Query 006757
Match_columns 632
No_of_seqs 375 out of 2176
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 14:03:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0708 XthA Exonuclease III [ 100.0 1.3E-51 2.8E-56 416.0 19.4 252 1-326 1-260 (261)
2 PRK13911 exodeoxyribonuclease 100.0 4.9E-49 1.1E-53 402.6 24.1 244 1-325 1-249 (250)
3 PRK11756 exonuclease III; Prov 100.0 2.9E-41 6.3E-46 349.0 24.3 251 1-326 1-267 (268)
4 TIGR00195 exoDNase_III exodeox 100.0 1.6E-39 3.6E-44 333.2 23.4 249 1-325 1-254 (254)
5 TIGR00633 xth exodeoxyribonucl 100.0 1E-36 2.3E-41 311.1 24.2 248 1-325 1-254 (255)
6 KOG1294 Apurinic/apyrimidinic 99.8 1.6E-20 3.5E-25 197.3 13.5 254 1-326 64-334 (335)
7 PRK05421 hypothetical protein; 99.8 2.5E-19 5.4E-24 185.2 19.9 213 1-328 44-262 (263)
8 KOG1294 Apurinic/apyrimidinic 99.7 1E-17 2.2E-22 176.3 13.6 183 122-357 5-189 (335)
9 KOG3873 Sphingomyelinase famil 99.7 3.1E-16 6.6E-21 161.8 12.6 273 1-353 9-318 (422)
10 PF03372 Exo_endo_phos: Endonu 99.6 9.1E-16 2E-20 152.2 12.3 75 4-82 1-83 (249)
11 PLN03144 Carbon catabolite rep 99.6 6.5E-15 1.4E-19 165.9 20.1 182 1-194 255-470 (606)
12 COG3568 ElsH Metal-dependent h 99.6 8.9E-15 1.9E-19 148.4 16.6 233 1-328 10-258 (259)
13 TIGR03395 sphingomy sphingomye 99.6 3.1E-14 6.8E-19 148.7 20.5 215 1-266 1-245 (283)
14 PTZ00297 pantothenate kinase; 99.6 1.1E-13 2.5E-18 169.9 23.7 261 1-328 11-315 (1452)
15 KOG2756 Predicted Mg2+-depende 99.5 9.6E-14 2.1E-18 138.4 11.5 198 2-263 101-309 (349)
16 PRK15251 cytolethal distending 99.5 2E-12 4.4E-17 132.2 18.0 151 1-194 25-199 (271)
17 PF06839 zf-GRF: GRF zinc fing 99.4 3E-13 6.5E-18 101.8 4.5 45 577-628 1-45 (45)
18 PF14529 Exo_endo_phos_2: Endo 99.3 4.1E-12 8.9E-17 114.3 10.1 99 140-267 1-99 (119)
19 COG3021 Uncharacterized protei 99.2 7.2E-11 1.6E-15 122.1 10.0 143 2-193 90-236 (309)
20 KOG2338 Transcriptional effect 99.1 1.1E-09 2.3E-14 118.7 13.2 145 18-193 151-306 (495)
21 smart00476 DNaseIc deoxyribonu 99.1 5.6E-09 1.2E-13 108.4 18.1 75 1-82 18-104 (276)
22 COG5239 CCR4 mRNA deadenylase, 98.8 4.8E-08 1E-12 102.2 12.7 81 1-81 31-131 (378)
23 smart00128 IPPc Inositol polyp 98.7 2.9E-07 6.3E-12 97.7 15.7 154 2-193 6-195 (310)
24 KOG0620 Glucose-repressible al 98.6 1E-07 2.2E-12 102.5 7.7 67 19-87 53-120 (361)
25 KOG0566 Inositol-1,4,5-triphos 97.7 0.0002 4.3E-09 83.0 10.3 50 138-191 673-726 (1080)
26 KOG1956 DNA topoisomerase III 97.4 5.1E-05 1.1E-09 84.5 1.8 40 577-625 719-758 (758)
27 COG2374 Predicted extracellula 97.1 0.0044 9.5E-08 71.1 12.8 87 159-272 652-740 (798)
28 PLN03191 Type I inositol-1,4,5 95.4 0.24 5.3E-06 56.4 13.7 18 312-329 576-593 (621)
29 KOG4399 C2HC-type Zn-finger pr 94.8 0.018 4E-07 58.1 2.6 50 574-630 11-60 (325)
30 PF01396 zf-C4_Topoisom: Topoi 83.8 1.6 3.4E-05 31.8 3.5 36 578-627 3-38 (39)
31 COG5411 Phosphatidylinositol 5 78.4 4.2 9E-05 44.8 6.0 17 313-329 312-328 (460)
32 PTZ00312 inositol-1,4,5-tripho 78.0 5.8 0.00013 41.6 6.6 56 138-193 80-142 (356)
33 PF06373 CART: Cocaine and amp 65.2 2.6 5.6E-05 34.5 0.5 44 562-623 26-69 (73)
34 PLN03191 Type I inositol-1,4,5 57.1 8.1 0.00018 44.5 2.8 35 3-39 112-149 (621)
35 PF04606 Ogr_Delta: Ogr/Delta- 48.9 17 0.00038 27.4 2.6 31 578-608 1-31 (47)
36 PF09507 CDC27: DNA polymerase 47.0 6.9 0.00015 43.1 0.3 15 464-478 416-430 (430)
37 PF05325 DUF730: Protein of un 35.2 51 0.0011 28.8 3.6 44 576-625 20-65 (122)
No 1
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-51 Score=416.00 Aligned_cols=252 Identities=37% Similarity=0.652 Sum_probs=218.6
Q ss_pred CEEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEEEe
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl~R 80 (632)
|||+||||||||+++.+ ++++|.+.+||||||||||...+.++...+...||+.++.. |.+||+|||||+|
T Consensus 1 mkI~SwNVNgiRar~~~---~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~------gqKgysGVailsr 71 (261)
T COG0708 1 MKIASWNVNGLRARLKK---LLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNH------GQKGYSGVAILSK 71 (261)
T ss_pred CeeEEEehhhHHHHHHH---HHHHHHHhCCCEEEEEecccCcccCCHhHHhhCCceEEEec------CcCCcceEEEEEc
Confidence 89999999999999986 99999999999999999999999998877778999776653 5589999999999
Q ss_pred ecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEeeceEEEEEEEcCCCCCCchHhHHH
Q 006757 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (632)
Q Consensus 81 ~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~~~~~LinVY~P~~~~~~~er~~f 160 (632)
.+ |..+..|+.+. ...|.+||+|.+.+..|.|+|+|+|++.....+++.+
T Consensus 72 ~~----------~~~v~~g~~~~--------------------~~~d~e~R~I~a~~~~~~v~~~Y~PnG~~~~~~k~~y 121 (261)
T COG0708 72 KP----------PDDVRRGFPGE--------------------EEDDEEGRVIEAEFDGFRVINLYFPNGSSIGLEKFDY 121 (261)
T ss_pred cC----------chhhhcCCCCC--------------------ccccccCcEEEEEECCEEEEEEEcCCCCCCCCcchHH
Confidence 84 45566666431 1246799999999999999999999999756789999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCC--------CCCchhHHHHHHHHHHHhcCCceEeeccccC
Q 006757 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--------PDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232 (632)
Q Consensus 161 k~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~--------~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~h 232 (632)
|++|++.|..++++++..+.++|||||||++|.++|..++. ..|.+++ |.||..++. .| |+|+||.+|
T Consensus 122 Kl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~ee-R~~~~~ll~-~G--~~D~~R~~~ 197 (261)
T COG0708 122 KLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEE-RAWFRRLLN-AG--FVDTFRLFH 197 (261)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhhhhcCCCCCCCHHH-HHHHHHHHH-cc--hhhhhHhhC
Confidence 99999999999999999999999999999999999977652 4566666 999998884 44 999999999
Q ss_pred CCCCCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCCCCCC
Q 006757 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTR 312 (632)
Q Consensus 233 P~~~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~ 312 (632)
|...+ ||||+++.++++.|.|.||||||+|+.+.. ++++|.|+.+.+.|
T Consensus 198 p~~~~-YTwW~YR~~~~~~n~G~RID~~l~S~~L~~-------------~~~~a~I~~~~rg~----------------- 246 (261)
T COG0708 198 PEPEK-YTWWDYRANAARRNRGWRIDYILVSPALAD-------------RLKDAGIDREVRGW----------------- 246 (261)
T ss_pred CCCCc-ccccccccchhhhcCceeEEEEEeCHHHHH-------------HHHhcCccHHHhcC-----------------
Confidence 99877 999999999778889999999999998654 78999999875533
Q ss_pred CCCCCccceEEEEe
Q 006757 313 LEGSDHAPVYMCLG 326 (632)
Q Consensus 313 ~~~SDH~PV~~~l~ 326 (632)
..+||||||+++|.
T Consensus 247 e~pSDHaPV~~e~~ 260 (261)
T COG0708 247 EKPSDHAPVWVELD 260 (261)
T ss_pred CCCCCcCcEEEEec
Confidence 25699999999986
No 2
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=100.00 E-value=4.9e-49 Score=402.62 Aligned_cols=244 Identities=34% Similarity=0.601 Sum_probs=206.2
Q ss_pred CEEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEEEe
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl~R 80 (632)
|||+||||||||+..++ .+.++|+.++||||||||||++.+.+. ....||..|+..+ +++||+|||||+|
T Consensus 1 mki~swNVNgir~~~~~--~~~~~l~~~~~DIiclQEtK~~~~~~~---~~~~gY~~~~~~~-----~~kgy~GVAi~~k 70 (250)
T PRK13911 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNT---FEFKGYFDFWNCA-----IKKGYSGVVTFTK 70 (250)
T ss_pred CEEEEEEeCChhHhhhh--hHHHHHHhcCCCEEEEEeecccccccc---cccCCceEEEEec-----ccCccceEEEEEc
Confidence 89999999999998864 499999999999999999999887763 3467999887532 5689999999999
Q ss_pred ecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEeeceEEEEEEEcCCCCCCchHhHHH
Q 006757 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (632)
Q Consensus 81 ~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~~~~~LinVY~P~~~~~~~er~~f 160 (632)
.+ |+.+..|+.. ...|.|||+|.++++.|+|+|||+|+++. ..+|++|
T Consensus 71 ~~----------~~~v~~~~~~---------------------~~~d~eGR~I~~~~~~~~l~nvY~Pn~~~-~~~r~~~ 118 (250)
T PRK13911 71 KE----------PLSVSYGINI---------------------EEHDKEGRVITCEFESFYLVNVYTPNSQQ-ALSRLSY 118 (250)
T ss_pred CC----------chheEEcCCC---------------------CcccccCCEEEEEECCEEEEEEEecCCCC-CCcchHH
Confidence 83 5555555420 13578999999999999999999999885 4579999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCC-----CCCCchhHHHHHHHHHHHhcCCceEeeccccCCCC
Q 006757 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235 (632)
Q Consensus 161 k~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~-----~~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~ 235 (632)
|++|+..|.+++..+ ..+.++|||||||++|.++|.+++ ..+|.+.+ |.||+.++. . +|+|+||.+||..
