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=40.6
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC--CCcceEEEEeCCChhchhhHHHHHh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE--NPTAQAVVKFNNDWNGFMQASDFEK 188 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~--Gh~G~aIV~F~~dw~Gf~nA~~lek 188 (632)
..++.|-|++.. .+...|++ |+.|.++ .|....+.. -+.|+|.|.|.+ ...-..|+.|+.
T Consensus 25 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~l~g 88 (114)
T 2cq4_A 25 ARTVFCMQLAAR--------IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE-IQSVPLAIGLTG 88 (114)
T ss_dssp HTEEEEESCCTT--------CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESC-GGGHHHHHHHTT
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCc-HHHHHHHHHcCC
Confidence 456778999753 36678899 9999865 455555543 468999999965 444555665544
No 77
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=64.16 E-value=8.2 Score=32.63 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=35.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc---eeeeeccCC--CCcceEEEEeCCChh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV---EVRIFWNEE--NPTAQAVVKFNNDWN 178 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~---kv~~l~~~~--Gh~G~aIV~F~~dw~ 178 (632)
+++|-|+|... +...|++ |+.|.+. .|+...++. -++||+.|.|.+.-.
T Consensus 11 tlfV~nL~~~~--------tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~ 65 (95)
T 2lkz_A 11 TIILRNIAPHT--------VVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMD 65 (95)
T ss_dssp EEEEESCCTTC--------CHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHH
T ss_pred EEEEeCCCCcC--------CHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHH
Confidence 46788997643 6778899 9999854 455555543 367999999987654
No 78
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=64.11 E-value=13 Score=31.86 Aligned_cols=53 Identities=15% Similarity=0.012 Sum_probs=36.3
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
++.+.|-|+|... +...|++ |+.|.++....+..+ |+|.|.|.+ -..-..|+.
T Consensus 16 ~~~l~V~nLp~~~--------t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~-~~~a~~Ai~ 69 (115)
T 3beg_B 16 ENRVVVSGLPPSG--------SWQDLKDHMREAGDVCYADVYRD----GTGVVEFVR-KEDMTYAVR 69 (115)
T ss_dssp -CCEEEEECCSSC--------CTTHHHHHHGGGSCEEEEEECTT----SEEEEEESS-HHHHHHHHH
T ss_pred CcEEEEeCCCCCC--------CHHHHHHHHHhcCCeEEEEEecC----CEEEEEECC-HHHHHHHHH
Confidence 4678899998633 5677889 999986554444332 899999987 444455555
No 79
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=64.09 E-value=9.8 Score=31.88 Aligned_cols=49 Identities=10% Similarity=0.194 Sum_probs=34.4
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeee-ccC--CCCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIF-WNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l-~~~--~Gh~G~aIV~F~~dw 177 (632)
.++.|-|+|. ..+...|++ |+.|.++....+ .+. ..+.|+|.|.|.+.-
T Consensus 27 ~~l~V~nlp~--------~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 79 (110)
T 1oo0_B 27 WILFVTSIHE--------EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK 79 (110)
T ss_dssp EEEEEESCCT--------TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHH
Confidence 4567889975 336778999 999987644444 433 345799999998644
No 80
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.01 E-value=10 Score=31.38 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=35.5
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCChh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDWN 178 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~dw~ 178 (632)
+-++.|-|+|.. .+...|++ |+.|.++. +....++ .-+.|+|.|.|.+.-.
T Consensus 13 ~~~l~V~nLp~~--------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 67 (103)
T 2dnm_A 13 MITLKVDNLTYR--------TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRD 67 (103)
T ss_dssp CCEEEEESCCTT--------CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSH
T ss_pred CeEEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHH
Confidence 346778899763 36778999 99998754 4444443 3367999999987543
No 81
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=63.86 E-value=5.7 Score=32.58 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=33.9
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCC-----CCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEE-----NPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~~-----Gh~G~aIV~F~~d 176 (632)
-++.|-|+|.. .+...|++ |+.|.++. +....++. -+.|+|.|.|.+.
T Consensus 6 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~ 60 (98)
T 2cpf_A 6 SGLFIKNLNFS--------TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKP 60 (98)
T ss_dssp CCEEEESCCTT--------CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCH
Confidence 35678888753 36788999 99998764 44444433 3679999999863
No 82
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=63.76 E-value=9.2 Score=30.77 Aligned_cols=47 Identities=19% Similarity=0.387 Sum_probs=33.9
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCCh
Q 006756 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 123 gII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw 177 (632)
+.|-|+|.. .+...|++ |+.|.++ .+....++ ..+.|+|.|.|.+.-
T Consensus 4 l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 54 (90)
T 2ki2_A 4 IYVGNLVYS--------ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES 54 (90)
T ss_dssp EEEEEECTT--------SSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH
T ss_pred EEECCCCCC--------CCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 567788653 36778889 9999865 45555554 346899999998765
No 83
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=63.41 E-value=8.8 Score=31.90 Aligned_cols=49 Identities=10% Similarity=0.256 Sum_probs=34.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~dw 177 (632)
.++.|-|+|.. .+...|++ |+.|.++. +....+. ..+.|+|.|.|.+.-
T Consensus 24 ~~l~V~nlp~~--------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 76 (106)
T 1p27_B 24 WILFVTGVHEE--------ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYK 76 (106)
T ss_dssp EEEEEECCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHH
Confidence 46778899763 36678999 99998764 4444443 345799999998743
No 84
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.16 E-value=10 Score=31.44 Aligned_cols=50 Identities=14% Similarity=0.025 Sum_probs=35.4
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCCh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw 177 (632)
+.++.|-|+|.. .+...|++ |+.|.++ .+....++ .-+.|+|.|.|.+.-
T Consensus 15 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 68 (105)
T 1x5u_A 15 DATVYVGGLDEK--------VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 68 (105)
T ss_dssp TTEEEEECCCTT--------CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHH
Confidence 456778899763 36678899 9999875 44444443 346799999997743
No 85
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=63.07 E-value=11 Score=32.33 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=38.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCC-ceeeeeccCCC-CcceEEEEeCCChhchhhHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP-VEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p-~kv~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~ 185 (632)
.++.|-|++. ..+...|++ |+.|.+ ..+....+..| +.|+|.|.|.+-- .-..|+.
T Consensus 36 ~~l~V~nlp~--------~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~-~A~~Ai~ 94 (124)
T 2kt5_A 36 AKLLVSNLDF--------GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRA-DALKAMK 94 (124)
T ss_dssp EEEEEESCCS--------SCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHH-HHHHHHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHH-HHHHHHH
Confidence 4677889875 336778999 999985 45555666555 6799999997643 3334443
No 86
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.95 E-value=9.6 Score=31.41 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=34.4
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~dw 177 (632)
.++.|-|+|.. .+...|++ |+.|.++. +....++ ..+.|+|.|.|.+.-
T Consensus 13 ~~l~V~nLp~~--------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 65 (102)
T 2cqb_A 13 RVLYVGGLAEE--------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAE 65 (102)
T ss_dssp SCEEEESCCSS--------CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHH
Confidence 45668899763 36788999 99998764 4444432 347899999998643
No 87
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=62.51 E-value=8.3 Score=32.84 Aligned_cols=50 Identities=12% Similarity=0.241 Sum_probs=35.1
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC--CCcceEEEEeCCCh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE--NPTAQAVVKFNNDW 177 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~--Gh~G~aIV~F~~dw 177 (632)
|-.+.|-|+|. ..+...|++ |+.|.++ .+....++. .+.|+|.|.|.+.-
T Consensus 26 ~~~l~V~nLp~--------~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 79 (108)
T 2jrs_A 26 PMRLYVGSLHF--------NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 79 (108)
T ss_dssp CEEEEEECCCS--------SCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHH
T ss_pred CCEEEEeCCCC--------CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 34566889875 346788999 9999875 444444432 35799999998643
No 88
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=62.29 E-value=7.9 Score=37.78 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=38.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCChhch
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNNDWNGF 180 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~G-h~G~aIV~F~~dw~Gf 180 (632)
.++.|-|+|.. .+...|++ |+.|.++ .|..+.+..| ++|++.|.|.+.-..-
T Consensus 97 ~~l~v~nl~~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~ 151 (261)
T 3sde_A 97 AALTVKNLSPV--------VSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPAR 151 (261)
T ss_dssp SEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHH
T ss_pred CcccccCCCCC--------CCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHH
Confidence 36778898753 36778999 9999875 6666666666 5799999998764443
No 89
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=62.21 E-value=12 Score=32.62 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=36.8
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCC-CcceEEEEeCCChhchhhHH
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEEN-PTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~ 184 (632)
++.|-|+|.. .+...|++ |+.|.++. +....++.| +.|+|.|.|.+.-. -..|+
T Consensus 2 ~l~V~nlp~~--------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~-a~~A~ 58 (166)
T 3md3_A 2 VLYVGNLDKA--------ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHD-ANIAL 58 (166)
T ss_dssp EEEEEEEETT--------CCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHH-HHHHH
T ss_pred EEEECCCCCc--------CCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHH-HHHHH
Confidence 3568888763 36778999 99998755 555556544 67999999976433 33444
No 90
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.10 E-value=13 Score=31.58 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=33.9
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~d 176 (632)
-++.|-|+|.. .+...|++ |+.|.++. ++.+.++ .-+.|+|.|.|.+.
T Consensus 18 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 69 (116)
T 2cqd_A 18 TKIFVGGLPYH--------TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 69 (116)
T ss_dssp SEEEEECCCSS--------CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCH
Confidence 45668899753 36778999 99998764 4444443 34789999999753
No 91
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.91 E-value=90 Score=28.09 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=2.6
Q ss_pred hhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006756 266 NEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQR 306 (632)
Q Consensus 266 nk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~ 306 (632)
+++..++|.-|......|+........-..+...||..+.+
T Consensus 5 ~knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr 45 (131)
T 3tnu_A 5 EKNRKDAEEWFFTKTEELNREVATNSELVQSGKSEISELRR 45 (131)
T ss_dssp ------------------------------------CHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44556777777777777766665554445555666655544
No 92
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=61.75 E-value=11 Score=29.82 Aligned_cols=54 Identities=11% Similarity=0.205 Sum_probs=33.9
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCC-CCcceEEEEeCCCh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEE-NPTAQAVVKFNNDW 177 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~-Gh~G~aIV~F~~dw 177 (632)
++.|-|+|...++. ...+...|++ |+.|.++.-..+.... .+.|+|.|.|.+.-
T Consensus 3 ~l~V~nLp~~~~~~--~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~ 58 (81)
T 2krb_A 3 VIVVDNVPQVGPDR--LEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPA 58 (81)
T ss_dssp EEEEESCCCCCTTT--HHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHH
T ss_pred EEEEeCCCCCcHHH--HHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHH
Confidence 46688887532111 0113477888 9999986554443333 46799999998643
No 93
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=61.19 E-value=12 Score=31.20 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=34.7
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCC--CCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEE--NPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~~--Gh~G~aIV~F~~dw 177 (632)
.++.|-|+|.. .+...|++ |+.|.++. ++..+++. -+.|+|.|.|.+.-
T Consensus 16 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 68 (111)
T 1x4h_A 16 KTVFIRNLSFD--------SEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 68 (111)
T ss_dssp CCEEEESCCTT--------CCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHH
T ss_pred CEEEEECCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHH
Confidence 45678899753 36778999 99998754 44444433 36899999998644
No 94
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=61.08 E-value=12 Score=29.78 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=33.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~d 176 (632)
.++.|-|+|. ..+...|++ |+.|.++ .+....++ ..+.|+|.|.|.+.
T Consensus 7 ~~l~v~nlp~--------~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 58 (87)
T 3bs9_A 7 FHVFVGDLSP--------EITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 58 (87)
T ss_dssp EEEEEESCCT--------TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred eEEEEeCCCC--------CCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCH
Confidence 4567888875 346788999 9999865 44444442 34679999999763
No 95
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.92 E-value=13 Score=31.59 Aligned_cols=56 Identities=9% Similarity=-0.044 Sum_probs=38.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCC-CcceEEEEeCCChhchhhHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEEN-PTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~ 185 (632)
-++.|-|+|... +...|++ |+.|.++. |+...++.| +.|++.|.|.+. ..-..|+.
T Consensus 12 ~~lfV~~Lp~~~--------te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~-e~a~~Ai~ 70 (103)
T 1s79_A 12 RSVYIKGFPTDA--------TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSI-ESAKKFVE 70 (103)
T ss_dssp GCEEEECCCTTC--------CHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSH-HHHHHHHT
T ss_pred CEEEEECCCCCC--------CHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCH-HHHHHHHH
Confidence 456778887633 6778999 99998754 555555444 789999999753 33344444
No 96
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=60.85 E-value=13 Score=29.71 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=37.8
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
+-.+.|-|+|.. .+...|++ |+.|.++ .+....++ .-+.|++.|.|.+.-. -..|+.
T Consensus 11 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~-a~~A~~ 71 (87)
T 3s7r_A 11 AGKMFVGGLSWD--------TSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS-VEKVLD 71 (87)
T ss_dssp TTEEEEECCCTT--------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHH-HHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHH-HHHHHH
Confidence 346678899753 36778999 9999864 45555543 2357999999986543 233443
No 97
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=60.81 E-value=12 Score=32.04 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=40.9
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASDFE 187 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~le 187 (632)
+.++.|-|++. ..+...|++ |+.|.++ .|..++++ ..+.|++.|.|.+.-. -..|+.|+
T Consensus 36 ~~~l~V~nlp~--------~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-a~~A~~l~ 98 (124)
T 2jwn_A 36 KRSVYVGNVDY--------GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNS-VDAAVAMD 98 (124)
T ss_dssp HTEEEEEEECT--------TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHH-HHHHHTTT
T ss_pred CCEEEEeCCCC--------CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHH-HHHHHhcC
Confidence 46778889975 336778999 9999875 46666653 3468999999977543 34455443
No 98
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=60.70 E-value=6.5 Score=30.50 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=35.6
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 006756 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 123 gII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
+.|-|+|.. .+...|++ |+.|.++. +....++ .-++|+|.|.|.+.- .-..|+.
T Consensus 2 l~v~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~Ai~ 59 (75)
T 1iqt_A 2 IFVGGLSPD--------TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE-PVKKIME 59 (75)
T ss_dssp EEESCCCSS--------CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSH-HHHHHHT
T ss_pred EEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHH-HHHHHHH
Confidence 456677653 36778999 99998754 4333433 346899999998754 3455554
No 99
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=60.46 E-value=8.9 Score=31.63 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=37.1
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH-HHhh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD-FEKA 189 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~-lek~ 189 (632)
++.|-|+|. ..+...|++ |+.|.++....+... +.|+|.|.|.+.- .-..|+. |+.+
T Consensus 2 ~l~V~nLp~--------~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~-~a~~A~~~l~g~ 60 (101)
T 2hvz_A 2 KVYVGNLGT--------GAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPR-DAEDAVRGLDGK 60 (101)
T ss_dssp EEEEECCCS--------SCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHH-HHHHHHHHHHHS
T ss_pred EEEEeCCCC--------CCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHH-HHHHHHHHHCCC
Confidence 356778865 336778999 999987544433322 8899999997644 3344544 4443
No 100
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=60.39 E-value=8.3 Score=32.08 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=37.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccC---CCCcceEEEEeCCChhchhhHHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNE---ENPTAQAVVKFNNDWNGFMQASDF 186 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~---~Gh~G~aIV~F~~dw~Gf~nA~~l 186 (632)
+.++.|-|++.. .+...|++ |+.|....+....+. .-+.|+|.|.|.+ ...-..|+.|
T Consensus 19 ~~~l~V~nLp~~--------~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~-~~~a~~Ai~l 80 (100)
T 2j76_E 19 PYTAFLGNLPYD--------VTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFED-LDSLLSALSL 80 (100)
T ss_dssp -CEEEESCCSSC--------CSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECC-HHHHHHHHHT
T ss_pred CcEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECC-HHHHHHHHhc
Confidence 355668888753 35667888 999985555555543 2368999999975 4444555544
No 101
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.31 E-value=10 Score=30.73 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=34.6
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC--CCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE--NPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~--Gh~G~aIV~F~~dw 177 (632)
.++.|-|+|.. .+...|++ |+.|.++ .+...+++. -++|+|.|.|.+--
T Consensus 16 ~~l~v~nlp~~--------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~ 68 (95)
T 2cqc_A 16 CCLGVFGLSLY--------TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 68 (95)
T ss_dssp GCEEEESCCSS--------CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHH
T ss_pred CEEEEECCCCC--------CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHH
Confidence 35668898763 36678999 9999875 455555443 45799999998743
No 102
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=59.34 E-value=14 Score=30.57 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=35.5
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCCh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNNDW 177 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~G-h~G~aIV~F~~dw 177 (632)
+.++.|-|+|.. .+...|++ |+.|.++ .+....++.| +.|+|.|.|.+.-
T Consensus 15 ~~~l~v~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 67 (105)
T 2dnh_A 15 DRKLFVGMLNKQ--------QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHT 67 (105)
T ss_dssp CCEEEEESCCTT--------CCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHH
Confidence 456778899753 36678899 9999865 4444555544 4799999998743
No 103
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=59.13 E-value=96 Score=33.56 Aligned_cols=75 Identities=21% Similarity=0.305 Sum_probs=39.1
Q ss_pred hhhhhhhccCCCCHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhh-----------hhHHHHhHHHHHHHH--
Q 006756 227 IGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNE-----------TTMSLSRMLEEKDRL-- 293 (632)
Q Consensus 227 iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne-----------~t~sL~r~meEk~~l-- 293 (632)
|-.||.|+ .-=|....+....+|..++|.=.....+++.|..+++. .+..=.+||+|+.++
T Consensus 25 l~d~L~ky------e~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~ 98 (411)
T 3ghg_C 25 IADFLSTY------QTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEA 98 (411)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh------ccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 66777776 22233344444455555555555555556666555433 233344577776543
Q ss_pred -HHHHHHHHHHHHHH
Q 006756 294 -HYAFVEETRKMQRL 307 (632)
Q Consensus 294 -h~~yneE~~kmQ~~ 307 (632)
+..+...|+.+|..
T Consensus 99 ~~~~~~~~i~~l~~~ 113 (411)
T 3ghg_C 99 SILTHDSSIRYLQEI 113 (411)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHH
Confidence 44445555555543
No 104
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.83 E-value=13 Score=31.48 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=38.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASDF 186 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~l 186 (632)
+-++.|-|+|.. .+...|++ |+.|.++ .|....++ .-+.|+|.|.|.+ -..-..|+..
T Consensus 27 ~~~l~V~nLp~~--------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~Ai~~ 88 (116)
T 1x4b_A 27 FRKLFIGGLSFE--------TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS-MAEVDAAMAA 88 (116)
T ss_dssp HTEEEEECCTTC--------CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSS-HHHHHHHHTS
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCC-HHHHHHHHHh
Confidence 356778899763 36678899 9999865 55555543 3468999999985 3333444443
No 105
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.50 E-value=17 Score=29.78 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=34.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~dw 177 (632)
-++.|-|+|.. .+...|++ |+.|.++. +....++ .-+.|+|.|.|.+.-
T Consensus 9 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 61 (99)
T 1whw_A 9 GRLFVRNLSYT--------SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPE 61 (99)
T ss_dssp EEEEEECCCTT--------CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHH
Confidence 35678898753 36678999 99998754 4444443 336799999998743
No 106
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.45 E-value=12 Score=30.95 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=36.9
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
-.+.|-|+|.. .+...|++ |+.|.++ .+....++ .-+.|+|.|.|.+. ..-..|+.
