Query 006758
Match_columns 632
No_of_seqs 266 out of 2619
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 14:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0111 SerA Phosphoglycerate 100.0 2.6E-64 5.6E-69 531.2 31.8 281 54-342 40-324 (324)
2 COG1052 LdhA Lactate dehydroge 100.0 3.8E-63 8.2E-68 522.3 33.0 315 19-339 2-324 (324)
3 PRK15409 bifunctional glyoxyla 100.0 6.5E-63 1.4E-67 520.7 34.1 314 18-339 1-321 (323)
4 PRK08410 2-hydroxyacid dehydro 100.0 8.4E-62 1.8E-66 509.7 31.9 300 22-330 3-310 (311)
5 PRK06487 glycerate dehydrogena 100.0 4.8E-61 1E-65 505.2 32.8 273 54-337 40-317 (317)
6 PRK13243 glyoxylate reductase; 100.0 6.1E-61 1.3E-65 507.5 33.2 316 18-339 1-324 (333)
7 PRK06932 glycerate dehydrogena 100.0 2.5E-60 5.5E-65 499.2 31.2 268 55-330 40-314 (314)
8 PRK11790 D-3-phosphoglycerate 100.0 1.4E-59 3E-64 509.5 35.4 310 18-339 9-328 (409)
9 PLN02306 hydroxypyruvate reduc 100.0 1.6E-59 3.5E-64 505.1 32.9 321 16-340 12-357 (386)
10 PRK07574 formate dehydrogenase 100.0 1.6E-59 3.4E-64 504.7 31.8 308 24-335 50-365 (385)
11 PLN03139 formate dehydrogenase 100.0 3E-59 6.6E-64 502.4 32.9 285 55-343 93-382 (386)
12 PLN02928 oxidoreductase family 100.0 4.8E-59 1E-63 495.6 32.9 312 15-335 14-343 (347)
13 TIGR01327 PGDH D-3-phosphoglyc 100.0 6.4E-58 1.4E-62 510.3 31.5 279 55-340 36-314 (525)
14 PRK13581 D-3-phosphoglycerate 100.0 7.3E-57 1.6E-61 501.9 32.8 278 55-340 38-315 (526)
15 PRK12480 D-lactate dehydrogena 100.0 9.1E-56 2E-60 467.6 30.8 275 54-337 40-330 (330)
16 KOG0068 D-3-phosphoglycerate d 100.0 2.3E-56 4.9E-61 462.0 24.3 310 21-341 8-324 (406)
17 PRK15469 ghrA bifunctional gly 100.0 1.3E-54 2.9E-59 455.6 31.7 270 57-342 36-312 (312)
18 PRK08605 D-lactate dehydrogena 100.0 2.3E-54 5E-59 457.1 30.3 275 55-337 41-332 (332)
19 PRK00257 erythronate-4-phospha 100.0 3.4E-54 7.4E-59 462.9 31.5 280 21-334 2-285 (381)
20 PRK15438 erythronate-4-phospha 100.0 3.3E-54 7.1E-59 462.2 30.5 273 21-326 2-278 (378)
21 KOG0069 Glyoxylate/hydroxypyru 100.0 4.2E-53 9E-58 444.5 25.2 274 57-335 58-333 (336)
22 PRK06436 glycerate dehydrogena 100.0 3.7E-52 8E-57 435.6 28.9 262 57-345 32-296 (303)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 5.7E-44 1.2E-48 346.2 13.4 177 123-304 1-178 (178)
24 KOG0067 Transcription factor C 100.0 2.7E-43 5.8E-48 368.2 7.2 398 15-598 27-435 (435)
25 PTZ00075 Adenosylhomocysteinas 99.8 1.1E-18 2.3E-23 192.1 16.8 156 102-288 213-368 (476)
26 TIGR02853 spore_dpaA dipicolin 99.8 2.2E-18 4.8E-23 179.9 11.0 155 69-257 80-243 (287)
27 PF00389 2-Hacid_dh: D-isomer 99.7 5.9E-17 1.3E-21 149.7 12.4 98 22-122 1-101 (133)
28 PRK08306 dipicolinate synthase 99.5 4.2E-14 9.2E-19 148.3 13.4 169 55-256 51-243 (296)
29 PLN02494 adenosylhomocysteinas 99.5 2.6E-14 5.6E-19 157.5 11.4 120 160-285 252-374 (477)
30 TIGR00936 ahcY adenosylhomocys 99.4 5E-13 1.1E-17 145.8 12.7 119 160-283 193-312 (406)
31 PRK13403 ketol-acid reductoiso 99.4 3E-13 6.6E-18 143.1 8.4 93 158-252 12-104 (335)
32 PF03446 NAD_binding_2: NAD bi 99.3 1.3E-12 2.9E-17 125.1 7.3 117 163-281 2-119 (163)
33 COG2084 MmsB 3-hydroxyisobutyr 99.3 8.3E-12 1.8E-16 130.5 9.8 116 163-280 1-119 (286)
34 PRK05476 S-adenosyl-L-homocyst 99.2 1.8E-11 3.9E-16 134.4 9.9 141 102-266 171-312 (425)
35 TIGR01505 tartro_sem_red 2-hyd 99.2 4.2E-11 9E-16 124.4 9.3 114 164-279 1-116 (291)
36 PRK11559 garR tartronate semia 99.2 8.4E-11 1.8E-15 122.2 9.3 116 163-280 3-120 (296)
37 PRK15461 NADH-dependent gamma- 99.2 9.3E-11 2E-15 122.8 9.6 116 164-281 3-120 (296)
38 PRK12490 6-phosphogluconate de 99.1 1.3E-10 2.8E-15 121.7 9.9 114 164-280 2-118 (299)
39 PF00670 AdoHcyase_NAD: S-aden 99.1 9.9E-11 2.1E-15 113.2 6.8 102 159-265 20-122 (162)
40 PRK09599 6-phosphogluconate de 99.1 4E-10 8.7E-15 118.1 9.7 114 164-280 2-118 (301)
41 PLN02256 arogenate dehydrogena 99.0 1.7E-09 3.7E-14 114.2 11.4 109 160-270 34-143 (304)
42 PLN02350 phosphogluconate dehy 99.0 1.3E-09 2.8E-14 122.0 9.3 114 164-280 8-131 (493)
43 PRK05479 ketol-acid reductoiso 99.0 7.5E-10 1.6E-14 118.2 6.9 96 158-256 13-109 (330)
44 PLN02712 arogenate dehydrogena 99.0 1.7E-09 3.6E-14 125.2 9.9 113 156-270 363-476 (667)
45 PRK15059 tartronate semialdehy 98.9 2.8E-09 6E-14 111.8 10.0 114 164-280 2-117 (292)
46 cd00401 AdoHcyase S-adenosyl-L 98.9 3.1E-09 6.6E-14 116.6 9.2 103 159-266 199-302 (413)
47 TIGR00872 gnd_rel 6-phosphoglu 98.9 4.9E-09 1.1E-13 110.0 9.5 114 164-281 2-118 (298)
48 KOG0409 Predicted dehydrogenas 98.9 5.1E-09 1.1E-13 109.4 8.0 119 160-280 33-154 (327)
49 PTZ00142 6-phosphogluconate de 98.9 6.7E-09 1.5E-13 115.8 9.4 115 163-280 2-125 (470)
50 PLN02858 fructose-bisphosphate 98.8 7.9E-09 1.7E-13 127.7 10.6 120 161-280 3-124 (1378)
51 TIGR01692 HIBADH 3-hydroxyisob 98.8 6.4E-09 1.4E-13 108.3 8.3 112 167-280 1-114 (288)
52 PLN02858 fructose-bisphosphate 98.8 8.3E-09 1.8E-13 127.5 9.8 118 162-281 324-445 (1378)
53 PRK07417 arogenate dehydrogena 98.8 2.2E-08 4.8E-13 103.9 9.8 138 164-304 2-142 (279)
54 TIGR00873 gnd 6-phosphoglucona 98.8 1.7E-08 3.7E-13 112.6 9.4 113 165-280 2-122 (467)
55 PRK09260 3-hydroxybutyryl-CoA 98.7 9.3E-08 2E-12 99.6 12.3 129 163-302 2-155 (288)
56 PRK06545 prephenate dehydrogen 98.7 4.1E-08 8.9E-13 105.7 9.9 135 163-304 1-149 (359)
57 PRK07502 cyclohexadienyl dehyd 98.7 5.8E-08 1.3E-12 101.9 10.8 140 161-305 5-155 (307)
58 PRK08655 prephenate dehydrogen 98.7 9.1E-08 2E-12 105.9 12.1 134 163-303 1-137 (437)
59 COG0287 TyrA Prephenate dehydr 98.7 8.6E-08 1.9E-12 100.4 11.1 135 162-303 3-145 (279)
60 PRK14619 NAD(P)H-dependent gly 98.7 8.8E-08 1.9E-12 100.8 10.6 83 161-258 3-86 (308)
61 PLN02545 3-hydroxybutyryl-CoA 98.7 1.2E-07 2.5E-12 99.0 11.3 129 163-302 5-157 (295)
62 PLN02712 arogenate dehydrogena 98.6 5.5E-08 1.2E-12 112.8 8.6 108 160-269 50-158 (667)
63 PRK11199 tyrA bifunctional cho 98.6 5.5E-07 1.2E-11 97.8 15.1 91 161-267 97-188 (374)
64 TIGR00465 ilvC ketol-acid redu 98.6 6.9E-08 1.5E-12 102.7 7.9 97 160-259 1-98 (314)
65 PRK08507 prephenate dehydrogen 98.6 2.5E-07 5.5E-12 95.7 10.2 89 164-256 2-93 (275)
66 PRK07066 3-hydroxybutyryl-CoA 98.6 6.3E-07 1.4E-11 95.7 13.5 105 163-269 8-132 (321)
67 TIGR00518 alaDH alanine dehydr 98.6 3.8E-07 8.2E-12 99.0 11.8 96 159-254 164-267 (370)
68 COG0499 SAM1 S-adenosylhomocys 98.6 1.3E-07 2.9E-12 100.9 7.9 102 160-266 207-309 (420)
69 PRK05225 ketol-acid reductoiso 98.6 5.7E-08 1.2E-12 107.1 5.3 98 157-258 31-134 (487)
70 PRK07819 3-hydroxybutyryl-CoA 98.6 3.6E-07 7.9E-12 95.7 11.0 160 163-343 6-192 (286)
71 PLN02688 pyrroline-5-carboxyla 98.6 4.8E-07 1E-11 92.7 11.6 102 163-268 1-107 (266)
72 PRK08293 3-hydroxybutyryl-CoA 98.5 8.2E-07 1.8E-11 92.6 13.2 140 163-313 4-168 (287)
73 PRK08818 prephenate dehydrogen 98.5 8.7E-07 1.9E-11 96.3 13.2 120 161-302 3-130 (370)
74 PRK07530 3-hydroxybutyryl-CoA 98.5 8.9E-07 1.9E-11 92.3 12.4 138 163-313 5-167 (292)
75 cd01075 NAD_bind_Leu_Phe_Val_D 98.5 4.8E-07 1E-11 90.2 8.3 108 159-274 25-134 (200)
76 PRK06129 3-hydroxyacyl-CoA deh 98.4 1.7E-06 3.6E-11 91.2 12.1 132 163-304 3-158 (308)
77 PRK07531 bifunctional 3-hydrox 98.4 1.9E-06 4.1E-11 96.9 13.2 119 163-285 5-143 (495)
78 TIGR03026 NDP-sugDHase nucleot 98.4 2.6E-06 5.7E-11 93.2 14.0 105 164-268 2-134 (411)
79 PF07991 IlvN: Acetohydroxy ac 98.4 2.5E-07 5.5E-12 89.6 5.2 95 160-257 2-97 (165)
80 PRK15182 Vi polysaccharide bio 98.4 1.4E-06 3E-11 96.3 11.5 107 161-269 5-135 (425)
81 PRK14194 bifunctional 5,10-met 98.4 7.6E-07 1.7E-11 94.2 8.8 78 159-257 156-234 (301)
82 PF03807 F420_oxidored: NADP o 98.4 2.6E-07 5.6E-12 80.2 4.3 90 164-256 1-96 (96)
83 COG1023 Gnd Predicted 6-phosph 98.4 9.2E-07 2E-11 90.3 8.8 115 163-280 1-118 (300)
84 PRK14806 bifunctional cyclohex 98.4 9.6E-07 2.1E-11 103.2 10.3 140 163-304 4-152 (735)
85 PRK11064 wecC UDP-N-acetyl-D-m 98.4 1.5E-06 3.2E-11 95.7 11.0 107 163-270 4-135 (415)
86 cd01065 NAD_bind_Shikimate_DH 98.4 8.9E-07 1.9E-11 82.9 7.3 115 160-281 17-139 (155)
87 PRK08268 3-hydroxy-acyl-CoA de 98.4 2.8E-06 6E-11 95.9 12.3 116 163-283 8-148 (507)
88 PRK14189 bifunctional 5,10-met 98.4 1.2E-06 2.5E-11 92.2 8.6 79 159-258 155-234 (285)
89 KOG1370 S-adenosylhomocysteine 98.3 6.9E-07 1.5E-11 93.7 6.4 94 160-258 212-305 (434)
90 PRK06035 3-hydroxyacyl-CoA deh 98.3 6.4E-06 1.4E-10 86.0 13.3 116 163-282 4-146 (291)
91 PRK14618 NAD(P)H-dependent gly 98.3 1E-06 2.2E-11 93.3 7.2 103 162-270 4-123 (328)
92 PRK12491 pyrroline-5-carboxyla 98.3 1.1E-06 2.3E-11 91.6 7.0 102 163-268 3-109 (272)
93 PRK05808 3-hydroxybutyryl-CoA 98.3 7.1E-06 1.5E-10 85.2 12.8 139 163-313 4-166 (282)
94 PRK06130 3-hydroxybutyryl-CoA 98.3 6.1E-06 1.3E-10 86.7 12.4 105 163-269 5-128 (311)
95 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.3 5.8E-06 1.2E-10 93.3 13.0 118 162-284 5-147 (503)
96 PRK13302 putative L-aspartate 98.3 1.6E-06 3.4E-11 90.4 7.5 109 161-274 5-118 (271)
97 PRK00094 gpsA NAD(P)H-dependen 98.3 1.4E-06 3E-11 91.2 6.9 94 163-258 2-109 (325)
98 cd01080 NAD_bind_m-THF_DH_Cycl 98.2 3.4E-06 7.4E-11 82.3 8.3 89 159-275 41-130 (168)
99 TIGR01724 hmd_rel H2-forming N 98.2 4.4E-06 9.4E-11 89.0 9.0 93 174-270 32-129 (341)
100 PRK14188 bifunctional 5,10-met 98.2 4.6E-06 1E-10 88.2 8.8 78 159-258 155-234 (296)
101 PRK07679 pyrroline-5-carboxyla 98.2 4E-06 8.7E-11 87.1 7.8 104 162-269 3-112 (279)
102 PRK09287 6-phosphogluconate de 98.1 5.5E-06 1.2E-10 92.5 8.6 105 173-280 1-113 (459)
103 PRK14179 bifunctional 5,10-met 98.1 8.7E-06 1.9E-10 85.7 9.1 78 159-257 155-233 (284)
104 PF01488 Shikimate_DH: Shikima 98.1 1.6E-06 3.5E-11 81.0 2.6 98 159-259 9-114 (135)
105 PRK07680 late competence prote 98.1 6.3E-06 1.4E-10 85.3 6.7 102 164-269 2-109 (273)
106 PRK14175 bifunctional 5,10-met 98.1 1.3E-05 2.7E-10 84.5 8.6 78 159-257 155-233 (286)
107 PRK06476 pyrroline-5-carboxyla 98.1 6.5E-06 1.4E-10 84.4 6.4 101 164-270 2-107 (258)
108 PRK05472 redox-sensing transcr 98.0 4.3E-06 9.4E-11 83.9 4.7 134 114-270 59-201 (213)
109 PRK15057 UDP-glucose 6-dehydro 98.0 1.8E-05 3.8E-10 86.7 9.5 105 164-271 2-134 (388)
110 TIGR00561 pntA NAD(P) transhyd 98.0 6.7E-05 1.5E-09 84.8 14.1 180 59-255 64-285 (511)
111 PF01210 NAD_Gly3P_dh_N: NAD-d 97.9 1.7E-05 3.6E-10 75.9 6.6 92 164-257 1-106 (157)
112 PF10727 Rossmann-like: Rossma 97.9 9.6E-06 2.1E-10 75.9 4.6 92 161-254 9-104 (127)
113 PF02882 THF_DHG_CYH_C: Tetrah 97.9 5.7E-05 1.2E-09 73.4 9.1 79 159-258 33-112 (160)
114 cd05191 NAD_bind_amino_acid_DH 97.9 6E-05 1.3E-09 65.1 8.3 65 160-254 21-86 (86)
115 PF01262 AlaDh_PNT_C: Alanine 97.9 9.7E-06 2.1E-10 78.4 3.6 97 158-254 16-139 (168)
116 PF02737 3HCDH_N: 3-hydroxyacy 97.9 5.7E-05 1.2E-09 74.2 9.0 115 164-282 1-139 (180)
117 PRK10792 bifunctional 5,10-met 97.9 6.2E-05 1.3E-09 79.3 9.7 78 159-257 156-234 (285)
118 PRK06928 pyrroline-5-carboxyla 97.9 4E-05 8.6E-10 79.9 8.1 102 163-268 2-110 (277)
119 PRK11880 pyrroline-5-carboxyla 97.8 3.2E-05 7E-10 79.3 6.6 101 163-269 3-107 (267)
120 COG2085 Predicted dinucleotide 97.8 5.6E-05 1.2E-09 76.3 7.9 91 163-256 2-95 (211)
121 KOG2380 Prephenate dehydrogena 97.8 9.7E-05 2.1E-09 79.0 10.0 140 161-305 51-193 (480)
122 TIGR01035 hemA glutamyl-tRNA r 97.8 2.1E-05 4.6E-10 86.7 5.3 100 159-261 177-284 (417)
123 PRK14178 bifunctional 5,10-met 97.8 6E-05 1.3E-09 79.2 8.1 78 159-257 149-227 (279)
124 PRK14176 bifunctional 5,10-met 97.8 8.2E-05 1.8E-09 78.5 8.7 77 159-256 161-238 (287)
125 PRK14192 bifunctional 5,10-met 97.7 9.7E-05 2.1E-09 77.8 8.9 78 159-257 156-234 (283)
126 PRK14191 bifunctional 5,10-met 97.7 8.1E-05 1.7E-09 78.5 8.2 78 159-257 154-232 (285)
127 PF02153 PDH: Prephenate dehyd 97.7 6.3E-05 1.4E-09 77.7 6.7 126 177-304 1-133 (258)
128 cd01079 NAD_bind_m-THF_DH NAD 97.7 0.00022 4.7E-09 71.4 10.2 91 158-255 58-157 (197)
129 PF03721 UDPG_MGDP_dh_N: UDP-g 97.7 4.7E-05 1E-09 75.2 5.5 136 163-298 1-170 (185)
130 COG0686 Ald Alanine dehydrogen 97.7 7.1E-05 1.5E-09 79.3 7.0 129 158-306 164-304 (371)
131 cd05212 NAD_bind_m-THF_DH_Cycl 97.7 0.00024 5.3E-09 67.6 9.9 78 159-257 25-103 (140)
132 PRK09424 pntA NAD(P) transhydr 97.7 0.00029 6.3E-09 79.8 11.9 183 59-255 65-286 (509)
133 PRK13304 L-aspartate dehydroge 97.7 8.6E-05 1.9E-09 77.1 7.1 105 163-272 2-113 (265)
134 cd05213 NAD_bind_Glutamyl_tRNA 97.7 7.7E-05 1.7E-09 79.2 6.7 94 160-255 176-274 (311)
135 PRK06522 2-dehydropantoate 2-r 97.6 0.00017 3.7E-09 74.8 8.7 108 163-274 1-119 (304)
136 TIGR01915 npdG NADPH-dependent 97.6 0.0001 2.2E-09 74.2 6.4 92 163-257 1-104 (219)
137 PRK12557 H(2)-dependent methyl 97.6 0.00015 3.2E-09 78.3 7.9 95 174-269 32-132 (342)
138 PRK07634 pyrroline-5-carboxyla 97.6 0.0002 4.4E-09 72.3 8.2 105 161-270 3-113 (245)
139 PRK00045 hemA glutamyl-tRNA re 97.6 8.6E-05 1.9E-09 82.0 5.8 94 159-255 179-281 (423)
140 PRK08229 2-dehydropantoate 2-r 97.6 0.00016 3.5E-09 76.7 7.6 107 163-274 3-126 (341)
141 PLN00203 glutamyl-tRNA reducta 97.5 8.1E-05 1.8E-09 84.4 5.0 84 160-246 264-354 (519)
142 PRK12921 2-dehydropantoate 2-r 97.5 0.00025 5.5E-09 73.7 8.3 108 163-274 1-121 (305)
143 PRK14190 bifunctional 5,10-met 97.5 0.00036 7.8E-09 73.6 9.4 79 159-258 155-234 (284)
144 PRK14170 bifunctional 5,10-met 97.5 0.00046 1E-08 72.8 10.2 78 159-257 154-232 (284)
145 PRK14171 bifunctional 5,10-met 97.5 0.00044 9.6E-09 73.1 10.0 78 159-257 156-234 (288)
146 PRK14183 bifunctional 5,10-met 97.5 0.00032 7E-09 73.8 8.9 78 159-257 154-232 (281)
147 COG0059 IlvC Ketol-acid reduct 97.5 0.00014 3.1E-09 76.8 6.1 90 159-250 15-105 (338)
148 PTZ00431 pyrroline carboxylate 97.5 0.00041 8.8E-09 71.7 9.2 96 162-268 3-102 (260)
149 TIGR01546 GAPDH-II_archae glyc 97.5 0.00026 5.5E-09 76.3 7.7 86 165-253 1-107 (333)
150 PRK14169 bifunctional 5,10-met 97.5 0.00043 9.3E-09 73.0 9.2 78 159-257 153-231 (282)
151 PRK14186 bifunctional 5,10-met 97.5 0.00043 9.3E-09 73.5 8.8 79 159-258 155-234 (297)
152 cd05311 NAD_bind_2_malic_enz N 97.4 0.00079 1.7E-08 68.6 10.4 153 159-326 22-195 (226)
153 PRK14166 bifunctional 5,10-met 97.4 0.0005 1.1E-08 72.5 9.1 78 159-257 154-232 (282)
154 PRK14172 bifunctional 5,10-met 97.4 0.00053 1.1E-08 72.2 9.2 78 159-257 155-233 (278)
155 PRK06141 ornithine cyclodeamin 97.4 0.00027 5.8E-09 75.2 6.8 89 161-255 124-220 (314)
156 PLN02897 tetrahydrofolate dehy 97.4 0.00054 1.2E-08 73.9 9.0 78 159-257 211-289 (345)
157 PRK14177 bifunctional 5,10-met 97.4 0.00063 1.4E-08 71.8 9.2 78 159-257 156-234 (284)
158 PLN02516 methylenetetrahydrofo 97.4 0.00066 1.4E-08 72.1 9.2 78 159-257 164-242 (299)
159 PLN02616 tetrahydrofolate dehy 97.4 0.00063 1.4E-08 73.8 9.0 78 159-257 228-306 (364)
160 PRK14173 bifunctional 5,10-met 97.4 0.0007 1.5E-08 71.6 9.2 79 159-258 152-231 (287)
161 PRK14180 bifunctional 5,10-met 97.4 0.0007 1.5E-08 71.4 9.1 78 159-257 155-233 (282)
162 COG0190 FolD 5,10-methylene-te 97.4 0.00058 1.3E-08 71.7 8.3 109 159-309 153-263 (283)
163 PRK14181 bifunctional 5,10-met 97.4 0.00075 1.6E-08 71.3 9.2 78 159-257 150-232 (287)
164 PRK14187 bifunctional 5,10-met 97.3 0.00079 1.7E-08 71.4 9.1 78 159-257 157-235 (294)
165 TIGR00507 aroE shikimate 5-deh 97.3 0.00041 9E-09 71.9 6.9 115 160-281 115-237 (270)
166 PRK14174 bifunctional 5,10-met 97.3 0.00073 1.6E-08 71.7 8.6 78 159-257 156-238 (295)
167 PRK14182 bifunctional 5,10-met 97.3 0.00089 1.9E-08 70.6 9.2 79 159-258 154-233 (282)
168 PLN02353 probable UDP-glucose 97.3 0.002 4.2E-08 72.6 12.4 108 163-270 2-143 (473)
169 TIGR02354 thiF_fam2 thiamine b 97.3 0.00083 1.8E-08 67.3 8.4 95 158-253 17-144 (200)
170 COG0677 WecC UDP-N-acetyl-D-ma 97.3 0.00052 1.1E-08 74.9 7.4 118 163-281 10-156 (436)
171 COG0345 ProC Pyrroline-5-carbo 97.3 0.00038 8.3E-09 72.8 6.1 99 163-269 2-108 (266)
172 PRK14184 bifunctional 5,10-met 97.3 0.00082 1.8E-08 71.0 8.3 78 159-257 154-236 (286)
173 PRK14193 bifunctional 5,10-met 97.3 0.0011 2.3E-08 70.1 9.1 109 159-309 155-266 (284)
174 TIGR02371 ala_DH_arch alanine 97.2 0.00063 1.4E-08 72.8 7.3 91 161-257 127-225 (325)
175 PRK00258 aroE shikimate 5-dehy 97.2 0.00041 8.8E-09 72.4 5.6 71 159-229 120-196 (278)
176 KOG0067 Transcription factor C 97.2 2.8E-05 6E-10 83.7 -3.1 204 125-340 20-231 (435)
177 PRK12439 NAD(P)H-dependent gly 97.2 0.00071 1.5E-08 72.7 7.5 92 163-257 8-114 (341)
178 PRK07340 ornithine cyclodeamin 97.2 0.00074 1.6E-08 71.6 7.2 91 160-257 123-220 (304)
179 PRK14185 bifunctional 5,10-met 97.2 0.0014 3E-08 69.5 9.1 78 159-257 154-236 (293)
180 PTZ00345 glycerol-3-phosphate 97.2 0.0017 3.8E-08 70.8 9.9 98 160-259 9-134 (365)
181 COG0240 GpsA Glycerol-3-phosph 97.1 0.0014 3E-08 70.4 8.5 105 163-269 2-120 (329)
182 PRK14620 NAD(P)H-dependent gly 97.1 0.0018 3.8E-08 68.7 9.2 92 164-257 2-109 (326)
183 TIGR03376 glycerol3P_DH glycer 97.1 0.002 4.3E-08 69.7 9.5 93 164-258 1-120 (342)
184 PRK11730 fadB multifunctional 97.1 0.0035 7.6E-08 73.9 12.3 116 163-282 314-453 (715)
185 PRK14167 bifunctional 5,10-met 97.1 0.0019 4.2E-08 68.6 9.1 78 159-257 154-236 (297)
186 cd01078 NAD_bind_H4MPT_DH NADP 97.1 0.00065 1.4E-08 66.7 4.9 96 159-258 25-133 (194)
187 PRK14168 bifunctional 5,10-met 97.0 0.0023 4.9E-08 68.1 8.9 78 159-257 158-240 (297)
188 PRK08618 ornithine cyclodeamin 97.0 0.0014 3.1E-08 70.0 7.5 89 161-256 126-223 (325)
189 PF02423 OCD_Mu_crystall: Orni 97.0 0.001 2.2E-08 70.8 6.1 93 162-258 128-228 (313)
190 PRK06249 2-dehydropantoate 2-r 97.0 0.0065 1.4E-07 64.3 11.9 111 163-277 6-128 (313)
191 COG0362 Gnd 6-phosphogluconate 97.0 0.0037 8E-08 68.4 9.7 118 163-281 4-129 (473)
192 TIGR02992 ectoine_eutC ectoine 96.9 0.0022 4.8E-08 68.6 8.0 89 161-255 128-225 (326)
193 PRK11154 fadJ multifunctional 96.9 0.0073 1.6E-07 71.2 13.0 116 163-282 310-450 (708)
194 PTZ00117 malate dehydrogenase; 96.9 0.0053 1.1E-07 65.7 10.8 119 160-279 3-151 (319)
195 COG1250 FadB 3-hydroxyacyl-CoA 96.9 0.0087 1.9E-07 64.0 12.1 119 162-284 3-145 (307)
196 PRK12549 shikimate 5-dehydroge 96.9 0.0013 2.8E-08 69.2 5.8 69 160-228 125-202 (284)
197 PRK06046 alanine dehydrogenase 96.9 0.0021 4.6E-08 68.7 7.5 88 162-256 129-225 (326)
198 TIGR02441 fa_ox_alpha_mit fatt 96.9 0.0071 1.5E-07 71.6 12.1 117 163-283 336-476 (737)
199 PF13241 NAD_binding_7: Putati 96.9 0.0011 2.5E-08 59.2 4.2 88 159-254 4-91 (103)
200 TIGR02440 FadJ fatty oxidation 96.8 0.011 2.4E-07 69.7 13.2 117 163-283 305-446 (699)
201 PRK00676 hemA glutamyl-tRNA re 96.8 0.0034 7.4E-08 67.9 8.3 76 159-243 171-251 (338)
202 TIGR01763 MalateDH_bact malate 96.8 0.0048 1E-07 65.6 9.3 116 163-279 2-147 (305)
203 COG0373 HemA Glutamyl-tRNA red 96.8 0.0014 3.1E-08 72.4 5.4 94 159-255 175-275 (414)
204 PRK13940 glutamyl-tRNA reducta 96.8 0.0017 3.7E-08 71.9 6.1 79 159-240 178-261 (414)
205 PRK06444 prephenate dehydrogen 96.8 0.0043 9.3E-08 62.3 8.4 61 164-258 2-63 (197)
206 cd01076 NAD_bind_1_Glu_DH NAD( 96.8 0.0067 1.5E-07 62.0 9.9 106 159-274 28-154 (227)
207 cd05313 NAD_bind_2_Glu_DH NAD( 96.8 0.011 2.5E-07 61.5 11.4 155 159-326 35-221 (254)
208 TIGR02437 FadB fatty oxidation 96.8 0.012 2.6E-07 69.5 13.0 116 163-282 314-453 (714)
209 COG2423 Predicted ornithine cy 96.8 0.0043 9.4E-08 66.9 8.3 88 162-255 130-226 (330)
210 PF13380 CoA_binding_2: CoA bi 96.7 0.0074 1.6E-07 55.4 8.5 100 163-274 1-104 (116)
211 smart00859 Semialdhyde_dh Semi 96.7 0.0037 8.1E-08 56.8 6.5 90 164-255 1-100 (122)
212 PRK14982 acyl-ACP reductase; P 96.7 0.0027 5.8E-08 68.7 6.4 97 159-261 152-253 (340)
213 COG1748 LYS9 Saccharopine dehy 96.7 0.0029 6.3E-08 69.5 6.7 66 163-228 2-78 (389)
214 cd05211 NAD_bind_Glu_Leu_Phe_V 96.6 0.038 8.3E-07 56.2 13.8 108 159-274 20-145 (217)
215 cd00650 LDH_MDH_like NAD-depen 96.6 0.0057 1.2E-07 63.2 8.0 115 165-281 1-149 (263)
216 PRK06823 ornithine cyclodeamin 96.6 0.0048 1E-07 66.0 7.6 90 161-256 127-224 (315)
217 PRK09310 aroDE bifunctional 3- 96.6 0.0018 4E-08 72.8 4.5 72 158-229 328-401 (477)
218 PRK14030 glutamate dehydrogena 96.6 0.025 5.4E-07 63.3 13.2 160 159-331 225-416 (445)
219 PRK13301 putative L-aspartate 96.5 0.0078 1.7E-07 63.1 8.2 102 163-270 3-112 (267)
220 PRK06199 ornithine cyclodeamin 96.5 0.0051 1.1E-07 67.5 6.9 93 162-257 155-262 (379)
221 TIGR01921 DAP-DH diaminopimela 96.5 0.0057 1.2E-07 65.8 7.0 86 163-254 4-91 (324)
222 PRK08291 ectoine utilization p 96.5 0.0066 1.4E-07 65.1 7.4 88 161-254 131-227 (330)
223 PLN02477 glutamate dehydrogena 96.5 0.028 6E-07 62.5 12.3 111 159-280 203-334 (410)
224 TIGR01470 cysG_Nterm siroheme 96.4 0.0058 1.2E-07 61.5 6.0 91 158-253 5-99 (205)
225 PRK00048 dihydrodipicolinate r 96.4 0.019 4.1E-07 59.5 10.0 65 163-227 2-69 (257)
226 PRK08269 3-hydroxybutyryl-CoA 96.4 0.016 3.4E-07 62.0 9.6 108 173-283 1-141 (314)
227 TIGR02356 adenyl_thiF thiazole 96.4 0.0085 1.9E-07 59.9 7.0 39 157-195 16-55 (202)
228 PRK00066 ldh L-lactate dehydro 96.4 0.015 3.3E-07 62.1 9.4 95 161-255 5-123 (315)
229 PRK12475 thiamine/molybdopteri 96.3 0.0081 1.8E-07 64.9 6.9 39 157-195 19-58 (338)
230 PRK06407 ornithine cyclodeamin 96.3 0.011 2.3E-07 62.9 7.6 89 162-256 117-214 (301)
231 PF00185 OTCace: Aspartate/orn 96.3 0.019 4.1E-07 55.5 8.4 94 161-254 1-120 (158)
232 PRK06223 malate dehydrogenase; 96.2 0.019 4.1E-07 60.5 9.2 64 163-227 3-79 (307)
233 PF01408 GFO_IDH_MocA: Oxidore 96.2 0.0043 9.3E-08 55.5 3.7 106 164-273 2-114 (120)