T Consensus 119 K~~~~~~~~~~l~~l-~~~~~~Ii~GD~Nva~~~~D~~~~~~~~~~~gf~~~e-r~~f~~~l~-~--gl~D~~R~~~p~~ 193 (250)
T PRK13911 119 RMSWEVEFKKFLKAL-ELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEE-RGKFSELLN-A--GFIDTFRYFYPNK 193 (250)
T ss_pred HHHHHHHHHHHHHhc-ccCCCEEEEccccCCCChhhccChhhcCCCCCcCHHH-HHHHHHHHh-c--CCeehhhhhCCCC
Confidence 999999999999876 567899999999999999999864 35677766 999999986 3 4999999999997
Q ss_pred CCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCCCCCCCCC
Q 006757 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 315 (632)
Q Consensus 236 ~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~~~ 315 (632)
.+.||||+++.+++..|.|.||||||+++.+.. .+.++.|... ..+
T Consensus 194 ~~~yTww~~~~~~~~~n~g~RIDyilvs~~~~~-------------~~~~~~i~~~---------------------~~~ 239 (250)
T PRK13911 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKT-------------RLKDALIYKD---------------------ILG 239 (250)
T ss_pred CCCCccCCCcCCccccCCcceEEEEEEChHHhh-------------hEEEEEECCC---------------------CCC
Confidence 678999999999999999999999999998643 6777777542 368
Q ss_pred CCccceEEEE
Q 006757 316 SDHAPVYMCL 325 (632)
Q Consensus 316 SDH~PV~~~l 325 (632)
||||||+++|
T Consensus 240 SDH~Pv~~~~ 249 (250)
T PRK13911 240 SDHCPVGLEL 249 (250)
T ss_pred CCcccEEEEe
Confidence 9999999987
No 3
>PRK11756 exonuclease III; Provisional
Probab=100.00 E-value=2.9e-41 Score=348.97 Aligned_cols=251 Identities=29% Similarity=0.503 Sum_probs=194.8
Q ss_pred CEEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEEEe
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl~R 80 (632)
|||+||||||++.... .+.++|++.+|||||||||+...+.+....+...||..++. +..+|.|||||+|
T Consensus 1 mri~T~Nv~g~~~~~~---~i~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~gy~~~~~-------~~~~~~GvailSr 70 (268)
T PRK11756 1 MKFVSFNINGLRARPH---QLEAIIEKHQPDVIGLQETKVHDEMFPLEEVEALGYHVFYH-------GQKGHYGVALLSK 70 (268)
T ss_pred CEEEEEEcCCHHHHHH---HHHHHHHhcCCCEEEEEecccccccCCHHHHHhcCCEEEEe-------CCCCCCEEEEEEC
Confidence 8999999999987655 39999999999999999999876655444556689987764 2357789999999
Q ss_pred ecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEee----ceEEEEEEEcCCCCCC-ch
Q 006757 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----GHFILFNVYGPRADSE-DT 155 (632)
Q Consensus 81 ~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~----~~~~LinVY~P~~~~~-~~ 155 (632)
.+ ++....++.+ ...+.+||+|.+.+ +.|.|+|+|+|++... ..
T Consensus 71 ~p----------~~~~~~~~~~---------------------~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~ 119 (268)
T PRK11756 71 QT----------PIAVRKGFPT---------------------DDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHP 119 (268)
T ss_pred CC----------hHHeEECCCC---------------------ccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcc
Confidence 84 2233332210 01245789988764 3599999999997642 23
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCC-----------CCCCchhHHHHHHHHHHHhcCCce
Q 006757 156 VRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----------GPDFAKNEFRIWFRSMLVESGGSF 224 (632)
Q Consensus 156 er~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~-----------~~~~~~~~~r~~l~~lL~~~g~~L 224 (632)
.+..+|++|+..|..++.+++..+.|+||+||||+.+..+|.+.+ ..+|.+.+ |.|++.++. . +|
T Consensus 120 ~~~~~r~~~~~~l~~~l~~~~~~~~pvIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~e-r~~~~~l~~-~--~l 195 (268)
T PRK11756 120 TKFPAKRQFYQDLQNYLETELSPDNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEE-REWLDRLMD-W--GL 195 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCEEEEeecccCCChhhcCCcccChHHhcccCCccCCHHH-HHHHHHHHh-C--Cc
Confidence 566788999999999998877778999999999999999988632 23455555 889987763 4 49
Q ss_pred EeeccccCCCCCCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcc
Q 006757 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYR 304 (632)
Q Consensus 225 ~D~~R~~hP~~~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~ 304 (632)
+|+||.+||...+.||||+++.++++.|.|.||||||++..+.. +|.+|.|..+.+.
T Consensus 196 ~D~~R~~~p~~~~~~T~~~~~~~~~~~~~g~RIDyi~~s~~~~~-------------~v~~~~i~~~~~~---------- 252 (268)
T PRK11756 196 VDTFRQLNPDVNDRFSWFDYRSKGFDDNRGLRIDLILATQPLAE-------------RCVETGIDYDIRG---------- 252 (268)
T ss_pred EeehhhhCCCCCCcccCcCCcccccccCCceEEEEEEeCHHHHh-------------hheEeEEeHHHhC----------
Confidence 99999999985556999999998888899999999999987643 6889999875321
Q ss_pred ccCCCCCCCCCCCccceEEEEe
Q 006757 305 WKGGMSTRLEGSDHAPVYMCLG 326 (632)
Q Consensus 305 W~~~~~~~~~~SDH~PV~~~l~ 326 (632)
...+||||||+++|.
T Consensus 253 -------~~~~SDH~PV~~~~~ 267 (268)
T PRK11756 253 -------MEKPSDHAPIWATFK 267 (268)
T ss_pred -------CCCCCCcccEEEEEe
Confidence 135799999999985
No 4
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=100.00 E-value=1.6e-39 Score=333.20 Aligned_cols=249 Identities=35% Similarity=0.636 Sum_probs=198.1
Q ss_pred CEEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEEEe
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl~R 80 (632)
|||+||||+|++...++ +.++|+.++|||||||||+.....+...++...||..+++.. +|+.||||++|
T Consensus 1 mri~t~Ni~g~~~~~~~---~~~~l~~~~~DIi~LQE~~~~~~~~~~~~~~~~g~~~~~~~~-------~g~~Gvailsr 70 (254)
T TIGR00195 1 MKIISWNVNGLRARLHK---GLAWLKENQPDVLCLQETKVQDEQFPLEPFHKEGYHVFFSGQ-------KGYSGVAIFSK 70 (254)
T ss_pred CEEEEEEcCcHHHhHHH---HHHHHHhcCCCEEEEEecccchhhCCHHHhhcCCcEEEEecC-------CCcceEEEEEc
Confidence 89999999999876664 899999999999999999987655555555668998777532 56779999999
Q ss_pred ecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEeeceEEEEEEEcCCCCCCchHhHHH
Q 006757 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (632)
Q Consensus 81 ~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~~~~~LinVY~P~~~~~~~er~~f 160 (632)
.. |+.+..++.. ...|.+||++.+++..+.|+|+|+|+++....++..+
T Consensus 71 ~~----------~~~~~~~~~~---------------------~~~~~~~r~i~~~~~~~~l~~~~~p~~~~~~~~~~~~ 119 (254)
T TIGR00195 71 EE----------PLSVRRGFGV---------------------EEEDAEGRIIMAEFDSFLVINGYFPNGSRDDSEKLPY 119 (254)
T ss_pred CC----------cceEEECCCC---------------------cccccCCCEEEEEECCEEEEEEEccCCCCCCCccHHH
Confidence 62 4554443320 1246799999999888999999999976555678889
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCC-----CCCchhHHHHHHHHHHHhcCCceEeeccccCCCC
Q 006757 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235 (632)
Q Consensus 161 k~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~-----~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~ 235 (632)
|.+|++.|.+++..+...+.+|||+||||+.+..+|++++. .+|.+.+ |.+|+.++. .+ |+|+||.+||..
T Consensus 120 r~~~~~~l~~~~~~~~~~~~pvIi~GDfN~~~~~~d~~~~~~~~~~~~~~~~e-~~~~~~l~~-~~--l~D~~r~~~~~~ 195 (254)
T TIGR00195 120 KLQWLEALQNYLEKLVDKDKPVLICGDMNIAPTEIDLHSPDENRNHTGFLPEE-REWLDRLLE-AG--LVDTFRKFNPDE 195 (254)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEeecccCCChhhccChhhcCCCcCcChHH-HHHHHHHHH-cC--CEeeecccCCCC
Confidence 99999999999998777788999999999999998876532 4555544 788988874 44 999999999984
Q ss_pred CCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCCCCCCCCC
Q 006757 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 315 (632)
Q Consensus 236 ~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~~~ 315 (632)
+.||||+++.+++..+++.||||||++..+.. .|.+|.|...... ...+
T Consensus 196 -~~~T~~~~~~~~~~~~~g~RID~i~~s~~~~~-------------~v~~~~i~~~~~~-----------------~~~~ 244 (254)
T TIGR00195 196 -GAYSWWDYRTKARDRNRGWRIDYFLVSEPLKE-------------RCVDCGIDYDIRG-----------------SEKP 244 (254)
T ss_pred -CCCcccCCcCCccccCCceEEEEEEECHHHHh-------------hhhEEEEcHHHhc-----------------CCCC
Confidence 46999999888777789999999999988643 6788888764211 1367
Q ss_pred CCccceEEEE
Q 006757 316 SDHAPVYMCL 325 (632)
Q Consensus 316 SDH~PV~~~l 325 (632)
|||+||.++|
T Consensus 245 SDH~Pv~~~~ 254 (254)
T TIGR00195 245 SDHCPVVLEF 254 (254)
T ss_pred CCcccEEEeC
Confidence 9999999875
No 5
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1e-36 Score=311.14 Aligned_cols=248 Identities=36% Similarity=0.649 Sum_probs=190.0
Q ss_pred CEEEEeecccccccccchhHH-HHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEEE
Q 006757 1 MKIVTYNVNGLRQRVSQFGSL-RKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l-~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl~ 79 (632)
|||+||||+|++...++ + .++|..++|||||||||+.....+...++...||..++... ...|+.|||||+
T Consensus 1 lri~t~Nv~g~~~~~~~---~~~~~l~~~~~DIv~LQE~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~G~ails 72 (255)
T TIGR00633 1 MKIISWNVNGLRARLHK---LFLDWLKEEQPDVLCLQETKVADEQFPAELFEELGYHVFFHGA-----KSKGYSGVAILS 72 (255)
T ss_pred CEEEEEecccHHHHhhc---cHHHHHHhcCCCEEEEEeccCchhhCCHhHhccCCceEEEeec-----ccCCcceEEEEE
Confidence 89999999999887775 5 99999999999999999986544433345567998877543 113667999999
Q ss_pred eecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEeeceEEEEEEEcCCCCCCchHhHH
Q 006757 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (632)
Q Consensus 80 R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~~~~~LinVY~P~~~~~~~er~~ 159 (632)
|.+ +..+..++. ....|.+||+|.+.++.+.|+++|+|+......++..
T Consensus 73 r~~----------~~~~~~~~~---------------------~~~~~~~~r~l~~~~~~~~i~~vy~p~~~~~~~~~~~ 121 (255)
T TIGR00633 73 KVE----------PLDVRYGFG---------------------GEEHDEEGRVITAEFDGFTVVNVYVPNGGSRGLERLE 121 (255)
T ss_pred cCC----------cceEEECCC---------------------CCcccCCCcEEEEEECCEEEEEEEccCCCCCCchhHH
Confidence 973 222333221 0235678999998888999999999998754567778
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCC-----CCCchhHHHHHHHHHHHhcCCceEeeccccCCC
Q 006757 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 234 (632)
Q Consensus 160 fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~-----~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~ 234 (632)
+|+.|++.|...+...+..+.++||+||||+++..+|+.+.. ..+...+ +.+|+.++. .| |.|+||.++|.
T Consensus 122 ~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~--l~D~~~~~~~~ 197 (255)
T TIGR00633 122 YKLQFWDALFQYYEKELDAGKPVIICGDMNVAHTEIDLGNPKENKGNAGFTPEE-REWFDELLE-AG--LVDTFRHFNPD 197 (255)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeecccCCChHHccChhhcCCCCCcCHHH-HHHHHHHHH-cC--CEecchhhCCC
Confidence 899999988887766666788999999999999888876432 2333323 678888775 54 99999999998
Q ss_pred CCCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCCCCCCCC
Q 006757 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLE 314 (632)
Q Consensus 235 ~~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~~ 314 (632)
..+.||||+.+...+..+.+.||||||++..+.. .+.++.|... ..
