Your job contains 1 sequence.
>006757
MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS
CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK
DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR
RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYT
CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA
PSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMK
REVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEG
EFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSN
VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVC
SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGR
RFFVCARAEGPASNPEANCGYFKWAFSKSKQK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006757
(632 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2135164 - symbol:AT4G36050 species:3702 "Arabi... 1520 6.3e-156 1
ZFIN|ZDB-GENE-040426-835 - symbol:apex2 "APEX nuclease (a... 423 1.3e-81 5
MGI|MGI:1924872 - symbol:Apex2 "apurinic/apyrimidinic end... 473 1.0e-73 4
UNIPROTKB|F1MSK4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 458 2.3e-70 4
UNIPROTKB|Q5E9N9 - symbol:APEX2 "DNA-(apurinic or apyrimi... 458 2.3e-70 4
UNIPROTKB|F1RUD3 - symbol:LOC100519003 "Uncharacterized p... 461 1.4e-69 3
UNIPROTKB|Q9UBZ4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 450 1.3e-67 3
UNIPROTKB|E2RCW8 - symbol:APEX2 "Uncharacterized protein"... 421 1.6e-66 4
UNIPROTKB|J9NYZ7 - symbol:APEX2 "Uncharacterized protein"... 420 2.2e-66 4
RGD|1586200 - symbol:Apex2l1 "APEX nuclease (apurinic/apy... 445 1.3e-65 3
RGD|1565983 - symbol:Apex2 "APEX nuclease (apurinic/apyri... 372 4.7e-52 3
POMBASE|SPBC3D6.10 - symbol:apn2 "AP-endonuclease Apn2" s... 349 1.8e-39 2
ASPGD|ASPL0000077623 - symbol:AN4736 species:162425 "Emer... 244 1.5e-35 5
UNIPROTKB|Q2KFC8 - symbol:MGCH7_ch7g758 "Putative unchara... 228 7.3e-32 4
SGD|S000000115 - symbol:APN2 "Class II abasic (AP) endonu... 164 5.1e-18 4
TAIR|locus:2060540 - symbol:ARP "apurinic endonuclease-re... 137 6.6e-14 3
GENEDB_PFALCIPARUM|PF14_0285 - symbol:PF14_0285 "exodeoxy... 120 1.4e-13 3
UNIPROTKB|Q8ILF8 - symbol:PF14_0285 "Exodeoxyribonuclease... 120 1.4e-13 3
TIGR_CMR|NSE_0415 - symbol:NSE_0415 "exodeoxyribonuclease... 160 2.3e-13 2
ZFIN|ZDB-GENE-040426-2761 - symbol:apex1 "APEX nuclease (... 134 4.3e-13 2
TIGR_CMR|CJE_0305 - symbol:CJE_0305 "exodeoxyribonuclease... 149 4.5e-13 3
TIGR_CMR|CBU_0297 - symbol:CBU_0297 "exodeoxyribonuclease... 120 7.5e-12 2
FB|FBgn0004584 - symbol:Rrp1 "Recombination repair protei... 135 7.7e-12 2
DICTYBASE|DDB_G0277701 - symbol:apeA "DNA-(apurinic or ap... 129 5.2e-11 3
UNIPROTKB|F1S8H5 - symbol:APEX1 "Uncharacterized protein"... 130 2.0e-10 2
RGD|2126 - symbol:Apex1 "APEX nuclease (multifunctional D... 129 3.4e-10 2
UNIPROTKB|Q9KQY7 - symbol:VC1860 "Exodeoxyribonuclease II... 113 3.9e-10 2
TIGR_CMR|VC_1860 - symbol:VC_1860 "exodeoxyribonuclease I... 113 3.9e-10 2
UNIPROTKB|P23196 - symbol:APEX1 "DNA-(apurinic or apyrimi... 128 7.1e-10 2
UNIPROTKB|P27695 - symbol:APEX1 "DNA-(apurinic or apyrimi... 126 7.5e-10 2
MGI|MGI:88042 - symbol:Apex1 "apurinic/apyrimidinic endon... 125 9.6e-10 2
UNIPROTKB|J9PA46 - symbol:APEX1 "Uncharacterized protein"... 125 9.7e-10 2
UNIPROTKB|A1YFZ3 - symbol:APEX1 "DNA-(apurinic or apyrimi... 125 9.7e-10 2
UNIPROTKB|A2T6Y4 - symbol:APEX1 "DNA-(apurinic or apyrimi... 125 9.7e-10 2
UNIPROTKB|A2T7I6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 122 2.1e-09 2
TIGR_CMR|SO_3037 - symbol:SO_3037 "exodeoxyribonuclease I... 107 4.0e-09 2
CGD|CAL0001657 - symbol:APN2 species:5476 "Candida albica... 136 4.4e-09 3
UNIPROTKB|P09030 - symbol:xthA "exonuclease III" species:... 113 5.3e-09 2
UNIPROTKB|Q9Z2J2 - symbol:APE "Apurinic/apyrimidinic endo... 119 5.8e-09 2
UNIPROTKB|A1YES6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 122 8.8e-09 2
UNIPROTKB|K7GNL1 - symbol:LOC100519003 "Uncharacterized p... 137 3.0e-08 1
TIGR_CMR|ECH_0675 - symbol:ECH_0675 "exodeoxyribonuclease... 134 4.8e-08 2
TIGR_CMR|APH_0505 - symbol:APH_0505 "exodeoxyribonuclease... 113 1.3e-06 2
TIGR_CMR|SPO_2509 - symbol:SPO_2509 "exodeoxyribonuclease... 96 2.4e-06 2
TIGR_CMR|GSU_1539 - symbol:GSU_1539 "exodeoxyribonuclease... 99 3.0e-06 2
UNIPROTKB|G3V3M6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 90 6.8e-06 2
TIGR_CMR|BA_3868 - symbol:BA_3868 "exodeoxyribonuclease I... 132 1.3e-05 2
WB|WBGene00001372 - symbol:exo-3 species:6239 "Caenorhabd... 125 4.2e-05 2
UNIPROTKB|E1C286 - symbol:E1C286 "Uncharacterized protein... 110 0.00012 3
UNIPROTKB|F1N383 - symbol:NEIL3 "Endonuclease 8-like 3" s... 125 0.00025 1
UNIPROTKB|Q3MHN7 - symbol:NEIL3 "Endonuclease 8-like 3" s... 125 0.00025 1
RGD|1310562 - symbol:Neil3 "nei endonuclease VIII-like 3 ... 127 0.00032 2
ZFIN|ZDB-GENE-041114-18 - symbol:neil3 "nei endonuclease ... 123 0.00039 1
UNIPROTKB|G3V359 - symbol:APEX1 "DNA-(apurinic or apyrimi... 90 0.00052 2
>TAIR|locus:2135164 [details] [associations]
symbol:AT4G36050 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR004808 InterPro:IPR010666
Pfam:PF06839 PROSITE:PS51435 Pfam:PF03372 EMBL:CP002687
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 KO:K10772
OMA:FIDSYRC IPI:IPI00517014 RefSeq:NP_974691.2 UniGene:At.22147
UniGene:At.74442 ProteinModelPortal:F4JNY0 SMR:F4JNY0 PRIDE:F4JNY0
EnsemblPlants:AT4G36050.2 GeneID:829761 KEGG:ath:AT4G36050
Uniprot:F4JNY0
Length = 610
Score = 1520 (540.1 bits), Expect = 6.3e-156, P = 6.3e-156
Identities = 309/522 (59%), Positives = 380/522 (72%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLRQRVSQF SL KLLDSFDADIICFQETKLRRQEL +DL +ADGYESFFS
Sbjct: 1 MKIVTYNVNGLRQRVSQFDSLLKLLDSFDADIICFQETKLRRQELTADLAIADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS--GSK-----IME 113
CTRTS+KGRTGYSGVATFCRVKS SS E ALPV AEEG TGL+ ++ G K + E
Sbjct: 61 CTRTSEKGRTGYSGVATFCRVKSASSSCETALPVTAEEGITGLVNSNSRGGKSETSTVAE 120
Query: 114 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 173
GLE++ K+ELL ID EGRCVITDHGHF++FNVYGPRA ++D RI+FK +F+ VL++RWE
Sbjct: 121 GLEEYEKEELLMIDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYGVLERRWE 180
Query: 174 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
LL QGRR+FVVGDLNIAP A+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHP
Sbjct: 181 CLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHP 240
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
ER++A+TCW S++GAEQFNYG+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YK
Sbjct: 241 ERKDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYK 300
Query: 294 RWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT 353
R+K N P+ RWKGG+ T+ +GSDH PV++ ++P+IP+HSTP LASRYLP+I G QQT
Sbjct: 301 RFKNENMPT-RWKGGLVTKFKGSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQT 359
Query: 354 LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSS 413
LVSV KR ++ K+ + S S +SN++ D S L N GI CS
Sbjct: 360 LVSVFKKRRANEEAKAIEVSCSSSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSF 416
Query: 414 SNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKS 473
N+ + G T+ E + ++ + S + SS D RKKA+K Q QLSLKS
Sbjct: 417 ENKSTSG-VTEA-ETVAATGSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKS 474
Query: 474 FFHKRSNVSH--DDNNSITDTSLNVN-NSVTDTSLSQEEVPE 512
FF S V++ D ++S +S + S+T+ ++S +E E
Sbjct: 475 FFTTNSKVNNVEDSSSSYVSSSPSSQVESITEPNVSGKEDSE 516
Score = 264 (98.0 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 74/213 (34%), Positives = 107/213 (50%)
Query: 409 VYCSSSNQESE----GEF-TKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 463
V CSSS Q + G+ T + NC S ++ + S + S V A A
Sbjct: 378 VSCSSSTQSNTSSICGDISTGPLRNC-GSMGISLEKSC---SFENKSTSGVTEAETVAAT 433
Query: 464 SQLGQLS--LKSFFHKRSNVSHDDNNS----ITDTSLNVNNSVTDTSLSQEEVPESHHHS 517
+ LS +++ + N+S D + I + L++ + T S S +
Sbjct: 434 GSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFTTNSKVNNVEDSSSSYV 493
Query: 518 NKIPVTDY-SCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 576
+ P + S + + G S + E+ K++N+ AL+EW+RIQ LM+ SI
Sbjct: 494 SSSPSSQVESITEPNVSGKEDSEPTTSTQEQDQTGSSAKQKNDAALMEWQRIQNLMQNSI 553
Query: 577 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 609
PLCKGHKE CVARVVKKPGPTFGRRF+VC+RAE
Sbjct: 554 PLCKGHKEACVARVVKKPGPTFGRRFYVCSRAE 586
>ZFIN|ZDB-GENE-040426-835 [details] [associations]
symbol:apex2 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
ZFIN:ZDB-GENE-040426-835 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:27301 HOVERGEN:HBG054715 KO:K10772 HSSP:P27695 EMBL:BC044527
IPI:IPI00484464 RefSeq:NP_956440.1 UniGene:Dr.116061
ProteinModelPortal:Q803D4 STRING:Q803D4 GeneID:393115
KEGG:dre:393115 InParanoid:Q803D4 NextBio:20814188
ArrayExpress:Q803D4 Uniprot:Q803D4
Length = 558
Score = 423 (154.0 bits), Expect = 1.3e-81, Sum P(5) = 1.3e-81
Identities = 102/233 (43%), Positives = 137/233 (58%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVT+N+NG+R + ++K+LDSFDADIIC QETK+ R L + DGY S+FS
Sbjct: 1 MKIVTWNINGIRTFKN---GIKKILDSFDADIICVQETKVTRDLLDEKTAIVDGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI-MEGLE-DF 118
+R GR+GYSGVAT+C+ + A P AEEG TGLL G+ I G + +
Sbjct: 58 FSR----GRSGYSGVATYCK--------DAATPFLAEEGLTGLLSNQGAVIGCYGDQVEL 105
Query: 119 SKDELLKIDSEGRCVITDHGHFI---------LFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
+ +ELL +D+EGR VIT H HFI + NVY PRAD + R +FKLQF+ +LQ
Sbjct: 106 TSEELLALDNEGRAVITQH-HFIGQDGLQKLTVINVYCPRADPDKPERKEFKLQFYRLLQ 164
Query: 170 KRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVES 220
R E +L G + ++GD+N + ID CD +F N R W L E+
Sbjct: 165 CRAEAILSSGSHVIILGDVNTSHRPIDHCDPDDVDNFEDNPGRKWLDQFLFET 217
Score = 195 (73.7 bits), Expect = 1.3e-81, Sum P(5) = 1.3e-81
Identities = 34/54 (62%), Positives = 38/54 (70%)
Query: 577 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 630
PLCK H EPCV R VKK GP GR+FFVCAR +G ASNP+A C +F W K K
Sbjct: 506 PLCKSHNEPCVLRTVKKAGPNLGRQFFVCARPQGHASNPQARCNFFAWV-EKGK 558
Score = 143 (55.4 bits), Expect = 1.3e-81, Sum P(5) = 1.3e-81
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 220 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
SGG F D FR HP+R A+TCW + TGA Q NYGTRID+I
Sbjct: 239 SGGKFVDSFRYFHPKRSNAFTCWSTLTGARQTNYGTRIDYI 279
Score = 75 (31.5 bits), Expect = 1.3e-81, Sum P(5) = 1.3e-81
Identities = 26/77 (33%), Positives = 36/77 (46%)
Query: 313 LEGSDHAPVYMCLG-EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCK 371
+EGSDH PV+ L + P+ P + +R++P G QQ L L K KQ S
Sbjct: 299 VEGSDHCPVWAQLSCTLQSSPR--CPPVCTRHMPEFIGRQQKLSRFLFKIP-EKQNISNS 355
Query: 372 FSGSLPAESNSTGDTED 388
SLP S G+ +
Sbjct: 356 SEKSLPG-SQDAGEIRE 371
Score = 41 (19.5 bits), Expect = 1.3e-81, Sum P(5) = 1.3e-81
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 424 KTIENCRDSANVASHSTI 441
K IE+C+D S+S I
Sbjct: 431 KQIESCQDGPGTGSNSKI 448
>MGI|MGI:1924872 [details] [associations]
symbol:Apex2 "apurinic/apyrimidinic endonuclease 2"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 MGI:MGI:1924872
GO:GO:0005634 GO:GO:0005743 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 CTD:27301
HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ EMBL:AB072498
EMBL:AB085235 EMBL:AK021248 EMBL:AK040145 EMBL:AK050858
EMBL:AK080916 EMBL:AK081677 EMBL:AK088918 EMBL:BC026769
EMBL:BC078633 IPI:IPI00225176 IPI:IPI00473955 IPI:IPI00473962
IPI:IPI00474999 IPI:IPI00828973 RefSeq:NP_084219.1
UniGene:Mm.440275 ProteinModelPortal:Q68G58 SMR:Q68G58
STRING:Q68G58 PhosphoSite:Q68G58 PRIDE:Q68G58
Ensembl:ENSMUST00000112725 Ensembl:ENSMUST00000112727 GeneID:77622
KEGG:mmu:77622 NextBio:347242 Bgee:Q68G58 CleanEx:MM_APEX2
Genevestigator:Q68G58 GermOnline:ENSMUSG00000025269 Uniprot:Q68G58
Length = 516
Score = 473 (171.6 bits), Expect = 1.0e-73, Sum P(4) = 1.0e-73
Identities = 110/290 (37%), Positives = 163/290 (56%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S+FS +R+ R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNSYFSFSRS----RSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H G L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLV 218
K++F+ +LQ R E LL G + ++GDLN A ID CDA F ++ R W +L
Sbjct: 170 KMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLS 229
Query: 219 ESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 230 NPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL 279
Score = 191 (72.3 bits), Expect = 1.0e-73, Sum P(4) = 1.0e-73
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 546 EKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC 605
E+K K K+ W+ + + +PLC GH+EPCV R VKK GP FGR+F++C
Sbjct: 435 EEKNKVPESKDEKGERTAFWKSMLS-GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMC 493
Query: 606 ARAEGPASNPEANCGYFKWA 625
AR GP S+P + C +F W+
Sbjct: 494 ARPRGPPSDPSSRCNFFLWS 513
Score = 75 (31.5 bits), Expect = 1.0e-73, Sum P(4) = 1.0e-73
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 315 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 362
GSDH PV L V +P P+L +R+LP G Q ++ L+ E
Sbjct: 300 GSDHCPVGAVLN-VSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 45 (20.9 bits), Expect = 1.0e-73, Sum P(4) = 1.0e-73
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 453 HVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE 512
