Query 006757
Match_columns 632
No_of_seqs 375 out of 2176
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 08:09:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 3.6E-41 1.2E-45 343.3 26.0 250 1-328 4-258 (265)
2 2j63_A AP-endonuclease; base e 100.0 9.8E-40 3.4E-44 360.4 25.7 275 1-327 150-466 (467)
3 2voa_A AF_EXO, XTHA, exodeoxyr 100.0 8.3E-36 2.8E-40 300.6 23.7 248 1-326 2-256 (257)
4 2jc5_A Exodeoxyribonuclease; h 100.0 1.2E-35 4.1E-40 299.0 23.0 251 1-328 2-257 (259)
5 1hd7_A DNA-(apurinic or apyrim 100.0 1.9E-35 6.6E-40 310.3 22.6 249 1-326 62-317 (318)
6 2jc4_A Exodeoxyribonuclease II 100.0 6.2E-35 2.1E-39 293.3 24.4 250 1-326 1-255 (256)
7 2o3h_A DNA-(apurinic or apyrim 100.0 5.2E-35 1.8E-39 300.3 24.2 249 1-326 29-284 (285)
8 1ako_A Exonuclease III; AP-end 100.0 4.6E-34 1.6E-38 288.9 22.2 251 1-326 1-267 (268)
9 1vyb_A ORF2 contains A reverse 100.0 7.5E-33 2.6E-37 274.7 22.1 227 1-326 8-238 (238)
10 2ei9_A Non-LTR retrotransposon 100.0 5E-30 1.7E-34 259.7 16.4 212 1-329 8-221 (240)
11 1wdu_A TRAS1 ORF2P; four-layer 100.0 1.2E-27 4.2E-32 240.7 20.2 221 1-327 20-243 (245)
12 4gew_A 5'-tyrosyl-DNA phosphod 99.9 1.4E-26 4.8E-31 248.1 23.1 230 1-326 120-361 (362)
13 4fva_A 5'-tyrosyl-DNA phosphod 99.9 5E-25 1.7E-29 219.7 23.3 231 1-326 14-255 (256)
14 4f1h_A Tyrosyl-DNA phosphodies 99.9 2.1E-23 7.1E-28 204.7 19.8 202 1-266 4-214 (250)
15 3teb_A Endonuclease/exonucleas 99.9 1.1E-23 3.8E-28 212.4 18.3 239 1-326 4-265 (266)
16 3l1w_A Uncharacterized protein 99.9 7.3E-23 2.5E-27 206.4 22.7 239 1-328 1-252 (257)
17 4gz1_A Tyrosyl-DNA phosphodies 99.9 2.1E-23 7.3E-28 207.5 17.2 235 1-327 10-254 (256)
18 3g6s_A Putative endonuclease/e 99.9 5.2E-22 1.8E-26 201.5 23.4 243 1-328 4-261 (267)
19 1zwx_A SMCL, sphingomyelinase- 99.9 4E-21 1.4E-25 198.1 18.2 212 1-266 11-256 (301)
20 3mpr_A Putative endonuclease/e 99.8 1E-19 3.5E-24 188.5 21.6 259 1-329 7-291 (298)
21 2ddr_A Sphingomyelin phosphodi 99.8 7E-20 2.4E-24 189.0 17.8 216 1-267 10-262 (306)
22 3i41_A Beta-hemolysin; beta to 99.8 5.1E-19 1.8E-23 185.5 16.2 210 1-267 30-275 (317)
23 3ngq_A CCR4-NOT transcription 99.7 1E-16 3.5E-21 173.3 19.8 81 1-82 32-133 (398)
24 4b8c_D Glucose-repressible alc 99.6 6.2E-16 2.1E-20 179.8 3.9 81 1-81 395-495 (727)
25 2a40_B Deoxyribonuclease-1; WA 99.5 9.3E-14 3.2E-18 140.8 13.6 78 1-82 1-87 (260)
26 2f1n_A CDT B, cytolethal diste 99.5 1.8E-13 6.1E-18 137.7 14.2 150 1-194 16-192 (262)
27 1sr4_B CDT B, cytolethal diste 99.4 1.8E-12 6.3E-17 131.5 17.4 40 1-40 5-47 (261)
28 1i9z_A Synaptojanin, phosphati 99.2 1.8E-10 6.1E-15 122.3 19.0 34 1-38 27-65 (347)
29 2imq_X Salivary nitrophorin; f 99.2 2.2E-11 7.4E-16 125.8 9.8 37 1-41 9-50 (282)
30 2xsw_A 72 kDa inositol polypho 99.0 3.7E-09 1.3E-13 112.5 16.4 72 1-82 28-107 (357)
31 3mtc_A Type II inositol-1,4,5- 98.8 2E-07 6.8E-12 97.1 19.1 37 1-41 10-50 (313)
32 4a9c_A Phosphatidylinositol-3, 98.4 9.2E-06 3.2E-10 84.7 19.1 70 2-82 11-101 (316)
33 1hy9_A Cocaine and amphetamine 76.3 1.3 4.6E-05 31.0 2.0 35 575-623 3-37 (41)
34 2zvk_U DNA polymerase ETA, pro 29.1 13 0.00043 23.4 0.1 12 467-478 8-19 (26)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=100.00 E-value=3.6e-41 Score=343.29 Aligned_cols=250 Identities=34% Similarity=0.594 Sum_probs=205.1
Q ss_pred CEEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEEEe
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl~R 80 (632)
|||+||||||++...++ .+.++|+..+|||||||||+.....+...+....||..++... +++||.|||||+|
T Consensus 4 l~i~s~Nv~g~~~~~~~--~l~~~i~~~~~DIv~LQEt~~~~~~~~~~~~~~~gy~~~~~~~-----~~~~~~Gvail~k 76 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRK--GFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPA-----ERKGYSGVAMYTK 76 (265)
T ss_dssp EEEEEEECSCHHHHHHH--THHHHHHHHCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEECB-----SSTTSCCEEEEES
T ss_pred cEEEEEEcCCchhhhhh--hHHHHHHhcCCCEEEEEeccccccccChhhhcccCCcEEEccC-----CCCCcCEEEEEEe
Confidence 69999999999987775 3999999999999999999988777654444468999887643 3467889999999
Q ss_pred ecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEeeceEEEEEEEcCCCCCCchHhHHH
Q 006757 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (632)
Q Consensus 81 ~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~~~~~LinVY~P~~~~~~~er~~f 160 (632)
.+ ++....++. ....|.+||++.+++..++|+|||+|+... ..+|..+
T Consensus 77 ~~----------~~~~~~~~~---------------------~~~~d~~gr~i~~~~~~~~i~~vy~p~~~~-~~~~~~~ 124 (265)
T 3g91_A 77 VP----------PSSLREGFG---------------------VERFDTEGRIQIADFDDFLLYNIYFPNGAM-SEERLKY 124 (265)
T ss_dssp SC----------CSEEECCCS---------------------CHHHHSBSCEEEEECSSCEEEEEECCCCTT-CHHHHHH
T ss_pred cC----------hHHhccCCC---------------------CcccCCcCCEEEEEeCCEEEEEEEecCCCC-CchhHHH
Confidence 83 333333331 023578999999999999999999999875 4689999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCC-----CCCchhHHHHHHHHHHHhcCCceEeeccccCCCC
Q 006757 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235 (632)
Q Consensus 161 k~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~-----~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~ 235 (632)
|+.|++.|..++..+...+.++||+||||+.+.++|..... .++...+ +.+|+.++ +.| |+|+||.+||..
T Consensus 125 r~~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~g--l~D~~r~~~p~~ 200 (265)
T 3g91_A 125 KLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVE-RAWIDKFI-ENG--YVDTFRMFNSDP 200 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGGGTTSTTSCHHH-HHHHHHHH-HTT--EEETHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEECccccCCchhhccCHhhcCCCCccCHHH-HHHHHHHH-hcC--cEEeeHhhCCCC
Confidence 99999999999998876689999999999999988876542 3455544 78899888 665 999999999997
Q ss_pred CCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCCCCCCCCC
Q 006757 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 315 (632)
Q Consensus 236 ~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~~~ 315 (632)
+ .||||+++.+++..|.+.||||||++..+.. .+.++.|.+. ..+
T Consensus 201 ~-~yT~~~~~~~~~~~~~~~rID~il~s~~~~~-------------~~~~~~i~~~---------------------~~~ 245 (265)
T 3g91_A 201 G-QYTWWSYRTRARERNVGWRLDYFFVNEEFKG-------------KVKRSWILSD---------------------VMG 245 (265)
T ss_dssp C-CCSBCCSSTTTTTTTCCBCCEEEEEEGGGGG-------------GEEEEEECTT---------------------CCS
T ss_pred C-CCCCcCCCCCccccCceEEEEEEEECHHHHh-------------hhcEEEEeCC---------------------CCC
Confidence 6 6999999999988899999999999988644 6788888763 368
Q ss_pred CCccceEEEEecC
Q 006757 316 SDHAPVYMCLGEV 328 (632)
Q Consensus 316 SDH~PV~~~l~~~ 328 (632)
|||+||+++|...
T Consensus 246 SDH~Pv~~~~~~~ 258 (265)
T 3g91_A 246 SDHCPIGLEIELL 258 (265)
T ss_dssp SSBCCEEEEEECC
T ss_pred CCcceEEEEhhhh
Confidence 9999999999863
No 2
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=100.00 E-value=9.8e-40 Score=360.41 Aligned_cols=275 Identities=27% Similarity=0.394 Sum_probs=198.5
Q ss_pred CEEEEeecccccccccch-hHHHHHHHhcCCcEEEEeccccccccchhh--hHhhcCCeEEeeccCCCCCCCCCcceEEE
Q 006757 1 MKIVTYNVNGLRQRVSQF-GSLRKLLDSFDADIICFQETKLRRQELKSD--LVMADGYESFFSCTRTSDKGRTGYSGVAT 77 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~-~~l~~~L~~~~aDIIcLQETk~~~~~l~~~--l~~~~GY~~~fs~~~~~~~gr~GysGVAI 77 (632)
|||+||||||++...++. ..|.++|..++|||||||||+...+.+... +....||..||..+ .++.||.||||
T Consensus 150 LKI~TwNVnGl~~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~~~~la~~~GY~~~~~~~----~~~~g~~GVAI 225 (467)
T 2j63_A 150 YKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPC----AFKRGYSGTRT 225 (467)
T ss_dssp EEEEEEECSCHHHHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECC----SSSTTSCCEEE
T ss_pred eEEEEEEcCCCcccccccHHHHHHHHHHcCCCEEEEEecccchhccchHHHHhhcCCceEEEecc----cCCCCcceEEE
Confidence 799999999998776542 359999999999999999999876655421 22357998777643 24568899999
Q ss_pred EEeecCCCCCccccccee--eeecccCcccccCcccccCccccchhhhcccCCCCcEEEEee----------ceEEEEEE
Q 006757 78 FCRVKSPFSSTEVALPVA--AEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----------GHFILFNV 145 (632)
Q Consensus 78 l~R~~~~f~~~~~~~Pi~--~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~----------~~~~LinV 145 (632)
|+|.++. +.++. ...++............+....+ ....|.+||+|.+++ ..|.|+|+
T Consensus 226 lsR~pi~------~~~l~~~~~~~~~~p~~~~~~~~~gs~~~~----~~~~D~egR~I~a~~~~~g~~~~~~~~~~vinv 295 (467)
T 2j63_A 226 YMKNSTT------VKGLHARCTRGFALPSEPQADAAAGSRVLV----EGAGDEEGRVLTTFLSPDPDSASSSSRIALVNT 295 (467)
T ss_dssp EEECCCC------CCTSCCEEEESSCCCCC-----------CC----CCCCCTTCCEEEEEECSSCCC----CCEEEEEE
T ss_pred EEeCCcc------ccccceeeeecccccccccccccccccccc----ccccCCCCcEEEEEEEeCCcccccCceEEEEEE
Confidence 9998530 01111 22333211000000000000000 023578999998887 67999999
Q ss_pred EcCCCCCCchHhHHHHHH-HHHHHHHHHHHHHh------------------cCCcEEEeCCCCCCCCccccCCC------
Q 006757 146 YGPRADSEDTVRIQFKLQ-FFHVLQKRWEFLLC------------------QGRRIFVVGDLNIAPAAIDRCDA------ 200 (632)
Q Consensus 146 Y~P~~~~~~~er~~fk~~-f~~~L~~~i~~l~~------------------~g~~VII~GDFN~~~~~iD~~~~------ 200 (632)
|+|+... ..+|..+|++ |++.|..++..+.. .+.+|||+||||+++..+|++++
T Consensus 296 YlP~~~~-~~~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p~~~D~~~~~~~~~~ 374 (467)
T 2j63_A 296 YVANSGM-GLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKSM 374 (467)
T ss_dssp ECCCCCT-TSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCCCSCHHHH
T ss_pred ECCCCCc-chHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEEeccccCCCchhhhccccchhhc
Confidence 9999764 3567888874 66778777777642 35799999999999998888651
Q ss_pred --CCCCchhHHHHHHHHHHHhcCCceEeeccccCCCCCCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccc
Q 006757 201 --GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 278 (632)
Q Consensus 201 --~~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~ 278 (632)
..+|...+ |.||..+|...+ |+|+||.+||...+.||||+++.++++.|.+.||||||++..+..
T Consensus 375 ~~~~gf~~~e-r~~~~~lL~~~g--L~DafR~~~p~~~~~yTw~s~r~~~~~~n~g~RIDyIlvS~~l~~---------- 441 (467)
T 2j63_A 375 QECSGFAPEE-RMSFRETMQRTN--SVDIFRQLYPQAGPVYSFWSQRINGRPRNLGWRLDYFVVSSRLAS---------- 441 (467)
T ss_dssp TTSTTSCHHH-HHHHHHHHHHTT--EEEHHHHHCTTBCSCCSBCCTTTTTTTTTCCBCCEEEEEEGGGGG----------
T ss_pred ccccccCHHH-HHHHHHHHhhCC--CEEehHhhCCCCCCCccccCCCCCcccCCCCceeEEEEEcHHHHc----------
Confidence 24566655 889999987665 999999999976667999999998888899999999999987643
Q ss_pred cccceeeeEeecccccCCCCCCCCccccCCCCCCCCCCCccceEEEEec
Q 006757 279 VTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 327 (632)
Q Consensus 279 ~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~~~SDH~PV~~~l~~ 327 (632)
.|.+|.|+.. ..+||||||+++|..