T Consensus 198 ~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~i~~~---------------------~~ 243 (255)
T TIGR00633 198 TEGAYTWWDYRSGARDRNRGWRIDYFLVSEPLAE-------------RVVDSYIDSE---------------------IR 243 (255)
T ss_pred CCCcCcCcCCccCccccCCceEEEEEEECHHHHh-------------hhcEeEECCC---------------------CC
Confidence 7667999999877666788999999999987532 4667777542 25
Q ss_pred CCCccceEEEE
Q 006757 315 GSDHAPVYMCL 325 (632)
Q Consensus 315 ~SDH~PV~~~l 325 (632)
+|||+||+++|
T Consensus 244 ~SDH~pv~~~~ 254 (255)
T TIGR00633 244 GSDHCPIVLEL 254 (255)
T ss_pred CCCcccEEEEE
Confidence 69999999987
No 6
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.84 E-value=1.6e-20 Score=197.31 Aligned_cols=254 Identities=25% Similarity=0.419 Sum_probs=189.9
Q ss_pred CEEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCC-eEEeeccCCCCCCCCCcceEEEEE
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFFSCTRTSDKGRTGYSGVATFC 79 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY-~~~fs~~~~~~~gr~GysGVAIl~ 79 (632)
++|+.|||.+++...+. .-..++.....|++|+|||+++-+..+...-...+| +.++... .++.||.|++.++
T Consensus 64 ~~i~~~~i~~~~~~~~~--~~~~~~~~~l~d~~~~~~t~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~~~~ 137 (335)
T KOG1294|consen 64 LNICPWDIAGLEACEKF--SGDPEISSELRDLQCLLETKCTIDSGPCSHPTEKGYTHSLLSCA----SKKDGYSGEIDYS 137 (335)
T ss_pred eecCchhhhhhhhhhcc--ccchhccccchhhhhhhhccceeccCcceecccCCcccceeecc----cccCCccceeeee
Confidence 36888999999887776 367778888999999999998754444333346788 5566655 3457899999998
Q ss_pred eecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEeeceEEEEEEEcCCCCCCchHhHH
Q 006757 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (632)
Q Consensus 80 R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~~~~~LinVY~P~~~~~~~er~~ 159 (632)
+. .|+.+..++.. + ...++..||+|++++..+.++|.|+|+...+ .....
T Consensus 138 ~~----------~p~~v~~~~~~------------~-------~s~h~~~g~~i~~e~e~~~l~~~y~p~~~~~-~~~~~ 187 (335)
T KOG1294|consen 138 KF----------KPLKVHYGFGA------------M-------GSDHRPVGRVIIAEFEIFILINTYVPNIGGG-LVNLV 187 (335)
T ss_pred ec----------ccceeeecccc------------c-------CCccCccceEEEEeecceeeccccCcccccc-cchhh
Confidence 87 36666665421 0 0247889999999999999999999998753 33444
Q ss_pred HH--HHHHHHHHHHHHHHHhc---CCcEEEeCCCCCCCCcccc---CC-------CCCCCchhHHHHHH-HHHHHhcCCc
Q 006757 160 FK--LQFFHVLQKRWEFLLCQ---GRRIFVVGDLNIAPAAIDR---CD-------AGPDFAKNEFRIWF-RSMLVESGGS 223 (632)
Q Consensus 160 fk--~~f~~~L~~~i~~l~~~---g~~VII~GDFN~~~~~iD~---~~-------~~~~~~~~~~r~~l-~~lL~~~g~~ 223 (632)
++ .++-..+...+..+-.. ..+++++||.|+.|..+|. +. ..++|.+++ |.|+ ..++. .| .
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nvs~~~i~~~~~~~~~~~~~~~~~~~t~e~-R~~~~~~~~~-~~-~ 264 (335)
T KOG1294|consen 188 YRILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVSHEEIDPSKPLVSPAGNTLSNAGFTPEE-RDSFFAELLE-KG-P 264 (335)
T ss_pred hhhhhhhHHHHHHHhhhccccccccCcceeccccccchhhccccccccccccCCcCCCCCCHHH-hhhHHHhhcc-CC-c
Confidence 44 44444444444443221 2489999999999999884 11 125677666 8898 56653 32 6
Q ss_pred eEeeccccCCCCCCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCc
Q 006757 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSY 303 (632)
Q Consensus 224 L~D~~R~~hP~~~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~ 303 (632)
++|+||.+||.....||+|.+..+.+..+-+.|+||++++...+. .+.++.|...
T Consensus 265 ~iDt~r~~~~~~~~~~t~Wk~~~~~r~~~~~~r~dy~~Vsk~~~n-------------~~r~~~Ic~r------------ 319 (335)
T KOG1294|consen 265 LIDTYRELHKDQKKAYTFWKYMPNGRQRGHGERCDYILVSKPGPN-------------NGRRFYICSR------------ 319 (335)
T ss_pred ceeehhhhcCCccccccchhhccccccCCCCCceeEEEecCcCCC-------------CCceeeeecC------------
Confidence 999999999999877999999999999999999999999998755 6778888763
Q ss_pred cccCCCCCCCCCCCccceEEEEe
Q 006757 304 RWKGGMSTRLEGSDHAPVYMCLG 326 (632)
Q Consensus 304 ~W~~~~~~~~~~SDH~PV~~~l~ 326 (632)
.+.+||||||++.|.
T Consensus 320 --------~~~gsdh~pi~~~~~ 334 (335)
T KOG1294|consen 320 --------PIHGSDHCPITLEFF 334 (335)
T ss_pred --------ccCCCCCCCeeeeec
Confidence 258999999999885
No 7
>PRK05421 hypothetical protein; Provisional
Probab=99.83 E-value=2.5e-19 Score=185.20 Aligned_cols=213 Identities=15% Similarity=0.164 Sum_probs=120.3
Q ss_pred CEEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEEEe
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl~R 80 (632)
|||+||||++.+..-.+ ..++.+ ..++|||||||++.... + ..++...+|...|.... ....|+.||||++|
T Consensus 44 lri~t~NI~~~~~~~~~--~~l~~l-~~~~DiI~LQEv~~~~~-~-~~~~~~~~~~~~~~~~~---~~~~~~~GvaiLSR 115 (263)
T PRK05421 44 LRLLVWNIYKQQRAGWL--SVLKNL-GKDADLVLLQEAQTTPE-L-VQFATANYLAADQAPAF---VLPQHPSGVMTLSK 115 (263)
T ss_pred eeEEEEEccccccccHH--HHHHHh-ccCCCEEEEEecccCcc-h-HHHhhcccchHHhcccc---ccCCCccceeEeee
Confidence 69999999988765222 255555 89999999999976432 1 12334445544333221 12346779999999
Q ss_pred ecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEE-Ee--e---ceEEEEEEEcCCCCCCc
Q 006757 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI-TD--H---GHFILFNVYGPRADSED 154 (632)
Q Consensus 81 ~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~vi-v~--~---~~~~LinVY~P~~~~~~ 154 (632)
.+ +.....+.+. ...-.++|.++ +. . +.+.|+|+|+++.....
T Consensus 116 ~p-----------i~~~~~~~~~--------------------~~~~~~~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~ 164 (263)
T PRK05421 116 AH-----------PVYCCPLRER--------------------EPWLRLPKSALITEYPLPNGRTLLVVNIHAINFSLGV 164 (263)
T ss_pred cc-----------cceeeccCCC--------------------CccccCcceeEEEEEEeCCCCEEEEEEECccccCcCh
Confidence 84 3221111100 00011234432 22 2 35999999997643221
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHhcCCceEeeccccCCC
Q 006757 155 TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 234 (632)
Q Consensus 155 ~er~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~ 234 (632)
.. +...+..|...+.. ...|+||+||||..... . ..++..++...+ +.|.+. |.
T Consensus 165 ~~----r~~q~~~l~~~~~~---~~~p~Il~GDFN~~~~~-----------~---~~~l~~~~~~~~--l~~~~~---~~ 218 (263)
T PRK05421 165 DV----YSKQLEPIGDQIAH---HSGPVILAGDFNTWSRK-----------R---MNALKRFARELG--LKEVRF---TD 218 (263)
T ss_pred HH----HHHHHHHHHHHHHh---CCCCEEEEcccccCccc-----------c---hHHHHHHHHHcC--CCccCc---CC
Confidence 22 23334444444432 35689999999963211 0 134666665554 555421 11
Q ss_pred CCCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCCCCCCCC
Q 006757 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLE 314 (632)
Q Consensus 235 ~~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~~ 314 (632)
... + ..++.||||||++ ++ .+.++.+.. ..
T Consensus 219 ~~~-~-----------~~~~~~ID~I~~~-~~---------------~v~~~~v~~----------------------~~ 248 (263)
T PRK05421 219 DQR-R-----------RAFGRPLDFVFYR-GL---------------NVSKASVLV----------------------TR 248 (263)
T ss_pred ccc-c-----------cccCCCcceEEEC-Cc---------------EEEEEEcCC----------------------CC
Confidence 110 1 0125799999985 32 456666653 26
Q ss_pred CCCccceEEEEecC
Q 006757 315 GSDHAPVYMCLGEV 328 (632)
Q Consensus 315 ~SDH~PV~~~l~~~ 328 (632)
+|||+||+++|...
T Consensus 249 ~SDH~Pv~a~l~l~ 262 (263)
T PRK05421 249 ASDHNPLLVEFSLK 262 (263)
T ss_pred CCCccCEEEEEEec
Confidence 89999999999753
No 8
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.74 E-value=1e-17 Score=176.31 Aligned_cols=183 Identities=33% Similarity=0.402 Sum_probs=127.1
Q ss_pred hhcccCCCCcEEEEeeceEEEEEEEcCCCCCCchHhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCC
Q 006757 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG 201 (632)
Q Consensus 122 ~~~~~D~eGR~viv~~~~~~LinVY~P~~~~~~~er~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~ 201 (632)
+...+|.+||++++++..+++++||+|....+..++ ++.|+..|..+++.++..|+++++ |+.+..+|....-
T Consensus 5 ~~~~~~~~~~~~~~~k~~~~~~~v~~~~~~~e~~~~---~~~~~~~l~~r~~~~~~~g~~~~~----~i~~~~i~~~~~~ 77 (335)
T KOG1294|consen 5 EALELDSEGRCVIVDKEMFVLINVYCPRNSPEISKR---RLRFAKVLHYRVEKLLKQGNRKVL----NICPWDIAGLEAC 77 (335)
T ss_pred hhhhhhccCCeeeeecccccccceeccccCCcchhh---hhhhhhHHHHHHHHHHHhCCeeEe----ecCchhhhhhhhh
Confidence 345689999999999999999999999998754444 899999999999999999999998 8777766544332
Q ss_pred CCCchhH-HHHHHHHHHHhcCC-ceEeeccccCCCCCCcccccCCCCCCcccCccceeEEEEEeCCCccccccccccccc
Q 006757 202 PDFAKNE-FRIWFRSMLVESGG-SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 279 (632)
Q Consensus 202 ~~~~~~~-~r~~l~~lL~~~g~-~L~D~~R~~hP~~~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~ 279 (632)
..+.... ...++.+++-.... -.+|..+..||+ .+.||+|.........+|+.+|||+.+.+-.++
T Consensus 78 ~~~~~~~~~~~~l~d~~~~~~t~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~~v~----------- 145 (335)
T KOG1294|consen 78 EKFSGDPEISSELRDLQCLLETKCTIDSGPCSHPT-EKGYTHSLLSCASKKDGYSGEIDYSKFKPLKVH----------- 145 (335)
T ss_pred hccccchhccccchhhhhhhhccceeccCcceecc-cCCcccceeecccccCCccceeeeeecccceee-----------
Confidence 2221100 01122222211111 248999999999 556999988877777899999999999764321
Q ss_pred ccceeeeEeecccccCCCCCCCCccccCCCCCCCCCCCccceEEEEecCCCCCCCCChHHHhhccccccchhHHHHHH
Q 006757 280 TCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSV 357 (632)
Q Consensus 280 ~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~~~SDH~PV~~~l~~~~~~~~~~~~~lw~~~k~~~rG~~i~l~s~ 357 (632)
|.. ..++|||+||+..+....+ ...|...|.|.+-+.++.++-.