H R RK + Q +L S+F S++S + + +L + +T T + EEV
Sbjct: 374 HSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQ--TSGVELPTLPLVGPLT-TPKTAEEVAT 430
Query: 513 SH--HHSNKIP 521
+ NK+P
Sbjct: 431 ATVLEEKNKVP 441
>UNIPROTKB|F1MSK4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005743 "mitochondrial inner
membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005743 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 IPI:IPI00696158 UniGene:Bt.1184
OMA:FIDSYRC EMBL:DAAA02073320 EMBL:DAAA02073321
Ensembl:ENSBTAT00000017537 ArrayExpress:F1MSK4 Uniprot:F1MSK4
Length = 514
Score = 458 (166.3 bits), Expect = 2.3e-70, Sum P(4) = 2.3e-70
Identities = 112/291 (38%), Positives = 164/291 (56%)
Query: 1 MKIVTYNVNGLRQ-----RVSQFGS-----LRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R R + S + ++LD DADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLSTQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
+ ++DF+++EL +DSEGR ++T H G L NVY P AD R+
Sbjct: 110 VGCYGNMDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 218 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL 280
Score = 188 (71.2 bits), Expect = 2.3e-70, Sum P(4) = 2.3e-70
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 576 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 625
+PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 462 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
Score = 68 (29.0 bits), Expect = 2.3e-70, Sum P(4) = 2.3e-70
Identities = 24/69 (34%), Positives = 30/69 (43%)
Query: 315 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 374
GSDH PV L V +P P L + +LP G Q ++ L+ KQ K S
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTCFLPEFAGTQLKILRFLVH---FKQDPVFKQSA 356
Query: 375 SLPAESNST 383
P SN T
Sbjct: 357 LQP--SNQT 363
Score = 38 (18.4 bits), Expect = 2.3e-70, Sum P(4) = 2.3e-70
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 456 RARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 486
R+R S GQ +L S+F S+ N
Sbjct: 378 RSRPSKTGSSRGQKNLMSYFQPSSSGPQTSN 408
>UNIPROTKB|Q5E9N9 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:BT020881 EMBL:BT021707 IPI:IPI00696158
RefSeq:NP_001015577.1 UniGene:Bt.1184 ProteinModelPortal:Q5E9N9
STRING:Q5E9N9 PRIDE:Q5E9N9 GeneID:511790 KEGG:bta:511790 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 InParanoid:Q5E9N9 KO:K10772
OrthoDB:EOG4NS3BQ NextBio:20870098 Uniprot:Q5E9N9
Length = 514
Score = 458 (166.3 bits), Expect = 2.3e-70, Sum P(4) = 2.3e-70
Identities = 112/291 (38%), Positives = 164/291 (56%)
Query: 1 MKIVTYNVNGLRQ-----RVSQFGS-----LRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R R + S + ++LD DADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLSTQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
+ ++DF+++EL +DSEGR ++T H G L NVY P AD R+
Sbjct: 110 VGCYGNMDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 218 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL 280
Score = 188 (71.2 bits), Expect = 2.3e-70, Sum P(4) = 2.3e-70
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 576 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 625
+PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 462 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
Score = 68 (29.0 bits), Expect = 2.3e-70, Sum P(4) = 2.3e-70
Identities = 24/69 (34%), Positives = 30/69 (43%)
Query: 315 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 374
GSDH PV L V +P P L + +LP G Q ++ L+ KQ K S
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTCFLPEFAGTQLKILRFLVH---FKQDPVFKQSA 356
Query: 375 SLPAESNST 383
P SN T
Sbjct: 357 LQP--SNQT 363
Score = 38 (18.4 bits), Expect = 2.3e-70, Sum P(4) = 2.3e-70
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 456 RARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 486
R+R S GQ +L S+F S+ N
Sbjct: 378 RSRPSKTGSSRGQKNLMSYFQPSSSGPQTSN 408
>UNIPROTKB|F1RUD3 [details] [associations]
symbol:LOC100519003 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 KO:K10772
OMA:FIDSYRC EMBL:CU856438 RefSeq:XP_003135157.1
Ensembl:ENSSSCT00000013503 GeneID:100519003 KEGG:ssc:100519003
Uniprot:F1RUD3
Length = 515
Score = 461 (167.3 bits), Expect = 1.4e-69, Sum P(3) = 1.4e-69
Identities = 112/291 (38%), Positives = 167/291 (57%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + G ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRSHLQGAGYEEPSNCTARAVGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET-SGS 109
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T +G
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLATLNGD 109
Query: 110 KIMEG-LEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
G +++F+++EL +DSEGR ++T H G + NVY P AD R+
Sbjct: 110 VNCYGNMDEFTQEELRALDSEGRALLTQHKIRTQDGDEKSLTVINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+H+LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYHLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLL 229
Query: 218 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
++G G F D +R P+++ A+TCW + TGA NYG+RID++L
Sbjct: 230 SNLRCQAGSHMGPFIDSYRYFQPKQKGAFTCWSTVTGARHLNYGSRIDYVL 280
Score = 195 (73.7 bits), Expect = 1.4e-69, Sum P(3) = 1.4e-69
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 555 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 614
K++ V L W+ + + PLC GH+EPCV R VKKPGP GR F++CAR +GP ++
Sbjct: 443 KDKKEVRSLFWKSLLR-GPLPTPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTD 501
Query: 615 PEANCGYFKWA 625
P + C +F W+
Sbjct: 502 PSSRCNFFLWS 512
Score = 80 (33.2 bits), Expect = 1.4e-69, Sum P(3) = 1.4e-69
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 315 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 362
GSDH PV L P +P P L +R+LP G Q ++ L++ E
Sbjct: 301 GSDHCPVGAVLNVSP-VPAKQCPPLCTRFLPEFAGTQLKILRFLVRLE 347
>UNIPROTKB|Q9UBZ4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0005743
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0007049 GO:GO:0006310 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ
EMBL:AB049211 EMBL:AJ011311 EMBL:AB021260 EMBL:AF119046
EMBL:AY884244 EMBL:AL020991 EMBL:BC002959 IPI:IPI00083281
RefSeq:NP_055296.2 UniGene:Hs.659558 ProteinModelPortal:Q9UBZ4
SMR:Q9UBZ4 IntAct:Q9UBZ4 MINT:MINT-1439290 STRING:Q9UBZ4
PhosphoSite:Q9UBZ4 DMDM:73921676 PeptideAtlas:Q9UBZ4 PRIDE:Q9UBZ4
DNASU:27301 Ensembl:ENST00000374987 GeneID:27301 KEGG:hsa:27301
UCSC:uc004dtz.3 GeneCards:GC0XP055043 HGNC:HGNC:17889 HPA:HPA030872
MIM:300773 neXtProt:NX_Q9UBZ4 PharmGKB:PA38474 InParanoid:Q9UBZ4
OMA:FIDSYRC PhylomeDB:Q9UBZ4 GenomeRNAi:27301 NextBio:50285
ArrayExpress:Q9UBZ4 Bgee:Q9UBZ4 CleanEx:HS_APEX2
Genevestigator:Q9UBZ4 GermOnline:ENSG00000169188 Uniprot:Q9UBZ4
Length = 518
Score = 450 (163.5 bits), Expect = 1.3e-67, Sum P(3) = 1.3e-67
Identities = 110/291 (37%), Positives = 161/291 (55%)
Query: 1 MKIVTYNVNGLR--------QRVSQFGSLR--KLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R Q S ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H G L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL 280
Score = 190 (71.9 bits), Expect = 1.3e-67, Sum P(3) = 1.3e-67
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 577 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 625
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
Score = 77 (32.2 bits), Expect = 1.3e-67, Sum P(3) = 1.3e-67
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 315 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 362
GSDH PV L V +P P L +R+LP G Q ++ L+ E
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
>UNIPROTKB|E2RCW8 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 EMBL:AAEX03026400
EMBL:AAEX03026401 Ensembl:ENSCAFT00000022737 Uniprot:E2RCW8
Length = 515
Score = 421 (153.3 bits), Expect = 1.6e-66, Sum P(4) = 1.6e-66
Identities = 104/291 (35%), Positives = 160/291 (54%)
Query: 1 MKIVTYNVNGLR--------QRVSQFGSLR--KLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + S ++ ++LD DADI+C QETK+ + L
Sbjct: 2 LRVVSWNINGIRSPLQGMVYEEPSNCAAMAMGRILDKLDADIVCLQETKVTSERXXXXLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+ +R R+GYSGVATFC+ + A P+AAEEG +GLL T
Sbjct: 62 IIEGYNSYSFFSRN----RSGYSGVATFCK--------DSATPMAAEEGLSGLLATHNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H G L NVY P AD+ R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKQKTLTLINVYCPHADAGKPERLT 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWMDGLL 229
Query: 218 VESG---GS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
G GS F D +R P++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL 280
Score = 186 (70.5 bits), Expect = 1.6e-66, Sum P(4) = 1.6e-66
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 576 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 625
+PLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 463 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 512
Score = 75 (31.5 bits), Expect = 1.6e-66, Sum P(4) = 1.6e-66
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 315 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 359
GSDH PV L V +P P L +R+LP G Q ++ L+
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLV 344
Score = 43 (20.2 bits), Expect = 1.6e-66, Sum P(4) = 1.6e-66
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 456 RARKKAKKSQLGQLSLKSFFHKRSN 480
R R S GQ SL S+F SN
Sbjct: 378 RLRPNQTGSSRGQKSLTSYFQPSSN 402
>UNIPROTKB|J9NYZ7 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 OMA:FIDSYRC
EMBL:AAEX03026400 EMBL:AAEX03026401 Ensembl:ENSCAFT00000049032
Uniprot:J9NYZ7
Length = 515
Score = 420 (152.9 bits), Expect = 2.2e-66, Sum P(4) = 2.2e-66
Identities = 105/291 (36%), Positives = 160/291 (54%)
Query: 1 MKIVTYNVNGLR--------QRVSQFGSLR--KLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + S ++ ++LD DADI+C QETK+ L L
Sbjct: 2 LRVVSWNINGIRSPLQGMVYEEPSNCAAMAMGRILDKLDADIVCLQETKVTTHVLCQXLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+ +R R+GYSGVATFC+ + A P+AAEEG +GLL T
Sbjct: 62 IIEGYNSYSFFSRN----RSGYSGVATFCK--------DSATPMAAEEGLSGLLATHNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H G L NVY P AD+ R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKQKTLTLINVYCPHADAGKPERLT 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWMDGLL 229
Query: 218 VESG---GS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
G GS F D +R P++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL 280
Score = 186 (70.5 bits), Expect = 2.2e-66, Sum P(4) = 2.2e-66
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 576 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 625
+PLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 463 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 512
Score = 75 (31.5 bits), Expect = 2.2e-66, Sum P(4) = 2.2e-66
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 315 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 359
GSDH PV L V +P P L +R+LP G Q ++ L+
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLV 344
Score = 43 (20.2 bits), Expect = 2.2e-66, Sum P(4) = 2.2e-66
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 456 RARKKAKKSQLGQLSLKSFFHKRSN 480
R R S GQ SL S+F SN
Sbjct: 378 RLRPNQTGSSRGQKSLTSYFQPSSN 402
>RGD|1586200 [details] [associations]
symbol:Apex2l1 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2-like 1" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 RGD:1586200 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
KO:K10772 OrthoDB:EOG4NS3BQ OMA:FIDSYRC IPI:IPI00364584
RefSeq:XP_001059968.1 RefSeq:XP_223499.3 PRIDE:D3ZHV4
Ensembl:ENSRNOT00000038157 GeneID:289662 KEGG:rno:289662
NextBio:630125 Uniprot:D3ZHV4
Length = 516
Score = 445 (161.7 bits), Expect = 1.3e-65, Sum P(3) = 1.3e-65
Identities = 110/290 (37%), Positives = 165/290 (56%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R+ + G +LR +L DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRRPLQGLGCEVTSNCPTALRHILRELDADIVCLQETKVSRDALTEPLAV 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET-SGSK 110
+GY S+FS +R+ R+GYSGVATFC+ + PVAAEEG +G T SG
Sbjct: 62 VEGYNSYFSFSRS----RSGYSGVATFCK--------DSVTPVAAEEGLSGQFATLSGHV 109
Query: 111 IMEG-LEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQF 160
G + +F++++L +DSEGR ++T H G L NVY P A + R+ F
Sbjct: 110 GCYGNMNEFTQEQLRALDSEGRALLTQHKICTQEGKEKPLTLINVYCPHASPGNHERLTF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML- 217
K++F+ +LQ R E LL G + ++GD+N A ID C+AG F ++ R W +L
Sbjct: 170 KMRFYRLLQIRAEALLAAGSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMDGLLS 229
Query: 218 -VE--SG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
+E +G G F D +R +P++ A+TCW +GA NYGTR+D+IL
Sbjct: 230 NLEYPAGSHIGPFMDSYRYFYPKQERAFTCWSMISGARSLNYGTRLDYIL 279
Score = 178 (67.7 bits), Expect = 1.3e-65, Sum P(3) = 1.3e-65
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 576 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 625
+PLC GH+EPCV R+VKKPGP GR F+ CA+ +GP ++ ++C +F W+
Sbjct: 464 MPLCGGHREPCVMRIVKKPGPNLGRHFYTCAKPQGPPNDLSSSCNFFLWS 513
Score = 75 (31.5 bits), Expect = 1.3e-65, Sum P(3) = 1.3e-65
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 315 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 362
GSDH PV L V +P P+L +R+LP G Q ++ L+ E