T Consensus 442 ---~v~~~~I~~~---------------------~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 442 ---YVVDCFPMPT---------------------VMGSDHCPFQMWMRH 466 (467)
T ss_dssp ---GEEEEEECTT---------------------CCSSSBCCEEEEEEC
T ss_pred ---ceeEEEECCC---------------------CCCCCcccEEEEEEc
Confidence 5788888753 368999999999974
No 3
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=100.00 E-value=8.3e-36 Score=300.64 Aligned_cols=248 Identities=29% Similarity=0.399 Sum_probs=185.3
Q ss_pred CEEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEEEe
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl~R 80 (632)
|||+||||+|++.+.+ .+.++|+.++|||||||||+.....+....+...||..++.. ..|+.|||||+|
T Consensus 2 lrv~t~Nv~g~~~~~~---~i~~~i~~~~~Dii~lQE~~~~~~~~~~~~~~~~gy~~~~~~-------~~~~~G~ailsr 71 (257)
T 2voa_A 2 LKIATFNVNSIRSRLH---IVIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSG-------SKGRNGVAIASL 71 (257)
T ss_dssp EEEEEEECSCGGGTHH---HHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEEE-------ETTEEEEEEEES
T ss_pred eEEEEEecCChHHHHH---HHHHHHhhcCCCEEEEEEeecchhhcCHHHhhhCCCcEEEcC-------CCCccEEEEEEc
Confidence 6999999999987655 399999999999999999987655444333456799877642 246679999999
Q ss_pred ecCCCCCccccccee-eeecccCcccccCcccccCccccchhhhcccCCCCcEEEEeeceEEEEEEEcCCCCCCchHhHH
Q 006757 81 VKSPFSSTEVALPVA-AEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (632)
Q Consensus 81 ~~~~f~~~~~~~Pi~-~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~~~~~LinVY~P~~~~~~~er~~ 159 (632)
.+ +. ...++.+ ...| ++|++.++++.+.|+|+|+|+....+.++..
T Consensus 72 ~~-----------~~~~~~~~~~---------------------~~~~-~~r~l~~~~~~~~v~~~h~p~~~~~~~~~~~ 118 (257)
T 2voa_A 72 EE-----------PEDVSFGLDS---------------------EPKD-EDRLIRAKIAGIDVINTYVPQGFKIDSEKYQ 118 (257)
T ss_dssp SC-----------CEEEEESCSS---------------------SSCC-GGGEEEEEETTEEEEEEECCCCSCTTSHHHH
T ss_pred cC-----------hHHheecCCC---------------------Cccc-cCcEEEEEECCEEEEEEEeCCCCCCCcHHHH
Confidence 83 32 2222210 0134 7899888888999999999997643346777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCC-----CCCchhHHHHHHHHHHHhcCCceEeeccccCCC
Q 006757 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 234 (632)
Q Consensus 160 fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~-----~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~ 234 (632)
+|.+|++.|..++..+...+.++||+||||+.+..+|.+... .++...+ +.+|..++ +. +|.|+||..+|.
T Consensus 119 ~r~~~~~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~--~l~D~~~~~~p~ 194 (257)
T 2voa_A 119 YKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHEDA-RRAYKKIL-EL--GFVDVLRKIHPN 194 (257)
T ss_dssp HHHHHHHHHHHHHHHHCCTTSCEEEEEECSCCCSGGGBSCGGGCTTSTTTCHHH-HHHHHHHH-TT--TCEEHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeeCCCCCchhhccChhHhCCCCCCCHHH-HHHHHHHH-Hc--CcEeeehhhCCC
Confidence 788899988888877655678999999999998888865431 2344333 67788777 44 499999999998
Q ss_pred CCCcccccCC-CCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCCCCCCC
Q 006757 235 RREAYTCWPS-NTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 313 (632)
Q Consensus 235 ~~~~yT~~s~-~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~ 313 (632)
.. .||||+. +.+++..+.+.||||||+++.+.. .+.++.|....+. ..
T Consensus 195 ~~-~~T~~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~v~~~~~~-----------------~~ 243 (257)
T 2voa_A 195 ER-IYTFYDYRVKGAIERGLGWRGDAILATPPLAE-------------RCVDCYADIKPRL-----------------AE 243 (257)
T ss_dssp CC-CCSBCCTTSTTTTTTTCCBCCEEEEECHHHHT-------------TEEEEEECCHHHH-----------------SS
T ss_pred CC-CcceeccccCCceecCceEEEEEEEECHHHHh-------------hhheeEeehhhcc-----------------CC
Confidence 64 5999998 776666678899999999986532 4677777653110 13
Q ss_pred CCCCccceEEEEe
Q 006757 314 EGSDHAPVYMCLG 326 (632)
Q Consensus 314 ~~SDH~PV~~~l~ 326 (632)
.+|||+||+++|.
T Consensus 244 ~~SDH~pv~~~l~ 256 (257)
T 2voa_A 244 KPSDHLPLVAVFD 256 (257)
T ss_dssp SCCSBCCEEEEEC
T ss_pred CCCCccCEEEEEe
Confidence 6899999999985
No 4
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=100.00 E-value=1.2e-35 Score=299.01 Aligned_cols=251 Identities=29% Similarity=0.485 Sum_probs=191.0
Q ss_pred CEEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEEEe
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl~R 80 (632)
|||+||||+|++...++ .+.++|+..+|||||||||+.....+...++...||..++... +..++.|||||+|
T Consensus 2 l~v~t~Ni~~~~~~~~~--~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~-----~~~~~~G~ailsr 74 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKK--GFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCA-----EKRGYSGVAVYSK 74 (259)
T ss_dssp EEEEEEECSSHHHHHHT--THHHHHHHTTCSEEEEECCCCCGGGCCHHHHSGGGCEEEEECC-----SSTTCCCEEEEES
T ss_pred cEEEEEeeccHHHHHHh--HHHHHHHhcCCCEEEEEEecchhhccChhhccccCCeEEEecc-----CCCCcceEEEEEe
Confidence 69999999999876654 3999999999999999999877655544444567998877542 2346679999999
Q ss_pred ecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEeeceEEEEEEEcCCCCCCchHhHHH
Q 006757 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (632)
Q Consensus 81 ~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~~~~~LinVY~P~~~~~~~er~~f 160 (632)
.++ .....++. ....|.+||++.++++.+.|+|+|+|+... ..+|..+
T Consensus 75 ~~~----------~~~~~~~~---------------------~~~~~~~~r~~~~~~~~~~v~~~h~~~~~~-~~~r~~~ 122 (259)
T 2jc5_A 75 RKP----------DNVQIGMG---------------------IEEFDREGRFVRCDFGRLSVISLYLPSGSS-AEERQQV 122 (259)
T ss_dssp SCC----------SEEEESCS---------------------CHHHHTTCCEEEEEETTEEEEEEECCCCTT-CHHHHHH
T ss_pred cCc----------eeEEeCCC---------------------CCccCCCCeEEEEEcCCEEEEEEeccCCCC-CcHHHHH
Confidence 842 22222221 012456899999999999999999999875 3578888
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCC-----CCCchhHHHHHHHHHHHhcCCceEeeccccCCCC
Q 006757 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235 (632)
Q Consensus 161 k~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~-----~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~ 235 (632)
+..|++.|..+++.+...+.++||+||||..+..+|.+... .++.+.+ +.+|..++...| |.|+||..+|..
T Consensus 123 ~~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~--l~d~~~~~~~~~ 199 (259)
T 2jc5_A 123 KYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEE-REWIGKVIHKLG--WTDMWRTLYPDV 199 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEEECCCCCSGGGBSCSTTCTTSTTSCHHH-HHHHHHHHHTTC--CEEHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCchhhccChhhcCCCCCcCHHH-HHHHHHHhccCC--cEEeeHhhCCCC
Confidence 88899999888887655689999999999998887765432 2333333 677888886665 999999999976
Q ss_pred CCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCCCCCCCCC
Q 006757 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 315 (632)
Q Consensus 236 ~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~~~ 315 (632)
.+ ||||+.+...+..+.+.||||||+++.+.. .+.++.|... ..+
T Consensus 200 ~~-~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~v~~~---------------------~~~ 244 (259)
T 2jc5_A 200 PG-YTWWSNRGQAYAKDVGWRIDYQMVTPELAA-------------KAVSAHVYKD---------------------EKF 244 (259)
T ss_dssp CC-CCEESCSSHHHHTTCEECCEEEEECHHHHT-------------TEEEEEECCS---------------------SCC
T ss_pred CC-ccEECCcCCCccCCCeeEEEEEEECHHHHh-------------HHhheeecCC---------------------CCC
Confidence 66 999998766555677899999999976532 4677777642 368
Q ss_pred CCccceEEEEecC
Q 006757 316 SDHAPVYMCLGEV 328 (632)
Q Consensus 316 SDH~PV~~~l~~~ 328 (632)
|||+||+++|...
T Consensus 245 SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 245 SDHAPLVVEYDYA 257 (259)
T ss_dssp SSBCCEEEEESCC
T ss_pred CCcccEEEEEecc
Confidence 9999999999753
No 5
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=100.00 E-value=1.9e-35 Score=310.30 Aligned_cols=249 Identities=29% Similarity=0.479 Sum_probs=180.1
Q ss_pred CEEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCC-eEEeeccCCCCCCCCCcceEEEEE
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFFSCTRTSDKGRTGYSGVATFC 79 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY-~~~fs~~~~~~~gr~GysGVAIl~ 79 (632)
|||+||||+|++...++ .+.++|..++|||||||||+.....+...++...|| ..|+... ....|+.|||||+
T Consensus 62 lrv~t~Nv~g~~~~~~~--~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~----~~~~g~~Gvails 135 (318)
T 1hd7_A 62 LKICSWNVDGLRAWIKK--KGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAP----SDKEGYSGVGLLS 135 (318)
T ss_dssp EEEEEEECSSHHHHHHT--THHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC---------CCCEEEEE
T ss_pred eEEEEEecCcchhhhhh--hHHHHHHhhCCCEEEEEEccCchhhccHHHHhcCCCceEEEecC----CCCCccceEEEEE
Confidence 69999999999876554 399999999999999999987655444334446799 6666542 1235777999999
Q ss_pred eecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEeeceEEEEEEEcCCCCCCchHhHH
Q 006757 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (632)
Q Consensus 80 R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~~~~~LinVY~P~~~~~~~er~~ 159 (632)
|.+ ++....++. ....|.+||++.+++..|.|+|+|+|+... ..++..
T Consensus 136 r~~----------~~~~~~~~~---------------------~~~~~~~~r~l~~~~~~~~v~~vh~p~~~~-~~~~~~ 183 (318)
T 1hd7_A 136 RQC----------PLKVSYGIG---------------------DEEHDQEGRVIVAEFDSFVLVTAYVPNAGR-GLVRLE 183 (318)
T ss_dssp SSC----------CSEEEESCS---------------------CGGGSSSSCEEEEECSSCEEEEEECCCCCG-GGTTHH
T ss_pred cCC----------ceeEEecCC---------------------CcccCCCCcEEEEEcCCEEEEEEEcCCCCC-ccccHH
Confidence 984 233333321 012467899999999999999999998764 245677
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCC-----CCCCchhHHHHHH-HHHHHhcCCceEeeccccCC
Q 006757 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWF-RSMLVESGGSFFDVFRSKHP 233 (632)
Q Consensus 160 fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~-----~~~~~~~~~r~~l-~~lL~~~g~~L~D~~R~~hP 233 (632)
+|..|++.|..++..+... .++||+||||+.+..+|++.. ..+|...+ +.+| ..++.. | |.|+||.++|
T Consensus 184 ~r~~~~~~l~~~l~~~~~~-~pvIl~GDFN~~~~~~D~~~~~~~~~~~g~~~~~-~~~~~~~ll~~-~--l~D~~r~~~p 258 (318)
T 1hd7_A 184 YRQRWDEAFRKFLKGLASR-KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELLQAV-P--LADSFRHLYP 258 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHH-HHHHHHHHHHT-T--CEEHHHHHCT
T ss_pred HHHHHHHHHHHHHHhcccC-CCEEEEeeCCCCChhhhccChhhcCCCCCcCHHH-HHHHHHHHhhC-C--CEEeehhhCC
Confidence 8888999888888776433 789999999999888886431 23454444 6788 877754 4 9999999999
Q ss_pred CCCCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCCCCCCC
Q 006757 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 313 (632)
Q Consensus 234 ~~~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~ 313 (632)
...+.||||+.+..++..+.+.||||||++..+.. .|.++.|... .
T Consensus 259 ~~~~~~T~~~~~~~~~~~~~~~rID~il~s~~~~~-------------~v~~~~v~~~---------------------~ 304 (318)
T 1hd7_A 259 NTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP-------------ALCDSKIRSK---------------------A 304 (318)
T ss_dssp TCTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGGG-------------GEEEEEECTT---------------------C
T ss_pred CCCCCcceECCcCCCcccCCceEEEEEEECHHHHh-------------hhhheEeecc---------------------C
Confidence 86545999998876666678899999999987532 4677888652 2
Q ss_pred CCCCccceEEEEe
Q 006757 314 EGSDHAPVYMCLG 326 (632)
Q Consensus 314 ~~SDH~PV~~~l~ 326 (632)
.+|||+||+++|.
T Consensus 305 ~~SDH~Pv~~~l~ 317 (318)
T 1hd7_A 305 LGSDHCPITLYLA 317 (318)
T ss_dssp CSSSBCCEEEEEC
T ss_pred CCCCccCEEEEec
Confidence 5799999999985
No 6
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=100.00 E-value=6.2e-35 Score=293.31 Aligned_cols=250 Identities=28% Similarity=0.437 Sum_probs=186.8
Q ss_pred CEEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEEEe
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl~R 80 (632)
|||+||||+|++.+.. .+.++|+..+|||||||||+.....+...++...||..++.. +.++.|||||+|
T Consensus 1 lrv~t~Nv~~~~~~~~---~i~~~i~~~~~DIv~LQE~~~~~~~~~~~~~~~~gy~~~~~~-------~~~~~G~ailsr 70 (256)
T 2jc4_A 1 MKITTWNVNSLNVRLP---QVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSG-------QKTYNGVAIVSR 70 (256)
T ss_dssp CEEEEEECSCHHHHHH---HHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEEC-------CSSSCCEEEEES
T ss_pred CEEEEEEcCCcHHHHH---HHHHHHHhcCCCEEEEEeeccchhcCCHhHHhhcCCeEEECC-------CCcceEEEEEEC
Confidence 7999999999987654 499999999999999999987665443334456799877642 245679999999
Q ss_pred ecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEeeceEEEEEEEcCCCCCCchHhHHH
Q 006757 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (632)
Q Consensus 81 ~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~~~~~LinVY~P~~~~~~~er~~f 160 (632)
.++ .....++.+ ...+.++|++.++++.+.|+|+|+|+......++..+
T Consensus 71 ~~~----------~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~ 119 (256)
T 2jc4_A 71 SVP----------QDVHFGLPA---------------------LPDDPQRRVIAATVSGVRVINVYCVNGEALDSPKFKY 119 (256)
T ss_dssp SCC----------EEEEESCTT---------------------STTCCSCCEEEEEETTEEEEEEECCCCCSTTSHHHHH
T ss_pred CCh----------HHheecCCC---------------------CccCCcCcEEEEEeCCEEEEEEEecCCCCCCcHhHHH
Confidence 831 112222210 0135688999888889999999999987544567777
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCC-----CCCCchhHHHHHHHHHHHhcCCceEeeccccCCCC
Q 006757 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235 (632)
Q Consensus 161 k~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~-----~~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~ 235 (632)
|..+++.|..+++.+...+.++||+||||..+...|++.. ...+.+.+ +.+++.++ +. +|.|+||..+|..