T Consensus 146 -------------------------~~~----~~~~s~h~~~g~~i~~e~e-----~~~l~~~y~p~~~~~~~~~~~~ 189 (335)
T KOG1294|consen 146 -------------------------YGF----GAMGSDHRPVGRVIIAEFE-----IFILINTYVPNIGGGLVNLVYR 189 (335)
T ss_pred -------------------------ecc----cccCCccCccceEEEEeec-----ceeeccccCcccccccchhhhh
Confidence 211 1258999999987754332 4566677777666665554443
No 9
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.67 E-value=3.1e-16 Score=161.85 Aligned_cols=273 Identities=17% Similarity=0.184 Sum_probs=153.7
Q ss_pred CEEEEeecccccccc----cchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEE
Q 006757 1 MKIVTYNVNGLRQRV----SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVA 76 (632)
Q Consensus 1 mKIlSwNVnGlr~~~----~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVA 76 (632)
|||++.|++|+.-.- .|...+-+++.....||+.|||++...+--.-......-|.....|. .|-.| +|++
T Consensus 9 lriltlN~Wgip~~Sk~R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss~yPysh~FH----SGimG-aGL~ 83 (422)
T KOG3873|consen 9 LRILTLNIWGIPYVSKDRRHRMDAIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSSVYPYSHYFH----SGIMG-AGLC 83 (422)
T ss_pred eeeeEeeccccccccchhHHHHHHHhHHHhhcccchhhHHHHHHHHHHHHHHHhccccCchHHhhh----ccccc-CceE
Confidence 699999999985211 12235888999999999999999865443211111233343322222 23344 6999
Q ss_pred EEEeecCCCCCcccccceeee----ecccCcccccCcccccCccccchhhhcccCC-CCcEEE---Eee--ceEEEEEEE
Q 006757 77 TFCRVKSPFSSTEVALPVAAE----EGFTGLLETSGSKIMEGLEDFSKDELLKIDS-EGRCVI---TDH--GHFILFNVY 146 (632)
Q Consensus 77 Il~R~~~~f~~~~~~~Pi~~e----~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~-eGR~vi---v~~--~~~~LinVY 146 (632)
+|+|.+ |... ..+.|.+.. .. .-|- .|..|. +.+ ..+.++|.|
T Consensus 84 vfSK~P-----------I~~t~~~~y~lNG~p~~---i~-------------rGDWf~GK~Vgl~~l~~~g~~v~~yntH 136 (422)
T KOG3873|consen 84 VFSKHP-----------ILETLFHRYSLNGYPHA---IH-------------RGDWFGGKGVGLTVLLVGGRMVNLYNTH 136 (422)
T ss_pred EeecCc-----------hhhhhhhccccCCccce---ee-------------eccccccceeEEEEEeeCCEEeeeeehh
Confidence 999985 3211 112221110 00 0011 223222 122 234555554
Q ss_pred c--CCCCCCchHhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHhcCCce
Q 006757 147 G--PRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSF 224 (632)
Q Consensus 147 ~--P~~~~~~~er~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~L 224 (632)
. |-+.. +++-+..|....-.+..+++...+.+.-||++||||+.|.++-++ +|...| |
T Consensus 137 LHAeY~rq-~D~YL~HR~~QAwdlaqfi~~t~q~~~vVI~~GDLN~~P~dl~~~-----------------ll~~a~--l 196 (422)
T KOG3873|consen 137 LHAEYDRQ-NDEYLCHRVAQAWDLAQFIRATRQNADVVILAGDLNMQPQDLGHK-----------------LLLSAG--L 196 (422)
T ss_pred cccccccc-CchhhhHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCcccccee-----------------eeeccc--h
Confidence 4 33332 233444555566667778888778889999999999987765442 222343 7
Q ss_pred EeeccccCCCC---------------CCcccccCCCCC-----Ccc-cCccceeEEEEEeCCCcccccccccccccccce
Q 006757 225 FDVFRSKHPER---------------REAYTCWPSNTG-----AEQ-FNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283 (632)
Q Consensus 225 ~D~~R~~hP~~---------------~~~yT~~s~~~~-----a~~-~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v 283 (632)
+|+|+..|+.. +|. ||-+...- .+. .-.+.||||+|+.+..+. ..+
T Consensus 197 ~daw~~~h~~q~e~~~~r~s~~~~l~~g~-tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~~~------------~~~ 263 (422)
T KOG3873|consen 197 VDAWTSLHLDQCESDSFRLSEDKELVEGN-TCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGDCN------------AKI 263 (422)
T ss_pred hhhHhhhchhhhcCcccccchhhhhhcCC-cccCcchhhhHHHhCCCCccceeeeEEEEcCcceE------------EEe
Confidence 78888887653 232 45432111 111 124789999999987432 233
Q ss_pred eeeEeecccccCCCCCCCCccccCCCCCCCCCCCccceEEEEecCCCCCCCCChHHHhhccccccchhHH
Q 006757 284 NECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT 353 (632)
Q Consensus 284 ~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~~~SDH~PV~~~l~~~~~~~~~~~~~lw~~~k~~~rG~~i~ 353 (632)
.++++... + +| -+....|||..++++|++....+...+-.-|+..+...++-+-.
T Consensus 264 a~~~~t~~-r------vP--------~~d~s~SDH~Al~a~L~I~~~~~~~~p~t~v~~~~~~~~~~i~~ 318 (422)
T KOG3873|consen 264 AEVEFTEP-R------VP--------GEDCSYSDHEALMATLKIFKQPPRSEPVTTVEVNRLVLDEEICS 318 (422)
T ss_pred eeEEecCC-C------CC--------CCCCCccchhhheeEEEeecCCCCCCCccccccccchhHHHHHH
Confidence 44444431 1 11 12457899999999999876444444455666666655555443
No 10
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.65 E-value=9.1e-16 Score=152.20 Aligned_cols=75 Identities=28% Similarity=0.350 Sum_probs=42.9
Q ss_pred EEeecccccccc---cchhHHHHHHHhcCCcEEEEeccccc--cccchhhhHhhcCCeEEeeccCCCCCCCC---CcceE
Q 006757 4 VTYNVNGLRQRV---SQFGSLRKLLDSFDADIICFQETKLR--RQELKSDLVMADGYESFFSCTRTSDKGRT---GYSGV 75 (632)
Q Consensus 4 lSwNVnGlr~~~---~r~~~l~~~L~~~~aDIIcLQETk~~--~~~l~~~l~~~~GY~~~fs~~~~~~~gr~---GysGV 75 (632)
+||||+++.... .+...|.++|..++||||||||+... ...+...+....++..++.... ... +..|+
T Consensus 1 ~T~Nv~~~~~~~~~~~~~~~i~~~i~~~~~Dii~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~ 76 (249)
T PF03372_consen 1 MTWNVRGWNYRSDNDRKRREIAQWIAELDPDIIALQEVRNDDLSELLEEQLRGYLGYYGSFWPGN----SPPSDAGGYGV 76 (249)
T ss_dssp EEEEESTHHHHHHHHHHHHHHHHHHHHHT-SEEEEEEEESHHHHHHHHHHHHTCTTHEEEEEETS----SSTTCSSSEEE
T ss_pred CeEEeCcCcccccchhHHHHHHHHHHhcCCCEEEEecchhhhhhhhhhhhcccccccccceeccc----cccccccCceE
Confidence 799999942221 11224999999999999999999843 2222222222222233332221 111 24599
Q ss_pred EEEEeec
Q 006757 76 ATFCRVK 82 (632)
Q Consensus 76 AIl~R~~ 82 (632)
+|++|.+
T Consensus 77 ~i~~r~~ 83 (249)
T PF03372_consen 77 AILSRSP 83 (249)
T ss_dssp EEEESSC
T ss_pred EEEEccc
Confidence 9999984
No 11
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.64 E-value=6.5e-15 Score=165.94 Aligned_cols=182 Identities=20% Similarity=0.244 Sum_probs=92.4
Q ss_pred CEEEEeecccc---------------cccccchhHHHHHHHhcCCcEEEEecccccc-ccchhhhHhhcCCeEEeeccCC
Q 006757 1 MKIVTYNVNGL---------------RQRVSQFGSLRKLLDSFDADIICFQETKLRR-QELKSDLVMADGYESFFSCTRT 64 (632)
Q Consensus 1 mKIlSwNVnGl---------------r~~~~r~~~l~~~L~~~~aDIIcLQETk~~~-~~l~~~l~~~~GY~~~fs~~~~ 64 (632)
+|||||||..- -....|+..|++.|..++||||||||+.... ..+....+...||..+|.....
T Consensus 255 frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~~d~~~p~L~~~GY~Gv~~~Kt~ 334 (606)
T PLN03144 255 FTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHFEEFFAPELDKHGYQALYKKKTT 334 (606)
T ss_pred EEEEEeeeccccccCcccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHHHHHHHhhhhhcCceEEEeCCCC
Confidence 58999999521 1122344579999999999999999994321 1121223455789887753210
Q ss_pred C--CCCCCCcceEEEEEeecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcc--cCCCCcEEEEeec--
Q 006757 65 S--DKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLK--IDSEGRCVITDHG-- 138 (632)
Q Consensus 65 ~--~~gr~GysGVAIl~R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~--~D~eGR~viv~~~-- 138 (632)
. ..+.....|+|||+|.. .|++.+.. ..+.+-.++.. .+........ .+.+.. .|.-+.++.++..
T Consensus 335 ~~~~~~~~~~DGcAIFyr~d-rFeLv~~~---~ief~~~~lsl--t~~~~~s~~~--~~~l~Rl~kdNVAliv~Le~k~~ 406 (606)
T PLN03144 335 EVYTGNTYVIDGCATFFRRD-RFSLVKKY---EVEFNKAAQSL--TEALIPSAQK--KAALNRLLKDNVALIVVLEAKFG 406 (606)
T ss_pred ccccccccCCceeEEEEECc-ceEEEEee---eeeccchhhcc--Cccccccccc--hhhhhhhccCcEEEEEEEEEecc
Confidence 0 00111235999999984 55543110 00111000000 0000000000 000001 1222333334332
Q ss_pred -----------eEEEEEEEcCCCCCCchHhHHHHHHHHHHHHHHHHHHHh-cCCcEEEeCCCCCCCCc
Q 006757 139 -----------HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC-QGRRIFVVGDLNIAPAA 194 (632)
Q Consensus 139 -----------~~~LinVY~P~~~~~~~er~~fk~~f~~~L~~~i~~l~~-~g~~VII~GDFN~~~~~ 194 (632)
.|.|+|+|+-... +....|+.....|...++.+.. .+.||||+||||..++.
T Consensus 407 ~~~~~~~~~~~~l~VaNTHL~~~p----~~~dvRl~Q~~~Ll~~l~~~~~~~~~PvIlcGDFNS~P~S 470 (606)
T PLN03144 407 NQGADNGGKRQLLCVANTHIHANQ----ELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 470 (606)
T ss_pred cccccCCCCccEEEEEEeeeccCC----ccchhHHHHHHHHHHHHHHHhhcCCCceEEeccCCCCCCC
Confidence 4899999983322 2222344445555555555432 36799999999998764
No 12
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.62 E-value=8.9e-15 Score=148.36 Aligned_cols=233 Identities=19% Similarity=0.174 Sum_probs=125.5
Q ss_pred CEEEEeecccccccccc---hhHHHHHHHhcCCcEEEEeccccc----cccchh---hhHhhcCCeEEeeccCCCCCCCC
Q 006757 1 MKIVTYNVNGLRQRVSQ---FGSLRKLLDSFDADIICFQETKLR----RQELKS---DLVMADGYESFFSCTRTSDKGRT 70 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r---~~~l~~~L~~~~aDIIcLQETk~~----~~~l~~---~l~~~~GY~~~fs~~~~~~~gr~ 70 (632)
|+|+||||.-......+ ...+.+.+....+|||||||+--. ++.+.. .+....+...+++..........