T Consensus 16 ~~l~v~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~ 75 (103)
T 2cqg_A 16 SDLIVLGLPWK--------TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY-ETQVKVMS 75 (103)
T ss_dssp CCEEEESCCSS--------CCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSH-HHHHHHHH
T ss_pred CEEEEEcCCCc--------CCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCH-HHHHHHHH
Confidence 35668898753 36677899 9999875 45555554 34579999999763 33334443
No 107
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=58.20 E-value=14 Score=28.59 Aligned_cols=54 Identities=11% Similarity=0.231 Sum_probs=35.5
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 006756 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 123 gII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
+.|-|+|.. .+...|++ |+.|.++ .+....++ .-++|+|.|.|.+. ..-..|+.
T Consensus 2 l~v~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~a~~ 59 (75)
T 2mss_A 2 IFVGGLSVN--------TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE-DIVEKVCE 59 (75)
T ss_dssp EEEECCCSS--------CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCH-HHHHHHHS
T ss_pred EEEecCCCC--------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCH-HHHHHHHH
Confidence 356777653 36788999 9999875 44444443 33679999999875 33344444
No 108
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.20 E-value=10 Score=31.31 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=35.6
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
-++.|-|+|.. .+...|++ |+.|. .+..+... ..+.|+|.|.|.+. ..-..|+.
T Consensus 16 ~~l~V~nLp~~--------~t~~~l~~~F~~~~--~~~~~~~~~~~~~~g~afV~f~~~-~~A~~A~~ 72 (102)
T 2fc8_A 16 KTLFVKGLSED--------TTEETLKESFDGSV--RARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 72 (102)
T ss_dssp SSEEEECCCTT--------CCHHHHHHTSTTCS--EEEEEECSSSCSEEEEEEEECSSH-HHHHHHHH
T ss_pred CEEEEeCCCCc--------cCHHHHHHHhcCCe--EEEEEecCCCCCcCcEEEEEECCH-HHHHHHHH
Confidence 34567898753 36678899 99884 56666543 34679999999863 33344443
No 109
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.01 E-value=13 Score=31.36 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=34.6
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCC
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNND 176 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~G-h~G~aIV~F~~d 176 (632)
++.|-|++.. .+...|++ |+.|.++ .+....+..| +.|++.|.|.+.
T Consensus 17 ~l~V~nlp~~--------~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~ 66 (114)
T 2do0_A 17 TVFVANLDYK--------VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQS 66 (114)
T ss_dssp CEEEESCCTT--------CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCH
Confidence 5668899753 36778899 9999864 4555666555 479999999863
No 110
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=57.87 E-value=14 Score=29.23 Aligned_cols=49 Identities=18% Similarity=0.079 Sum_probs=33.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceee-eeccC--CCCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVR-IFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~-~l~~~--~Gh~G~aIV~F~~dw 177 (632)
-++.|-|+|.. .+...|++ |+.|.++.-. ...++ ..+.|+|.|.|.+.-
T Consensus 8 ~~l~V~nl~~~--------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 60 (85)
T 3mdf_A 8 RVLYVGGLAEE--------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAE 60 (85)
T ss_dssp SEEEEECCCTT--------CCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHH
T ss_pred CEEEEECCCCC--------CCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHH
Confidence 45678898753 36688999 9999865443 33432 236899999998743
No 111
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.61 E-value=1.9e+02 Score=30.59 Aligned_cols=21 Identities=5% Similarity=0.017 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006756 295 YAFVEETRKMQRLARDNVRRI 315 (632)
Q Consensus 295 ~~yneE~~kmQ~~ar~~~~rI 315 (632)
..|..|+.-+-+.-+++.-++
T Consensus 324 ~eF~~Eve~L~~i~HrNLV~L 344 (487)
T 3oja_A 324 ETERLECERENQARQREIDAL 344 (487)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhH
Confidence 355566665555555555444
No 112
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=57.33 E-value=16 Score=29.13 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=37.9
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHHHH
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASDFE 187 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~le 187 (632)
++.|-|+|.. .+...|++ |+.|.++ .+....++ ..+.|+|.|.|.+.- .-..|+.++
T Consensus 8 ~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~a~~~~ 68 (89)
T 3ucg_A 8 SIYVGNVDYG--------ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE-SVRTSLALD 68 (89)
T ss_dssp EEEEESCCTT--------CCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTH-HHHHHGGGT
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHH-HHHHHHhcC
Confidence 5677888753 36678999 9999864 45455443 346899999999754 334444433
No 113
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.73 E-value=17 Score=29.79 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=35.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~G-h~G~aIV~F~~dw 177 (632)
-++.|-|+|.. .+...|++ |+.|.++ .++...+..| +.|+|.|.|.+.-
T Consensus 18 ~~l~v~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 69 (100)
T 2do4_A 18 HKLFISGLPFS--------CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENES 69 (100)
T ss_dssp SCEEEESCCTT--------CCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHH
Confidence 45678899763 36778999 9999875 4555555544 4699999997643
No 114
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=56.63 E-value=14 Score=31.15 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=34.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~d 176 (632)
.++.|-|+|.. .+...|++ |+.|.++. +....++ ..+.|+|.|.|.+-
T Consensus 16 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (115)
T 2dgo_A 16 FHVFVGDLSPE--------ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 67 (115)
T ss_dssp EEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCH
Confidence 45668899753 36778999 99998654 5555553 34579999999764
No 115
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.56 E-value=15 Score=29.58 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=31.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~d 176 (632)
++.|-|+|.. .+...|++ |+.|.++....+. .|+|.|.|.+.
T Consensus 10 ~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~ 52 (90)
T 2dnq_A 10 KLFIGNLPRE--------ATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDK 52 (90)
T ss_dssp EEEEESCCSS--------CCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCH
Confidence 5667888763 36778999 9999876555553 68999999863
No 116
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=56.43 E-value=14 Score=30.95 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=34.5
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~dw 177 (632)
.+.|-|+|.. .+...|++ |+.|.++. ++...++ .-+.|+|.|.|.+.-
T Consensus 21 ~lfV~nLp~~--------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~ 72 (99)
T 4fxv_A 21 NLIVNYLPQN--------MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAK 72 (99)
T ss_dssp EEEEESCCTT--------CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHH
Confidence 4668899863 36788999 99998754 5555544 336799999998643
No 117
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=56.42 E-value=6.9 Score=31.96 Aligned_cols=47 Identities=13% Similarity=0.076 Sum_probs=33.0
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
-++.|-|+|. ..+...|++ |+.|.++.+. .....+.|+|.|.|.+.-
T Consensus 17 ~~l~V~nL~~--------~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~ 64 (96)
T 1fjc_A 17 RTLLAKNLSF--------NITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEA 64 (96)
T ss_dssp GEEEEESCCS--------SCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHH
Confidence 3456788875 336778899 9999665544 334456899999998643
No 118
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=56.40 E-value=11 Score=32.93 Aligned_cols=47 Identities=11% Similarity=-0.067 Sum_probs=33.8
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccC-CceeeeeccCCCCcceEEEEeCC
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFK-PVEVRIFWNEENPTAQAVVKFNN 175 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~-p~kv~~l~~~~Gh~G~aIV~F~~ 175 (632)
++.+.|-|+|.. .+...|++ |+.|. ++....+. .....|++.|.|.+
T Consensus 28 ~~~l~VgnLp~~--------~te~dL~~~F~~~G~~v~~v~i~-~~~~rGfaFV~F~~ 76 (111)
T 2jvr_A 28 RYRITMKNLPEG--------CSWQDLKDLARENSLETTFSSVN-TRDFDGTGALEFPS 76 (111)
T ss_dssp CEEEEEECSSCC--------CCHHHHHHHHHHHTCCCSEEECS-SCSSSCCEEEEESS
T ss_pred CCEEEEECCCCC--------CCHHHHHHHHHHhCCeeEEEEEE-cCCCCCEEEEEECC
Confidence 467889999763 36788999 99997 44433332 23478999999986
No 119
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.02 E-value=16 Score=29.90 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=35.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
-++.|-|+|.. .+...|++ |+.|.++.-..+.. + .|+|.|.|.+. ..-..|+.
T Consensus 18 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~v~~v~~~~--~-~g~afV~f~~~-~~A~~A~~ 71 (97)
T 1why_A 18 TRLWVGGLGPN--------TSLAALAREFDRFGSIRTIDHVK--G-DSFAYIQYESL-DAAQAACA 71 (97)
T ss_dssp SCEEEECCCSS--------CCHHHHHHHHHTTSCEEEEEECS--S-SCCEEEEESSH-HHHHHHHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeeEEEEeC--C-CCEEEEEECCH-HHHHHHHH
Confidence 45668898753 36788899 99999765544432 2 78999999764 33344444
No 120
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.21 E-value=1.2e+02 Score=27.21 Aligned_cols=41 Identities=15% Similarity=0.107 Sum_probs=5.7
Q ss_pred hhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006756 266 NEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQR 306 (632)
Q Consensus 266 nk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~ 306 (632)
++...++|.-|......|.........-..+...||..+.+
T Consensus 3 ~knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr 43 (129)
T 3tnu_B 3 NRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNR 43 (129)
T ss_dssp -------------------------------CHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34556777777777766666665544444555666665543
No 121
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.14 E-value=9.2 Score=31.79 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=38.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASDF 186 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~l 186 (632)
..+.|-|+|.. .+...|++ |+.|.++ .++...++ .-+.|+|.|.|.+. ..-..|+..
T Consensus 17 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~a~~~ 77 (105)
T 2dh8_A 17 GKLFVGGLDWS--------TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVLAS 77 (105)
T ss_dssp SEECCBSCCTT--------CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESST-THHHHHHHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCH-HHHHHHHHh
Confidence 45667888753 36778999 9999875 45555543 34679999999864 444455544
No 122
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=55.10 E-value=97 Score=26.26 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=18.0
Q ss_pred HHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHH
Q 006756 258 LASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYA 296 (632)
Q Consensus 258 L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~ 296 (632)
+...+......+...+....+...+...+++++..|...
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444455556665555444
No 123
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=54.51 E-value=2e+02 Score=31.66 Aligned_cols=107 Identities=15% Similarity=0.129 Sum_probs=54.7
Q ss_pred ecCCCCCCCchhhhhhhccCCCCHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH---HHHH
Q 006756 217 RADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE---KDRL 293 (632)
Q Consensus 217 radDy~~~g~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE---k~~l 293 (632)
.-+|+...=|-|=-| .++..+..|.-..-|..|+|.|..-.+.-...-.-.+.++..|+....+ ++..
T Consensus 38 aDeDwGvkCPSGCrL---------qglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~ 108 (491)
T 1m1j_A 38 VDDDWGTKCPSGCRM---------QGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDEN 108 (491)
T ss_dssp CTTSTTTEECCSTTH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCccch---------hhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhH
Confidence 556666543333222 2345555555555666666666655555555555555555555555543 5556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 006756 294 HYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKK 332 (632)
Q Consensus 294 h~~yneE~~kmQ~~ar~~~~rI~~e~ekl~~eLe~k~~e 332 (632)
..+|.++++.-+---.+.+..-|..-.-|+.-|+.+..+
T Consensus 109 ~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~sk 147 (491)
T 1m1j_A 109 YGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVE 147 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666544433333333333333444455444443
No 124
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.35 E-value=18 Score=30.42 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=35.3
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCC
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNND 176 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~G-h~G~aIV~F~~d 176 (632)
|-++.|-|+|.. .+...|++ |+.|.++ .+....+..| +.|++.|.|.+.
T Consensus 25 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~ 76 (114)
T 1x5o_A 25 PTNLYISNLPLS--------MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMEST 76 (114)
T ss_dssp TTEEEEESCCTT--------CCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCH
Confidence 456778899763 36778899 9999754 4555555544 479999999863
No 125
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.33 E-value=1.5e+02 Score=28.07 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhc
Q 006756 386 VEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 386 ve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~ 430 (632)
|-.-.++-..+..+.-+|++||..+..+ |.-|.++|.-+|++
T Consensus 103 Va~ar~~~~~~e~r~~~L~~ql~e~~~~---l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 103 VADARKEKYAIEILNKRLTEQLREKDTL---LDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3455788888999999999999988654 45556666555553
No 126
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=54.17 E-value=13 Score=32.77 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=35.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC----CcceEEEEeCCChh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN----PTAQAVVKFNNDWN 178 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~G----h~G~aIV~F~~dw~ 178 (632)
++.|-|+|.. .+...|++ |+.|.++ .++...++.+ +.|+|.|.|.+.-.
T Consensus 5 ~l~V~nLp~~--------~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~ 59 (175)
T 3nmr_A 5 KMFVGQVPRT--------WSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKA 59 (175)
T ss_dssp EEEEESCCTT--------CCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHH
Confidence 3567888763 36778999 9999875 4555555554 68999999987643
No 127
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=54.17 E-value=15 Score=32.90 Aligned_cols=57 Identities=7% Similarity=0.019 Sum_probs=38.9
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC-C-CcceEEEEeCCChhchhhHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE-N-PTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~-G-h~G~aIV~F~~dw~Gf~nA~~ 185 (632)
+-++.|-|+|.. .+...|++ |+.|.++ .|..+.++. | +.|+|.|.|.+.-. -..|+.
T Consensus 39 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-A~~Ai~ 99 (156)
T 1h2v_Z 39 SCTLYVGNLSFY--------TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRAD-AENAMR 99 (156)
T ss_dssp CCEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH-HHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHH-HHHHHH
Confidence 457778999753 36778999 9999865 555555543 3 57999999986443 344443
No 128
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.12 E-value=16 Score=30.19 Aligned_cols=56 Identities=11% Similarity=0.192 Sum_probs=38.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcc-cCCc-eeeeeccCCC-CcceEEEEeCCChhchhhHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAV-FKPV-EVRIFWNEEN-PTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~-F~p~-kv~~l~~~~G-h~G~aIV~F~~dw~Gf~nA~~ 185 (632)
.++.|-|+|.. .+...|++ |+. |.++ .+....+..| +.|+|.|.|.+--. -..|+.
T Consensus 10 ~~l~V~nLp~~--------~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~-a~~A~~ 69 (104)
T 2dhg_A 10 YSLFVGDLTPD--------VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELE-QKRALT 69 (104)
T ss_dssp CCEEEECCCTT--------CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHH-HHHHHH
T ss_pred cEEEEeCCCCC--------CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHH-HHHHHH
Confidence 35668898753 36678899 998 9864 5566666555 57999999986443 334443
No 129
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=54.10 E-value=39 Score=28.43 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=34.6
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~d 176 (632)
..+.|-|+|.. .+...|++ |+.|.++ .++...++ .-+.|++.|.|.+.
T Consensus 26 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 77 (115)
T 2cpz_A 26 ANLFIYHLPQE--------FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 77 (115)
T ss_dssp CCEEEESCCSS--------CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSH
T ss_pred cEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCH
Confidence 45678899763 36678999 9999865 55555554 33678999999864
No 130
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.04 E-value=12 Score=30.95 Aligned_cols=48 Identities=19% Similarity=0.312 Sum_probs=34.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCCh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw 177 (632)
++.|-|+|. ..+...|++ |+.|.++ .+...+++ .-+.|+|.|.|.+.-
T Consensus 10 ~l~V~nlp~--------~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 61 (104)
T 1p1t_A 10 SVFVGNIPY--------EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 61 (104)
T ss_dssp CEEEESCCT--------TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHH
T ss_pred EEEEeCCCC--------cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHH
Confidence 567888875 346788999 9999864 55555553 235799999998643
No 131
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=53.90 E-value=4.2 Score=29.29 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=16.1
Q ss_pred eeccCCCCCCcCccCchhHHhhhc
Q 006756 40 LRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 40 ~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
-||-||..+ +-+.+.|+-|-.
T Consensus 10 qhcrfckkk---ysdvknlikhir 30 (37)
T 2elu_A 10 QHCRFCKKK---YSDVKNLIKHIR 30 (37)
T ss_dssp CEETTTTEE---CSSHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHH
Confidence 699999733 447899999954
No 132
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=53.78 E-value=20 Score=30.86 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=34.4
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~G-h~G~aIV~F~~d 176 (632)
-++.|-|+|.. .+...|++ |+.|.++ .|....+..| +.|+|.|.|.+.
T Consensus 8 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~ 58 (116)
T 2fy1_A 8 GKLFIGGLNRE--------TNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENP 58 (116)
T ss_dssp CEEEEECCTTT--------CCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCH
Confidence 35668898753 46778999 9999865 4555555433 569999999864
No 133
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=53.70 E-value=8.7 Score=32.10 Aligned_cols=60 Identities=8% Similarity=-0.059 Sum_probs=38.1
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCC-C-CcceEEEEeCCChhchhhHH
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEE-N-PTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~~-G-h~G~aIV~F~~dw~Gf~nA~ 184 (632)
+++|-|+|.-.... .-.+...|++ |+.|.++. ++...++. | +.|++.|.|.+.-. -..|+
T Consensus 8 ~vfV~nLp~v~~~~--~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~-A~~Ai 71 (100)
T 3ns6_A 8 YIVVNGAPVIPSAK--VPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMND-AKKII 71 (100)
T ss_dssp EEEEESCCCCBGGG--HHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHH-HHHHH
T ss_pred EEEEeCCCcCChHH--HHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHH-HHHHH
Confidence 57788998622111 1235677888 99998654 55555554 3 67999999987433 33344
No 134
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=53.67 E-value=15 Score=35.80 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=41.0
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCCCcceEEEEeCCChhchhhHHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEENPTAQAVVKFNNDWNGFMQASDF 186 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~l 186 (632)
-++.|-|+|.. .+...|.+ |+.|.++ .|+...+..|.+|+|.|.|.+ -..-..|+.+
T Consensus 42 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~-~~~A~~A~~~ 100 (292)
T 2ghp_A 42 TTVLVKNLPKS--------YNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFAR-YDGALAAITK 100 (292)
T ss_dssp CEEEEEEECTT--------CCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESS-HHHHHHHHTT
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECC-HHHHHHHHHh
Confidence 35678999863 36778999 9999864 466666778889999999985 3334445543
No 135
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.63 E-value=16 Score=30.71 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=33.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
-++.|-|+|. ..+...|++ |+.|.++....+... .|+|.|.|.+.-
T Consensus 26 ~~l~V~nl~~--------~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~ 72 (109)
T 1x4g_A 26 CTVYCGGIAS--------GLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHE 72 (109)
T ss_dssp CEEEEECCSS--------CCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHH
T ss_pred cEEEEeCCCC--------CCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHH
Confidence 4677889875 346788999 999987644444322 789999998744
No 136
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.47 E-value=14 Score=30.28 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=34.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc--eeeeeccC--CCCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV--EVRIFWNE--ENPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~--kv~~l~~~--~Gh~G~aIV~F~~d 176 (632)
-++.|-|+|. ..+...|++ |+.|.++ .+....++ ..+.|+|.|.|.+-
T Consensus 10 ~~l~V~nLp~--------~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~ 62 (99)
T 2div_A 10 ASLWMGDLEP--------YMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADL 62 (99)
T ss_dssp SEEEECSCCT--------TCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCH
T ss_pred cEEEEeCCCC--------CCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCH
Confidence 4566788875 346788999 9999974 56666654 34669999999854
No 137
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=53.33 E-value=16 Score=31.30 Aligned_cols=49 Identities=10% Similarity=0.220 Sum_probs=34.7
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCcee-eeeccC--CCCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEV-RIFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv-~~l~~~--~Gh~G~aIV~F~~dw 177 (632)
.++.|-|+|.. .+...|.+ |+.|.++.- ....++ ..+.|+|.|.|.+.-
T Consensus 23 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 75 (126)
T 3ex7_B 23 WILFVTGVHEE--------ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYK 75 (126)
T ss_dssp EEEEEESCCTT--------CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHH
Confidence 46778999753 36778999 999987654 344442 335899999998654
No 138
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=52.66 E-value=6.7 Score=32.00 Aligned_cols=49 Identities=20% Similarity=0.038 Sum_probs=33.6
Q ss_pred ceEEEEeccccccCCccccCChhhHh----h-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLK----R-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~----d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
-++.|-|+|.. .+...|+ + |+.|.++....+.....+.|+|.|.|.+.-
T Consensus 9 ~~l~V~nLp~~--------~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~ 62 (97)
T 1nu4_A 9 HTIYINNLNEK--------IKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVS 62 (97)
T ss_dssp SEEEEESCCTT--------SCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHH
Confidence 35678898753 3566777 8 999987665554432345689999998643
No 139
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=52.54 E-value=17 Score=30.95 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=33.7
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWN 178 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~ 178 (632)
.++.|-|+|. ..+...|++ |+.|.++.-..+-. ..|+|.|.|.+.-.