T Consensus 120 r~~~~~~l~~~~~~~~~~~~~~il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~--~l~D~~~~~~~~~ 195 (256)
T 2jc4_A 120 KEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVE-RQWFQNLL-DL--GLTDSLRQVHPEG 195 (256)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGGGTTCTTSCHHH-HHHHHHHH-TT--TCEEHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCchhhccChhHhCCCCCcCHHH-HHHHHHHH-hc--CcEEhhhhhCCCC
Confidence 8889999998888776678899999999998887775432 23344433 66787776 34 4999999999975
Q ss_pred CCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCCCCCCCCC
Q 006757 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEG 315 (632)
Q Consensus 236 ~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~~~ 315 (632)
. .||||+.+.+.++.+.+.||||||+++.+.. .+.++.|....+. ...+
T Consensus 196 ~-~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~v~~~~~~-----------------~~~~ 244 (256)
T 2jc4_A 196 A-FYTWFDYRGAMFQRKLGLRIDHILVSPAMAA-------------ALKDVRVDLETRA-----------------LERP 244 (256)
T ss_dssp C-CCCBCCTTTTHHHHTCCBCCEEEEECHHHHT-------------TEEEEEECHHHHT-----------------SSSC
T ss_pred C-ceeeEcCCCCccccCcEEEEEEEEECHHHHh-------------heeEEEEEhhccc-----------------CCCC
Confidence 4 5999998877665677899999999986532 4777888763110 1368
Q ss_pred CCccceEEEEe
Q 006757 316 SDHAPVYMCLG 326 (632)
Q Consensus 316 SDH~PV~~~l~ 326 (632)
|||+||+++|.
T Consensus 245 SDH~pv~~~l~ 255 (256)
T 2jc4_A 245 SDHAPVTAEFD 255 (256)
T ss_dssp CSBCCEEEEEC
T ss_pred CCcccEEEEec
Confidence 99999999985
No 7
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=100.00 E-value=5.2e-35 Score=300.32 Aligned_cols=249 Identities=29% Similarity=0.474 Sum_probs=186.8
Q ss_pred CEEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCC-eEEeeccCCCCCCCCCcceEEEEE
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFFSCTRTSDKGRTGYSGVATFC 79 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY-~~~fs~~~~~~~gr~GysGVAIl~ 79 (632)
|||+||||+|++...++ .+.++|+..+|||||||||+.....+...++...|| ..|+... ....|+.|||||+
T Consensus 29 l~v~t~Ni~~~~~~~~~--~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~----~~~~g~~Gvails 102 (285)
T 2o3h_A 29 LKIASWNVDGLRAWIKK--KGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAP----SDKEGYSGVGLLS 102 (285)
T ss_dssp EEEEEEECSSHHHHHHT--THHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECB----C--CCSCCEEEEE
T ss_pred eEEEEEecccChhhhhh--hHHHHHHhcCCCEEEEEEeecchhhccHHHHhccCCcEEEEecc----cCCcccceEEEEE
Confidence 69999999999876655 399999999999999999988655554334446789 6666543 1235667999999
Q ss_pred eecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEeeceEEEEEEEcCCCCCCchHhHH
Q 006757 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (632)
Q Consensus 80 R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~~~~~LinVY~P~~~~~~~er~~ 159 (632)
|.+ ++....++. ....+.+||++.++++.|.|+|+|+|+... ..++..
T Consensus 103 r~~----------~~~~~~~~~---------------------~~~~~~~~r~l~~~~~~~~v~~~h~p~~~~-~~~~~~ 150 (285)
T 2o3h_A 103 RQC----------PLKVSYGIG---------------------DEEHDQEGRVIVAEFDSFVLVTAYVPNAGR-GLVRLE 150 (285)
T ss_dssp SSC----------CSEEEESCS---------------------CGGGSSBCCEEEEECSSCEEEEEECCCCCG-GGTTHH
T ss_pred ccC----------hHHeeeccC---------------------CcccCCCCcEEEEEeCCEEEEEEEcCCCCC-cchhHH
Confidence 984 233333321 012467899998898999999999998764 245777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCC-----CCCchhHHHHHH-HHHHHhcCCceEeeccccCC
Q 006757 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWF-RSMLVESGGSFFDVFRSKHP 233 (632)
Q Consensus 160 fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~-----~~~~~~~~r~~l-~~lL~~~g~~L~D~~R~~hP 233 (632)
+|.+|++.|..+++.+. ...++||+||||+.+..+|.+... .++...+ +.+| ..++.. + |.|+||.++|
T Consensus 151 ~r~~~~~~l~~~l~~~~-~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~g~~~~~-~~~~~~~~l~~-~--l~D~~~~~~~ 225 (285)
T 2o3h_A 151 YRQRWDEAFRKFLKGLA-SRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELLQAV-P--LADSFRHLYP 225 (285)
T ss_dssp HHHHHHHHHHHHHHHHH-TTSCEEEEEECSCCCSGGGBSCTTTCTTSTTSCHHH-HHHHHHHHHHT-T--CEEHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhc-cCCCEEEEEECCCCCchhhccChhhcCCCCCcCHHH-HHHHHHHHhcC-C--CEEEEEecCC
Confidence 88889998888888763 358999999999998888865332 2344333 6788 888864 4 9999999999
Q ss_pred CCCCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCCCCCCC
Q 006757 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRL 313 (632)
Q Consensus 234 ~~~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~ 313 (632)
...+.||||+.+...+..+.+.||||||++..+.. .+.++.|... .
T Consensus 226 ~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~v~~~~v~~~---------------------~ 271 (285)
T 2o3h_A 226 NTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP-------------ALCDSKIRSK---------------------A 271 (285)
T ss_dssp TCCSCCSBCCSSTTHHHHTCCBCCEEEEECGGGGG-------------GEEEEEECTT---------------------C
T ss_pred CCCCcEeEecCcCCccccCceeEEEEEEECHHHHh-------------hhhheEeecc---------------------C
Confidence 76545999998876655677899999999987532 4777887652 2
Q ss_pred CCCCccceEEEEe
Q 006757 314 EGSDHAPVYMCLG 326 (632)
Q Consensus 314 ~~SDH~PV~~~l~ 326 (632)
.+|||+||+++|.
T Consensus 272 ~~SDH~pv~~~l~ 284 (285)
T 2o3h_A 272 LGSDHCPITLYLA 284 (285)
T ss_dssp CSSSBCCEEEEEC
T ss_pred CCCCeecEEEEec
Confidence 5799999999985
No 8
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=100.00 E-value=4.6e-34 Score=288.90 Aligned_cols=251 Identities=29% Similarity=0.517 Sum_probs=181.7
Q ss_pred CEEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEEEe
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl~R 80 (632)
|||+||||+|++.... .+.++|...+|||||||||+.....+...++...||..++.. ..++.|||||+|
T Consensus 1 lrv~t~Nv~~~~~~~~---~i~~~i~~~~~Dii~LQE~~~~~~~~~~~~l~~~gy~~~~~~-------~~~~~G~ailsr 70 (268)
T 1ako_A 1 MKFVSFNINGLRARPH---QLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHG-------QKGHYGVALLTK 70 (268)
T ss_dssp CEEEEEECSCGGGCHH---HHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEE-------ETTEEEEEEEES
T ss_pred CEEEEEehhHHHHHHH---HHHHHHHHcCCCEEEEEeccCChhhCCHhHhccCCCcEEEeC-------CCCcceEEEEEe
Confidence 7999999999976544 499999999999999999987655544334445799887753 245679999999
Q ss_pred ecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEee----ceEEEEEEEcCCCCCCc-h
Q 006757 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----GHFILFNVYGPRADSED-T 155 (632)
Q Consensus 81 ~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~----~~~~LinVY~P~~~~~~-~ 155 (632)
.+ ++....++.+ ...+..++++.+.+ +.|.|+|+|+|+..... +
T Consensus 71 ~~----------~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~ 119 (268)
T 1ako_A 71 ET----------PIAVRRGFPG---------------------DDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHP 119 (268)
T ss_dssp SC----------CSEEEESSTT---------------------CCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCT
T ss_pred cC----------cceeeeCCCC---------------------cccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccc
Confidence 84 2333332210 00134567777664 47999999999876421 2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCC-----------CCCCCchhHHHHHHHHHHHhcCCce
Q 006757 156 VRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-----------AGPDFAKNEFRIWFRSMLVESGGSF 224 (632)
Q Consensus 156 er~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~-----------~~~~~~~~~~r~~l~~lL~~~g~~L 224 (632)
++...|..+++.|...++.+...+.++||+||||..+...|... ....+.+.+ +.++..++ +.| |
T Consensus 120 ~~~~~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~l~-~~g--l 195 (268)
T 1ako_A 120 IKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEE-REWMDRLM-SWG--L 195 (268)
T ss_dssp THHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHH-HHHHHHHH-HTT--E
T ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCCEEEEeECCCCCchhcccCcccChhhhccCCCcCcCHHH-HHHHHHHh-cCC--C
Confidence 45667888888888888876556789999999999988777642 123444443 66776655 454 9
Q ss_pred EeeccccCCCCCCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcc
Q 006757 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYR 304 (632)
Q Consensus 225 ~D~~R~~hP~~~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~ 304 (632)
.|+||.++|...+.||||+.+...++.+.+.||||||++..+.. .+.++.|....+.
T Consensus 196 ~D~~~~~~~~~~~~~T~~~~~~~~~~~~~~~riD~il~s~~~~~-------------~~~~~~i~~~~~~---------- 252 (268)
T 1ako_A 196 VDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAE-------------CCVETGIDYEIRS---------- 252 (268)
T ss_dssp EEHHHHHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHT-------------TEEEEEECHHHHT----------
T ss_pred EEeEhhhCCCCCCCeeEeCCcCCccccCceEEEEEEEeCHHHHH-------------HHHhceechhhcC----------
Confidence 99999999986667999999877766677899999999987532 4567777653211
Q ss_pred ccCCCCCCCCCCCccceEEEEe
Q 006757 305 WKGGMSTRLEGSDHAPVYMCLG 326 (632)
Q Consensus 305 W~~~~~~~~~~SDH~PV~~~l~ 326 (632)
...+|||+||+++|.
T Consensus 253 -------~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 253 -------MEKPSDHAPVWATFR 267 (268)
T ss_dssp -------SSSCCSBCCEEEEEC
T ss_pred -------CCCCCCcccEEEEcc
Confidence 136899999999985
No 9
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=100.00 E-value=7.5e-33 Score=274.70 Aligned_cols=227 Identities=23% Similarity=0.444 Sum_probs=161.9
Q ss_pred CEEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEEEe
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl~R 80 (632)
|||+||||+|++...++ ..+.++|+.++|||||||||+.....+.. +...||..++... +..++.|||||+|
T Consensus 8 lri~t~Nv~g~~~~~~~-~~~~~~i~~~~~DIv~LQE~~~~~~~~~~--l~~~~y~~~~~~~-----~~~~~~Gvail~r 79 (238)
T 1vyb_A 8 ITILTLNINGLNSAIKR-HRLASWIKSQDPSVCCIQETHLTCRDTHR--LKIKGWRKIYQAN-----GKQKKAGVAILVS 79 (238)
T ss_dssp EEEEEEECSCCCSHHHH-HHHHHHHHHHCCSEEEEECCCCCTTSGGG--CCCTTCCEEEEEC-----CSSSSCCEEEEEC
T ss_pred ceEEEEecccCCchhhH-HHHHHHHHHcCCCEEEEecccCCCCCchh--HhhCCCCeEEEcc-----CCCCCceEEEEEe
Confidence 69999999999876644 25999999999999999999876554432 2346898654322 1233459999999
Q ss_pred ecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEee----ceEEEEEEEcCCCCCCchH
Q 006757 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----GHFILFNVYGPRADSEDTV 156 (632)
Q Consensus 81 ~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~----~~~~LinVY~P~~~~~~~e 156 (632)
.++ |+.... ...|.+||++.+++ ..+.|+|+|+|+... +
T Consensus 80 ~~~---------~~~~~~-------------------------~~~~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~---~ 122 (238)
T 1vyb_A 80 DKT---------DFKPTK-------------------------IKRDKEGHYIMVKGSIQQEELTILNIYAPNTGA---P 122 (238)
T ss_dssp TTC---------CCEEEE-------------------------EEECTTSSEEEEEEEETTEEEEEEEEECCSSSH---H
T ss_pred CCC---------Cccccc-------------------------eeEcCCCcEEEEEEEeCCCcEEEEEEecCCCCc---H
Confidence 853 222211 01356889887764 579999999998652 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHhcCCceEeeccccCCCCC
Q 006757 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 236 (632)
Q Consensus 157 r~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~ 236 (632)
+|++.|...+... .+.++||+||||..+..+|.... .+.... +.+|..++.+.+ |.|+||..+|...
T Consensus 123 ------~~~~~l~~~l~~~--~~~~~Il~GDFN~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~--l~d~~~~~~~~~~ 189 (238)
T 1vyb_A 123 ------RFIKQVLSDLQRD--LDSHTLIMGDFNTPLSTLDRSTR--QKVNKD-TQELNSALHQAD--LIDIYRTLHPKST 189 (238)
T ss_dssp ------HHHHHHHHHTTTT--CCTTEEEEEECSSCSSGGGBTTC--CCCCHH-HHHHHHHHHHTT--EEEHHHHHCTTCC
T ss_pred ------HHHHHHHHHHHhc--cCCCEEEEccCCCCCCccccCCC--CCCcHH-HHHHHHHHhhCC--CEEhhHhhCCCCC
Confidence 2344443333321 36799999999998887776542 233333 677888887775 9999999999866
Q ss_pred CcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCCCCCCCCCC
Q 006757 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGS 316 (632)
Q Consensus 237 ~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~~~S 316 (632)
+ ||||+.+.+ .+.||||||+++.+.. .+.++.|.+. .+|
T Consensus 190 ~-~T~~~~~~~-----~~~rID~i~~s~~~~~-------------~~~~~~v~~~----------------------~~S 228 (238)
T 1vyb_A 190 E-YTFFSAPHH-----TYSKIDHIVGSKALLS-------------KCKRTEIITN----------------------YLS 228 (238)
T ss_dssp C-CSEEETTTT-----EEECCEEEEEEGGGGG-------------GEEEEEEECC----------------------SSS
T ss_pred c-eeEEcCCCC-----cccceEEEEeCHHHHh-------------hhhhceeecC----------------------CCC
Confidence 5 999987643 3679999999987533 5677777642 689
Q ss_pred CccceEEEEe
Q 006757 317 DHAPVYMCLG 326 (632)
Q Consensus 317 DH~PV~~~l~ 326 (632)
||+||.++|+
T Consensus 229 DH~pv~~~l~ 238 (238)
T 1vyb_A 229 DHSAIKLELR 238 (238)
T ss_dssp SSCEEEEEEC
T ss_pred CcccEEEEeC
Confidence 9999999984
No 10
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.97 E-value=5e-30 Score=259.70 Aligned_cols=212 Identities=17% Similarity=0.151 Sum_probs=141.8
Q ss_pred CEEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEEEe
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl~R 80 (632)
|||+||||||++....+ ++++|++.+|||||||||+. ..||. +.. . ++.||||+++
T Consensus 8 mki~s~Nvn~~r~~~~~---l~~~l~~~~~DIl~LQEt~~-----------~~gy~-~~~--------~-~~~gvail~~ 63 (240)
T 2ei9_A 8 LRIGQINLGGAEDATRE---LPSIARDLGLDIVLVQEQYS-----------MVGFL-AQC--------G-AHPKAGVYIR 63 (240)
T ss_dssp EEEEEEECTTCHHHHHT---HHHHHHHHTCSEEEEESCCT-----------TSSSE-ECC--------S-SSCSEEEEES
T ss_pred ceEEEEecCccHHHHHH---HHHHHHHcCCCEEEeecceE-----------cCCce-Eec--------c-CCCCEEEEEe
Confidence 69999999999987764 99999999999999999972 13787 321 1 2359999998
Q ss_pred ecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEeeceEEEEEEEcCCCCCCchHhHHH
Q 006757 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (632)
Q Consensus 81 ~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~~~~~LinVY~P~~~~~~~er~~f 160 (632)
.+. .|+....++ .+.+++++.++.+.++|+|+|+|++.. ..+
T Consensus 64 ~~~--------~~~~~~~~~-------------------------~~~~~~~i~i~~~~i~i~svY~P~~~~-----~~~ 105 (240)
T 2ei9_A 64 NRV--------LPCAVLHHL-------------------------SSTHITVVHIGGWDLYMVSAYFQYSDP-----IDP 105 (240)
T ss_dssp STT--------SCEEECGGG-------------------------CCSSEEEEEETTTTEEEEEEECCTTSC-----SHH
T ss_pred cCC--------cceeeeccc-------------------------CCCCEEEEEEeeccEEEEEEEcCCCCc-----hhH
Confidence 731 233221111 134667888888889999999999764 245
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHhcCCceEeecc--ccCCCCCCc
Q 006757 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFR--SKHPERREA 238 (632)
Q Consensus 161 k~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~L~D~~R--~~hP~~~~~ 238 (632)
+++|++.|...+ .+.++||+||||+++..++.......+...+ |.+....|. ++.|.+| .++|... .