234 PRK07589 ornithine cyclodeamin 96.2 0.01 2.2E-07 64.4 7.3 90 162-255 129-226 (346)
235 cd05291 HicDH_like L-2-hydroxy 96.2 0.028 6.1E-07 59.5 10.4 98 163-263 1-124 (306)
236 PRK13303 L-aspartate dehydroge 96.2 0.017 3.6E-07 60.2 8.4 106 163-273 2-114 (265)
237 PRK09414 glutamate dehydrogena 96.2 0.052 1.1E-06 60.9 12.7 114 159-281 229-368 (445)
238 PF03720 UDPG_MGDP_dh_C: UDP-g 96.2 0.0071 1.5E-07 54.4 4.7 81 172-253 17-100 (106)
239 PF01118 Semialdhyde_dh: Semia 96.1 0.012 2.5E-07 53.9 5.9 89 164-257 1-100 (121)
240 PRK00683 murD UDP-N-acetylmura 96.1 0.014 3.1E-07 64.2 7.7 109 162-270 3-126 (418)
241 TIGR02964 xanthine_xdhC xanthi 96.0 0.035 7.6E-07 57.5 9.8 89 163-274 101-189 (246)
242 cd00757 ThiF_MoeB_HesA_family 96.0 0.013 2.8E-07 59.5 6.5 94 157-254 16-143 (228)
243 COG1064 AdhP Zn-dependent alco 96.0 0.0093 2E-07 64.5 5.7 38 161-198 166-203 (339)
244 PRK06719 precorrin-2 dehydroge 96.0 0.014 3E-07 56.4 6.4 38 158-195 9-46 (157)
245 PRK14031 glutamate dehydrogena 96.0 0.077 1.7E-06 59.5 12.9 157 159-327 225-411 (444)
246 COG0026 PurK Phosphoribosylami 96.0 0.013 2.9E-07 63.7 6.7 63 162-224 1-68 (375)
247 PTZ00082 L-lactate dehydrogena 96.0 0.033 7.1E-07 59.8 9.6 96 160-256 4-130 (321)
248 PRK12548 shikimate 5-dehydroge 96.0 0.019 4.1E-07 60.5 7.6 36 160-195 124-160 (289)
249 COG1712 Predicted dinucleotide 95.9 0.016 3.6E-07 59.4 6.6 96 163-263 1-100 (255)
250 PF02558 ApbA: Ketopantoate re 95.9 0.0076 1.7E-07 56.3 3.9 110 165-278 1-124 (151)
251 COG1004 Ugd Predicted UDP-gluc 95.9 0.03 6.5E-07 61.6 8.7 108 163-270 1-136 (414)
252 PRK08306 dipicolinate synthase 95.8 0.063 1.4E-06 56.9 10.8 106 161-274 1-116 (296)
253 cd01339 LDH-like_MDH L-lactate 95.8 0.02 4.2E-07 60.4 7.0 90 165-255 1-116 (300)
254 cd05293 LDH_1 A subgroup of L- 95.8 0.041 8.8E-07 58.9 9.2 92 163-255 4-121 (312)
255 TIGR01850 argC N-acetyl-gamma- 95.7 0.041 8.9E-07 59.6 9.2 97 163-265 1-110 (346)
256 TIGR01809 Shik-DH-AROM shikima 95.6 0.0089 1.9E-07 62.8 3.5 70 160-229 123-201 (282)
257 cd05297 GH4_alpha_glucosidase_ 95.6 0.022 4.9E-07 63.2 6.8 65 164-228 2-84 (423)
258 PF01113 DapB_N: Dihydrodipico 95.6 0.068 1.5E-06 49.4 8.9 100 164-269 2-113 (124)
259 PRK01710 murD UDP-N-acetylmura 95.6 0.066 1.4E-06 59.7 10.2 110 160-270 12-141 (458)
260 PRK00779 ornithine carbamoyltr 95.6 0.18 4E-06 53.9 13.1 66 160-225 150-224 (304)
261 PRK05690 molybdopterin biosynt 95.5 0.023 4.9E-07 58.7 6.0 39 157-195 27-66 (245)
262 PRK06718 precorrin-2 dehydroge 95.5 0.25 5.4E-06 49.6 13.3 72 158-229 6-81 (202)
263 TIGR02355 moeB molybdopterin s 95.5 0.028 6.2E-07 57.9 6.5 39 157-195 19-58 (240)
264 KOG2304 3-hydroxyacyl-CoA dehy 95.4 0.0076 1.6E-07 61.9 2.0 135 161-304 10-174 (298)
265 PLN02353 probable UDP-glucose 95.4 0.085 1.8E-06 59.7 10.4 103 159-265 321-456 (473)
266 cd05292 LDH_2 A subgroup of L- 95.3 0.063 1.4E-06 57.1 8.7 91 163-254 1-116 (308)
267 cd01486 Apg7 Apg7 is an E1-lik 95.3 0.057 1.2E-06 57.8 8.2 88 164-255 1-141 (307)
268 COG0569 TrkA K+ transport syst 95.3 0.015 3.2E-07 59.3 3.6 69 163-231 1-79 (225)
269 KOG2653 6-phosphogluconate deh 95.2 0.05 1.1E-06 59.1 7.4 119 163-282 7-133 (487)
270 PF13478 XdhC_C: XdhC Rossmann 95.2 0.033 7E-07 52.8 5.4 86 165-278 1-86 (136)
271 PF00208 ELFV_dehydrog: Glutam 95.2 0.027 5.9E-07 58.3 5.3 113 159-280 29-170 (244)
272 COG0334 GdhA Glutamate dehydro 95.2 0.041 8.9E-07 60.8 6.9 151 159-329 204-382 (411)
273 TIGR00658 orni_carb_tr ornithi 95.2 0.29 6.3E-06 52.3 13.1 66 160-225 146-223 (304)
274 PRK08644 thiamine biosynthesis 95.2 0.062 1.3E-06 54.4 7.5 38 157-194 23-61 (212)
275 PRK07688 thiamine/molybdopteri 95.1 0.043 9.2E-07 59.4 6.6 39 157-195 19-58 (339)
276 PRK08223 hypothetical protein; 95.1 0.055 1.2E-06 57.5 7.2 39 157-195 22-61 (287)
277 COG5322 Predicted dehydrogenas 95.1 0.037 8E-07 58.2 5.8 100 158-262 163-269 (351)
278 PRK09496 trkA potassium transp 95.1 0.034 7.5E-07 61.1 5.9 89 163-253 1-99 (453)
279 PRK04207 glyceraldehyde-3-phos 95.0 0.06 1.3E-06 58.3 7.3 66 163-228 2-88 (341)
280 PLN02968 Probable N-acetyl-gam 95.0 0.05 1.1E-06 59.9 6.8 101 161-267 37-147 (381)
281 TIGR03026 NDP-sugDHase nucleot 95.0 0.11 2.3E-06 57.3 9.4 89 159-253 310-409 (411)
282 PRK00856 pyrB aspartate carbam 94.9 0.14 3E-06 54.8 9.7 65 160-226 154-221 (305)
283 COG1004 Ugd Predicted UDP-gluc 94.8 0.089 1.9E-06 58.0 8.1 89 160-252 308-406 (414)
284 TIGR00670 asp_carb_tr aspartat 94.8 0.15 3.3E-06 54.4 9.7 66 160-225 148-223 (301)
285 PTZ00079 NADP-specific glutama 94.8 0.37 8E-06 54.3 13.0 157 158-326 233-420 (454)
286 PF02254 TrkA_N: TrkA-N domain 94.7 0.059 1.3E-06 48.1 5.5 86 165-252 1-94 (116)
287 PRK06019 phosphoribosylaminoim 94.7 0.066 1.4E-06 58.2 6.9 63 162-224 2-69 (372)
288 PF13460 NAD_binding_10: NADH( 94.7 0.11 2.3E-06 49.6 7.5 67 165-231 1-73 (183)
289 KOG0023 Alcohol dehydrogenase, 94.6 0.043 9.2E-07 59.0 5.0 36 161-196 181-216 (360)
290 PRK01390 murD UDP-N-acetylmura 94.6 0.13 2.8E-06 57.2 9.0 112 159-270 6-138 (460)
291 TIGR03316 ygeW probable carbam 94.6 0.53 1.2E-05 51.6 13.4 67 159-225 167-252 (357)
292 PRK13814 pyrB aspartate carbam 94.6 0.14 3.1E-06 54.9 8.8 65 160-224 155-223 (310)
293 TIGR02717 AcCoA-syn-alpha acet 94.6 0.22 4.8E-06 55.8 10.7 107 160-274 5-123 (447)
294 PRK08328 hypothetical protein; 94.6 0.076 1.7E-06 54.3 6.5 39 157-195 22-61 (231)
295 cd01492 Aos1_SUMO Ubiquitin ac 94.5 0.084 1.8E-06 52.8 6.6 39 157-195 16-55 (197)
296 PRK07232 bifunctional malic en 94.5 0.45 9.7E-06 56.8 13.6 181 102-325 151-351 (752)
297 PRK03369 murD UDP-N-acetylmura 94.5 0.049 1.1E-06 61.5 5.4 111 160-270 10-141 (488)
298 PRK02255 putrescine carbamoylt 94.5 0.17 3.6E-06 55.0 9.3 67 159-225 151-229 (338)
299 PRK12749 quinate/shikimate deh 94.5 0.19 4E-06 53.3 9.4 36 160-195 122-158 (288)
300 COG0771 MurD UDP-N-acetylmuram 94.5 0.23 4.9E-06 55.9 10.4 123 160-283 5-155 (448)
301 COG1648 CysG Siroheme synthase 94.5 0.043 9.2E-07 55.8 4.3 90 158-253 8-102 (210)
302 PRK00436 argC N-acetyl-gamma-g 94.4 0.12 2.5E-06 56.0 7.9 96 163-263 3-108 (343)
303 PF00056 Ldh_1_N: lactate/mala 94.4 0.035 7.7E-07 52.5 3.5 99 163-263 1-125 (141)
304 PF03435 Saccharop_dh: Sacchar 94.4 0.028 6E-07 61.0 3.1 84 165-254 1-98 (386)
305 PRK05086 malate dehydrogenase; 94.3 0.15 3.3E-06 54.5 8.4 93 163-255 1-119 (312)
306 cd05312 NAD_bind_1_malic_enz N 94.3 0.3 6.4E-06 51.8 10.4 162 159-326 22-221 (279)
307 PRK14106 murD UDP-N-acetylmura 94.3 0.24 5.1E-06 54.8 10.1 112 159-270 2-132 (450)
308 PLN02527 aspartate carbamoyltr 94.3 0.2 4.4E-06 53.6 9.2 66 160-225 149-225 (306)
309 PLN02602 lactate dehydrogenase 94.3 0.31 6.8E-06 53.1 10.8 98 163-263 38-161 (350)
310 PRK05597 molybdopterin biosynt 94.2 0.086 1.9E-06 57.4 6.4 39 157-195 23-62 (355)
311 PLN02520 bifunctional 3-dehydr 94.2 0.065 1.4E-06 61.3 5.7 38 159-196 376-413 (529)
312 cd01338 MDH_choloroplast_like 94.2 0.39 8.5E-06 51.7 11.2 103 163-267 3-139 (322)
313 cd00300 LDH_like L-lactate deh 94.2 0.16 3.5E-06 53.8 8.2 90 165-255 1-116 (300)
314 PLN00106 malate dehydrogenase 94.2 0.27 5.9E-06 53.0 9.9 96 161-257 17-138 (323)
315 TIGR01772 MDH_euk_gproteo mala 94.1 0.21 4.5E-06 53.6 9.0 96 164-261 1-121 (312)
316 COG0169 AroE Shikimate 5-dehyd 94.1 0.063 1.4E-06 56.9 4.9 69 160-228 124-200 (283)
317 PRK12862 malic enzyme; Reviewe 94.1 0.41 9E-06 57.2 12.1 180 103-325 160-359 (763)
318 COG0281 SfcA Malic enzyme [Ene 94.1 1.5 3.1E-05 49.1 15.3 185 101-325 164-368 (432)
319 PRK11064 wecC UDP-N-acetyl-D-m 94.0 0.15 3.3E-06 56.5 7.9 70 158-228 316-396 (415)
320 PRK14027 quinate/shikimate deh 94.0 0.061 1.3E-06 56.8 4.5 69 160-228 125-204 (283)
321 PRK07411 hypothetical protein; 94.0 0.1 2.2E-06 57.5 6.5 39 157-195 33-72 (390)
322 PRK11579 putative oxidoreducta 94.0 0.092 2E-06 56.3 5.9 67 163-230 5-76 (346)
323 PRK01713 ornithine carbamoyltr 93.9 0.32 7E-06 52.7 10.0 95 160-254 154-275 (334)
324 PRK02472 murD UDP-N-acetylmura 93.9 0.51 1.1E-05 52.1 11.7 111 160-270 3-132 (447)
325 cd08230 glucose_DH Glucose deh 93.9 0.1 2.2E-06 55.6 6.0 34 161-194 172-205 (355)
326 PRK09880 L-idonate 5-dehydroge 93.9 0.13 2.7E-06 54.6 6.7 90 161-255 169-267 (343)
327 PRK05708 2-dehydropantoate 2-r 93.9 0.16 3.5E-06 53.8 7.4 113 163-278 3-127 (305)
328 PRK08762 molybdopterin biosynt 93.8 0.12 2.6E-06 56.5 6.5 38 157-194 130-168 (376)
329 PRK05600 thiamine biosynthesis 93.8 0.14 3.1E-06 56.1 7.0 38 157-194 36-74 (370)
330 cd05290 LDH_3 A subgroup of L- 93.8 0.26 5.7E-06 52.7 8.9 92 164-255 1-120 (307)
331 cd01487 E1_ThiF_like E1_ThiF_l 93.8 0.15 3.2E-06 50.0 6.4 32 164-195 1-33 (174)
332 PRK07878 molybdopterin biosynt 93.7 0.13 2.8E-06 56.7 6.5 39 157-195 37-76 (392)
333 PRK10637 cysG siroheme synthas 93.7 0.12 2.5E-06 58.2 6.2 92 158-254 8-103 (457)
334 PTZ00325 malate dehydrogenase; 93.7 0.33 7.1E-06 52.4 9.3 68 160-228 6-86 (321)
335 PLN02819 lysine-ketoglutarate 93.6 0.095 2.1E-06 64.3 5.9 67 161-228 568-658 (1042)
336 PLN02948 phosphoribosylaminoim 93.6 0.19 4.1E-06 58.2 7.9 73 157-229 17-94 (577)
337 PRK02102 ornithine carbamoyltr 93.5 0.24 5.2E-06 53.7 7.9 66 160-225 153-231 (331)
338 PRK02006 murD UDP-N-acetylmura 93.4 0.15 3.2E-06 57.5 6.6 114 160-273 5-148 (498)
339 PRK05562 precorrin-2 dehydroge 93.4 2.2 4.8E-05 43.9 14.4 39 158-196 21-59 (223)
340 PLN02342 ornithine carbamoyltr 93.4 0.4 8.7E-06 52.3 9.5 67 160-226 192-267 (348)
341 PRK07806 short chain dehydroge 93.4 0.24 5.3E-06 49.3 7.4 37 159-195 3-40 (248)
342 KOG4230 C1-tetrahydrofolate sy 93.3 0.59 1.3E-05 53.7 10.9 162 159-356 159-326 (935)
343 PRK00421 murC UDP-N-acetylmura 93.3 0.13 2.7E-06 57.5 5.7 113 160-272 5-133 (461)
344 cd01337 MDH_glyoxysomal_mitoch 93.3 0.31 6.8E-06 52.3 8.4 93 163-255 1-118 (310)
345 PRK05786 fabG 3-ketoacyl-(acyl 93.2 0.2 4.3E-06 49.5 6.5 37 160-196 3-40 (238)
346 PLN03209 translocon at the inn 93.2 0.19 4.1E-06 58.2 7.1 70 160-229 78-170 (576)
347 TIGR02853 spore_dpaA dipicolin 93.2 0.73 1.6E-05 48.8 11.0 105 162-274 1-115 (287)
348 PRK06270 homoserine dehydrogen 93.2 0.43 9.3E-06 51.6 9.4 111 163-273 3-145 (341)
349 PRK09496 trkA potassium transp 93.2 0.18 3.9E-06 55.5 6.7 92 160-253 229-330 (453)
350 cd01483 E1_enzyme_family Super 93.1 0.56 1.2E-05 43.8 9.0 32 164-195 1-33 (143)
351 cd01485 E1-1_like Ubiquitin ac 93.1 0.25 5.5E-06 49.3 7.1 39 157-195 14-53 (198)
352 TIGR01381 E1_like_apg7 E1-like 93.1 0.25 5.5E-06 57.7 7.9 120 114-254 307-480 (664)
353 PRK11891 aspartate carbamoyltr 93.1 0.36 7.9E-06 54.0 8.9 67 160-226 239-316 (429)
354 cd01336 MDH_cytoplasmic_cytoso 93.1 0.5 1.1E-05 50.9 9.7 98 164-263 4-135 (325)
355 TIGR01759 MalateDH-SF1 malate 93.0 0.51 1.1E-05 50.9 9.6 99 163-263 4-136 (323)
356 PF02629 CoA_binding: CoA bind 93.0 0.39 8.4E-06 42.4 7.3 88 162-254 3-94 (96)
357 cd00704 MDH Malate dehydrogena 93.0 0.67 1.5E-05 50.0 10.5 101 163-265 1-135 (323)
358 TIGR00036 dapB dihydrodipicoli 92.9 0.61 1.3E-05 48.8 9.8 65 163-227 2-77 (266)
359 TIGR01161 purK phosphoribosyla 92.9 0.16 3.5E-06 54.5 5.7 62 164-225 1-67 (352)
360 TIGR03366 HpnZ_proposed putati 92.9 0.17 3.7E-06 52.2 5.6 35 161-195 120-155 (280)
361 TIGR01758 MDH_euk_cyt malate d 92.9 0.62 1.3E-05 50.2 10.0 98 164-263 1-132 (324)
362 PRK04284 ornithine carbamoyltr 92.9 0.47 1E-05 51.4 9.1 66 160-225 153-231 (332)
363 PRK07576 short chain dehydroge 92.8 0.14 3E-06 52.2 4.8 39 157-195 4-43 (264)
364 PRK06349 homoserine dehydrogen 92.8 0.48 1E-05 52.8 9.4 107 163-273 4-124 (426)
365 PLN02214 cinnamoyl-CoA reducta 92.8 0.37 8E-06 51.4 8.2 70 159-228 7-91 (342)
366 PRK06398 aldose dehydrogenase; 92.8 0.42 9.2E-06 48.5 8.3 38 159-196 3-41 (258)
367 PRK07877 hypothetical protein; 92.8 0.17 3.6E-06 60.1 6.0 100 157-260 102-235 (722)
368 PRK12861 malic enzyme; Reviewe 92.8 0.43 9.3E-06 57.0 9.3 180 103-325 156-355 (764)
369 cd01491 Ube1_repeat1 Ubiquitin 92.7 0.39 8.6E-06 51.0 8.2 39 157-195 14-53 (286)
370 PRK07231 fabG 3-ketoacyl-(acyl 92.7 0.16 3.5E-06 50.4 5.0 37 160-196 3-40 (251)
371 PRK00141 murD UDP-N-acetylmura 92.7 0.16 3.4E-06 57.1 5.5 113 159-271 12-146 (473)
372 PRK05442 malate dehydrogenase; 92.7 0.9 2E-05 49.1 11.0 101 163-265 5-139 (326)
373 PRK03659 glutathione-regulated 92.7 0.13 2.8E-06 59.7 4.9 92 162-255 400-499 (601)
374 cd05294 LDH-like_MDH_nadp A la 92.7 1 2.2E-05 48.2 11.3 98 163-263 1-128 (309)
375 CHL00194 ycf39 Ycf39; Provisio 92.7 0.38 8.2E-06 50.6 8.0 65 163-227 1-73 (317)
376 PRK04690 murD UDP-N-acetylmura 92.7 0.21 4.5E-06 56.1 6.3 111 160-270 6-139 (468)
377 COG0673 MviM Predicted dehydro 92.6 0.15 3.2E-06 53.6 4.9 69 163-231 4-80 (342)
378 COG3288 PntA NAD/NADP transhyd 92.6 0.2 4.4E-06 53.7 5.7 95 159-254 161-281 (356)
379 TIGR01202 bchC 2-desacetyl-2-h 92.6 0.22 4.8E-06 52.2 6.0 87 161-254 144-231 (308)
380 PRK15076 alpha-galactosidase; 92.5 0.19 4.2E-06 56.2 5.8 67 163-229 2-86 (431)
381 TIGR01771 L-LDH-NAD L-lactate 92.5 0.37 8.1E-06 51.3 7.7 95 167-263 1-120 (299)
382 cd05188 MDR Medium chain reduc 92.5 0.31 6.8E-06 48.3 6.7 35 161-195 134-168 (271)
383 PRK14851 hypothetical protein; 92.4 0.23 4.9E-06 58.7 6.4 38 157-194 38-76 (679)
384 PRK10669 putative cation:proto 92.3 0.18 3.9E-06 57.8 5.2 88 163-252 418-513 (558)
385 PRK12550 shikimate 5-dehydroge 92.1 0.17 3.7E-06 53.3 4.4 64 162-228 122-188 (272)
386 PRK03515 ornithine carbamoyltr 92.1 0.42 9.1E-06 51.9 7.5 66 160-225 154-232 (336)
387 PRK03562 glutathione-regulated 92.1 0.17 3.7E-06 59.0 4.8 92 162-255 400-499 (621)
388 PRK01368 murD UDP-N-acetylmura 92.0 0.35 7.6E-06 54.2 7.0 110 160-270 4-128 (454)
389 PRK10206 putative oxidoreducta 91.9 0.21 4.5E-06 53.9 5.0 67 164-230 3-76 (344)
390 PLN00112 malate dehydrogenase 91.9 1.1 2.3E-05 50.6 10.6 106 163-270 101-240 (444)
391 TIGR03649 ergot_EASG ergot alk 91.8 0.61 1.3E-05 47.9 8.1 67 164-230 1-79 (285)
392 COG1893 ApbA Ketopantoate redu 91.8 2.5 5.4E-05 45.3 12.9 141 163-307 1-154 (307)
393 PRK06128 oxidoreductase; Provi 91.8 0.4 8.7E-06 49.9 6.9 37 158-194 51-88 (300)
394 TIGR02822 adh_fam_2 zinc-bindi 91.8 0.29 6.3E-06 51.9 5.9 90 161-255 165-255 (329)
395 PRK08300 acetaldehyde dehydrog 91.8 0.36 7.9E-06 51.7 6.6 157 162-325 4-183 (302)
396 PRK08192 aspartate carbamoyltr 91.8 0.69 1.5E-05 50.3 8.7 67 159-225 156-233 (338)
397 cd00257 Fascin Fascin-like dom 91.7 0.59 1.3E-05 42.2 7.0 75 507-592 44-119 (119)
398 TIGR02622 CDP_4_6_dhtase CDP-g 91.7 0.51 1.1E-05 50.2 7.6 37 160-196 2-39 (349)
399 PLN02695 GDP-D-mannose-3',5'-e 91.7 0.59 1.3E-05 50.7 8.1 67 161-227 20-94 (370)
400 cd00762 NAD_bind_malic_enz NAD 91.7 1.4 3E-05 46.3 10.4 159 159-326 22-222 (254)
401 PRK08040 putative semialdehyde 91.6 0.53 1.2E-05 51.1 7.7 89 161-255 3-98 (336)
402 cd01489 Uba2_SUMO Ubiquitin ac 91.5 0.72 1.6E-05 49.7 8.5 88 164-255 1-123 (312)
403 cd08239 THR_DH_like L-threonin 91.5 0.33 7.1E-06 51.0 5.9 36 161-196 163-199 (339)
404 PRK03806 murD UDP-N-acetylmura 91.5 0.41 8.9E-06 52.9 6.8 111 160-270 4-129 (438)
405 TIGR01761 thiaz-red thiazoliny 91.4 0.57 1.2E-05 51.0 7.7 108 163-274 4-117 (343)
406 PRK06392 homoserine dehydrogen 91.4 0.93 2E-05 49.0 9.2 109 164-273 2-136 (326)
407 PRK01438 murD UDP-N-acetylmura 91.4 0.38 8.2E-06 53.8 6.5 111 159-270 13-146 (480)
408 PRK12939 short chain dehydroge 91.4 0.54 1.2E-05 46.6 7.0 37 159-195 4-41 (250)
409 PF03447 NAD_binding_3: Homose 91.3 0.23 5E-06 44.8 3.9 86 169-259 1-95 (117)
410 TIGR03215 ac_ald_DH_ac acetald 91.3 0.52 1.1E-05 50.1 7.0 88 163-255 2-96 (285)
411 COG1063 Tdh Threonine dehydrog 91.2 0.47 1E-05 51.3 6.8 89 162-255 169-270 (350)
412 PRK12562 ornithine carbamoyltr 91.2 1.7 3.7E-05 47.3 11.0 67 160-226 154-233 (334)
413 cd00755 YgdL_like Family of ac 91.2 0.59 1.3E-05 48.2 7.1 111 157-274 6-129 (231)
414 PLN02662 cinnamyl-alcohol dehy 91.1 0.51 1.1E-05 49.0 6.7 67 161-227 3-85 (322)
415 PLN02586 probable cinnamyl alc 91.0 0.72 1.6E-05 49.6 8.0 35 161-195 183-217 (360)
416 TIGR01087 murD UDP-N-acetylmur 91.0 1.9 4.2E-05 47.5 11.5 108 164-272 1-128 (433)
417 cd01490 Ube1_repeat2 Ubiquitin 90.9 0.48 1E-05 53.2 6.6 87 164-253 1-105 (435)
418 PRK12742 oxidoreductase; Provi 90.8 0.89 1.9E-05 44.9 7.8 36 159-194 3-39 (237)
419 PRK05678 succinyl-CoA syntheta 90.8 1.6 3.5E-05 46.5 10.2 108 161-274 7-118 (291)
420 PRK11863 N-acetyl-gamma-glutam 90.7 0.79 1.7E-05 49.4 7.8 77 163-255 3-82 (313)
421 TIGR03736 PRTRC_ThiF PRTRC sys 90.7 0.95 2.1E-05 47.1 8.1 91 161-255 10-142 (244)
422 PRK15057 UDP-glucose 6-dehydro 90.6 0.91 2E-05 50.1 8.4 65 160-227 294-368 (388)
423 cd05283 CAD1 Cinnamyl alcohol 90.6 0.51 1.1E-05 49.7 6.3 36 161-196 169-204 (337)
424 PLN00141 Tic62-NAD(P)-related 90.6 0.78 1.7E-05 46.4 7.3 70 159-228 14-95 (251)
425 PF00899 ThiF: ThiF family; I 90.5 0.27 5.9E-06 45.6 3.7 34 162-195 2-36 (135)
426 PRK08265 short chain dehydroge 90.5 0.53 1.1E-05 47.8 6.1 38 158-195 2-40 (261)
427 PF00070 Pyr_redox: Pyridine n 90.5 0.48 1E-05 39.9 4.8 35 164-198 1-35 (80)
428 PRK06701 short chain dehydroge 90.4 0.7 1.5E-05 48.1 7.0 38 158-195 42-80 (290)
429 COG4007 Predicted dehydrogenas 90.4 2.2 4.7E-05 45.1 10.3 96 174-274 33-133 (340)
430 PRK13529 malate dehydrogenase; 90.4 2.3 5E-05 49.2 11.5 217 77-326 236-498 (563)
431 PF04016 DUF364: Domain of unk 90.3 0.73 1.6E-05 44.2 6.5 87 160-257 9-98 (147)
432 PRK03803 murD UDP-N-acetylmura 90.3 2 4.3E-05 47.7 10.8 110 161-270 5-132 (448)
433 COG2344 AT-rich DNA-binding pr 90.2 0.36 7.8E-06 48.6 4.3 66 164-229 86-157 (211)
434 KOG2711 Glycerol-3-phosphate d 90.2 1.3 2.8E-05 48.3 8.8 94 161-256 20-141 (372)
435 TIGR01532 E4PD_g-proteo D-eryt 90.2 0.51 1.1E-05 51.0 5.9 30 164-193 1-34 (325)
436 PLN03129 NADP-dependent malic 89.9 4 8.6E-05 47.5 12.9 193 102-326 287-517 (581)
437 TIGR01472 gmd GDP-mannose 4,6- 89.9 1 2.2E-05 47.7 7.8 33 163-195 1-34 (343)
438 PRK06182 short chain dehydroge 89.9 0.69 1.5E-05 47.1 6.3 36 161-196 2-38 (273)
439 PLN02819 lysine-ketoglutarate 89.9 0.3 6.4E-06 60.1 4.2 93 160-254 201-338 (1042)
440 PRK08324 short chain dehydroge 89.9 0.34 7.5E-06 56.9 4.6 39 158-196 418-457 (681)
441 TIGR01777 yfcH conserved hypot 89.8 1.3 2.8E-05 45.0 8.2 63 166-228 2-67 (292)
442 cd08234 threonine_DH_like L-th 89.8 0.44 9.5E-06 49.6 4.9 92 161-257 159-260 (334)
443 PRK04308 murD UDP-N-acetylmura 89.8 2.5 5.5E-05 46.9 11.1 111 160-270 3-134 (445)
444 PRK15182 Vi polysaccharide bio 89.8 1.2 2.7E-05 49.7 8.7 94 159-258 311-416 (425)
445 PRK14874 aspartate-semialdehyd 89.8 1 2.3E-05 48.5 7.8 89 162-256 1-96 (334)
446 TIGR03466 HpnA hopanoid-associ 89.8 0.52 1.1E-05 48.7 5.4 66 163-228 1-74 (328)
447 TIGR01851 argC_other N-acetyl- 89.7 1.2 2.6E-05 48.1 8.1 77 164-255 3-81 (310)
448 PRK14852 hypothetical protein; 89.7 0.59 1.3E-05 57.0 6.4 38 157-194 327-365 (989)
449 cd08237 ribitol-5-phosphate_DH 89.6 1 2.2E-05 48.0 7.5 88 161-254 163-256 (341)
450 PRK13376 pyrB bifunctional asp 89.4 1.3 2.8E-05 51.0 8.5 62 160-221 172-244 (525)
451 PLN02178 cinnamyl-alcohol dehy 89.3 0.81 1.8E-05 49.8 6.7 35 161-195 178-212 (375)
452 PF05368 NmrA: NmrA-like famil 89.3 0.2 4.4E-06 49.9 1.9 114 165-279 1-141 (233)
453 PRK15181 Vi polysaccharide bio 89.2 0.68 1.5E-05 49.4 5.9 37 159-195 12-49 (348)
454 PRK12937 short chain dehydroge 89.2 1.6 3.5E-05 43.2 8.2 35 160-194 3-38 (245)
455 TIGR03201 dearomat_had 6-hydro 89.2 0.62 1.3E-05 49.5 5.5 36 161-196 166-201 (349)
456 PRK04663 murD UDP-N-acetylmura 89.0 3.2 6.9E-05 46.1 11.2 112 159-270 3-132 (438)
457 PRK07523 gluconate 5-dehydroge 89.0 0.79 1.7E-05 46.0 5.9 37 159-195 7-44 (255)
458 PRK12826 3-ketoacyl-(acyl-carr 88.9 0.88 1.9E-05 45.0 6.1 37 159-195 3-40 (251)
459 PRK14804 ornithine carbamoyltr 88.8 1 2.2E-05 48.4 6.9 67 160-226 151-226 (311)
460 TIGR01142 purT phosphoribosylg 88.8 1 2.2E-05 48.6 6.9 34 164-197 1-34 (380)
461 PLN02206 UDP-glucuronate decar 88.7 2 4.3E-05 48.2 9.3 68 160-227 117-192 (442)
462 PRK07856 short chain dehydroge 88.7 0.68 1.5E-05 46.5 5.2 37 159-195 3-40 (252)
463 PRK08664 aspartate-semialdehyd 88.7 1.5 3.2E-05 47.6 8.1 86 163-255 4-108 (349)
464 PRK06728 aspartate-semialdehyd 88.6 1.3 2.9E-05 48.4 7.7 88 161-255 4-100 (347)
465 PLN02427 UDP-apiose/xylose syn 88.6 0.76 1.7E-05 49.6 5.9 70 158-227 10-95 (386)
466 TIGR01757 Malate-DH_plant mala 88.6 2.4 5.3E-05 47.0 9.8 103 163-267 45-181 (387)
467 PF05222 AlaDh_PNT_N: Alanine 88.6 2.8 6.1E-05 39.7 8.9 99 175-283 17-119 (136)
468 PLN02657 3,8-divinyl protochlo 88.4 0.81 1.7E-05 50.2 5.9 37 159-195 57-94 (390)
469 TIGR01296 asd_B aspartate-semi 88.4 1.2 2.5E-05 48.4 7.0 87 164-255 1-93 (339)
470 TIGR02825 B4_12hDH leukotriene 88.4 0.8 1.7E-05 47.9 5.6 35 161-195 138-173 (325)
471 PRK04148 hypothetical protein; 88.4 0.62 1.3E-05 44.4 4.3 67 161-228 16-87 (134)
472 cd08245 CAD Cinnamyl alcohol d 88.2 0.77 1.7E-05 47.8 5.4 90 161-255 162-257 (330)
473 cd08255 2-desacetyl-2-hydroxye 88.2 0.84 1.8E-05 46.2 5.5 91 161-256 97-192 (277)
474 PRK12859 3-ketoacyl-(acyl-carr 88.2 1.3 2.8E-05 44.8 6.9 37 158-194 2-41 (256)
475 PLN02383 aspartate semialdehyd 88.2 1.8 4E-05 47.1 8.4 89 161-255 6-101 (344)
476 PLN02740 Alcohol dehydrogenase 88.1 1 2.2E-05 48.7 6.4 36 161-196 198-234 (381)
477 PLN02896 cinnamyl-alcohol dehy 88.1 0.95 2.1E-05 48.2 6.1 71 158-228 6-89 (353)