Sbjct: 300 GSDHCPVGAVLN-VSCVPAKQCPALCTRFLPEFAGTQLKILGFLVPCE 346
>RGD|1565983 [details] [associations]
symbol:Apex2 "APEX nuclease (apurinic/apyrimidinic endonuclease)
2" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO] [GO:0005743
"mitochondrial inner membrane" evidence=ISO] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
RGD:1565983 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 OrthoDB:EOG4NS3BQ IPI:IPI00949933
Ensembl:ENSRNOT00000066573 ArrayExpress:D4A344 Uniprot:D4A344
Length = 521
Score = 372 (136.0 bits), Expect = 4.7e-52, Sum P(3) = 4.7e-52
Identities = 103/296 (34%), Positives = 150/296 (50%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLAGQEPSNSPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYS-------GVATFCRVKSPFSSTEVALPVAAEEGFTGLL 104
+GY S+FS +R+ R+GYS GVATFC+ + A PVAAEEG +G+
Sbjct: 62 VEGYNSYFSFSRS----RSGYSECPCLSPGVATFCK--------DSATPVAAEEGLSGVF 109
Query: 105 ETSGSKI--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSE 153
T I ++F+++EL +DSEGR +T H G L NVY P AD
Sbjct: 110 ATLNGDIGCYGNTDEFTQEELRVLDSEGRAFLTQHKIRTLEGKEKTLTLINVYCPHADPG 169
Query: 154 DTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRI 211
R+ FK++F+ +LQ R E LL G + ++GDLN A ID CDA F N R
Sbjct: 170 KPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFQSNPLRE 229
Query: 212 WFRSMLVESGG-----SFFDVFRSK-HPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
W + GG S F V+ HP ++ + W + + Y ID++L
Sbjct: 230 WLDYSRMNPGGEQAPVSLFCVYYIYLHPHQQWVWEEWTPLSSSYHVCYIVSIDYVL 285
Score = 190 (71.9 bits), Expect = 4.7e-52, Sum P(3) = 4.7e-52
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 555 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 614
K+ V W+ + + +PLC GH+EPCV R VKK GP FGR F++CAR GP S+
Sbjct: 449 KDEKEVRTAFWKSMLS-GPSPMPLCGGHREPCVMRTVKKAGPNFGRHFYMCARPRGPPSD 507
Query: 615 PEANCGYFKWA 625
P + C +F W+
Sbjct: 508 PSSRCNFFLWS 518
Score = 57 (25.1 bits), Expect = 4.7e-52, Sum P(3) = 4.7e-52
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 453 HVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE 512
H R RK + Q SL S+F SN+S + + +L + + +T T ++E
Sbjct: 379 HSTRLRKTQGVPKRNQKSLMSYFQPSSNLSQTSDVELP--TLPLVSPLTSTKTAEEVAMA 436
Query: 513 SH-HHSNKIP 521
+ NK+P
Sbjct: 437 TVVKEKNKVP 446
>POMBASE|SPBC3D6.10 [details] [associations]
symbol:apn2 "AP-endonuclease Apn2" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004528 "phosphodiesterase I activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006284 "base-excision
repair" evidence=IC] [GO:0008311 "double-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IMP] [GO:0034614
"cellular response to reactive oxygen species" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 PomBase:SPBC3D6.10
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0034614 GO:GO:0004519
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 GO:GO:0004528 KO:K10772
OMA:FIDSYRC GO:GO:0008311 EMBL:AY483158 PIR:T40370
RefSeq:NP_595522.1 ProteinModelPortal:P87175 STRING:P87175
EnsemblFungi:SPBC3D6.10.1 GeneID:2540679 KEGG:spo:SPBC3D6.10
OrthoDB:EOG4GQTDH NextBio:20801803 Uniprot:P87175
Length = 523
Score = 349 (127.9 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 104/354 (29%), Positives = 165/354 (46%)
Query: 1 MKIVTYNVNGLRQRVSQF-----GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+++NVNG++ + F S +++ AD+IC QE K+++ + +G+
Sbjct: 1 MRILSWNVNGIQNPFNYFPWNKKNSYKEIFQELQADVICVQELKMQKDSFPQQYAVVEGF 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCR--VKSPFSSTEVA---LPVAAEEGFTGLLETSGSK 110
+S+F T K R GYSGV + + V P + E LPV ++ ++ K
Sbjct: 61 DSYF----TFPKIRKGYSGVGFYVKKDVAIPVKAEEGITGILPVRGQK-YSYSEAPEHEK 115
Query: 111 IMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQK 170
I +D + IDSEGRC++ D FIL VY P E+ R++++ F+ L++
Sbjct: 116 IGFFPKDIDRKTANWIDSEGRCILLDFQMFILIGVYCPVNSGEN--RLEYRRAFYKALRE 173
Query: 171 RWEFLLCQG-RRIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESG-G 222
R E L+ +G R+I +VGD+NI ID D ++ E R W R +L+ S G
Sbjct: 174 RIERLIKEGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSIMESRQWIRDLLLPSRLG 233
Query: 223 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHDLQSHNFVT 280
D+ R +HP R+ +TCW + NYGTRID+ L L Q D+ + +
Sbjct: 234 LLLDIGRIQHPTRKGMFTCWNTRLNTRPTNYGTRIDYTLATPDLLPWVQDADIMAEVMGS 293
Query: 281 CHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 334
H C + +D K G S L + H Y + + QH
Sbjct: 294 DH---CPVYLDLKEEYEGKKLSNFLSHSKEPPLLSTAHHSAYRPSKNIHSMFQH 344
Score = 133 (51.9 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 535 VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP 594
V+ V ++ + G K N A W++I E + PLC+GHKEPC V+KP
Sbjct: 419 VSIEVLDNNNESDIGLTVKKKVENGNA---WKQI--FSERAPPLCEGHKEPCKYLTVRKP 473
Query: 595 GPTFGRRFFVCARAEG 610
G +GR+F++CAR G
Sbjct: 474 GINYGRKFWICARPVG 489
Score = 57 (25.1 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 427 ENCRDSANVASHSTITQGSSN-HISPFHVDRARKKAKKSQLG----QLSLKSFFHKRSNV 481
EN SA+ S T+++ +S + + ++ R+K + L Q K +K +V
Sbjct: 360 ENVSASASSGSSPTVSRANSVIDVDAYPPEKRRRKEQSKLLSFFAKQKEEKEETNKTEDV 419
Query: 482 SHD--DNNSITDTSLNVNNSV 500
S + DNN+ +D L V V
Sbjct: 420 SIEVLDNNNESDIGLTVKKKV 440
Score = 52 (23.4 bits), Expect = 5.6e-31, Sum P(2) = 5.6e-31
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 360 KREVAKQGKSCKFSGSLPAESNSTGDTEDCS-ENVDRSLNNYCDSGI 405
KR +Q K F E T TED S E +D NN D G+
Sbjct: 390 KRRRKEQSKLLSFFAKQKEEKEETNKTEDVSIEVLDN--NNESDIGL 434
Score = 39 (18.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 405 ILQGVYCSSSNQESEGEFTK 424
IL GVYC ++ E+ E+ +
Sbjct: 146 ILIGVYCPVNSGENRLEYRR 165
>ASPGD|ASPL0000077623 [details] [associations]
symbol:AN4736 species:162425 "Emericella nidulans"
[GO:0034614 "cellular response to reactive oxygen species"
evidence=IEA] [GO:0008311 "double-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 EMBL:BN001303 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 OMA:FIDSYRC
EnsemblFungi:CADANIAT00005693 HOGENOM:HOG000193944 Uniprot:C8VAT9
Length = 612
Score = 244 (91.0 bits), Expect = 1.5e-35, Sum P(5) = 1.5e-35
Identities = 67/202 (33%), Positives = 105/202 (51%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 24 TFESMFDILEADIVVVQETKIQRKDLRDDMVLVPGWDCYFSLPKV----KKGYSGVAIYT 79
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKI----------MEG---LEDFSKDEL--L 124
R ++T P+ AEEG TG L S + + G +E SK +L
Sbjct: 80 R-----NAT--CAPIRAEEGLTGTLCPPNSLVSFRDLPEDQQIGGYPTIEQLSKLKLDAE 132
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCVI + F+L +Y P + D R F+ F ++ R L+ G+R+FV
Sbjct: 133 TLDSEGRCVILEFPAFVLIGLYCPA--NRDESRDAFRQNFLDLMDARVRNLVALGKRVFV 190
Query: 185 VGDLNIAPAAIDRCDAGPDFAK 206
GD+NI+ ID A + K
Sbjct: 191 TGDINISRGEIDAAHAAENIKK 212
Score = 127 (49.8 bits), Expect = 1.5e-35, Sum P(5) = 1.5e-35
Identities = 24/53 (45%), Positives = 29/53 (54%)
Query: 577 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 625
P C H E C++ KKPGP FGR F++C R GP+ N E C F WA
Sbjct: 552 PKCGEHGEECISLKTKKPGPNFGRTFWICPRPLGPSGNKEKGTEWRCSTFIWA 604
Score = 123 (48.4 bits), Expect = 1.5e-35, Sum P(5) = 1.5e-35
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
FD+ RS HP+R+ YTCW A NYG+RID++LC+
Sbjct: 252 FDICRSFHPKRKGMYTCWEQRINARPGNYGSRIDYVLCS 290
Score = 44 (20.5 bits), Expect = 1.5e-35, Sum P(5) = 1.5e-35
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 313 LEGSDHAPVY 322
L GSDH PVY
Sbjct: 306 LMGSDHCPVY 315
Score = 44 (20.5 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 405 ILQGVYCSSSNQESEGEFTKTIENCRDS 432
+L G+YC ++ ES F + + D+
Sbjct: 149 VLIGLYCPANRDESRDAFRQNFLDLMDA 176
Score = 42 (19.8 bits), Expect = 1.5e-35, Sum P(5) = 1.5e-35
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 466 LGQLSLKSFFHKRSNVSHDDN 486
+GQ +LK FF + + DN
Sbjct: 461 IGQSTLKGFFKPKCTLEPKDN 481
>UNIPROTKB|Q2KFC8 [details] [associations]
symbol:MGCH7_ch7g758 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 EMBL:CM000230
ProteinModelPortal:Q2KFC8 Uniprot:Q2KFC8
Length = 626
Score = 228 (85.3 bits), Expect = 7.3e-32, Sum P(4) = 7.3e-32
Identities = 66/202 (32%), Positives = 102/202 (50%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ QE K++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 1 MFDILEADIVVIQEAKIQRKDLQDDMVLVPGWDVYFSLP----KFKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLL--ETSGSKIMEGLED-----FSK-DELLKI------DSE 129
S++ + P+ AEEG TG+L S +K E D + + D+L I DSE
Sbjct: 54 ---SSKCS-PIRAEEGITGILCPPNSTTKFRELSPDQQIGGYPRPDQLSDIIDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRC+I + F+L VY P + D R F+ F + R L+ G+++ + GDLN
Sbjct: 110 GRCMILEFPAFVLIGVYSPA--TRDETRTDFRQAFHKAMDARVRNLVAMGKQVVLTGDLN 167
Query: 190 IAPAAIDRCDAGPDFAKNEFRI 211
I +D K E I
Sbjct: 168 IIRNELDTAGILERLRKEEMTI 189
Score = 131 (51.2 bits), Expect = 7.3e-32, Sum P(4) = 7.3e-32
Identities = 54/206 (26%), Positives = 87/206 (42%)
Query: 430 RDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSI 489
+ SA+ + T+ S+++ + VDRA GQ SL FF ++ +S +
Sbjct: 424 KSSASNSRPQKKTKVSTSNTAKNSVDRAP--------GQKSLTGFFKPKNPISTPATDG- 474
Query: 490 TDTSLNVNNSVTDTS-LSQEEVPESHHHSNKIPVTDYS----CSVHELHGVNSSVCSHDQ 544
TS+ S T S S ++P + ++K S L+G S +
Sbjct: 475 ERTSIRTTPSPTKCSNASTPKIPGASTFTSKGDQEGASQGTETGAEPLNGGRSFNSGKED 534
Query: 545 DEKKGKRFLDKERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 603
D K + + E W ++ L + +P C+ H EPC++ KKPG GR F+
Sbjct: 535 DTGASLSESPKVFDPIENKESWSKL--LKKRIVPKCE-HDEPCISLQTKKPGINCGRSFY 591
Query: 604 VCARAEGPASNPEAN----CGYFKWA 625
+C R GP+ E CG F W+
Sbjct: 592 ICGRPLGPSGEKEKGTEWRCGTFIWS 617
Score = 106 (42.4 bits), Expect = 7.3e-32, Sum P(4) = 7.3e-32
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+D+ R HP+R YTCW + A N+G+RID++LC+
Sbjct: 224 YDLGREFHPDRIGMYTCWETRKNARPGNFGSRIDYVLCS 262
Score = 47 (21.6 bits), Expect = 7.3e-32, Sum P(4) = 7.3e-32
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 313 LEGSDHAPVYMCLGE 327
L GSDH PVY L +
Sbjct: 278 LLGSDHCPVYATLSD 292
Score = 39 (18.8 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 405 ILQGVYCSSSNQESEGEFTKTIENCRDS 432
+L GVY ++ E+ +F + D+
Sbjct: 121 VLIGVYSPATRDETRTDFRQAFHKAMDA 148
>SGD|S000000115 [details] [associations]
symbol:APN2 "Class II abasic (AP) endonuclease involved in
repair of DNA damage" species:4932 "Saccharomyces cerevisiae"
[GO:0016829 "lyase activity" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IC]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008081
"phosphoric diester hydrolase activity" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IGI] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020848 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 SGD:S000000115
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
GO:GO:0008270 EMBL:BK006936 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
GeneTree:ENSGT00530000063540 GO:GO:0008081 KO:K10772 GO:GO:0008311
OrthoDB:EOG4GQTDH EMBL:Z35780 EMBL:AY693183 PIR:S45753
RefSeq:NP_009534.1 ProteinModelPortal:P38207 DIP:DIP-3930N
IntAct:P38207 MINT:MINT-515848 STRING:P38207 EnsemblFungi:YBL019W
GeneID:852262 KEGG:sce:YBL019W CYGD:YBL019w HOGENOM:HOG000246560
OMA:MYTVWNT NextBio:970856 Genevestigator:P38207 GermOnline:YBL019W
Uniprot:P38207
Length = 520
Score = 164 (62.8 bits), Expect = 5.1e-18, Sum P(4) = 5.1e-18
Identities = 60/209 (28%), Positives = 92/209 (44%)
Query: 13 QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTG 71
Q SQ SLR + D F ADII FQE K + + S DG+ SF S +T KG +G
Sbjct: 34 QPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDGFYSFISIPQTR-KGYSG 91
Query: 72 YSGVATFCRVKSP-FSSTEVALPVAAEEGFTGLLETSGSKIM------EGL-------ED 117
P + + +V G+ + S I +G+ D
Sbjct: 92 VGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSAISYRNDVNQGIGGYDSLDPD 151
Query: 118 FSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 176
+ L++DSEGRCV+ + ++ +VY P + F+L+F VL +R L
Sbjct: 152 LDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGEMFRLRFLKVLLRRVRNLD 211
Query: 177 CQGRRIFVVGDLNIAPAAIDRCDAGPDFA 205
G++I ++GD+N+ ID D F+
Sbjct: 212 KIGKKIVLMGDVNVCRDLIDSADTLEQFS 240
Score = 154 (59.3 bits), Expect = 7.1e-17, Sum P(4) = 7.1e-17
Identities = 47/117 (40%), Positives = 59/117 (50%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK 110
+ SF S +T R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIPQT----RKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGK 128
Score = 106 (42.4 bits), Expect = 5.1e-18, Sum P(4) = 5.1e-18
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 577 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 624
PLC+ H E + + K GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCR-HGEESMLKT-SKTSANPGRKFWICKRSRGDSNNTESSCGFFQW 519
Score = 56 (24.8 bits), Expect = 5.1e-18, Sum P(4) = 5.1e-18
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHIL 261
R + YT W NYG+RID IL
Sbjct: 305 RLKMYTVWNMLKNLRPSNYGSRIDFIL 331
Score = 53 (23.7 bits), Expect = 5.1e-18, Sum P(4) = 5.1e-18
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 315 GSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKS 369
GSDH PVY L + P Q P +RY +R ++ + K++ K+
Sbjct: 351 GSDHCPVYSDLDILDDRIEPGTTQVPIPKFEARYKYNLRN--HNVLEMFAKKDTNKESNK 408
Query: 370 CKF 372
K+
Sbjct: 409 QKY 411