T Consensus 11 ~~l~V~nLp~--------~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~ 58 (111)
T 1whx_A 11 TVILAKNLPA--------GTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLE 58 (111)
T ss_dssp EEEEEESCCT--------TCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHH
Confidence 3567889875 346788999 99999875444432 56799999986543
No 140
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.47 E-value=19 Score=28.45 Aligned_cols=44 Identities=11% Similarity=0.021 Sum_probs=31.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNN 175 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~ 175 (632)
-++.|-|+|.. .+...|++ |+.|.++....+.. +.|+|.|.|.+
T Consensus 13 ~~l~V~~l~~~--------~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~ 57 (85)
T 2ytc_A 13 TTLYVGGLGDT--------ITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFAT 57 (85)
T ss_dssp CCEEEECCTTT--------SCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESS
T ss_pred cEEEEcCCCCC--------CCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECC
Confidence 34668898753 46788999 99998755444432 36899999986
No 141
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=52.46 E-value=20 Score=29.69 Aligned_cols=44 Identities=20% Similarity=0.125 Sum_probs=31.7
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
.+.|-|++.. ..+...|++ |+.|.++....+ +.|+|.|.|.+.-
T Consensus 24 ~l~V~nLp~~-------~~t~~~L~~~F~~~G~v~~v~i-----~~g~afV~f~~~~ 68 (97)
T 2xnq_A 24 RLFIGNLPLK-------NVSKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDNPQ 68 (97)
T ss_dssp EEEEESCCSS-------CCCHHHHHHHHGGGSCEEEEEE-----CSSEEEEEESSHH
T ss_pred EEEEeCCCcc-------cCCHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECCHH
Confidence 4557888630 236778899 999987665555 3789999998743
No 142
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=52.36 E-value=16 Score=32.49 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=32.9
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
-++.|-|+|.. .+...|++ |+.|.++.-..+. .++.|++.|.|.+.-
T Consensus 74 ~~l~V~nl~~~--------~t~~~l~~~F~~~G~i~~v~i~--~~~~g~afV~f~~~~ 121 (150)
T 2i2y_A 74 CKVYVGNLGNN--------GNKTELERAFGYYGPLRSVWVA--RNPPGFAFVEFEDPR 121 (150)
T ss_dssp CEEEEESCCSC--------CSCHHHHHHHHHHSCEEEEEEC--SSSCSEEEEEESSHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhhCCEEEEEEe--eCCCcEEEEEECCHH
Confidence 45668898753 36678899 9999875443332 237899999997643
No 143
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.06 E-value=20 Score=29.48 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=35.9
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
-++.|-|+|.. .+...|++ |+.|.|..|..+.-. +|+|.|.|.+. ..-..|+.
T Consensus 16 ~~l~V~nLp~~--------~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~-~~A~~A~~ 69 (99)
T 2cpd_A 16 KILYVRNLMLS--------TSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNR-EDAVEAMK 69 (99)
T ss_dssp CEEEEESCCTT--------CCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSH-HHHHHHHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCH-HHHHHHHH
Confidence 35668898753 36678999 999977666666544 56999999763 33344444
No 144
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=52.01 E-value=24 Score=29.86 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=33.8
Q ss_pred cceEEEEeccccccCCccccCChhhHh---h-hcccCCceeeeec-cCC-----CCcceEEEEeCCCh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLK---R-FAVFKPVEVRIFW-NEE-----NPTAQAVVKFNNDW 177 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~---d-~~~F~p~kv~~l~-~~~-----Gh~G~aIV~F~~dw 177 (632)
.-++.|-|+|... +...|+ + |+.|.++.-..+. +.. .++|+|.|.|.+.-
T Consensus 15 ~~~l~V~nLp~~~--------~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~ 74 (111)
T 2cpi_A 15 KNLVFVVGLSQRL--------ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSE 74 (111)
T ss_dssp SSCEEEEEECTTT--------CCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHH
T ss_pred CCEEEEECCCCCC--------CHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHH
Confidence 3456788998643 456677 8 9999976544443 322 45689999998743
No 145
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=51.92 E-value=20 Score=29.41 Aligned_cols=47 Identities=4% Similarity=0.010 Sum_probs=33.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWN 178 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~ 178 (632)
..+.|-|+|.. .+...|++ |+.|.++....+-. ..|+|.|.|.+.-.
T Consensus 16 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~~~~---~kg~afV~f~~~~~ 63 (99)
T 2cpj_A 16 SRLFVGNLPPD--------ITEEEMRKLFEKYGKAGEVFIHK---DKGFGFIRLETRTL 63 (99)
T ss_dssp TEEEEESCCTT--------CCHHHHHHHTSTTCCCSEEEEET---TTTEEEEECSSSHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHhhcCCeEEEEEec---CCCEEEEEECCHHH
Confidence 46778899763 36678899 99998765444432 26899999987543
No 146
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=51.67 E-value=11 Score=30.54 Aligned_cols=54 Identities=15% Similarity=0.088 Sum_probs=34.8
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccC---CceeeeeccC--CCCcceEEEEeCCChhchhhHH
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFK---PVEVRIFWNE--ENPTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~---p~kv~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~ 184 (632)
++.|-|++.. .+...|++ |+.|. ...++...+. .-+.|++.|.|.+. ..-..|+
T Consensus 3 ~l~V~nL~~~--------~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~-~~a~~Ai 62 (90)
T 3p5t_L 3 ALYIGNLTWW--------TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSE-ASSKKLM 62 (90)
T ss_dssp -CEEESCCTT--------CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CH-HHHHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCH-HHHHHHH
Confidence 4567788652 36678999 99998 3455555553 24579999999754 3444555
No 147
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=51.41 E-value=18 Score=29.69 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=31.0
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~d 176 (632)
++.|-|+|.. ..+...|++ |+.|.++....+ +.|+|.|.|.+.
T Consensus 12 ~l~V~nlp~~-------~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~ 55 (96)
T 2kvi_A 12 RLFIGNLPLK-------NVSKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDNP 55 (96)
T ss_dssp EEEEESSTTS-------CCCHHHHHHHHTTTCCCCEEEE-----ETTEEEEEESCH
T ss_pred EEEEeCCCcc-------cCCHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECCH
Confidence 4557888741 236678899 999987665555 378999999863
No 148
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=51.39 E-value=21 Score=31.32 Aligned_cols=57 Identities=5% Similarity=0.125 Sum_probs=38.2
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
+..+.|-|+|.. .+...|++ |+.|.++ .+....+. ..++|++.|.|.+. ..-..|+.
T Consensus 87 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~ 147 (167)
T 2cjk_A 87 TGKIFVGGIGPD--------VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA-DAVDRVCQ 147 (167)
T ss_dssp CEEEEEEEECTT--------CCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH-HHHHHHHH
T ss_pred CCeEEECCCCCC--------CCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH-HHHHHHHh
Confidence 346778898753 36778999 9999865 45555543 34779999999763 33334443
No 149
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=51.27 E-value=14 Score=31.12 Aligned_cols=51 Identities=18% Similarity=0.089 Sum_probs=36.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~ 184 (632)
-++.|-|+|.. ..+...|++ |+.|.++.-..+ +.|+|.|.|.+.-. -..|+
T Consensus 28 ~~l~V~nl~~~-------~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~-A~~A~ 79 (110)
T 1wf1_A 28 SRVFIGNLNTA-------LVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERH-ARAAV 79 (110)
T ss_dssp SEEEECSCCCS-------SCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHH-HHHHH
T ss_pred cEEEEeCCCcc-------cCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHH-HHHHH
Confidence 36778898753 036778899 999998665555 68999999987553 33444
No 150
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=51.11 E-value=18 Score=30.28 Aligned_cols=56 Identities=11% Similarity=0.185 Sum_probs=35.7
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCC-CCcceEEEEeCCChh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEE-NPTAQAVVKFNNDWN 178 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~-Gh~G~aIV~F~~dw~ 178 (632)
-++.|-|+|...++. ...+...|++ |+.|.++.-..+-... .+.|+|.|.|.+.-.
T Consensus 16 ~~l~V~nLp~~~~~~--~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~ 73 (105)
T 2nlw_A 16 SVIVVDNVPQVGPDR--LEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAH 73 (105)
T ss_dssp SEEEEESCCCCCTTT--TTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSH
T ss_pred CEEEEeCCCcchhhh--hHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHH
Confidence 356788998633211 0114577888 9999986544443333 367999999987543
No 151
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=51.07 E-value=17 Score=32.44 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=37.3
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
+.++.|.|+|.. .+...|++ |+.|..+.+. ....-++|++.|.|.+.- .-..|+.
T Consensus 99 ~~~l~v~nlp~~--------~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~-~A~~A~~ 154 (175)
T 1fje_B 99 ARTLLAKNLSFN--------ITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEA-DAEKNLE 154 (175)
T ss_dssp GGEEEEESCCSS--------CCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHH-HHHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHH-HHHHHHH
Confidence 457788999753 36678899 9998765554 344457899999998733 3333443
No 152
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=50.97 E-value=20 Score=29.50 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=33.7
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWN 178 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~ 178 (632)
.++.|-|++. ..+...|++ |+.|.++.-..+. -+.|+|.|.|.+.-.
T Consensus 28 ~~l~V~nlp~--------~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~ 75 (101)
T 2la4_A 28 TTAYIGNIPH--------FATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQ 75 (101)
T ss_dssp CEEEEESCCT--------TCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHH
T ss_pred CEEEEcCCCc--------ccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHH
Confidence 3567889875 336788999 9999876544443 457899999987543
No 153
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=50.86 E-value=39 Score=32.73 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=34.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhc
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNG 179 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~G 179 (632)
.++.|-|++. ..+...|++ |+.|.++....+. .+..|++.|+|.+.-..
T Consensus 208 ~~l~v~nl~~--------~~~~~~l~~~F~~~G~i~~v~~~--~~~~g~afV~f~~~~~A 257 (282)
T 3pgw_A 208 HILFLTNLPE--------ETNELMLSMLFNQFPGFKEVRLV--PGRHDIAFVEFDNEVQA 257 (282)
T ss_pred CEEEEeCCCC--------cCCHHHHHHHHHhcCCeEEEEEe--cCCCcEEEEEeCCHHHH
Confidence 5577888865 236678899 9999876555444 34468999999875433
No 154
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=50.09 E-value=22 Score=33.78 Aligned_cols=64 Identities=8% Similarity=0.147 Sum_probs=41.6
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc---eeeeeccCCCCcceEEEEeCCChhchhhHHHHHhhhhhcC
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV---EVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADH 194 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~---kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~lek~Fe~~~ 194 (632)
+..|-|+|.. .+...|++ |+.|.++ .|+.+-...+.+|++.|+|.+ ..-=..|+.-=+.+...+
T Consensus 125 ~l~v~NLp~~--------~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~-~~~A~~Ai~~lng~~~~g 192 (205)
T 3tyt_A 125 VLHFFNAPLE--------VTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDS-KSDALETLGFLNHYQMKN 192 (205)
T ss_dssp EEEEEEECTT--------CCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSS-HHHHHHHHHHHTTCEECC
T ss_pred eEEEeCCCCC--------CCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCC-HHHHHHHHHHhCCCCccC
Confidence 4667898753 36788999 9999875 566555554567999999986 333344544333334333
No 155
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.58 E-value=21 Score=29.65 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=31.8
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCC-ceeeeec--cCC--CCcceEEEEeCCC
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP-VEVRIFW--NEE--NPTAQAVVKFNND 176 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p-~kv~~l~--~~~--Gh~G~aIV~F~~d 176 (632)
++.|-|+|.. .+...|++ |+.|.+ +.-..+. ... -+.|+|.|.|.+.
T Consensus 10 ~l~V~nLp~~--------~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~ 62 (109)
T 2dis_A 10 RLFIGGIPKM--------KKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESH 62 (109)
T ss_dssp EEEEECCCTT--------SCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSH
T ss_pred EEEEeCCCCc--------CCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCH
Confidence 4568888753 36778899 999975 4333333 222 4689999999863
No 156
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=49.00 E-value=18 Score=32.23 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=38.2
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~ 184 (632)
+.++.|-|+|.. .+...|++ |+.|.++ .++...++ ..+.|++.|.|.+.- .-..|+
T Consensus 70 ~~~l~v~nl~~~--------~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~-~a~~A~ 129 (158)
T 2kn4_A 70 MTSLKVDNLTYR--------TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR-DAEDAM 129 (158)
T ss_dssp CCEEEEESCCTT--------CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHH-HHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHH-HHHHHH
Confidence 456778898763 46778999 9999876 44445443 347899999998633 334444
No 157
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=48.98 E-value=14 Score=34.85 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=37.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCCCcceEEEEeCCChh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEENPTAQAVVKFNNDWN 178 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~Gh~G~aIV~F~~dw~ 178 (632)
.+.|-|++.. .+...|++ |+.|.++ .++.+.+..+.+|++.|.|.+.-.
T Consensus 105 ~l~v~nl~~~--------~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 105 NIFIKNLDKS--------IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 155 (213)
T ss_dssp EEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHH
T ss_pred cceECCcccc--------cHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHH
Confidence 4567888753 36678999 9999864 566677778889999999977543
No 158
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=48.95 E-value=21 Score=30.58 Aligned_cols=49 Identities=18% Similarity=0.102 Sum_probs=35.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC--CCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE--NPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~--Gh~G~aIV~F~~dw 177 (632)
-++.|-|++. ..+...|++ |+.|.++ .|...+++. -+.|++.|.|.+.-
T Consensus 7 ~~lfV~nL~~--------~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~ 59 (110)
T 3s8s_A 7 KEVTFARLND--------NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTR 59 (110)
T ss_dssp CEEEEESCCT--------TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred cEEEEECCCC--------CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHH
Confidence 3567888865 236788999 9999875 456666654 36899999998743
No 159
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=48.56 E-value=25 Score=30.64 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=25.4
Q ss_pred CChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 006756 140 DSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 140 ~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~d 176 (632)
.+...|++ |+.|.++.-..+- ...|+|.|.|.+.
T Consensus 49 ~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~ 83 (121)
T 2bz2_A 49 MTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKM 83 (121)
T ss_dssp CCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSH
T ss_pred CCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCH
Confidence 36788999 9999876544442 4678999999763
No 160
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=48.53 E-value=22 Score=30.92 Aligned_cols=48 Identities=13% Similarity=0.280 Sum_probs=34.2
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~d 176 (632)
..+.|-|+|.. .+...|++ |+.|.++ .+....++ .-++|++.|.|.+.
T Consensus 88 ~~l~v~nl~~~--------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 139 (166)
T 3md3_A 88 FNLFVGDLNVN--------VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 139 (166)
T ss_dssp EEEEEESCCTT--------CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred ceEEECCCCCC--------CCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCH
Confidence 46778898753 36688999 9999874 45555443 34578999999874
No 161
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=48.37 E-value=20 Score=30.47 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=32.0
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~d 176 (632)
+-++.|-|++.. .+...|++ |+.|.++....+. .|+|.|.|.+.
T Consensus 31 ~~~l~V~nLp~~--------~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~ 75 (108)
T 2jvo_A 31 NTRLFVRPFPLD--------VQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEA 75 (108)
T ss_dssp CSEEEECSSCTT--------CCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSH
T ss_pred CCEEEEECCCCC--------CCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCH
Confidence 345667888753 36678899 9999876555444 78999999863
No 162
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=48.31 E-value=21 Score=33.39 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=36.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~G-h~G~aIV~F~~dw 177 (632)
.++.|-|++. ..+...|++ |+.|.++ .|...++..| +.|+|.|.|.+.-
T Consensus 89 ~~l~V~nLp~--------~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~ 140 (177)
T 2f3j_A 89 AKLLVSNLDF--------GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRA 140 (177)
T ss_dssp EEEEEECCCS--------CCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHH
Confidence 4677889875 347788999 9999865 5555555544 5799999998643
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=48.11 E-value=23 Score=32.01 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=35.2
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~d 176 (632)
.++.|-|+|.. .+...|++ |+.|.++. +..+.+. ..+.|+|.|.|.+.
T Consensus 105 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 105 KKIFVGGIKED--------TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp SEEEEECCTTT--------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ceEEEeCCCCC--------CCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 57788999763 36678999 99998764 5555553 33689999999874
No 164
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.08 E-value=24 Score=28.56 Aligned_cols=49 Identities=18% Similarity=-0.021 Sum_probs=33.1
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceee-eeccCCCCcceEEEEeCCCh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVR-IFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~-~l~~~~Gh~G~aIV~F~~dw 177 (632)
+..+.|-|+|.. .+...|++ |+.|.++.-. .+. ....+|.+.|.|.+.-
T Consensus 15 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~v~~~~~i~-~~~~~~~afV~f~~~~ 65 (96)
T 2e44_A 15 IRKLQIRNIPPH--------LQWEVLDSLLVQYGVVESCEQVN-TDSETAVVNVTYSSKD 65 (96)
T ss_dssp CCCEEEEEECSS--------SCHHHHHHHHHHHSCEEEEEEEC-CSSSSEEEEEEESSHH
T ss_pred CCEEEEEcCCCC--------CCHHHHHHHHHhcCCeEEEEEee-cCCCCCEEEEEECCHH
Confidence 356778899753 36778899 9999876554 232 2334556999998643
No 165
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=48.00 E-value=44 Score=27.94 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhHHhhhhhhHHHhhhhHHHH
Q 006756 398 SKILQLEKQLDAKQKLEMEIEDLKGKLEVM 427 (632)
Q Consensus 398 ~kil~LekqL~~kQ~LELEi~qLkG~L~Vm 427 (632)
..|-.||++|++| +-+|++|+..|.-.