T Consensus 106 ~~~~l~~l~~~~-----~~~~~Ii~GDfN~~~~~w~~~~~~~~~~~~~-r~~~~~~l~----~~~d~~~l~~~~~~~~-~ 174 (240)
T 2ei9_A 106 YLHRLGNILDRL-----RGARVVICADTNAHSPLWHSLPRHYVGRGQE-VADRRAKME----DFIGARRLVVHNADGH-L 174 (240)
T ss_dssp HHHHHHHHHHHT-----TTSCEEEEEECCCCCGGGTCCHHHHSSSCHH-HHHHHHHHH----HHHHHTTCEECCCTTC-C
T ss_pred HHHHHHHHHHhc-----CCCcEEEEEecccccccccCCCCCCCCcchh-hHHHHHHHH----HHHHhcCCEecCCCCC-C
Confidence 666666654321 3579999999999875433110000222222 334444452 2778888 4477543 5
Q ss_pred ccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCCCCCCCCCCCc
Q 006757 239 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDH 318 (632)
Q Consensus 239 yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~~~SDH 318 (632)
||||+++ .++||||||+++.+.. .++.|.. ..+|||
T Consensus 175 ~T~~s~~-------~~~rID~~l~s~~l~~---------------~~~~i~~----------------------~~~SDH 210 (240)
T 2ei9_A 175 PTFSTAN-------GESYVDVTLSTRGVRV---------------SEWRVTN----------------------ESSSDH 210 (240)
T ss_dssp CSEEETT-------EEECCEEEEECTTCCE---------------EEEEECS----------------------CCSSSB
T ss_pred ceEeCCC-------CceEEEEEEecCcccc---------------CCeEECC----------------------CCCCCc
Confidence 9999874 2689999999987521 3344431 268999
Q ss_pred cceEEEEecCC
Q 006757 319 APVYMCLGEVP 329 (632)
Q Consensus 319 ~PV~~~l~~~~ 329 (632)
+||.++|....
T Consensus 211 ~Pv~~~l~~~~ 221 (240)
T 2ei9_A 211 RLIVFGVGGGT 221 (240)
T ss_dssp CCEEEEEEC--
T ss_pred ccEEEEECCCC
Confidence 99999998754
No 11
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.95 E-value=1.2e-27 Score=240.73 Aligned_cols=221 Identities=15% Similarity=0.134 Sum_probs=139.2
Q ss_pred CEEEEeecccccccccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEEEe
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl~R 80 (632)
|||+||||||++.... .+.++|...+|||||||||+........ ...||..++... ...++.|||||++
T Consensus 20 lri~s~Nv~~~~~~~~---~l~~~i~~~~~DIv~lQE~~~~~~~~~~---~~~gy~~~~~~~-----~~~~~~GvaIl~~ 88 (245)
T 1wdu_A 20 YRVLQANLQRKKLATA---ELAIEAATRKAAIALIQEPYVGGAKSMK---GFRGVRVFQSTA-----QGDGTVKAAIAVF 88 (245)
T ss_dssp EEEEEEECTTCHHHHH---HHHHHHHHHTCSEEEEESCCC------C---CCSSCEEEECCC-----CTTCCCCEEEEEC
T ss_pred eeeeeeeccccHHHHH---HHHHHHhhcCCCEEEEEcccccCCcccc---CCCcceEecccc-----ccCCCCCeEEEEE
Confidence 6999999999987544 4999999999999999999876433221 245887665321 1234569999996
Q ss_pred ecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCc-EEEEe--eceEEEEEEEcCCCCCCchHh
Q 006757 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITD--HGHFILFNVYGPRADSEDTVR 157 (632)
Q Consensus 81 ~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~viv~--~~~~~LinVY~P~~~~~~~er 157 (632)
.. ++.... +. ..+.++. ++.+. ...|.|+|+|+|+... .
T Consensus 89 ~~----------~~~~~~-~~-----------------------~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~----~ 130 (245)
T 1wdu_A 89 DH----------DLDVIQ-YP-----------------------QLTTNNIVVVGIRTRAWEITLVSYYFEPDKP----I 130 (245)
T ss_dssp CS----------SCEEEE-CT-----------------------TTCCSSEEEEEEECSSCEEEEEEEECCTTSC----S
T ss_pred CC----------CcceEE-ec-----------------------ccccCCEEEEEEEcCCCcEEEEEEEeCCCCC----H
Confidence 52 222211 10 0112222 22233 3579999999999653 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHhcCCceEeeccccCCCCCC
Q 006757 158 IQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 237 (632)
Q Consensus 158 ~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~~ 237 (632)
..|++.|...++.+ ...++||+||||+.+..++... .... +.+|.+++...+ | +..+|. +
T Consensus 131 ----~~~~~~l~~~~~~~--~~~~~Ii~GDfN~~~~~~~~~~-----~~~~-~~~l~~~~~~~~--l----~~~~~~--~ 190 (245)
T 1wdu_A 131 ----ESYLEQIKRVERKM--GPKRLIFGGDANAKSTWWGSKE-----DDAR-GDQLMGTLGELG--L----HILNEG--D 190 (245)
T ss_dssp ----HHHHHHHHHHHHTT--CSSSEEEEEECCCCCGGGTCSS-----CCHH-HHHHHHHHHHHT--C----EECCCS--C
T ss_pred ----HHHHHHHHHHHHHh--CCCcEEEEeccccCcccCCCCC-----cCcc-hHHHHHHHHHCC--c----EEecCC--C
Confidence 23455555544432 4579999999999875544211 1122 456777777665 4 344553 3
Q ss_pred cccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCCCCCCCCCCC
Q 006757 238 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSD 317 (632)
Q Consensus 238 ~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~~~~~~SD 317 (632)
.||||+.+.+. +.++||||||++..+.. .|.++.|... ..+||
T Consensus 191 ~~T~~~~~~~~---~~~~rID~i~~s~~~~~-------------~v~~~~v~~~---------------------~~~SD 233 (245)
T 1wdu_A 191 VPTFDTIRGGK---RYQSRVDVTFCTEDMLD-------------LIDGWRVDED---------------------LVSSD 233 (245)
T ss_dssp CCSEEC--------CCEECCEEEEECGGGBT-------------TEEEEEECTT---------------------SSSSS
T ss_pred CCcEECCCCCC---CCCCEEEEEEeChHHHh-------------hccceEEcCC---------------------CCCCC
Confidence 59999986532 34799999999987543 5677777641 37899
Q ss_pred ccceEEEEec
Q 006757 318 HAPVYMCLGE 327 (632)
Q Consensus 318 H~PV~~~l~~ 327 (632)
|+||+++|..
T Consensus 234 H~Pv~~~l~l 243 (245)
T 1wdu_A 234 HNGMVFNIRL 243 (245)
T ss_dssp BCCEEEEECC
T ss_pred cccEEEEEEe
Confidence 9999999975
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.95 E-value=1.4e-26 Score=248.15 Aligned_cols=230 Identities=16% Similarity=0.199 Sum_probs=140.6
Q ss_pred CEEEEeecccccc--cccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEE
Q 006757 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (632)
Q Consensus 1 mKIlSwNVnGlr~--~~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl 78 (632)
|||+||||+|+.. ...|...|.++|..++||||||||+... .+..-.....+|..|+. +..++.|+|||
T Consensus 120 lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~--~~~~l~~~~~~y~~~~~-------~~~~~~G~aIl 190 (362)
T 4gew_A 120 VSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDR--DLAPIDKLQSLYKIYYS-------NKGCQYYTAIL 190 (362)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECST--TCHHHHGGGGTEEEEES-------STTSSSEEEEE
T ss_pred EEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEcCChh--HhHHHHHhcCCceEEeC-------CCCCCceEEEE
Confidence 7999999999854 3334456999999999999999998532 22211123345665553 23455699999
Q ss_pred EeecCCCCCcccccceeeee-cccCcccccCcccccCccccchhhhcccCCCCc-EEEEe----eceEEEEEEEcCCCCC
Q 006757 79 CRVKSPFSSTEVALPVAAEE-GFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITD----HGHFILFNVYGPRADS 152 (632)
Q Consensus 79 ~R~~~~f~~~~~~~Pi~~e~-gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~viv~----~~~~~LinVY~P~~~~ 152 (632)
+|.+ +.... ..... .....+| ++.+. ...|.|+|+|+++...
T Consensus 191 sk~~-----------i~~~~~~~~~~---------------------~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~ 238 (362)
T 4gew_A 191 VSKM-----------FDVEKHDVIHF---------------------QNSGMYRTLQILEGSIGGLKVFLLNTHLESTRE 238 (362)
T ss_dssp EETT-----------EEEEEEEEEEC---------------------TTCSSCCEEEEEEEEETTEEEEEEEEECCCSGG
T ss_pred Eecc-----------CccccccccCC---------------------CCCcccceEEEEEEEECCEEEEEEEecCCcccc
Confidence 9973 22211 11000 0011223 22222 3469999999998654
Q ss_pred CchHhHHHHHHHHHHHHHHHHHH--HhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHhcCCceEeeccc
Q 006757 153 EDTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230 (632)
Q Consensus 153 ~~~er~~fk~~f~~~L~~~i~~l--~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~L~D~~R~ 230 (632)
...+| ...+..+..++..+ ...+.+|||+||||..+...+.. .. +|.|+|+.
T Consensus 239 ~~~~R----~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~~~--------------------~~--gl~Da~~~ 292 (362)
T 4gew_A 239 HRPQR----CAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV--------------------PD--GVKDAWEA 292 (362)
T ss_dssp GHHHH----HHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCCCC--------------------CT--TCEEHHHH
T ss_pred chhHH----HHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccchh--------------------cc--hHHHHHHH
Confidence 22233 33334444444433 24578999999999865442210 12 49999999
Q ss_pred cCCCCCCcccccCCCCCCccc--CccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCC
Q 006757 231 KHPERREAYTCWPSNTGAEQF--NYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGG 308 (632)
Q Consensus 231 ~hP~~~~~yT~~s~~~~a~~~--n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~ 308 (632)
.++.....||||......... ..+.||||||+++.+ .+.++.+....+. +
T Consensus 293 ~~~~~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~l---------------~~~~~~vi~~~ri------~------- 344 (362)
T 4gew_A 293 AGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPL---------------DKVKFTLEGRQRI------R------- 344 (362)
T ss_dssp TTCCGGGCCSEETTTCTTSCCSSCCEECCEEEEEESSC---------------CEEEEEEECCSCC------T-------
T ss_pred hCCCCCCCcCcccccCcccccCCCCCcceEEEEEcCCc---------------ceeEEEEEeeeec------C-------
Confidence 887655569999877654333 245799999999875 3344444432110 0
Q ss_pred CCCCCCCCCccceEEEEe
Q 006757 309 MSTRLEGSDHAPVYMCLG 326 (632)
Q Consensus 309 ~~~~~~~SDH~PV~~~l~ 326 (632)
.....+|||+||+++|.
T Consensus 345 -~~~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 345 -SCLCFPSDHWAINATFF 361 (362)
T ss_dssp -TTSSCSCSSCEEEEEEE
T ss_pred -CCCCCCCcccCEEEEEc
Confidence 01235799999999985
No 13
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.93 E-value=5e-25 Score=219.67 Aligned_cols=231 Identities=15% Similarity=0.189 Sum_probs=135.9
Q ss_pred CEEEEeeccccccc--ccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEE
Q 006757 1 MKIVTYNVNGLRQR--VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (632)
Q Consensus 1 mKIlSwNVnGlr~~--~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl 78 (632)
|||+||||+|+... ..|...|.++|+.++||||||||+.- ..+. .+....+|..++... ..+..|++|+
T Consensus 14 l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~--~~~~-~l~~~~~~~~~~~~~------~~~~~g~~il 84 (256)
T 4fva_A 14 VSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVD--RDLA-PIDKLQSLYKIYYSN------KGCQYYTAIL 84 (256)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECS--TTCH-HHHGGGGTEEEEESS------TTSSSEEEEE
T ss_pred EEEEEEecCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEecCh--hHhH-HHHHhcCCceEeecC------CCCCcceEEE
Confidence 69999999998543 23334699999999999999999853 2222 233333444444322 2344599999
Q ss_pred EeecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCc-EEEEe----eceEEEEEEEcCCCCCC
Q 006757 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITD----HGHFILFNVYGPRADSE 153 (632)
Q Consensus 79 ~R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~viv~----~~~~~LinVY~P~~~~~ 153 (632)
++.++ ++.....+. + . ....++ .+.+. ...|.|+|+|+++....
T Consensus 85 ~~~~~---------~~~~~~~~~-~--------------------~-~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~ 133 (256)
T 4fva_A 85 VSKMF---------DVEKHDVIH-F--------------------Q-NSGMYRTLQILEGSIGGLKVFLLNTHLESTREH 133 (256)
T ss_dssp EETTC---------EEEEEEEEE-C--------------------T-TCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred Eeecc---------cceeccccc-C--------------------C-CCcccceeEEEEEEeCCeEEEEEEecCCCCCcc
Confidence 98742 222111110 0 0 011222 22222 34699999999886542
Q ss_pred chHhHHHHHHHHHHHHHHHHHH--HhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHhcCCceEeecccc
Q 006757 154 DTVRIQFKLQFFHVLQKRWEFL--LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231 (632)
Q Consensus 154 ~~er~~fk~~f~~~L~~~i~~l--~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~ 231 (632)
..++.. .+..+...+..+ ...+.++||+||||..+...... .. +|.|+|+..