Score = 43 (20.2 bits), Expect = 5.2e-17, Sum P(4) = 5.2e-17
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 442 TQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDD 485
T SN + V + K S + SL SFF K N DD
Sbjct: 402 TNKESNK-QKYCVSKVMNTKKNSNIKNKSLDSFFQK-VNGEKDD 443
>TAIR|locus:2060540 [details] [associations]
symbol:ARP "apurinic endonuclease-redox protein"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0042644
"chloroplast nucleoid" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0008284 "positive
regulation of cell proliferation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0016571 "histone methylation" evidence=RCA]
[GO:0016579 "protein deubiquitination" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;TAS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] [GO:0051276 "chromosome organization" evidence=RCA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] InterPro:IPR003034 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 Pfam:PF02037 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS50800 PROSITE:PS51435
SMART:SM00513 Pfam:PF03372 GO:GO:0005634 GO:GO:0045893
EMBL:CP002685 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
Gene3D:1.10.720.30 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AC004625 EMBL:X76912 IPI:IPI00529731
PIR:T02441 RefSeq:NP_181677.1 UniGene:At.25567
ProteinModelPortal:P45951 SMR:P45951 STRING:P45951 PaxDb:P45951
PRIDE:P45951 EnsemblPlants:AT2G41460.1 GeneID:818744
KEGG:ath:AT2G41460 TAIR:At2g41460 InParanoid:P45951 KO:K01142
OMA:IFNPAGN PhylomeDB:P45951 ProtClustDB:CLSN2683775
Genevestigator:P45951 GermOnline:AT2G41460 GO:GO:0042644
Uniprot:P45951
Length = 536
Score = 137 (53.3 bits), Expect = 6.6e-14, Sum P(3) = 6.6e-14
Identities = 38/92 (41%), Positives = 57/92 (61%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRR---QELKSDLVMADGY 55
+K++T+NVNGLR + F +L+ L + DI+C QETKL+ +E+K L+ DGY
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQ-LAQRENFDILCLQETKLQVKDVEEIKKTLI--DGY 332
Query: 56 E-SFFSCTRTSDKGRTGYSGVATFCRVKSPFS 86
+ SF+SC+ + + GYSG A R+K P S
Sbjct: 333 DHSFWSCSVS----KLGYSGTAIISRIK-PLS 359
Score = 129 (50.5 bits), Expect = 6.6e-14, Sum P(3) = 6.6e-14
Identities = 43/150 (28%), Positives = 67/150 (44%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 186
D+EGR V + F L N Y P + + R+ ++++ + L + + + + G
Sbjct: 370 DTEGRIVTAEFDSFYLINTYVPNS-GDGLKRLSYRIEEWDRTLSNHIKELEKSKPVVLTG 428
Query: 187 DLNIAPAAIDRCD-AGPDFAKN---EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 242
DLN A ID + AG + E R F + L++ G F D FR +HP YT W
Sbjct: 429 DLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKG--FVDTFRKQHPGV-VGYTYW 485
Query: 243 PSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
G + N G R+D+ L + HD
Sbjct: 486 GYRHGGRKTNKGWRLDYFLVSQSIAANVHD 515
Score = 38 (18.4 bits), Expect = 6.6e-14, Sum P(3) = 6.6e-14
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 313 LEGSDHAPVYMCL 325
+ GSDH P+ + L
Sbjct: 522 INGSDHCPIGLIL 534
>GENEDB_PFALCIPARUM|PF14_0285 [details] [associations]
symbol:PF14_0285 "exodeoxyribonuclease III,
putative" species:5833 "Plasmodium falciparum" [GO:0004536
"deoxyribonuclease activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] Pfam:PF03372 EMBL:AE014187
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004536 HSSP:P27695
RefSeq:XP_001348459.1 ProteinModelPortal:Q8ILF8
EnsemblProtists:PF14_0285:mRNA GeneID:811867 KEGG:pfa:PF14_0285
EuPathDB:PlasmoDB:PF3D7_1430600 HOGENOM:HOG000281251
ProtClustDB:CLSZ2501049 Uniprot:Q8ILF8
Length = 876
Score = 120 (47.3 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 3 IVTYNVNGLRQRVSQF----GSLRKLLDSFDADIICFQETKLRRQELKSD--LVMADG-- 54
+ ++NVNG ++ L + L D DI+C QETK +++D L+ AD
Sbjct: 6 LASWNVNGWKKSCEIIKRNDDDLVQFLKKLDIDILCLQETKTNESVIENDCNLLEADSNM 65
Query: 55 YESFFSCTRTS--DKGRTGYSGVATFCR 80
YES+++C + DK GYSG+AT+ +
Sbjct: 66 YESYWTCCKKKKGDKTHKGYSGLATYVK 93
Score = 117 (46.2 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ-KRWEFLLCQGRRIFVVG 186
+EGR +IT H HFI+ N+Y P + + R+ +K++FFH ++ K + + G I ++G
Sbjct: 176 NEGRILITMHKHFIIVNIYAPYS-GHNYERLYYKVRFFHAVRAKIIQLRIVTGLPIILLG 234
Query: 187 DLNIA 191
D NI+
Sbjct: 235 DFNIS 239
Score = 73 (30.8 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 479 SNVS---HDDNNSITDTSLNVNNSVTDTSLSQEEVPESH---HHSNK 519
+NVS HD S TD+++NV+N+ D LS + H HH+NK
Sbjct: 354 NNVSDDFHDVFKSPTDSNINVSNNKNDHPLSSTNKDDHHGNNHHNNK 400
Score = 68 (29.0 bits), Expect = 4.9e-13, Sum P(4) = 4.9e-13
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 223 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
+ D F HP +TCW + N G+RID+I
Sbjct: 607 NMIDTFSFFHPNVNGKFTCWDTYRQCRVHNEGSRIDYI 644
Score = 41 (19.5 bits), Expect = 4.9e-13, Sum P(4) = 4.9e-13
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 458 RKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHS 517
+K KK+ L + SF + ++ + L N+++ DTS ++ E
Sbjct: 678 QKLKKKNSLNYHDMNSFQTNQYYANYFNKIKTKQKYLLSNDNINDTSRKKKNKQEKDEEQ 737
Query: 518 NKIPVTD 524
++ + D
Sbjct: 738 DEHKLED 744
>UNIPROTKB|Q8ILF8 [details] [associations]
symbol:PF14_0285 "Exodeoxyribonuclease III, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004536
"deoxyribonuclease activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] Pfam:PF03372 EMBL:AE014187
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004536 HSSP:P27695
RefSeq:XP_001348459.1 ProteinModelPortal:Q8ILF8
EnsemblProtists:PF14_0285:mRNA GeneID:811867 KEGG:pfa:PF14_0285
EuPathDB:PlasmoDB:PF3D7_1430600 HOGENOM:HOG000281251
ProtClustDB:CLSZ2501049 Uniprot:Q8ILF8
Length = 876
Score = 120 (47.3 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 3 IVTYNVNGLRQRVSQF----GSLRKLLDSFDADIICFQETKLRRQELKSD--LVMADG-- 54
+ ++NVNG ++ L + L D DI+C QETK +++D L+ AD
Sbjct: 6 LASWNVNGWKKSCEIIKRNDDDLVQFLKKLDIDILCLQETKTNESVIENDCNLLEADSNM 65
Query: 55 YESFFSCTRTS--DKGRTGYSGVATFCR 80
YES+++C + DK GYSG+AT+ +
Sbjct: 66 YESYWTCCKKKKGDKTHKGYSGLATYVK 93
Score = 117 (46.2 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ-KRWEFLLCQGRRIFVVG 186
+EGR +IT H HFI+ N+Y P + + R+ +K++FFH ++ K + + G I ++G
Sbjct: 176 NEGRILITMHKHFIIVNIYAPYS-GHNYERLYYKVRFFHAVRAKIIQLRIVTGLPIILLG 234
Query: 187 DLNIA 191
D NI+
Sbjct: 235 DFNIS 239
Score = 73 (30.8 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 479 SNVS---HDDNNSITDTSLNVNNSVTDTSLSQEEVPESH---HHSNK 519
+NVS HD S TD+++NV+N+ D LS + H HH+NK
Sbjct: 354 NNVSDDFHDVFKSPTDSNINVSNNKNDHPLSSTNKDDHHGNNHHNNK 400
Score = 68 (29.0 bits), Expect = 4.9e-13, Sum P(4) = 4.9e-13
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 223 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
+ D F HP +TCW + N G+RID+I
Sbjct: 607 NMIDTFSFFHPNVNGKFTCWDTYRQCRVHNEGSRIDYI 644
Score = 41 (19.5 bits), Expect = 4.9e-13, Sum P(4) = 4.9e-13
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 458 RKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHS 517
+K KK+ L + SF + ++ + L N+++ DTS ++ E
Sbjct: 678 QKLKKKNSLNYHDMNSFQTNQYYANYFNKIKTKQKYLLSNDNINDTSRKKKNKQEKDEEQ 737
Query: 518 NKIPVTD 524
++ + D
Sbjct: 738 DEHKLED 744
>TIGR_CMR|NSE_0415 [details] [associations]
symbol:NSE_0415 "exodeoxyribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020848 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
KO:K01142 EMBL:CP000237 GenomeReviews:CP000237_GR
HOGENOM:HOG000034587 GO:GO:0008853 RefSeq:YP_506301.1
ProteinModelPortal:Q2GDZ5 STRING:Q2GDZ5 GeneID:3931772
KEGG:nse:NSE_0415 PATRIC:22680889 OMA:EKAFSWW
ProtClustDB:CLSK2528138 BioCyc:NSEN222891:GHFU-437-MONOMER
Uniprot:Q2GDZ5
Length = 265
Score = 160 (61.4 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 52/149 (34%), Positives = 72/149 (48%)
Query: 121 DELLKIDSEGRC---VITDHGHFI-LFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 176
DE+ +D E R VI+ I L ++Y P A + + R ++K+QF L +R L
Sbjct: 84 DEIY-MDGEARYIEGVISFFDKCIRLISIYIPNAQAAGSPRFEYKMQFHDALARRIHGYL 142
Query: 177 CQGRRIFVVG-DLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPE 234
I ++G D+N AP ID D F I RS L E FD FR K+P
Sbjct: 143 LNNNDIMLLGGDMNAAPEDIDVYDPVKLDGCTGFHIEERSKLRELLNLGLFDTFRMKYPT 202
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCA 263
++E ++ W G Q N G RIDHIL +
Sbjct: 203 KQE-FSWWDYRGGGLQRNEGMRIDHILAS 230
Score = 80 (33.2 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+ T+NVN +RQR ++ LL S + D++ QE K + + + Y
Sbjct: 7 LKVATWNVNSIRQRAE---AVSALLVSENLDVLLLQELKCQESDFPLHVFNDLSYNVILK 63
Query: 61 CTRTSDKGRTGYSGVATFCR 80
C + GY+GVA R
Sbjct: 64 CQK-------GYNGVAIASR 76
>ZFIN|ZDB-GENE-040426-2761 [details] [associations]
symbol:apex1 "APEX nuclease (multifunctional DNA
repair enzyme) 1" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0001947 "heart looping"
evidence=IMP] [GO:0060047 "heart contraction" evidence=IMP]
[GO:0010628 "positive regulation of gene expression" evidence=IMP]
[GO:0080111 "DNA demethylation" evidence=ISS] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 ZFIN:ZDB-GENE-040426-2761
GO:GO:0005783 GO:GO:0005739 GO:GO:0043066 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0006281
GO:GO:0080111 GO:GO:0003723 GO:GO:0060047 GO:GO:0090305
GO:GO:0001947 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
EMBL:EF041101 EMBL:EF041102 EMBL:EF041103 EMBL:EF041104
EMBL:BX323558 EMBL:BC055545 EMBL:BC097053 EMBL:BC164240
IPI:IPI00498781 RefSeq:NP_998586.1 UniGene:Dr.20170 PDB:2O3C
PDBsum:2O3C ProteinModelPortal:A0MTA1 SMR:A0MTA1 STRING:A0MTA1
PRIDE:A0MTA1 Ensembl:ENSDART00000067374 GeneID:406730
KEGG:dre:406730 InParanoid:Q7SXL6 EvolutionaryTrace:A0MTA1
NextBio:20818249 ArrayExpress:A0MTA1 Bgee:A0MTA1 Uniprot:A0MTA1
Length = 310
Score = 134 (52.2 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 51/178 (28%), Positives = 83/178 (46%)
Query: 97 EEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
+EG++G+ ++ + K+E D EGR + + F L Y P A S V
Sbjct: 118 KEGYSGVAMLCKTEPLNVTYGIGKEEH---DKEGRVITAEFPDFFLVTAYVPNA-SRGLV 173
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEF 209
R+ ++ + + V + + L + + + GDLN+A ID R +AG F E
Sbjct: 174 RLDYR-KTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAG--FTPEE- 229
Query: 210 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
R F + L+E+G F D FR +P++ AYT W A N G R+D+ + + L
Sbjct: 230 REGF-TQLLEAG--FTDSFRELYPDQAYAYTFWTYMMNARSKNVGWRLDYFVLSSALL 284
Score = 112 (44.5 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI ++NV+GLR V + G + D DI+C QETK + L +D+ Y +
Sbjct: 55 MKITSWNVDGLRAWVKKNGL--DWVRKEDPDILCLQETKCAEKALPADITGMPEYPHKY- 111
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSST 88
+ DK GYSGVA C+ + P + T
Sbjct: 112 WAGSEDK--EGYSGVAMLCKTE-PLNVT 136
>TIGR_CMR|CJE_0305 [details] [associations]
symbol:CJE_0305 "exodeoxyribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
RefSeq:YP_178325.1 ProteinModelPortal:Q5HWL0 STRING:Q5HWL0
GeneID:3231067 KEGG:cjr:CJE0305 PATRIC:20042312 OMA:IMKLLSW
ProtClustDB:CLSK878706 BioCyc:CJEJ195099:GJC0-310-MONOMER
Uniprot:Q5HWL0
Length = 259
Score = 149 (57.5 bits), Expect = 4.5e-13, Sum P(3) = 4.5e-13
Identities = 46/138 (33%), Positives = 65/138 (47%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 186
D EGR + + LFN+Y P +D R+ FK+QF+ + LL G I + G
Sbjct: 93 DEEGRVLEHRFKNIALFNIYFPNGQ-KDEERLNFKMQFYADFLVYLDKLLKDGFEIIICG 151
Query: 187 DLNIAPAAID----RCDAGPD-FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 241
D+N A ID + +A F E R W +L + G F D FR + E +E Y+
Sbjct: 152 DVNTAHKEIDLTHPKANANTSGFLPIE-RAWIDDLL-KLG--FIDTFREINGEIKEKYSW 207
Query: 242 WPSNTGAEQFNYGTRIDH 259
W A + N G RID+
Sbjct: 208 WSYRMKARERNVGWRIDY 225
Score = 85 (35.0 bits), Expect = 4.5e-13, Sum P(3) = 4.5e-13
Identities = 27/89 (30%), Positives = 38/89 (42%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + +L + D I FQE K + + YE F
Sbjct: 8 MKLLSWNVNGLRA-ICDKNALDWIAQE-QIDFIGFQEIKAHEDKFPKKI-----YEYPFK 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTE 89
+ R GYSGV + C S E
Sbjct: 61 HMYFNSAKRAGYSGVMSLCNFNSEVKKCE 89
Score = 39 (18.8 bits), Expect = 4.5e-13, Sum P(3) = 4.5e-13
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 315 GSDHAPV 321
GSDHAPV
Sbjct: 247 GSDHAPV 253
>TIGR_CMR|CBU_0297 [details] [associations]
symbol:CBU_0297 "exodeoxyribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
HSSP:P27695 OMA:ADVFCIQ RefSeq:NP_819340.1
ProteinModelPortal:Q83EM1 PRIDE:Q83EM1 GeneID:1208179
KEGG:cbu:CBU_0297 PATRIC:17929289 ProtClustDB:CLSK913965
BioCyc:CBUR227377:GJ7S-304-MONOMER Uniprot:Q83EM1
Length = 259
Score = 120 (47.3 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 32/99 (32%), Positives = 47/99 (47%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T N+NG+R + L ADI+C QETK + D GY ++
Sbjct: 1 MRIITLNLNGIRAAARR--GFFDWLKRQKADIVCLQETKACLEITNGDQFHPKGYHCYYH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEG 99
D ++GYSGV +CR K +T + A +EG
Sbjct: 59 -----DAEKSGYSGVGIYCREKPDRVTTRLGWEHADKEG 92
Score = 112 (44.5 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 43/174 (24%), Positives = 73/174 (41%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVG 186
D EGR + D G + ++Y P + + R + K F KR + ++ R + G
Sbjct: 89 DKEGRYIQADFGSLSVASLYMPSGTTGEH-RQKIKFDFMDRYMKRLKNIVHSKRSFIICG 147
Query: 187 DLNIAPAAID--RCDAGPDFAK--NEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 242