T Consensus 40 ~~I~eLEk~L~ek---d~eI~~LqseLDKf 66 (72)
T 3nmd_A 40 ALIDELELELDQK---DELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 3488888888765 67888888887533
No 166
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=47.72 E-value=22 Score=32.12 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=36.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC-CC-CcceEEEEeCCChh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE-EN-PTAQAVVKFNNDWN 178 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~-~G-h~G~aIV~F~~dw~ 178 (632)
+.++.|-|+|.. .+...|++ |+.|.++ .+....++ .| +.|++.|.|.+.-.
T Consensus 114 ~~~l~v~nl~~~--------~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~ 168 (198)
T 2yh0_A 114 AHKLFIGGLPNY--------LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 168 (198)
T ss_dssp CCEEEEECCCTT--------CCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHH
Confidence 466778888753 36678899 9999875 55555553 33 58999999987544
No 167
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=47.25 E-value=19 Score=28.53 Aligned_cols=49 Identities=12% Similarity=-0.088 Sum_probs=30.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hccc----CCc-----eeeeeccCCCCcceEEEEeCCCh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVF----KPV-----EVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F----~p~-----kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
+.++.|-|+|. ..+...|++ |+.| ... .+..+.-.. ..|+|.|.|.+.-
T Consensus 6 ~~~l~V~nLp~--------~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-~kg~afV~f~~~~ 64 (87)
T 2hzc_A 6 ARRLYVGNIPF--------GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKNFAFLEFRSVD 64 (87)
T ss_dssp GGEEEEESCCT--------TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-SSSEEEEEESSHH
T ss_pred CCEEEEeCCCC--------CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-CCcEEEEEcCCHH
Confidence 45677889875 336788899 9888 410 222222122 2789999998743
No 168
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=47.06 E-value=21 Score=31.40 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=37.0
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC--CCcceEEEEeCCChhchhhHHH
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE--NPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~--Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
++.|-|+|.. .+...|++ |+.|.++ .+...+++. -+.|+|.|.|.+.- .-..|+.
T Consensus 48 ~l~V~nLp~~--------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~-~A~~Ai~ 106 (129)
T 2kxn_B 48 CLGVFGLSLY--------TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD-DAKEAKE 106 (129)
T ss_dssp CBCEETCTTS--------CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHH-HHHHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHH-HHHHHHH
Confidence 4557898753 46778999 9999865 455555543 47899999997643 3344443
No 169
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=46.85 E-value=78 Score=28.85 Aligned_cols=72 Identities=22% Similarity=0.294 Sum_probs=38.3
Q ss_pred hhhHHHhhhhHHHHhhcCCCCc----HHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhc------cHHHHHHHHH
Q 006756 414 EMEIEDLKGKLEVMKHLGDEDD----AAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQS------NDELQEARRE 483 (632)
Q Consensus 414 ELEi~qLkG~L~VmKh~~~~~d----~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~s------ndELq~aRk~ 483 (632)
.--|..|++.+.--.++..+.. .++..--.+|...|..-+.+| ++|..+..+-|+.. .+||+. |+.
T Consensus 37 q~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dL---eDLe~sI~ivE~np~kF~l~~~Ei~~-Rr~ 112 (130)
T 4dnd_A 37 QKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDL---EDLEETIGIVEANPGKFKLPAGDLQE-RKV 112 (130)
T ss_dssp HHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCHHHHCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCHHhcCCCHHHHHH-HHH
Confidence 3334445555555555443322 234444455555555555555 56777777777654 778866 776
Q ss_pred HHHhhh
Q 006756 484 LIQGLS 489 (632)
Q Consensus 484 lI~~l~ 489 (632)
.|..++
T Consensus 113 fV~~~r 118 (130)
T 4dnd_A 113 FVERMR 118 (130)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 170
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=46.80 E-value=18 Score=33.21 Aligned_cols=56 Identities=13% Similarity=0.056 Sum_probs=36.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccC---CceeeeeccC-CC-CcceEEEEeCCChhchhhHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFK---PVEVRIFWNE-EN-PTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~---p~kv~~l~~~-~G-h~G~aIV~F~~dw~Gf~nA~~ 185 (632)
-.+.|-|++. ..+...|++ |+.|. ...|+...+. .| ..||+.|.|.+. ..-..|+.
T Consensus 56 ~~lfVgnLp~--------~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~-~~A~~Ai~ 117 (156)
T 3n9u_C 56 AAVYVGSFSW--------WTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASE-NSVHKLLE 117 (156)
T ss_dssp CEEEEECCCT--------TCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCH-HHHHHHHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCH-HHHHHHHH
Confidence 4667888865 336788999 99998 3445555453 23 579999999754 33334443
No 171
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.38 E-value=13 Score=31.20 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=32.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-----eeeeeccCCCCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-----EVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-----kv~~l~~~~Gh~G~aIV~F~~d 176 (632)
-++.|-|+|.. .+...|++ |+.|.++ .+... ...+.|+|.|.|.+.
T Consensus 26 ~~l~V~nLp~~--------~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~ 77 (115)
T 2cpx_A 26 KVLYLKNLSPR--------VTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNK 77 (115)
T ss_dssp SEEEEECCCTT--------CCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCH
Confidence 46678899753 36678888 9888765 23333 445679999999863
No 172
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=46.35 E-value=1.8e+02 Score=26.72 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 006756 386 VEEQKVEKEEALSKILQLEKQLD 408 (632)
Q Consensus 386 ve~hkrEke~~~~kil~LekqL~ 408 (632)
+++-+++..++..+|.+||..|.
T Consensus 112 ~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 112 IKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666665554
No 173
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=46.10 E-value=20 Score=31.49 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=36.8
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC-CC-CcceEEEEeCCChhchhhHHH
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE-EN-PTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~-~G-h~G~aIV~F~~dw~Gf~nA~~ 185 (632)
++.|-|+|.. .+...|++ |+.|.++ .+....++ .| +.|+|.|.|.+. ..-..|+.
T Consensus 5 ~l~v~nlp~~--------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~a~~ 63 (168)
T 1b7f_A 5 NLIVNYLPQD--------MTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSE-MDSQRAIK 63 (168)
T ss_dssp EEEEECCCTT--------CCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSH-HHHHHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCH-HHHHHHHH
Confidence 4678888763 36778999 9999976 44444443 23 679999999854 33344443
No 174
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=45.88 E-value=13 Score=32.42 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=39.6
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce---eeeeccC--CCCcceEEEEeCCChhchhhHHHHHh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE---VRIFWNE--ENPTAQAVVKFNNDWNGFMQASDFEK 188 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k---v~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~lek 188 (632)
.+.|-|++... +...|++ |+.|.++. |+...++ .-+.||+.|.|.+. ..-.-...|+.
T Consensus 25 ~lfV~nL~~~~--------te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g 88 (131)
T 2m2b_A 25 TIILRNLNPHS--------TMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQA 88 (131)
T ss_dssp EEEECSCCTTC--------CSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTT
T ss_pred EEEEeCCCCCC--------CHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcC
Confidence 56678987633 5678899 99998763 5666665 33679999999987 54433344443
No 175
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=45.18 E-value=1.2e+02 Score=32.95 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=41.9
Q ss_pred CCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhhccCCccccc--------ccccC
Q 006756 433 EDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIG--------VKRLG 504 (632)
Q Consensus 433 ~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~~~~~~~~~Ig--------iKrmG 504 (632)
++-.+++..+.+|.+++.+.++++. ++++....++..+..++...+.+| |++-|
T Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ipN~~~~~vP~g~~e~~n~~~~~~g 130 (455)
T 2dq0_A 69 EPVDELLAKSREIVKRIGELENEVE------------------ELKKKIDYYLWRLPNITHPSVPVGKDENDNVPIRFWG 130 (455)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHTTSCCCCCTTSCCCSSGGGCEEEEEES
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCCCCCEEEEEcC
Confidence 4557888888888888888777774 666677777778888776556665 99999
Q ss_pred C
Q 006756 505 E 505 (632)
Q Consensus 505 e 505 (632)
+
T Consensus 131 ~ 131 (455)
T 2dq0_A 131 K 131 (455)
T ss_dssp C
T ss_pred C
Confidence 7
No 176
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.14 E-value=26 Score=28.71 Aligned_cols=47 Identities=26% Similarity=0.121 Sum_probs=34.0
Q ss_pred eEEEEeccccccCCccccCChhhHh----h-hcccCCc-eeeeeccCCCCcceEEEEeCCCh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLK----R-FAVFKPV-EVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~----d-~~~F~p~-kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
.+.|-|+|.. .+...|+ + |+.|.++ .|+...+..+ .|+|.|.|.+.-
T Consensus 11 ~l~V~nL~~~--------~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~ 63 (96)
T 2dgx_A 11 DVQVSNIDYR--------LSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQ 63 (96)
T ss_dssp EEEEESCCTT--------SCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHH
T ss_pred EEEEECCCCC--------CCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHH
Confidence 4668898753 3567777 8 9999864 4555556666 899999998643
No 177
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.97 E-value=40 Score=27.33 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=35.9
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
.+.|-|+|.. .+...|++ |+.|.++.-.+.....|. ++.|.|.+ -..-..|+.
T Consensus 10 ~l~V~nl~~~--------~t~~~l~~~F~~~G~v~~v~~~~~~g~--~afV~f~~-~~~a~~ai~ 63 (94)
T 2e5g_A 10 SVFVSGFPRG--------VDSAQLSEYFLAFGPVASVVMDKDKGV--FAIVEMGD-VGAREAVLS 63 (94)
T ss_dssp EEEEECCCTT--------CCHHHHHHHGGGTSCEEEEEECSSSCC--EEEEEESS-HHHHHHHHT
T ss_pred EEEEECCCCC--------CCHHHHHHHHHhcCCeEEEEEcCCCCc--EEEEEECC-HHHHHHHHh
Confidence 3557788753 36778899 999998765544333444 99999986 445555555
No 178
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=44.22 E-value=19 Score=31.88 Aligned_cols=49 Identities=22% Similarity=0.246 Sum_probs=35.0
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCC
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNND 176 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~d 176 (632)
+.++.|-|+|.. .+...|++ |+.|.++ .|....+. ..+.|++.|.|.+.
T Consensus 47 ~~~l~V~nLp~~--------~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~ 99 (135)
T 2lea_A 47 MTSLKVDNLTYR--------TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 99 (135)
T ss_dssp CCCEEEECCCSS--------CHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCH
Confidence 346778899763 36778899 9999866 45444443 35789999999863
No 179
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=44.13 E-value=36 Score=29.90 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=37.0
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC-C-CCcceEEEEeCCChh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE-E-NPTAQAVVKFNNDWN 178 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~-~-Gh~G~aIV~F~~dw~ 178 (632)
+.++.|-|+|.. .+...|++ |+.|.++. +....++ . -+.|++.|.|.+.-.
T Consensus 94 ~~~l~v~nlp~~--------~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 148 (172)
T 2g4b_A 94 AHKLFIGGLPNY--------LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 148 (172)
T ss_dssp TTCEEEECCCTT--------CCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTH
T ss_pred CCEEEEEcCCCc--------CCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 677889999763 36778999 99998765 4444443 2 357999999987544
No 180
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=43.88 E-value=1.5e+02 Score=31.87 Aligned_cols=61 Identities=8% Similarity=0.116 Sum_probs=34.9
Q ss_pred hhhhhhhccCCCCHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhh-----------hHHHHhHHHHHHHH
Q 006756 227 IGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNET-----------TMSLSRMLEEKDRL 293 (632)
Q Consensus 227 iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~-----------t~sL~r~meEk~~l 293 (632)
|-.+|.|+ .--|....+....+|.-|.|.-...+.+++.+...++.. +.+.++|+++..+|
T Consensus 25 i~d~L~k~------e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~ 96 (409)
T 1m1j_C 25 IADFFNKY------RLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRY 96 (409)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH------HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHH
Confidence 56677765 222334444445555555555566666676766666552 55666666665443
No 181
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=43.55 E-value=14 Score=31.75 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=36.7
Q ss_pred eEEEEecccccc--CCccccCChhhHhh-hcccCCceeeee-ccCCC----CcceEEEEeCCChhc
Q 006756 122 MGIIVNIVMETK--DRGSFLDSGYWLKR-FAVFKPVEVRIF-WNEEN----PTAQAVVKFNNDWNG 179 (632)
Q Consensus 122 mgII~Ni~te~~--dg~~~G~s~~~L~d-~~~F~p~kv~~l-~~~~G----h~G~aIV~F~~dw~G 179 (632)
+++|.|+.+..+ +......--..|++ |+.|.++.-..+ -+..+ ..|++.|.|.+.-..
T Consensus 7 vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A 72 (105)
T 3v4m_A 7 VLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDC 72 (105)
T ss_dssp EEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHH
T ss_pred EEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHH
Confidence 578999977432 32222333467777 889997544444 34433 369999999986543
No 182
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=43.45 E-value=28 Score=30.42 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=35.0
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCC
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNND 176 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~d 176 (632)
+.++.|-|+|.. .+...|++ |+.|.++. +....+. ..++|++.|.|.+.
T Consensus 89 ~~~l~v~nl~~~--------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 89 DTNLYVTNLPRT--------ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp TCEEEEESCCTT--------CCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCEEEeCCCCC--------CCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 356788999753 36688999 99998754 4444443 33579999999873
No 183
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=43.41 E-value=23 Score=31.22 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=36.0
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceee--------eeccCCCCcceEEEEeCCChhchhhHHH
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVR--------IFWNEENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~--------~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
++.|-|+|.. .+...|++ |+.|.++... .+.....+.|+|.|.|.+.-. -..|+.
T Consensus 47 ~l~V~nLp~~--------~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~-A~~Ai~ 110 (143)
T 3egn_A 47 RIYVKNLAKH--------VQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKA-AAKALK 110 (143)
T ss_dssp EEEEEEECTT--------CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHH-HHHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHH-HHHHHH
Confidence 5778899752 36778999 9999876531 112234568999999976433 344444
No 184
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=42.93 E-value=36 Score=29.04 Aligned_cols=52 Identities=13% Similarity=0.032 Sum_probs=35.0
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~ 184 (632)
.++.|-|+|. ..+...|++ |+.|.++....+-. ..|+|.|+|.+ ...-..|+
T Consensus 16 ~~l~V~nLp~--------~~te~~L~~~F~~fG~V~~v~i~~---~kg~aFVef~~-~~~A~~Ai 68 (104)
T 1wex_A 16 PVVHVRGLCE--------SVVEADLVEALEKFGTICYVMMMP---FKRQALVEFEN-IDSAKECV 68 (104)
T ss_dssp SEEEEESCCS--------SCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESS-HHHHHHHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHhCCCEEEEEEEC---CCCEEEEEECC-HHHHHHHH
Confidence 4677889875 336778999 99999765444322 26899999986 33334444
No 185
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.75 E-value=35 Score=27.54 Aligned_cols=43 Identities=19% Similarity=0.052 Sum_probs=31.0
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~d 176 (632)
-++.|-|+|.. .+...|++ |+.|.++....+. .|+|.|.|.+-
T Consensus 11 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~ 54 (92)
T 2dgt_A 11 TKLHVGNISPT--------CTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERA 54 (92)
T ss_dssp EEEEEESCCSS--------CCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCH
Confidence 45668898753 36778999 9999876544443 44999999863
No 186
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=42.61 E-value=26 Score=31.57 Aligned_cols=56 Identities=11% Similarity=0.155 Sum_probs=38.0
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC-C-CcceEEEEeCCChhchhhHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE-N-PTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~-G-h~G~aIV~F~~dw~Gf~nA~~ 185 (632)
-++.|-|+|.. .+...|++ |+.|.++ .+....++. | +.|+|.|.|.+. ..-..|+.
T Consensus 14 ~~l~V~nLp~~--------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~A~~ 73 (196)
T 1l3k_A 14 RKLFIGGLSFE--------TTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAMN 73 (196)
T ss_dssp GEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH-HHHHHHHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCH-HHHHHHHh
Confidence 35778899863 36778899 9999875 455555543 3 689999999763 33344443
No 187
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=42.34 E-value=1.1e+02 Score=25.35 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhh
Q 006756 308 ARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKL 354 (632)
Q Consensus 308 ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL 354 (632)
+-+.+++++.||..||.-|.-....|--|+++|.--....-.+|.=|
T Consensus 6 ~~e~~q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl 52 (70)
T 3brv_B 6 APETLQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFL 52 (70)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44568899999999999999888899999999986555444444433
No 188
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.26 E-value=38 Score=28.79 Aligned_cols=45 Identities=11% Similarity=-0.033 Sum_probs=31.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~d 176 (632)
.++.|-|+|. ..+...|++ |+.|.++.-..+-. + .|+|.|+|...
T Consensus 16 ~~l~V~nLp~--------~~te~~L~~~F~~fG~v~~v~i~~--~-kg~aFVef~~~ 61 (101)
T 2cq1_A 16 RVLHIRKLPG--------EVTETEVIALGLPFGKVTNILMLK--G-KNQAFLELATE 61 (101)
T ss_dssp SEEEEESCCT--------TCCHHHHHHTTTTTSCEEEEEEET--T-TTEEEEEESSH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHhcCCEEEEEEEC--C-CCEEEEEECCH
Confidence 3567789874 346778999 99998754333322 2 78999999874
No 189
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=42.20 E-value=1.7e+02 Score=25.21 Aligned_cols=73 Identities=25% Similarity=0.294 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHH----hhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHH
Q 006756 390 KVEKEEALSKILQLEKQLDAK----QKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKT 465 (632)
Q Consensus 390 krEke~~~~kil~LekqL~~k----Q~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~ 465 (632)
+.+++.+.++..++|.++... -++|-||..|+-+++++..- -......+......|++.+......|+-+.+
T Consensus 15 k~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~e----ld~~~e~l~~a~~kLe~~ek~~~~AE~evas 90 (101)
T 3u59_A 15 KLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDE----VEKYSESVKEAQEKLEQAEKKATDAEAEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777888888877776543 33566666666666544331 1123344445555555555544433333333
Q ss_pred H
Q 006756 466 L 466 (632)
Q Consensus 466 L 466 (632)
|
T Consensus 91 L 91 (101)
T 3u59_A 91 L 91 (101)
T ss_dssp H
T ss_pred H
Confidence 3
No 190
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=41.92 E-value=28 Score=30.22 Aligned_cols=47 Identities=9% Similarity=0.141 Sum_probs=33.3
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC-CC-CcceEEEEeCCC
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE-EN-PTAQAVVKFNND 176 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~-~G-h~G~aIV~F~~d 176 (632)
++.|-|+|.. .+...|++ |+.|.++. +....++ .| +.|+|.|.|.+.
T Consensus 4 ~l~v~nlp~~--------~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~ 54 (167)
T 1fxl_A 4 NLIVNYLPQN--------MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 54 (167)
T ss_dssp EEEEESCCTT--------CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred eEEEcCCCCC--------CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCH
Confidence 4667888763 36778999 99998764 4444444 33 569999999863
No 191
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.74 E-value=1.5e+02 Score=27.51 Aligned_cols=43 Identities=28% Similarity=0.340 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhc
Q 006756 385 LVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 385 Lve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~ 430 (632)
.|-.-.++-..+..+.-+|+.||..+..| |.-|..+|.-+|++
T Consensus 90 MVa~ar~~~~~~e~r~~~L~~ql~e~e~l---l~~lq~QL~~LK~v 132 (135)
T 2e7s_A 90 LVADARMEKYAIEILNKRLTEQLREKDML---LDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHTTTHHHHC---C-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34444788888999999999999998654 55567777766664
No 192
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=41.39 E-value=2.4e+02 Score=26.93 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 006756 392 EKEEALSKILQLEKQLD 408 (632)
Q Consensus 392 Eke~~~~kil~LekqL~ 408 (632)
++..+..+|..|||+-.