478 PF03949 Malic_M: Malic enzyme 87.9 1.2 2.5E-05 46.8 6.4 108 159-270 22-157 (255)
479 PLN02989 cinnamyl-alcohol dehy 87.9 1.2 2.6E-05 46.6 6.6 67 161-227 4-86 (325)
480 PRK06194 hypothetical protein; 87.9 0.58 1.2E-05 47.9 4.1 37 159-195 3-40 (287)
481 COG0039 Mdh Malate/lactate deh 87.8 1.2 2.7E-05 47.9 6.7 69 163-231 1-84 (313)
482 cd08296 CAD_like Cinnamyl alco 87.7 0.95 2.1E-05 47.6 5.8 35 161-195 163-197 (333)
483 PRK12367 short chain dehydroge 87.7 1.1 2.3E-05 45.9 6.0 38 158-195 10-48 (245)
484 cd08233 butanediol_DH_like (2R 87.7 1.3 2.9E-05 46.8 6.9 35 161-195 172-207 (351)
485 KOG0022 Alcohol dehydrogenase, 87.7 0.44 9.5E-06 51.5 3.1 49 161-209 192-241 (375)
486 PRK12828 short chain dehydroge 87.7 1.9 4.1E-05 42.2 7.5 38 159-196 4-42 (239)
487 TIGR03451 mycoS_dep_FDH mycoth 87.5 1.1 2.5E-05 47.7 6.3 36 161-196 176-212 (358)
488 PRK06500 short chain dehydroge 87.4 1.1 2.4E-05 44.4 5.7 37 159-195 3-40 (249)
489 PRK08217 fabG 3-ketoacyl-(acyl 87.3 0.74 1.6E-05 45.6 4.5 36 160-195 3-39 (253)
490 cd08281 liver_ADH_like1 Zinc-d 87.3 0.89 1.9E-05 48.8 5.3 36 161-196 191-227 (371)
491 KOG1207 Diacetyl reductase/L-x 87.2 0.52 1.1E-05 47.2 3.2 113 159-282 4-137 (245)
492 COG0540 PyrB Aspartate carbamo 87.2 1.3 2.8E-05 47.7 6.3 66 159-224 155-230 (316)
493 PRK08594 enoyl-(acyl carrier p 87.2 2.3 5.1E-05 43.3 8.1 36 159-194 4-42 (257)
494 PRK07326 short chain dehydroge 87.2 1 2.2E-05 44.4 5.3 36 160-195 4-40 (237)
495 PF02056 Glyco_hydro_4: Family 87.1 1.3 2.9E-05 44.2 6.0 104 164-267 1-157 (183)
496 PLN02514 cinnamyl-alcohol dehy 87.0 1.3 2.8E-05 47.4 6.4 90 161-255 180-276 (357)
497 cd08295 double_bond_reductase_ 87.0 1.1 2.5E-05 47.1 5.9 35 161-195 151-186 (338)
498 cd08269 Zn_ADH9 Alcohol dehydr 87.0 1.4 3E-05 45.1 6.4 35 161-195 129-164 (312)
499 PRK04523 N-acetylornithine car 87.0 1.6 3.6E-05 47.4 7.1 67 160-226 166-252 (335)
500 PRK08264 short chain dehydroge 86.9 1.1 2.4E-05 44.3 5.4 39 159-197 3-43 (238)
No 1
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-64 Score=531.23 Aligned_cols=281 Identities=25% Similarity=0.351 Sum_probs=255.7
Q ss_pred ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhc
Q 006758 54 DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRT 133 (632)
Q Consensus 54 e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl 133 (632)
.+.+.++|++++ +.++++++++..+|+||+|++.|+|+||||+++++++||.|+|+|++|+.+||||+++++|+++|++
T Consensus 40 ~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~ 118 (324)
T COG0111 40 LEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRI 118 (324)
T ss_pred HhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCc
Confidence 356889999888 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHH
Q 006758 134 HLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLN 213 (632)
Q Consensus 134 ~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~ 213 (632)
+.++..+ +++.|.... ....+|+|+||||||+|+||+.+|++|++|||+|++|||+..... ....+....++|+
T Consensus 119 ~~~~~~~-~~g~W~~~~----~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~-~~~~~~~~~~~Ld 192 (324)
T COG0111 119 PDADASQ-RRGEWDRKA----FRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRER-AGVDGVVGVDSLD 192 (324)
T ss_pred hhhHHHH-HcCCccccc----cccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhh-hccccceecccHH
Confidence 9999885 899998621 233589999999999999999999999999999999999654432 2234566678999
Q ss_pred HHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCcccc
Q 006758 214 DLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVR 292 (632)
Q Consensus 214 eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~ 292 (632)
++|++||||++|+|+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++|||
T Consensus 193 ~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~ 272 (324)
T COG0111 193 ELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLW 272 (324)
T ss_pred HHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 777789999
Q ss_pred CCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCC---CCccccCCcCc
Q 006758 293 EMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVI---PKNAISDTEGC 342 (632)
Q Consensus 293 ~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~---p~nvVn~~~~~ 342 (632)
.+|||++|||+|+.|.++++++...+++|+.+|+ .|.. +.+.|+..++|
T Consensus 273 ~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l-~g~~~~~~~~~v~~~~~~ 324 (324)
T COG0111 273 DLPNVILTPHIGGSTDEAQERVAEIVAENIVRYL-AGGPVVNNAPEVDLERGY 324 (324)
T ss_pred cCCCeEECCcccccCHHHHHHHHHHHHHHHHHHH-cCCCCCCCccccccccCC
Confidence 9999999999999999999999999999999996 7776 45556655554
No 2
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=3.8e-63 Score=522.25 Aligned_cols=315 Identities=30% Similarity=0.390 Sum_probs=270.2
Q ss_pred CCEEEEeCCCCCCchHHhhccCCceEEecCCC--CCc--ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCc
Q 006758 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLG--RLA--DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRT 94 (632)
Q Consensus 19 kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~~--~l~--e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~ 94 (632)
|+.++....++. ...+.|....++..+... ..+ .+.+++++++++....+++.++++++|+||+|+..|+||||
T Consensus 2 k~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~ 79 (324)
T COG1052 2 KIVVLSTRKLPP--EVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDN 79 (324)
T ss_pred CcEEEecCcCCH--HHHHHhhccEEEEEeccCCccchHHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCc
Confidence 556555544332 244555555565555432 222 45688999999887779999999999999999999999999
Q ss_pred cchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhh
Q 006758 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174 (632)
Q Consensus 95 VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG 174 (632)
||+++|+++||.|+|+|++++++||||+|+|||++.|++..+++. .+.+.|.....+....+.+++|||+||||+|+||
T Consensus 80 vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~-~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG 158 (324)
T COG1052 80 VDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRR-VREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIG 158 (324)
T ss_pred ccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHH-HhcCcccccCCcccccccCCCCCEEEEECCCHHH
Confidence 999999999999999999999999999999999999999999997 6899997653122223468999999999999999
Q ss_pred HHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 175 ~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
+++|+++++|||+|+|||+++. .+.+...+..++ +|++++++||+|++|||+|++|+||||++.|++||+|++|||+|
T Consensus 159 ~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNta 236 (324)
T COG1052 159 QAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTA 236 (324)
T ss_pred HHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECC
Confidence 9999999999999999999975 222222334444 49999999999999999999999999999999999999999999
Q ss_pred CChhhcHHHHHHHHHcCCcceEEeecCCCCCC-CCccccCCCc---EEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCC
Q 006758 255 SSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW-MEAWVREMPN---VLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (632)
Q Consensus 255 RG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~-~~~pL~~~pN---VIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~ 330 (632)
||++||++||++||++|+|+||+|||||++|. .++||+.++| |++|||+|++|.+++.+|...+++|+..|+ +|.
T Consensus 237 RG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~-~g~ 315 (324)
T COG1052 237 RGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFF-DGG 315 (324)
T ss_pred CccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHH-cCC
Confidence 99999999999999999999999999998554 6899998888 999999999999999999999999999997 777
Q ss_pred CCCccccCC
Q 006758 331 IPKNAISDT 339 (632)
Q Consensus 331 ~p~nvVn~~ 339 (632)
.|.+.|+++
T Consensus 316 ~~~~~v~~~ 324 (324)
T COG1052 316 VPPNEVNPE 324 (324)
T ss_pred CCCCCCCCC
Confidence 899998863
No 3
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=6.5e-63 Score=520.67 Aligned_cols=314 Identities=25% Similarity=0.301 Sum_probs=267.3
Q ss_pred CCCEEEEeCCCCCCchHHhhccCCceEEecCC-CCCc----ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccC
Q 006758 18 PLPSVVALNCIEDCVLEQDSLAGVALVEHVPL-GRLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92 (632)
Q Consensus 18 ~kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~-~~l~----e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~ 92 (632)
++|+|++...+. ....+.|+...++..++. ...+ .+.+.++|++++.. .++++++++++|+||+|++.|+|+
T Consensus 1 ~~~~vl~~~~~~--~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~-~~~~~~~l~~~p~Lk~I~~~g~G~ 77 (323)
T PRK15409 1 MKPSVILYKALP--DDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSG-EKVDAALLEKMPKLRAASTISVGY 77 (323)
T ss_pred CCceEEEeCCCC--HHHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcC-CCCCHHHHhhCCCCeEEEECceec
Confidence 357888887653 223445655555544431 1111 24577899988754 489999999999999999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCCh
Q 006758 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSA 172 (632)
Q Consensus 93 D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~ 172 (632)
|+||+++|+++||.|+|+|++++++||||++++||+++|++..+++. .+++.|.......+ ...+|.|+||||||+|+
T Consensus 78 d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~-~~~g~w~~~~~~~~-~g~~L~gktvGIiG~G~ 155 (323)
T PRK15409 78 DNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAER-VKAGEWTASIGPDW-FGTDVHHKTLGIVGMGR 155 (323)
T ss_pred ccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHH-HHcCCCcccCcccc-ccCCCCCCEEEEEcccH
Confidence 99999999999999999999999999999999999999999998887 58899964321111 23689999999999999
Q ss_pred hhHHHHHHHh-hCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEE
Q 006758 173 SARALATRSL-SFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLV 251 (632)
Q Consensus 173 IG~~vA~~Lk-afGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLI 251 (632)
||+.+|++++ +|||+|++||++..... ....+. .+.+|++++++||+|++|||+|++|++|||++.|++||+|++||
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~~~-~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI 233 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHKEA-EERFNA-RYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI 233 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhh-HHhcCc-EecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE
Confidence 9999999998 99999999998753321 111233 34699999999999999999999999999999999999999999
Q ss_pred EcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCC
Q 006758 252 NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (632)
Q Consensus 252 NvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~ 330 (632)
|+|||++||++||++||++|+|+||+||||++ |++.++|||++|||++|||+||+|.+++.++...+++||.+|+ .|+
T Consensus 234 N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~-~g~ 312 (323)
T PRK15409 234 NAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDAL-QGK 312 (323)
T ss_pred ECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHH-cCC
Confidence 99999999999999999999999999999987 6678899999999999999999999999999999999999997 788
Q ss_pred CCCccccCC
Q 006758 331 IPKNAISDT 339 (632)
Q Consensus 331 ~p~nvVn~~ 339 (632)
.|.|+||++
T Consensus 313 ~~~~~vn~~ 321 (323)
T PRK15409 313 VEKNCVNPQ 321 (323)
T ss_pred CCCcccCcc
Confidence 899999864
No 4
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=8.4e-62 Score=509.68 Aligned_cols=300 Identities=21% Similarity=0.296 Sum_probs=254.5
Q ss_pred EEEeCCCCCCchHHhhccCCceEEecCCC--CCcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHH
Q 006758 22 VVALNCIEDCVLEQDSLAGVALVEHVPLG--RLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSAL 99 (632)
Q Consensus 22 VvvL~~~e~~~~e~e~L~~laeV~~~~~~--~l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~a 99 (632)
|++++.........+.|+...++..++.. +...+.+.++|+++++ ..++++++++++|+||+|+++|+|+|+||+++
T Consensus 3 i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~ 81 (311)
T PRK08410 3 IVILDAKTLGDKDLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTNNVDIEY 81 (311)
T ss_pred EEEEecCCCChhhHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEcccccccccHHH
Confidence 55555422223344566665555544321 1123467889988776 45899999999999999999999999999999
Q ss_pred HHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCC--CCccccccCcEEEEEeCChhhHHH
Q 006758 100 AADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPL--CRGMRRCRGLVLGIVGRSASARAL 177 (632)
Q Consensus 100 a~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~--~~~~~~L~GktVGIIGlG~IG~~v 177 (632)
|+++||.|+|+||+++++||||++++||+++|++..+++. .+++.|....... ...+++|.|+||||||+|+||+.+
T Consensus 82 ~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~-~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~v 160 (311)
T PRK08410 82 AKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRY-VKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRV 160 (311)
T ss_pred HHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHH
Confidence 9999999999999999999999999999999999998887 5889997432111 112468999999999999999999
Q ss_pred HHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 178 A~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
|+++++|||+|++|||+..... .+ ..+.+|++++++||||++|||+|++|+||||++.|++||||++|||+|||+
T Consensus 161 A~~~~~fgm~V~~~d~~~~~~~----~~-~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~ 235 (311)
T PRK08410 161 AKIAQAFGAKVVYYSTSGKNKN----EE-YERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGG 235 (311)
T ss_pred HHHHhhcCCEEEEECCCccccc----cC-ceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCcc
Confidence 9999999999999999753321 12 235699999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCC---CcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCC
Q 006758 258 LLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREM---PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (632)
Q Consensus 258 iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~---pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~ 330 (632)
+||++||++||++|+|+ |+||||++ |++.++|||.+ ||||+|||+||+|.++..++...+++||.+|+ +|+
T Consensus 236 vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~-~g~ 310 (311)
T PRK08410 236 IVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFL-EGG 310 (311)
T ss_pred ccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHH-cCC
Confidence 99999999999999999 99999997 77788999986 89999999999999999999999999999997 554
No 5
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=4.8e-61 Score=505.19 Aligned_cols=273 Identities=28% Similarity=0.376 Sum_probs=244.0
Q ss_pred ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhc
Q 006758 54 DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRT 133 (632)
Q Consensus 54 e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl 133 (632)
.+.+.++|+++++. .++++++++++|+||+|+++|+|+|+||+++|.++||.|+|+||+++.+||||++++||+++|++
T Consensus 40 ~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~ 118 (317)
T PRK06487 40 AERLRGAQVAISNK-VALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRL 118 (317)
T ss_pred HHHhCCCeEEEEeC-CCCCHHHHhhCCCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCH
Confidence 35678899887663 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCC--CCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCC
Q 006758 134 HLLARHALSASGWLGSVQP--LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211 (632)
Q Consensus 134 ~~~~~~~~~~g~W~~~~~~--~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~s 211 (632)
..+++. .+++.|...... .....++|.|+||||||+|+||+.+|+++++|||+|++||++.... . ....+
T Consensus 119 ~~~~~~-~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~------~-~~~~~ 190 (317)
T PRK06487 119 PDYQQA-VAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA------R-PDRLP 190 (317)
T ss_pred HHHHHH-HHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc------c-ccccC
Confidence 999887 588999753211 0112358999999999999999999999999999999999864321 1 12358
Q ss_pred HHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCcc
Q 006758 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAW 290 (632)
Q Consensus 212 L~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~p 290 (632)
|++++++||||++|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++|
T Consensus 191 l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~p 270 (317)
T PRK06487 191 LDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNP 270 (317)
T ss_pred HHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 6677889
Q ss_pred ccC--CCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006758 291 VRE--MPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337 (632)
Q Consensus 291 L~~--~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn 337 (632)
||. +|||++|||+||+|.+++.++...+++||.+|+ .|+ |.++||
T Consensus 271 l~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~-~g~-~~~~v~ 317 (317)
T PRK06487 271 LLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFF-AGK-PLRVVS 317 (317)
T ss_pred hhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHH-cCC-CCcCCC
Confidence 995 899999999999999999999999999999996 776 667664
No 6
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=6.1e-61 Score=507.47 Aligned_cols=316 Identities=23% Similarity=0.270 Sum_probs=266.6
Q ss_pred CCCEEEEeCCCCCCchHHhhccCCceEEecCCC-CCc----ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccC
Q 006758 18 PLPSVVALNCIEDCVLEQDSLAGVALVEHVPLG-RLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92 (632)
Q Consensus 18 ~kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~~-~l~----e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~ 92 (632)
++|+|++...++ ....+.|+...++..++.. ... .+.+.++|++++....++++++++++|+||||+++|+|+
T Consensus 1 ~~~kil~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~ 78 (333)
T PRK13243 1 MKPKVFITREIP--ENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGY 78 (333)
T ss_pred CCceEEEECCCC--HHHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccc
Confidence 357787776542 2223455554455443211 111 245788999888766689999999999999999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCC---CCCCCccccccCcEEEEEe
Q 006758 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSV---QPLCRGMRRCRGLVLGIVG 169 (632)
Q Consensus 93 D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~---~~~~~~~~~L~GktVGIIG 169 (632)
||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++. .+.+.|.... .+....+++|.|++|||||
T Consensus 79 d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~-~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG 157 (333)
T PRK13243 79 DNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHF-VRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIG 157 (333)
T ss_pred cccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCCccccccccccccccCCCCCEEEEEC
Confidence 99999999999999999999999999999999999999999998887 5889997431 1111123689999999999
Q ss_pred CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcE
Q 006758 170 RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249 (632)
Q Consensus 170 lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAv 249 (632)
+|+||+.+|++|++|||+|++||++..... ....+. ...++++++++||+|++|+|+|++|+++|+++.|+.||+|++
T Consensus 158 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~ 235 (333)
T PRK13243 158 FGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGA-EYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAI 235 (333)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCC-EecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeE
Confidence 999999999999999999999999764321 112222 346899999999999999999999999999999999999999
Q ss_pred EEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Q 006758 250 LVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDG 329 (632)
Q Consensus 250 LINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G 329 (632)
|||+|||++||++||+++|++|+|+||+||||++||++++|||++||||+|||+||+|.++..++...+++||.+|+ +|
T Consensus 236 lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~-~g 314 (333)
T PRK13243 236 LVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFK-RG 314 (333)
T ss_pred EEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHH-cC
Confidence 99999999999999999999999999999999984445899999999999999999999999999999999999996 88
Q ss_pred CCCCccccCC
Q 006758 330 VIPKNAISDT 339 (632)
Q Consensus 330 ~~p~nvVn~~ 339 (632)
+.|.|+||++
T Consensus 315 ~~~~~~v~~~ 324 (333)
T PRK13243 315 EVPPTLVNRE 324 (333)
T ss_pred CCCCcccCHH
Confidence 8899999853
No 7
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-60 Score=499.18 Aligned_cols=268 Identities=25% Similarity=0.387 Sum_probs=239.5
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcH
Q 006758 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (632)
Q Consensus 55 ~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~ 134 (632)
+.++++|++++. ..++++++++++|+||+|++.|+|+|+||+++|.++||.|+|+||+++.+||||++++||+++|++.