D NI ID + ++ E R W + + G D FR + ++ + YT W
Sbjct: 148 DWNIVHKEIDIKNFKSNQKYSGCLPEERAWLDEVFTKVG--LVDAFRVVN-QKPDQYTWW 204
Query: 243 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH--VNECDILIDYKR 294
S A + N G RID+ + K+ ++S + ++IDY+R
Sbjct: 205 SSRGRAWEKNVGWRIDYQVITSDL---KNSVKSERIYKDKRFSDHAPLIIDYER 255
>FB|FBgn0004584 [details] [associations]
symbol:Rrp1 "Recombination repair protein 1" species:7227
"Drosophila melanogaster" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=NAS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=NAS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 EMBL:AE014134
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006974
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008408 ChiTaRS:RRP1 EMBL:M62472
EMBL:AF073994 EMBL:AY118605 PIR:S28366 RefSeq:NP_476841.1
UniGene:Dm.280 ProteinModelPortal:P27864 SMR:P27864 STRING:P27864
PaxDb:P27864 PRIDE:P27864 EnsemblMetazoa:FBtr0077678 GeneID:33500
KEGG:dme:Dmel_CG3178 CTD:8568 FlyBase:FBgn0004584 InParanoid:P27864
OrthoDB:EOG4NK9B8 GenomeRNAi:33500 NextBio:783912 Bgee:P27864
GermOnline:CG3178 Uniprot:P27864
Length = 679
Score = 135 (52.6 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 46/173 (26%), Positives = 82/173 (47%)
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGRR 181
+ D GR + ++ F L NVY P + + V ++ ++++ F K+ + L +
Sbjct: 512 EFDDVGRMITAEYEKFYLINVYVPNSGRK-LVNLEPRMRWEKLFQAYVKKLDAL----KP 566
Query: 182 IFVVGDLNIAPAAIDRCDAGPDFAKNE-FRIWFRSMLVESGG-SFFDVFRSKHPERREAY 239
+ + GD+N++ ID + + KN F R + E G F D FR +P+R+ AY
Sbjct: 567 VVICGDMNVSHMPID-LENPKNNTKNAGFTQEERDKMTELLGLGFVDTFRHLYPDRKGAY 625
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQSHNFVTCHVNECDILI 290
T W A N G R+D+ L + + + +H+++S + H C I I
Sbjct: 626 TFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH---CPITI 675
Score = 110 (43.8 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV GLR + + G +L+D + DI C QETK +L ++ GY ++
Sbjct: 427 LKICSWNVAGLRAWLKKDGL--QLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYWL 484
Query: 61 CTRTSDKGRTGYSGVATFCRV 81
C G GY+GVA + ++
Sbjct: 485 CM----PG--GYAGVAIYSKI 499
>DICTYBASE|DDB_G0277701 [details] [associations]
symbol:apeA "DNA-(apurinic or apyrimidinic site)
lyase" species:44689 "Dictyostelium discoideum" [GO:0016889
"endodeoxyribonuclease activity, producing 3'-phosphomonoesters"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016829 "lyase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
dictyBase:DDB_G0277701 Pfam:PF03372 GO:GO:0005634 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 GenomeReviews:CM000151_GR GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:U31631 EMBL:AAFI02000021
PIR:S68268 RefSeq:XP_642518.1 ProteinModelPortal:P51173
STRING:P51173 EnsemblProtists:DDB0185018 GeneID:8621167
KEGG:ddi:DDB_G0277701 eggNOG:COG0708 KO:K10771 OMA:GIRACLK
ProtClustDB:CLSZ2453462 GO:GO:0016889 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 Uniprot:P51173
Length = 361
Score = 129 (50.5 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
Identities = 38/142 (26%), Positives = 66/142 (46%)
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 182
+ K D+EGR + ++ F + N Y P A + R+ ++++ + V + + L + I
Sbjct: 188 IAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPI 247
Query: 183 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAY 239
GDLN+A ID + + F I R S +E G + D +R +P + +Y
Sbjct: 248 IWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSFSNFLEKG--YVDSYRHFNPGKEGSY 305
Query: 240 TCWPSNTGAEQFNYGTRIDHIL 261
T W G N G R+D+ +
Sbjct: 306 TFWSYLGGGRSKNVGWRLDYFV 327
Score = 102 (41.0 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+++NV G + +S+ + ++ + D++C QETK+ +K D M GYE F
Sbjct: 105 MKIISWNVAGFKSVLSK--GFTEYVEKENPDVLCLQETKINPSNIKKDQ-MPKGYEYHF- 160
Query: 61 CTRTSDKGRTGYSGVAT 77
KG G +GV T
Sbjct: 161 -IEADQKGHHG-TGVLT 175
Score = 37 (18.1 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 311 TRLEGSDHAPV 321
T + GSDH P+
Sbjct: 344 TSVMGSDHCPI 354
>UNIPROTKB|F1S8H5 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0080111 "DNA demethylation" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0045739 "positive regulation of DNA
repair" evidence=IEA] [GO:0045454 "cell redox homeostasis"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0031490 "chromatin DNA binding" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0046872 GO:GO:0003684
GO:GO:0016607 GO:GO:0006281 GO:GO:0016491 GO:GO:0080111
GO:GO:0003713 GO:GO:0090305 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:CT955972
Ensembl:ENSSSCT00000002390 Uniprot:F1S8H5
Length = 317
Score = 130 (50.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 50/174 (28%), Positives = 76/174 (43%)
Query: 97 EEGFTG--LLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSED 154
+EG++G LL K+ G+ + D+ EGR ++ + F+L Y P A
Sbjct: 125 KEGYSGVGLLSRQCLKVSYGIGEEEHDQ------EGRVIVAEFDAFVLVTAYVPNA-GRG 177
Query: 155 TVRIQFKLQFFHVLQKRWEFL--LCQGRRIFVVGDLNIAPAAID-RCDAG----PDFAKN 207
VR++++ ++ +K FL L + + + GDLN+A ID R G F
Sbjct: 178 LVRLEYRQRWDEAFRK---FLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 234
Query: 208 EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
E R F +L D FR +P AYT W A N G R+D+ L
Sbjct: 235 E-RQGFGELL--QAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFL 285
Score = 91 (37.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELSGLPHQYW 119
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S SDK GYSGV R
Sbjct: 120 SAP--SDK--EGYSGVGLLSR 136
>RGD|2126 [details] [associations]
symbol:Apex1 "APEX nuclease (multifunctional DNA repair enzyme) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=ISO;ISS] [GO:0003684 "damaged DNA binding" evidence=ISO;ISS]
[GO:0003713 "transcription coactivator activity" evidence=ISO;ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISO;ISS] [GO:0004519
"endonuclease activity" evidence=ISO] [GO:0004521 "endoribonuclease
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=ISO;IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=ISO;ISS] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007568 "aging" evidence=IDA] [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA;ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISO;ISS] [GO:0010243 "response to organic
nitrogen" evidence=IEP] [GO:0014912 "negative regulation of smooth
muscle cell migration" evidence=IMP] [GO:0016491 "oxidoreductase
activity" evidence=ISO;ISS] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISO;ISS] [GO:0031490
"chromatin DNA binding" evidence=ISO;ISS] [GO:0032403 "protein
complex binding" evidence=IPI] [GO:0042493 "response to drug"
evidence=IEP] [GO:0043488 "regulation of mRNA stability"
evidence=ISO;ISS] [GO:0045454 "cell redox homeostasis"
evidence=IEA;ISO] [GO:0045739 "positive regulation of DNA repair"
evidence=ISO;ISS] [GO:0045750 "positive regulation of S phase of
mitotic cell cycle" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=ISO;ISS] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO;ISS] [GO:0051059 "NF-kappaB binding" evidence=IDA]
[GO:0055114 "oxidation-reduction process" evidence=ISO] [GO:0070301
"cellular response to hydrogen peroxide" evidence=IEP;IDA]
[GO:0071320 "cellular response to cAMP" evidence=IEP] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEP]
[GO:0071417 "cellular response to organic nitrogen" evidence=IEP]
[GO:0080111 "DNA demethylation" evidence=ISO;ISS] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 RGD:2126 GO:GO:0005783
GO:GO:0005739 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0071320
GO:GO:0070301 GO:GO:0042493 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0007568 GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0005667 GO:GO:0003713 GO:GO:0006310 GO:GO:0014912
GO:GO:0004521 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0045739 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
GO:GO:0008408 GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:L27076 EMBL:AB023065 EMBL:D44495 EMBL:AF309114 EMBL:BC078816
IPI:IPI00231964 PIR:S42397 RefSeq:NP_077062.1 UniGene:Rn.5949
ProteinModelPortal:P43138 SMR:P43138 STRING:P43138 PhosphoSite:P43138
PRIDE:P43138 Ensembl:ENSRNOT00000013176 GeneID:79116 KEGG:rno:79116
UCSC:RGD:2126 InParanoid:P43138 NextBio:614526 ArrayExpress:P43138
Genevestigator:P43138 GermOnline:ENSRNOG00000009663 GO:GO:0051059
GO:GO:0071375 GO:GO:0045750 Uniprot:P43138
Length = 317
Score = 129 (50.5 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 45/142 (31%), Positives = 62/142 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 184
D EGR ++ + FIL Y P A VR++++ ++ +K FL L + + +
Sbjct: 151 DQEGRVIVAEFESFILVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKDLASRKPLVL 206
Query: 185 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 239
GDLN+A ID R G F E R F ML D FR +P AY
Sbjct: 207 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGEML--QAVPLADSFRHLYPNTAYAY 263
Query: 240 TCWPSNTGAEQFNYGTRIDHIL 261
T W A N G R+D+ L
Sbjct: 264 TFWTYMMNARSKNVGWRLDYFL 285
Score = 90 (36.7 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 61 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLTHQYW 118
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S SDK GYSGV R
Sbjct: 119 SAP--SDK--EGYSGVGLLSR 135
>UNIPROTKB|Q9KQY7 [details] [associations]
symbol:VC1860 "Exodeoxyribonuclease III" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0008853 "exodeoxyribonuclease III
activity" evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0005622 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 EMBL:AE004261
PIR:G82148 RefSeq:NP_231494.1 ProteinModelPortal:Q9KQY7 SMR:Q9KQY7
DNASU:2613614 GeneID:2613614 KEGG:vch:VC1860 PATRIC:20082762
Uniprot:Q9KQY7
Length = 268
Score = 113 (44.8 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++N+NGLR R+ Q L+ L+D D+I QE K+ + V A GY+ +F
Sbjct: 1 MKVISFNINGLRARLHQ---LQALIDKHQPDVIGLQEIKVHDEAFPRQEVEAMGYQVYFH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEE 98
G+ + GVA C+ ++P + P EE
Sbjct: 58 -------GQKAHYGVAILCK-QTPVEVIK-GFPTDNEE 86
Score = 104 (41.7 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 39/137 (28%), Positives = 62/137 (45%)
Query: 142 LFNVYGPRADS-EDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID---- 196
+ N Y P+ D+ E + +K QF+ L R+ V+GD+NI+P +D
Sbjct: 106 ILNGYFPQGDNVEHETKFPYKRQFYRDLMTYLREHRSNSERLVVMGDINISPLDLDIGIG 165
Query: 197 ---R---CDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQ 250
R G + E R W +++L + G D FR HP+ + ++ + + +
Sbjct: 166 EANRKRWLQTGKCSFQPEEREWLQTLL-DWG--LVDTFRQLHPDVSDQFSWFDYRSRGFE 222
Query: 251 FNYGTRIDHILCAGPCL 267
N G RID IL A P L
Sbjct: 223 DNRGLRIDVIL-ATPTL 238
>TIGR_CMR|VC_1860 [details] [associations]
symbol:VC_1860 "exodeoxyribonuclease III" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0005622 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 EMBL:AE004261
PIR:G82148 RefSeq:NP_231494.1 ProteinModelPortal:Q9KQY7 SMR:Q9KQY7
DNASU:2613614 GeneID:2613614 KEGG:vch:VC1860 PATRIC:20082762
Uniprot:Q9KQY7
Length = 268
Score = 113 (44.8 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++N+NGLR R+ Q L+ L+D D+I QE K+ + V A GY+ +F
Sbjct: 1 MKVISFNINGLRARLHQ---LQALIDKHQPDVIGLQEIKVHDEAFPRQEVEAMGYQVYFH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEE 98
G+ + GVA C+ ++P + P EE
Sbjct: 58 -------GQKAHYGVAILCK-QTPVEVIK-GFPTDNEE 86
Score = 104 (41.7 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 39/137 (28%), Positives = 62/137 (45%)
Query: 142 LFNVYGPRADS-EDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID---- 196
+ N Y P+ D+ E + +K QF+ L R+ V+GD+NI+P +D
Sbjct: 106 ILNGYFPQGDNVEHETKFPYKRQFYRDLMTYLREHRSNSERLVVMGDINISPLDLDIGIG 165
Query: 197 ---R---CDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQ 250
R G + E R W +++L + G D FR HP+ + ++ + + +
Sbjct: 166 EANRKRWLQTGKCSFQPEEREWLQTLL-DWG--LVDTFRQLHPDVSDQFSWFDYRSRGFE 222
Query: 251 FNYGTRIDHILCAGPCL 267
N G RID IL A P L
Sbjct: 223 DNRGLRIDVIL-ATPTL 238
>UNIPROTKB|P23196 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9913 "Bos taurus" [GO:0008081 "phosphoric diester hydrolase
activity" evidence=ISS] [GO:0045454 "cell redox homeostasis"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=ISS] [GO:0046872 "metal
ion binding" evidence=ISS] [GO:0016491 "oxidoreductase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0003713
"transcription coactivator activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0043488 "regulation of mRNA
stability" evidence=ISS] [GO:0080111 "DNA demethylation"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISS] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739
GO:GO:0005813 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0003684 GO:GO:0016607 GO:GO:0006281
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0003713 GO:GO:0006310 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:X56685
EMBL:BC122610 IPI:IPI00715890 PIR:S26830 RefSeq:NP_788782.2
UniGene:Bt.1302 PDB:1LYR PDB:1XZR PDB:1XZS PDB:1XZT PDBsum:1LYR
PDBsum:1XZR PDBsum:1XZS PDBsum:1XZT ProteinModelPortal:P23196