T Consensus 10 ~~v~TyNih~~~~~~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 89 (259)
T COG3568 10 FKVLTYNIHKGFGAFDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGLAPYWWSGAAFGAVYGE 89 (259)
T ss_pred eEEEEEEEEEccCccCceecHHHHHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcCCccccchhhhhhhccc
Confidence 58999999633332111 134899999999999999999642 222221 11222233332221110000123
Q ss_pred CcceEEEEEeecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEE---Ee---eceEEEEE
Q 006757 71 GYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI---TD---HGHFILFN 144 (632)
Q Consensus 71 GysGVAIl~R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~vi---v~---~~~~~Lin 144 (632)
+..|++|++|. |+....... +.. ..+.|.|-++ ++ ++.|.|+|
T Consensus 90 ~~~GnaiLS~~-----------pi~~v~~~~-------------lp~-------~~~~~~Rgal~a~~~~~~g~~l~V~~ 138 (259)
T COG3568 90 GQHGNAILSRL-----------PIRDVENLA-------------LPD-------PTGLEPRGALLAEIELPGGKPLRVIN 138 (259)
T ss_pred ceeeeEEEecC-----------cccchhhcc-------------CCC-------CCCCCCceeEEEEEEcCCCCEEEEEE
Confidence 45699999976 332211110 000 0122445432 22 34799999
Q ss_pred EEcCCCCCCchHhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHhcCCce
Q 006757 145 VYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSF 224 (632)
Q Consensus 145 VY~P~~~~~~~er~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~L 224 (632)
+|+-- . ... |++.++.|.+.+ .+....|+|++||||..+..-++.-.. +..++.. ..+
T Consensus 139 ~HL~l-~--~~~----R~~Q~~~L~~~~--~l~~~~p~vl~GDFN~~p~s~~yr~~~--------~~~~~~~-----~~~ 196 (259)
T COG3568 139 AHLGL-S--EES----RLRQAAALLALA--GLPALNPTVLMGDFNNEPGSAEYRLAA--------RSPLNAQ-----AAL 196 (259)
T ss_pred Eeccc-c--HHH----HHHHHHHHHhhc--cCcccCceEEEccCCCCCCCccceecc--------CCchhhc-----ccc
Confidence 99963 2 123 333444444311 134455999999999887765442211 0011111 136
Q ss_pred EeeccccCCCCCCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcc
Q 006757 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYR 304 (632)
Q Consensus 225 ~D~~R~~hP~~~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~ 304 (632)
.+++...++-.. -||-+.. .-.||||||+++++ .+..+.+..+. .
T Consensus 197 ~~~~~~a~~~~~--~tfps~~-------p~lriD~Ifvs~~~---------------~i~~~~v~~~~-----------~ 241 (259)
T COG3568 197 TGAFAPAVGRTI--RTFPSNT-------PLLRLDRIFVSKEL---------------AIRSVHVLTDR-----------L 241 (259)
T ss_pred ccccCcccCccc--CCCCCCC-------ccccccEEEecCcc---------------cEEEEEeecCC-----------C
Confidence 666666555321 2333221 13599999999975 56667776641 1
Q ss_pred ccCCCCCCCCCCCccceEEEEecC
Q 006757 305 WKGGMSTRLEGSDHAPVYMCLGEV 328 (632)
Q Consensus 305 W~~~~~~~~~~SDH~PV~~~l~~~ 328 (632)
| -..|||+||.++|...
T Consensus 242 a-------~~aSDHlPl~aeL~~~ 258 (259)
T COG3568 242 A-------RVASDHLPLLAELRLK 258 (259)
T ss_pred c-------cccccccceEEEEecC
Confidence 3 2689999999999763
No 13
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.61 E-value=3.1e-14 Score=148.68 Aligned_cols=215 Identities=13% Similarity=0.124 Sum_probs=106.4
Q ss_pred CEEEEeecccccc-------cccchhHHHHHHHhcCCcEEEEecccccc--ccchhhhHhhcCCeEEee-ccCCCC----
Q 006757 1 MKIVTYNVNGLRQ-------RVSQFGSLRKLLDSFDADIICFQETKLRR--QELKSDLVMADGYESFFS-CTRTSD---- 66 (632)
Q Consensus 1 mKIlSwNVnGlr~-------~~~r~~~l~~~L~~~~aDIIcLQETk~~~--~~l~~~l~~~~GY~~~fs-~~~~~~---- 66 (632)
||||||||+.+.. .-.|...|...+...++|||||||+.-.. +.+.+.+...-.|...+. ......
T Consensus 1 lkVmtyNv~~l~~~~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~~~~~~~l~~~L~~~yp~~~~~~g~~~~g~~~~~ 80 (283)
T TIGR03395 1 IKILSHNVYMLSTNLYPNWGQMERADLIASADYIKNQDVVILNEAFDTSASKRLLDNLREEYPYQTDVIGRSKKGWDKTL 80 (283)
T ss_pred CeEEEEEeeeecccccCCccHhHHHHHHHHhhcccCCCEEEEecccchHHHHHHHHHHHhhCCceEeecccccccchhcc
Confidence 7999999986432 22333456666778899999999995322 122222222222222111 000000
Q ss_pred ----CCCCCcceEEEEEeecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEe----ec
Q 006757 67 ----KGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITD----HG 138 (632)
Q Consensus 67 ----~gr~GysGVAIl~R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~----~~ 138 (632)
....+-.|++||+|.+ |...... .+.. . .+.+. ....| ++.++ ..
T Consensus 81 g~~~~~~~~~~G~~iLSr~P-----------i~~~~~~--~f~~--~---~~~d~--------~~~kg-~l~a~i~~~g~ 133 (283)
T TIGR03395 81 GNYSSSALEDGGVAIVSKWP-----------IEEKIQY--IFNK--G---CGADN--------LSNKG-FAYVKINKNGK 133 (283)
T ss_pred ccccccCccCCEEEEEECCC-----------ccccEEE--EccC--C---CCCcc--------ccCCc-eEEEEEecCCe
Confidence 0011224999999984 3222111 0000 0 00000 00111 22222 23
Q ss_pred eEEEEEEEcCCCCCCc--hHhHHHHHHHHHHHHHHHHHH-HhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHH
Q 006757 139 HFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRS 215 (632)
Q Consensus 139 ~~~LinVY~P~~~~~~--~er~~fk~~f~~~L~~~i~~l-~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~ 215 (632)
.+.|+|+|+-...... ......|...++.|.+++... +..+.+|||+||||+.+.. . .+..
T Consensus 134 ~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~~~s------------~----~~~~ 197 (283)
T TIGR03395 134 KFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNIPKDETVLIGGDLNVNKGS------------N----EYHD 197 (283)
T ss_pred EEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccCCCCceEEEEeeCCCCCCC------------H----HHHH
Confidence 5899999997643210 011234666677777776542 2346789999999986532 1 2333
Q ss_pred HHHhcCCceEeeccccCCCCCCcccccCCCCCCc-----ccCccceeEEEEEeCCC
Q 006757 216 MLVESGGSFFDVFRSKHPERREAYTCWPSNTGAE-----QFNYGTRIDHILCAGPC 266 (632)
Q Consensus 216 lL~~~g~~L~D~~R~~hP~~~~~yT~~s~~~~a~-----~~n~gsRIDyIL~s~~~ 266 (632)
++...+ ..+.. +.. . .|||-.. .+.. +.....||||||++...
T Consensus 198 ml~~l~--~~~p~---~~g-~-~~T~d~~-~N~~a~~~~~~~~~~~lDyvl~~~~~ 245 (283)
T TIGR03395 198 MFKTLN--VSEPR---YVG-V-PATWDAT-TNSIAKYYYPKEEPEYLDYIFVSKSH 245 (283)
T ss_pred HHHHhc--ccCCC---cCC-C-CCCcCCC-cCchhhhhcCCCCcceEEEEEEECCC
Confidence 444333 33321 111 1 3677432 2211 12234699999999774
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=99.58 E-value=1.1e-13 Score=169.93 Aligned_cols=261 Identities=19% Similarity=0.219 Sum_probs=130.3
Q ss_pred CEEEEeecccccc---cccchhHHHHHHHhc-CCcEEEEeccccccc-------c-----chhhhHhhcCCeEEeeccCC
Q 006757 1 MKIVTYNVNGLRQ---RVSQFGSLRKLLDSF-DADIICFQETKLRRQ-------E-----LKSDLVMADGYESFFSCTRT 64 (632)
Q Consensus 1 mKIlSwNVnGlr~---~~~r~~~l~~~L~~~-~aDIIcLQETk~~~~-------~-----l~~~l~~~~GY~~~fs~~~~ 64 (632)
|||+||||+.+.. ...+ ..+..+|+.+ ++|||||||+.-... + ...+.+...||..|......
T Consensus 11 l~VlTyNv~~~~~~~~~~~~-~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 89 (1452)
T PTZ00297 11 ARVLSYNFNILPRGCGGFQH-ERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLVDELKARGFHHYVISKQP 89 (1452)
T ss_pred eEEEEEEccccCCCcccccH-HHHHHHHHhccCCCEEEEecccccccccccccccchhhHHHHHHHHhcCCceeEeecCc
Confidence 6999999985532 1222 3488899995 779999999964320 0 00123345688665421110
Q ss_pred CCCC-----CCCcceEEEEEeecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcE---EEEe
Q 006757 65 SDKG-----RTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRC---VITD 136 (632)
Q Consensus 65 ~~~g-----r~GysGVAIl~R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~---viv~ 136 (632)
.... --+-.|+||++|. ||...+.+. +.. ....+ +.+.|- ..++
T Consensus 90 ~~~~~~~~~~~~~~G~AILSR~-----------PI~~~~~~~-l~~-------~~~~~---------~~~~RG~L~a~I~ 141 (1452)
T PTZ00297 90 SYLTMLRYNVCSDNGLIIASRF-----------PIWQRGSYT-FRN-------HERGE---------QSVRRGCLFAEVE 141 (1452)
T ss_pred cccccccCccccCCEEEEEECC-----------Chhhceeee-cCc-------ccccc---------cccccceEEEEEE
Confidence 0000 0023499999999 443322221 000 00000 011122 1222
Q ss_pred e-------ceEEEEEEEcCCCCCCchHhHHHHHHHHHHHHHHHHHHH---------hcCCcEEEeCCCCCCCCccccCCC
Q 006757 137 H-------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL---------CQGRRIFVVGDLNIAPAAIDRCDA 200 (632)
Q Consensus 137 ~-------~~~~LinVY~P~~~~~~~er~~fk~~f~~~L~~~i~~l~---------~~g~~VII~GDFN~~~~~iD~~~~ 200 (632)
. +.+.|+|+|+-..... ..| ++....|..+++..+ ..+.|+||+||||+.- +|+...
T Consensus 142 vp~~~g~~~~v~v~~tHL~~~~~~-~~R----~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~~--~~~~~~ 214 (1452)
T PTZ00297 142 VPLAEGGSQRIVFFNVHLRQEDSL-PST----SSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNING--IDPHNG 214 (1452)
T ss_pred ccccCCCCceEEEEEeCCCCCCCc-chH----HHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCcc--cccccc
Confidence 2 3699999999765331 223 333444444444311 2456899999999731 232211
Q ss_pred CCCCchhHHHHHHHHHHHhcCCceEeecccc---CCCCCCcccccCCCC-CCcccCccceeEEEEEeCCCcccccccccc
Q 006757 201 GPDFAKNEFRIWFRSMLVESGGSFFDVFRSK---HPERREAYTCWPSNT-GAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276 (632)
Q Consensus 201 ~~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~---hP~~~~~yT~~s~~~-~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh 276 (632)
.. ...+....+.. |...+.++.|+++.. ||......+||.... -.+......||||||+++.+
T Consensus 215 ~~--~s~e~~~ml~~-l~~~~~~l~dv~~~~~~~~~~T~p~~~~fP~~~p~~~~~~~~~riD~Ifv~~~v---------- 281 (1452)
T PTZ00297 215 GH--PTKRFQELLNE-LQDLGSGVREVIYDETGQHPPTRPPILFFPEQSKLERYSSTPQRQDYFFVTPCV---------- 281 (1452)
T ss_pred CC--ccHHHHHHHHH-hhhccccHhHHhHhhcCCCCCCCCccccccccCccccccCCCcceeEEEEeCCc----------
Confidence 00 01121222322 233333466665433 332222244444321 11111234699999998764
Q ss_pred cccccceeeeEeecccccCCCCCCCCccccCCCCCCCCCCCccceEEEEecC
Q 006757 277 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEV 328 (632)
Q Consensus 277 ~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~~~SDH~PV~~~l~~~ 328 (632)
.|.++.|...... ....| ...|||+||.++|...