T Consensus 119 e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 119 ERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55567777777777543
No 193
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=40.95 E-value=32 Score=30.14 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=34.0
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~dw 177 (632)
.+.|-|+|.. .+...|++ |+.|.++. +....++ .-+.|+|.|.|.+.-
T Consensus 5 ~l~v~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 56 (167)
T 2cjk_A 5 KMFIGGLNWD--------TTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPS 56 (167)
T ss_dssp EEEECSCCTT--------CCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHH
Confidence 4667888763 36778999 99998754 4444443 347799999998754
No 194
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=40.67 E-value=2.3e+02 Score=26.77 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhh
Q 006756 384 RLVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLN 463 (632)
Q Consensus 384 kLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~n 463 (632)
..+..-+.|...+..+|.+|+..|..|.++-- .+..-+..|+-++..-++.+..++.-|
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e---------------------~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTE---------------------RLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666667777788888888887777775422 233445556666666666666666777
Q ss_pred HHHH
Q 006756 464 KTLI 467 (632)
Q Consensus 464 q~L~ 467 (632)
+.||
T Consensus 127 ~~LV 130 (152)
T 3a7p_A 127 SQLV 130 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7666
No 195
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.64 E-value=28 Score=27.95 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=31.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
.++.|-|+|. ..+...|++ |+.|.++.-..+. .|++.|.|.+.-
T Consensus 10 ~~l~V~nlp~--------~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~ 54 (90)
T 2dnp_A 10 WKIFVGNVSA--------ACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEA 54 (90)
T ss_dssp CCEEEESCCT--------TCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHH
Confidence 3566889875 336778999 9999975544443 449999998643
No 196
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=40.53 E-value=1.9e+02 Score=31.93 Aligned_cols=90 Identities=20% Similarity=0.279 Sum_probs=55.9
Q ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 006756 316 LEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEE 395 (632)
Q Consensus 316 ~~e~ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~ 395 (632)
+.++++|+..|...+.++.+=...++.++++ +.-.+-|||.|..+.-.+ .+||+.
T Consensus 348 vae~~~lrQRlddArNEItsaeSaInslqaq---------------------vSa~t~e~k~A~d~l~a~----~kek~~ 402 (602)
T 1cii_A 348 VAEWDKLRQRLLDARNKITSAESAVNSARNN---------------------LSARTNEQKHANDALNAL----LKEKEN 402 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 3467888877887777777666666543332 112233333333322111 256677
Q ss_pred HHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhc
Q 006756 396 ALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 396 ~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~ 430 (632)
+.+.+-.+.+...++|+=+-|..+++..+..+--+
T Consensus 403 ~~n~~a~~~~KiAE~KrK~dE~~aIKDAVkfTAdF 437 (602)
T 1cii_A 403 IRNQLSGINQKIAEEKRKQDELKATKDAINFTTEF 437 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 77777777777777777777888898888776544
No 197
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=40.30 E-value=20 Score=31.21 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=36.7
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC--CCcceEEEEeCCChhchhhHHH
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE--NPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~--Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
++.|-|++.. .+...|++ |+.|.++ .|....+.. -+.|+|.|.|.+.-. -..|+.
T Consensus 44 ~l~V~nLp~~--------~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-a~~A~~ 102 (139)
T 1u6f_A 44 NLMVNYIPTT--------VDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSS-AQQAIA 102 (139)
T ss_dssp EEEEESCSTT--------CCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHH-HHHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHH-HHHHHH
Confidence 4667888753 36678999 9999875 455555543 358999999986433 333443
No 198
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=40.03 E-value=33 Score=32.38 Aligned_cols=49 Identities=10% Similarity=-0.075 Sum_probs=35.4
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCC-CcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEEN-PTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~~G-h~G~aIV~F~~dw 177 (632)
-++.|-|+|.. .+...|++ |+.|.++. |+...+..| +.|+|.|+|.+.-
T Consensus 110 ~~l~V~nLp~~--------~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e 161 (193)
T 2voo_A 110 RSVYIKGFPTD--------ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIE 161 (193)
T ss_dssp TEEEEECCCTT--------CCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHH
T ss_pred CEEEecCCCCc--------CCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHH
Confidence 46778899763 35678899 99998754 444444444 6799999998744
No 199
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=39.81 E-value=13 Score=22.44 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=14.4
Q ss_pred CeeeccCCCCCCcCccCchhHHhhh
Q 006756 38 GTLRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 38 ~~~~CP~C~gkkK~dy~~~~LLqHA 62 (632)
+.|.|+.|+.. +.....|..|.
T Consensus 1 ~~~~C~~C~k~---f~~~~~l~~H~ 22 (29)
T 2m0f_A 1 GPLKCRECGKQ---FTTSGNLKRHL 22 (29)
T ss_dssp CCEECTTTSCE---ESCHHHHHHHH
T ss_pred CCccCCCCCCc---cCChhHHHHHH
Confidence 36899999732 33455677774
No 200
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=39.75 E-value=21 Score=31.32 Aligned_cols=55 Identities=9% Similarity=-0.151 Sum_probs=35.6
Q ss_pred eEEEEecccccc--CCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 006756 122 MGIIVNIVMETK--DRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 122 mgII~Ni~te~~--dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
+++|.|+.+..+ |..+..+=-..|++ |+.|.++.-..+. .....|++.|.|.+.-
T Consensus 9 vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~-~~~~~G~~fV~f~~~e 66 (114)
T 3s6e_A 9 CFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVD-KNSAQGNVYVKCPSIA 66 (114)
T ss_dssp EEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEEC-TTCTTCCEEEECSSHH
T ss_pred EEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEe-cCCCcEEEEEEECCHH
Confidence 588999988543 43343333456677 8889876544442 2234899999998753
No 201
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=39.50 E-value=2.9e+02 Score=27.20 Aligned_cols=9 Identities=22% Similarity=0.114 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 006756 475 DELQEARRE 483 (632)
Q Consensus 475 dELq~aRk~ 483 (632)
...+..|+.
T Consensus 179 ~~Yerir~~ 187 (256)
T 3na7_A 179 SFYERIRRW 187 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 345555553
No 202
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=39.30 E-value=41 Score=32.73 Aligned_cols=51 Identities=22% Similarity=0.183 Sum_probs=36.1
Q ss_pred ecceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCC---CCcceEEEEeCCC
Q 006756 119 WPWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEE---NPTAQAVVKFNND 176 (632)
Q Consensus 119 WPwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~~---Gh~G~aIV~F~~d 176 (632)
-+.++.|.|+|... .+...|++ |+.|.++. |+...+.. .++|++.|.|.+.
T Consensus 209 ~~~~l~v~nlp~~~-------~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 209 EGREIMIRNLSTEL-------LDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTTEEEEEEECTTT-------CCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCceEEEECCCccc-------CCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 35678889997530 35678899 99998754 44444443 3679999999764
No 203
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=38.70 E-value=28 Score=28.77 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=31.2
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
++.|-|+|.. .+...|++ |+.|.++....+. .|++.|.|.+.-
T Consensus 13 ~l~V~nl~~~--------~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~ 56 (103)
T 2dgu_A 13 VLFVRNLANT--------VTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERD 56 (103)
T ss_dssp CEEEECCCTT--------CCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHH
Confidence 4668898753 36778999 9999876555443 569999998643
No 204
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=38.53 E-value=39 Score=32.71 Aligned_cols=51 Identities=8% Similarity=0.007 Sum_probs=37.1
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCCC-cceEEEEeCCCh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEENP-TAQAVVKFNNDW 177 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~Gh-~G~aIV~F~~dw 177 (632)
+.++.|-|+|... -+...|++ |+.|.++ .+....++.|. +|++.|.|.+.-
T Consensus 184 ~~~l~v~nlp~~~-------~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 237 (284)
T 3smz_A 184 SRCLCVDRLPPGF-------NDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAE 237 (284)
T ss_dssp CSEEEEECCCTTC-------CCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHH
T ss_pred ccEEEEecCCccc-------CCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHH
Confidence 4567788987531 14578889 9999864 56666666674 899999998654
No 205
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=37.93 E-value=2.8e+02 Score=26.55 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q 006756 308 ARDNVRRILEEQEK 321 (632)
Q Consensus 308 ar~~~~rI~~e~ek 321 (632)
|+..+.+||.++-+
T Consensus 56 AF~E~ik~FeeQ~~ 69 (170)
T 3l4q_C 56 AFNETIKIFEEQGQ 69 (170)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55556667776543
No 206
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.87 E-value=19 Score=29.06 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=32.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCC-ceeeeeccCCCCcceEEEEeCCCh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP-VEVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p-~kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
.+.|-|+|.. .+...|++ |+.|.+ +....+. +.|+|.|.|.+.-
T Consensus 10 ~l~V~nLp~~--------~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~ 55 (93)
T 2cqh_A 10 KLYIGNLSPA--------VTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQN 55 (93)
T ss_dssp CEEEECCCTT--------CCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHH
Confidence 4567888753 36778899 999998 6655552 4789999998643
No 207
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.78 E-value=32 Score=30.00 Aligned_cols=45 Identities=13% Similarity=0.034 Sum_probs=32.1
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCCCcceEEEEeCCC
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~~Gh~G~aIV~F~~d 176 (632)
+.++.|-|+|. ..+...|++ |+.|.++. |..+-+ .|+|.|+|.+.
T Consensus 16 ~~~LfV~nLp~--------~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~ 62 (105)
T 1sjq_A 16 SRVIHIRKLPI--------DVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTE 62 (105)
T ss_dssp CCEEEECSCCT--------TSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSH
T ss_pred CCEEEEeCCCC--------CCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCH
Confidence 35667789875 236778999 99998754 444432 68999999864
No 208
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=37.48 E-value=48 Score=28.73 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=34.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC-CC-CcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE-EN-PTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~-~G-h~G~aIV~F~~d 176 (632)
..+.|-|+|.. .+...|++ |+.|.++ .+....+. .| +.|++.|.|.+.
T Consensus 89 ~~l~v~nl~~~--------~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 89 ANLYVSGLPKT--------MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp CEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CcEEECCCCCc--------CCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 45778898753 36788999 9999875 44555443 33 579999999874
No 209
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=37.23 E-value=87 Score=33.50 Aligned_cols=55 Identities=15% Similarity=0.421 Sum_probs=37.6
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC-CC-CcceEEEEeCCChhchhhHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE-EN-PTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~-~G-h~G~aIV~F~~dw~Gf~nA~ 184 (632)
-++.|-|++.. .+...|.+ |+.|.++ .|..+++. .| +.|||.|.|.+.-. -..|+
T Consensus 103 ~~lfV~nL~~~--------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~-A~~Ai 161 (437)
T 3pgw_S 103 KTLFVARVNYD--------TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERD-MHSAY 161 (437)
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHH-HHHHH
Confidence 46778898753 36678889 9999876 45555553 33 58999999976544 34444
No 210
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.23 E-value=2.1e+02 Score=25.06 Aligned_cols=82 Identities=18% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006756 324 CELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQL 403 (632)
Q Consensus 324 ~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~L 403 (632)
.+|++.....+.....|...-+..-.-|...+.++.+-...-..|..+=.++ .=+.|-.-.++-..+..+.-+|
T Consensus 15 ~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeE------AN~MVa~ar~e~~~~e~kn~~L 88 (97)
T 2eqb_B 15 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE------ANNMVADARKEKYAIEILNKRL 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHHh
Q 006756 404 EKQLDAKQ 411 (632)
Q Consensus 404 ekqL~~kQ 411 (632)
+.||..+.
T Consensus 89 ~~qL~d~d 96 (97)
T 2eqb_B 89 TEQLREKD 96 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhcc
No 211
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=37.03 E-value=28 Score=27.98 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=32.9
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
.+.|-|+|.. .+...|++ |+.| ++.-..+ + .+.|+|.|.|.+. ..-..|+.
T Consensus 7 ~l~V~nLp~~--------~t~~~l~~~F~~~-~v~~~~i--~-~~~g~afV~f~~~-~~a~~Ai~ 58 (88)
T 1wg1_A 7 GILVKNLPQD--------SNCQEVHDLLKDY-DLKYCYV--D-RNKRTAFVTLLNG-EQAQNAIQ 58 (88)
T ss_dssp CEEEESCCSS--------CCHHHHHHHTCSS-CCCCEEE--E-GGGTEEEECCSCH-HHHHHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHhhC-CeEEEEE--e-CCCcEEEEEECCH-HHHHHHHH
Confidence 4567888753 36788999 9999 5433333 1 5779999999854 33334443
No 212
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=36.75 E-value=17 Score=23.71 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=16.4
Q ss_pred cCCeeeccCCCCCCcCccCchhHHhhhc
Q 006756 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 36 ~~~~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
....|.||.|... +.....|.+|-.
T Consensus 8 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 32 (37)
T 1p7a_A 8 GIKPFQCPDCDRS---FSRSDHLALHRK 32 (37)
T ss_dssp CSSSBCCTTTCCC---BSSHHHHHHHHG
T ss_pred CCCCccCCCCCcc---cCcHHHHHHHHH
Confidence 3567999999733 334556777743
No 213
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.35 E-value=67 Score=27.40 Aligned_cols=37 Identities=22% Similarity=0.082 Sum_probs=28.1
Q ss_pred cCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 006756 139 LDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 139 G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
+.+...|++ |+.|.++.-..+- ..+.|+|.|+|...-
T Consensus 28 ~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~ 65 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVK 65 (100)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHH
Confidence 457888999 9999976544443 467899999998744
No 214
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=34.88 E-value=52 Score=30.07 Aligned_cols=47 Identities=9% Similarity=0.136 Sum_probs=33.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC-C-CCcceEEEEeCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE-E-NPTAQAVVKFNN 175 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~-~-Gh~G~aIV~F~~ 175 (632)
-++.|-|++.. .+...|++ |+.|.++ .++.+.+. . -+.|++.|.|.+
T Consensus 126 ~~l~v~nlp~~--------~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 126 NRIYVASVHQD--------LSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp CEEEEECCCTT--------CCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cEEEEeCCCCc--------CCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 46778898753 36788999 9999865 45555443 2 347999999976
No 215
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=34.36 E-value=61 Score=27.64 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=49.1
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC---CCcceEEEEeCCChhchhhHHHHHhhhhhcCCC
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE---NPTAQAVVKFNNDWNGFMQASDFEKAFDADHQG 196 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~~---Gh~G~aIV~F~~dw~Gf~nA~~lek~Fe~~~~G 196 (632)
+++|.|+.+..+ +.-.....|++ |+.|.++ .|....++. ...|++.|.|.+.-..-.-...|+..+
T Consensus 10 ~l~l~Nm~~~~~---l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~------ 80 (105)
T 2pe8_A 10 VVLLRNMVGAGE---VDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY------ 80 (105)
T ss_dssp EEEEESSSCSCC---C---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE------
T ss_pred EEEEEcCCChHH---hhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE------
Confidence 678889875321 11124678888 9999875 454444432 347999999987644333222333221
Q ss_pred hhhhhhhcCCCCCceeeeeeecCCCCC
Q 006756 197 KRHWIARKESPGLRIYGWFARADDNTS 223 (632)
Q Consensus 197 RkdW~~~~~~~~~~LYGWvAradDy~~ 223 (632)
.. ++.|+--.|..++|..
T Consensus 81 --------~~-Gr~i~v~~a~~~~f~~ 98 (105)
T 2pe8_A 81 --------FG-GRVVKACFYNLDKFRV 98 (105)
T ss_dssp --------ET-TEECEEEECCHHHHHT
T ss_pred --------EC-CcEEEEEEcCHHHhhh
Confidence 12 5677777777666644
No 216
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=34.24 E-value=1.1e+02 Score=26.03 Aligned_cols=44 Identities=18% Similarity=0.418 Sum_probs=29.9
Q ss_pred HHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHH
Q 006756 400 ILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLD 457 (632)
Q Consensus 400 il~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~ 457 (632)
+++|..||+ .|.-||.+|+|++++.-| .|..|.....+-..+|+
T Consensus 22 ~~~Lq~Ql~---~Lq~Ev~~LRGqiE~~~~-----------~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 22 LTQLQQQLS---DNQSDIDSLRGQIQENQY-----------QLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 456666665 688899999999998777 35555555555555543
No 217
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=33.90 E-value=59 Score=29.68 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=34.8
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCC
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNND 176 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~--~Gh~G~aIV~F~~d 176 (632)
..++.|-|+|.. .+...|++ |+.|.++. +..+... .-+.|+|.|.|.+.
T Consensus 28 ~~~l~V~nLp~~--------~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 80 (216)
T 2qfj_A 28 MSRVYVGSIYYE--------LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP 80 (216)
T ss_dssp HTEEEEECCCTT--------CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSH
T ss_pred CCEEEEECCCCC--------CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCH
Confidence 346788999863 36778999 99998754 5554543 23789999999764
No 218
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.57 E-value=1.7e+02 Score=26.51 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHhhHHHH
Q 006756 439 QKKMKEMNDELESKIDDLDEMESLNKTLI 467 (632)
Q Consensus 439 ~~k~~~l~~~l~ek~~el~~~e~~nq~L~ 467 (632)
...|..|+.+|++...+++.+-.-|+.|-
T Consensus 77 qgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 77 EGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 33455555566666666665555555444
No 219
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=33.44 E-value=2.6e+02 Score=24.92 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=38.8
Q ss_pred HhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 006756 344 EALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQK 412 (632)
Q Consensus 344 ~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~ 412 (632)
+.+=..-|+||.+..+.-......++..++.++.+ +-..+.+||-+|.+||.....