SMR:P23196 STRING:P23196 PRIDE:P23196 Ensembl:ENSBTAT00000003559
GeneID:281630 KEGG:bta:281630 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 InParanoid:P23196
OrthoDB:EOG44J2JD BRENDA:4.2.99.18 NextBio:20805567 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488
Uniprot:P23196
Length = 318
Score = 128 (50.1 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 43/142 (30%), Positives = 63/142 (44%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 184
D EGR ++ ++ F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 152 DQEGRVIVAEYDAFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKGLASRKPLVL 207
Query: 185 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 239
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLTDSFRHLYPNTAYAY 264
Query: 240 TCWPSNTGAEQFNYGTRIDHIL 261
T W A N G R+D+ L
Sbjct: 265 TFWTYMMNARSKNVGWRLDYFL 286
Score = 88 (36.0 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L +L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPVELQELSGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
>UNIPROTKB|P27695 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0007568 "aging" evidence=IEA] [GO:0014912 "negative regulation
of smooth muscle cell migration" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0042493 "response to drug"
evidence=IEA] [GO:0045454 "cell redox homeostasis" evidence=IEA]
[GO:0045750 "positive regulation of S phase of mitotic cell cycle"
evidence=IEA] [GO:0051059 "NF-kappaB binding" evidence=IEA]
[GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA]
[GO:0071320 "cellular response to cAMP" evidence=IEA] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA;TAS] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA;TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0004528
"phosphodiesterase I activity" evidence=TAS] [GO:0005840 "ribosome"
evidence=TAS] [GO:0005783 "endoplasmic reticulum" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS] [GO:0003677
"DNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0043488 "regulation of mRNA
stability" evidence=IMP] [GO:0045739 "positive regulation of DNA
repair" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0031490 "chromatin DNA binding" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IDA;TAS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IDA] [GO:0080111 "DNA
demethylation" evidence=IDA] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=TAS] [GO:0004844 "uracil DNA N-glycosylase
activity" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0055114 "oxidation-reduction process" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] Reactome:REACT_216 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 EMBL:AF488551
EMBL:U79268 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0003714 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0016607
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0005840 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
BRENDA:4.2.99.18 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:X59764 EMBL:M80261 EMBL:D90373 EMBL:S43127
EMBL:M81955 EMBL:M92444 EMBL:X66133 EMBL:D13370 EMBL:BT007236
EMBL:AL355075 EMBL:BC002338 EMBL:BC004979 EMBL:BC008145
EMBL:BC019291 EMBL:M99703 IPI:IPI00215911 PIR:S23550
RefSeq:NP_001231178.1 RefSeq:NP_001632.2 RefSeq:NP_542379.1
RefSeq:NP_542380.1 UniGene:Hs.73722 PDB:1BIX PDB:1CQG PDB:1CQH
PDB:1DE8 PDB:1DE9 PDB:1DEW PDB:1E9N PDB:1HD7 PDB:2ISI PDB:2O3H
PDB:3U8U PDBsum:1BIX PDBsum:1CQG PDBsum:1CQH PDBsum:1DE8
PDBsum:1DE9 PDBsum:1DEW PDBsum:1E9N PDBsum:1HD7 PDBsum:2ISI
PDBsum:2O3H PDBsum:3U8U DisProt:DP00007 ProteinModelPortal:P27695
SMR:P27695 DIP:DIP-6130N IntAct:P27695 MINT:MINT-119189
STRING:P27695 PhosphoSite:P27695 DMDM:113984 PaxDb:P27695
PeptideAtlas:P27695 PRIDE:P27695 DNASU:328 Ensembl:ENST00000216714
Ensembl:ENST00000398030 Ensembl:ENST00000555414
Ensembl:ENST00000557344 GeneID:328 KEGG:hsa:328 UCSC:uc001vxg.3
GeneCards:GC14P020924 HGNC:HGNC:587 HPA:CAB004294 HPA:CAB047307
HPA:HPA002564 MIM:107748 neXtProt:NX_P27695 PharmGKB:PA201059
InParanoid:P27695 OMA:TAYAYTF PhylomeDB:P27695 BindingDB:P27695
ChEMBL:CHEMBL5619 ChiTaRS:APEX1 DrugBank:DB04967
EvolutionaryTrace:P27695 GenomeRNAi:328 NextBio:1347
PMAP-CutDB:P27695 ArrayExpress:P27695 Bgee:P27695 CleanEx:HS_APEX1
CleanEx:HS_HAP1 Genevestigator:P27695 GermOnline:ENSG00000100823
GO:GO:0004528 GO:GO:0004523 GO:GO:0004844 Uniprot:P27695
Length = 318
Score = 126 (49.4 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 51/175 (29%), Positives = 76/175 (43%)
Query: 97 EEGFTG--LLETSGS-KIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSE 153
+EG++G LL K+ G+ D D+ EGR ++ + F+L Y P A
Sbjct: 125 KEGYSGVGLLSRQCPLKVSYGIGDEEHDQ------EGRVIVAEFDSFVLVTAYVPNA-GR 177
Query: 154 DTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFVVGDLNIAPAAID-RCDAG----PDFAK 206
VR++++ ++ +K FL L + + + GDLN+A ID R G F
Sbjct: 178 GLVRLEYRQRWDEAFRK---FLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTP 234
Query: 207 NEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
E R F +L D FR +P AYT W A N G R+D+ L
Sbjct: 235 QE-RQGFGELL--QAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFL 286
Score = 90 (36.7 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
>MGI|MGI:88042 [details] [associations]
symbol:Apex1 "apurinic/apyrimidinic endonuclease 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=ISO]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007568 "aging" evidence=ISO] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO] [GO:0014912 "negative
regulation of smooth muscle cell migration" evidence=ISO]
[GO:0016491 "oxidoreductase activity" evidence=ISO] [GO:0016607
"nuclear speck" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=ISO] [GO:0031490 "chromatin DNA binding"
evidence=ISO] [GO:0032403 "protein complex binding" evidence=ISO]
[GO:0043488 "regulation of mRNA stability" evidence=ISO]
[GO:0045454 "cell redox homeostasis" evidence=IDA] [GO:0045739
"positive regulation of DNA repair" evidence=ISO] [GO:0045750
"positive regulation of S phase of mitotic cell cycle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0051059 "NF-kappaB binding" evidence=ISO] [GO:0055114
"oxidation-reduction process" evidence=ISO] [GO:0070301 "cellular
response to hydrogen peroxide" evidence=ISO] [GO:0080111 "DNA
demethylation" evidence=ISO] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 MGI:MGI:88042 GO:GO:0005783
GO:GO:0005739 GO:GO:0005813 GO:GO:0048471 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:D90374 EMBL:U12273 EMBL:D38077 EMBL:BC052401 IPI:IPI00224152
PIR:A39500 RefSeq:NP_033817.1 UniGene:Mm.203
ProteinModelPortal:P28352 SMR:P28352 STRING:P28352
PhosphoSite:P28352 PaxDb:P28352 PRIDE:P28352
Ensembl:ENSMUST00000049411 GeneID:11792 KEGG:mmu:11792
InParanoid:P28352 NextBio:279621 Bgee:P28352 CleanEx:MM_APEX1
Genevestigator:P28352 GermOnline:ENSMUSG00000035960 Uniprot:P28352
Length = 317
Score = 125 (49.1 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 43/142 (30%), Positives = 62/142 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 184
D EGR ++ + F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 151 DQEGRVIVAEFESFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKDLASRKPLVL 206
Query: 185 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 239
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 207 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTAYAY 263
Query: 240 TCWPSNTGAEQFNYGTRIDHIL 261
T W A N G R+D+ L
Sbjct: 264 TFWTYMMNARSKNVGWRLDYFL 285
Score = 90 (36.7 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 61 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLTHQYW 118
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S SDK GYSGV R
Sbjct: 119 SAP--SDK--EGYSGVGLLSR 135
>UNIPROTKB|J9PA46 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 OMA:TAYAYTF EMBL:AAEX03009834
RefSeq:NP_001138591.1 ProteinModelPortal:J9PA46
Ensembl:ENSCAFT00000048382 GeneID:482558 KEGG:cfa:482558
Uniprot:J9PA46
Length = 318
Score = 125 (49.1 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 43/142 (30%), Positives = 62/142 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 184
D EGR ++ + F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 152 DQEGRVIVAEFDTFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKGLASRKPLVL 207
Query: 185 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 239
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTAYAY 264
Query: 240 TCWPSNTGAEQFNYGTRIDHIL 261
T W A N G R+D+ L
Sbjct: 265 TFWTYMMNARSKNVGWRLDYFL 286
Score = 90 (36.7 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLPHQYW 119
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S SDK GYSGV R
Sbjct: 120 SAP--SDK--EGYSGVGLLSR 136
>UNIPROTKB|A1YFZ3 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9597 "Pan paniscus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 EMBL:DQ977185
RefSeq:XP_003811777.1 RefSeq:XP_003811778.1 RefSeq:XP_003811779.1
ProteinModelPortal:A1YFZ3 SMR:A1YFZ3 GeneID:100987860
KEGG:pps:100987860 Uniprot:A1YFZ3
Length = 318
Score = 125 (49.1 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 43/142 (30%), Positives = 62/142 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 184
D EGR ++ + F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKGLASRKPLVL 207
Query: 185 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 239
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAY 264
Query: 240 TCWPSNTGAEQFNYGTRIDHIL 261
T W A N G R+D+ L
Sbjct: 265 TFWTYMMNARSKNVGWRLDYFL 286
Score = 90 (36.7 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
>UNIPROTKB|A2T6Y4 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9598 "Pan troglodytes" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003684 GO:GO:0016607 GO:GO:0006281 GO:GO:0016491
GO:GO:0006351 GO:GO:0080111 GO:GO:0003723 GO:GO:0003713
GO:GO:0006310 GO:GO:0045454 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 KO:K10771
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 HOGENOM:HOG000034586
HOVERGEN:HBG050531 OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:DQ977332
RefSeq:NP_001074954.1 UniGene:Ptr.3373 ProteinModelPortal:A2T6Y4
SMR:A2T6Y4 STRING:A2T6Y4 Ensembl:ENSPTRT00000011181 GeneID:465200
KEGG:ptr:465200 InParanoid:A2T6Y4 NextBio:20843678 Uniprot:A2T6Y4
Length = 318
Score = 125 (49.1 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 43/142 (30%), Positives = 62/142 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 184
D EGR ++ + F+L Y P A VR++++ ++ +K FL L + + +
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRK---FLKGLASRKPLVL 207
Query: 185 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 239
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAY 264
Query: 240 TCWPSNTGAEQFNYGTRIDHIL 261
T W A N G R+D+ L
Sbjct: 265 TFWTYMMNARSKNVGWRLDYFL 286
Score = 90 (36.7 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
>UNIPROTKB|A2T7I6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9600 "Pongo pygmaeus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 HOVERGEN:HBG050531
OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ977483 ProteinModelPortal:A2T7I6 SMR:A2T7I6
STRING:A2T7I6 InParanoid:A2T7I6 Uniprot:A2T7I6
Length = 318
Score = 122 (48.0 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 42/142 (29%), Positives = 62/142 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 184
D EGR ++ + F+L Y P A VR++++ ++ ++ FL L + + +
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRR---FLKGLASRKPLVL 207
Query: 185 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 239
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAY 264
Query: 240 TCWPSNTGAEQFNYGTRIDHIL 261
T W A N G R+D+ L
Sbjct: 265 TFWTYMMNARSKNVGWRLDYFL 286
Score = 90 (36.7 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
>TIGR_CMR|SO_3037 [details] [associations]
symbol:SO_3037 "exodeoxyribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435 Pfam:PF03372
GO:GO:0003677 GO:GO:0006281 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 RefSeq:NP_718605.1
ProteinModelPortal:Q8ECT7 GeneID:1170722 KEGG:son:SO_3037
PATRIC:23525710 Uniprot:Q8ECT7
Length = 270
Score = 107 (42.7 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 33/89 (37%), Positives = 48/89 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++N+NGLR R+ Q L+ L+DS DII QETK+ + V A GY +
Sbjct: 1 MKIVSFNINGLRSRLHQ---LQALIDSHQPDIIGLQETKVHDEAFPLAEVEAMGYHVHYH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTE 89
+ + G S VA +V+ F++ E
Sbjct: 58 GGK-AHYGVAMLSKVAPL-KVQKGFATDE 84
Score = 101 (40.6 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 51/188 (27%), Positives = 80/188 (42%)
Query: 96 AEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITD----HGH-FILFNVYGPRA 150
A G L + + K+ +G F+ DE D++ R +I +G + N Y P+
Sbjct: 61 AHYGVAMLSKVAPLKVQKG---FATDEE---DAQRRMIIGTFAQANGRPLTVLNGYFPQG 114
Query: 151 DSED-TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID---------R-CD 199
+S D + K +F+ L I ++GD+NI+P +D R
Sbjct: 115 ESIDHPTKYPAKRKFYQDLMAHLHANHSNDEDIAIIGDINISPIDLDIGIGEVNRKRWLK 174