T Consensus 134 ~~~~~~----q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~~~--------------------~~--~~~d~~~~~ 187 (256)
T 4fva_A 134 RPQRCA----QFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV--------------------PD--GVKDAWEAA 187 (256)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCCCC--------------------CT--TCEEHHHHT
T ss_pred hHHHHH----HHHHHHHHhhhhhhccCCCcEEEeccCCCCcchhhhh--------------------hc--chhhHHHHh
Confidence 222322 222333333322 24578999999999754432110 02 499999998
Q ss_pred CCCCCCcccccCCCCCCcc--cCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCCC
Q 006757 232 HPERREAYTCWPSNTGAEQ--FNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGM 309 (632)
Q Consensus 232 hP~~~~~yT~~s~~~~a~~--~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~ 309 (632)
++.....|||+........ .....||||||+++.+ .+.++++....+. +
T Consensus 188 ~~~~~~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~~~---------------~~~~~~~~~~~~~------~-------- 238 (256)
T 4fva_A 188 GSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPL---------------DKVKFTLEGRQRI------R-------- 238 (256)
T ss_dssp TCCGGGCCSEETTTCCSSCSCCSCEECCEEEEEESSC---------------CEEEEEEECCSCC------T--------
T ss_pred CCCCCCCcccccccCcccccCCCCCcCeEEEEEcCCc---------------eeeEEEEEeeEec------C--------
Confidence 7765556999876544322 2345799999999875 3444554432110 0
Q ss_pred CCCCCCCCccceEEEEe
Q 006757 310 STRLEGSDHAPVYMCLG 326 (632)
Q Consensus 310 ~~~~~~SDH~PV~~~l~ 326 (632)
.....+|||+||+++|.
T Consensus 239 ~~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 239 SCLCFPSDHWAINATFF 255 (256)
T ss_dssp TTCSCSCSSCEEEEEEE
T ss_pred CCCCCcCcccCEEEEEc
Confidence 01235799999999985
No 14
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.91 E-value=2.1e-23 Score=204.72 Aligned_cols=202 Identities=15% Similarity=0.182 Sum_probs=119.0
Q ss_pred CEEEEeeccccccc--ccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEE
Q 006757 1 MKIVTYNVNGLRQR--VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (632)
Q Consensus 1 mKIlSwNVnGlr~~--~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl 78 (632)
|||+||||+|+... ..|...|.++|+.++||||||||+.. ..+ ..+....++..++... ..++.|++++
T Consensus 4 l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~--~~~-~~l~~~~~~~~~~~~~------~~~~~~~~~~ 74 (250)
T 4f1h_A 4 LSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIP--AYV-QYLKKRAVSYLFFEGS------DDGYFTGIML 74 (250)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECH--HHH-HHHHHHCTTEEEEESC------SSSSEEEEEE
T ss_pred EEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEeCCH--HHH-HHHHHhccCceeeccc------ccccCceeEE
Confidence 79999999998643 22334699999999999999999852 222 2233444555555432 2344477777
Q ss_pred EeecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEE-Ee----eceEEEEEEEcCCCCCC
Q 006757 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI-TD----HGHFILFNVYGPRADSE 153 (632)
Q Consensus 79 ~R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~vi-v~----~~~~~LinVY~P~~~~~ 153 (632)
.+.. .|+.....+. ......++.++ +. ...+.++++|++.....
T Consensus 75 ~~~~---------~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~ 123 (250)
T 4f1h_A 75 RKSR---------VKFLESEIIC----------------------FPTTQMMRNLLIAQVTFSGQKLYLMTSHLESCKNQ 123 (250)
T ss_dssp ETTT---------CEEEEEEEEE----------------------CTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG
T ss_pred eecc---------ccceeccccc----------------------ccCccccceEEEEEEecCCcEEEEecccccccccc
Confidence 6653 1332221110 00112333332 22 24689999999876532
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHhcCCceEeeccccCC
Q 006757 154 DTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233 (632)
Q Consensus 154 ~~er~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~hP 233 (632)
. ..+..++..|.+++++ ...+.+|||+||||+.+...+... + ....+.|+|+.+++
T Consensus 124 ~----~~r~~q~~~~~~~l~~-~~~~~pvIl~GDfN~~~~~~~~~~-----------------~--~~~~~~~~~~~~~~ 179 (250)
T 4f1h_A 124 S----QERTKQLRVVLQKIKE-APEDAIVIFAGDTNLRDAEVANVG-----------------G--LPAGVCDVWEQLGK 179 (250)
T ss_dssp H----HHHHHHHHHHHHHHHH-SCTTEEEEEEEECCCCHHHHHTTT-----------------S--SCTTEEEHHHHTTC
T ss_pred H----HHHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCcchhhhh-----------------h--ccccchHHHHHhcC
Confidence 2 2234445555555543 235578999999997544322110 1 11248899998888
Q ss_pred CCCCcccccCCCCC--CcccCccceeEEEEEeCCC
Q 006757 234 ERREAYTCWPSNTG--AEQFNYGTRIDHILCAGPC 266 (632)
Q Consensus 234 ~~~~~yT~~s~~~~--a~~~n~gsRIDyIL~s~~~ 266 (632)
.....++|+..... ......+.||||||+++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~ 214 (250)
T 4f1h_A 180 QEHCRYTWDTKANSNKTVPYVSRCRFDRIFLRSAK 214 (250)
T ss_dssp CGGGCCSEETTTCCSSCCSSCCEECCEEEEEECCT
T ss_pred CccCCcccccccCCCCCcCCCCCccEEEEEEeCcc
Confidence 76655666554322 2234467899999999864
No 15
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.91 E-value=1.1e-23 Score=212.38 Aligned_cols=239 Identities=19% Similarity=0.200 Sum_probs=137.6
Q ss_pred CEEEEeecccccccc--cchhHHHHHHHhcCCcEEEEeccccccc-----------c----chhhhHhhc--CCeEEeec
Q 006757 1 MKIVTYNVNGLRQRV--SQFGSLRKLLDSFDADIICFQETKLRRQ-----------E----LKSDLVMAD--GYESFFSC 61 (632)
Q Consensus 1 mKIlSwNVnGlr~~~--~r~~~l~~~L~~~~aDIIcLQETk~~~~-----------~----l~~~l~~~~--GY~~~fs~ 61 (632)
|||+||||++..... .+...|.++|..++||||||||+..... . +.+.+.... +|..++..
T Consensus 4 l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~y~~~~~~ 83 (266)
T 3teb_A 4 MKILTVNVHAWLEENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYLHWSN 83 (266)
T ss_dssp EEEEEEECCTTCSTTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCCSCCEEEEEE
T ss_pred eEEEEEecccccCcchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Confidence 699999998764322 1223588999999999999999964321 0 222222222 47765432
Q ss_pred cCCCCCCCCCcceEEEEEeecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEee----
Q 006757 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH---- 137 (632)
Q Consensus 62 ~~~~~~gr~GysGVAIl~R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~---- 137 (632)
... ....+..|+|||+|.+ +.....+. +.. .+.. ...+ ..+++.+.+
T Consensus 84 ~~~--~~~~~~~g~ailsr~~-----------~~~~~~~~-~~~--~~~~------------~~~~-~r~~~~~~~~~~~ 134 (266)
T 3teb_A 84 SHI--GFGKYNEGVAVITRHK-----------IKAEDEFY-CTF--AQSV------------RTIS-ARRIVSITINYEG 134 (266)
T ss_dssp EEE--CSTTEEEEEEEEESSC-----------CSEEEEEE-CSS--CCCT------------TCTT-CCEEEEEEEEETT
T ss_pred ccc--CccccCCeEEEEECce-----------ecCceeEE-eCC--CCCC------------CCcc-cceEEEEEEEeCC
Confidence 211 1122335999999873 32211110 000 0000 0011 123333332
Q ss_pred ceEEEEEEEcCCCCCCchHhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHH
Q 006757 138 GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML 217 (632)
Q Consensus 138 ~~~~LinVY~P~~~~~~~er~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL 217 (632)
..|.|+|+|.+........| ...+..|...+ ..+.++||+||||..+.. . ...++.++
T Consensus 135 ~~~~v~~~Hl~~~~~~~~~r----~~q~~~l~~~~----~~~~~~il~GDfN~~~~~-----------~---~~~~~~l~ 192 (266)
T 3teb_A 135 QDIEFYSCHMNLPNCETEDM----GKNIQTILNRT----QNSNLKILMGDFNTDAIG-----------N---VAAYENIL 192 (266)
T ss_dssp EEEEEEEEECCCTTCTTCCH----HHHHHHHHTSS----CSCCEEEEEEECCCCTTT-----------C---HHHHHHHH
T ss_pred eEEEEEEecCCCccCChHHH----HHHHHHHHHHH----hcCCcEEEEeECCCCCCC-----------C---CcHHHhhc
Confidence 57999999998864322333 23343333332 237899999999986521 0 12344444
Q ss_pred HhcCCceEeeccccCCCCCCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCC
Q 006757 218 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 297 (632)
Q Consensus 218 ~~~g~~L~D~~R~~hP~~~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~ 297 (632)
.. +|.|+|+..+|...+ |||............+.||||||++..+ .+..+.+.....
T Consensus 193 -~~--~l~d~~~~~~~~~~~-~t~~~~~~~~~~~~~~~riD~i~~s~~~---------------~~~~~~v~~~~~---- 249 (266)
T 3teb_A 193 -SQ--GLFDTYVMAEKKDDG-ITVDKSIHGWDNDKAKKRLDYIFSNKEL---------------KVKESKVIFNNK---- 249 (266)
T ss_dssp -TT--TCEEHHHHCSEECCC-CCEECC------CTTEECCEEEEESSCC---------------CEEEEEEESSSS----
T ss_pred -cc--cccchHHhhccccCC-ccccCccCCcCcCCcCCeeEEEEeCCCe---------------EEEEEEEEeCCC----
Confidence 33 499999999988665 8885433222122467899999999865 467777765310
Q ss_pred CCCCCccccCCCCCCCCCCCccceEEEEe
Q 006757 298 GNAPSYRWKGGMSTRLEGSDHAPVYMCLG 326 (632)
Q Consensus 298 ~~~~~~~W~~~~~~~~~~SDH~PV~~~l~ 326 (632)
.....|||+||+++|.
T Consensus 250 -------------~~~~~SDH~Pv~~~l~ 265 (266)
T 3teb_A 250 -------------NKEIVSDHFGIEVKIE 265 (266)
T ss_dssp -------------SSCCCSSSCEEEEEEC
T ss_pred -------------CCCCcCCccCEEEEEE
Confidence 1236799999999986
No 16
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.91 E-value=7.3e-23 Score=206.36 Aligned_cols=239 Identities=18% Similarity=0.138 Sum_probs=142.9
Q ss_pred CEEEEeecccccccc------cchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcce
Q 006757 1 MKIVTYNVNGLRQRV------SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSG 74 (632)
Q Consensus 1 mKIlSwNVnGlr~~~------~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysG 74 (632)
|||+||||++.+... .|...+.++|..++||||||||+... .+ ..+....||..+..... .+ .+..|
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~--~~-~~l~~~l~y~~~~~~~~---~~-~~~~g 73 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPN--QV-RDLKAYTTFTCLSAERE---GD-GQGEG 73 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHH--HH-HHHHHHSSSEEEEEESS---SS-SCSCE
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHHcCCCEEEEeCCCHH--HH-HHHHhcCCCcEEEeccc---CC-CCCce
Confidence 799999999886542 23346999999999999999999632 22 22334459976554321 12 23359
Q ss_pred EEEEEeecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEE-E--e----eceEEEEEEEc
Q 006757 75 VATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI-T--D----HGHFILFNVYG 147 (632)
Q Consensus 75 VAIl~R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~vi-v--~----~~~~~LinVY~ 147 (632)
+|||+|.. . .|+.....+. +.. .|...+ . ..-..+.|.++ + + ...+.|+|+|.
T Consensus 74 ~ail~r~~-~-------~~~~~~~~~~-l~~--~~~~~~-~--------~~~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl 133 (257)
T 3l1w_A 74 LAILYNEQ-K-------VQAIDTGYFW-LSE--TPQQPS-I--------HPEAGCPRIALWGLFKETTQNTPFLVINVHL 133 (257)
T ss_dssp EEEEECTT-T-------EEEEEEEEEE-SSS--STTSSC-C--------CTTCSSCCEEEEEEEEETTCSSCEEEEEEEC
T ss_pred EEEEEEcc-e-------EEEEecCeEE-CcC--CCCccc-c--------cccccccceeEEEEEEEcCCCCEEEEEEeCC
Confidence 99999852 0 1332222110 000 000000 0 00013455543 2 2 24699999999
Q ss_pred CCCCCCchHhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHhcCCceEee
Q 006757 148 PRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDV 227 (632)
Q Consensus 148 P~~~~~~~er~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~L~D~ 227 (632)
+.... ..|...+..|..+++..+..+ ++||+||||..+.. ..++ +|.. +|.|+
T Consensus 134 ~~~~~------~~r~~q~~~l~~~i~~~~~~~-pvil~GDfN~~~~~----------------~~~~-~l~~---~l~d~ 186 (257)
T 3l1w_A 134 DHISA------HARLAGMTVILEELHDKIAQY-PTLLMGDFNAESGE----------------EVHQ-LVQK---KFQDS 186 (257)
T ss_dssp CSSCH------HHHHHHHHHHHHHTHHHHHHS-CEEEEEECCCCTTS----------------HHHH-HHTT---TCEEG
T ss_pred CCCCH------HHHHHHHHHHHHHHHHHcCCC-CEEEEeeCCCCCCc----------------HHHH-Hhhh---hccch
Confidence 87542 234555666666666333444 99999999975432 1122 3322 49999
Q ss_pred ccccCCCCCCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccC
Q 006757 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKG 307 (632)
Q Consensus 228 ~R~~hP~~~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~ 307 (632)
|+..++... .+||...... ++.+.+.||||||+ ..+ .+.++.+.....
T Consensus 187 ~~~~~~~~~-~~t~~~~~~~-~~~~~~~riD~i~~-~~~---------------~~~~~~v~~~~~-------------- 234 (257)
T 3l1w_A 187 KNLATHYGP-RGTFQNFTYT-KPWAELEEIDYIYV-KGW---------------QVQQTASLTDSI-------------- 234 (257)
T ss_dssp GGTSEEESC-SCCBCTTCTT-CCGGGCBCCEEEEE-ESE---------------EEEEEEECCCCB--------------
T ss_pred hhhhcccCC-CCcccCCccc-CCCCCCCceeEEEE-CCc---------------EEEEEEEeccCc--------------
Confidence 999887633 3777654321 23445689999999 543 566777665310
Q ss_pred CCCCCCCCCCccceEEEEecC
Q 006757 308 GMSTRLEGSDHAPVYMCLGEV 328 (632)
Q Consensus 308 ~~~~~~~~SDH~PV~~~l~~~ 328 (632)
....+|||+||+++|...