T Consensus 48 E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~-------------~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 48 EQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRA-------------AVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 33334567788777776666777888888877543 334567899999999877654
No 220
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=33.34 E-value=63 Score=27.90 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=31.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
++-|-|+|. ..+..+|++ |+.|.++.-..+-- ..|+|.|+|.+.-
T Consensus 23 ~l~V~NLp~--------~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~ 68 (100)
T 3r27_A 23 VVHIRGLID--------GVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVL 68 (100)
T ss_dssp EEEEESCCT--------TCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHH
T ss_pred EEEEeCCCC--------CCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHH
Confidence 466789875 336788999 99998755333321 3589999998643
No 221
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=33.13 E-value=21 Score=21.51 Aligned_cols=22 Identities=14% Similarity=0.531 Sum_probs=14.4
Q ss_pred CeeeccCCCCCCcCccCchhHHhhh
Q 006756 38 GTLRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 38 ~~~~CP~C~gkkK~dy~~~~LLqHA 62 (632)
..|.|+.|+.. +.....|..|-
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~ 23 (27)
T 2kvh_A 2 KPFSCSLCPQR---SRDFSAMTKHL 23 (27)
T ss_dssp CCEECSSSSCE---ESSHHHHHHHH
T ss_pred cCccCCCcChh---hCCHHHHHHHH
Confidence 46999999733 33455666774
No 222
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=32.63 E-value=11 Score=31.16 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=38.6
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccC--CCCcceEEEEeCCChhchhhHHHH
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNE--ENPTAQAVVKFNNDWNGFMQASDF 186 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~--~Gh~G~aIV~F~~dw~Gf~nA~~l 186 (632)
+-.+.|-|+|.. .+...|++ |+.|.++....+... .-+.|+|.|.|.+. ..-..|+.|
T Consensus 17 ~~~l~V~nLp~~--------~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~-~~a~~A~~l 77 (101)
T 1fj7_A 17 PFNLFIGNLNPN--------KSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESA-EDLEKALEL 77 (101)
T ss_dssp SEEEEEECCCTT--------SCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSH-HHHHHHHHG
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCH-HHHHHHHhc
Confidence 346778899753 36778899 998886655333332 24679999999763 444556553
No 223
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=32.37 E-value=2.3e+02 Score=31.19 Aligned_cols=50 Identities=20% Similarity=0.458 Sum_probs=32.3
Q ss_pred HHH-HHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhhccCCccccc---------ccccCCC
Q 006756 439 QKK-MKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIG---------VKRLGEI 506 (632)
Q Consensus 439 ~~k-~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~~~~~~~~~Ig---------iKrmGel 506 (632)
+.+ +..|.+++.+.++++ .++++....++..+..++...+.|| |++-|+.
T Consensus 109 ~~~~~~~l~~~i~~le~~~------------------~~~~~~~~~~l~~iPN~~~~~vP~g~~e~~~n~~v~~~g~~ 168 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEA------------------QQLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFGNT 168 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHTTCCCCCCTTSCCCSCHHHHCEEEEEESCT
T ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhCCCCCCccCCCCCCcccCcEEEEecCCC
Confidence 555 666666666655555 3566666677777777765554444 8888875
No 224
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.87 E-value=1.9e+02 Score=24.22 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHh
Q 006756 437 AVQKKMKEMNDELESKIDDLDEMESL 462 (632)
Q Consensus 437 ~~~~k~~~l~~~l~ek~~el~~~e~~ 462 (632)
++...++++..+|.+..+....|+++
T Consensus 60 ~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 60 KVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667777777777776665544
No 225
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.85 E-value=51 Score=29.21 Aligned_cols=45 Identities=13% Similarity=0.049 Sum_probs=33.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCCCcceEEEEeCCCh
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~~Gh~G~aIV~F~~dw 177 (632)
.++.|-|+|.. .+...|++ |+.|.++. |..+.+ .|+|.|+|...-
T Consensus 32 ~~LfVgNLp~~--------vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e 78 (119)
T 2ad9_A 32 RVIHIRKLPID--------VTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEE 78 (119)
T ss_dssp SEEEEESCCTT--------CCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHH
Confidence 46778898753 36778999 99998654 555543 689999998744
No 226
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.65 E-value=23 Score=22.96 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=15.1
Q ss_pred CCeeeccCCCCCCcCccCchhHHhhh
Q 006756 37 NGTLRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 37 ~~~~~CP~C~gkkK~dy~~~~LLqHA 62 (632)
...|.||.|... +.....|..|.
T Consensus 7 ~k~~~C~~C~k~---f~~~~~l~~H~ 29 (36)
T 2els_A 7 GKIFTCEYCNKV---FKFKHSLQAHL 29 (36)
T ss_dssp CCCEECTTTCCE---ESSHHHHHHHH
T ss_pred CCCEECCCCCce---eCCHHHHHHHH
Confidence 467999999733 33445566774
No 227
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=31.33 E-value=52 Score=29.18 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=30.5
Q ss_pred eEEEEeccccccCCccccCChhhH----hh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWL----KR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L----~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~d 176 (632)
++.|-|++... +...| .+ |+.|.++.-..+-......|+|.|.|.+-
T Consensus 31 ~LfV~nL~~~~--------~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~ 82 (127)
T 2a3j_A 31 VVLITNINPEV--------PKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQ 82 (127)
T ss_dssp EEEEESCCTTS--------CHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSH
T ss_pred EEEEeCCCCCC--------CHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCH
Confidence 56788987422 34444 46 88998764433323345789999999874
No 228
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.89 E-value=24 Score=22.68 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=15.8
Q ss_pred cCCeeeccCCCCCCcCccCchhHHhhh
Q 006756 36 VNGTLRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 36 ~~~~~~CP~C~gkkK~dy~~~~LLqHA 62 (632)
....|.|+.|... +.....|..|-
T Consensus 6 ~~~~~~C~~C~k~---f~~~~~l~~H~ 29 (36)
T 2elr_A 6 SGKTHLCDMCGKK---FKSKGTLKSHK 29 (36)
T ss_dssp CCSSCBCTTTCCB---CSSHHHHHHHH
T ss_pred CCCCeecCcCCCC---cCchHHHHHHH
Confidence 3567999999733 33455666774
No 229
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.07 E-value=24 Score=22.69 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=15.0
Q ss_pred CCeeeccCCCCCCcCccCchhHHhhh
Q 006756 37 NGTLRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 37 ~~~~~CP~C~gkkK~dy~~~~LLqHA 62 (632)
...|.|+.|... +.....|..|-
T Consensus 7 ~k~~~C~~C~k~---f~~~~~l~~H~ 29 (36)
T 2elt_A 7 GKPYKCPQCSYA---SAIKANLNVHL 29 (36)
T ss_dssp CCSEECSSSSCE---ESSHHHHHHHH
T ss_pred CCCCCCCCCCcc---cCCHHHHHHHH
Confidence 457999999733 33445566774
No 230
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.93 E-value=26 Score=22.78 Aligned_cols=24 Identities=29% Similarity=0.653 Sum_probs=15.4
Q ss_pred cCCeeeccCCCCCCcCccCc-hhHHhhh
Q 006756 36 VNGTLRCPFCSGKKKQDYKH-KDLLQHA 62 (632)
Q Consensus 36 ~~~~~~CP~C~gkkK~dy~~-~~LLqHA 62 (632)
....|.|+.|+.. +..- ..|..|-
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~~L~~H~ 30 (37)
T 2elp_A 6 SGRAMKCPYCDFY---FMKNGSDLQRHI 30 (37)
T ss_dssp CCCCEECSSSSCE---ECSSCHHHHHHH
T ss_pred CCCCeECCCCChh---hccCHHHHHHHH
Confidence 3567999999733 2333 5676774
No 231
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.91 E-value=25 Score=21.10 Aligned_cols=23 Identities=13% Similarity=0.410 Sum_probs=15.1
Q ss_pred CeeeccCCCCCCcCccCchhHHhhhc
Q 006756 38 GTLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 38 ~~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
..|.|+.|+.. +.....|..|-.
T Consensus 2 k~~~C~~C~~~---f~~~~~l~~H~~ 24 (30)
T 2m0d_A 2 KPYQCDYCGRS---FSDPTSKMRHLE 24 (30)
T ss_dssp CCEECTTTCCE---ESCHHHHHHHHH
T ss_pred cCccCCCCCcc---cCCHHHHHHHHH
Confidence 46999999733 334556777743
No 232
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.13 E-value=2.9e+02 Score=25.25 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=5.4
Q ss_pred HHHHHHHhhHH
Q 006756 324 CELETKKKKLD 334 (632)
Q Consensus 324 ~eLe~k~~eld 334 (632)
..|+.+|++|-
T Consensus 35 ~~vd~km~ei~ 45 (138)
T 3hnw_A 35 SYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34455555554
No 233
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=29.05 E-value=64 Score=31.13 Aligned_cols=48 Identities=21% Similarity=0.070 Sum_probs=32.4
Q ss_pred eEEEEeccccccCCccccCChhhHh----h-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLK----R-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~----d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
++.|-|++... +...|+ + |+.|.++.-..+....-+.|++.|.|.+.-
T Consensus 11 ~l~V~nlp~~~--------~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~ 63 (282)
T 3pgw_A 11 TIYINNLNEKI--------KKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVS 63 (282)
T ss_pred EEEEeCCCCCC--------CHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHH
Confidence 45688987633 455655 7 888987655444444457799999997643
No 234
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=29.04 E-value=2.7e+02 Score=26.50 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 006756 333 LDSWSKQLNKREALTERERQKLDADRQ 359 (632)
Q Consensus 333 ld~r~k~L~k~~a~~~~er~kL~~Ek~ 359 (632)
++.-.+++.++.++-..+|-++..++.
T Consensus 115 I~aL~~Ei~~Lr~qL~~~R~k~~~em~ 141 (175)
T 3lay_A 115 INAVAKEMESLGQKLDEQRVKRDVAMA 141 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555544443
No 235
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=28.59 E-value=28 Score=20.89 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=13.3
Q ss_pred eeeccCCCCCCcCccCchhHHhhh
Q 006756 39 TLRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 39 ~~~CP~C~gkkK~dy~~~~LLqHA 62 (632)
.|.|+.|... +..-..|..|-
T Consensus 2 ~~~C~~C~~~---f~~~~~l~~H~ 22 (29)
T 1ard_A 2 SFVCEVCTRA---FARQEHLKRHY 22 (29)
T ss_dssp CCBCTTTCCB---CSSHHHHHHHH
T ss_pred CeECCCCCcc---cCCHHHHHHHH
Confidence 5899999733 33445566664
No 236
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=28.45 E-value=53 Score=31.85 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=38.4
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccC---CceeeeeccC-CC-CcceEEEEeCCChhchhhHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFK---PVEVRIFWNE-EN-PTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~---p~kv~~l~~~-~G-h~G~aIV~F~~dw~Gf~nA~~ 185 (632)
..+.|-|++.. .+...|++ |+.|. ...|+.+.+. .| ..||+.|.|.+.-. -..|+.
T Consensus 69 ~~lfVgnL~~~--------~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~-a~~Ai~ 130 (229)
T 3q2s_C 69 IALYIGNLTWW--------TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEAS-SKKLMD 130 (229)
T ss_dssp CEEEEESCCTT--------CCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTH-HHHHHT
T ss_pred cEEEEeCCCCC--------CCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHH-HHHHHH
Confidence 35678888753 36678999 99998 4566666663 33 57999999987643 344544
No 237
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=28.34 E-value=15 Score=31.44 Aligned_cols=13 Identities=31% Similarity=1.068 Sum_probs=10.6
Q ss_pred cCCeeeccCCCCC
Q 006756 36 VNGTLRCPFCSGK 48 (632)
Q Consensus 36 ~~~~~~CP~C~gk 48 (632)
.+.+|.||||.-.
T Consensus 20 L~t~F~CPfCnh~ 32 (85)
T 1wii_A 20 LETQFTCPFCNHE 32 (85)
T ss_dssp CSSCCCCTTTCCS
T ss_pred CCCeEcCCCCCCC
Confidence 5689999999744
No 238
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=28.20 E-value=26 Score=21.12 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=13.8
Q ss_pred eeeccCCCCCCcCccCchhHHhhh
Q 006756 39 TLRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 39 ~~~CP~C~gkkK~dy~~~~LLqHA 62 (632)
.|.|+.|+.. +..-..|..|-
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H~ 22 (29)
T 1rik_A 2 KFACPECPKR---FMRSDHLTLHI 22 (29)
T ss_dssp CEECSSSSCE---ESCSHHHHHHH
T ss_pred CccCCCCCch---hCCHHHHHHHH
Confidence 5899999733 33455666774
No 239
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.07 E-value=1.4e+02 Score=24.97 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=35.7
Q ss_pred HHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHH
Q 006756 442 MKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQ 486 (632)
Q Consensus 442 ~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~ 486 (632)
|.+|+.-|+.|.+++...+.....|-..-..-.+++++-|.+|-+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888888877666667778877777754
No 240
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=27.96 E-value=3.3e+02 Score=24.36 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhhhH
Q 006756 392 EKEEALSKILQLEKQLDAKQKLEMEI 417 (632)
Q Consensus 392 Eke~~~~kil~LekqL~~kQ~LELEi 417 (632)
--..+..+..-||-+|+.|..|.-++
T Consensus 85 k~n~aiErnalLE~El~EKe~L~~~~ 110 (111)
T 2v66_B 85 RLNQAIERNAFLESELDEKESLLVSV 110 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456667777889999888887554
No 241
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.59 E-value=29 Score=22.03 Aligned_cols=24 Identities=21% Similarity=0.312 Sum_probs=15.4
Q ss_pred CCeeeccCCCCCCcCccCchhHHhhhc
Q 006756 37 NGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 37 ~~~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
...|.|+.|... +.....|..|-.
T Consensus 5 ~k~~~C~~C~k~---f~~~~~L~~H~~ 28 (35)
T 2elx_A 5 SSGYVCALCLKK---FVSSIRLRSHIR 28 (35)
T ss_dssp CCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCeECCCCcch---hCCHHHHHHHHH
Confidence 457999999733 334455667743
No 242
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=33.30 E-value=13 Score=31.56 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=35.3
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce---------eeeeccCC--CCcceEEEEeCCChhchhhHHH
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE---------VRIFWNEE--NPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k---------v~~l~~~~--Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
.+.|-|+|... +...|++ |+.|.++. +....++. -..|+|.|.|.+.-.- ..|+.
T Consensus 9 ~l~V~nLp~~~--------t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A-~~Ai~ 75 (116)
T 2lcw_A 9 TIFVQGLGENV--------TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSA-KAAID 75 (116)
Confidence 35577886533 4556788 99998776 45555432 3679999999875433 33443
No 243
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=27.25 E-value=29 Score=20.83 Aligned_cols=22 Identities=23% Similarity=0.572 Sum_probs=14.5
Q ss_pred eeeccCCCCCCcCccCchhHHhhhc
Q 006756 39 TLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 39 ~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
.|.|+.|... +.....|..|..
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H~~ 23 (30)
T 1klr_A 2 TYQCQYCEFR---SADSSNLKTHIK 23 (30)
T ss_dssp CCCCSSSSCC---CSCSHHHHHHHH
T ss_pred CccCCCCCCc---cCCHHHHHHHHH
Confidence 5899999733 344566777743
No 244
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=27.11 E-value=56 Score=29.70 Aligned_cols=53 Identities=23% Similarity=0.272 Sum_probs=34.2
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCCCcceEEEEeCCChhchhhHHH
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
++.|-|+|.. ..+...|++ |+.|.++. ++...+. .|+|.|.|.+.-. -..|+.
T Consensus 5 ~l~v~nlp~~-------~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~-a~~A~~ 59 (198)
T 1qm9_A 5 VLLVSNLNPE-------RVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQ-AQLAMS 59 (198)
T ss_dssp EEEEECCCSS-------SCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHH-HHHHHH
T ss_pred EEEEeCCCcc-------cCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHH-HHHHHH
Confidence 4667888651 235678899 99998644 4444333 7899999986433 344544
No 245
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.09 E-value=29 Score=20.64 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=12.9
Q ss_pred eeeccCCCCCCcCccCchhHHhhh
Q 006756 39 TLRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 39 ~~~CP~C~gkkK~dy~~~~LLqHA 62 (632)
.|.||.|... +.....|..|-
T Consensus 2 ~~~C~~C~~~---f~~~~~l~~H~ 22 (29)
T 2m0e_A 2 EHKCPHCDKK---FNQVGNLKAHL 22 (29)
T ss_dssp CCCCSSCCCC---CCTTTHHHHHH
T ss_pred CCcCCCCCcc---cCCHHHHHHHH
Confidence 5889999733 22344555663
No 246
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=26.95 E-value=3.1e+02 Score=24.07 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=42.3
Q ss_pred HHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 006756 338 KQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQK 412 (632)
Q Consensus 338 k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~ 412 (632)
.++...+.+=-.-|+||....+.-......++..++.+..+ +-..+.+||-+|.++|.....
T Consensus 12 ~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~-------------~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 12 DNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRA-------------AVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444667888877776666777888888877543 334567899999999887665
No 247
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.81 E-value=30 Score=20.76 Aligned_cols=23 Identities=13% Similarity=0.314 Sum_probs=15.1
Q ss_pred CeeeccCCCCCCcCccCchhHHhhhc
Q 006756 38 GTLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 38 ~~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
..|.|+.|+.. +.....|..|-.
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~~ 24 (28)
T 2kvf_A 2 RPYSCSVCGKR---FSLKHQMETHYR 24 (28)
T ss_dssp CSEECSSSCCE---ESCHHHHHHHHT
T ss_pred cCccCCCCCcc---cCCHHHHHHHHH
Confidence 46899999733 344566777743
No 248
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=26.79 E-value=60 Score=29.48 Aligned_cols=46 Identities=20% Similarity=0.031 Sum_probs=30.4
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccC-CceeeeeccCCCCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFK-PVEVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~-p~kv~~l~~~~Gh~G~aIV~F~~d 176 (632)
.++.|.|+|. ..+...|++ |+.|. ++.-..+.. ...|++.|.|.+.
T Consensus 121 ~~l~v~nl~~--------~~~~~~l~~~f~~~G~~v~~v~i~~--~~~g~afV~f~~~ 168 (198)
T 1qm9_A 121 ATLHLSNIPP--------SVSEEDLKVLFSSNGGVVKGFKFFQ--KDRKMALIQMGSV 168 (198)
T ss_dssp CEEEECCCCT--------TCCHHHHHHHHHHTTSCCCEEEESS--TTSSCEEEECSSH
T ss_pred cEEEEeCCCC--------CCCHHHHHHHHHHcCCCceEEEEEe--CCCcEEEEEeCCH
Confidence 4566778865 336678899 99886 443333322 2378999999773
No 249
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=26.23 E-value=60 Score=30.69 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=33.5
Q ss_pred eEEEEeccc-cccCCccccCChhhHhh-hcccCCcee-eeeccCCCCcceEEEEeCCChhchhhHH
Q 006756 122 MGIIVNIVM-ETKDRGSFLDSGYWLKR-FAVFKPVEV-RIFWNEENPTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 122 mgII~Ni~t-e~~dg~~~G~s~~~L~d-~~~F~p~kv-~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~ 184 (632)
++.|-|+|. .. +...|++ |+.|.++.- +...+. .|+|.|.|.+-- .-..|+
T Consensus 36 ~l~V~nLp~~~~--------te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~-~A~~Ai 89 (229)
T 2adc_A 36 VLLVSNLNPERV--------TPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGN-QAQLAM 89 (229)
T ss_dssp EEEEESCCTTTC--------CHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHH-HHHHHH
T ss_pred EEEEeCCCcccC--------CHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHH-HHHHHH
Confidence 466889875 33 5678899 999987543 333333 789999998633 334444
No 250
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=26.15 E-value=31 Score=20.90 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=14.0
Q ss_pred eeeccCCCCCCcCccCchhHHhh
Q 006756 39 TLRCPFCSGKKKQDYKHKDLLQH 61 (632)
Q Consensus 39 ~~~CP~C~gkkK~dy~~~~LLqH 61 (632)
.|.|+.|+.. +.....|.+|
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H 21 (30)
T 1paa_A 2 AYACGLCNRA---FTRRDLLIRH 21 (30)
T ss_dssp CSBCTTTCCB---CSSSHHHHHH
T ss_pred CcCCcccCcc---cCChHHHHHH
Confidence 4899999733 3455667788
No 251
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=26.14 E-value=3.2e+02 Score=23.68 Aligned_cols=42 Identities=12% Similarity=0.271 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCC
Q 006756 391 VEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGD 432 (632)
Q Consensus 391 rEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~ 432 (632)
+-+..+..||.+|++++...+.=---+..|.+-..-=-+|++
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD 56 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGD 56 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 446678999999999887766655555555555554556664
No 252
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=26.04 E-value=35 Score=29.03 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=21.4
Q ss_pred cccCCc-eeeeeccCCC-CcceEEEEeCCChhc
Q 006756 149 AVFKPV-EVRIFWNEEN-PTAQAVVKFNNDWNG 179 (632)
Q Consensus 149 ~~F~p~-kv~~l~~~~G-h~G~aIV~F~~dw~G 179 (632)
+.|.++ .|....+..| ..|++.|.|.+.-..