Query: 200 AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 259
G + E R W +++ + G D FR HP+R E Y+ + + N G RID
Sbjct: 175 TGKCSFQPEEREWLKTL--QDWG-LVDTFRQLHPDRSERYSWFDYRSKGFDDNRGLRIDV 231
Query: 260 ILCAGPCL 267
IL A P L
Sbjct: 232 IL-ATPSL 238
>CGD|CAL0001657 [details] [associations]
symbol:APN2 species:5476 "Candida albicans" [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0008311 "double-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0034614 "cellular response to reactive oxygen
species" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020848 PROSITE:PS00728
PROSITE:PS51435 CGD:CAL0001657 Pfam:PF03372 GO:GO:0003677
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
KO:K10772 EMBL:AACQ01000244 EMBL:AACQ01000240 RefSeq:XP_710720.1
RefSeq:XP_710758.1 STRING:Q59LW6 GeneID:3647640 GeneID:3647674
KEGG:cal:CaO19.1836 KEGG:cal:CaO19.9394 Uniprot:Q59LW6
Length = 451
Score = 136 (52.9 bits), Expect = 4.4e-09, Sum P(3) = 4.4e-09
Identities = 66/212 (31%), Positives = 95/212 (44%)
Query: 9 NGLRQRVSQFGSLRKLL--DSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSD 66
N L+ F +L LL D + ET L++Q S LV Y+SF S T
Sbjct: 44 NQLKNN-KDFNTLFNLLQADIITLQELKLTETSLQQQ--MSQLVHLSDYKSFISIPVTK- 99
Query: 67 KGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS-------KI-------- 111
KG +G + + + AEEG TG L +S S KI
Sbjct: 100 KGYSGVGLFIRNPKSNENKKHRKHLTVIKAEEGITGWLPSSSSSSSSSANKIPYRESANN 159
Query: 112 MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQ-FKLQFFHVLQ 169
+ G D K L +DSEGRCV + + ++F VY P A+S+ T + F+L F +L
Sbjct: 160 IGGYTDIEKLPGLHLDSEGRCVCVELADNTVIFAVYCP-ANSQCTYDGELFRLTFIKLLL 218
Query: 170 KRWEFL--LCQGRRIFVVGDLNIAPAAIDRCD 199
+R L L ++I ++GD+NIA ID +
Sbjct: 219 QRCYNLVKLYPQKKIVIMGDINIAIDMIDHAE 250
Score = 110 (43.8 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 42/123 (34%), Positives = 58/123 (47%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRK------LLDSFDADIICFQETKLRRQELK---SDL 49
++ +T+NVNG++ + L+ L + ADII QE KL L+ S L
Sbjct: 24 IRYITFNVNGVKTIFNYHPWNQLKNNKDFNTLFNLLQADIITLQELKLTETSLQQQMSQL 83
Query: 50 VMADGYESFFSCTRTSDKGRTGYSGVATFCR-VKSPFSST--EVALPVAAEEGFTGLLET 106
V Y+SF S T + GYSGV F R KS + + + AEEG TG L +
Sbjct: 84 VHLSDYKSFISIPVT----KKGYSGVGLFIRNPKSNENKKHRKHLTVIKAEEGITGWLPS 139
Query: 107 SGS 109
S S
Sbjct: 140 SSS 142
Score = 77 (32.2 bits), Expect = 4.4e-09, Sum P(3) = 4.4e-09
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
+D R R + YT W + T A Q N+G+RID IL
Sbjct: 322 YDTTRLVQGRRMKMYTVWNTLTNARQINHGSRIDLIL 358
Score = 40 (19.1 bits), Expect = 4.4e-09, Sum P(3) = 4.4e-09
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 313 LEGSDHAPVY 322
L GSDH PV+
Sbjct: 377 LMGSDHCPVF 386
>UNIPROTKB|P09030 [details] [associations]
symbol:xthA "exonuclease III" species:83333 "Escherichia
coli K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IDA] [GO:0008853
"exodeoxyribonuclease III activity" evidence=IEA;IDA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
EchoBASE:EB1066 Pfam:PF03372 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0005622
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 EMBL:X13002
EMBL:M22592 PIR:E64934 RefSeq:NP_416263.1 RefSeq:YP_490010.1
PDB:1AKO PDBsum:1AKO ProteinModelPortal:P09030 SMR:P09030
DIP:DIP-11148N IntAct:P09030 MINT:MINT-1243969 SWISS-2DPAGE:P09030
PaxDb:P09030 PRIDE:P09030 EnsemblBacteria:EBESCT00000001718
EnsemblBacteria:EBESCT00000016194 GeneID:12932910 GeneID:946254
KEGG:ecj:Y75_p1724 KEGG:eco:b1749 PATRIC:32118809 EcoGene:EG11073
HOGENOM:HOG000034587 OMA:EVNAKRW ProtClustDB:PRK11756
BioCyc:EcoCyc:EG11073-MONOMER BioCyc:ECOL316407:JW1738-MONOMER
BioCyc:MetaCyc:EG11073-MONOMER EvolutionaryTrace:P09030
Genevestigator:P09030 GO:GO:0008853 Uniprot:P09030
Length = 268
Score = 113 (44.8 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 36/137 (26%), Positives = 60/137 (43%)
Query: 138 GHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID 196
G+ + N Y P+ +S D ++ K QF+ LQ E L + + ++GD+NI+P +D
Sbjct: 101 GNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD 160
Query: 197 RCDAGPDFAKNEFRIWFRSMLVES--------GGSFFDVFRSKHPERREAYTCWPSNTGA 248
G + K R S L E D FR +P+ + ++ + +
Sbjct: 161 -IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKG 219
Query: 249 EQFNYGTRIDHILCAGP 265
N G RID +L + P
Sbjct: 220 FDDNRGLRIDLLLASQP 236
Score = 93 (37.8 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++N+NGLR R Q L +++ D+I QETK+ + V GY F+
Sbjct: 1 MKFVSFNINGLRARPHQ---LEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFS 86
G+ G+ GVA + ++P +
Sbjct: 58 -------GQKGHYGVALLTK-ETPIA 75
>UNIPROTKB|Q9Z2J2 [details] [associations]
symbol:APE "Apurinic/apyrimidinic endonuclease"
species:10029 "Cricetulus griseus" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0016491
GO:GO:0003713 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOVERGEN:HBG050531 HSSP:P27695 EMBL:AF056934 EMBL:JH001089
RefSeq:NP_001231340.1 ProteinModelPortal:Q9Z2J2 SMR:Q9Z2J2
GeneID:100689281 Uniprot:Q9Z2J2
Length = 317
Score = 119 (46.9 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 43/142 (30%), Positives = 61/142 (42%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 184
D EGR ++ + F+L Y P A VR++++ ++ K FL L + + +
Sbjct: 151 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDKAFCK---FLKDLASRKPLVL 206
Query: 185 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 239
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 207 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLTDSFRHLYPNTPYAY 263
Query: 240 TCWPSNTGAEQFNYGTRIDHIL 261
T W A N G R+D+ L
Sbjct: 264 TFWTYMMNARAKNVGWRLDYFL 285
Score = 89 (36.4 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 61 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQDLPGLTHQYW 118
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S SDK GYSGV R
Sbjct: 119 SAP--SDK--EGYSGVGLLSR 135
>UNIPROTKB|A1YES6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9595 "Gorilla gorilla gorilla" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
HOVERGEN:HBG050531 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ976454 ProteinModelPortal:A1YES6
Uniprot:A1YES6
Length = 318
Score = 122 (48.0 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 42/142 (29%), Positives = 62/142 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFV 184
D EGR ++ + F+L Y P A VR++++ ++ ++ FL L + + +
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRR---FLKGLASRKPLVL 207
Query: 185 VGDLNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 239
GDLN+A ID R G F E R F +L D FR +P AY
Sbjct: 208 CGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAY 264
Query: 240 TCWPSNTGAEQFNYGTRIDHIL 261
T W A N G R+D+ L
Sbjct: 265 TFWTYMMNARSKNVGWRLDYFL 286
Score = 84 (34.6 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE-SFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSYQYW 119
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S + GYSGV R
Sbjct: 120 SAPXXKE----GYSGVGLLSR 136
>UNIPROTKB|K7GNL1 [details] [associations]
symbol:LOC100519003 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726 Pfam:PF03372
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
GeneTree:ENSGT00530000063540 EMBL:CU856438
Ensembl:ENSSSCT00000035798 Uniprot:K7GNL1
Length = 89
Score = 137 (53.3 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + G ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRSHLQGAGYEEPSNCTARAVGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYS 73
+ +GY S+FS +R R+GYS
Sbjct: 62 IIEGYNSYFSFSRN----RSGYS 80
>TIGR_CMR|ECH_0675 [details] [associations]
symbol:ECH_0675 "exodeoxyribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006281 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
OMA:EKAFSWW RefSeq:YP_507482.1 ProteinModelPortal:Q2GGF1
STRING:Q2GGF1 GeneID:3927975 KEGG:ech:ECH_0675 PATRIC:20576802
ProtClustDB:CLSK749128 BioCyc:ECHA205920:GJNR-677-MONOMER
Uniprot:Q2GGF1
Length = 281
Score = 134 (52.2 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 48/136 (35%), Positives = 69/136 (50%)
Query: 132 CVITDHGHFI-LFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNI 190
CV+ H I + ++Y P S D+ Q+KL FF L++ LL + + + GD N+
Sbjct: 113 CVVLHHNIKIRIASIYVPNGQSIDSDAFQYKLGFFDQLREHALSLLKKEEILILGGDYNV 172
Query: 191 APAAIDRCDAGP-D----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSN 245
AP ID D D F K+E R FRS+L G F D FR + ++ ++ W
Sbjct: 173 APYPIDVYDPEVMDGKLCFHKSE-REKFRSIL-NLG--FTDSFRVLNDYEKK-FSWWNYK 227
Query: 246 TGAEQFNYGTRIDHIL 261
GA Q N G RID++L
Sbjct: 228 AGAWQQNRGLRIDNLL 243
Score = 61 (26.5 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI T+NVN +R+R+ + L++S DI QE K ++ V + GY+
Sbjct: 3 LKIATWNVNSIRKRLDHLCNW--LINSA-IDIALLQEIKCTDEQFPFFDVESLGYK---- 55
Query: 61 CTRTSDKGRTGYSGVATF 78
C K R G + + +
Sbjct: 56 CYVHGQKARNGVAIITRY 73
>TIGR_CMR|APH_0505 [details] [associations]
symbol:APH_0505 "exodeoxyribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
RefSeq:YP_505100.1 ProteinModelPortal:Q2GKK1 STRING:Q2GKK1
GeneID:3931256 KEGG:aph:APH_0505 PATRIC:20949650 OMA:DVQIGIP
ProtClustDB:CLSK747329 BioCyc:APHA212042:GHPM-529-MONOMER
Uniprot:Q2GKK1
Length = 273
Score = 113 (44.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 47/180 (26%), Positives = 75/180 (41%)
Query: 92 LPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRAD 151
LPV ++ L E K +E +S +E I+ C T + + +VY P
Sbjct: 72 LPVVEVVSYSVLDE---GKELESAGSYSSEESRYIECTLEC--TGNKKIRVVSVYVPNGQ 126
Query: 152 SEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI 211
++ +KL+F L+ R ++ + GD N+AP ID D + F I
Sbjct: 127 EVESETFFYKLKFLEHLKDRLLNIMKTEDFLIAGGDFNVAPEEIDVHDPKALDGRLCFHI 186
Query: 212 WFRSMLVES-GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
R+ E D+FR+ R+ ++ W G Q N G RID +L + P + K
Sbjct: 187 LERAKFREILNNGIVDIFRTFVGIDRKEFSWWNYREGGWQNNRGLRIDALL-SSPQIADK 245
Score = 70 (29.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 29/109 (26%), Positives = 49/109 (44%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++++T+NVN +R+R+ S+ L D+ QE K ++ + A GY+
Sbjct: 2 IRVITWNVNSIRKRIEHLCSV---LSEHSIDVAMLQEIKCTNEQFPFVELEALGYK---- 54
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS 109
C K R G + ++ K P EV +EG LE++GS
Sbjct: 55 CYVHGQKSRNGVAIIS-----KLPV--VEVVSYSVLDEGKE--LESAGS 94
>TIGR_CMR|SPO_2509 [details] [associations]
symbol:SPO_2509 "exodeoxyribonuclease III" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006281 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
RefSeq:YP_167724.1 ProteinModelPortal:Q5LQI1 GeneID:3194499
KEGG:sil:SPO2509 PATRIC:23378419 OMA:KYPYKLA ProtClustDB:CLSK933885
Uniprot:Q5LQI1
Length = 268
Score = 96 (38.9 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 36/109 (33%), Positives = 51/109 (46%)
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID--RCDAGPDFA--KNEFRIW 212
+ +KL++ LQ R L+ + GD NI P A D R +A + A + E R
Sbjct: 128 KYDYKLRWMERLQARATELMAAEEPALMAGDYNIIPQAEDAKRPEAWREDALFRPESRAA 187
Query: 213 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
FR +L G F + FR++ + Y+ W GA N G RIDH L
Sbjct: 188 FRRIL-NLG--FTEAFRAR-VQGPGHYSFWDYQAGAWNRNDGIRIDHFL 232
Score = 86 (35.3 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 26/93 (27%), Positives = 40/93 (43%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI T+N+NG++ R +L LDS D+ QE K + ++ GY
Sbjct: 1 MKIATFNINGIKARAE---ALPAWLDSAQPDVALLQEIKSVDESFPREMFEERGYN---- 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALP 93
G+ G++GVA ++ P LP
Sbjct: 54 ---VETHGQKGFNGVAILSKL--PLEDVSRGLP 81
>TIGR_CMR|GSU_1539 [details] [associations]
symbol:GSU_1539 "exodeoxyribonuclease III" species:243231
"Geobacter sulfurreducens PCA" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 OMA:EVNAKRW
ProtClustDB:PRK11756 RefSeq:NP_952590.1 HSSP:P09030
ProteinModelPortal:Q74CY2 SMR:Q74CY2 GeneID:2687378
KEGG:gsu:GSU1539 PATRIC:22025925
BioCyc:GSUL243231:GH27-1521-MONOMER Uniprot:Q74CY2
Length = 271
Score = 99 (39.9 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR R+ Q L +L+ + DII QETK++ + V A GY +
Sbjct: 1 MKLVSFNVNGLRSRLHQ---LEELVRTHRPDIIGLQETKVQDADFPLAAVQALGYHVIYH 57
Query: 61 CTRT 64
+T
Sbjct: 58 GQKT 61
Score = 82 (33.9 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 38/135 (28%), Positives = 57/135 (42%)
Query: 142 LFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 200
+ N Y P+ +S D V+ K +F+ + + + V+GD NIAP D
Sbjct: 106 VINGYFPQGESRDHPVKFPAKERFYADVLAYLKSSCDPDAPLAVMGDFNIAPVDPD-IGI 164
Query: 201 GPDFAKNEFRIWFRSMLVESGGSF--------FDVFRSKHPERREAYTCWPSNT-GAE-Q 250
G D AK R S L E F D +R +P+ + ++ + + G E +
Sbjct: 165 GADNAKRWLRTGKTSFLPEERAWFAALRDWGLHDSYRELYPDIDDRFSWFDYRSRGFESE 224
Query: 251 FNYGTRIDHILCAGP 265
G RIDHIL P
Sbjct: 225 PKRGLRIDHILLTRP 239
>UNIPROTKB|G3V3M6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0005813 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0045454 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V3M6 SMR:G3V3M6 Ensembl:ENST00000553681
ArrayExpress:G3V3M6 Bgee:G3V3M6 Uniprot:G3V3M6
Length = 263
Score = 90 (36.7 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