T Consensus 40 ~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~ 118 (314)
T PRK06932 40 ERAKDADIVITS-KVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLM 118 (314)
T ss_pred HHhCCCcEEEEe-CCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChH
Confidence 467889987764 4589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCC--CCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCH
Q 006758 135 LLARHALSASGWLGSVQP--LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (632)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~--~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (632)
.+++. .+.+.|...... ....+.+|+|+||||||+|.||+.+|+++++|||+|++||+..... .. ..+.+|
T Consensus 119 ~~~~~-~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~---~~---~~~~~l 191 (314)
T PRK06932 119 GWYRD-QLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV---CR---EGYTPF 191 (314)
T ss_pred HHHHH-HHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc---cc---cccCCH
Confidence 98887 478899643211 0112368999999999999999999999999999999999764211 11 124689
Q ss_pred HHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccc
Q 006758 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWV 291 (632)
Q Consensus 213 ~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL 291 (632)
++++++||||++|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++||
T Consensus 192 ~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl 271 (314)
T PRK06932 192 EEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPL 271 (314)
T ss_pred HHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 77788999
Q ss_pred c----CCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCC
Q 006758 292 R----EMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (632)
Q Consensus 292 ~----~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~ 330 (632)
| ++|||++|||+||+|.+++.++...+++||.+|+..|+
T Consensus 272 ~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 272 IQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred hHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8 59999999999999999999999999999999986553
No 8
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-59 Score=509.47 Aligned_cols=310 Identities=26% Similarity=0.297 Sum_probs=264.0
Q ss_pred CCCEEEEeCCCCCCchHHhhccCC-c-eEEecCCCC---CcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccC
Q 006758 18 PLPSVVALNCIEDCVLEQDSLAGV-A-LVEHVPLGR---LADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92 (632)
Q Consensus 18 ~kP~VvvL~~~e~~~~e~e~L~~l-a-eV~~~~~~~---l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~ 92 (632)
.+.+|++++.+. +...+.|... . ++...+... ...+.+.++|++++.+..++++++++++|+||+|+++|+|+
T Consensus 9 ~~~~ili~~~~~--~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~ 86 (409)
T PRK11790 9 DKIKFLLLEGVH--QSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCIGT 86 (409)
T ss_pred CCeEEEEECCCC--HHHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECceec
Confidence 345677776432 2233445432 2 555443211 11246788999887777789999999999999999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCCh
Q 006758 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSA 172 (632)
Q Consensus 93 D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~ 172 (632)
||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++. .+.+.|.... ..+++|.|+||||||+|+
T Consensus 87 d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~-~~~g~w~~~~----~~~~~L~gktvGIiG~G~ 161 (409)
T PRK11790 87 NQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAK-AHRGGWNKSA----AGSFEVRGKTLGIVGYGH 161 (409)
T ss_pred ccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHH-HHcCcccccc----cCcccCCCCEEEEECCCH
Confidence 99999999999999999999999999999999999999999998887 5789997532 123689999999999999
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEE
Q 006758 173 SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVN 252 (632)
Q Consensus 173 IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLIN 252 (632)
||+.+|+++++|||+|++||++..... .+.....+|++++++||+|++|||+|++|+||||++.|++||+|++|||
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~~~----~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN 237 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKLPL----GNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILIN 237 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCccccc----CCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEE
Confidence 999999999999999999998743211 1234456999999999999999999999999999999999999999999
Q ss_pred cCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCC----CccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHH
Q 006758 253 TGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWM----EAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFF 327 (632)
Q Consensus 253 vgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~----~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~ 327 (632)
+|||++||++||++||++|+|+||+||||++ |++. ++|||.+|||++|||+||+|.+++.++...+++|+.+|+
T Consensus 238 ~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~- 316 (409)
T PRK11790 238 ASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYS- 316 (409)
T ss_pred CCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999987 5444 469999999999999999999999999999999999997
Q ss_pred cCCCCCccccCC
Q 006758 328 DGVIPKNAISDT 339 (632)
Q Consensus 328 ~G~~p~nvVn~~ 339 (632)
.|..+.+.||..
T Consensus 317 ~~~~~~~~vn~~ 328 (409)
T PRK11790 317 DNGSTLSAVNFP 328 (409)
T ss_pred cCCCcCcceecc
Confidence 666788999965
No 9
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=1.6e-59 Score=505.14 Aligned_cols=321 Identities=20% Similarity=0.207 Sum_probs=265.6
Q ss_pred CCCCCEEEEeCCCCCCchHHhhccCC-ceEEecCC-C-CCc----cccc-ccceEEEEecCCCCCHHHHhcCCC--ceEE
Q 006758 16 PTPLPSVVALNCIEDCVLEQDSLAGV-ALVEHVPL-G-RLA----DGKI-EAAAAVLLHSLAYLPRAAQRRLRP--YQLI 85 (632)
Q Consensus 16 ~~~kP~VvvL~~~e~~~~e~e~L~~l-aeV~~~~~-~-~l~----e~~i-~dAdaIli~s~~~L~~evL~~lp~--LK~I 85 (632)
+-.+++|++...++... ..+.|+.. .++..+.. . ..+ .+.+ +++|++++....++++++++++++ ||+|
T Consensus 12 ~~~~~~v~~~~~~~~~~-~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I 90 (386)
T PLN02306 12 PNGKYRVVSTKPMPGTR-WINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAF 90 (386)
T ss_pred CCCCceEEEeCCCCcHH-HHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEE
Confidence 44578888887653211 23445543 35543321 1 122 2344 468888887667899999999996 6999
Q ss_pred EEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEE
Q 006758 86 LCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVL 165 (632)
Q Consensus 86 ~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktV 165 (632)
+++|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++. ++.+.|...... .....+|.|+||
T Consensus 91 ~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~-~~~g~w~~~~~~-~~~g~~L~gktv 168 (386)
T PLN02306 91 SNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEF-MRAGLYEGWLPH-LFVGNLLKGQTV 168 (386)
T ss_pred EECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHH-HHcCCCcccccc-ccCCcCCCCCEE
Confidence 999999999999999999999999999999999999999999999999998887 477878532111 112357999999
Q ss_pred EEEeCChhhHHHHHHHh-hCCCEEEEECCCCCCCCc----ccc----------cCceecCCHHHHhccCCEEEEccCCCh
Q 006758 166 GIVGRSASARALATRSL-SFKMSVLYFDVPEGKGKV----TFP----------SAARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 166 GIIGlG~IG~~vA~~Lk-afGm~V~~~dr~~~~~~~----~~~----------~g~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
||||+|.||+.+|++++ +|||+|++||++...... .+. .......+|++++++||||++|||+|+
T Consensus 169 GIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~ 248 (386)
T PLN02306 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDK 248 (386)
T ss_pred EEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCCh
Confidence 99999999999999985 999999999988642110 000 011224689999999999999999999
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHH
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEV 310 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea 310 (632)
+|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+.+++||++|||++|||+||+|.++
T Consensus 249 ~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHiag~T~e~ 328 (386)
T PLN02306 249 TTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWT 328 (386)
T ss_pred hhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCccccCcHHH
Confidence 99999999999999999999999999999999999999999999999999998666678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCc
Q 006758 311 WMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (632)
Q Consensus 311 ~~~~~~~a~~nL~~fL~~G~~p~nvVn~~~ 340 (632)
+.++...+++||.+|+ +|+.+.|.||+.+
T Consensus 329 ~~~~~~~~~~ni~~~~-~g~~~~~~~~~~~ 357 (386)
T PLN02306 329 REGMATLAALNVLGKL-KGYPVWGDPNRVE 357 (386)
T ss_pred HHHHHHHHHHHHHHHH-cCCCCcccccchh
Confidence 9999999999999996 8999999999664
No 10
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-59 Score=504.68 Aligned_cols=308 Identities=22% Similarity=0.284 Sum_probs=261.2
Q ss_pred EeCCCCCCchHHhhccCC-ceEEecCCCC----CcccccccceEEEEec--CCCCCHHHHhcCCCceEEEEecccCCccc
Q 006758 24 ALNCIEDCVLEQDSLAGV-ALVEHVPLGR----LADGKIEAAAAVLLHS--LAYLPRAAQRRLRPYQLILCLGSSDRTVD 96 (632)
Q Consensus 24 vL~~~e~~~~e~e~L~~l-aeV~~~~~~~----l~e~~i~dAdaIli~s--~~~L~~evL~~lp~LK~I~~~gaG~D~VD 96 (632)
++.|..........|+.. .++....... ...+.+.++|++++.. ..++++++++++|+||||+++|+|+||||
T Consensus 50 ~~~~~~~~~~~~~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id 129 (385)
T PRK07574 50 LLGSVSGELGLRKFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVD 129 (385)
T ss_pred eeeeccChhhHHHHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCccccccc
Confidence 344544433334455554 3454433221 2235688999988764 35799999999999999999999999999
Q ss_pred hHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHH
Q 006758 97 SALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARA 176 (632)
Q Consensus 97 ~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~ 176 (632)
+++|.++||.|+|++++++.+||||++++||+++|++..+++. .+.+.|..... ....++|.|++|||||+|+||+.
T Consensus 130 ~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~-~~~g~W~~~~~--~~~~~~L~gktVGIvG~G~IG~~ 206 (385)
T PRK07574 130 LQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQ-AVEGGWNIADC--VSRSYDLEGMTVGIVGAGRIGLA 206 (385)
T ss_pred HHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHH-HHhCCCCcccc--cccceecCCCEEEEECCCHHHHH
Confidence 9999999999999999999999999999999999999998887 57899975311 11246899999999999999999
Q ss_pred HHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 177 LATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 177 vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
+|++|++|||+|++||++..........++..+.+++++++.||||++|||+|++|++|||++.|++||+|++|||+|||
T Consensus 207 vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG 286 (385)
T PRK07574 207 VLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARG 286 (385)
T ss_pred HHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCC
Confidence 99999999999999999863322112234455679999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 006758 257 QLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNA 335 (632)
Q Consensus 257 ~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nv 335 (632)
++||++||++||++|+|+||+||||++ |++.++|||.+|||++|||+||+|.+++.++...+++||.+|+ +|+.+.|.
T Consensus 287 ~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~-~G~~~~~~ 365 (385)
T PRK07574 287 KIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFF-EGRPIRDE 365 (385)
T ss_pred chhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHH-cCCCCCCC
Confidence 999999999999999999999999997 7788999999999999999999999999999999999999997 77766554
No 11
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=3e-59 Score=502.43 Aligned_cols=285 Identities=21% Similarity=0.282 Sum_probs=253.3
Q ss_pred cccccceEEEEec--CCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhh
Q 006758 55 GKIEAAAAVLLHS--LAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (632)
Q Consensus 55 ~~i~dAdaIli~s--~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rr 132 (632)
+.+.++|++++.. ..++++++++++|+||||++.|+|+||||+++|.++||.|+|++|+|+.+||||++++||+++|+
T Consensus 93 ~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~ 172 (386)
T PLN03139 93 KHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRN 172 (386)
T ss_pred HHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcC
Confidence 5678999988764 24799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCH
Q 006758 133 THLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (632)
Q Consensus 133 l~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (632)
+..+++. .+++.|..... ....++|.|++|||||+|+||+.+|++|++|||+|++||++..........++...++|
T Consensus 173 ~~~~~~~-~~~g~W~~~~~--~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l 249 (386)
T PLN03139 173 FLPGYHQ-VVSGEWNVAGI--AYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDL 249 (386)
T ss_pred cHHHHHH-HHhCCCccccc--cCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCH
Confidence 9998887 47899974211 12236899999999999999999999999999999999998533221222344556799
Q ss_pred HHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccc
Q 006758 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWV 291 (632)
Q Consensus 213 ~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL 291 (632)
++++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++||
T Consensus 250 ~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL 329 (386)
T PLN03139 250 DAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPW 329 (386)
T ss_pred HHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 77889999
Q ss_pred cCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCC--CCCccccCCcCcc
Q 006758 292 REMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV--IPKNAISDTEGCE 343 (632)
Q Consensus 292 ~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~--~p~nvVn~~~~~~ 343 (632)
|.+|||++|||+||.|.+++.++...+++||.+|+ +|+ .|.++|...-.|.
T Consensus 330 ~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~-~G~~~~~~~~i~~~~~~~ 382 (386)
T PLN03139 330 RYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYF-KGEDFPAQNYIVKEGKLA 382 (386)
T ss_pred hcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHH-cCCCCCCcceeecCCccc
Confidence 99999999999999999999999999999999997 665 3667777666564
No 12
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=4.8e-59 Score=495.61 Aligned_cols=312 Identities=22% Similarity=0.222 Sum_probs=260.0
Q ss_pred CCCCCCEEEEeCCCCCC--chHHhhccCCceEEecC-CCCCcccccccceEEEEecCCCCCHHHHhcCCCceEEEEeccc
Q 006758 15 NPTPLPSVVALNCIEDC--VLEQDSLAGVALVEHVP-LGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSS 91 (632)
Q Consensus 15 ~~~~kP~VvvL~~~e~~--~~e~e~L~~laeV~~~~-~~~l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG 91 (632)
+.+++|+|+++....+. ....+.++.+..+.... ..+...+.+.++|+++++ ..++++++++.+|+||||++.++|
T Consensus 14 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G 92 (347)
T PLN02928 14 SDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICVPK-MMRLDADIIARASQMKLIMQFGVG 92 (347)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHhhcCCeeEecCCCHHHHHHHhcCCcEEEEC-CCCCCHHHHhcCCCceEEEECCcc
Confidence 45678888888764332 22345555443222211 111123457889987765 348999999999999999999999
Q ss_pred CCccchHHHHhcCcEEEEcCCC---ChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEE
Q 006758 92 DRTVDSALAADLGLRLIHVDTS---RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIV 168 (632)
Q Consensus 92 ~D~VD~~aa~erGI~VtNvpg~---na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGII 168 (632)
+|+||+++|.++||.|+|+|++ ++.+||||+++++|+++|++..+.+. .+.+.|... ...+|.|+|||||
T Consensus 93 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~-~~~~~w~~~------~~~~l~gktvGIi 165 (347)
T PLN02928 93 LEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQIS-LKARRLGEP------IGDTLFGKTVFIL 165 (347)
T ss_pred cCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCcccc------cccCCCCCEEEEE
Confidence 9999999999999999999986 78999999999999999999988877 477889531 1257999999999
Q ss_pred eCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------cccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 169 GRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 169 GlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-----------~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
|+|.||+.+|++|++|||+|++|||+....... +........+|++++++||||++|||+|++|++||+
T Consensus 166 G~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~ 245 (347)
T PLN02928 166 GYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVN 245 (347)
T ss_pred CCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccC
Confidence 999999999999999999999999974321100 000011457999999999999999999999999999
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCCCcEEEcCCCCCccHHHHHHHHH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRD 316 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~ 316 (632)
++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++|||++|||++|||+|++|.+++.++..
T Consensus 246 ~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~ 325 (347)
T PLN02928 246 DEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGK 325 (347)
T ss_pred HHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 777889999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcc
Q 006758 317 KAISVLQTFFFDGVIPKNA 335 (632)
Q Consensus 317 ~a~~nL~~fL~~G~~p~nv 335 (632)
.+++||.+|+ .|+++.|+
T Consensus 326 ~~~~nl~~~~-~g~~~~~~ 343 (347)
T PLN02928 326 IVGDAALQLH-AGRPLTGI 343 (347)
T ss_pred HHHHHHHHHH-CCCCCCce
Confidence 9999999996 78766553
No 13
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=6.4e-58 Score=510.25 Aligned_cols=279 Identities=22% Similarity=0.282 Sum_probs=254.4
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcH
Q 006758 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (632)
Q Consensus 55 ~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~ 134 (632)
+.+.++|++++++.+++++++++++|+||||+++|+|+||||+++|+++||.|+|+|++++.+||||++++||+++|+++
T Consensus 36 ~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~ 115 (525)
T TIGR01327 36 EIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIP 115 (525)
T ss_pred HHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHH
Confidence 56789999998877789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHH
Q 006758 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (632)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (632)
.+++. .+++.|.+.. ....+|.|+||||||+|+||+.+|++|++|||+|++||++..... ....+....++|++
T Consensus 116 ~~~~~-~~~g~W~~~~----~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~-~~~~g~~~~~~l~e 189 (525)
T TIGR01327 116 QADAS-LKEGEWDRKA----FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPER-AEQLGVELVDDLDE 189 (525)
T ss_pred HHHHH-HHcCCccccc----cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH-HHhcCCEEcCCHHH
Confidence 99887 5789997431 123579999999999999999999999999999999998743221 22234444568999
Q ss_pred HhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCC
Q 006758 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREM 294 (632)
Q Consensus 215 LL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~ 294 (632)
++++||+|++|||+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+.++|||++
T Consensus 190 ll~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~ 269 (525)
T TIGR01327 190 LLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDL 269 (525)
T ss_pred HHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999866779999999
Q ss_pred CcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCc
Q 006758 295 PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (632)
Q Consensus 295 pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn~~~ 340 (632)
|||++|||+|++|.+++.++...+++|+.+|+ .|+.+.|.||...
T Consensus 270 ~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~-~g~~~~~~vn~~~ 314 (525)
T TIGR01327 270 DNVIATPHLGASTREAQENVATQVAEQVLDAL-KGLPVPNAVNAPG 314 (525)
T ss_pred CCeEECCCccccHHHHHHHHHHHHHHHHHHHH-cCCCCCceeeCCC
Confidence 99999999999999999999999999999996 7888999999775
No 14
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=7.3e-57 Score=501.89 Aligned_cols=278 Identities=24% Similarity=0.311 Sum_probs=252.4
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcH
Q 006758 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (632)
Q Consensus 55 ~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~ 134 (632)
+.+.++|++++++.+++++++++++|+||||+++|+|+||||+++|+++||.|+|+|++++.+||||++++||+++|+++
T Consensus 38 ~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~ 117 (526)
T PRK13581 38 EIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIP 117 (526)
T ss_pred HHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHH
Confidence 45788999998877789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHH
Q 006758 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (632)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (632)
.+++. .+++.|.+.. ....+|.|+||||||+|+||+.+|++|++|||+|++||++..... ....+.... ++++
T Consensus 118 ~~~~~-~~~g~W~~~~----~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~-~~~~g~~~~-~l~e 190 (526)
T PRK13581 118 QAHAS-LKAGKWERKK----FMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPER-AAQLGVELV-SLDE 190 (526)
T ss_pred HHHHH-HHcCCCCccC----ccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH-HHhcCCEEE-cHHH
Confidence 99887 5789997531 123579999999999999999999999999999999998753221 122334443 8999
Q ss_pred HhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCC
Q 006758 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREM 294 (632)
Q Consensus 215 LL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~ 294 (632)
++++||+|++|||+|++|+++|+++.|+.||+|++|||+|||++||++||++||++|+|+||+||||+++|+.++|||++
T Consensus 191 ll~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~ 270 (526)
T PRK13581 191 LLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFEL 270 (526)
T ss_pred HHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999855569999999
Q ss_pred CcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCc
Q 006758 295 PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (632)
Q Consensus 295 pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn~~~ 340 (632)
|||++|||+|++|.+++.++...+++|+.+|+ +|+.+.|+||...
T Consensus 271 ~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~-~g~~~~~~vn~~~ 315 (526)
T PRK13581 271 PNVVVTPHLGASTAEAQENVAIQVAEQVIDAL-RGGPVPNAVNLPS 315 (526)
T ss_pred CCeeEcCccccchHHHHHHHHHHHHHHHHHHH-cCCCcCceeeCCC
Confidence 99999999999999999999999999999996 7888999999765
No 15
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=9.1e-56 Score=467.65 Aligned_cols=275 Identities=19% Similarity=0.247 Sum_probs=243.0
Q ss_pred ccccccceEEEEecCCCCCHHHHhcCC--CceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHh
Q 006758 54 DGKIEAAAAVLLHSLAYLPRAAQRRLR--PYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLR 131 (632)
Q Consensus 54 e~~i~dAdaIli~s~~~L~~evL~~lp--~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~R 131 (632)
.+.+.++|++++....++++++++++| +||+|++.|+|+|+||+++|+++||.|+|+|++++++||||++++||+++|
T Consensus 40 ~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R 119 (330)
T PRK12480 40 VDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVR 119 (330)
T ss_pred HHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHH
Confidence 356788999988876689999999997 899999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCC
Q 006758 132 RTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211 (632)
Q Consensus 132 rl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~s 211 (632)
++..+++. .+.+.|.... + ...++|+|++|||||+|.||+.+|++|++|||+|++||++...... ......+
T Consensus 120 ~~~~~~~~-~~~~~~~w~~-~--~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~~~~~~ 191 (330)
T PRK12480 120 RFPDIERR-VQAHDFTWQA-E--IMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FLTYKDS 191 (330)
T ss_pred hHHHHHHH-HHhCCccccc-c--cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hhhccCC
Confidence 99988876 4666553111 1 1235799999999999999999999999999999999988643221 1223458
Q ss_pred HHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCC-----
Q 006758 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW----- 286 (632)
Q Consensus 212 L~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~----- 286 (632)
+++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||.+||++||++||++|+|+||+||||++||+
T Consensus 192 l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~ 271 (330)
T PRK12480 192 VKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTND 271 (330)
T ss_pred HHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997442
Q ss_pred ---------CCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006758 287 ---------MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337 (632)
Q Consensus 287 ---------~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn 337 (632)
..+|||++|||++|||+|++|.+++.++.+.+++|+.+|+ .|+.+.+.||
T Consensus 272 ~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~ 330 (330)
T PRK12480 272 WTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVI-NTGTCETRLN 330 (330)
T ss_pred ccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHH-hCCCCcccCC
Confidence 1147999999999999999999999999999999999997 6666888776
No 16
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-56 Score=462.00 Aligned_cols=310 Identities=19% Similarity=0.267 Sum_probs=270.0
Q ss_pred EEEEeCCCCCCchHHhhccCCc-eEEecCCC--CCcccccccceEEEEecCCCCCHHHHh-cCCCceEEEEecccCCccc
Q 006758 21 SVVALNCIEDCVLEQDSLAGVA-LVEHVPLG--RLADGKIEAAAAVLLHSLAYLPRAAQR-RLRPYQLILCLGSSDRTVD 96 (632)
Q Consensus 21 ~VvvL~~~e~~~~e~e~L~~la-eV~~~~~~--~l~e~~i~dAdaIli~s~~~L~~evL~-~lp~LK~I~~~gaG~D~VD 96 (632)
+|++++.++... .+.|++.. ++...... +..-..++++|++++++.+++++++++ ...+||+|.+.|+|+||||
T Consensus 8 ~il~~e~~~~~~--~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVD 85 (406)
T KOG0068|consen 8 KILVAESLDQAC--IEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVD 85 (406)
T ss_pred eEEEecccchHH--HHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccC
Confidence 788887765433 34556543 44444321 122356889999999999999999999 6677999999999999999
Q ss_pred hHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHH
Q 006758 97 SALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARA 176 (632)
Q Consensus 97 ~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~ 176 (632)
+.+|+++||.|+|+|.+|+.++||+++++|++|+|++++.... ++.|.|.+.. ..+.+|+|||+||+|+|+||+.
T Consensus 86 L~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s-~k~g~wnr~~----~~G~el~GKTLgvlG~GrIGse 160 (406)
T KOG0068|consen 86 LKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASAS-MKEGKWNRVK----YLGWELRGKTLGVLGLGRIGSE 160 (406)
T ss_pred hhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhhee-eecCceeecc----eeeeEEeccEEEEeecccchHH
Confidence 9999999999999999999999999999999999999988776 6999998653 2347899999999999999999
Q ss_pred HHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 177 LATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 177 vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
+|++++++||+|++||+...... ....|++ ..+++|+++.||||++|||+||+|++|||.+.|++||+|..+||++||
T Consensus 161 VA~r~k~~gm~vI~~dpi~~~~~-~~a~gvq-~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRG 238 (406)
T KOG0068|consen 161 VAVRAKAMGMHVIGYDPITPMAL-AEAFGVQ-LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARG 238 (406)
T ss_pred HHHHHHhcCceEEeecCCCchHH-HHhccce-eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCC
Confidence 99999999999999999865432 2223444 469999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceEEeecCCCCCCC---CccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 006758 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWM---EAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPK 333 (632)
Q Consensus 257 ~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~---~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~ 333 (632)
++||+.||++||++|+++|||||||++|||. ++.|-.+|||++|||+|+.|.|++.+++..+++++..|+ +| ...