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDA 81 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHH
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHH
Confidence 889865 4444445444 489999999876554
No 253
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=25.92 E-value=71 Score=27.43 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=5.1
Q ss_pred chhHHhhhcc
Q 006756 55 HKDLLQHASG 64 (632)
Q Consensus 55 ~~~LLqHA~g 64 (632)
.=+|+++-.|
T Consensus 70 ~i~fv~~~~~ 79 (103)
T 1d0q_A 70 AFTFLMDIEG 79 (103)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 3345555554
No 254
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=25.82 E-value=33 Score=21.91 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=16.0
Q ss_pred CCeeeccCCCCCCcCccCchhHHhhhc
Q 006756 37 NGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 37 ~~~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
...|.|+.|... +.....|.+|-.
T Consensus 5 ~k~~~C~~C~k~---f~~~~~l~~H~~ 28 (35)
T 1srk_A 5 KRPFVCRICLSA---FTTKANCARHLK 28 (35)
T ss_dssp CSCEECSSSCCE---ESSHHHHHHHHG
T ss_pred CcCeeCCCCCcc---cCCHHHHHHHHH
Confidence 457999999733 334556777754
No 255
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=25.76 E-value=4.6e+02 Score=25.29 Aligned_cols=70 Identities=24% Similarity=0.271 Sum_probs=45.7
Q ss_pred hhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 006756 267 EDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQ-RLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNK 342 (632)
Q Consensus 267 k~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ-~~ar~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k 342 (632)
+++.+++..+...-.++...+++-..|..+|..-...|+ ..+...+.. -|..-|...+.+.|.-|..|.+
T Consensus 79 e~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~------~L~~~L~~a~~e~eeeS~~l~~ 149 (192)
T 2p22_C 79 KQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDI------ALKKKLEQNTKKLDEESSQLET 149 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777777777788888866556663 333444443 3555666777777777777763
No 256
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=25.74 E-value=47 Score=36.36 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=27.6
Q ss_pred CChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 006756 140 DSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 140 ~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw 177 (632)
-|-.+|.+ |+.|.|+.-.+.|-..| -||||+|.+.-
T Consensus 64 ~~~~~l~~y~~~~g~i~~~~~~~~~g--~~~~vef~~~~ 100 (464)
T 3pq1_A 64 ISENKFLKYLSQFGPINNHFFYESFG--LYAVVEFCQKE 100 (464)
T ss_dssp ---CHHHHHHGGGSCCCCEEEECSSS--EEEEEECC---
T ss_pred CCHHHHHHHHHhcCCcceEEEEccCC--eEEEEEeCCHH
Confidence 36778888 99999999999998888 59999999853
No 257
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=25.56 E-value=1.3e+02 Score=28.21 Aligned_cols=96 Identities=23% Similarity=0.202 Sum_probs=55.1
Q ss_pred HHhhHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 006756 320 EKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSK 399 (632)
Q Consensus 320 ekl~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~k 399 (632)
+++..+|.++...+|.-+.+|+- +-+++..|.++... +.+.-...+| -+++..-+ ..|+...+.+
T Consensus 28 e~l~~~l~~~i~q~d~elqQLef-------q~kr~~~e~~~q~~--~~~~p~~~~q---i~~iq~q~---~~ek~~r~e~ 92 (150)
T 4dci_A 28 EEAEREISNGIANADQQLAQLEQ-------EGQTVVDQVRRQSA--NPLDPRVQEQ---VANIQQQV---AGKRSELEEQ 92 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTS--CTTCHHHHHH---HHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhccC--CCCChhHHHH---HHHHHHHH---HHHHHHHHHH
Confidence 35566777777778877777773 22333333332110 1111000000 01111122 3567778888
Q ss_pred HHHHHHHhhHHhhhhhhHHHhhhhHHHHhhc
Q 006756 400 ILQLEKQLDAKQKLEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 400 il~LekqL~~kQ~LELEi~qLkG~L~VmKh~ 430 (632)
+-+|..||.+-+.|+|.-+=..|+++-+=-+
T Consensus 93 k~~l~~ql~qv~~L~lGsEv~qg~vE~~v~V 123 (150)
T 4dci_A 93 KRNLLQQQAQVRELEMDQIVEQGQLESSCEI 123 (150)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEEEECCEE
T ss_pred HHHHHHHHHHHhcCCCcCEEeeceeeEEEEE
Confidence 9999999999999999877777777654444
No 258
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.47 E-value=76 Score=27.14 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=31.5
Q ss_pred cceEEEEeccc-cccCCccccCChhhHhh-hcccCCce-eeeeccCCCCcceEEEEeCCCh
Q 006756 120 PWMGIIVNIVM-ETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEENPTAQAVVKFNNDW 177 (632)
Q Consensus 120 PwmgII~Ni~t-e~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~~Gh~G~aIV~F~~dw 177 (632)
.+++-|-|+|. .. +..+|++ |+.|.++. |..+.+ .|+|.|+|...-
T Consensus 15 ~~~l~V~nLp~~~~--------te~dL~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~ 63 (102)
T 1x4d_A 15 RRVVHIMDFQRGKN--------LRYQLLQLVEPFGVISNHLILNK----INEAFIEMATTE 63 (102)
T ss_dssp CCEEEEESCCCSSS--------HHHHHHTTTGGGSCEEEEEECSS----SSCEEEEESSHH
T ss_pred CCEEEEeCCCCCcC--------CHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHH
Confidence 34566889975 32 5567888 99998644 444332 379999998754
No 259
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=25.35 E-value=1.9e+02 Score=25.13 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=16.4
Q ss_pred HhhhhhhHHHhhhhHHHHhhc
Q 006756 410 KQKLEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 410 kQ~LELEi~qLkG~L~VmKh~ 430 (632)
.-++-.||+.++++..||.-|
T Consensus 8 ~~k~~~el~~v~~n~~lL~EM 28 (103)
T 1wrd_A 8 IGKLRSELEMVSGNVRVMSEM 28 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999888876
No 260
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.29 E-value=32 Score=22.18 Aligned_cols=24 Identities=17% Similarity=0.479 Sum_probs=15.5
Q ss_pred CCeeeccCCCCCCcCccCchhHHhhhc
Q 006756 37 NGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 37 ~~~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
...|.|+.|... +.....|..|-.
T Consensus 7 ~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2elq_A 7 GKPFKCSLCEYA---TRSKSNLKAHMN 30 (36)
T ss_dssp CCSEECSSSSCE---ESCHHHHHHHHH
T ss_pred CCCccCCCCCch---hCCHHHHHHHHH
Confidence 457999999733 334455667743
No 261
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.24 E-value=2.9e+02 Score=29.03 Aligned_cols=90 Identities=22% Similarity=0.258 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh--hhhhHHHhhhhHHHHhhcCCCC--cHHHHHHHHHHHHHHHh
Q 006756 376 KKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQK--LEMEIEDLKGKLEVMKHLGDED--DAAVQKKMKEMNDELES 451 (632)
Q Consensus 376 ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~--LELEi~qLkG~L~VmKh~~~~~--d~~~~~k~~~l~~~l~e 451 (632)
+.+.+.+-+++++-+.+. ++.+.-..|++||+.-|+ +.+|-|--.-.+-||-.|.+=| -+.-.+||.+|+.++.+
T Consensus 376 ~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (471)
T 3mq9_A 376 KDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITT 454 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHhhHHH
Q 006756 452 KIDDLDEMESLNKTL 466 (632)
Q Consensus 452 k~~el~~~e~~nq~L 466 (632)
...+|++.++-...|
T Consensus 455 ~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 455 LNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
No 262
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.13 E-value=1.7e+02 Score=28.91 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhc
Q 006756 392 EKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 392 Eke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~ 430 (632)
|.+.+|..|.+|+.++. .|.-|+++|+...++.+||
T Consensus 116 EN~~Lh~~ie~l~eEi~---~LkeEn~eLkeLae~~q~l 151 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIA---RLKKENKELAEVAEHVQYM 151 (209)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 44555555555444432 5777777788888877776
No 263
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=24.95 E-value=61 Score=30.59 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=32.9
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhc
Q 006756 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNG 179 (632)
Q Consensus 123 gII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~G 179 (632)
+.|-|++.. .+...|.+ |+.|.++.-..++.. ...|++.|+|.+.-..
T Consensus 49 l~VgNL~~~--------vted~L~~~Fs~fG~V~~V~i~~k-~~rgfAFVeF~d~~~A 97 (164)
T 1sjr_A 49 IIVENLFYP--------VTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSA 97 (164)
T ss_dssp EEECSCCSC--------CCHHHHHHHHHHHSCEEEEEEEES-SSCEEEEEEESCHHHH
T ss_pred EEEeCcCCC--------CCHHHHHHHHHhcCCEEEEEEEeC-CCCCEEEEEECCHHHH
Confidence 457787642 35677899 999997655555433 3568999999765443
No 264
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=24.91 E-value=81 Score=27.12 Aligned_cols=31 Identities=35% Similarity=0.477 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHH
Q 006756 392 EKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLE 425 (632)
Q Consensus 392 Eke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~ 425 (632)
+++.+..+|..|+.|.+ +|+.+|+++..+|.
T Consensus 2 ~~~~L~~~i~~L~~q~~---~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKE---QLESSLQDALAKLK 32 (85)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Confidence 45678888888887765 78889999988874
No 265
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=24.91 E-value=65 Score=31.12 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhhcCCCCcccccccccccCccccHHHHH
Q 006756 579 MAVTTALKELNEYNPSGRYVIPDLWNFKEGRKATLKEVI 617 (632)
Q Consensus 579 ~aV~~Al~E~neyN~sgry~v~elWN~ke~rkAtl~E~~ 617 (632)
....+|+..||-+...||.+.-.+..-++.|++.+...+
T Consensus 237 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~ 275 (284)
T 3smz_A 237 EMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALI 275 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhhh
Confidence 467788999999999999988888888888888777654
No 266
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=24.70 E-value=1.5e+02 Score=31.63 Aligned_cols=56 Identities=23% Similarity=0.485 Sum_probs=38.6
Q ss_pred CCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhhccCCccccc--------ccccC
Q 006756 433 EDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIG--------VKRLG 504 (632)
Q Consensus 433 ~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~~~~~~~~~Ig--------iKrmG 504 (632)
++-++++..+..|.+++.+.++++. ++++....++..+..++...+.+| |++-|
T Consensus 68 ~~~~~l~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ipN~~~~~vp~g~~e~~n~~~~~~g 129 (425)
T 2dq3_A 68 KDTTEIQNRVKELKEEIDRLEEELR------------------KVEEELKNTLLWIPNLPHPSVPVGEDEKDNVEVRRWG 129 (425)
T ss_dssp SCTTTSTTHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHTSCCCCCTTSCCCSSGGGCEEEEEES
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCCCCCCCCCccCcEEEEEeC
Confidence 3445667778888888777776664 556666667777877766555555 89999
Q ss_pred CC
Q 006756 505 EI 506 (632)
Q Consensus 505 el 506 (632)
+-
T Consensus 130 ~~ 131 (425)
T 2dq3_A 130 EP 131 (425)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 267
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.58 E-value=89 Score=27.34 Aligned_cols=49 Identities=10% Similarity=0.023 Sum_probs=33.3
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChh
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWN 178 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~ 178 (632)
..++.|-|+|.. +.+...|++ |+.|.++.-..+-- ..|+|.|+|...-.
T Consensus 25 ~~~l~V~NLp~~-------~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~ 74 (112)
T 1x4f_A 25 GRVIHLSNLPHS-------GYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETRED 74 (112)
T ss_dssp CCEEEEESCCCS-------SCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHH
T ss_pred CCEEEEeCCCCc-------cCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHH
Confidence 456778898752 246678999 99998644333321 36899999987543
No 268
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.19 E-value=26 Score=21.31 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=14.2
Q ss_pred CeeeccCCCCCCcCccCchhHHhhh
Q 006756 38 GTLRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 38 ~~~~CP~C~gkkK~dy~~~~LLqHA 62 (632)
..|.|+.|+.. +..-..|..|-
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~ 23 (27)
T 2kvg_A 2 APYRCPLCRAG---CPSLASMQAHM 23 (27)
T ss_dssp CTEEETTTTEE---ESCHHHHHHHH
T ss_pred cCcCCCCCCcc---cCCHHHHHHHH
Confidence 46899999632 33445666774
No 269
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.82 E-value=38 Score=21.80 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=15.8
Q ss_pred CCeeeccCCCCCCcCccCchhHHhhhc
Q 006756 37 NGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 37 ~~~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
...|.|+.|... +.....|..|-.
T Consensus 7 ~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2elv_A 7 GLLYDCHICERK---FKNELDRDRHML 30 (36)
T ss_dssp CCCEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCeECCCCCCc---cCCHHHHHHHHH
Confidence 457999999733 334556677753
No 270
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.79 E-value=1e+02 Score=25.01 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=25.7
Q ss_pred CChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 006756 140 DSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 140 ~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~d 176 (632)
.+...|++ |+.|.++.-..+- -+.|+|.|.|.+.
T Consensus 25 ~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~ 59 (97)
T 1x5p_A 25 MTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKM 59 (97)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSH
T ss_pred CCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCH
Confidence 36788999 9999886555552 4678999999863
No 271
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.69 E-value=1.2e+02 Score=22.19 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=15.8
Q ss_pred HHHHHHHHhhHHHHHHHhhHH
Q 006756 314 RILEEQEKLSCELETKKKKLD 334 (632)
Q Consensus 314 rI~~e~ekl~~eLe~k~~eld 334 (632)
.++.+|+||..+|+.|-.++-
T Consensus 4 ~~L~ENekLhk~ie~KdeeIa 24 (37)
T 1t6f_A 4 EALKENEKLHKEIEQKDNEIA 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467889999998887765544
No 272
>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural genomics, PSI, protein initiative, northeast structural genomics consortium; 2.30A {Bacillus subtilis} SCOP: d.58.4.5
Probab=23.37 E-value=56 Score=29.39 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=43.8
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hc---ccCCceeeeeccCCCCcceEEEEeCCChhchhhHHHHHhhhhhcCC
Q 006756 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FA---VFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQ 195 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~---~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~lek~Fe~~~~ 195 (632)
|||..|+.+.+...+..-...-+..|.. +. ||-... .+.++.| . ...|-|=.|-.-|..-.+-..|-+++..
T Consensus 11 ~pm~aViFe~~~~~~~~~Y~~la~~~~~la~~qpGFI~~E--s~~~~dg-~-~is~SyW~deeai~aW~~~~eHr~Aq~~ 86 (122)
T 2go8_A 11 PPYYAVIFSSVKSENDTGYGETAERMVSLAADQPGFLGVE--SVREADG-R-GITVSYWDSMDAINHWRHHTEHQAAKEK 86 (122)
T ss_dssp SCEEEEEEEEECC------CHHHHHHHHHHHHSTTEEEEE--EEECTTS-E-EEEEEEESCHHHHHHHHHHC--------
T ss_pred CCEEEEEEEEEeCCchhHHHHHHHHHHHHHhhCCCceEEE--EEEcCCC-C-EEEEEEeCCHHHHHHHHhCHHHHHHHHh
Confidence 6777776655533221112333455555 22 455544 5666666 3 4566777788889999999999999999
Q ss_pred Chhhhhhh-cCC--CCCceeeeeeecCCCC
Q 006756 196 GKRHWIAR-KES--PGLRIYGWFARADDNT 222 (632)
Q Consensus 196 GRkdW~~~-~~~--~~~~LYGWvAradDy~ 222 (632)
||..|... +.. .--.=||+-.+..|+.
T Consensus 87 Gr~~w~~~y~~rv~~V~r~y~~~~~~~~~~ 116 (122)
T 2go8_A 87 GRSVWYESYAVRVAKVDRQRLFQENTNDLE 116 (122)
T ss_dssp -----CCEEEEEEEEECCCCCCCC------
T ss_pred HHHHHhccCcEEEEEEEEEecCCCCCcchh
Confidence 99999864 111 0124466655555543
No 273
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=23.27 E-value=3.4e+02 Score=22.95 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=40.4
Q ss_pred HHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 006756 340 LNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQK 412 (632)
Q Consensus 340 L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~ 412 (632)
+...+.+=-.-|+||....+.-......++..++.+..+. -..+.+||-+|.++|.....
T Consensus 14 ~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~-------------V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 14 ITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAA-------------VSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHh
Confidence 3333334445677887777766667788888888775433 34567889999998876544
No 274
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=22.97 E-value=1e+02 Score=29.10 Aligned_cols=46 Identities=20% Similarity=0.048 Sum_probs=31.2
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccC-CceeeeeccCCCCcceEEEEeCCC
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFK-PVEVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~-p~kv~~l~~~~Gh~G~aIV~F~~d 176 (632)
.++.|-|+|.. .+...|++ |+.|. ++.-..+.. ...|++.|.|.+.
T Consensus 152 ~~l~V~nlp~~--------~t~~~l~~~f~~~G~~i~~v~i~~--~~~g~afV~f~~~ 199 (229)
T 2adc_A 152 ATLHLSNIPPS--------VSEEDLKVLFSSNGGVVKGFKFFQ--KDRKMALIQMGSV 199 (229)
T ss_dssp SEEEEECCCTT--------CCHHHHHHHHHTTSCCEEEEEECS--SSTTCEEEEESSH
T ss_pred CEEEEeCCCcc--------CCHHHHHHHHHHcCCCeeEEEEEE--CCCcEEEEEECCH
Confidence 67788898753 35678899 99997 443333321 2368999999773
No 275
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=22.83 E-value=95 Score=28.95 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=34.2
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCCh
Q 006756 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDW 177 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aIV~F~~dw 177 (632)
++.|-|+|.. .+...|++ |+.|.++ .|+...+. .-+.|++.|.|.+..
T Consensus 17 tlfVgnLp~~--------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~ 68 (213)
T 4f02_A 17 SLYVGDLHPD--------VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 68 (213)
T ss_dssp EEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHH
Confidence 4567899763 36678999 9999875 45555443 346899999998643
No 276
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.41 E-value=2.8e+02 Score=23.71 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHH
Q 006756 310 DNVRRILEEQEKLSCELETKKKKLDSWSKQLNKRE 344 (632)
Q Consensus 310 ~~~~rI~~e~ekl~~eLe~k~~eld~r~k~L~k~~ 344 (632)
.-....+.+|++|..+++.+..++..-.+++..+.