T Consensus 282 -----~v~~~~v~~~~~~------~~~~~-------~~~SDH~Pv~a~l~l~ 315 (1452)
T PTZ00297 282 -----QVEKPRIEKFVVS------SRRPY-------TYLSDHFGVSARLTLP 315 (1452)
T ss_pred -----eEEEEEEeccccc------CCCCC-------CCcCcCccEEEEEEeC
Confidence 5666776542100 00123 4689999999999874
No 15
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.50 E-value=9.6e-14 Score=138.39 Aligned_cols=198 Identities=17% Similarity=0.222 Sum_probs=121.0
Q ss_pred EEEEeecccccc--cccchhHHHHHHHhcCCcEEEEeccccccccchhhhHh-hcCCeEEeeccCCCCCCCCCcceEEEE
Q 006757 2 KIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVM-ADGYESFFSCTRTSDKGRTGYSGVATF 78 (632)
Q Consensus 2 KIlSwNVnGlr~--~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~-~~GY~~~fs~~~~~~~gr~GysGVAIl 78 (632)
.+++|||.||.. ...|.+++.++|..+.||||||||+--..-.. +-. ..-|..|+. ...+|.|.+++
T Consensus 101 S~~~WnidgLdln~l~~RMrAv~H~i~l~sPdiiflQEV~p~~y~~---~~K~~s~y~i~~~-------~~~~~~~~~~l 170 (349)
T KOG2756|consen 101 SLITWNIDGLDLNNLSERMRAVCHYLALYSPDVIFLQEVIPPYYSY---LKKRSSNYEIITG-------HEEGYFTAIML 170 (349)
T ss_pred EEEEeeccccccchHHHHHHHHHHHHHhcCCCEEEEeecCchhhHH---HHHhhhheeEEEe-------ccceeeeeeee
Confidence 578999999743 34444579999999999999999994211111 111 122344443 23567788888
Q ss_pred EeecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEE-Ee----eceEEEEEEEcCCCCCC
Q 006757 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI-TD----HGHFILFNVYGPRADSE 153 (632)
Q Consensus 79 ~R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~vi-v~----~~~~~LinVY~P~~~~~ 153 (632)
.+..+..+.. +.+ ++. --..+|-+. ++ ...+++++.|+-.....
T Consensus 171 ~~s~~~Vks~---------~~i--------~F~--------------NS~M~R~L~I~Ev~v~G~Kl~l~tsHLEStr~h 219 (349)
T KOG2756|consen 171 KKSRVKVKSQ---------EII--------PFP--------------NSKMMRNLLIVEVNVSGNKLCLMTSHLESTRGH 219 (349)
T ss_pred ehhhcCcccc---------cee--------ccC--------------cchhhheeEEEEEeecCceEEEEeccccCCCCC
Confidence 7664321111 100 000 012345543 33 24689999999777766
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHhcCCceEeeccccC-
Q 006757 154 DTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH- 232 (632)
Q Consensus 154 ~~er~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~h- 232 (632)
.++|.+....-++.+++.|+.+ ++..||++||+|..-....+|.. + . +++|+|..+.
T Consensus 220 ~P~r~~qF~~~~~k~~EaIe~l--PnA~ViFGGD~NlrD~ev~r~~l-----P-------------D--~~vDvWE~lg~ 277 (349)
T KOG2756|consen 220 APERMNQFKMVLKKMQEAIESL--PNATVIFGGDTNLRDREVTRCGL-----P-------------D--NIVDVWEFLGK 277 (349)
T ss_pred ChHHHHHHHHHHHHHHHHHHhC--CCceEEEcCcccchhhhcccCCC-----C-------------c--hHHHHHHHhCC
Confidence 6777765555567777777765 88899999999964322222210 1 1 3788998887
Q ss_pred CCCCCcccccCCCCCCcccC--ccceeEEEEEe
Q 006757 233 PERREAYTCWPSNTGAEQFN--YGTRIDHILCA 263 (632)
Q Consensus 233 P~~~~~yT~~s~~~~a~~~n--~gsRIDyIL~s 263 (632)
|..-+ |||-.........+ ...|+|+||+.
T Consensus 278 p~~~~-FTwDT~~N~nl~G~~a~k~RfDRi~~r 309 (349)
T KOG2756|consen 278 PKHCQ-FTWDTQMNSNLGGTAACKLRFDRIFFR 309 (349)
T ss_pred CCcCc-eeeecccCcccchhHHHHHHHHHHhhh
Confidence 76555 99877654333322 23699999994
No 16
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.46 E-value=2e-12 Score=132.25 Aligned_cols=151 Identities=15% Similarity=0.164 Sum_probs=85.9
Q ss_pred CEEEEeecccccccccc-h-hHHHHHHHhc-CCcEEEEecccccccc--------------ch-hh-hH-----hhcCCe
Q 006757 1 MKIVTYNVNGLRQRVSQ-F-GSLRKLLDSF-DADIICFQETKLRRQE--------------LK-SD-LV-----MADGYE 56 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r-~-~~l~~~L~~~-~aDIIcLQETk~~~~~--------------l~-~~-l~-----~~~GY~ 56 (632)
+|++|||.+|-...... . -.+.++|... .+||++|||+-.-... +. .+ .+ ...++.
T Consensus 25 ~~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~~~~v~ey~w~l~~~srpgm~ 104 (271)
T PRK15251 25 YKVATWNLQGSSASTESKWNVNVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGVGIPIDEYTWNLGTRSRPNQV 104 (271)
T ss_pred ceEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCEEEEEecCCCccccccccccccccccccCcccEEEEccCccCCCce
Confidence 48999999998543322 1 1488888875 5999999998432111 01 11 01 123455
Q ss_pred EEeeccCCCCCCCCCcceEEEEEeecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEe
Q 006757 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITD 136 (632)
Q Consensus 57 ~~fs~~~~~~~gr~GysGVAIl~R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~ 136 (632)
.+|....+ .+ .|..|+||++|.+ .....-+. . | .......+.++
T Consensus 105 YiY~~aiD--~~-ggr~glAIlSr~~-----------a~~~~~l~-~-----p----------------~~~~Rpilgi~ 148 (271)
T PRK15251 105 YIYYSRVD--VG-ANRVNLAIVSRRR-----------ADEVIVLR-P-----P----------------TVASRPIIGIR 148 (271)
T ss_pred EEEEeccc--CC-CCceeEEEEeccc-----------ccceEEec-C-----C----------------CCcccceEEEE
Confidence 44443321 22 2445999999984 11111111 0 0 11133445567
Q ss_pred eceEEEEEEEcCCCCCCchHhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCc
Q 006757 137 HGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAA 194 (632)
Q Consensus 137 ~~~~~LinVY~P~~~~~~~er~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~ 194 (632)
.+.++++++|+.+... .++ ...++.+.+..... ....++||+||||..++.
T Consensus 149 i~~~~ffstH~~a~~~--~da----~aiV~~I~~~f~~~-~~~~pw~I~GDFNr~P~s 199 (271)
T PRK15251 149 IGNDVFFSIHALANGG--TDA----GAIVRAVHNFFRPN-MRHINWMIAGDFNRSPDR 199 (271)
T ss_pred ecCeEEEEeeecCCCC--ccH----HHHHHHHHHHHhhc-cCCCCEEEeccCCCCCcc
Confidence 7779999999998743 233 33455555554311 123689999999987664
No 17
>PF06839 zf-GRF: GRF zinc finger; InterPro: IPR010666 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This presumed zinc-binding domain is found in a variety of DNA-binding proteins. It seems likely that this domain is involved in nucleic acid binding. It is named GRF after three conserved residues in the centre of the alignment of the domain. This zinc finger may be related to IPR000380 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=99.39 E-value=3e-13 Score=101.79 Aligned_cols=45 Identities=40% Similarity=0.897 Sum_probs=41.1
Q ss_pred CCCCCCCccceeeeecCCCCCCCeeeeeccCCCCCCCCCCCCCCceeeccCC
Q 006757 577 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 628 (632)
Q Consensus 577 p~c~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~~f~W~~~~ 628 (632)
|+|. |+++|++++++|.|+|.||.||.|++..+ .+|+||+|+|+.
T Consensus 1 p~C~-Cg~~~~~~~s~k~~~N~GR~Fy~C~~~~~------~~C~fF~W~De~ 45 (45)
T PF06839_consen 1 PKCP-CGEPAVRRTSKKTGPNPGRRFYKCPNYKD------KGCNFFQWEDEM 45 (45)
T ss_pred CCCC-CCCEeEEEEEeCCCCCCCCcceECCCCCC------CCcCCEEeccCc
Confidence 7899 99999999999999999999999998733 789999999973
No 18
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=99.35 E-value=4.1e-12 Score=114.27 Aligned_cols=99 Identities=24% Similarity=0.359 Sum_probs=54.7
Q ss_pred EEEEEEEcCCCCCCchHhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHh
Q 006757 140 FILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE 219 (632)
Q Consensus 140 ~~LinVY~P~~~~~~~er~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~ 219 (632)
|+|+|||+|+.. .+..|++.|...+... ...++||+||||+.+..++... ........|.+++.+
T Consensus 1 i~i~~vY~pp~~--------~~~~~~~~l~~~~~~~--~~~~~Ii~GDFN~~~~~w~~~~-----~~~~~~~~l~~~~~~ 65 (119)
T PF14529_consen 1 ITIISVYAPPSS--------EREEFFDQLRQLLKNL--PPAPIIIGGDFNAHHPNWDSSN-----TNSRRGEQLLDWLDS 65 (119)
T ss_dssp EEEEEEE--TTS---------CHHHHHHHHHHHHCC--TTSSEEEEEE-----GGGT-SC-----HHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCc--------cHHHHHHHHHHHHHhC--CCCCEEEEeECCCCchhhhhcc-----ccchhHHHHHHHhhh
Confidence 579999999965 2345666666655542 1128999999999766665321 110224557777877
Q ss_pred cCCceEeeccccCCCCCCcccccCCCCCCcccCccceeEEEEEeCCCc
Q 006757 220 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267 (632)
Q Consensus 220 ~g~~L~D~~R~~hP~~~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l 267 (632)
.+ |.++ ++... .|||++... ++|||+||++..+.
T Consensus 66 ~~--l~~~----~~~~~-~~T~~~~~~-------~s~iD~~~~s~~~~ 99 (119)
T PF14529_consen 66 HN--LVDL----NPPGR-PPTFISNSH-------GSRIDLILTSDNLL 99 (119)
T ss_dssp CT--EEE-------TT----SEEECCC-------EE--EEEEEECCGC
T ss_pred ce--eeee----ecCCC-CCcccCCCC-------CceEEEEEECChHH
Confidence 75 8887 33323 399988753 68999999999864
No 19
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.18 E-value=7.2e-11 Score=122.07 Aligned_cols=143 Identities=18% Similarity=0.177 Sum_probs=79.8
Q ss_pred EEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEEEee
Q 006757 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRV 81 (632)
Q Consensus 2 KIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl~R~ 81 (632)
++++.|+..-+....+ ++..+...++|+|.+||+..--.... .+....|..|..+. +..|..|+++++|.
T Consensus 90 ~~l~~N~r~~n~~~~k---~Lsl~~~~~~D~v~~~E~~~~~~~~~--~~l~~~yP~~~~~~-----~~~~~~~~a~~sr~ 159 (309)
T COG3021 90 WNLQKNVRFDNASVAK---LLSLIQQLDADAVTTPEGVQLWTAKV--GALAAQYPAFILCQ-----HPTGVFTLAILSRR 159 (309)
T ss_pred hhhhhhccccCcCHHH---HHHHHhhhCcchhhhHHHHHHhHhHH--HHHHHhCCceeecC-----CCCCeeeeeecccc
Confidence 5667777665555443 88888888899999999953222211 14456677655443 22355689999887
Q ss_pred cCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEE----eeceEEEEEEEcCCCCCCchHh
Q 006757 82 KSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVIT----DHGHFILFNVYGPRADSEDTVR 157 (632)
Q Consensus 82 ~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv----~~~~~~LinVY~P~~~~~~~er 157 (632)
. |+|....+ +.+ ....++.+.. +...++|+++|.-+.... .
T Consensus 160 ~--------~~~~~~~e--~~~----------------------~~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~---~ 204 (309)
T COG3021 160 P--------CCPLTEAE--PWL----------------------RLPKSALATAYPLPDGTELTVVALHAVNFPVG---T 204 (309)
T ss_pred c--------cccccccC--ccc----------------------cCCccceeEEEEcCCCCEEEEEeeccccccCC---c
Confidence 2 12322111 100 1122333222 234688888888643321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCC
Q 006757 158 IQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPA 193 (632)
Q Consensus 158 ~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~ 193 (632)
..++ ..+..|... +..-..+||++||||+.+.