T Consensus 239 GvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~-~~-~~~ 316 (406)
T KOG0068|consen 239 GVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYI-NG-NSA 316 (406)
T ss_pred ceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHh-cc-Ccc
Confidence 9999999999999999999999999986666 678999999999999999999999999999999999996 66 577
Q ss_pred ccccCCcC
Q 006758 334 NAISDTEG 341 (632)
Q Consensus 334 nvVn~~~~ 341 (632)
..||...-
T Consensus 317 g~Vna~~v 324 (406)
T KOG0068|consen 317 GSVNAPEV 324 (406)
T ss_pred ceechhhh
Confidence 88887654
No 17
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=1.3e-54 Score=455.60 Aligned_cols=270 Identities=18% Similarity=0.224 Sum_probs=235.8
Q ss_pred cccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHH-----HHhcCcEEEEcCC-CChHHHHHHHHHHHHHHH
Q 006758 57 IEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSAL-----AADLGLRLIHVDT-SRAEEIADTVMALLLGLL 130 (632)
Q Consensus 57 i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~a-----a~erGI~VtNvpg-~na~aVAE~ALaliLal~ 130 (632)
.+++|+++++.. +.+++. .++||||++.|+|+|++|..+ +..+||.|+|+++ .++.+||||++++||+++
T Consensus 36 ~~~a~~~~~~~~---~~~~l~-~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~ 111 (312)
T PRK15469 36 NDPADYALVWHP---PVEMLA-GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWF 111 (312)
T ss_pred CccCeEEEEeCC---ChHHhc-cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHH
Confidence 568899888753 567775 589999999999999998332 3358999999864 689999999999999999
Q ss_pred hhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecC
Q 006758 131 RRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD 210 (632)
Q Consensus 131 Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~ 210 (632)
|++..+... .+.+.|... ...++.|+||||||+|.||+.+|++|++|||+|++||++..... ... ......
T Consensus 112 r~~~~~~~~-~~~~~w~~~------~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~-~~~-~~~~~~ 182 (312)
T PRK15469 112 RRFDDYQAL-QNSSHWQPL------PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWP-GVQ-SFAGRE 182 (312)
T ss_pred cChHHHHHH-HHhCCcCCC------CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCC-Cce-eecccc
Confidence 999988776 478899642 12468999999999999999999999999999999998764321 111 112346
Q ss_pred CHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCc
Q 006758 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEA 289 (632)
Q Consensus 211 sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~ 289 (632)
+|++++++||+|++|||+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++
T Consensus 183 ~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~ 262 (312)
T PRK15469 183 ELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPES 262 (312)
T ss_pred cHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999997 778889
Q ss_pred cccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCcCc
Q 006758 290 WVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGC 342 (632)
Q Consensus 290 pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn~~~~~ 342 (632)
|||.+|||++|||+|++|.+. ++...+++|+++|+ +|+.|.|+||+.+||
T Consensus 263 pl~~~~nvi~TPHiag~t~~~--~~~~~~~~n~~~~~-~g~~~~~~V~~~~gY 312 (312)
T PRK15469 263 PLWQHPRVAITPHVAAVTRPA--EAVEYISRTIAQLE-KGERVCGQVDRARGY 312 (312)
T ss_pred hhhcCCCeEECCcCCCCcCHH--HHHHHHHHHHHHHH-cCCCCcccCCcccCC
Confidence 999999999999999999874 67889999999995 888999999999998
No 18
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=2.3e-54 Score=457.08 Aligned_cols=275 Identities=20% Similarity=0.242 Sum_probs=243.0
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCC--ceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhh
Q 006758 55 GKIEAAAAVLLHSLAYLPRAAQRRLRP--YQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (632)
Q Consensus 55 ~~i~dAdaIli~s~~~L~~evL~~lp~--LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rr 132 (632)
+.+.++|++++....++++++++++|+ ||+|++.|+|+|+||+++|+++||.|+|+|++++.+||||++++||+++|+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~ 120 (332)
T PRK08605 41 EEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRH 120 (332)
T ss_pred HHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcC
Confidence 467889999988778999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHH-hhCCCEEEEECCCCCCCCcccccCceecCC
Q 006758 133 THLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS-LSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211 (632)
Q Consensus 133 l~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L-kafGm~V~~~dr~~~~~~~~~~~g~~~~~s 211 (632)
+..+++. .+++.|.... . ...++|.|++|||||+|.||+.+|++| ++|||+|++||++..... ........+
T Consensus 121 ~~~~~~~-~~~~~~~~~~-~--~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~ 193 (332)
T PRK08605 121 FNQIQTK-VREHDFRWEP-P--ILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDT 193 (332)
T ss_pred hHHHHHH-HHhCCccccc-c--cccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCC
Confidence 9998876 4677663111 1 123679999999999999999999999 789999999998764321 122333468
Q ss_pred HHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCC---CCC
Q 006758 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ---WME 288 (632)
Q Consensus 212 L~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~---~~~ 288 (632)
+++++++||+|++|+|++++|+++++.+.|+.||+|++|||++||.++|+++|+++|++|+|+||+||||+.+| +.+
T Consensus 194 l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~ 273 (332)
T PRK08605 194 IEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSD 273 (332)
T ss_pred HHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998633 334
Q ss_pred c-----------cccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006758 289 A-----------WVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337 (632)
Q Consensus 289 ~-----------pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn 337 (632)
+ +||.+|||++|||+|++|.+++.++...+++|+.+|+ +|+...|.||
T Consensus 274 ~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~-~g~~~~~~~~ 332 (332)
T PRK08605 274 QRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLEVL-QTGTTRLRVN 332 (332)
T ss_pred cccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHH-cCCCCCCCcC
Confidence 3 5999999999999999999999999999999999997 6766777765
No 19
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=3.4e-54 Score=462.87 Aligned_cols=280 Identities=22% Similarity=0.284 Sum_probs=248.6
Q ss_pred EEEEeCCCCCCchHHhhccCCceEEecCCCCCcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHH
Q 006758 21 SVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALA 100 (632)
Q Consensus 21 ~VvvL~~~e~~~~e~e~L~~laeV~~~~~~~l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa 100 (632)
+|++.+.. ++..+.|..+.++.+.+...++.+.+.++|++++++.+++++++++ .++||||+++++|+||||++++
T Consensus 2 kI~~d~~~---p~~~~~~~~~~~v~~~~~~~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~ 77 (381)
T PRK00257 2 KIVADENI---PLLDAFFAGFGEIRRLPGRAFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHLDLDYF 77 (381)
T ss_pred EEEEecCc---hhHHHHHhhCCcEEEcCCcccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCccccccCHHHH
Confidence 46666543 4567778888888888877777778999999999988899999997 4899999999999999999999
Q ss_pred HhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHH
Q 006758 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATR 180 (632)
Q Consensus 101 ~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~ 180 (632)
+++||.|+|+||+|+.+||||+++++|+++|+. ..+|.|+||||||+|+||+.+|++
T Consensus 78 ~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~-----------------------g~~l~gktvGIIG~G~IG~~va~~ 134 (381)
T PRK00257 78 AEAGITWSSAPGCNARGVVDYVLGSLLTLAERE-----------------------GVDLAERTYGVVGAGHVGGRLVRV 134 (381)
T ss_pred HHCCCEEEECCCcChHHHHHHHHHHHHHHhccc-----------------------CCCcCcCEEEEECCCHHHHHHHHH
Confidence 999999999999999999999999999998751 135899999999999999999999
Q ss_pred HhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCCh----hhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD----ETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 181 LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~----~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
+++|||+|++||+...... +...+.+|++++++||+|++|+|+|+ .|+||||++.|++||+|++|||+|||
T Consensus 135 l~a~G~~V~~~Dp~~~~~~-----~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG 209 (381)
T PRK00257 135 LRGLGWKVLVCDPPRQEAE-----GDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRG 209 (381)
T ss_pred HHHCCCEEEEECCcccccc-----cCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCC
Confidence 9999999999998643211 12235689999999999999999999 59999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 006758 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKN 334 (632)
Q Consensus 257 ~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~n 334 (632)
++||++||+++|++|++.||+|||||+||..+++|+.. |||+|||+||+|.++..++...+++||.+|+ ++.....
T Consensus 210 ~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~-~~~~~~~ 285 (381)
T PRK00257 210 AVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFF-GIPARVS 285 (381)
T ss_pred cccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHH-cCCCccc
Confidence 99999999999999999999999999866678889985 9999999999999999999999999999996 6654443
No 20
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=3.3e-54 Score=462.19 Aligned_cols=273 Identities=19% Similarity=0.297 Sum_probs=243.6
Q ss_pred EEEEeCCCCCCchHHhhccCCceEEecCCCCCcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHH
Q 006758 21 SVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALA 100 (632)
Q Consensus 21 ~VvvL~~~e~~~~e~e~L~~laeV~~~~~~~l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa 100 (632)
+|++.+. .+...+.|+.+.++...+...++.+.+.++|++++++.+++++++++ .++||+|+++++|+||||++++
T Consensus 2 kIl~d~~---~~~~~~~~~~~~ev~~~~~~~~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~ 77 (378)
T PRK15438 2 KILVDEN---MPYARELFSRLGEVKAVPGRPIPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDEAWL 77 (378)
T ss_pred EEEEeCC---cchHHHHHhhcCcEEEeCCCCCCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCHHHH
Confidence 4666653 34666788887888888777777778999999999988899999986 6899999999999999999999
Q ss_pred HhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHH
Q 006758 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATR 180 (632)
Q Consensus 101 ~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~ 180 (632)
+++||.|+|+||+|+.+||||++++||+++|+. . .+|.|+||||||+|+||+.+|++
T Consensus 78 ~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~-----------g------------~~L~gktvGIIG~G~IG~~vA~~ 134 (378)
T PRK15438 78 KQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD-----------G------------FSLHDRTVGIVGVGNVGRRLQAR 134 (378)
T ss_pred HHCCCEEEECCCcCchHHHHHHHHHHHHHhccC-----------C------------CCcCCCEEEEECcCHHHHHHHHH
Confidence 999999999999999999999999999998851 1 24899999999999999999999
Q ss_pred HhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChh----hHhhccHHHHhccCCCcEEEEcCCC
Q 006758 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 181 LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~----T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
|++|||+|++|||...... . ...+.+|++++++||||++|+|+|++ |+||||++.|++||+|++|||+|||
T Consensus 135 l~a~G~~V~~~dp~~~~~~----~-~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG 209 (378)
T PRK15438 135 LEALGIKTLLCDPPRADRG----D-EGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRG 209 (378)
T ss_pred HHHCCCEEEEECCcccccc----c-ccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCc
Confidence 9999999999998643211 1 12356999999999999999999996 9999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHH
Q 006758 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326 (632)
Q Consensus 257 ~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL 326 (632)
++||++||+++|++|++.||+|||||+||..+++|+..+| |+|||+||+|.+...++...+++|+.+|+
T Consensus 210 ~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~ 278 (378)
T PRK15438 210 AVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI 278 (378)
T ss_pred hhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986667888887665 99999999999999999999999999997
No 21
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=4.2e-53 Score=444.51 Aligned_cols=274 Identities=26% Similarity=0.349 Sum_probs=239.2
Q ss_pred cccceEEEEe-cCCCCCHHHHhcC-CCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcH
Q 006758 57 IEAAAAVLLH-SLAYLPRAAQRRL-RPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (632)
Q Consensus 57 i~dAdaIli~-s~~~L~~evL~~l-p~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~ 134 (632)
+.+...++.+ .....+.+.+.++ |++|+|+++|+|+||||+++|++|||+|+|+|+.++++|||++++++|.++|++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~ 137 (336)
T KOG0069|consen 58 IADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFS 137 (336)
T ss_pred ccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhh
Confidence 3344333333 3345666777766 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHH
Q 006758 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (632)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (632)
..+++ ...+.|. .......+..+.||||||+|+|+||+.+|++|++|||.+.|++|+....+..+..... ..++++
T Consensus 138 ~g~~~-~~~g~w~--~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~ 213 (336)
T KOG0069|consen 138 EGNEM-VRNGGWG--WAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEE 213 (336)
T ss_pred hhhhh-hhcCCcc--ccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHH
Confidence 99987 5788882 2222334568999999999999999999999999999999999987655533333333 569999
Q ss_pred HhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCC
Q 006758 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREM 294 (632)
Q Consensus 215 LL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~ 294 (632)
++++||+|++|||+|++|+|+||++.|.+||+|++|||+|||.++|++++++||++|+|+||+||||+++|+.+++|+++
T Consensus 214 ~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~ 293 (336)
T KOG0069|consen 214 LLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTL 293 (336)
T ss_pred HHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999866999999999
Q ss_pred CcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 006758 295 PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNA 335 (632)
Q Consensus 295 pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nv 335 (632)
+||++|||+|+.|.+++.+|+..++.|+.+|| .|+...+.
T Consensus 294 dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~-~g~~~~~~ 333 (336)
T KOG0069|consen 294 DNVVILPHIGSATLETREKMAEIVLNNLLAFF-SGKPLLTP 333 (336)
T ss_pred cceeEecccccCcHHHHHHHHHHHHHHHHHHH-ccCCCCCc
Confidence 99999999999999999999999999999997 55544433
No 22
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.7e-52 Score=435.62 Aligned_cols=262 Identities=19% Similarity=0.217 Sum_probs=227.5
Q ss_pred cccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHH
Q 006758 57 IEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLL 136 (632)
Q Consensus 57 i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~ 136 (632)
..+++++++... +...++||||++.++|+||||+++|+++||.++| +|+++.+||||++++||+++|++..+
T Consensus 32 ~~~a~~~~~~~~-------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~~ 103 (303)
T PRK06436 32 YYDAEAILIKGR-------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSN-AGAYSISVAEHAFALLLAWAKNICEN 103 (303)
T ss_pred cCCCCEEEecCC-------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEc-CCCCcHHHHHHHHHHHHHHHcChHHH
Confidence 457777765532 2345789999999999999999999998887766 58899999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-eecCCHHHH
Q 006758 137 ARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-RRMDTLNDL 215 (632)
Q Consensus 137 ~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-~~~~sL~eL 215 (632)
++. .+++.|... ..++|.|++|||||+|+||+.+|+++++|||+|++||++.... +. ....+++++
T Consensus 104 ~~~-~~~g~w~~~------~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~~~~l~el 170 (303)
T PRK06436 104 NYN-MKNGNFKQS------PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND------GISSIYMEPEDI 170 (303)
T ss_pred HHH-HHcCCCCCC------CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc------CcccccCCHHHH
Confidence 887 478999743 2357999999999999999999999999999999999975321 11 124689999
Q ss_pred hccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCC
Q 006758 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREM 294 (632)
Q Consensus 216 L~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~ 294 (632)
+++||+|++|||+|++|+++|+++.|+.||+|++|||+|||+++|++||+++|++|+|.||+||||++ |++.++ .+
T Consensus 171 l~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~ 247 (303)
T PRK06436 171 MKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET---NP 247 (303)
T ss_pred HhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC---CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 544444 68
Q ss_pred CcEEEcCCCC-CccHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCcCccCc
Q 006758 295 PNVLILPRSA-DYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENE 345 (632)
Q Consensus 295 pNVIiTPHiA-g~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn~~~~~~~~ 345 (632)
|||++|||++ ++|.++..++...+++||.+|+ .|+ |.|+|+.+ +|..+
T Consensus 248 ~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~-~g~-~~~~V~~~-~y~~~ 296 (303)
T PRK06436 248 DNVILSPHVAGGMSGEIMQPAVALAFENIKNFF-EGK-PKNIVRKE-EYIVR 296 (303)
T ss_pred CCEEECCccccccCHHHHHHHHHHHHHHHHHHH-cCC-CCceEchH-Hheee
Confidence 9999999976 5889999999999999999997 676 57999776 57554
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=5.7e-44 Score=346.21 Aligned_cols=177 Identities=35% Similarity=0.483 Sum_probs=150.1
Q ss_pred HHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc
Q 006758 123 MALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF 202 (632)
Q Consensus 123 LaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~ 202 (632)
|++||+++|++..++.+ .+++.|... .....++|.|+||||||+|+||+.+|+++++|||+|++|||+..... ..
T Consensus 1 i~l~L~~~R~~~~~~~~-~~~~~W~~~---~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~-~~ 75 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEA-QRNGEWASR---ERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE-GA 75 (178)
T ss_dssp HHHHHHHHTTHHHHHHH-HHTTBHHHH---TTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH-HH
T ss_pred ChHHHHHHhCHHHHHHH-HHcCCCCCC---cCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh-hc
Confidence 68999999999999988 488899111 12345789999999999999999999999999999999999985432 11
Q ss_pred ccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 203 PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 203 ~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
......+.+|++++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|.||+||||+
T Consensus 76 ~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~ 155 (178)
T PF02826_consen 76 DEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFE 155 (178)
T ss_dssp HHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-S
T ss_pred ccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCC
Confidence 12223567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCccccCCCcEEEcCCCC
Q 006758 283 G-PQWMEAWVREMPNVLILPRSA 304 (632)
Q Consensus 283 ~-P~~~~~pL~~~pNVIiTPHiA 304 (632)
+ |++.++|||++|||++|||+|
T Consensus 156 ~EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 156 PEPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp SSSSSTTHHHHTSTTEEEESS-T
T ss_pred CCCCCCCChHHcCCCEEEeCccC
Confidence 7 777788999999999999987
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=100.00 E-value=2.7e-43 Score=368.21 Aligned_cols=398 Identities=25% Similarity=0.351 Sum_probs=334.1
Q ss_pred CCCCCCEEEEeCCCCCCchHHhhccCCceEEecCCC---CCcccccccceEEEEecCCCCCHHHHhcCCCceEEEEeccc
Q 006758 15 NPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLG---RLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSS 91 (632)
Q Consensus 15 ~~~~kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~~---~l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG 91 (632)
|....|++.+++. .++..++.+|+.++.+-+++.. ++.+..+++|..-+......++++-+++++.||+|...|.|
T Consensus 27 p~h~~p~~aLld~-rdc~vemPilk~~atvafcdaqstqeIhekvLneavgam~yh~i~l~reDlEkfkalRv~~rig~g 105 (435)
T KOG0067|consen 27 PLHPRPLVALLDG-RDCGVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFKALRVIVRIGSG 105 (435)
T ss_pred CCCCCcchhhccc-ccccccchhhhcchheeeecccchHHHHHHHHHHhhhcceeeecccchhhHHHhhhhceeeeeccc
Confidence 3446777777764 4778888999999999888743 44556677776666666668999999999999999999999
Q ss_pred CCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCC---CCCccccccCcEEEEE
Q 006758 92 DRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQP---LCRGMRRCRGLVLGIV 168 (632)
Q Consensus 92 ~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~---~~~~~~~L~GktVGII 168 (632)
+|++|+.+|.+.||.|||.|+...+.+|+-++.+||.++|+.+...+. .+.+.|...... ...+....+|.++|++
T Consensus 106 ~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~-l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~ 184 (435)
T KOG0067|consen 106 YDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQA-LREGTCTQGLEQVREAACGLARIRGPTLGLI 184 (435)
T ss_pred cchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhh-hcccceeechhhhhhhhhccccccccceeee
Confidence 999999999999999999999999999999999999999999887775 578888654321 2234467899999999
Q ss_pred eCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCc
Q 006758 169 GRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (632)
Q Consensus 169 GlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GA 248 (632)
|+|++|+.++.++++||..|+.||++....- ....+...+.+|.+++.++|.+++||-+++.+.++|+.-.+..|++|+
T Consensus 185 g~gr~g~av~~~A~afg~~~ifydp~~~~g~-~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGa 263 (435)
T KOG0067|consen 185 GFGRTGQAVALRAKAFGFVVIFYDPYLIDGI-DKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGA 263 (435)
T ss_pred ccccccceehhhhhcccceeeeecchhhhhh-hhhcccceecccchhhhhccceeeecccCcccccccccccceeecccc
Confidence 9999999999999999999999999976553 233456667789999999999999999999999999999999999999
Q ss_pred EEEEcCCChhhcHHHHHHHHHcCCcceEE-eecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHH
Q 006758 249 FLVNTGSSQLLDDCAVKQLLIDGTLAGCA-LDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFF 327 (632)
Q Consensus 249 vLINvgRG~iVDe~AL~~AL~sg~I~GAa-LDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~ 327 (632)
+++|++||.++|+.+|.+||+.|+|.|++ -+ ....||.+.||.|+|||.+|+++.
T Consensus 264 flvnta~gglvdekaLaqaLk~G~i~~aa~~~------~~~~~l~d~pn~ic~~~ta~~~e~------------------ 319 (435)
T KOG0067|consen 264 FLVNTARGGLVDEKALAQALKSGRIRGAAPRS------FKQGPLKDAPNLICTPHTAWYSEA------------------ 319 (435)
T ss_pred eEeeecccccCChHHHHhhhccCceecccCcc------cccccccCCCCCCCCcccchhhHH------------------
Confidence 99999999999999999999999999877 11 111233344555555555554433
Q ss_pred cCCCCCccccCCcCccCcCcchhhhhhhcccccccccccccccccccccCCCccccccccccCCCCCcccCCCccccccc
Q 006758 328 DGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSAN 407 (632)
Q Consensus 328 ~G~~p~nvVn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (632)
T Consensus 320 -------------------------------------------------------------------------------- 319 (435)
T KOG0067|consen 320 -------------------------------------------------------------------------------- 319 (435)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcccccchhhhhhhhhhcccCCCCCCccccccCCcccCCCCCccccccc---cccCCCccccccCCCCcchhhcch
Q 006758 408 TKSDGRRSRSGKKAKKRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQA---SSRCASPEELRSRKTPIESIQEST 484 (632)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 484 (632)
+|+-.-.+ ++|.|+|++++.+ +|..+++|..
T Consensus 320 ---------------------------------------------~~~e~re~aa~eiR~ai~g~ip~~-l~~cvnkE~~ 353 (435)
T KOG0067|consen 320 ---------------------------------------------ASVELREVAALEIRRAITGRIPDS-LRNCVNKEFS 353 (435)
T ss_pred ---------------------------------------------HHHHHHHHHhhhhhhccCCCCchh-HHHHHhhhhc
Confidence 22222222 5678899999999 9999999999
Q ss_pred hhhhhhcccccccccccccccceEEEEEEecCCceEEeeecccccceEEeecccccCCCccceEEE-eecCccccccccc
Q 006758 485 SKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLI-CKSKDTIGLRSFT 563 (632)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 563 (632)
..++--++++..++.+++++ ++++|+.+-. +|||.+ ++|+++||+ +|+
T Consensus 354 ~~~~p~s~~~~~a~h~eL~g---~~~~y~~~~~---------------------------aap~~~paa~~~~i~~-~~~ 402 (435)
T KOG0067|consen 354 PTNAPWSGIDGQAFHPELNG---ATYRYPPGIV---------------------------AAPFILPAANEGIIPG-GIP 402 (435)
T ss_pred cccCCccccchhhcchhhhc---cccccCCcce---------------------------ecccCCcccccccccc-ccc
Confidence 99999999999999999999 7888877644 999999 999999999 999
Q ss_pred cCCceeeecccceEEEeeccccccccceeccccce
Q 006758 564 AGGKLLQINRRMEFVFASHSFDAWESWAIEGPLEE 598 (632)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (632)
+|++|+|+|+.||++|. ||++|++|.+|+++.|
T Consensus 403 ~~~~lp~v~~~~q~psp--n~~~~~~~n~eh~~~e 435 (435)
T KOG0067|consen 403 AGHNLPTVAHPSQAPSP--NQPTKHGDNREHPNDE 435 (435)
T ss_pred ccCCCccccCcccCCCC--CCcccCCccccCcCCC
Confidence 99999999999999999 9999999999998764
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.79 E-value=1.1e-18 Score=192.13 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=126.6
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHH
Q 006758 102 DLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS 181 (632)
Q Consensus 102 erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L 181 (632)
..||+|+|+|++++.++||+++++++++...+ .+.+. ..+.|++|+|||+|.||+.+|++|
T Consensus 213 ~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~-------~R~~~------------~~LaGKtVgVIG~G~IGr~vA~rL 273 (476)
T PTZ00075 213 ELLFPAINVNDSVTKSKFDNIYGCRHSLIDGI-------FRATD------------VMIAGKTVVVCGYGDVGKGCAQAL 273 (476)
T ss_pred CCCceEEEeCCcchHHHHHHHHHHHHHHHHHH-------HHhcC------------CCcCCCEEEEECCCHHHHHHHHHH
Confidence 36899999999999999999999999988332 22211 258999999999999999999999
Q ss_pred hhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcH
Q 006758 182 LSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDD 261 (632)
Q Consensus 182 kafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe 261 (632)
++|||+|+++++++.........++ ...+++++++.||||++|+ .|.++|+.+.|..||+|++|||+||+ |+
T Consensus 274 ~a~Ga~ViV~e~dp~~a~~A~~~G~-~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAiLINvGr~---d~ 345 (476)
T PTZ00075 274 RGFGARVVVTEIDPICALQAAMEGY-QVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAIVGNIGHF---DN 345 (476)
T ss_pred HHCCCEEEEEeCCchhHHHHHhcCc-eeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcEEEEcCCC---ch
Confidence 9999999999877543321222333 3458999999999999985 37899999999999999999999999 78
Q ss_pred HHHHHHHHcCCcceEEeecCCCCCCCC
Q 006758 262 CAVKQLLIDGTLAGCALDGAEGPQWME 288 (632)
Q Consensus 262 ~AL~~AL~sg~I~GAaLDVfE~P~~~~ 288 (632)
+.++++|+.+. ++|+++..|...
T Consensus 346 Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 346 EIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred HHhHHHHHhcC----CceeecccCCCC
Confidence 88888988643 789988643333
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.76 E-value=2.2e-18 Score=179.88 Aligned_cols=155 Identities=14% Similarity=0.117 Sum_probs=127.1
Q ss_pred CCCCHHHHhcCCCceEEEEecccCCccchH-HHHhcCcEEE------EcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 006758 69 AYLPRAAQRRLRPYQLILCLGSSDRTVDSA-LAADLGLRLI------HVDTSRAEEIADTVMALLLGLLRRTHLLARHAL 141 (632)
Q Consensus 69 ~~L~~evL~~lp~LK~I~~~gaG~D~VD~~-aa~erGI~Vt------Nvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~ 141 (632)
..+++++++++|. ++...+|+++.|++ +|+++||.|+ |++.+|+.++||+++++++...