Score = 88 (36.0 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 30/105 (28%), Positives = 51/105 (48%)
Query: 97 EEGFTG--LLETSGS-KIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSE 153
+EG++G LL K+ G+ D D+ EGR ++ + F+L Y P A
Sbjct: 125 KEGYSGVGLLSRQCPLKVSYGIGDEEHDQ------EGRVIVAEFDSFVLVTAYVPNA-GR 177
Query: 154 DTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFVVGDLNIAPAAID 196
VR++++ ++ +K FL L + + + GDLN+A ID
Sbjct: 178 GLVRLEYRQRWDEAFRK---FLKGLASRKPLVLCGDLNVAHEEID 219
>TIGR_CMR|BA_3868 [details] [associations]
symbol:BA_3868 "exodeoxyribonuclease III" species:198094
"Bacillus anthracis str. Ames" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142
GO:GO:0008853 HSSP:P27695 RefSeq:NP_846117.1 RefSeq:YP_020508.1
RefSeq:YP_029837.1 ProteinModelPortal:Q81WU8 DNASU:1087681
EnsemblBacteria:EBBACT00000011002 EnsemblBacteria:EBBACT00000017516
EnsemblBacteria:EBBACT00000022149 GeneID:1087681 GeneID:2815201
GeneID:2853014 KEGG:ban:BA_3868 KEGG:bar:GBAA_3868 KEGG:bat:BAS3584
OMA:ADVFCIQ ProtClustDB:CLSK917177
BioCyc:BANT260799:GJAJ-3643-MONOMER
BioCyc:BANT261594:GJ7F-3759-MONOMER Uniprot:Q81WU8
Length = 252
Score = 132 (51.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 54/206 (26%), Positives = 87/206 (42%)
Query: 73 SGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKI------ 126
S FC + ++ L V EG+ + K G FSK E L +
Sbjct: 27 SNADIFCLQEIKLQEGQIDLNV---EGYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGLGI 83
Query: 127 ---DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQGR 180
D EGR + + F + +Y P + R+++++++ F KR L + +
Sbjct: 84 EEHDQEGRVITLEFEDFYIITLYTPNS-KRGLERLEYRMKWEDDFRAYIKR----LDEKK 138
Query: 181 RIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ GDLN+A ID + P F+ E R F +L E G F D +R +P++
Sbjct: 139 SVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCIL-EEG--FIDTYRYLYPDQ 194
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHIL 261
AY+ W GA N G R+D+ +
Sbjct: 195 EGAYSWWSYRMGARAKNIGWRLDYFV 220
Score = 125 (49.1 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR +++ G L L +S +ADI C QE KL QE + DL + +GY ++++
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKL--QEGQIDLNV-EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSST 88
+ GYSG A F + K P S T
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT 78
Score = 37 (18.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 309 MSTRLEGSDHAPV 321
+++ + GSDH PV
Sbjct: 234 INSEVMGSDHCPV 246
>WB|WBGene00001372 [details] [associations]
symbol:exo-3 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=IMP;IDA]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0006284 GO:GO:0004527
GO:GO:0090305 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 OMA:GIRACLK PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008081 EMBL:Z81108
EMBL:AF034258 PIR:T24066 RefSeq:NP_001021584.1 UniGene:Cel.19620
HSSP:P27695 ProteinModelPortal:G5EBR7 SMR:G5EBR7 IntAct:G5EBR7
PRIDE:G5EBR7 EnsemblMetazoa:R09B3.1a.1 EnsemblMetazoa:R09B3.1a.2
GeneID:173069 KEGG:cel:CELE_R09B3.1 CTD:173069 WormBase:R09B3.1a
NextBio:878149 Uniprot:G5EBR7
Length = 288
Score = 125 (49.1 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 50/209 (23%), Positives = 101/209 (48%)
Query: 81 VKSPFSSTEVALPVAAEE--GFTG---LLETSGSKIMEGLEDFSKDELLKIDSEGRCVIT 135
++ F + L V+ E+ G+ G L + + K+ +G+ D + D+ GR +I
Sbjct: 78 MEETFKNYTKTLVVSTEKNGGYAGVGLLSKCAPMKVHKGIGD------PEFDTAGRLIIA 131
Query: 136 DHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAI 195
+ F Y P + ++ V ++ + ++ +L ++ + + + + + GDLN+A I
Sbjct: 132 EFSKFYFIGAYVPNSGAK-LVNLEKRGRWEKLLTEKMKEM-DEKKPVIYGGDLNVAHNEI 189
Query: 196 DRCDAGPDFAKNE---F----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGA 248
D P+ +N+ F R WF ML E G F D FR+ HP+ ++ Y+ W +
Sbjct: 190 DL--KNPESNRNKTAGFTDQERGWFSEML-ELG--FTDTFRAMHPDEKK-YSFWSYLANS 243
Query: 249 EQFNYGTRIDHILCAGPCLHQ--KHDLQS 275
Q + G R+D+ + + +++ + D+ S
Sbjct: 244 RQKDVGWRLDYYVVSNRIMNKVKRSDIMS 272
Score = 43 (20.2 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 315 GSDHAPVYM 323
GSDHAPV M
Sbjct: 276 GSDHAPVVM 284
>UNIPROTKB|E1C286 [details] [associations]
symbol:E1C286 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0019104 "DNA N-glycosylase activity" evidence=IEA]
InterPro:IPR000214 InterPro:IPR001876 InterPro:IPR010666
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
InterPro:IPR015887 Pfam:PF01149 Pfam:PF06831 Pfam:PF06839
PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199 PROSITE:PS51066
PROSITE:PS51068 SMART:SM00547 SMART:SM00898 GO:GO:0005634
GO:GO:0006284 GO:GO:0003684 GO:GO:0008270 GO:GO:0003690
GO:GO:0003697 GO:GO:0003906 GO:GO:0006289 GO:GO:0000405
GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946 OMA:TKDLICF
GeneTree:ENSGT00510000048146 EMBL:AADN02008928 IPI:IPI00592615
Ensembl:ENSGALT00000017443 ArrayExpress:E1C286 Uniprot:E1C286
Length = 600
Score = 110 (43.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 570 QLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 628
Q + S P C H + CV ++V K GP GR FFVC P E CG+F+WA +K
Sbjct: 542 QWADLSFPFCH-HGKRCVMKMVLKLGPNNGRNFFVC-----PLQK-EKQCGFFQWAENK 593
Score = 64 (27.6 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 473 SFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHEL 532
+F H +SNV H S+ + VT + S + P S H K T + SVH+
Sbjct: 422 NFSHNQSNVYH----SVISIDKYCSTDVTSAASSSCQEPLSFKHIKKKQKTHHVPSVHQY 477
Query: 533 HG 534
+G
Sbjct: 478 NG 479
Score = 42 (19.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 14/76 (18%), Positives = 35/76 (46%)
Query: 379 ESNSTGDTEDCSENVDRSLN--NY-CDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 435
E +S+ TE+ ++ D ++N Y C+ + + + G T + + + A +
Sbjct: 344 EVSSSLKTENVEDSADFNINLIKYPCNEFRKPSTEIKINRKAAFGNTTLVLTDLGNKAVL 403
Query: 436 ASHSTITQGSSNHISP 451
++ G S++++P
Sbjct: 404 KGDIQVSDGCSDYVAP 419
>UNIPROTKB|F1N383 [details] [associations]
symbol:NEIL3 "Endonuclease 8-like 3" species:9913 "Bos
taurus" [GO:0019104 "DNA N-glycosylase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0000405 "bubble DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR000214 InterPro:IPR001876
InterPro:IPR010666 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF00641 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 GO:GO:0005634
GO:GO:0006284 GO:GO:0003684 GO:GO:0008270 GO:GO:0003690
GO:GO:0003697 GO:GO:0003906 GO:GO:0006289 GO:GO:0000405
GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946 IPI:IPI00706576
UniGene:Bt.37835 OMA:TKDLICF GeneTree:ENSGT00510000048146
EMBL:DAAA02060028 Ensembl:ENSBTAT00000007661 Uniprot:F1N383
Length = 606
Score = 125 (49.1 bits), Expect = 0.00025, P = 0.00025
Identities = 49/183 (26%), Positives = 76/183 (41%)
Query: 452 FHVDRARKKA-KKSQLGQ--LSLKSFFHKRSNVSHDDNNS-ITD---TSLNVNNSVTDT- 503
F +A+ K +K+ G L L F +K S + ++++S I D S N +DT
Sbjct: 372 FGKSKAKVKINRKTAFGTTTLVLTDFSNKHSALEREESHSHIPDGEFPSPPPNVCGSDTL 431
Query: 504 SLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL 563
+ S+E S+K+ ++ CS ++L + + +N L
Sbjct: 432 NTSKERTNCRSQPSDKVNISPVVCSQYKLFSPAHKKLKTTHYSSPDLKSCNPGFSNSELQ 491
Query: 564 EWRRIQQ-LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 622
L+ P C H PC RVV+K G GR F+ C A EA CG+F
Sbjct: 492 SSMTDGPCLLNAGSPRCSKHGRPCALRVVRKSGENKGRHFYACPLAR------EAQCGFF 545
Query: 623 KWA 625
+WA
Sbjct: 546 EWA 548
>UNIPROTKB|Q3MHN7 [details] [associations]
symbol:NEIL3 "Endonuclease 8-like 3" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0000405
"bubble DNA binding" evidence=ISS] [GO:0006284 "base-excision
repair" evidence=ISS] [GO:0019104 "DNA N-glycosylase activity"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR000214 InterPro:IPR001876
InterPro:IPR010666 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF00641 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 GO:GO:0005634
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0003690 GO:GO:0003697 GO:GO:0003906 GO:GO:0006289
GO:GO:0000405 GO:GO:0019104 eggNOG:COG0266 SUPFAM:SSF81624
SUPFAM:SSF46946 EMBL:BC105168 IPI:IPI00706576 RefSeq:NP_001029662.1
UniGene:Bt.37835 ProteinModelPortal:Q3MHN7 STRING:Q3MHN7
PRIDE:Q3MHN7 GeneID:515343 KEGG:bta:515343 CTD:55247
HOGENOM:HOG000113754 HOVERGEN:HBG052594 InParanoid:Q3MHN7 KO:K10569
OrthoDB:EOG48GW30 NextBio:20871781 Uniprot:Q3MHN7
Length = 606
Score = 125 (49.1 bits), Expect = 0.00025, P = 0.00025
Identities = 49/183 (26%), Positives = 76/183 (41%)
Query: 452 FHVDRARKKA-KKSQLGQ--LSLKSFFHKRSNVSHDDNNS-ITD---TSLNVNNSVTDT- 503
F +A+ K +K+ G L L F +K S + ++++S I D S N +DT
Sbjct: 372 FGKSKAKVKINRKTAFGTTTLVLTDFSNKHSALEREESHSHIPDGEFPSPPPNVCGSDTL 431
Query: 504 SLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL 563
+ S+E S+K+ ++ CS ++L + + +N L
Sbjct: 432 NTSKERTNCRSQPSDKVNISPVVCSQYKLFSPAHKKLKTTHYSSPDLKSCNPGFSNSELQ 491
Query: 564 EWRRIQQ-LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 622
L+ P C H PC RVV+K G GR F+ C A EA CG+F
Sbjct: 492 SSMTDGPCLLNAGSPRCSKHGRPCALRVVRKSGENKGRHFYACPLAR------EAQCGFF 545
Query: 623 KWA 625
+WA
Sbjct: 546 EWA 548
>RGD|1310562 [details] [associations]
symbol:Neil3 "nei endonuclease VIII-like 3 (E. coli)"
species:10116 "Rattus norvegicus" [GO:0000405 "bubble DNA binding"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA;ISO] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006284 "base-excision
repair" evidence=IEA;ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds"
evidence=IEA] [GO:0019104 "DNA N-glycosylase activity"
evidence=ISO] InterPro:IPR000214 InterPro:IPR001876
InterPro:IPR010666 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF00641 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 RGD:1310562
GO:GO:0005634 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0003690 GO:GO:0003697 GO:GO:0003906 GO:GO:0006289
GO:GO:0000405 GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946
OrthoDB:EOG48GW30 GeneTree:ENSGT00510000048146 IPI:IPI00358506
Ensembl:ENSRNOT00000015623 Uniprot:D3ZKJ8
Length = 607
Score = 127 (49.8 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 572 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 625
+ S P CK H PCV RVV+K G GR+F+ C+ G A CG+F+WA
Sbjct: 502 LHASRPQCKTHSRPCVLRVVRKDGENKGRQFYACSLPRG------AQCGFFEWA 549
Score = 43 (20.2 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 20/103 (19%), Positives = 42/103 (40%)
Query: 460 KAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNK 519
K + +LG+ S ++F + + I + N N ++ T Q+ +S ++
Sbjct: 261 KIRVCRLGENSRMTYFCPHCQKENPQHVQICQQTANKNAEISWTPKGQDCFTDSVARKSE 320
Query: 520 IPVTDYSCSVHEL-HGVNSSVCSHDQDEKKGKRFLDKERNNVA 561
+SC V L + +++ C + L E N++A
Sbjct: 321 ---EQWSCMVCTLINKPSATACDACLTTRPVDSVLKNEENSIA 360
>ZFIN|ZDB-GENE-041114-18 [details] [associations]
symbol:neil3 "nei endonuclease VIII-like 3 (E.
coli)" species:7955 "Danio rerio" [GO:0016799 "hydrolase activity,
hydrolyzing N-glycosyl compounds" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR000214 InterPro:IPR001876 InterPro:IPR010666
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
InterPro:IPR015887 Pfam:PF00641 Pfam:PF01149 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 SMART:SM00898
ZFIN:ZDB-GENE-041114-18 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0005622 GO:GO:0003906 GO:GO:0006289 SUPFAM:SSF81624
SUPFAM:SSF46946 GO:GO:0016799 GeneTree:ENSGT00510000048146
EMBL:CR853287 IPI:IPI00837209 Ensembl:ENSDART00000123343
ArrayExpress:F1Q570 Bgee:F1Q570 Uniprot:F1Q570
Length = 577
Score = 123 (48.4 bits), Expect = 0.00039, P = 0.00039
Identities = 44/149 (29%), Positives = 63/149 (42%)
Query: 492 TSLNVN-NSVTDTSLSQEEVPESHH----HSN---KIP---VTDYSCSVHELHGVNSSVC 540
TSL+ +S + ++SQ PE+ H N K P V+ +E + S
Sbjct: 378 TSLSAKPDSPSSPAISQAHTPETMRGLSTHGNWQRKSPSNGVSGMQFKGNEPYK-RESPT 436
Query: 541 SHDQDEKKGKRFLDK-ERNNVALLEWRRIQQLMETSIPL---CKGHKEPCVARVVKKPGP 596
H Q K+ K N+ + R QQ + S+P CK H PC RVV K G
Sbjct: 437 DHSQPNKRMKTTNGTFSGGNIKHISSRGTQQSNDASLPTTPCCKSHHRPCTQRVVTKEGE 496
Query: 597 TFGRRFFVCARAEGPASNPEANCGYFKWA 625
GR+F+ C+ E C +F+WA
Sbjct: 497 NKGRQFYTCSLPR------ETQCNFFEWA 519
>UNIPROTKB|G3V359 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V359 SMR:G3V359
Ensembl:ENST00000557592 ArrayExpress:G3V359 Bgee:G3V359
Uniprot:G3V359
Length = 172
Score = 90 (36.7 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 45 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 101
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 102 WSAPSDK--EGYSGVGLLSR 119
Score = 61 (26.5 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 97 EEGFTG--LLETSGS-KIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSE 153
+EG++G LL K+ G+ D D+ EGR ++ + F+L Y P A
Sbjct: 108 KEGYSGVGLLSRQCPLKVSYGIGDEEHDQ------EGRVIVAEFDSFVLVTAYVPNA-GR 160
Query: 154 DTVRIQFK 161
VR++++
Sbjct: 161 GLVRLEYR 168
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 632 632 0.00092 120 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 54
No. of states in DFA: 624 (66 KB)
Total size of DFA: 377 KB (2185 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 60.44u 0.20s 60.64t Elapsed: 00:00:03
Total cpu time: 60.45u 0.20s 60.65t Elapsed: 00:00:03
Start: Fri May 10 09:18:45 2013 End: Fri May 10 09:18:48 2013