T Consensus 205 ~~~~-~ql~~l~~~---i~~~~gpvIlaGDfNa~pW 236 (309)
T COG3021 205 DPQR-AQLLELGDQ---IAGHSGPVILAGDFNAPPW 236 (309)
T ss_pred cHHH-HHHHHHHHH---HHcCCCCeEEeecCCCcch
Confidence 2233 333333333 3334589999999998653
No 20
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=99.07 E-value=1.1e-09 Score=118.73 Aligned_cols=145 Identities=23% Similarity=0.288 Sum_probs=86.5
Q ss_pred hhHHHHHHHhcCCcEEEEecccccccc-chhhhHhhcCCeEEeeccCCCCCCCCCcceEEEEEeecCCCCCcccccceee
Q 006757 18 FGSLRKLLDSFDADIICFQETKLRRQE-LKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAA 96 (632)
Q Consensus 18 ~~~l~~~L~~~~aDIIcLQETk~~~~~-l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl~R~~~~f~~~~~~~Pi~~ 96 (632)
.+.|+..|...+||||||||+...... +....+...||+.+|.... + ....||||+++.. .|++... .+|..
T Consensus 151 ~~~Ll~EL~~~dpDIlCLQEVq~d~~~~~~~~~~~~lGy~~~~~r~t----~-~KthG~ai~w~~~-~F~lv~~-~~l~y 223 (495)
T KOG2338|consen 151 SQNLLNELKHYDPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFFKRRT----G-TKTHGVAILWHSA-KFKLVNH-SELNY 223 (495)
T ss_pred hHHHHHHHhhcCCCeeeehhhhhhhhHHHHHHHHhhcCceEEEEecc----C-CCCceEEEEEecc-cceeccc-chhhc
Confidence 356999999999999999999654322 2223455689998775431 1 2234999999884 4554311 11111
Q ss_pred eecccCcccccCcccccCccccchhhhcccCCCCcEEEEee-------ceEEEEEEEcCCCCCCchHhHHHHHHHHHHHH
Q 006757 97 EEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH-------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169 (632)
Q Consensus 97 e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~-------~~~~LinVY~P~~~~~~~er~~fk~~f~~~L~ 169 (632)
... ...+...|.-|-+|.+++ ..+.|+|.|+=....+..+|+. ....|.
T Consensus 224 ~~~--------------------~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~vrL~----Q~~iiL 279 (495)
T KOG2338|consen 224 FDS--------------------GSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDVRLA----QVYIIL 279 (495)
T ss_pred ccc--------------------cchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccchhhH----HHHHHH
Confidence 100 111334556666666654 2588899887554333344544 344444
Q ss_pred HHHHHHHh---cCCcEEEeCCCCCCCC
Q 006757 170 KRWEFLLC---QGRRIFVVGDLNIAPA 193 (632)
Q Consensus 170 ~~i~~l~~---~g~~VII~GDFN~~~~ 193 (632)
+.+++... .+-|+|+|||||+.++
T Consensus 280 ~~~~~~~~~~~~~~pi~l~GDfNt~p~ 306 (495)
T KOG2338|consen 280 AELEKMSKSSKSHWPIFLCGDFNTEPD 306 (495)
T ss_pred HHHHHHHhhcccCCCeEEecCCCCCCC
Confidence 44444433 3459999999999875
No 21
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.07 E-value=5.6e-09 Score=108.44 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=44.0
Q ss_pred CEEEEeeccccccccc----chhHHHHHHHhcCCcEEEEecccccc-ccchhhhH------hhcCCeEEeeccCCCCCCC
Q 006757 1 MKIVTYNVNGLRQRVS----QFGSLRKLLDSFDADIICFQETKLRR-QELKSDLV------MADGYESFFSCTRTSDKGR 69 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~----r~~~l~~~L~~~~aDIIcLQETk~~~-~~l~~~l~------~~~GY~~~fs~~~~~~~gr 69 (632)
|||+||||+.+..... +...|.++|. ++|||++||+.-.. ..+. .++ ...+|..+.+.. -|+
T Consensus 18 l~I~SfNIr~fgd~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~-~ll~~Ln~~~~~~Y~~v~s~r----~gr 90 (276)
T smart00476 18 LRICAFNIQSFGDSKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVP-KLMDQLNSDSPNTYSYVSSEP----LGR 90 (276)
T ss_pred EEEEEEECcccCCccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHH-HHHHHHhhcCCCCceEEecCC----CCC
Confidence 6999999985543211 2234666665 88999999996432 1221 111 113788766543 233
Q ss_pred CCc-ceEEEEEeec
Q 006757 70 TGY-SGVATFCRVK 82 (632)
Q Consensus 70 ~Gy-sGVAIl~R~~ 82 (632)
.+| --.++++|..
T Consensus 91 ~~~~E~~a~~Yr~d 104 (276)
T smart00476 91 NSYKEQYLFLYRSD 104 (276)
T ss_pred CCCCEEEEEEEecc
Confidence 332 2478888873
No 22
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=98.80 E-value=4.8e-08 Score=102.19 Aligned_cols=81 Identities=27% Similarity=0.377 Sum_probs=51.3
Q ss_pred CEEEEeeccc---ccc-----------cccchhHHHHHHHhcCCcEEEEecccccc-ccchhhhHhhcCCeEEeeccCC-
Q 006757 1 MKIVTYNVNG---LRQ-----------RVSQFGSLRKLLDSFDADIICFQETKLRR-QELKSDLVMADGYESFFSCTRT- 64 (632)
Q Consensus 1 mKIlSwNVnG---lr~-----------~~~r~~~l~~~L~~~~aDIIcLQETk~~~-~~l~~~l~~~~GY~~~fs~~~~- 64 (632)
++|||||+-. ++. .-.|++.|++.|..+++||+||||+.... +.+-.+.+...||+..|.....
T Consensus 31 ftimTYN~Laq~y~~r~~y~~s~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~k~~k 110 (378)
T COG5239 31 FTIMTYNVLAQTYATRKMYPYSGWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIPKERK 110 (378)
T ss_pred eEEEehhhhhhhhccccccCCchhhhhhHHHHHHHHHHHhccCCceeeeehhhhhHHHHHHHHHhcccccceEEecCCCc
Confidence 4799999921 110 11234578999999999999999996532 2344455677899987754311
Q ss_pred -C---CCCCCCcceEEEEEee
Q 006757 65 -S---DKGRTGYSGVATFCRV 81 (632)
Q Consensus 65 -~---~~gr~GysGVAIl~R~ 81 (632)
+ ....+.--|++|+.+.
T Consensus 111 ~~~m~~~d~t~~dGc~if~k~ 131 (378)
T COG5239 111 VKWMIDYDTTKVDGCAIFLKR 131 (378)
T ss_pred ccccccccccccceEEEEEEe
Confidence 0 0000123499999987
No 23
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.71 E-value=2.9e-07 Score=97.67 Aligned_cols=154 Identities=21% Similarity=0.202 Sum_probs=81.4
Q ss_pred EEEEeecccccccccchhHHHHHHHh-------cCCcE--EEEecc-ccccccc-----------hhhhHh--h--cCCe
Q 006757 2 KIVTYNVNGLRQRVSQFGSLRKLLDS-------FDADI--ICFQET-KLRRQEL-----------KSDLVM--A--DGYE 56 (632)
Q Consensus 2 KIlSwNVnGlr~~~~r~~~l~~~L~~-------~~aDI--IcLQET-k~~~~~l-----------~~~l~~--~--~GY~ 56 (632)
-|+||||+|...+... .+..+|.. ..+|| |.|||. .+....+ ...+.. . ..|.
T Consensus 6 ~v~TwNv~~~~~~p~~--~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~~~~~~~~~W~~~i~~~l~~~~~Y~ 83 (310)
T smart00128 6 LVGTWNVGGLKADPKV--DVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLETIAGKERLWSKLIESSLNGDGQYN 83 (310)
T ss_pred EEEEEECCCccCCChh--hHHHhhccccccccCCCCCEEEEEeeeecccchhhhhhccchhHHHHHHHHHHhcCCCCceE
Confidence 5789999997522222 36777765 67999 669998 2211000 000111 1 3454
Q ss_pred EEeeccCCCCCCCCCcceEEEEEeecCCCCCccccccee---eeecccCcccccCcccccCccccchhhhcccCCCCcEE
Q 006757 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA---AEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCV 133 (632)
Q Consensus 57 ~~fs~~~~~~~gr~GysGVAIl~R~~~~f~~~~~~~Pi~---~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~v 133 (632)
...+. ..+..++.||+|..+.... ..+. +..|+.|. ..+..|..+
T Consensus 84 ~v~~~-------~l~gi~l~vf~~~~~~~~i----~~v~~~~v~~G~~~~---------------------~~nKG~v~i 131 (310)
T smart00128 84 VLAKV-------RLVGILVLVFVKANHLVYI----KDVETFTVKTGMGGL---------------------WGNKGAVAV 131 (310)
T ss_pred EEeee-------eecceEEEEEEehhhcCcc----ceeEeeeeeccccce---------------------eecCceEEE
Confidence 43332 2344578888887532111 1111 11222111 124566776
Q ss_pred EEeec--eEEEEEEEcCCCCCCchHhHHHHHHHHHHHHHHHHH----H--HhcCCcEEEeCCCCCCCC
Q 006757 134 ITDHG--HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF----L--LCQGRRIFVVGDLNIAPA 193 (632)
Q Consensus 134 iv~~~--~~~LinVY~P~~~~~~~er~~fk~~f~~~L~~~i~~----l--~~~g~~VII~GDFN~~~~ 193 (632)
.+... .|.++|+|+++.... .+.|..-+..+...+.- . +....++|++||||-..+
T Consensus 132 ~~~~~~~~~~fv~~HL~a~~~~----~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~ 195 (310)
T smart00128 132 RFKLSDTSFCFVNSHLAAGASN----VEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLD 195 (310)
T ss_pred EEEEcCcEEEEEeeccccccch----hhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceeec
Confidence 66654 599999999996542 23344444444322210 0 123578999999997544
No 24
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=98.58 E-value=1e-07 Score=102.49 Aligned_cols=67 Identities=27% Similarity=0.392 Sum_probs=41.6
Q ss_pred hHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeecc-CCCCCCCCCcceEEEEEeecCCCCC
Q 006757 19 GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT-RTSDKGRTGYSGVATFCRVKSPFSS 87 (632)
Q Consensus 19 ~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~-~~~~~gr~GysGVAIl~R~~~~f~~ 87 (632)
..+.+.|...+||||||||+ ..-..+....+...||.+.|..- +.....++.-.|+|||.|.. .|++
T Consensus 53 ~~~~~ei~~~~ad~icLqev-~~~~~~~~p~l~~~gY~g~~~~k~~~~~~~~~~~dGcaiffk~s-~f~l 120 (361)
T KOG0620|consen 53 QLLLEEILNYNADILCLQEV-DRYHDFFSPELEASGYSGIFIEKTRMGEVELEKIDGCAIFFKPS-LFQL 120 (361)
T ss_pred HHHHHHHhCCCcceeecchh-hHHHHHccchhhhcCCcceeecccccchhhcccCceeeeeecch-HHhh
Confidence 46888888899999999998 22222222334555999887641 00000133456999999874 3444
No 25
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0002 Score=83.00 Aligned_cols=50 Identities=16% Similarity=0.316 Sum_probs=28.3
Q ss_pred ceEEEEEEEcCCCCCCchHhHHHHHHHHHHHHHHHHH----HHhcCCcEEEeCCCCCC
Q 006757 138 GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF----LLCQGRRIFVVGDLNIA 191 (632)
Q Consensus 138 ~~~~LinVY~P~~~~~~~er~~fk~~f~~~L~~~i~~----l~~~g~~VII~GDFN~~ 191 (632)
..|.+++-|.-++... .+.|..-|..+...+.- .+.....|+++||||-.