T Consensus 235 ---~~~~~SDH~pv~~~l~~~ 252 (257)
T 3l1w_A 235 ---DGRFPSDHFPLEAEVAGE 252 (257)
T ss_dssp ---TTBCSSSBCCEEEEEEEC
T ss_pred ---CCcccCCcceEEEEEEEE
Confidence 123689999999999864
No 17
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.90 E-value=2.1e-23 Score=207.54 Aligned_cols=235 Identities=15% Similarity=0.114 Sum_probs=130.7
Q ss_pred CEEEEeeccccccc--ccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhhcCCeEEeeccCCCCCCCCCcceEEEE
Q 006757 1 MKIVTYNVNGLRQR--VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (632)
Q Consensus 1 mKIlSwNVnGlr~~--~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl 78 (632)
|||+||||+|+... ..|...|.++|..++||||||||+.- +.+ ..+... .+..++... +..++ |.+++
T Consensus 10 l~v~swNi~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~--~~~-~~l~~~-~~~~~~~~~-----~~~~~-~~~~l 79 (256)
T 4gz1_A 10 ISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIP--PYC-AYLKKR-AASYTIITG-----NEEGY-FTAIL 79 (256)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECH--HHH-HHHHHH-CTTEEEEES-----CSSSS-EEEEE
T ss_pred EEEEEEEcCCCcCcCHHHHHHHHHHHHHHcCCCEEEEEcCCH--HHH-HHHHhh-ccccceeec-----cccCC-ceEEE
Confidence 69999999998643 23334699999999999999999842 222 222222 233222221 22344 55566
Q ss_pred EeecCCCCCcccccceeeee-cccCcccccCcccccCccccchhhhcccCCCCcE-EEEe----eceEEEEEEEcCCCCC
Q 006757 79 CRVKSPFSSTEVALPVAAEE-GFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRC-VITD----HGHFILFNVYGPRADS 152 (632)
Q Consensus 79 ~R~~~~f~~~~~~~Pi~~e~-gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~-viv~----~~~~~LinVY~P~~~~ 152 (632)
++.. ++.... ..... .-...++. +.+. ...+.|+|+|+++...
T Consensus 80 ~~~~----------~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~ 128 (256)
T 4gz1_A 80 LKKG----------RVKFKSQEIIPF---------------------PNTKMMRNLLCVNVSLGGNEFCLMTSHLESTRE 128 (256)
T ss_dssp EETT----------TEEEEEEEEEEC---------------------TTCSSCCEEEEEEEEETTEEEEEEECBCCCSGG
T ss_pred EEec----------cccceecccccC---------------------CcccccceEEEEEEEeCCEEEEEEeeccccccc
Confidence 5552 222211 11000 00112222 2222 3479999999987653
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHhcCCceEeeccccC
Q 006757 153 EDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232 (632)
Q Consensus 153 ~~~er~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~L~D~~R~~h 232 (632)
... .+.+.+..+...++. ...+.+|||+||||..+...+ . ..+ ...++.|+|+..+
T Consensus 129 ~~~----~~~~q~~~~~~~l~~-~~~~~pvIl~GDfN~~~~~~~----------------~-~~~--~~~~~~~~~~~~~ 184 (256)
T 4gz1_A 129 HSA----ERIRQLKTVLGKMQE-APDSTTVIFAGDTNLRDQEVI----------------K-CGG--LPDNVFDAWEFLG 184 (256)
T ss_dssp GHH----HHHHHHHHHHHHHHH-SCTTSEEEEEEECCCCHHHHH----------------H-HTC--SCTTEEEHHHHTT
T ss_pred chh----hhhHHHHHHhhhhhh-ccCcceEEEeCccCCCcchhh----------------h-hhh--ccchhhhHHHHhc
Confidence 222 233344444444443 245679999999997533211 1 111 1125999999888
Q ss_pred CCCCCcccccCCCCC--CcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccccCCCC
Q 006757 233 PERREAYTCWPSNTG--AEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMS 310 (632)
Q Consensus 233 P~~~~~yT~~s~~~~--a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W~~~~~ 310 (632)
+.....|||+..... ....+.+.||||||+++.... + .+..+++....+ .+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~----~--------~~~~~~~~~~~~------~~--------- 237 (256)
T 4gz1_A 185 KPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGH----L--------IPQSLDLVGLEK------LD--------- 237 (256)
T ss_dssp CCGGGSCSEETTTCCTTCCSSCCEECCEEEEEECC-CS----E--------EEEEEEEECCSC------CT---------
T ss_pred CCCCCCcccccCCCCccccCCCCCccEEEEEEECCccc----e--------eeeEEEEEeccc------cC---------
Confidence 665545666554322 223456789999999876321 0 233444433210 00
Q ss_pred CCCCCCCccceEEEEec
Q 006757 311 TRLEGSDHAPVYMCLGE 327 (632)
Q Consensus 311 ~~~~~SDH~PV~~~l~~ 327 (632)
....+|||+||+++|++
T Consensus 238 ~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 238 CGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp TSSCSCSBCEEEEEEEE
T ss_pred CCCCCCccccEEEEEEE
Confidence 12467999999999986
No 18
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.89 E-value=5.2e-22 Score=201.47 Aligned_cols=243 Identities=17% Similarity=0.171 Sum_probs=143.3
Q ss_pred CEEEEeeccccccc------ccchhHHHHHHHhcCCcEEEEeccccccccchhhhHhh-cCCeEEeeccCCCCCCCCCcc
Q 006757 1 MKIVTYNVNGLRQR------VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMA-DGYESFFSCTRTSDKGRTGYS 73 (632)
Q Consensus 1 mKIlSwNVnGlr~~------~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~~-~GY~~~fs~~~~~~~gr~Gys 73 (632)
|||+||||++.+.. ..+...+.++|..++||||||||+... .+ ..+... .+|..+..... .+..+..
T Consensus 4 l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~--~~-~~l~~~l~~y~~~~~~~~---~~~~~g~ 77 (267)
T 3g6s_A 4 VRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHN--QF-QDLRAGLPEYDGIGVGRD---DGKTAGE 77 (267)
T ss_dssp EEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHH--HH-HHHHHHCTTEEEECCCTT---TSSSSSC
T ss_pred EEEEEEEeccCCCCccccCHHHHHHHHHHHHHHcCCCEEEEecCCHH--HH-HHHHHhccCCcEEEecCC---CCCcCCc
Confidence 69999999987641 123346999999999999999999742 22 223332 68877553221 1222334
Q ss_pred eEEEEEeecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhccc-CCCCcEE-EE--e----eceEEEEEE
Q 006757 74 GVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKI-DSEGRCV-IT--D----HGHFILFNV 145 (632)
Q Consensus 74 GVAIl~R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~-D~eGR~v-iv--~----~~~~~LinV 145 (632)
|+|||+|.. . .|+.....+. +.. .|.... . ..+ ..+.|.+ .+ . ...|.|+|+
T Consensus 78 ~~ail~~~s-~-------~~~~~~~~~~-l~~--~~~~~~-~--------~~~~~~~~R~~~~~~~~~~~~~~~~~v~~~ 137 (267)
T 3g6s_A 78 YAPLFYRKD-K-------YEVLDSNTFW-LAE--NPDSVG-M--------MGWDAVCVRIATWAKFKDKATGKIFMAVNT 137 (267)
T ss_dssp BCCEEEETT-T-------EEEEEEEEEE-SSS--CTTSTT-C--------CCTTCSSCCEEEEEEEEETTTCCEEEEEEE
T ss_pred eeEEEEEcc-c-------eEEEecccEe-cCC--CCCccc-c--------ccccccCcceEEEEEEEEcCCCCEEEEEEe
Confidence 699997752 1 2333222110 000 000000 0 001 1234543 22 2 237999999
Q ss_pred EcCCCCCCchHhHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHhcCCceE
Q 006757 146 YGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFF 225 (632)
Q Consensus 146 Y~P~~~~~~~er~~fk~~f~~~L~~~i~~l~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~L~ 225 (632)
|++.... ..|...++.|..+++.+ ..+.++||+||||..+... .++ .|...+..|.
T Consensus 138 Hl~~~~~------~~R~~q~~~l~~~l~~~-~~~~pvIl~GDfN~~~~~~----------------~~~-~l~~~~~~l~ 193 (267)
T 3g6s_A 138 HFDHVGE------EARRQSALLIIRKIKEI-VGERPAVVTGDFNVTDASD----------------AYE-TITTNEFVMK 193 (267)
T ss_dssp ECCSSCH------HHHHHHHHHHHHHHHHH-TTTSCEEEEEECSSCTTSH----------------HHH-HHHSSSSCCE
T ss_pred CCCCCCH------HHHHHHHHHHHHHHHHh-cCCCCEEEEeECCCCCCCH----------------HHH-HhhcCCcchh
Confidence 9987542 23445556666666664 3478999999999854421 122 3332211399
Q ss_pred eeccccCCCCCCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCccc
Q 006757 226 DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRW 305 (632)
Q Consensus 226 D~~R~~hP~~~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~~~~~~~~~~W 305 (632)
|+|+..++.....|||....... .+.+.||||||+++.+ .+..+.+.... +
T Consensus 194 d~~~~~~~~~~~~~T~~~~~~~~--~~~~~riD~I~~s~~~---------------~~~~~~v~~~~------------~ 244 (267)
T 3g6s_A 194 DAYKTAARVTGVDYTFHDFARIP--AEDCEKIDFIFVTPQV---------------LVKSCEIPAEV------------P 244 (267)
T ss_dssp EHHHHCSEEEECSCSBCTTTTSC--GGGCCCCEEEEECTTS---------------EEEEEEECCCC------------S
T ss_pred hhHhhhccccCCCCCEeCCCCCC--CCCCCcEeEEEeCCCc---------------eEEEEEEecCC------------C
Confidence 99998874322247887654321 3457899999999874 56777776530 0
Q ss_pred cCCCCCCCCCCCccceEEEEecC
Q 006757 306 KGGMSTRLEGSDHAPVYMCLGEV 328 (632)
Q Consensus 306 ~~~~~~~~~~SDH~PV~~~l~~~ 328 (632)
.. ..|||+||.+++...
T Consensus 245 -----~~-~~SDH~PV~a~~~~~ 261 (267)
T 3g6s_A 245 -----EA-LLSDHNPQLADLELE 261 (267)
T ss_dssp -----SS-CCCSBCCEEEEEEEC
T ss_pred -----CC-CCCCcccEEEEEEec
Confidence 02 579999999999764
No 19
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.86 E-value=4e-21 Score=198.10 Aligned_cols=212 Identities=15% Similarity=0.111 Sum_probs=116.0
Q ss_pred CEEEEeeccccccc-------ccchhHHHHHHHhcCCcEEEEecccccc--ccchhhhHhhcCCeEEeeccCCC---C--
Q 006757 1 MKIVTYNVNGLRQR-------VSQFGSLRKLLDSFDADIICFQETKLRR--QELKSDLVMADGYESFFSCTRTS---D-- 66 (632)
Q Consensus 1 mKIlSwNVnGlr~~-------~~r~~~l~~~L~~~~aDIIcLQETk~~~--~~l~~~l~~~~GY~~~fs~~~~~---~-- 66 (632)
|||+||||++++.. ..|...+...|...+||||||||+.... ..+...+ ..+|...+...... .
T Consensus 11 lrv~t~Ni~~~~~~~~~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l--~~~~~~~~~~~~~~~~~~~~ 88 (301)
T 1zwx_A 11 FKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNL--REMYPHQTPVIGRSKHGWDK 88 (301)
T ss_dssp CEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHT--TTTCCEECCCTTSCSTTCSE
T ss_pred eEEEEEECccCCccccCCCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHH--hhcCCccccccCCccccccc
Confidence 79999999987432 1222235555678899999999997532 1221111 22332211110000 0
Q ss_pred ------CCCCCcceEEEEEeecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCc-EEEEee--
Q 006757 67 ------KGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITDH-- 137 (632)
Q Consensus 67 ------~gr~GysGVAIl~R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~viv~~-- 137 (632)
....+..|||||+|. |+.....+. +... .+.+ ..+.| ++.+.+
T Consensus 89 ~~g~~~~~~~~~~G~ailSr~-----------pi~~~~~~~-~~~~------~~~~----------~~~~r~~~~~~~~~ 140 (301)
T 1zwx_A 89 TEGNYSNFALEDGGVAVVSQW-----------PIVEKSQHI-FQRG------GGAD----------RLSNKGFAYVKIMK 140 (301)
T ss_dssp EEC-----CCBCCCCEEEESS-----------CEEEEEEEE-CSCC------CGGG----------GGBCCEEEEEEEEE
T ss_pred cccccccccccCCCEEEEecC-----------CcccceEEE-ecCC------CCcc----------cccCCCeEEEEEEE
Confidence 011244699999997 443322110 0000 0000 01223 333332
Q ss_pred --ceEEEEEEEcCCCCCCc--hHhHHHHHHHHHHHHHHHHHH-HhcCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHH
Q 006757 138 --GHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIW 212 (632)
Q Consensus 138 --~~~~LinVY~P~~~~~~--~er~~fk~~f~~~L~~~i~~l-~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~ 212 (632)
..|.|+|+|+++..... ......|..+++.|..+++.. ...+.++||+||||..+... .
T Consensus 141 ~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~----------------~ 204 (301)
T 1zwx_A 141 NGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTD----------------E 204 (301)
T ss_dssp TTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSH----------------H
T ss_pred CCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCcH----------------H
Confidence 46999999998864321 134455677778888877765 23568999999999865431 2
Q ss_pred HHHHHHhcCCceE--eeccccCCCCCCcccccCCCCC----CcccCccceeEEEEEeCCC
Q 006757 213 FRSMLVESGGSFF--DVFRSKHPERREAYTCWPSNTG----AEQFNYGTRIDHILCAGPC 266 (632)
Q Consensus 213 l~~lL~~~g~~L~--D~~R~~hP~~~~~yT~~s~~~~----a~~~n~gsRIDyIL~s~~~ 266 (632)
++.++...+ +. |+|+- . .|||.....+ .++...+.||||||+++..
T Consensus 205 ~~~l~~~~~--~~~~d~~~g-----~-~~T~~~~~n~~~~~t~~~~~~~rID~I~~~~~~ 256 (301)
T 1zwx_A 205 YHDMLKLLN--VSSPANFNG-----Q-MATWDPTTNSMLKESYPKAAPEYLDYIFVENGH 256 (301)
T ss_dssp HHHHHHHHT--BCCCTTCCT-----T-SCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTS
T ss_pred HHHHHHHcC--CCCCccccC-----C-CceECCccCccccccCCCCCcceEeEEEEeCCC
Confidence 334444444 55 88772 2 2777431110 1122357899999999875
No 20
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=1e-19 Score=188.53 Aligned_cols=259 Identities=19% Similarity=0.215 Sum_probs=138.7
Q ss_pred CEEEEeeccccccc--------ccchhHHHHHHHhcCCcEEEEeccccccccchhhhHh-hcCCeEEeeccCCCCCCCCC
Q 006757 1 MKIVTYNVNGLRQR--------VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVM-ADGYESFFSCTRTSDKGRTG 71 (632)
Q Consensus 1 mKIlSwNVnGlr~~--------~~r~~~l~~~L~~~~aDIIcLQETk~~~~~l~~~l~~-~~GY~~~fs~~~~~~~gr~G 71 (632)
|||+||||+..+.. ..|...|.++|...+||||||||+... .+ ..+.. ..+|..+.. .+. .+...