T Consensus 31 ~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 31 KALYEALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556788999999999888777766555555443
No 277
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=22.27 E-value=22 Score=30.82 Aligned_cols=13 Identities=38% Similarity=0.884 Sum_probs=10.1
Q ss_pred CeeeccCCCCCCc
Q 006756 38 GTLRCPFCSGKKK 50 (632)
Q Consensus 38 ~~~~CP~C~gkkK 50 (632)
.++|||.|+|-.=
T Consensus 22 ~~LRCpvCqnqsI 34 (90)
T 2kw0_A 22 EELRCPKCQNNSI 34 (90)
T ss_dssp HSSBCSCTTSCTT
T ss_pred HcCcCCCCCCCch
Confidence 3599999997654
No 278
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=22.09 E-value=37 Score=27.07 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=11.8
Q ss_pred Eee-cCCeeeccCCCC
Q 006756 33 KVR-VNGTLRCPFCSG 47 (632)
Q Consensus 33 kVk-~~~~~~CP~C~g 47 (632)
.|- ...+|.||||..
T Consensus 26 ~~~~~~~~W~C~~C~~ 41 (59)
T 2yrc_A 26 QVDYRAKLWACNFCYQ 41 (59)
T ss_dssp EEEGGGTEEECSSSCC
T ss_pred EEECCCCEEEcccCCC
Confidence 555 567999999973
No 279
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.06 E-value=42 Score=19.80 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=13.6
Q ss_pred eeeccCCCCCCcCccCchhHHhhhc
Q 006756 39 TLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 39 ~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
.|.|+.|... +.....|..|-.
T Consensus 1 ~~~C~~C~k~---f~~~~~l~~H~~ 22 (27)
T 1znf_A 1 XYKCGLCERS---FVEKSALSRHQR 22 (27)
T ss_dssp -CBCSSSCCB---CSSHHHHHHHGG
T ss_pred CccCCCCCCc---CCCHHHHHHHHH
Confidence 3789999733 334556777753
No 280
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=22.05 E-value=5.4e+02 Score=28.20 Aligned_cols=101 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred hhhhhhhc-----cCCCCHHHHHHHhhhhHHH---HHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH-HHHHHHHH
Q 006756 227 IGEYLRQE-----GKLRTVSDIVQEDAQSKIH---VVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE-KDRLHYAF 297 (632)
Q Consensus 227 iG~~LrK~-----gdLKTi~ei~~E~~rk~~~---lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE-k~~lh~~y 297 (632)
+-+||.++ .+|..+.+++.+-++.+.. +|..|...+..+...+.+++...++.+..|.+.... ++.+...+
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~ 166 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNI 166 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006756 298 VEETRKMQRLARDNVRRILEEQEKLSCELE 327 (632)
Q Consensus 298 neE~~kmQ~~ar~~~~rI~~e~ekl~~eLe 327 (632)
-..|+.++........+|..-..++....+
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 281
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=22.00 E-value=24 Score=30.21 Aligned_cols=13 Identities=38% Similarity=0.907 Sum_probs=10.1
Q ss_pred CeeeccCCCCCCc
Q 006756 38 GTLRCPFCSGKKK 50 (632)
Q Consensus 38 ~~~~CP~C~gkkK 50 (632)
.++|||.|+|-.=
T Consensus 25 ~~LRCp~Cqnqsi 37 (84)
T 2hl7_A 25 QELRCPKCQNQDI 37 (84)
T ss_dssp HHEECTTSSSCBT
T ss_pred HcCcCCCCCCCch
Confidence 4599999997643
No 282
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.98 E-value=32 Score=22.26 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=15.7
Q ss_pred cCCeeeccCCCCCCcCccCchhHHhhhc
Q 006756 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 36 ~~~~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
....|.|+.|... +..-..|..|-.
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (37)
T 2elo_A 6 SGRSYSCPVCEKS---FSEDRLIKSHIK 30 (37)
T ss_dssp CCCCCEETTTTEE---CSSHHHHHHHHH
T ss_pred CCCCcCCCCCCCc---cCCHHHHHHHHH
Confidence 3567999999733 334455666743
No 283
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.40 E-value=45 Score=22.23 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=16.8
Q ss_pred cCCeeeccCCCCCCcCccCchhHHhhhc
Q 006756 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 36 ~~~~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
....|.|+.|... +.....|..|-.
T Consensus 7 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 31 (41)
T 2ept_A 7 GQRVYECQECGKS---FRQKGSLTLHER 31 (41)
T ss_dssp CCCCEECSSSCCE---ESSHHHHHHHGG
T ss_pred CCCCeECCCCCCC---cCCHHHHHHHHH
Confidence 3567999999733 334556777854
No 284
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.29 E-value=2.2e+02 Score=31.41 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhhccCCcccc-------cccccCCC
Q 006756 436 AAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNI-------GVKRLGEI 506 (632)
Q Consensus 436 ~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~~~~~~~~~I-------giKrmGel 506 (632)
++++..+.+|.++|.+.++++. ++++....++-.+..++...+.| =|++-|+.
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~------------------~~~~~l~~~l~~iPN~~~~~vP~g~e~~n~~v~~~g~~ 178 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEA------------------QLEEQFYLRALRLPNQTHPDVPVGDESQARVLHVVGDK 178 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHTTSCCCCCTTCCCSSGGGCEEEEEESCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCCCCCCCCCCCCeEEEEeCCC
Confidence 4566677777777766666653 55555566667777665433333 27888874
No 285
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.24 E-value=2.6e+02 Score=23.95 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhc
Q 006756 380 ENVLRLVEEQKV--------EKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 380 e~vlkLve~hkr--------Eke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~ 430 (632)
++.-+.+.++.| |.+.+|..|.+|+.++ ..|.-+.++|+..-++.+||
T Consensus 27 e~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi---~~lk~en~eL~elae~~q~m 82 (83)
T 1uii_A 27 SQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEI---ARLKKENKELAEVAEHVQYM 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
No 286
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=21.19 E-value=74 Score=27.23 Aligned_cols=8 Identities=63% Similarity=0.725 Sum_probs=4.3
Q ss_pred HHHHHHHH
Q 006756 475 DELQEARR 482 (632)
Q Consensus 475 dELq~aRk 482 (632)
+|||+|+.
T Consensus 43 ~eLq~A~~ 50 (90)
T 4b6x_A 43 DELQDAID 50 (90)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555554
No 287
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.15 E-value=43 Score=22.35 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=15.9
Q ss_pred cCCeeeccCCCCCCcCccCchhHHhhh
Q 006756 36 VNGTLRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 36 ~~~~~~CP~C~gkkK~dy~~~~LLqHA 62 (632)
....|.|+.|+.. +.....|..|-
T Consensus 8 ~~k~~~C~~C~k~---f~~~~~L~~H~ 31 (42)
T 2en2_A 8 GEKPYKCETCGAR---FVQVAHLRAHV 31 (42)
T ss_dssp SSCSEECTTTCCE---ESSHHHHHHHT
T ss_pred CCCCEeCCCcChh---hCCHHHHHHHH
Confidence 4568999999733 33455566674
No 288
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=20.98 E-value=3.6e+02 Score=23.21 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHH
Q 006756 417 IEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARREL 484 (632)
Q Consensus 417 i~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~l 484 (632)
+..+|.++++||. +-.....+.+.+..++.+.+......+.-...|-.|-+..-++|..+...|
T Consensus 4 MdaIKkKm~~lk~----e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L 67 (101)
T 3u1c_A 4 MDAIKKKMQMLKL----DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEEL 67 (101)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 289
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=20.96 E-value=9.4e+02 Score=27.18 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-hhhhhhHHHhhhhHHHHhhcC---CCCcHHHHHHHHHHHHHHHhHH
Q 006756 378 ADENVLRLVEEQKVEKEEALSKILQLEKQLDAK-QKLEMEIEDLKGKLEVMKHLG---DEDDAAVQKKMKEMNDELESKI 453 (632)
Q Consensus 378 ade~vlkLve~hkrEke~~~~kil~LekqL~~k-Q~LELEi~qLkG~L~VmKh~~---~~~d~~~~~k~~~l~~~l~ek~ 453 (632)
.=+++..+++..++.-+.++.+...-+.....= +..+-...=|..+-+.+-.++ .+.-++..++...+..+|....
T Consensus 579 rw~~L~~~~~~R~~~L~~~l~~~~~~~~l~~~F~~~a~~~~~Wi~e~e~~l~~~~~~~~~~le~~l~~~~~~~~el~~~~ 658 (863)
T 1sjj_A 579 KWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYK 658 (863)
T ss_dssp HHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCTTTSSHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHhH
Confidence 344566677666655555554333322221111 222333333444444443321 1234555688888888988888
Q ss_pred hhHHHHHHhhHHHHH
Q 006756 454 DDLDEMESLNKTLIA 468 (632)
Q Consensus 454 ~el~~~e~~nq~L~~ 468 (632)
..+..++.+++.|.-
T Consensus 659 ~~i~~l~~l~~~L~~ 673 (863)
T 1sjj_A 659 PKIDQLEGDHQQIQE 673 (863)
T ss_dssp GGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887777763
No 290
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=20.79 E-value=2.8e+02 Score=24.28 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=33.0
Q ss_pred hhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q 006756 420 LKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDL 491 (632)
Q Consensus 420 LkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~~~ 491 (632)
++..++-..+.|.+-+.+..+++.++..+|.. ...-..+.-.|..-+.=|++.-+.+..++.++
T Consensus 51 ~q~~~q~~q~~G~~~~~e~~~~l~~l~~~l~~--------n~~v~~~~~Ae~~l~~ll~~I~~iI~~~i~~~ 114 (122)
T 2oeq_A 51 IQLRLHEKQMRGAAILPDEIEQAQKAMALAQQ--------NEKLARLMALEQQMSITIAEVQQIAMKPLEEL 114 (122)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTT--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433456677777777776632 22333344444445555555555555555444
No 291
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.66 E-value=1.1e+02 Score=27.08 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=29.7
Q ss_pred EEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcce-EEEEeCCChh
Q 006756 124 IIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQ-AVVKFNNDWN 178 (632)
Q Consensus 124 II~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~-aIV~F~~dw~ 178 (632)
.|-|++.. .+...|.. |+.|.++.-..+... +|+ |.|+|.+.-.
T Consensus 29 ~V~NL~~~--------vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~ 74 (124)
T 2e5i_A 29 SIQNPLYP--------ITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLC 74 (124)
T ss_dssp EEESCCSC--------CCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHH
T ss_pred EEcCcCCC--------CCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHH
Confidence 36787642 35567888 999998665445443 486 9999976543
No 292
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.57 E-value=47 Score=22.74 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=16.4
Q ss_pred cCCeeeccCCCCCCcCccCchhHHhhhc
Q 006756 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 36 ~~~~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
....|.|+.|+.. +.....|..|-.
T Consensus 9 ~~~~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2emi_A 9 GERHYECSECGKA---FIQKSTLSMHQR 33 (46)
T ss_dssp SCCCEECSSSCCE---ESSHHHHHHHHG
T ss_pred CCCCCCCCCCCcc---cCCHHHHHHHHh
Confidence 4568999999733 334556667743
No 293
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=20.48 E-value=94 Score=30.03 Aligned_cols=53 Identities=9% Similarity=-0.012 Sum_probs=35.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 006756 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aIV~F~~dw~Gf~nA~~ 185 (632)
.++.|-|+|.. .+...|++ |+.|.++....+- -..|+|.|.|.+.-. -..|+.
T Consensus 23 ~~l~V~nLp~~--------~te~~l~~~F~~~G~i~~v~i~---~~kg~afV~f~~~~~-A~~A~~ 76 (261)
T 3sde_A 23 CRLFVGNLPTD--------ITEEDFKRLFERYGEPSEVFIN---RDRGFGFIRLESRTL-AEIAKA 76 (261)
T ss_dssp GEEEEESCCTT--------CCHHHHHHHTGGGCCCSEEEEE---TTTTEEEEECSSHHH-HHHHHH
T ss_pred CEEEEECCCCC--------CCHHHHHHHHHhcCCEEEEEEe---CCCcEEEEEECCHHH-HHHHHH
Confidence 45678899763 36788999 9999876554442 236899999986433 333443
No 294
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.37 E-value=48 Score=22.05 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=16.9
Q ss_pred cCCeeeccCCCCCCcCccCchhHHhhhc
Q 006756 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 36 ~~~~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
....|.|+.|... +.....|..|-.
T Consensus 8 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 32 (42)
T 2ytb_A 8 GEKPYRCDQCGKA---FSQKGSLIVHIR 32 (42)
T ss_dssp SCCSBCCTTTTCC---BSSHHHHHTTGG
T ss_pred CCCCeeCCCccch---hCCHHHHHHHHH
Confidence 4567999999733 344556777854
No 295
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=20.33 E-value=1.1e+03 Score=27.81 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=14.8
Q ss_pred HHhhhhhHHHHHHHhhhhhHHHHhHH
Q 006756 262 IDMKNEDLSELQCKFNETTMSLSRML 287 (632)
Q Consensus 262 I~~knk~l~elE~k~ne~t~sL~r~m 287 (632)
+...|=+++-+|..=..|..+|++..
T Consensus 633 lvitsVDvqsvEpvDqrtrd~LqkSV 658 (861)
T 2zuo_A 633 LVVSSVDVQSVEPVDQRTRDALQRSV 658 (861)
T ss_dssp EEEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred eEEEEEeeeeecccCHHHHHHHHHHH
Confidence 34445555555555566666666554
No 296
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=20.28 E-value=2.4e+02 Score=25.95 Aligned_cols=62 Identities=19% Similarity=0.331 Sum_probs=32.3
Q ss_pred hhhHHHhhhhHHHHhhc-----CCCCcH--------HHHHHHHHHHHHHHhHHhhHHHH-HHhhHHHHHHHhhccHHHHH
Q 006756 414 EMEIEDLKGKLEVMKHL-----GDEDDA--------AVQKKMKEMNDELESKIDDLDEM-ESLNKTLIAKERQSNDELQE 479 (632)
Q Consensus 414 ELEi~qLkG~L~VmKh~-----~~~~d~--------~~~~k~~~l~~~l~ek~~el~~~-e~~nq~L~~ker~sndELq~ 479 (632)
-.++..++++..||.-| +++... ++...+..++-.|..-.++..+- +.+.+.|- .||+|+.
T Consensus 50 ~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e~~ddee~l~elL~-----~ND~ln~ 124 (140)
T 1o3x_A 50 VNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQ-----ANDNLTQ 124 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH-----hhHHHHH
Confidence 33666688888877766 333222 23344455555555555444322 23444444 3666665
Q ss_pred H
Q 006756 480 A 480 (632)
Q Consensus 480 a 480 (632)
+
T Consensus 125 v 125 (140)
T 1o3x_A 125 V 125 (140)
T ss_dssp H
T ss_pred H
Confidence 4
No 297
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.26 E-value=49 Score=22.41 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=17.0
Q ss_pred cCCeeeccCCCCCCcCccCchhHHhhhc
Q 006756 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 36 ~~~~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
....|.|+.|... +.....|..|..
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2yu5_A 9 GENPFKCSKCDRV---FTQRNYLVQHER 33 (44)
T ss_dssp CCCSEECSSSSCE---ESSSHHHHHHHH
T ss_pred CCCCeECCCCCch---hCCHHHHHHHhH
Confidence 4567999999733 344566777754
No 298
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.22 E-value=48 Score=22.68 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=17.1
Q ss_pred cCCeeeccCCCCCCcCccCchhHHhhhc
Q 006756 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 36 ~~~~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
....|.|+.|... +.....|..|-.
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eq1_A 9 GEKPYKCNECGKA---FRAHSNLTTHQV 33 (46)
T ss_dssp CSCCCCCTTTTCC---CSSHHHHHHHHT
T ss_pred CCCCeECCcCChh---hCCHHHHHHHHH
Confidence 4568999999733 344566777754
No 299
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.16 E-value=49 Score=22.61 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=16.9
Q ss_pred cCCeeeccCCCCCCcCccCchhHHhhhc
Q 006756 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 36 ~~~~~~CP~C~gkkK~dy~~~~LLqHA~ 63 (632)
....|.|+.|... +.....|..|-.
T Consensus 9 ~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2enf_A 9 GEKPYKCNECGKV---FTQNSHLVRHRG 33 (46)
T ss_dssp CCCSCBCSSSCCB---CSSHHHHHHHHT
T ss_pred CCcCeECCCCCcc---cCCHHHHHHHHH
Confidence 4668999999733 344556777753
No 300
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=20.07 E-value=1.9e+02 Score=26.86 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=28.1
Q ss_pred cCChhhHhh-hcccCC-ceeeeeccCCC--CcceEEEEeCC
Q 006756 139 LDSGYWLKR-FAVFKP-VEVRIFWNEEN--PTAQAVVKFNN 175 (632)
Q Consensus 139 G~s~~~L~d-~~~F~p-~kv~~l~~~~G--h~G~aIV~F~~ 175 (632)
..+-..|++ |+.|.+ ..+...+++.. +.|++.|+|..
T Consensus 17 ~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 17 NIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 346788999 999997 55666666543 68999999996
No 301
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=20.06 E-value=2.5e+02 Score=31.23 Aligned_cols=154 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHhhHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHH
Q 006756 300 ETRKMQRLARDNVRRILEEQEKL------SCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASM 373 (632)
Q Consensus 300 E~~kmQ~~ar~~~~rI~~e~ekl------~~eLe~k~~eld~r~k~L~k~~a~~~~er~kL~~Ek~kn~~~~~~l~lA~~ 373 (632)
|+..|...|++.-.+--.|..+| |.+.|..+.+|+.|..+++.-.. .|..
T Consensus 301 e~qqm~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~ 356 (575)
T 2i1j_A 301 DVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEME------------------------RSQA 356 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------------------------HHHH
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHH
Q 006756 374 EQKKADENVLRLVEEQKVEKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKI 453 (632)
Q Consensus 374 EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~ 453 (632)
+-.++.+.+..|.|+-++..+++..=-.+ -.+.++.+..|....-+..++-..+-.++.+...+.....
T Consensus 357 ~l~~~~~~~~~l~e~~~~~~~e~~~l~~~-----------~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 425 (575)
T 2i1j_A 357 NLLEAQDMILRLEEQLRQLQAAKEELEQR-----------QNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQ 425 (575)
T ss_dssp HHHHHHHC------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhh
Q 006756 454 DDLDEMESLNKTLIAKERQSNDELQEARRELIQGL 488 (632)
Q Consensus 454 ~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l 488 (632)
++.+..+.--..|--.-+.+-..+.+|..+|....
T Consensus 426 ~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~~~ 460 (575)
T 2i1j_A 426 QEVELKDSETRRLQEEVEDARRKQDEAAAALLAAT 460 (575)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 302
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=20.03 E-value=6.3e+02 Score=27.69 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=41.0
Q ss_pred hhhhhhhccCCCCHHHHHHHhhhhHHHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006756 227 IGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQR 306 (632)
Q Consensus 227 iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~~kmQ~ 306 (632)
|-.||.|+ .--|....+....+|..++|.=.....+++.|..+++.. ++....++...+.|..+|..++.
T Consensus 82 lad~L~ky------e~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~----q~~~~~n~~~~~~s~~mle~~~~ 151 (461)
T 3ghg_B 82 LQEALLQQ------ERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKR----QKQVKDNENVVNEYSSELEKHQL 151 (461)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH----HHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhc------ccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccc----cCCCCcchhHHHHHHHHHHHHHH
Confidence 66777776 233444555555666666666666666777776666554 33344445555666666555444
Done!