T Consensus 80 ~~l~~~~l~~~~~---~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~----------- 145 (287)
T TIGR02853 80 VVLTPELLESTKG---HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHT----------- 145 (287)
T ss_pred ccccHHHHHhcCC---CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhc-----------
Confidence 4578899999983 66667788888888 8999999999 8999999999999999877320
Q ss_pred HhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc--eecCCHHHHhccC
Q 006758 142 SASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--RRMDTLNDLLAAS 219 (632)
Q Consensus 142 ~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~--~~~~sL~eLL~~A 219 (632)
. .+++|++++|||+|.||+.+|+.|++||++|.+++|+..........+. ....++.+++.++
T Consensus 146 ---~------------~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~a 210 (287)
T TIGR02853 146 ---D------------FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEI 210 (287)
T ss_pred ---C------------CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccC
Confidence 0 2478999999999999999999999999999999998643221111122 2235688899999
Q ss_pred CEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 220 DVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
|+|++|+|+ ++++++.++.||+++++||++..+
T Consensus 211 DiVint~P~-----~ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 211 DIVINTIPA-----LVLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred CEEEECCCh-----HHhCHHHHhcCCCCeEEEEeCcCC
Confidence 999999997 478899999999999999999854
No 27
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.71 E-value=5.9e-17 Score=149.66 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=79.0
Q ss_pred EEEeCCCCCCchHHhhccC-CceEEecCCCCCc--ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchH
Q 006758 22 VVALNCIEDCVLEQDSLAG-VALVEHVPLGRLA--DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSA 98 (632)
Q Consensus 22 VvvL~~~e~~~~e~e~L~~-laeV~~~~~~~l~--e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~ 98 (632)
|+++..+ .+...+.|++ + ++..++..... .+.++++|+++++...++++++++++|+||||++.|+|+|+||++
T Consensus 1 ili~~~~--~~~~~~~l~~~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~ 77 (133)
T PF00389_consen 1 ILITDPL--PDEEIERLEEGF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLE 77 (133)
T ss_dssp EEESSS---SHHHHHHHHHTS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HH
T ss_pred eEEeccC--CHHHHHHHHCCc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHH
Confidence 4555543 4556777777 6 88887732221 256889999999988779999999999999999999999999999
Q ss_pred HHHhcCcEEEEcCCCChHHHHHHH
Q 006758 99 LAADLGLRLIHVDTSRAEEIADTV 122 (632)
Q Consensus 99 aa~erGI~VtNvpg~na~aVAE~A 122 (632)
+|+++||.|+|+||+++.+||||+
T Consensus 78 ~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 78 AAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred HHhhCeEEEEEeCCcCCcchhccc
Confidence 999999999999999999999999
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.54 E-value=4.2e-14 Score=148.35 Aligned_cols=169 Identities=12% Similarity=0.123 Sum_probs=130.6
Q ss_pred cccccceEEEEecC----------------CCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCC-----
Q 006758 55 GKIEAAAAVLLHSL----------------AYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTS----- 113 (632)
Q Consensus 55 ~~i~dAdaIli~s~----------------~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~----- 113 (632)
+.+.++|+++..-. ..++.+.++.+|+++.+. .|.+.++++ +.|.++||.+++....
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~ 128 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI 128 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence 34677888875511 134678999999997555 588889988 7889999999987754
Q ss_pred -ChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEEC
Q 006758 114 -RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD 192 (632)
Q Consensus 114 -na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~d 192 (632)
++.++||.++.+.+... ..++.|++++|||+|.+|+.++..|+++|++|.++|
T Consensus 129 ~ns~~~aegav~~a~~~~--------------------------~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~ 182 (296)
T PRK08306 129 LNSIPTAEGAIMMAIEHT--------------------------PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGA 182 (296)
T ss_pred hccHhHHHHHHHHHHHhC--------------------------CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence 88999999777544110 023689999999999999999999999999999999
Q ss_pred CCCCCCCcccccCce--ecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 193 VPEGKGKVTFPSAAR--RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 193 r~~~~~~~~~~~g~~--~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
++..........+.. ...++.+.+.++|+||+++|. .+++++.++.|++|+++||++..
T Consensus 183 r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 183 RKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence 986432211122222 234678899999999999984 57889999999999999999874
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.54 E-value=2.6e-14 Score=157.50 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=102.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
+.|++|+|+|+|.||+.+|+++++|||+|+++++++.........+.. +.+++++++.+|||++ +..|+++|+.+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~----tTGt~~vI~~e 326 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVT----TTGNKDIIMVD 326 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEE----CCCCccchHHH
Confidence 689999999999999999999999999999999876432222333333 3478999999999997 34578999999
Q ss_pred HHhccCCCcEEEEcCC-ChhhcHHHHHHH--HHcCCcceEEeecCCCCC
Q 006758 240 CLQHIKPGAFLVNTGS-SQLLDDCAVKQL--LIDGTLAGCALDGAEGPQ 285 (632)
Q Consensus 240 ~L~~MK~GAvLINvgR-G~iVDe~AL~~A--L~sg~I~GAaLDVfE~P~ 285 (632)
.|+.||+|++|||+|| +..||+.+|.++ ++.+.+. +.+|+|+-|.
T Consensus 327 ~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 327 HMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 9999999999999999 689999999998 9999998 9999998654
No 30
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.44 E-value=5e-13 Score=145.76 Aligned_cols=119 Identities=17% Similarity=0.213 Sum_probs=101.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
+.|++|+|+|+|.||+.+|++++++|++|+++++++.........+. .+.++++++..+|+|+.+.. +.++|+.+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~v~~leeal~~aDVVItaTG----~~~vI~~~ 267 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKIGDIFITATG----NKDVIRGE 267 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC-EeCCHHHHHhcCCEEEECCC----CHHHHHHH
Confidence 78999999999999999999999999999999877643322223343 34578999999999988654 67899999
Q ss_pred HHhccCCCcEEEEcCCChh-hcHHHHHHHHHcCCcceEEeecCCC
Q 006758 240 CLQHIKPGAFLVNTGSSQL-LDDCAVKQLLIDGTLAGCALDGAEG 283 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~i-VDe~AL~~AL~sg~I~GAaLDVfE~ 283 (632)
.|..||+|++|+|+||+.+ ||.++|.+++.+....+..+|+|.-
T Consensus 268 ~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 268 HFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 9999999999999999998 9999999999888888899999873
No 31
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.42 E-value=3e-13 Score=143.06 Aligned_cols=93 Identities=13% Similarity=0.194 Sum_probs=77.9
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
..|+|+||||||+|.||+++|++|++||++|++|++...........+.. +.+++++++.||+|++|||+ ++|+++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~-v~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE-VMSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE-ECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 46899999999999999999999999999999998654332212222443 45999999999999999997 77899999
Q ss_pred HHHHhccCCCcEEEE
Q 006758 238 AECLQHIKPGAFLVN 252 (632)
Q Consensus 238 ~~~L~~MK~GAvLIN 252 (632)
.+.+..||+|++|+-
T Consensus 90 ~eil~~MK~GaiL~f 104 (335)
T PRK13403 90 AEVEENLREGQMLLF 104 (335)
T ss_pred HHHHhcCCCCCEEEE
Confidence 999999999998864
No 32
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.35 E-value=1.3e-12 Score=125.08 Aligned_cols=117 Identities=15% Similarity=0.229 Sum_probs=93.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc-HHHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN-AECL 241 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~-~~~L 241 (632)
++|||||+|.||..||++|...|++|.+||++....+.....++...+++.|++..||+|++++|..++++.++. ...+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 579999999999999999999999999999987554434445677789999999999999999999888888863 2278
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC
Q 006758 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (632)
Q Consensus 242 ~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf 281 (632)
..+++|.++||++....-....+.+.+....+. .+|+-
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vdap 119 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDAP 119 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccce--eeeee
Confidence 899999999999999999999999999876654 77753
No 33
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.29 E-value=8.3e-12 Score=130.51 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=103.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC-CCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--HH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK-GKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AE 239 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~-~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~--~~ 239 (632)
.+|||||+|.||..||++|...|+.|.+|||++.. .+.....|+....+..|+.+.+|+||+|+|..++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 47999999999999999999999999999999866 3333344777788999999999999999999999999985 57
Q ss_pred HHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.+..||+|+++||++..+......+.++++++.+. .||.
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDA 119 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDA 119 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEec
Confidence 99999999999999999999999999999998876 7885
No 34
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.25 E-value=1.8e-11 Score=134.38 Aligned_cols=141 Identities=21% Similarity=0.201 Sum_probs=103.4
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHH
Q 006758 102 DLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS 181 (632)
Q Consensus 102 erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L 181 (632)
+++++|+|++..+....-|...+.-......+. +.. ...+.|++|+|+|+|.||+.+|.+|
T Consensus 171 ~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~-------rat------------~~~l~Gk~VlViG~G~IG~~vA~~l 231 (425)
T PRK05476 171 ALKFPAINVNDSVTKSKFDNRYGTGESLLDGIK-------RAT------------NVLIAGKVVVVAGYGDVGKGCAQRL 231 (425)
T ss_pred CCCCCEEecCCcccCccccccHHHHhhhHHHHH-------Hhc------------cCCCCCCEEEEECCCHHHHHHHHHH
Confidence 578999999988776644433322222221110 000 0136899999999999999999999
Q ss_pred hhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChh-hc
Q 006758 182 LSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL-LD 260 (632)
Q Consensus 182 kafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~i-VD 260 (632)
+++|++|+++|+++.........+.. +.++++++..+|+|+.+. .+.++|+.+.|..||+|++++|+|+... +|
T Consensus 232 r~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~GailiNvG~~d~Eid 306 (425)
T PRK05476 232 RGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDGAILANIGHFDNEID 306 (425)
T ss_pred HhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCCCEEEEcCCCCCccC
Confidence 99999999999876443222222333 457899999999998875 3567899999999999999999999876 77
Q ss_pred HHHHHH
Q 006758 261 DCAVKQ 266 (632)
Q Consensus 261 e~AL~~ 266 (632)
.++|.+
T Consensus 307 ~~~L~~ 312 (425)
T PRK05476 307 VAALEE 312 (425)
T ss_pred hHHHhh
Confidence 777654
No 35
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.20 E-value=4.2e-11 Score=124.42 Aligned_cols=114 Identities=13% Similarity=0.167 Sum_probs=94.1
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhc-c-HHHH
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII-N-AECL 241 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI-~-~~~L 241 (632)
+|||||+|.||..+|+.|...|++|.+||++....+.....+.....++.+++.+||+|++|+|.++.++.++ + ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 4899999999999999999999999999998644332223344455688999999999999999988888775 3 3467
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEee
Q 006758 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279 (632)
Q Consensus 242 ~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLD 279 (632)
..+++|+++||+++..+.+..+|.+.+++..+. .+|
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~--~~~ 116 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID--YLD 116 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEe
Confidence 889999999999999999889999999987554 455
No 36
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.16 E-value=8.4e-11 Score=122.16 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=94.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--HHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AEC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~--~~~ 240 (632)
++|||||+|.||..+|+.+...|++|.+||++..........+.....++++++.+||+|++|+|.+..++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 479999999999999999999999999999986443222223444557899999999999999999888888764 346
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
+..+++|+++||+++..+....++.+.+.+..+. .+|.
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~--~~d~ 120 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE--MLDA 120 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 7889999999999999998888999998876554 4443
No 37
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.16 E-value=9.3e-11 Score=122.75 Aligned_cols=116 Identities=10% Similarity=0.105 Sum_probs=97.4
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--HHHH
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AECL 241 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~--~~~L 241 (632)
+|||||+|.||..+|+.|...|++|.+||++....+.....+.....++.++++.||+|++|+|....++.++. ...+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~ 82 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVC 82 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHh
Confidence 79999999999999999999999999999987544322233455567889999999999999999887777764 2467
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC
Q 006758 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (632)
Q Consensus 242 ~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf 281 (632)
..+++|.++||++++.+.....+.+.+.+..+. .+|.-
T Consensus 83 ~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~ldap 120 (296)
T PRK15461 83 EGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDVP 120 (296)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEcc
Confidence 789999999999999999999999999988776 67753
No 38
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.14 E-value=1.3e-10 Score=121.74 Aligned_cols=114 Identities=20% Similarity=0.265 Sum_probs=95.6
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhcc---CCEEEEccCCChhhHhhccHHH
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA---SDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~---ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
+|||||+|.||..+|++|...|.+|++||++..........+.....++++++.. +|+|++|+|..+.++.+++ ..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-DL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-HH
Confidence 6999999999999999999999999999998644332223345556789999876 6999999999888888884 67
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
+..+++|.++||+++....+..++.+.+.+..+. .+|.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vda 118 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVDC 118 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEeC
Confidence 7889999999999999999999999999887764 6884
No 39
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.11 E-value=9.9e-11 Score=113.18 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=73.8
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.+.||++.|+|||.+|+.+|+.|+++|++|.+++..+.....+...|. .+.++++++..+|+|+.+... .++|..
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf-~v~~~~~a~~~adi~vtaTG~----~~vi~~ 94 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGF-EVMTLEEALRDADIFVTATGN----KDVITG 94 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT--EEE-HHHHTTT-SEEEE-SSS----SSSB-H
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCc-EecCHHHHHhhCCEEEECCCC----ccccCH
Confidence 379999999999999999999999999999999998754433333344 456899999999999988653 578999
Q ss_pred HHHhccCCCcEEEEcCCChh-hcHHHHH
Q 006758 239 ECLQHIKPGAFLVNTGSSQL-LDDCAVK 265 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~i-VDe~AL~ 265 (632)
+.|.+||+|++|.|++.-.. +|-+.|.
T Consensus 95 e~~~~mkdgail~n~Gh~d~Eid~~~L~ 122 (162)
T PF00670_consen 95 EHFRQMKDGAILANAGHFDVEIDVDALE 122 (162)
T ss_dssp HHHHHS-TTEEEEESSSSTTSBTHHHHH
T ss_pred HHHHHhcCCeEEeccCcCceeEeecccc
Confidence 99999999999999998655 5555444
No 40
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.07 E-value=4e-10 Score=118.09 Aligned_cols=114 Identities=24% Similarity=0.285 Sum_probs=95.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhcc---CCEEEEccCCChhhHhhccHHH
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA---SDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~---ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
+|||||+|.||..+|++|...|.+|.+||++..........++....++++++.. +|+|++++|..+.+..++ ...
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~l 80 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DEL 80 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HHH
Confidence 6999999999999999999999999999998754432223455556789998876 699999999987888887 467
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
+..+++|.++||++++......++.+.+++..+. .+|+
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 7889999999999999999999999999988776 5675
No 41
>PLN02256 arogenate dehydrogenase
Probab=99.01 E-value=1.7e-09 Score=114.24 Aligned_cols=109 Identities=20% Similarity=0.205 Sum_probs=83.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHh-ccCCEEEEccCCChhhHhhccH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLL-AASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL-~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
-++++|||||+|.||+.+|+.++.+|.+|++|+++... ......+.....++++++ ..+|+|++|+|. ..+..++..
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~ 111 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRS 111 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHh
Confidence 46789999999999999999999999999999988532 211223444456788876 479999999996 467777754
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
-....++++++|++++.++-+..+++.+.+..
T Consensus 112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred hhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 33567899999999999776656666666543
No 42
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.97 E-value=1.3e-09 Score=122.01 Aligned_cols=114 Identities=12% Similarity=0.133 Sum_probs=96.3
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc----cCce---ecCCHHHHhcc---CCEEEEccCCChhhH
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP----SAAR---RMDTLNDLLAA---SDVISLHCAVTDETI 233 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~----~g~~---~~~sL~eLL~~---ADVV~l~lPlT~~T~ 233 (632)
+|||||+|.||..||++|...|++|.+|||+....+.... .++. ...++.+++.. +|+|++|+|..+.+.
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 5999999999999999999999999999998754432111 1322 45688998876 999999999999999
Q ss_pred hhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.++ ...+..|++|.++||++....-+...+.+.+.+..+. .||.
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~--flda 131 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLL--YLGM 131 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEeC
Confidence 998 5688899999999999999999999999999998876 6664
No 43
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.97 E-value=7.5e-10 Score=118.19 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=76.5
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccccCceecCCHHHHhccCCEEEEccCCChhhHhhc
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI 236 (632)
..|+|++|||||+|+||.++|+.|+.+|++|+++++...... .....+.. ..++.++++.||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 458999999999999999999999999999998876643221 11122343 34899999999999999997665 7788
Q ss_pred cHHHHhccCCCcEEEEcCCC
Q 006758 237 NAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG 256 (632)
+++.+..|++|++| -++.|
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHHhcCCCCCEE-EECCC
Confidence 77888999999988 55555
No 44
>PLN02712 arogenate dehydrogenase
Probab=98.96 E-value=1.7e-09 Score=125.18 Aligned_cols=113 Identities=18% Similarity=0.158 Sum_probs=88.0
Q ss_pred ccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhc-cCCEEEEccCCChhhHh
Q 006758 156 GMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA-ASDVISLHCAVTDETIQ 234 (632)
Q Consensus 156 ~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~-~ADVV~l~lPlT~~T~~ 234 (632)
.++.+.+++|||||+|.||+.+|+.|+.+|++|++||++... ......++....++++++. .+|+|++|+|. ..+..
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~ 440 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEK 440 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHH
Confidence 345678999999999999999999999999999999987532 2122234455678888876 58999999995 67888
Q ss_pred hccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
++.+-.+..||+|++|||++.++-...+++.+.+..
T Consensus 441 vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 441 VLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred HHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 887655557999999999999985555555555544
No 45
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.95 E-value=2.8e-09 Score=111.81 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=94.0
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH--HHH
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA--ECL 241 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~--~~L 241 (632)
+|||||+|.||..||++|...|++|.+||+++.. ......++....+..+++..||+|++|+|..+.++.++.. ..+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~-~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~ 80 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVA-DELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT 80 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhH-HHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence 6999999999999999999999999999987632 2222345556678999999999999999998888877632 367
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 242 ~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
..+++|.++|+++....-....+.+.+.+..+. .+|.
T Consensus 81 ~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 81 KASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 778999999999999998888899998887654 6775
No 46
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.91 E-value=3.1e-09 Score=116.63 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=84.5
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.+.|++|+|+|+|.||..+|+.++++|++|+++|+++.........|+. ..++++++..+|+|+.+.. +.++|+.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~-~~~~~e~v~~aDVVI~atG----~~~~i~~ 273 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE-VMTMEEAVKEGDIFVTTTG----NKDIITG 273 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE-EccHHHHHcCCCEEEECCC----CHHHHHH
Confidence 3689999999999999999999999999999999876544333334443 3467888999999998754 4578888
Q ss_pred HHHhccCCCcEEEEcCCChh-hcHHHHHH
Q 006758 239 ECLQHIKPGAFLVNTGSSQL-LDDCAVKQ 266 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~i-VDe~AL~~ 266 (632)
+.|..||+|++|||+|++.+ +|..+|..
T Consensus 274 ~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 274 EHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 88999999999999999876 77777654
No 47
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.89 E-value=4.9e-09 Score=109.97 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=90.6
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHH---hccCCEEEEccCCChhhHhhccHHH
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDL---LAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eL---L~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
+|||||+|.||..+|+.|...|.+|.+||++....+.....+.....++.++ +..+|+|++++|.. .+..++ .+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~l 79 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EEL 79 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HHH
Confidence 6999999999999999999999999999998754332222333334566554 45689999999987 788887 467
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf 281 (632)
...+++|.++||++.+...+...+.+.+.+..+. .+|..
T Consensus 80 ~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda~ 118 (298)
T TIGR00872 80 APTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDCG 118 (298)
T ss_pred HhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEecC
Confidence 7889999999999999888999999888876664 56653
No 48
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.85 E-value=5.1e-09 Score=109.43 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=102.6
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN-- 237 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~-- 237 (632)
...++||+||+|.||..|+..|...|++|++||++....+.....|+...+++.|+.+.||+||+++|...+.+.++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 357899999999999999999999999999999998766655566777889999999999999999999999998874
Q ss_pred HHHHhccCCCcEE-EEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 238 AECLQHIKPGAFL-VNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 238 ~~~L~~MK~GAvL-INvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
...|+.+++|... |+.+.-..--...|.+++...... .+|.
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vDA 154 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVDA 154 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEec
Confidence 3488888888888 899988877778899998877555 7775
No 49
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.85 E-value=6.7e-09 Score=115.77 Aligned_cols=115 Identities=14% Similarity=0.168 Sum_probs=96.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc----cC--ceecCCHHHHhc---cCCEEEEccCCChhhH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP----SA--ARRMDTLNDLLA---ASDVISLHCAVTDETI 233 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~----~g--~~~~~sL~eLL~---~ADVV~l~lPlT~~T~ 233 (632)
.+|||||+|.||..||++|...|++|.+||++....+.... .+ .....++++++. ++|+|++++|....+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 36999999999999999999999999999998754321111 12 234678999886 5899999999999999
Q ss_pred hhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.++ .+.+..|++|.+|||++.+...|...+.+.+.+..+. .||+
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~--flda 125 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGIL--YLGM 125 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEcC
Confidence 998 4678889999999999999999999999999998876 6664
No 50
>PLN02858 fructose-bisphosphate aldolase
Probab=98.85 E-value=7.9e-09 Score=127.66 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=101.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhc--cH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII--NA 238 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI--~~ 238 (632)
...+|||||+|.||..||++|...|.+|.+||++....+.....++...+++.++...||+|++|+|..+.++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 4567999999999999999999999999999998755443334566777899999999999999999999999887 34
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
..+..+++|.++|+++...+-....+.+.+.+..-....+|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 678889999999999999999999999999876622237886
No 51
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.84 E-value=6.4e-09 Score=108.28 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=90.6
Q ss_pred EEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--HHHHhcc
Q 006758 167 IVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AECLQHI 244 (632)
Q Consensus 167 IIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~--~~~L~~M 244 (632)
|||+|.||..||+.|...|.+|.+||++..........+.....++.+++.+||+|++|+|....++.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999986543322233455567899999999999999998888777773 4567789
Q ss_pred CCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 245 KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 245 K~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
++|.++||++....-....+.+.+.+..+. .+|.
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vda 114 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMDA 114 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEC
Confidence 999999999988877777788888876554 6774
No 52
>PLN02858 fructose-bisphosphate aldolase
Probab=98.83 E-value=8.3e-09 Score=127.47 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=98.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhc--cHH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII--NAE 239 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI--~~~ 239 (632)
.++|||||+|.||..||++|...|++|.+||++..........++....++.+++..||+|++|+|...+++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 478999999999999999999999999999998754332223345556789999999999999999999999887 345
Q ss_pred HHhccCCCcEEEEcCCChhhcHHHHHHHHHc--CCcceEEeecC
Q 006758 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLID--GTLAGCALDGA 281 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s--g~I~GAaLDVf 281 (632)
.+..|++|.++||++....-....+.+.+.+ ..+. .+|.-
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lDAP 445 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVDAP 445 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEEcc
Confidence 7888999999999999998888889998887 4443 67753
No 53
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.78 E-value=2.2e-08 Score=103.94 Aligned_cols=138 Identities=15% Similarity=0.108 Sum_probs=85.3
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce-ecCCHHHHhccCCEEEEccCCChhhHhhccHHHHh
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~-~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~ 242 (632)
+|||||+|.||..+|..|+..|.+|.+||++....+.....+.. ...+..+.+.+||+|++|+|... +..++ ++...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~~ 79 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLIP 79 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHHH
Confidence 69999999999999999999999999999876433222222221 12232357889999999999633 33444 45667
Q ss_pred ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC--CCCCCccccCCCcEEEcCCCC
Q 006758 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSA 304 (632)
Q Consensus 243 ~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~--P~~~~~pL~~~pNVIiTPHiA 304 (632)
.+++++++++++.-+.--.+++.+.. ...+.++.+-..+. ......-|+...++++||+-.
T Consensus 80 ~l~~~~ii~d~~Svk~~~~~~~~~~~-~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~ 142 (279)
T PRK07417 80 ALPPEAIVTDVGSVKAPIVEAWEKLH-PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTEN 142 (279)
T ss_pred hCCCCcEEEeCcchHHHHHHHHHHhh-CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCC
Confidence 78999999999986643222222211 11121111111110 001112366778899999754
No 54
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.78 E-value=1.7e-08 Score=112.55 Aligned_cols=113 Identities=13% Similarity=0.188 Sum_probs=92.4
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc-----CceecCCHHHHh---ccCCEEEEccCCChhhHhhc
Q 006758 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-----AARRMDTLNDLL---AASDVISLHCAVTDETIQII 236 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~-----g~~~~~sL~eLL---~~ADVV~l~lPlT~~T~~lI 236 (632)
|||||+|.||..||++|...|.+|.+||++....+..... ++....++.++. +.+|+|++++|..+.+..++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi 81 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI 81 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH
Confidence 8999999999999999999999999999987544321111 133456777766 46899999999988888888
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.+.+..+++|.+|||++.....|...+.+.+.+..+. .+|+
T Consensus 82 -~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~--fvda 122 (467)
T TIGR00873 82 -NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL--FVGS 122 (467)
T ss_pred -HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE--EEcC
Confidence 4677889999999999999999999999999887775 6665
No 55
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.72 E-value=9.3e-08 Score=99.55 Aligned_cols=129 Identities=13% Similarity=0.064 Sum_probs=90.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-------cc-----------------CceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-------PS-----------------AARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-------~~-----------------g~~~~~sL~eLL~~ 218 (632)
++|+|||.|.||..+|..+...|++|++||++....+... .. ......++.+.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 4799999999999999999999999999999864332100 00 12234678899999
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEE-EEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcE
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFL-VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvL-INvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNV 297 (632)
||+|+.|+|...+.+..+-.+..+.++++++| +|++.-.+ ..+.+.+. ..-...++..+ .|.. ..+=+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~-~~~r~~g~h~~-~Pv~------~~~Lv 150 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTK-RPERVIAMHFF-NPVH------KMKLV 150 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcC-CcccEEEEecC-CCcc------cCceE
Confidence 99999999988877666655677788999977 78877554 45555543 22233466656 4432 23455
Q ss_pred EEcCC
Q 006758 298 LILPR 302 (632)
Q Consensus 298 IiTPH 302 (632)
.+.|+
T Consensus 151 e~v~g 155 (288)
T PRK09260 151 ELIRG 155 (288)
T ss_pred EEeCC
Confidence 66665
No 56
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.72 E-value=4.1e-08 Score=105.72 Aligned_cols=135 Identities=21% Similarity=0.187 Sum_probs=89.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc--ccCce--ecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF--PSAAR--RMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~--~~g~~--~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
++|+|||+|.||.++|+.|+..|..|.+|+++........ ..+.. ...++++++.+||+|++|+|. ..+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHHH-
Confidence 4799999999999999999999998888887654322111 11111 135678899999999999997 45667763
Q ss_pred HHHh-ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCC---------CCccccCCCcEEEcCCCC
Q 006758 239 ECLQ-HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW---------MEAWVREMPNVLILPRSA 304 (632)
Q Consensus 239 ~~L~-~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~---------~~~pL~~~pNVIiTPHiA 304 (632)
+... .+++++++++++.-+.-..+++.+.+.. .. -.+..+ |.+ ....|+.....++||+-.
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~--~~ig~H--PMaG~e~sG~~aa~~~lf~g~~~il~~~~~ 149 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LI--RFVGGH--PMAGSHKSGVAAARADLFENAPWVLTPDDH 149 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CC--eEEeeC--CcCcCchhhHHHhcHHHHCCCcEEEecCCC
Confidence 3333 4889999999999775444444333211 11 233332 221 223567777789999754
No 57
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.72 E-value=5.8e-08 Score=101.93 Aligned_cols=140 Identities=18% Similarity=0.169 Sum_probs=90.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCcccccCc--eecCCHHHHhccCCEEEEccCCChhhHhhc
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAA--RRMDTLNDLLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~~~~g~--~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI 236 (632)
..++|+|||+|.||..+|..++..|. +|.+||++..........+. ....++++++..||+|++|+|.. .+..++
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~ 83 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA 83 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH
Confidence 34689999999999999999998885 89999998643221111221 22357788899999999999973 333443
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC--C-----CCCCCccccCCCcEEEcCCCCC
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE--G-----PQWMEAWVREMPNVLILPRSAD 305 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE--~-----P~~~~~pL~~~pNVIiTPHiAg 305 (632)
.+....+++++++++++..+.--.+++.+.+.. .+ ..+..+. . |......|+...+++++|+.+.