T Consensus 7 lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~--~~-~~l~~~l~~y~~~~~-~~~--~g~~~ 80 (298)
T 3mpr_A 7 LTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLH--QL-KDMKEALPGYDYIGV-GRD--DGKDK 80 (298)
T ss_dssp EEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHH--HH-HHHHHHSTTEEEECC-CTT--TSSSS
T ss_pred EEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHH--HH-HHHHHhCCCCcEEEE-ecC--CCCCC
Confidence 69999999765431 123346999999999999999999632 22 22222 246765443 211 12122
Q ss_pred cceEEEEEeecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccC-CCCcEE-EEe------eceEEEE
Q 006757 72 YSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKID-SEGRCV-ITD------HGHFILF 143 (632)
Q Consensus 72 ysGVAIl~R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D-~eGR~v-iv~------~~~~~Li 143 (632)
..|+|||+|.. ..|+.....+. +.. .|.... ..++ ...|.+ .+. ...|.|+
T Consensus 81 g~~~aily~~s--------r~~i~~~~~~~-l~~--~p~~~~----------~~~~~~~~R~~~~~~~~~~~~g~~~~v~ 139 (298)
T 3mpr_A 81 GEHSAIFYRTD--------KFDIVEKGDFW-LSE--TPDVPS----------KGWDAVLPRICSWGHFKCKDTGFEFLFF 139 (298)
T ss_dssp SCBCCEEEETT--------TEEEEEEEEEE-SSS--STTSSC----------CCTTCSSCCEEEEEEEEETTTCCEEEEE
T ss_pred CceeEEEEecC--------ceEEEeccEEE-ccC--CCCccC----------cccccccCceeEEEEEEEcCCCCEEEEE
Confidence 23599996542 12443322210 000 000000 0011 234533 222 2469999
Q ss_pred EEEcCCCCCCchHhHHHHHHHHHHHHHHHHHHHh-cCCcEEEeCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHhcCC
Q 006757 144 NVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC-QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG 222 (632)
Q Consensus 144 nVY~P~~~~~~~er~~fk~~f~~~L~~~i~~l~~-~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~ 222 (632)
|+|++.... ..|...+..|...++.+.. .+.+|||+||||..+.. ..++.+. .. +
T Consensus 140 ~~Hl~~~~~------~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~----------------~~~~~l~-~~-g 195 (298)
T 3mpr_A 140 NLHMDHIGK------KARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQTH----------------QSYDAFV-SK-G 195 (298)
T ss_dssp EEECCSSCH------HHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTS----------------HHHHHHH-TT-S
T ss_pred EecCCCCCH------HHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------------HHHHHHh-cC-C
Confidence 999986431 2344556666666665432 56899999999976532 1233333 22 2
Q ss_pred ceEeeccccCCCCCCcccccCCCCCCcccCccceeEEEEEeCCCcccccccccccccccceeeeEeecccccC-------
Q 006757 223 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW------- 295 (632)
Q Consensus 223 ~L~D~~R~~hP~~~~~yT~~s~~~~a~~~n~gsRIDyIL~s~~~l~~~~~l~dh~~~~~~v~~~~I~~~~~~~------- 295 (632)
.|.|+|+..++.....+||...... ...+.||||||+++.+ .+.++.|+....+.
T Consensus 196 ~l~D~~~~~~~~~~~~~T~~~~~~~---~~~~~rID~Il~s~~~---------------~v~~~~v~~~~~~~~~~~~~~ 257 (298)
T 3mpr_A 196 VLCDSYEKCDYRYALNGTFNNFDPN---SFTESRIDHIFVSPSF---------------HVKRYGVLTDTYRSVRENSKK 257 (298)
T ss_dssp SSEEHHHHCSEEECSSCSBCTTCTT---CCCSCCCEEEEECTTS---------------EEEEEEECCCCEEEECC----
T ss_pred cchhhHhhhcccCCCCCCccCCCCC---CCCCceEEEEEeCCCe---------------eEEEEEEecCccccCCCcccc
Confidence 5999998876432223677554321 1247899999999875 45666665421110
Q ss_pred -CCCCCCCccccCCCCCCCCCCCccceEEEEecCC
Q 006757 296 -KPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVP 329 (632)
Q Consensus 296 -~~~~~~~~~W~~~~~~~~~~SDH~PV~~~l~~~~ 329 (632)
...+.+ ..+.+........|||+||+++|+...
T Consensus 258 ~~~~~~~-~~~~~~~~~~~~~SDH~PV~v~~~~~~ 291 (298)
T 3mpr_A 258 EDVRDCP-EEITIKAYEARTPSDHFPVKVELVFDL 291 (298)
T ss_dssp -------------CCEEEECSSSBCCEEEEEEECS
T ss_pred cCcccch-hhhccChhhcccCCCCCcEEEEEecch
Confidence 000000 001111111235799999999998754
No 21
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.83 E-value=7e-20 Score=188.99 Aligned_cols=216 Identities=15% Similarity=0.113 Sum_probs=115.5
Q ss_pred CEEEEeeccccccc-------ccchhHHHHHHHhcCCcEEEEeccccccc--cchhhhHhhcCC---------------e
Q 006757 1 MKIVTYNVNGLRQR-------VSQFGSLRKLLDSFDADIICFQETKLRRQ--ELKSDLVMADGY---------------E 56 (632)
Q Consensus 1 mKIlSwNVnGlr~~-------~~r~~~l~~~L~~~~aDIIcLQETk~~~~--~l~~~l~~~~GY---------------~ 56 (632)
|||+||||++++.. ..|...+...+...+||||||||+..... .+.+.+ ..+| +
T Consensus 10 lrv~t~Ni~~~~~~~~~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l--~~~~~~~~~~~~~~~~~~~~ 87 (306)
T 2ddr_A 10 LKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNL--KKEYPNQTAVLGRSSGSEWD 87 (306)
T ss_dssp EEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHH--TTTCCEECCCTTSCCSTTSS
T ss_pred EEEEEEECccCcccccCCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHH--hhhCCceeeccCcccccccc
Confidence 69999999988531 12222355556778999999999965321 121111 1223 2
Q ss_pred EEeeccCCCCCCCCCcceEEEEEeecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccC-CCCcE-EE
Q 006757 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKID-SEGRC-VI 134 (632)
Q Consensus 57 ~~fs~~~~~~~gr~GysGVAIl~R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D-~eGR~-vi 134 (632)
..+.... ....+..|||||+|. |+.....+. +.. . ...| .++|. +.
T Consensus 88 ~~~~~~~---~~~~~~~G~ailSr~-----------pi~~~~~~~-~~~--------~---------~~~~~~~~r~~~~ 135 (306)
T 2ddr_A 88 KTLGNYS---SSTPEDGGVAIVSKW-----------PIAEKIQYV-FAK--------G---------CGPDNLSNKGFVY 135 (306)
T ss_dssp EEEESCC---TTCSSCCCCEEEESS-----------CEEEEEEEE-CSC--------C---------C----CCCCEEEE
T ss_pred ccccccc---ccCccCCeEEEEECC-----------CcccccEEE-cCC--------C---------CCcchhcCCCeEE
Confidence 2221110 112344699999997 443322110 000 0 0001 13443 33
Q ss_pred Eee----ceEEEEEEEcCCCCCCc--hHhHHHHHHHHHHHHHHHHHH-HhcCCcEEEeCCCCCCCCccccCCCCCCCchh
Q 006757 135 TDH----GHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN 207 (632)
Q Consensus 135 v~~----~~~~LinVY~P~~~~~~--~er~~fk~~f~~~L~~~i~~l-~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~ 207 (632)
+.+ ..+.|+|+|+++..... ......|..+++.|..+++.. ...+.++||+||||..+...|... . .
T Consensus 136 ~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~~d~~~-----s-~ 209 (306)
T 2ddr_A 136 TKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNN-----D-S 209 (306)
T ss_dssp EEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCT-----T-S
T ss_pred EEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCcccccccC-----C-H
Confidence 332 46999999998764210 123445677777787777765 234679999999999876554311 1 1
Q ss_pred HHHHHHHHHHHhcCCceEeeccccCCCCCCcccccCCCCC----CcccCccceeEEEEEeCCCc
Q 006757 208 EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG----AEQFNYGTRIDHILCAGPCL 267 (632)
Q Consensus 208 ~~r~~l~~lL~~~g~~L~D~~R~~hP~~~~~yT~~s~~~~----a~~~n~gsRIDyIL~s~~~l 267 (632)
.++.++...+ +.|. . +... .|||...... .++...+.||||||+++.+.
T Consensus 210 ----~~~~l~~~~~--~~~~--~--~~g~-~~T~~~~~n~~~~~t~~~~~~~rID~I~~s~~~~ 262 (306)
T 2ddr_A 210 ----EYASMFKTLN--ASVP--S--YTGH-TATWDATTNSIAKYNFPDSPAEYLDYIIASKDHA 262 (306)
T ss_dssp ----HHHHHHHHHT--BCCC--E--EEEC-SCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTSC
T ss_pred ----HHHHHHHhcC--CCCc--c--cCCC-CcccCCCCCccccccCCCCCcceeeEEEEeCCCC
Confidence 2334444443 5442 1 1112 3787432110 11223478999999998753
No 22
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.80 E-value=5.1e-19 Score=185.53 Aligned_cols=210 Identities=17% Similarity=0.197 Sum_probs=116.6
Q ss_pred CEEEEeecccccc-------cccchhHHHHHHHhcCCcEEEEecccccc--ccchhhhHhhcCCeEEeeccCCCCCCCCC
Q 006757 1 MKIVTYNVNGLRQ-------RVSQFGSLRKLLDSFDADIICFQETKLRR--QELKSDLVMADGYESFFSCTRTSDKGRTG 71 (632)
Q Consensus 1 mKIlSwNVnGlr~-------~~~r~~~l~~~L~~~~aDIIcLQETk~~~--~~l~~~l~~~~GY~~~fs~~~~~~~gr~G 71 (632)
|||+||||+++.. ...|...+..++...+||||||||+.... ..+.+.+ ...|...+.... .++.+
T Consensus 30 lrV~T~Ni~~~~~~~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L--~~~~py~~~~~g---~~~~~ 104 (317)
T 3i41_A 30 LKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNV--KKEYPYQTPVLG---RSQSG 104 (317)
T ss_dssp CCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHT--TTTCCEECCCTT---SCSTT
T ss_pred eEEEEEecccCccccCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHH--HHhCCcccccCC---ccccC
Confidence 7999999998742 12233345666667899999999996432 2222222 222432221110 11111
Q ss_pred -------c-------ceEEEEEeecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccC-CCCcEE-EE
Q 006757 72 -------Y-------SGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKID-SEGRCV-IT 135 (632)
Q Consensus 72 -------y-------sGVAIl~R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D-~eGR~v-iv 135 (632)
| .|++||+|. |+.....+. +.. .. ..| .+.|.+ .+
T Consensus 105 ~~~~~~~y~~~~~~~~G~~ilSr~-----------Pi~~~~~~~-~~~--------~~---------~~d~~~~r~~~~~ 155 (317)
T 3i41_A 105 WDKTEGSYSSTVAEDGGVAIVSKY-----------PIKEKIQHV-FKS--------GC---------GFDNDSNKGFVYT 155 (317)
T ss_dssp CSEEEESCCSSCSBCCCCEEEESS-----------CEEEEEEEE-CSC--------CC---------SSGGGBCCEEEEE
T ss_pred ccCcccccccccccCCccEEEeCC-----------CCccceeEE-CCC--------CC---------CcccccCcceEEE
Confidence 1 499999998 443322110 000 00 001 123332 22
Q ss_pred e----eceEEEEEEEcCCCCCCc--hHhHHHHHHHHHHHHHHHHHH-HhcCCcEEEeCCCCCCCCccccCCCCCCCchhH
Q 006757 136 D----HGHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNE 208 (632)
Q Consensus 136 ~----~~~~~LinVY~P~~~~~~--~er~~fk~~f~~~L~~~i~~l-~~~g~~VII~GDFN~~~~~iD~~~~~~~~~~~~ 208 (632)
. ...|.|+|+|+++..... ......|...+..|..+++.. ...+.+|||+||||..+..
T Consensus 156 ~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s-------------- 221 (317)
T 3i41_A 156 KIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGT-------------- 221 (317)
T ss_dssp EEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTS--------------
T ss_pred EEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCC--------------
Confidence 2 246999999998765310 133456777788888888775 3357899999999986642
Q ss_pred HHHHHHHHHHhcCCceEeeccccCCCCCCcccccCCCCC----CcccCccceeEEEEEeCCCc
Q 006757 209 FRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG----AEQFNYGTRIDHILCAGPCL 267 (632)
Q Consensus 209 ~r~~l~~lL~~~g~~L~D~~R~~hP~~~~~yT~~s~~~~----a~~~n~gsRIDyIL~s~~~l 267 (632)
..++.++...+ +.|.-. .. . .|||+..... .++.+...||||||++..+.
T Consensus 222 --~~~~~l~~~l~--l~~~~~-~g---~-~~t~d~~~n~~~~~~~p~~~~~rLDyIlvs~~~~ 275 (317)
T 3i41_A 222 --PEFKDMLKNLN--VNDVLY-AG---H-NSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHK 275 (317)
T ss_dssp --HHHHHHHHHHT--BCCCEE-EE---C-SCSBCTTTCHHHHHHCTTCCCBCCEEEEEBTTSC
T ss_pred --HHHHHHHHhcC--CCCccc-CC---C-CcccCCCCCccccccCCCCCCcceEEEEEeCCcC
Confidence 12334444443 666521 11 1 3677654321 22334567999999999864
No 23
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.72 E-value=1e-16 Score=173.31 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=52.3
Q ss_pred CEEEEeeccccc---------------ccccchhHHHHHHHhcCCcEEEEecccccc--ccchhhhHhhcCCeEEeecc-
Q 006757 1 MKIVTYNVNGLR---------------QRVSQFGSLRKLLDSFDADIICFQETKLRR--QELKSDLVMADGYESFFSCT- 62 (632)
Q Consensus 1 mKIlSwNVnGlr---------------~~~~r~~~l~~~L~~~~aDIIcLQETk~~~--~~l~~~l~~~~GY~~~fs~~- 62 (632)
|||+||||..-. ....|+..|.++|...+||||||||++... +.+ ...+...||..+|...
T Consensus 32 ~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~q~~~~l-~~~L~~~gY~~v~~~k~ 110 (398)
T 3ngq_A 32 FTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLF-LPALKERGYDGFFSPKS 110 (398)
T ss_dssp EEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTH-HHHHHHTTEEEEEEESC
T ss_pred EEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccHHHHHHHH-HHHHHhCCceEEEecCC
Confidence 589999996411 112233469999999999999999997532 223 2334567999877532
Q ss_pred CCC---CCCCCCcceEEEEEeec
Q 006757 63 RTS---DKGRTGYSGVATFCRVK 82 (632)
Q Consensus 63 ~~~---~~gr~GysGVAIl~R~~ 82 (632)
+.. ..++.++.|||||+|..
T Consensus 111 r~~~~~~~~~~~~eG~AIfyr~~ 133 (398)
T 3ngq_A 111 RAKIMSEQERKHVDGCAIFFKTE 133 (398)
T ss_dssp TTSCCCHHHHHTCEEEEEEEETT
T ss_pred CccccccccccCcceeEEEEECC
Confidence 100 00123567999999873
No 24
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=6.2e-16 Score=179.77 Aligned_cols=81 Identities=21% Similarity=0.406 Sum_probs=34.2
Q ss_pred CEEEEeeccc--cc-------------ccccchhHHHHHHHhcCCcEEEEecccccc-ccchhhhHhhcCCeEEeeccCC
Q 006757 1 MKIVTYNVNG--LR-------------QRVSQFGSLRKLLDSFDADIICFQETKLRR-QELKSDLVMADGYESFFSCTRT 64 (632)
Q Consensus 1 mKIlSwNVnG--lr-------------~~~~r~~~l~~~L~~~~aDIIcLQETk~~~-~~l~~~l~~~~GY~~~fs~~~~ 64 (632)
+++++|||.. +. ....|+..|.++|..++||||||||+.... ..+....+...||..+|.....