T Consensus 673 TsfCFv~SHlAAG~sn----v~ERn~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYR 726 (1080)
T KOG0566|consen 673 TSFCFVCSHLAAGQSN----VEERNEDYKTIARKLRFPRGRMIFSHDYIFWLGDFNYR 726 (1080)
T ss_pred ccEEEEecccccccch----HhhhhhhHHHHHHhccccCCccccCCceEEEeccccee
Confidence 3688888888776542 22233334333332221 12345679999999964
No 26
>KOG1956 consensus DNA topoisomerase III alpha [Replication, recombination and repair]
Probab=97.44 E-value=5.1e-05 Score=84.46 Aligned_cols=40 Identities=30% Similarity=0.752 Sum_probs=35.0
Q ss_pred CCCCCCCccceeeeecCCCCCCCeeeeeccCCCCCCCCCCCCCCceeec
Q 006757 577 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 625 (632)
Q Consensus 577 p~c~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~~f~W~ 625 (632)
..|. |+..++.++|.|.|||.||.||.|..+ ..|+||.|+
T Consensus 719 ~~c~-c~~ra~~l~v~k~~~nrGR~f~sc~~~--------k~c~ff~w~ 758 (758)
T KOG1956|consen 719 VTCG-CGTRAVKLLVAKTEPNRGRKFYSCLPE--------KSCNFFAWE 758 (758)
T ss_pred cccC-CcchhhhhhhhccCccCCCCCcccCCC--------CCcceEeeC
Confidence 4688 889889999999999999999999743 459999996
No 27
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=97.14 E-value=0.0044 Score=71.07 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHH--hcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHhcCCceEeeccccCCCCC
Q 006757 159 QFKLQFFHVLQKRWEFLL--CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 236 (632)
Q Consensus 159 ~fk~~f~~~L~~~i~~l~--~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~ 236 (632)
..|.+..+.|..++..+. ....+++|+||||.-.. + ++ + +.|...| +...--.+|+...
T Consensus 652 ~~R~~~AqaL~~~la~~~~~~~d~~~viLGD~N~y~~-----------e-dp----I-~~l~~aG--y~~l~~~~~~~~~ 712 (798)
T COG2374 652 QTRVRAAQALAAFLATNPTGKADADIVILGDFNDYAF-----------E-DP----I-QALEGAG--YMNLAARFHDAGD 712 (798)
T ss_pred hHHHHHHHHHHHHHhhCcccccCCCEEEEeccchhhh-----------c-cH----H-HHHhhcC--chhhhhhccCCCC
Confidence 345666777777766432 23578999999995211 1 11 2 2343343 4554445554433
Q ss_pred CcccccCCCCCCcccCccceeEEEEEeCCCcccccc
Q 006757 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272 (632)
Q Consensus 237 ~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~ 272 (632)
+ |++ .+.. +.--+||+|++..+.+++..
T Consensus 713 ~-YSY---~f~G----~~gtLDhaLas~sl~~~v~~ 740 (798)
T COG2374 713 R-YSY---VFNG----QSGTLDHALASASLAAQVSG 740 (798)
T ss_pred c-eEE---EECC----ccchHhhhhhhhhhhhhccC
Confidence 2 544 2221 12359999999988775443
No 28
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=95.38 E-value=0.24 Score=56.44 Aligned_cols=18 Identities=28% Similarity=0.192 Sum_probs=14.9
Q ss_pred CCCCCCccceEEEEecCC
Q 006757 312 RLEGSDHAPVYMCLGEVP 329 (632)
Q Consensus 312 ~~~~SDH~PV~~~l~~~~ 329 (632)
.+..|||.||++.|....
T Consensus 576 ei~~SDHRPV~A~F~v~V 593 (621)
T PLN03191 576 EIRLSDHRPVSSMFLVEV 593 (621)
T ss_pred CcccCCchhcceEEEEEE
Confidence 357899999999998754
No 29
>KOG4399 consensus C2HC-type Zn-finger protein [General function prediction only]
Probab=94.82 E-value=0.018 Score=58.06 Aligned_cols=50 Identities=26% Similarity=0.508 Sum_probs=39.4
Q ss_pred CCCCCCCCCCccceeeeecCCCCCCCeeeeeccCCCCCCCCCCCCCCceeeccCCCC
Q 006757 574 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 630 (632)
Q Consensus 574 ~~~p~c~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~~f~W~~~~~~ 630 (632)
.++|+|. || ||. +-||+.|+---|.||+|+--+- ...-|+||+|.++...
T Consensus 11 ~~~P~C~-HG-P~L-LF~K~~~~E~~~~F~ACs~~R~----d~kfC~F~~~~d~~~~ 60 (325)
T KOG4399|consen 11 VPAPLCP-HG-PTL-LFVKVTQKEETRRFYACSACRM----DDKFCHFFMFEDEFFD 60 (325)
T ss_pred CCCCcCC-CC-CeE-EEEEccCcchheeeehhhhhhc----chhccchhhhcccccC
Confidence 5789999 87 565 4578899999999999985422 3567999999997544
No 30
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=83.82 E-value=1.6 Score=31.81 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=26.1
Q ss_pred CCCCCCccceeeeecCCCCCCCeeeeeccCCCCCCCCCCCCCCceeeccC
Q 006757 578 LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFS 627 (632)
Q Consensus 578 ~c~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~~f~W~~~ 627 (632)
.|+.|+.+-+.+..++ | .||.|++- -.|.|..|...
T Consensus 3 ~CP~Cg~~lv~r~~k~-g-----~F~~Cs~y--------P~C~~~~~~~~ 38 (39)
T PF01396_consen 3 KCPKCGGPLVLRRGKK-G-----KFLGCSNY--------PECKYTEPLPK 38 (39)
T ss_pred CCCCCCceeEEEECCC-C-----CEEECCCC--------CCcCCeEeCCC
Confidence 5777887766666644 2 99999861 27999999764
No 31
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=78.44 E-value=4.2 Score=44.80 Aligned_cols=17 Identities=41% Similarity=0.473 Sum_probs=14.2
Q ss_pred CCCCCccceEEEEecCC
Q 006757 313 LEGSDHAPVYMCLGEVP 329 (632)
Q Consensus 313 ~~~SDH~PV~~~l~~~~ 329 (632)
++.|||-|||+.+....
T Consensus 312 l~~SDHrPV~a~~~~~i 328 (460)
T COG5411 312 LMISDHRPVYATFRAKI 328 (460)
T ss_pred eeecCCCeEEEEEecce
Confidence 57899999999997643
No 32
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=77.99 E-value=5.8 Score=41.63 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=37.1
Q ss_pred ceEEEEEEEcCCCCCCchH-------hHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCC
Q 006757 138 GHFILFNVYGPRADSEDTV-------RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPA 193 (632)
Q Consensus 138 ~~~~LinVY~P~~~~~~~e-------r~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~ 193 (632)
..|.++|+|+-+....-.. -..+|.+-+......+........++++.||||.-.+
T Consensus 80 t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~~~~~lF~fGDfNyRld 142 (356)
T PTZ00312 80 VVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFISPSDPLFIFGDFNVRLD 142 (356)
T ss_pred EEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccCCCCcEEEeccceeeec
Confidence 4699999999775531111 2234555555555555665667789999999997654
No 33
>PF06373 CART: Cocaine and amphetamine regulated transcript protein (CART); InterPro: IPR009106 The cocaine and amphetamine regulated transcript (CART) is a brain-localised peptide that acts as a satiety factor in appetite regulation. CART was found to inhibit both normal and starvation-induced feeding, and completely blocks the feeding response induced by neuropeptide Y. CART is regulated by leptin in the hypothalamus, and can be transcriptionally induced after cocaine or amphetamine administration []. Posttranslational processing of CART produces an N-terminal CART peptide and a C-terminal CART peptide. The C-terminal CART peptide has been isolated from the hypothalamus, nucleus accumbens, and the anterior pituitary lobe in rats. C-terminal CART is the biologically active part of the molecule affecting food intake. The structure of C-terminal CART consists of a disulphide-bound fold containing a beta-hairpin and two adjacent disulphide bridges [].; GO: 0000186 activation of MAPKK activity, 0001678 cellular glucose homeostasis, 0007186 G-protein coupled receptor protein signaling pathway, 0008343 adult feeding behavior, 0009267 cellular response to starvation, 0032099 negative regulation of appetite, 0005615 extracellular space; PDB: 1HY9_A.
Probab=65.17 E-value=2.6 Score=34.52 Aligned_cols=44 Identities=30% Similarity=0.839 Sum_probs=16.7
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCccceeeeecCCCCCCCeeeeeccCCCCCCCCCCCCCCcee
Q 006757 562 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 623 (632)
Q Consensus 562 ~~~w~~~~~~~~~~~p~c~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~~f~ 623 (632)
...|.+= ...+|+|. -||.|.+| .||-.||. |.=|+| +.||||+
T Consensus 26 ~p~~EKK----~g~vP~Cd-~GE~CAvr----kG~RIGkl---CdC~rG------~~CN~fl 69 (73)
T PF06373_consen 26 IPSWEKK----YGQVPSCD-VGEQCAVR----KGPRIGKL---CDCPRG------TSCNFFL 69 (73)
T ss_dssp ----------------B---SSS-SEEE-----SSSEEE-----B--TT--------B-TTT
T ss_pred CChhhhh----cCcCCCCC-CCchhhhc----cccccccc---cCCCCC------CchhhhH
Confidence 3456652 23589999 99999764 38888884 444434 7899996
No 34
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=57.14 E-value=8.1 Score=44.50 Aligned_cols=35 Identities=34% Similarity=0.416 Sum_probs=25.0
Q ss_pred EEEeecccccccccchhHHHHHHHhcCC-c--EEEEeccc
Q 006757 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDA-D--IICFQETK 39 (632)
Q Consensus 3 IlSwNVnGlr~~~~r~~~l~~~L~~~~a-D--IIcLQETk 39 (632)
|.||||+|-..+..- .|..+|....+ | ||.|||+-
T Consensus 112 v~TWNV~g~~p~~~l--~l~~wl~~~~p~DiyviG~QE~v 149 (621)
T PLN03191 112 IGTWNVAGRLPSEDL--EIEDWLSTEEPADIYIIGFQEVV 149 (621)
T ss_pred EEEeecCCCCCcccC--CHHHhccCCCCCCEEEEeeEEec
Confidence 689999997654332 37788877655 6 56789983
No 35
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=48.87 E-value=17 Score=27.38 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=27.6
Q ss_pred CCCCCCccceeeeecCCCCCCCeeeeeccCC
Q 006757 578 LCKGHKEPCVARVVKKPGPTFGRRFFVCARA 608 (632)
Q Consensus 578 ~c~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~ 608 (632)
.|+-||.+++.|+..+..+..-+.+|.|..+
T Consensus 1 ~CP~Cg~~a~ir~S~~~s~~~~~~Y~qC~N~ 31 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQLSPLTRELYCQCTNP 31 (47)
T ss_pred CcCCCCCeeEEEEchhhCcceEEEEEEECCC
Confidence 4788889999999999999999999999653
No 36
>PF09507 CDC27: DNA polymerase subunit Cdc27; InterPro: IPR019038 This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterised by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. ; GO: 0006260 DNA replication, 0005634 nucleus; PDB: 1U76_B 3E0J_B.
Probab=46.97 E-value=6.9 Score=43.13 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=7.7
Q ss_pred cccCccccccccccC
Q 006757 464 SQLGQLSLKSFFHKR 478 (632)
Q Consensus 464 ~~~~q~~l~~fF~~~ 478 (632)
...+|+||||||+++
T Consensus 416 ~k~kQ~simsFF~KK 430 (430)
T PF09507_consen 416 KKKKQGSIMSFFKKK 430 (430)
T ss_dssp ---EE--GGGTSB--
T ss_pred CCCCCcchhhhccCC
Confidence 456899999999863
No 37
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=35.16 E-value=51 Score=28.79 Aligned_cols=44 Identities=25% Similarity=0.618 Sum_probs=32.3
Q ss_pred CCCCCCCCccceeeeecCCCCCCCeeeeeccC--CCCCCCCCCCCCCceeec
Q 006757 576 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR--AEGPASNPEANCGYFKWA 625 (632)
Q Consensus 576 ~p~c~~~~~~~~~~~v~k~g~n~Gr~f~~C~~--~~g~~~~~~~~c~~f~W~ 625 (632)
+.-|. |+..-|..|. ..-...|..||.|+. ..| |..+|+|-.|-
T Consensus 20 ~ie~d-cnakvvvats-~dpvts~klyfscpyeisdg----~g~~~gfkrww 65 (122)
T PF05325_consen 20 PIECD-CNAKVVVATS-RDPVTSGKLYFSCPYEISDG----PGRGCGFKRWW 65 (122)
T ss_pred ceecc-CCceEEEEec-cCCcccceeeecCccccccC----CCCCccceeEE
Confidence 34688 8877666665 445678999999976 334 46789999984
Done!