T Consensus 84 -~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~--~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 84 -AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GV--HFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred -HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CC--eEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC
Confidence 445567899999999988653323333333322 11 1333321 1 1112236777778999997543
No 58
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.70 E-value=9.1e-08 Score=105.87 Aligned_cols=134 Identities=18% Similarity=0.208 Sum_probs=94.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
++|+||| +|.||..+|+.|+..|.+|.+|+++..... .....++....++.+.+..||+|++|+|. ..+..++ .+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence 3799997 999999999999999999999998764321 11122444456788899999999999997 4556666 456
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCC-CCccccCCCcEEEcCCC
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW-MEAWVREMPNVLILPRS 303 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~-~~~pL~~~pNVIiTPHi 303 (632)
...+++++++++++..+....+++.+.+..+. ..+.. +|.. +..+++....++++|+-
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~---~~V~~--HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEGV---EILPT--HPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCCC---EEEEc--CCCCCCCCcccCCCEEEEecCC
Confidence 67789999999999866555556665544321 12222 2321 22356677889999975
No 59
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.70 E-value=8.6e-08 Score=100.43 Aligned_cols=135 Identities=19% Similarity=0.236 Sum_probs=90.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEEC--CCCCCCCcccccCcee--cCC-HHHHhccCCEEEEccCCChhhHhhc
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFD--VPEGKGKVTFPSAARR--MDT-LNDLLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~d--r~~~~~~~~~~~g~~~--~~s-L~eLL~~ADVV~l~lPlT~~T~~lI 236 (632)
-++|+|+|+|.||+.+|+.++..|..|.+++ ++....+.....++.. ..+ +.+.+..+|+|++++|. ..|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence 4689999999999999999999998775554 4443332222233322 123 36778889999999997 4566666
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCC---CCccccCCCcEEEcCCC
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW---MEAWVREMPNVLILPRS 303 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~---~~~pL~~~pNVIiTPHi 303 (632)
++....+|+|++|+++++-+----+++.+.+.++. . .+ --+|.. ...+++..-.+|+||.-
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~--~v--g~HPM~G~~~~~~lf~~~~~vltp~~ 145 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-R--FV--GGHPMFGPEADAGLFENAVVVLTPSE 145 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-e--eE--ecCCCCCCcccccccCCCEEEEcCCC
Confidence 34555899999999999977665566665554321 1 11 123432 24578888889999963
No 60
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.68 E-value=8.8e-08 Score=100.85 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=69.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
.+++|||||+|.||+.+|++|...|++|.+|+|+.. .++.++++++|+|++++|. ..+..++.. .
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l 67 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-V 67 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-H
Confidence 467899999999999999999999999999998752 4788999999999999998 577777733 3
Q ss_pred Hh-ccCCCcEEEEcCCChh
Q 006758 241 LQ-HIKPGAFLVNTGSSQL 258 (632)
Q Consensus 241 L~-~MK~GAvLINvgRG~i 258 (632)
.. .+++++++|++++|-.
T Consensus 68 ~~~~~~~~~ivi~~s~gi~ 86 (308)
T PRK14619 68 QALNLPPETIIVTATKGLD 86 (308)
T ss_pred HHhcCCCCcEEEEeCCccc
Confidence 23 4789999999987543
No 61
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.67 E-value=1.2e-07 Score=99.02 Aligned_cols=129 Identities=19% Similarity=0.103 Sum_probs=88.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cccc------------CceecCCHHHHhccC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPS------------AARRMDTLNDLLAAS 219 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~~~~------------g~~~~~sL~eLL~~A 219 (632)
++|||||+|.||..||..+...|++|++||++...... .... +.....+..+.++.|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 57999999999999999999999999999988643210 0000 112222333568999
Q ss_pred CEEEEccCCChhhHhhccHHHHhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEE
Q 006758 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (632)
Q Consensus 220 DVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLI-NvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVI 298 (632)
|+|+.|+|..++.+..+-.+....++++++|+ |++.-. ...+.+.+.. ....+++-.+.+| . ..+-+.
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~-~~r~~g~h~~~pp-~------~~~lve 153 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQR-PQQVIGMHFMNPP-P------IMKLVE 153 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCC-CcceEEEeccCCc-c------cCceEE
Confidence 99999999999988888778778899999987 777754 3345555432 1222334334322 2 234566
Q ss_pred EcCC
Q 006758 299 ILPR 302 (632)
Q Consensus 299 iTPH 302 (632)
+.|+
T Consensus 154 iv~g 157 (295)
T PLN02545 154 IIRG 157 (295)
T ss_pred EeCC
Confidence 7776
No 62
>PLN02712 arogenate dehydrogenase
Probab=98.64 E-value=5.5e-08 Score=112.76 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=80.8
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHh-ccCCEEEEccCCChhhHhhccH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLL-AASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL-~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
-+.++|||||+|.||+.+|+.++.+|++|++||++... ......++....++++++ ..+|+|++|+|. ..+..++..
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence 35578999999999999999999999999999987432 212223455566888866 569999999996 567888866
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
-.+..|++|++|+|+++-+..--+++.+.+.
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~ 158 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLP 158 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcC
Confidence 4456799999999998766433344444443
No 63
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.62 E-value=5.5e-07 Score=97.78 Aligned_cols=91 Identities=19% Similarity=0.149 Sum_probs=71.6
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
..++|+||| +|.||+.+|+.|+..|..|.+||+... .++++++++||+|++|+|... +..++. +
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~-~~~~~~-~ 161 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHL-TEEVIA-R 161 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHH-HHHHHH-H
Confidence 458899999 999999999999999999999998531 356788999999999999864 456663 3
Q ss_pred HHhccCCCcEEEEcCCChhhcHHHHHHH
Q 006758 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~iVDe~AL~~A 267 (632)
+..+++|++|+++++-+..-..++.+.
T Consensus 162 -l~~l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 162 -LPPLPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred -HhCCCCCcEEEECCCccHHHHHHHHHh
Confidence 444999999999988654334444443
No 64
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.62 E-value=6.9e-08 Score=102.68 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=71.8
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC-CCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE-GKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~-~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
|+|++|||||+|+||.++|+.|+.+|++|+++++.. .........+.. ..++.++++.||+|++++|.... ...+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 578999999999999999999999999988765543 222211123443 34688999999999999996433 344556
Q ss_pred HHHhccCCCcEEEEcCCChhh
Q 006758 239 ECLQHIKPGAFLVNTGSSQLL 259 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iV 259 (632)
+....|+++. +|.++-|--+
T Consensus 79 ei~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred HHHhhCCCCc-EEEEeCCccH
Confidence 6778888886 7888877644
No 65
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.57 E-value=2.5e-07 Score=95.70 Aligned_cols=89 Identities=24% Similarity=0.294 Sum_probs=64.5
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCcccccCce-ecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 164 VLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAAR-RMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~~~~g~~-~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
+|+|||+|.||..+|..|+..|. +|++||++..........+.. ...++.++. .||+|++|+|... +..++ .+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~l 78 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PKL 78 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HHH
Confidence 69999999999999999997774 899999876433222222322 234677765 5999999999744 44454 345
Q ss_pred HhccCCCcEEEEcCCC
Q 006758 241 LQHIKPGAFLVNTGSS 256 (632)
Q Consensus 241 L~~MK~GAvLINvgRG 256 (632)
.. ++++++|+++|.-
T Consensus 79 ~~-l~~~~iv~d~gs~ 93 (275)
T PRK08507 79 LD-IKENTTIIDLGST 93 (275)
T ss_pred hc-cCCCCEEEECccc
Confidence 55 8899999998763
No 66
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.57 E-value=6.3e-07 Score=95.71 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=81.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc--------------------cccCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT--------------------FPSAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~--------------------~~~g~~~~~sL~eLL~~ADVV 222 (632)
++|||||.|.||..+|..+...|++|++||+++...... .........++++.+++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 589999999999999999999999999999975422100 001123456899999999999
Q ss_pred EEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 223 SLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 223 ~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
+-++|-+.+.+.-+-++..+.++++++|- ++... +...++.+++.
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIla-SnTS~-l~~s~la~~~~ 132 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAIIA-SSTSG-LLPTDFYARAT 132 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEEE-ECCCc-cCHHHHHHhcC
Confidence 99999999999988888889999999554 44443 45667777764
No 67
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.56 E-value=3.8e-07 Score=98.97 Aligned_cols=96 Identities=14% Similarity=0.220 Sum_probs=74.5
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---cccc----CceecCCHHHHhccCCEEEEccCCC-h
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFPS----AARRMDTLNDLLAASDVISLHCAVT-D 230 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---~~~~----g~~~~~sL~eLL~~ADVV~l~lPlT-~ 230 (632)
.+.+.+|.|||.|.+|..+++.++++|++|.++|++....+. .+.. .......+.+.+..+|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 367788999999999999999999999999999987533211 0110 0011235778889999999998763 2
Q ss_pred hhHhhccHHHHhccCCCcEEEEcC
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
.+..+|+++.+..||++++|||++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 356789999999999999999997
No 68
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.56 E-value=1.3e-07 Score=100.94 Aligned_cols=102 Identities=19% Similarity=0.258 Sum_probs=85.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
+.||++.|.|||.+|+.+|.+|++.|++|++.+..+.....+... .+.+.++++....+||++.+.- ++++|..+
T Consensus 207 iaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~Md-Gf~V~~m~~Aa~~gDifiT~TG----nkdVi~~e 281 (420)
T COG0499 207 LAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMD-GFRVMTMEEAAKTGDIFVTATG----NKDVIRKE 281 (420)
T ss_pred ecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhc-CcEEEEhHHhhhcCCEEEEccC----CcCccCHH
Confidence 799999999999999999999999999999998877544333333 4456689999999999999875 47899999
Q ss_pred HHhccCCCcEEEEcCCChh-hcHHHHHH
Q 006758 240 CLQHIKPGAFLVNTGSSQL-LDDCAVKQ 266 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~i-VDe~AL~~ 266 (632)
.|..||+|+++.|.|.-.+ ||...|.+
T Consensus 282 h~~~MkDgaIl~N~GHFd~EI~~~~L~~ 309 (420)
T COG0499 282 HFEKMKDGAILANAGHFDVEIDVAGLEE 309 (420)
T ss_pred HHHhccCCeEEecccccceeccHHHHHH
Confidence 9999999999999998666 66666543
No 69
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.56 E-value=5.7e-08 Score=107.07 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=73.2
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC------CCCCCcccccCceecCCHHHHhccCCEEEEccCCCh
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVP------EGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~------~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
...|+|++|+|||+|.+|..-|..|+-.|++|.+--|. ...-..+...+. .+.++.|+++.||+|++.+|.+
T Consensus 31 ~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF-~v~~~~Ea~~~ADvVviLlPDt- 108 (487)
T PRK05225 31 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF-KVGTYEELIPQADLVINLTPDK- 108 (487)
T ss_pred hHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC-ccCCHHHHHHhCCEEEEcCChH-
Confidence 35799999999999999998888888888877743333 211111111232 4578999999999999999998
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCChh
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
. .+.|..+.+..||+|++|. .+.|--
T Consensus 109 ~-q~~v~~~i~p~LK~Ga~L~-fsHGFn 134 (487)
T PRK05225 109 Q-HSDVVRAVQPLMKQGAALG-YSHGFN 134 (487)
T ss_pred H-HHHHHHHHHhhCCCCCEEE-ecCCce
Confidence 3 6777799999999999865 445543
No 70
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.55 E-value=3.6e-07 Score=95.66 Aligned_cols=160 Identities=19% Similarity=0.132 Sum_probs=101.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------ccccC-------------ceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSA-------------ARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~sL~eLL~~ 218 (632)
++|||||.|.||..||..+...|++|++||+++...+. ....+ .....++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 37999999999999999999999999999998754321 11111 1134567 55899
Q ss_pred CCEEEEccCCChhhHhhccHHHHhcc-CCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcE
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHI-KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~M-K~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNV 297 (632)
||+|+-++|-+.+.+.-+-...-+.+ +++++|++.+++-.+ .++..++.. .=..+++..|.+|+ .+|-|
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~-~~r~~g~hf~~P~~-------~~~lv 154 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKR-PGRVLGLHFFNPVP-------VLPLV 154 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-CccEEEEecCCCcc-------cCceE
Confidence 99999999999998888776554545 899999988776544 344444432 11224555555322 23555
Q ss_pred EEcCCCCCccHHHHHHHHHHHHHHHHHHHH--cCCCCCccccCCcCcc
Q 006758 298 LILPRSADYSEEVWMEIRDKAISVLQTFFF--DGVIPKNAISDTEGCE 343 (632)
Q Consensus 298 IiTPHiAg~T~ea~~~~~~~a~~nL~~fL~--~G~~p~nvVn~~~~~~ 343 (632)
=++||.+ .+.++.+ .+..|+. -|+.|..+ +...|+.
T Consensus 155 Elv~~~~-T~~~~~~--------~~~~~~~~~lgk~pv~v-~d~pGfi 192 (286)
T PRK07819 155 ELVPTLV-TSEATVA--------RAEEFASDVLGKQVVRA-QDRSGFV 192 (286)
T ss_pred EEeCCCC-CCHHHHH--------HHHHHHHHhCCCCceEe-cCCCChH
Confidence 6777644 3333333 3333322 25555543 5555554
No 71
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.55 E-value=4.8e-07 Score=92.66 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=76.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC----EEEEE-CCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKM----SVLYF-DVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm----~V~~~-dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++|||||+|+||..||+.|...|. +|++| +++..........++....+..+++.+||+|++|+| ......++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence 369999999999999999998887 89999 887643322222355556788899999999999997 456777763
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL 268 (632)
+....++++.++|++.-| +..+.+.+.+
T Consensus 80 -~l~~~~~~~~~iIs~~~g--~~~~~l~~~~ 107 (266)
T PLN02688 80 -ELRPLLSKDKLLVSVAAG--ITLADLQEWA 107 (266)
T ss_pred -HHHhhcCCCCEEEEecCC--CcHHHHHHHc
Confidence 455667899999988765 3555666554
No 72
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.54 E-value=8.2e-07 Score=92.57 Aligned_cols=140 Identities=11% Similarity=0.031 Sum_probs=92.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----------------c---------ccCceecCCHHHHhc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT----------------F---------PSAARRMDTLNDLLA 217 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~----------------~---------~~g~~~~~sL~eLL~ 217 (632)
++|+|||.|.||..+|..+...|.+|++||++....+.. . ........++++.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 479999999999999999999999999999875321100 0 012223568889999
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcE
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNV 297 (632)
.||+|+.++|...+.+.-+-++....++++++|+..+++- ....+.+.+... -...++-.| +| .+.+|.|
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~-~r~vg~Hf~-~p------~~~~~lv 153 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRP-EKFLALHFA-NE------IWKNNTA 153 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCc-ccEEEEcCC-CC------CCcCCeE
Confidence 9999999999776655555456667789999885544433 345566665421 122333222 22 3367888
Q ss_pred EEcCCCCCccHHHHHH
Q 006758 298 LILPRSADYSEEVWME 313 (632)
Q Consensus 298 IiTPHiAg~T~ea~~~ 313 (632)
.+.|+-. .++++...
T Consensus 154 evv~~~~-t~~~~~~~ 168 (287)
T PRK08293 154 EIMGHPG-TDPEVFDT 168 (287)
T ss_pred EEeCCCC-CCHHHHHH
Confidence 8998744 34444443
No 73
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.52 E-value=8.7e-07 Score=96.31 Aligned_cols=120 Identities=19% Similarity=0.182 Sum_probs=82.8
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhh-CCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 161 RGLVLGIVGR-SASARALATRSLS-FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~Lka-fGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.-.+|+|||+ |.||+.+|+.++. +|.+|++||+... ...++.+++.+||+|++|+|. ..+..+|.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv-~~~~~~l~- 69 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPI-RHTAALIE- 69 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCH-HHHHHHHH-
Confidence 4578999999 9999999999995 6999999998521 124678889999999999997 34455553
Q ss_pred HHH---hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC-CCCCCC--CccccCCCcEEEcCC
Q 006758 239 ECL---QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA-EGPQWM--EAWVREMPNVLILPR 302 (632)
Q Consensus 239 ~~L---~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf-E~P~~~--~~pL~~~pNVIiTPH 302 (632)
+.. ..+++|++++++++-+---.+++ +.. .. ++. -+|... .+.+++.-++++||.
T Consensus 70 ~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~-~~-----~fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 70 EYVALAGGRAAGQLWLDVTSIKQAPVAAM---LAS-QA-----EVVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred HHhhhhcCCCCCeEEEECCCCcHHHHHHH---Hhc-CC-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 222 24899999999999663222222 211 11 111 134432 235777788999996
No 74
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.51 E-value=8.9e-07 Score=92.30 Aligned_cols=138 Identities=17% Similarity=0.120 Sum_probs=89.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------ccC-------------ceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSA-------------ARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~sL~eLL~~ 218 (632)
++|+|||.|.||..+|..+...|.+|++||++....+... ..+ .....+++ .+.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 5799999999999999999999999999998754322100 001 22345665 4789
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcE
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLI-NvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNV 297 (632)
||+|+.++|-..+.+..+-.+....++++++|+ |++.-.+ .+|.+.+.. .-...++-.+.+ ++ -.+-+
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~-~~r~~g~h~~~p-~~------~~~~v 152 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDR-PERFIGIHFMNP-VP------VMKLV 152 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEeeccCC-cc------cCceE
Confidence 999999999887766555567778889999998 6665443 356666532 112234444443 22 12445
Q ss_pred EEcCCCCCccHHHHHH
Q 006758 298 LILPRSADYSEEVWME 313 (632)
Q Consensus 298 IiTPHiAg~T~ea~~~ 313 (632)
-+.||.+ .+++..+.
T Consensus 153 ei~~g~~-t~~~~~~~ 167 (292)
T PRK07530 153 ELIRGIA-TDEATFEA 167 (292)
T ss_pred EEeCCCC-CCHHHHHH
Confidence 5677644 34444333
No 75
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.45 E-value=4.8e-07 Score=90.20 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=82.5
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc-CceecCCHHHHhc-cCCEEEEccCCChhhHhhc
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-AARRMDTLNDLLA-ASDVISLHCAVTDETIQII 236 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~-g~~~~~sL~eLL~-~ADVV~l~lPlT~~T~~lI 236 (632)
+++|++|+|+|+|+||+.+|+.|..+|++|+++|++.......... +...+ +.++++. +||+++.|.. .++|
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~-----~~~I 98 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCAL-----GGVI 98 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccc-----cccc
Confidence 5899999999999999999999999999999999876432211111 33333 4466665 7999987665 3689
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+++.+..|+ ..+++.-+-+.+.| ..-.+.|++..|.
T Consensus 99 ~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 99 NDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred CHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 999999997 56889999998876 4566677777775
No 76
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.43 E-value=1.7e-06 Score=91.23 Aligned_cols=132 Identities=21% Similarity=0.196 Sum_probs=83.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------ccccC-------------ceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSA-------------ARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~sL~eLL~~ 218 (632)
++|+|||.|.||..+|..+...|.+|.+||++...... ....+ .....++.++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 36999999999999999999999999999998632210 00111 2345688899999
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEE
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVI 298 (632)
||+|+.++|...+.+..+-.+.-..+++.++++.... ......+.+.+..... ...|-+-+|+. -.|=|.
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts--~~~~~~la~~~~~~~~--~~~~hp~~p~~------~~~lve 152 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTS--ALLASAFTEHLAGRER--CLVAHPINPPY------LIPVVE 152 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC--CCCHHHHHHhcCCccc--EEEEecCCCcc------cCceEE
Confidence 9999999998765444443333333455555543333 3345667777644222 45555544432 123356
Q ss_pred EcCCCC
Q 006758 299 ILPRSA 304 (632)
Q Consensus 299 iTPHiA 304 (632)
++||-+
T Consensus 153 iv~~~~ 158 (308)
T PRK06129 153 VVPAPW 158 (308)
T ss_pred EeCCCC
Confidence 788744
No 77
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.43 E-value=1.9e-06 Score=96.87 Aligned_cols=119 Identities=15% Similarity=0.135 Sum_probs=83.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-------------------cccC-ceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-------------------FPSA-ARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-------------------~~~g-~~~~~sL~eLL~~ADVV 222 (632)
++|||||.|.||..+|..+...|++|++||+++...+.. ...+ ....+++.+++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 479999999999999999999999999999986432210 0012 34567899999999999
Q ss_pred EEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCC
Q 006758 223 SLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ 285 (632)
Q Consensus 223 ~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~ 285 (632)
+.++|-..+.+..+-++.-..++++++|+....| + ....|.+.+.... ...++-+-+|+
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg-i-~~s~l~~~~~~~~--r~~~~hP~nP~ 143 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSG-F-LPSDLQEGMTHPE--RLFVAHPYNPV 143 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC-C-CHHHHHhhcCCcc--eEEEEecCCCc
Confidence 9999988876765545555667888765444444 3 2456766664422 24556554443
No 78
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.43 E-value=2.6e-06 Score=93.24 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=74.7
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-------------------ccC-ceecCCHHHHhccCCEEE
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-------------------PSA-ARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-------------------~~g-~~~~~sL~eLL~~ADVV~ 223 (632)
+|||||+|.||..+|..|...|.+|++||++........ ..+ .....++.+++++||+|+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi 81 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII 81 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence 699999999999999999999999999998764322000 012 334467888899999999
Q ss_pred EccCCChh------hHhhc--cHHHHhccCCCcEEEEcCCChhhcHHHHHHHH
Q 006758 224 LHCAVTDE------TIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (632)
Q Consensus 224 l~lPlT~~------T~~lI--~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL 268 (632)
+|+|.... ...+. -......+++|.++|+.+.-.+--...+.+.+
T Consensus 82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~ 134 (411)
T TIGR03026 82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI 134 (411)
T ss_pred EEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence 99997532 11222 13456778999999999865444445565433
No 79
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.42 E-value=2.5e-07 Score=89.65 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=66.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC-CCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG-KGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~-~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
|+|++|+|||||..|.+.|.+|+..|++|++-.+... .-+..... ...+.++.|..+.||+|++.+|..-+ ..++.+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~-Gf~v~~~~eAv~~aDvV~~L~PD~~q-~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKAD-GFEVMSVAEAVKKADVVMLLLPDEVQ-PEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHT-T-ECCEHHHHHHC-SEEEE-S-HHHH-HHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHC-CCeeccHHHHHhhCCEEEEeCChHHH-HHHHHH
Confidence 6899999999999999999999999999999887764 22222223 34456999999999999999996433 345567
Q ss_pred HHHhccCCCcEEEEcCCCh
Q 006758 239 ECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~ 257 (632)
+....||+|+.|+ .+.|-
T Consensus 80 ~I~p~l~~G~~L~-fahGf 97 (165)
T PF07991_consen 80 EIAPNLKPGATLV-FAHGF 97 (165)
T ss_dssp HHHHHS-TT-EEE-ESSSH
T ss_pred HHHhhCCCCCEEE-eCCcc
Confidence 7888999999865 44554
No 80
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.41 E-value=1.4e-06 Score=96.33 Aligned_cols=107 Identities=10% Similarity=0.072 Sum_probs=78.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc----------------eecCCHHHHhccCCEEEE
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA----------------RRMDTLNDLLAASDVISL 224 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~----------------~~~~sL~eLL~~ADVV~l 224 (632)
..++|||||+|.||..+|..+.. |++|++||++....+. +..|. ....+..+.+++||+|++
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~-l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILE-LKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHH-HHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 34689999999999999999877 7999999998754331 11111 123343457899999999
Q ss_pred ccCCC------hhhHhhcc--HHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 225 HCAVT------DETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 225 ~lPlT------~~T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
|+|.. ++...++. ......+++|.++|+.+.-.+--.+.+++.+.
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l 135 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPIL 135 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHH
Confidence 99976 34455553 45678899999999999988877776544443
No 81
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.40 E-value=7.6e-07 Score=94.16 Aligned_cols=78 Identities=22% Similarity=0.355 Sum_probs=67.7
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.||+|+|||.| .||+.||.+|...|++|.+|++.. .++.++.++||+|+++++.. +++.
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~----~~v~ 217 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRP----RLID 217 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCCh----hccc
Confidence 5899999999996 999999999999999999998653 27899999999999999963 4566
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
+.. +|+|+++||+|--.
T Consensus 218 ~~~---ik~GaiVIDvgin~ 234 (301)
T PRK14194 218 ADW---LKPGAVVIDVGINR 234 (301)
T ss_pred Hhh---ccCCcEEEEecccc
Confidence 544 89999999999654
No 82
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.40 E-value=2.6e-07 Score=80.23 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=63.4
Q ss_pred EEEEEeCChhhHHHHHHHhhCC---CEEEEE-CCCCCCCCcc-cccCceecC-CHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 164 VLGIVGRSASARALATRSLSFK---MSVLYF-DVPEGKGKVT-FPSAARRMD-TLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG---m~V~~~-dr~~~~~~~~-~~~g~~~~~-sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
+|||||+|+||..+++.+...| .+|.++ ++++...... ...+..... +..+++..||+|++++|-. ....++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence 6999999999999999999999 899955 8886533211 112223333 7899999999999999952 233333
Q ss_pred HHHHhccCCCcEEEEcCCC
Q 006758 238 AECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG 256 (632)
.+. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 333 667789999998654
No 83
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.40 E-value=9.2e-07 Score=90.34 Aligned_cols=115 Identities=22% Similarity=0.298 Sum_probs=99.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHH---hccCCEEEEccCCChhhHhhccHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDL---LAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eL---L~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
++||.||+|+||..+.++|+.-|.+|++||++....+.....++....+|+++ |...-+|.+++|....|..+|+ +
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence 46899999999999999999999999999999876654445556666777766 5567999999999988888874 6
Q ss_pred HHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.-..|.+|-++|+-|...--|.....+.|.+..|. .|||
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~ 118 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDV 118 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEec
Confidence 77888999999999999999999999999999997 8998
No 84
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.40 E-value=9.6e-07 Score=103.15 Aligned_cols=140 Identities=15% Similarity=0.126 Sum_probs=90.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCCcccccCce--ecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGKVTFPSAAR--RMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--m~V~~~dr~~~~~~~~~~~g~~--~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
++|||||+|.||..+|+.++..| .+|++||++..........+.. ...++.+++..+|+|++|+|.. .+..++ .
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 67999999999999999999888 5899999986443221222322 2356888899999999999963 445554 3
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc---eEEeecCCC--CCCCCccccCCCcEEEcCCCC
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA---GCALDGAEG--PQWMEAWVREMPNVLILPRSA 304 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~---GAaLDVfE~--P~~~~~pL~~~pNVIiTPHiA 304 (632)
.....+++++++++++..+..-.+++.+.+....+. ...+-.-+. .......|+.-.+++++|+..
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~ 152 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAE 152 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCC
Confidence 444567889999999986543344555554332221 011100010 112234577777888888644
No 85
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.39 E-value=1.5e-06 Score=95.66 Aligned_cols=107 Identities=10% Similarity=0.088 Sum_probs=75.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce--ecCCHHHH---------------hccCCEEEEc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDTLNDL---------------LAASDVISLH 225 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~--~~~sL~eL---------------L~~ADVV~l~ 225 (632)
++|+|||+|.||..+|..|+..|.+|++||++....+. ...+.. .-..++++ ++.||+|++|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~-l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT-INRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH-HHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 67999999999999999999999999999998653331 111110 01233333 3479999999
Q ss_pred cCCC------hhhHhhc--cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 226 CAVT------DETIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 226 lPlT------~~T~~lI--~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
+|.. ++...+. -......+++|+++|+.+.-.+--.+.+...|.+
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 9974 2223332 2456778999999999998776666666666654
No 86
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.37 E-value=8.9e-07 Score=82.88 Aligned_cols=115 Identities=19% Similarity=0.173 Sum_probs=81.1
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCcccc-cCc----eecCCHHHHhccCCEEEEccCCChh-h
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVTFP-SAA----RRMDTLNDLLAASDVISLHCAVTDE-T 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~~~-~g~----~~~~sL~eLL~~ADVV~l~lPlT~~-T 232 (632)
+.+++++|+|.|.||..+++.+...| .+|.++|++......... .+. ....++.+++.++|+|++++|.... .
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~ 96 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPG 96 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCC
Confidence 56889999999999999999999886 789999988643321111 111 2345778889999999999998654 1
Q ss_pred Hh-hccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC
Q 006758 233 IQ-IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (632)
Q Consensus 233 ~~-lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf 281 (632)
.. .+.. ..++++.+++|++..+.. . .|.+.+++..+. .++..