T Consensus 395 ~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~~~~~ 474 (727)
T 4b8c_D 395 FTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFHAKAR 474 (727)
T ss_dssp -------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC-----
T ss_pred eeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEeccCC
Confidence 4688999964 11 111233468999999999999999996421 1222223445689887732210
Q ss_pred C----CCCCCCcceEEEEEee
Q 006757 65 S----DKGRTGYSGVATFCRV 81 (632)
Q Consensus 65 ~----~~gr~GysGVAIl~R~ 81 (632)
. ..+..++.|||||+|.
T Consensus 475 ~~~~~~~~~~~~~G~AI~y~~ 495 (727)
T 4b8c_D 475 AKTMHSKDSKKVDGCCIFFKR 495 (727)
T ss_dssp -----------CCCCEEEC--
T ss_pred cccccccCCCCcccEEEEEEc
Confidence 0 0112345699999765
No 25
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.51 E-value=9.3e-14 Score=140.82 Aligned_cols=78 Identities=18% Similarity=0.206 Sum_probs=42.5
Q ss_pred CEEEEeecccccccccchhHHHHHHHhc--CCcEEEEeccccccc-cch---hhhHh--hcCCeEEeeccCCCCCCC-CC
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF--DADIICFQETKLRRQ-ELK---SDLVM--ADGYESFFSCTRTSDKGR-TG 71 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~~--~aDIIcLQETk~~~~-~l~---~~l~~--~~GY~~~fs~~~~~~~gr-~G 71 (632)
|||+||||..+.....+...+.+.|... +||||||||+.-... .+. +.+.. ..+|..+.... .+. .+
T Consensus 1 lrv~s~NI~~~g~~~~~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~l~~~L~~~~~~~y~~v~~~~----~~~~~~ 76 (260)
T 2a40_B 1 LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEP----LGRNSY 76 (260)
T ss_dssp CEEEEEEEEEESHHHHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCC----BCSSSC
T ss_pred CEEEEEehhhhCCCccchHHHHHHHHHHhccCCEEEEEEEEcCchhHHHHHHHHHHhccCCCcEEEEccc----CCCCCC
Confidence 7999999986532211111244444443 899999999964311 121 11111 13477665432 121 12
Q ss_pred cceEEEEEeec
Q 006757 72 YSGVATFCRVK 82 (632)
Q Consensus 72 ysGVAIl~R~~ 82 (632)
..++++++|.+
T Consensus 77 ~~~~~~ly~~~ 87 (260)
T 2a40_B 77 KERYLFLFRPN 87 (260)
T ss_dssp CBEEEEEECTT
T ss_pred cEEEEEEEcCc
Confidence 23689998873
No 26
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.49 E-value=1.8e-13 Score=137.71 Aligned_cols=150 Identities=15% Similarity=0.185 Sum_probs=85.2
Q ss_pred CEEEEeecccccccccc--hhHHHHHHHhcC-CcEEEEeccccc--------c----ccc-hhhhHhhcC------CeEE
Q 006757 1 MKIVTYNVNGLRQRVSQ--FGSLRKLLDSFD-ADIICFQETKLR--------R----QEL-KSDLVMADG------YESF 58 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r--~~~l~~~L~~~~-aDIIcLQETk~~--------~----~~l-~~~l~~~~G------Y~~~ 58 (632)
+||+|||++|-...... ...+.++|...+ +|||.|||+-.- + ... ..+++...| +.++
T Consensus 16 ~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~E~~w~lGt~srp~~~yi 95 (262)
T 2f1n_A 16 FRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNSRPQQVYI 95 (262)
T ss_dssp CCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEECCSSSSSCEEEE
T ss_pred eEEEEEEcCCCCCCCcccccccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCHHHHHHHhCCCCCCceEEE
Confidence 58999999996542221 124888999988 999999999622 1 000 011222333 5443
Q ss_pred eeccCCCCCCCCCcceEEEEEeecCCCCCcccccceeeeecccCcccccCcccccCccccchhhhcccCCCCcEEEEeec
Q 006757 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHG 138 (632)
Q Consensus 59 fs~~~~~~~gr~GysGVAIl~R~~~~f~~~~~~~Pi~~e~gltg~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~viv~~~ 138 (632)
|..... . ..++.|+||++|.+ +. +.+. +.. ........+.++.+
T Consensus 96 Y~~~~D--~-~~~r~nlAIlSr~~-----------ad--ev~v-Lp~-------------------~~~~~Rp~lgiri~ 139 (262)
T 2f1n_A 96 YFSAVD--A-LGGRVNLALVSNRR-----------AD--EVFV-LSP-------------------VRQGGRPLLGIRIG 139 (262)
T ss_dssp EEECSC--S-SSCSSCEEEEESSC-----------CS--EEEE-ECC-------------------SSTTCCCEEEEEET
T ss_pred EEeecc--C-CCCceeeEEEEccc-----------cc--ceEE-CCC-------------------CCCCCCceEEEEEC
Confidence 332211 1 23456999999984 22 1110 000 00113344457778
Q ss_pred eEEEEEEEcCCCCCCchHhHHHHHHHHHHHHHHHHHHHhcC-----CcEEEeCCCCCCCCc
Q 006757 139 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG-----RRIFVVGDLNIAPAA 194 (632)
Q Consensus 139 ~~~LinVY~P~~~~~~~er~~fk~~f~~~L~~~i~~l~~~g-----~~VII~GDFN~~~~~ 194 (632)
.++++|+|+-..+. .++.. ..+.+.+++.. ... .++||+||||..+..
T Consensus 140 ~~~ff~tHa~a~~g--~da~a----~v~~I~~~~~~--~~~~~~~~~pwii~GDFNr~P~s 192 (262)
T 2f1n_A 140 NDAFFTAHAIAMRN--NDAPA----LVEEVYNFFRD--SRDPVHQALNWMILGDFNREPAD 192 (262)
T ss_dssp TEEEEEEECCSSSS--CSHHH----HHHHHHHHHHT--CSSHHHHTCEEEEEEECSSCHHH
T ss_pred CEEEEEEEecCCCC--ccHHH----HHHHHHHHHhc--CcccccCCCcEEEEecCCCCCcc
Confidence 89999999987643 33432 23333333332 123 499999999987654
No 27
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.44 E-value=1.8e-12 Score=131.47 Aligned_cols=40 Identities=30% Similarity=0.357 Sum_probs=30.1
Q ss_pred CEEEEeecccccccc--cchhHHHHHHHh-cCCcEEEEecccc
Q 006757 1 MKIVTYNVNGLRQRV--SQFGSLRKLLDS-FDADIICFQETKL 40 (632)
Q Consensus 1 mKIlSwNVnGlr~~~--~r~~~l~~~L~~-~~aDIIcLQETk~ 40 (632)
+||+||||.|-...- ++...+.++|.. .++|||+|||+..
T Consensus 5 ~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIlaLQEa~~ 47 (261)
T 1sr4_B 5 FKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGS 47 (261)
T ss_dssp SCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCS
T ss_pred cEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEEEEecCCC
Confidence 689999998843311 211248999999 8899999999964
No 28
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.25 E-value=1.8e-10 Score=122.29 Aligned_cols=34 Identities=35% Similarity=0.480 Sum_probs=26.9
Q ss_pred CEEEEeecccccccccchhHHHHHHHh---cCCcE--EEEecc
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDS---FDADI--ICFQET 38 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~---~~aDI--IcLQET 38 (632)
|.|+||||+|... .. .|.++|.. ..||| |||||.
T Consensus 27 i~v~TwNv~g~~~--~~--~l~~~L~~~~~~~~DI~viglQEi 65 (347)
T 1i9z_A 27 IFVASYNLNGCSA--TT--KLENWLFPENTPLADIYVVGFQEI 65 (347)
T ss_dssp EEEEEEECTTCCC--CS--CCHHHHSCSSSCCCSEEEEEEECS
T ss_pred EEEEeEecCCCCC--ch--hHHHHhccccCCCCCEEEEEeEEe
Confidence 4789999999764 22 38888874 67999 899997
No 29
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.22 E-value=2.2e-11 Score=125.82 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=26.2
Q ss_pred CEEEEeecccccccccchhHHHHHHH---hcCCcE--EEEeccccc
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLD---SFDADI--ICFQETKLR 41 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~---~~~aDI--IcLQETk~~ 41 (632)
|+|+||||++.... . .+.+++. ...||| |||||....
T Consensus 9 i~V~T~Nv~~~~~~-~---~l~~wl~~~~~~~pDI~viglQEv~~~ 50 (282)
T 2imq_X 9 VHTVSWNSGHERAP-T---NLEELLGLNSGETPDVIAVAVQGFGFQ 50 (282)
T ss_dssp EEEEEEEEETCCCC-S---CCHHHHTCTTSCCCSEEEEEEEESCTT
T ss_pred EEEEEEeCCCCcCc-h---hHHHHhcccccCCCCEEEEEeeeeccc
Confidence 58999999876432 2 2555555 678996 599999654
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.02 E-value=3.7e-09 Score=112.53 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=42.6
Q ss_pred CEEEEeecccccccccchhHHHHHHH----hcCCcE--EEEeccccccccchhhhHhhc--CCeEEeeccCCCCCCCCCc
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLD----SFDADI--ICFQETKLRRQELKSDLVMAD--GYESFFSCTRTSDKGRTGY 72 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~----~~~aDI--IcLQETk~~~~~l~~~l~~~~--GY~~~fs~~~~~~~gr~Gy 72 (632)
|.|+||||||.+.+... |.++|. ...+|| |+|||+...+......+.... +|..+.+. .-+.
T Consensus 28 i~v~TwNv~g~~~~~~~---L~~~l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~~~Y~~v~s~-------~l~g 97 (357)
T 2xsw_A 28 LFVATWNMQGQKELPPS---LDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSSA-------AHGV 97 (357)
T ss_dssp EEEEEEECTTCSSCCSC---CHHHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEEEEE-------EETT
T ss_pred EEEEEEecCCCCCCccc---HHHHhccccccCCCCEEEEEeeeccchHHHHHHHHHHHhCCcccchhhh-------hhhh
Confidence 47899999997543332 566664 256896 889999755333322232223 34332221 1233
Q ss_pred ceEEEEEeec
Q 006757 73 SGVATFCRVK 82 (632)
Q Consensus 73 sGVAIl~R~~ 82 (632)
.+++||+|.+
T Consensus 98 ~~l~Vfvr~~ 107 (357)
T 2xsw_A 98 LYMSLFIRRD 107 (357)
T ss_dssp EEEEEEEEGG
T ss_pred EEEEEEEchH
Confidence 5789999985
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=98.79 E-value=2e-07 Score=97.09 Aligned_cols=37 Identities=38% Similarity=0.477 Sum_probs=28.8
Q ss_pred CEEEEeecccccccccchhHHHHHHHh--cCCc--EEEEeccccc
Q 006757 1 MKIVTYNVNGLRQRVSQFGSLRKLLDS--FDAD--IICFQETKLR 41 (632)
Q Consensus 1 mKIlSwNVnGlr~~~~r~~~l~~~L~~--~~aD--IIcLQETk~~ 41 (632)
|.|+||||||.+.+ . .|.++|.. ..|| ||+|||+.+.
T Consensus 10 i~v~TwNvng~~~~-~---~l~~wL~~~~~~pDI~viGlQE~~l~ 50 (313)
T 3mtc_A 10 FFAGTYNVNGQSPK-E---CLRLWLSNGIQAPDVYCVGFQELDLS 50 (313)
T ss_dssp EEEEEEECTTCCCC-S---CTHHHHSSSCCCCSEEEEEEECSCCS
T ss_pred EEEEEEEcCCccCc-h---hHHHHhcccCCCCCeEEEEEEecccc
Confidence 35789999998653 2 38888876 6799 7999999764
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.43 E-value=9.2e-06 Score=84.69 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=39.9
Q ss_pred EEEEeecccccccccchhHHHHHHHh-------------cCCcEE--EEeccccccccchhhh---Hh---hcCCeEEee
Q 006757 2 KIVTYNVNGLRQRVSQFGSLRKLLDS-------------FDADII--CFQETKLRRQELKSDL---VM---ADGYESFFS 60 (632)
Q Consensus 2 KIlSwNVnGlr~~~~r~~~l~~~L~~-------------~~aDII--cLQETk~~~~~l~~~l---~~---~~GY~~~fs 60 (632)
-|.||||||... .. .|..||.. ..+||+ +|||.-.......+.+ +. ...|....+
T Consensus 11 ~vgTwNv~g~~p-~~---~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s 86 (316)
T 4a9c_A 11 FIGTWNMGSVPP-PK---NVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAM 86 (316)
T ss_dssp EEEEEECTTSCC-CS---CCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred EEEEeEcCCcCC-Cc---chhHhhcccccccCcccccccCCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEe
Confidence 578999999643 22 27777753 347876 8999854322211111 11 135665544
Q ss_pred ccCCCCCCCCCcceEEEEEeec
Q 006757 61 CTRTSDKGRTGYSGVATFCRVK 82 (632)
Q Consensus 61 ~~~~~~~gr~GysGVAIl~R~~ 82 (632)
.. -+.-.++||+|..
T Consensus 87 ~~-------L~gi~l~Vfvk~~ 101 (316)
T 4a9c_A 87 QS-------LWNIKVAVLVKPE 101 (316)
T ss_dssp EE-------ETTEEEEEEECGG
T ss_pred ee-------ehheeeeeEEeHH
Confidence 21 2334788888874
No 33
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=76.34 E-value=1.3 Score=31.01 Aligned_cols=35 Identities=34% Similarity=0.898 Sum_probs=26.1
Q ss_pred CCCCCCCCCccceeeeecCCCCCCCeeeeeccCCCCCCCCCCCCCCcee
Q 006757 575 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 623 (632)
Q Consensus 575 ~~p~c~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~~f~ 623 (632)
..|.|. -+|.|.+| | |+-.||. |.=|.| ..||||+
T Consensus 3 ~~P~Cd-~GeqCAvR---k-G~Rigkl---C~C~rg------~~Cn~fl 37 (41)
T 1hy9_A 3 QVPMCD-AGEQCAVR---K-GARIGKL---CDCPRG------TSCNSFL 37 (41)
T ss_dssp CCCBCC-SSSCSEEE---C-SSSEEEC---CBCCTT------CCBCTTT
T ss_pred cCCcCC-ccchhhhh---c-ccccchh---cCCCCC------Ccchhhh
Confidence 479999 99999754 4 8888874 443433 7899996
No 34
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=29.06 E-value=13 Score=23.41 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=9.6
Q ss_pred CccccccccccC
Q 006757 467 GQLSLKSFFHKR 478 (632)
Q Consensus 467 ~q~~l~~fF~~~ 478 (632)
|-.+|-+||++=
T Consensus 8 g~~TLesFFK~L 19 (26)
T 2zvk_U 8 GMQTLESFFKPL 19 (26)
T ss_pred ccccHHHHhccC
Confidence 445999999984
Done!