T Consensus 97 ~~~~~~~---~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~~--~v~g~ 139 (155)
T cd01065 97 DELPLPP---SLLKPGGVVYDVVYNPLE-T-PLLKEARALGAK--TIDGL 139 (155)
T ss_pred CCCCCCH---HHcCCCCEEEEcCcCCCC-C-HHHHHHHHCCCc--eeCCH
Confidence 12 2332 236899999999886533 3 777777776543 44443
No 87
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.35 E-value=2.8e-06 Score=95.91 Aligned_cols=116 Identities=20% Similarity=0.228 Sum_probs=85.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------ccccC-------------ceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSA-------------ARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~sL~eLL~~ 218 (632)
++|||||.|.||..||..+...|++|++||++....+. ....+ +....++++ +.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 57999999999999999999999999999998754321 01112 234567766 569
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEE-EEcCCChhhcHHHHHHHHHcCCcceEEeecCCC
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFL-VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG 283 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvL-INvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~ 283 (632)
||+||.++|-..+.+..+-.+.-..++++++| +|++.-.+ .+|..++.. .=..+++..|.+
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~P 148 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFNP 148 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecCC
Confidence 99999999999998888776655667899999 59988665 356666542 122346666664
No 88
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.35 E-value=1.2e-06 Score=92.18 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=69.0
Q ss_pred cccCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|++|.|||.|.+ |+.+|.+|...|++|.++.... .+|.+.+++||+|+.++| +.++|+
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------~~l~~~~~~ADIVV~avG----~~~~i~ 216 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------RDLAAHTRQADIVVAAVG----KRNVLT 216 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------CCHHHHhhhCCEEEEcCC----CcCccC
Confidence 489999999999999 9999999999999999976431 378899999999999999 457898
Q ss_pred HHHHhccCCCcEEEEcCCChh
Q 006758 238 AECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i 258 (632)
. ..+|+|+++||+|.-.+
T Consensus 217 ~---~~ik~gavVIDVGin~~ 234 (285)
T PRK14189 217 A---DMVKPGATVIDVGMNRD 234 (285)
T ss_pred H---HHcCCCCEEEEcccccc
Confidence 7 66899999999997553
No 89
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.34 E-value=6.9e-07 Score=93.73 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=80.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
+.||.+.|.|||.+|+..|+.|++||++|++....+.... ........+.+++|+..+.||++.+.- .+.+|..+
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~AL-QAaMeG~~V~tm~ea~~e~difVTtTG----c~dii~~~ 286 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICAL-QAAMEGYEVTTLEEAIREVDIFVTTTG----CKDIITGE 286 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHH-HHHhhccEeeeHHHhhhcCCEEEEccC----CcchhhHH
Confidence 5899999999999999999999999999999987775433 223345567899999999999998865 47889999
Q ss_pred HHhccCCCcEEEEcCCChh
Q 006758 240 CLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~i 258 (632)
+|.+||.++++.|+|.-.+
T Consensus 287 H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 287 HFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHhCcCCcEEeccccccc
Confidence 9999999999999988554
No 90
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.32 E-value=6.4e-06 Score=86.00 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=80.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----------c----ccC-------------ceecCCHHHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT----------F----PSA-------------ARRMDTLNDL 215 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~----------~----~~g-------------~~~~~sL~eL 215 (632)
++|+|||.|.||..+|..+...|++|++||++....+.. . ..+ .....++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 579999999999999999999999999999886432200 0 001 1122345 56
Q ss_pred hccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 216 L~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
+++||+|+.++|-..+.+.-+-++.-..++++++|+.+..|- ...+|.+.+.. .-..+++-.|.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~-~~r~ig~hf~~ 146 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALER-KDRFIGMHWFN 146 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCC-cccEEEEecCC
Confidence 789999999999877655555455556789999999887774 45666666643 22234444444
No 91
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.31 E-value=1e-06 Score=93.34 Aligned_cols=103 Identities=15% Similarity=0.076 Sum_probs=75.8
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--------cC------ceecCCHHHHhccCCEEEEccC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--------SA------ARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~--------~g------~~~~~sL~eLL~~ADVV~l~lP 227 (632)
.++|+|||.|.||..+|.+|...|.+|.+|+|+....+.... .+ .....++.+++..+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 357999999999999999999999999999997532110000 01 3345688898999999999999
Q ss_pred CChhhHhhccHHHHhccCCCcEEEEcCCC-hhhc--HHHHHHHHHc
Q 006758 228 VTDETIQIINAECLQHIKPGAFLVNTGSS-QLLD--DCAVKQLLID 270 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~GAvLINvgRG-~iVD--e~AL~~AL~s 270 (632)
... + .+.+..++++.++|+++.| ..-+ ...+.+.+.+
T Consensus 84 ~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 752 2 4566788999999999997 3332 3455555544
No 92
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.31 E-value=1.1e-06 Score=91.62 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=75.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC----EEEEECCCCCCCCcccc-cCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKM----SVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm----~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++|||||+|+||.+||+.|...|. +|+++|++....+.... .++....+..+++.+||+|++|+|- .....++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence 479999999999999999987664 79999987654332221 3444556788899999999999994 6666666
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL 268 (632)
.+....+++++++|.+.-|- +.+.|.+.|
T Consensus 81 ~~l~~~~~~~~lvISi~AGi--~i~~l~~~l 109 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAGK--SIKSTENEF 109 (272)
T ss_pred HHHHHhhcCCcEEEEeCCCC--cHHHHHHhc
Confidence 34445578899999998874 444555554
No 93
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.29 E-value=7.1e-06 Score=85.17 Aligned_cols=139 Identities=16% Similarity=0.091 Sum_probs=89.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cccc-------------CceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPS-------------AARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~~~~-------------g~~~~~sL~eLL~~ 218 (632)
++|+|||.|.||..+|..+...|.+|++||++....+. .... ......+++ .+.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 47999999999999999999999999999987643310 0001 112234555 4789
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEE
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVI 298 (632)
||+|+.++|-..+.+.-+-++....++++++|+....| +....|.+.+... -...++--+. |.+ -.|-|-
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~-~r~ig~h~~~-P~~------~~~~ve 152 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRP-DKVIGMHFFN-PVP------VMKLVE 152 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCC-cceEEeeccC-Ccc------cCccEE
Confidence 99999999987777655556677788999999555444 4555777777432 1222333333 222 234555
Q ss_pred EcCCCCCccHHHHHH
Q 006758 299 ILPRSADYSEEVWME 313 (632)
Q Consensus 299 iTPHiAg~T~ea~~~ 313 (632)
+.|+ .+.+.+..+.
T Consensus 153 v~~g-~~t~~e~~~~ 166 (282)
T PRK05808 153 IIRG-LATSDATHEA 166 (282)
T ss_pred EeCC-CCCCHHHHHH
Confidence 7776 3344444433
No 94
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.29 E-value=6.1e-06 Score=86.67 Aligned_cols=105 Identities=18% Similarity=0.128 Sum_probs=71.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-----cC--------------ceecCCHHHHhccCCEEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-----SA--------------ARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-----~g--------------~~~~~sL~eLL~~ADVV~ 223 (632)
++|+|||.|.||..+|..+...|++|++||++......... .+ .....++.+++.+||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 57999999999999999999999999999987643221000 00 123457888899999999
Q ss_pred EccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 224 LHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 224 l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
+++|...+...-+-++.-..++++++|+....| +....|.+.+.
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~ 128 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVT 128 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 999986643333323333446777777544444 23456766664
No 95
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.29 E-value=5.8e-06 Score=93.30 Aligned_cols=118 Identities=15% Similarity=0.107 Sum_probs=85.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------ccccC-------------ceecCCHHHHhc
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSA-------------ARRMDTLNDLLA 217 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~sL~eLL~ 217 (632)
=++|||||.|.||..||..+...|++|.+||++....+. ....+ .....++++ ++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 357999999999999999999999999999998654321 01111 223567765 56
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceEEeecCCCC
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP 284 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLI-NvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P 284 (632)
+||+||.++|-..+.+..+-.+.-..++++++|. |++.-.+ ..|.+++.. .....++..|.++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Pa 147 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPA 147 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcc
Confidence 9999999999988888887666667788888877 7766444 456666642 3345677767653
No 96
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.28 E-value=1.6e-06 Score=90.38 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=77.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh--CCCEEE-EECCCCCCCCccc-ccC-ceecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 161 RGLVLGIVGRSASARALATRSLS--FKMSVL-YFDVPEGKGKVTF-PSA-ARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka--fGm~V~-~~dr~~~~~~~~~-~~g-~~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
...+|||||+|.||+.+|+.+.. .+++|. ++|++........ ..+ ...+.++++++.++|+|++|+|.... .-
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h--~e 82 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL--RA 82 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH--HH
Confidence 34789999999999999999985 588876 6787753322111 112 23467899999999999999996332 22
Q ss_pred ccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+ ....++.|.-++..+.|.+.+.++|.++.+++...
T Consensus 83 ~---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 83 I---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred H---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 2 23335667767778889888889999988876543
No 97
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.27 E-value=1.4e-06 Score=91.19 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=71.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc--------------ccCceecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF--------------PSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~--------------~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|+|||+|.||..+|..|...|.+|.+|+++....+... ..+.....++++++..+|+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 3699999999999999999999999999998753221000 01233456788899999999999996
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCCChh
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
..+..++. .....+++++++|++..|--
T Consensus 82 -~~~~~v~~-~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 82 -QALREVLK-QLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred -HHHHHHHH-HHHhhcCCCCEEEEEeeccc
Confidence 56666663 45566789999999976543
No 98
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.23 E-value=3.4e-06 Score=82.31 Aligned_cols=89 Identities=22% Similarity=0.387 Sum_probs=74.8
Q ss_pred cccCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.|.|++|.|||.|.+ |..+|+.|...|++|.+.+++. .++.+.+.+||+||.+.+.. ++|.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~----~ii~ 102 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKP----GLVK 102 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCC----ceec
Confidence 479999999999996 8889999999999999999763 36788999999999999863 3788
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcce
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAG 275 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~G 275 (632)
.+. ++++.++||+|....+| ..+|++.|
T Consensus 103 ~~~---~~~~~viIDla~prdvd-------~~~~~~~G 130 (168)
T cd01080 103 GDM---VKPGAVVIDVGINRVPD-------KSGGKLVG 130 (168)
T ss_pred HHH---ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence 875 57899999999988887 45556554
No 99
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.21 E-value=4.4e-06 Score=88.97 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=75.4
Q ss_pred hHHHHHHHhhCCCEEEEECCCCCCCC-----cccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCc
Q 006758 174 ARALATRSLSFKMSVLYFDVPEGKGK-----VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (632)
Q Consensus 174 G~~vA~~LkafGm~V~~~dr~~~~~~-----~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GA 248 (632)
|..||++|...|.+|++||++..... .....|+...++..+++++||+|++|+|..+.++.++ ...+..+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 89999999999999999998764321 1223466677889999999999999999988888888 56889999999
Q ss_pred EEEEcCCChhhcHHHHHHHHHc
Q 006758 249 FLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 249 vLINvgRG~iVDe~AL~~AL~s 270 (632)
++||++. ++...++..|+.
T Consensus 111 IVID~ST---IsP~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCT---VSPVVLYYSLEK 129 (341)
T ss_pred EEEECCC---CCHHHHHHHHHH
Confidence 9999977 556666666665
No 100
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.19 E-value=4.6e-06 Score=88.21 Aligned_cols=78 Identities=18% Similarity=0.340 Sum_probs=66.3
Q ss_pred cccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEEC-CCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhc
Q 006758 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFD-VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~d-r~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI 236 (632)
++.|++|+||| .|.+|+.||.+|..-|++|.+|+ ++. ++.+++++||+|+++++... ++
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~----~v 215 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPE----MV 215 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChh----hc
Confidence 47999999999 99999999999999999999996 432 57899999999999999744 45
Q ss_pred cHHHHhccCCCcEEEEcCCChh
Q 006758 237 NAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~i 258 (632)
.+.. +|+|+++||+|--.+
T Consensus 216 ~~~~---lk~GavVIDvGin~~ 234 (296)
T PRK14188 216 KGDW---IKPGATVIDVGINRI 234 (296)
T ss_pred chhe---ecCCCEEEEcCCccc
Confidence 5533 899999999987553
No 101
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.17 E-value=4e-06 Score=87.08 Aligned_cols=104 Identities=10% Similarity=0.124 Sum_probs=74.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCC-Ccc-cccCceecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 162 GLVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKG-KVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG----m~V~~~dr~~~~~-~~~-~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
+++|||||+|+||.+||+.|...| .+|.+++|+.... ... ...++....+..+++..||+|++++|. .....+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KDVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HHHHHH
Confidence 468999999999999999999877 6899999865221 111 112444556888899999999999995 344455
Q ss_pred ccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
+ ......++++.+||++.-|- ..+.|.+.+.
T Consensus 82 l-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~ 112 (279)
T PRK07679 82 L-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ 112 (279)
T ss_pred H-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence 4 34555678899999986553 4555665543
No 102
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.14 E-value=5.5e-06 Score=92.48 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=88.9
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCCcccc-----cCceecCCHHHHhcc---CCEEEEccCCChhhHhhccHHHHhcc
Q 006758 173 SARALATRSLSFKMSVLYFDVPEGKGKVTFP-----SAARRMDTLNDLLAA---SDVISLHCAVTDETIQIINAECLQHI 244 (632)
Q Consensus 173 IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-----~g~~~~~sL~eLL~~---ADVV~l~lPlT~~T~~lI~~~~L~~M 244 (632)
||+.||++|...|.+|.+|||+....+.... .++....++.+++.. +|+|++++|..+.+..+| ...+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 7999999999999999999999754432221 135667899998875 899999999999999998 4688999
Q ss_pred CCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 245 KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 245 K~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.+|.++||++....-|...+.+.+.+..+. .+|+
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~--fvda 113 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIH--FIGM 113 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCe--EEec
Confidence 999999999999999999999999988876 6664
No 103
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=8.7e-06 Score=85.66 Aligned_cols=78 Identities=17% Similarity=0.307 Sum_probs=66.1
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|++|+|||. |.+|+.||.+|...|++|.+|.... .++.+.+++||+|+.+++.. +++.
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVI~avg~~----~~v~ 216 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT--------------RNLAEVARKADILVVAIGRG----HFVT 216 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEecCcc----ccCC
Confidence 489999999999 9999999999999999999993221 27899999999999999963 4566
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
... +|+|+++||+|--.
T Consensus 217 ~~~---ik~GavVIDvgin~ 233 (284)
T PRK14179 217 KEF---VKEGAVVIDVGMNR 233 (284)
T ss_pred HHH---ccCCcEEEEeccee
Confidence 544 89999999998654
No 104
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.09 E-value=1.6e-06 Score=81.02 Aligned_cols=98 Identities=15% Similarity=0.248 Sum_probs=71.0
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCC---ccccc---CceecCCHHHHhccCCEEEEccCCChh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGK---VTFPS---AARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~~~~~---~~~~~---g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
.++|+++.|||.|.+|+.++..|...|++ |.+++|+..... ..+.. ....+.++.+.+..+|+|+.+.|....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 58999999999999999999999999996 999999864332 11111 123456777889999999999997443
Q ss_pred hHhhccHHHHhccCCCc-EEEEcCCChhh
Q 006758 232 TIQIINAECLQHIKPGA-FLVNTGSSQLL 259 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GA-vLINvgRG~iV 259 (632)
+|.++.+...++.. ++++.+.-.-|
T Consensus 89 ---~i~~~~~~~~~~~~~~v~Dla~Pr~i 114 (135)
T PF01488_consen 89 ---IITEEMLKKASKKLRLVIDLAVPRDI 114 (135)
T ss_dssp ---SSTHHHHTTTCHHCSEEEES-SS-SB
T ss_pred ---ccCHHHHHHHHhhhhceeccccCCCC
Confidence 77888877665443 77777654333
No 105
>PRK07680 late competence protein ComER; Validated
Probab=98.07 E-value=6.3e-06 Score=85.29 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=73.6
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC----EEEEECCCCCCCCcccc--cCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 164 VLGIVGRSASARALATRSLSFKM----SVLYFDVPEGKGKVTFP--SAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm----~V~~~dr~~~~~~~~~~--~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
+|||||+|.||..+|+.|...|. +|.+|+|+......... .+.....+..+++..+|+|++++|- .....++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl- 79 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL- 79 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH-
Confidence 69999999999999999988773 79999998643221111 1344456788889999999999983 3455555
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
.+....++++.++|.++-| +..+.|.+.+.
T Consensus 80 ~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3445567888999999865 35666666554
No 106
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=1.3e-05 Score=84.53 Aligned_cols=78 Identities=19% Similarity=0.311 Sum_probs=68.0
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.+.|+++.|||.|. +|+.+|.+|...|++|.+++++. .+|.+.+.+||+|+.+++. .++|.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~----p~~i~ 216 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGK----PGLVT 216 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCC----CcccC
Confidence 48999999999999 99999999999999999998642 3688999999999999986 45788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
++. +|+|+++||+|--.
T Consensus 217 ~~~---vk~gavVIDvGi~~ 233 (286)
T PRK14175 217 KDV---VKEGAVIIDVGNTP 233 (286)
T ss_pred HHH---cCCCcEEEEcCCCc
Confidence 764 68999999999754
No 107
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.05 E-value=6.5e-06 Score=84.40 Aligned_cols=101 Identities=17% Similarity=0.204 Sum_probs=72.2
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC---EEEEECCCCCCCCcccc-c-CceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 164 VLGIVGRSASARALATRSLSFKM---SVLYFDVPEGKGKVTFP-S-AARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm---~V~~~dr~~~~~~~~~~-~-g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
+|||||+|+||+.+++.|...|. .|.+++++......... . +.....+..+++.++|+|++++| ......++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 69999999999999999987774 35788887543221111 1 23445688899999999999999 3455555532
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
+ .+++|.++|.+.- -+..+.|.+.+..
T Consensus 81 --l-~~~~~~~vis~~a--g~~~~~l~~~~~~ 107 (258)
T PRK06476 81 --L-RFRPGQTVISVIA--ATDRAALLEWIGH 107 (258)
T ss_pred --h-ccCCCCEEEEECC--CCCHHHHHHHhCC
Confidence 3 3578999999873 3666777777654
No 108
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.04 E-value=4.3e-06 Score=83.86 Aligned_cols=134 Identities=13% Similarity=0.142 Sum_probs=92.7
Q ss_pred ChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHH--hhCCCEEEE-
Q 006758 114 RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS--LSFKMSVLY- 190 (632)
Q Consensus 114 na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L--kafGm~V~~- 190 (632)
.+...++|.+..++...|++. .|. ...+|+|||+|.+|+.+++.+ ...|++|++
T Consensus 59 ~G~~~~gy~v~~l~~~~~~~l----------~~~-------------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv 115 (213)
T PRK05472 59 FGKRGVGYNVEELLEFIEKIL----------GLD-------------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAA 115 (213)
T ss_pred cCCCCCCeeHHHHHHHHHHHh----------CCC-------------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEE
Confidence 335556788888887776643 121 245799999999999999863 357898776
Q ss_pred ECCCCCCCCcccc-cCceecCCHHHHhcc--CCEEEEccCCChh---hHhhccHHHHhccCCCcEEEEcCCChhhcHHHH
Q 006758 191 FDVPEGKGKVTFP-SAARRMDTLNDLLAA--SDVISLHCAVTDE---TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAV 264 (632)
Q Consensus 191 ~dr~~~~~~~~~~-~g~~~~~sL~eLL~~--ADVV~l~lPlT~~---T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL 264 (632)
+|+++........ ..+..+.++.+++.. .|+|++++|.+.. +..+.......-|...++.+|+.+|.+|+..+|
T Consensus 116 ~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l 195 (213)
T PRK05472 116 FDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDL 195 (213)
T ss_pred EECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEech
Confidence 5665422211111 112234578888865 9999999998775 333444444566677889999999999999999
Q ss_pred HHHHHc
Q 006758 265 KQLLID 270 (632)
Q Consensus 265 ~~AL~s 270 (632)
..+|..
T Consensus 196 ~~~l~~ 201 (213)
T PRK05472 196 TVELQT 201 (213)
T ss_pred HHHHHH
Confidence 999873
No 109
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.03 E-value=1.8e-05 Score=86.70 Aligned_cols=105 Identities=11% Similarity=0.064 Sum_probs=73.3
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc----------------cCcee--cCCHHHHhccCCEEEEc
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP----------------SAARR--MDTLNDLLAASDVISLH 225 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~----------------~g~~~--~~sL~eLL~~ADVV~l~ 225 (632)
+|+|||+|.||..+|..+. .|++|++||++....+.... ..... ..+..+++..||+|++|
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~ 80 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA 80 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence 6999999999999997666 59999999998643221000 11112 22366788999999999
Q ss_pred cCCCh----------hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 006758 226 CAVTD----------ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (632)
Q Consensus 226 lPlT~----------~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg 271 (632)
+|..- ..+..+ +.... +++|.++|+.+.-.+=-.+.+.+.+.+.
T Consensus 81 Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~ 134 (388)
T PRK15057 81 TPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTE 134 (388)
T ss_pred CCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcC
Confidence 99651 122222 23344 7999999999998877777777776653
No 110
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.02 E-value=6.7e-05 Score=84.75 Aligned_cols=180 Identities=12% Similarity=0.125 Sum_probs=106.2
Q ss_pred cceEEEEecCCCCCHHHHhcCCCceEEEEe-cccCCccchHHHHhcCcEEEEcCCCC----------hHHHHHHHHHHH-
Q 006758 59 AAAAVLLHSLAYLPRAAQRRLRPYQLILCL-GSSDRTVDSALAADLGLRLIHVDTSR----------AEEIADTVMALL- 126 (632)
Q Consensus 59 dAdaIli~s~~~L~~evL~~lp~LK~I~~~-gaG~D~VD~~aa~erGI~VtNvpg~n----------a~aVAE~ALali- 126 (632)
++|+|+--. +.+.+.++.++.=+.+.+. .-..+.=-++++.++||.+..-.... -.++|+.+=...
T Consensus 64 ~adiIlkV~--~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Av 141 (511)
T TIGR00561 64 QSDIILKVN--APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAI 141 (511)
T ss_pred cCCEEEEeC--CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHH
Confidence 467766332 2345567777664444443 33333223466788899888743111 123333331111
Q ss_pred HHHHhhcHHHHHHHHHhcCCC-CCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccC
Q 006758 127 LGLLRRTHLLARHALSASGWL-GSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA 205 (632)
Q Consensus 127 Lal~Rrl~~~~~~~~~~g~W~-~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g 205 (632)
+..+..+ +++. +...+. ..+.+.++.|+|.|.+|...+..++.+|+.|.++|++....+.....+
T Consensus 142 i~Aa~~l----------gr~~~g~~taa----g~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lG 207 (511)
T TIGR00561 142 IEAAHEF----------GRFFTGQITAA----GKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMG 207 (511)
T ss_pred HHHHHHh----------hhhcCCceecC----CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC
Confidence 1111111 1111 111111 135678999999999999999999999999999998764332111111
Q ss_pred cee--cC---------------C----------HHHHhccCCEEEEcc--CCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 206 ARR--MD---------------T----------LNDLLAASDVISLHC--AVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 206 ~~~--~~---------------s----------L~eLL~~ADVV~l~l--PlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
... ++ + +.+.++.+|+|+.++ |..+ ...+|.++.++.||+|+++||++-
T Consensus 208 a~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 208 AEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred CeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 111 00 1 456678899999988 3322 235889999999999999999975
No 111
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.94 E-value=1.7e-05 Score=75.90 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=65.8
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC--------------cccccCceecCCHHHHhccCCEEEEccCCC
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK--------------VTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~--------------~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
+|+|||.|+.|.++|..|...|.+|..|.++....+ ...+.......+++++++.+|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 589999999999999999999999999999842111 112223344678999999999999999963
Q ss_pred hhhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 230 DETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
. .+.++ +.....++++..+|++.-|=
T Consensus 81 ~-~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 A-HREVL-EQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp G-HHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred H-HHHHH-HHHhhccCCCCEEEEecCCc
Confidence 3 34444 45666678899999998764
No 112
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.93 E-value=9.6e-06 Score=75.88 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=55.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCCCCCCc-ccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPEGKGKV-TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~-dr~~~~~~~-~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
...+|||||.|++|..+++.|...|..|.++ +|+....+. ....+...+.++++++..+|+|++++|... ...+ -+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda-I~~v-a~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA-IAEV-AE 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH-HHHH-HH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH-HHHH-HH
Confidence 5578999999999999999999999998876 455422211 111223345688999999999999999753 2233 23
Q ss_pred HHHhc--cCCCcEEEEcC
Q 006758 239 ECLQH--IKPGAFLVNTG 254 (632)
Q Consensus 239 ~~L~~--MK~GAvLINvg 254 (632)
+.-.. .++|.++|-|+
T Consensus 87 ~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHCC--S-TT-EEEES-
T ss_pred HHHHhccCCCCcEEEECC
Confidence 33333 68999999985
No 113
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.88 E-value=5.7e-05 Score=73.37 Aligned_cols=79 Identities=24% Similarity=0.367 Sum_probs=59.6
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.||++.|||.+. +|+.+|.+|...|+.|..++.+. .++.+.+.+||+|+.+++- .++|.
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~----~~~i~ 94 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGK----PNLIK 94 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSS----TT-B-
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeecc----ccccc
Confidence 48999999999995 99999999999999999987653 3788999999999999975 56787
Q ss_pred HHHHhccCCCcEEEEcCCChh
Q 006758 238 AECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i 258 (632)
.+ .+|+|+++||+|.-.+
T Consensus 95 ~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 95 AD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp GG---GS-TTEEEEE--CEEE
T ss_pred cc---cccCCcEEEecCCccc
Confidence 64 5789999999998665
No 114
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.87 E-value=6e-05 Score=65.08 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=56.5
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhC-CCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSF-KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
+.+++++|+|.|.+|+.++..+..+ +.+|.++|+ |+|+.+.+- .+++.+
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~----~~~~~~ 70 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPA----GVPVLE 70 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCC----CCCchH
Confidence 6899999999999999999999998 678999988 999999875 355666
Q ss_pred HHHhccCCCcEEEEcC
Q 006758 239 ECLQHIKPGAFLVNTG 254 (632)
Q Consensus 239 ~~L~~MK~GAvLINvg 254 (632)
+.+..|++++++++++
T Consensus 71 ~~~~~~~~~~~v~~~a 86 (86)
T cd05191 71 EATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHhcCCCCEEEecC
Confidence 6788899999999874
No 115
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.87 E-value=9.7e-06 Score=78.37 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=68.2
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---cccccC-----------------------ceecCC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---VTFPSA-----------------------ARRMDT 211 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~---~~~~~g-----------------------~~~~~s 211 (632)
..+...+|.|+|.|+.|+..++.++++|++|..+|....... ...... ..+...
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 457788999999999999999999999999999998653211 000000 111235
Q ss_pred HHHHhccCCEEEEcc-CCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 212 LNDLLAASDVISLHC-AVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 212 L~eLL~~ADVV~l~l-PlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
|.+.++.+|+|++++ -..+..-.+|..+.++.||+|.+||+++
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 788899999998644 3455677899999999999999999985
No 116
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.87 E-value=5.7e-05 Score=74.18 Aligned_cols=115 Identities=15% Similarity=0.065 Sum_probs=76.4
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------c-----------------ccccCceecCCHHHHhccC
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------V-----------------TFPSAARRMDTLNDLLAAS 219 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-------~-----------------~~~~g~~~~~sL~eLL~~A 219 (632)
+|+|||.|.||..+|..+...|++|..||++..... . ..........+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999999864321 0 0001223457889888 99
Q ss_pred CEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 220 DVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
|+|+=++|-.-+.+.-+-++.-+.++++++|...+++ +....|..++. ..-...++=.|.
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~-~p~R~ig~Hf~~ 139 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS-RPERFIGMHFFN 139 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS-TGGGEEEEEE-S
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC-cCceEEEEeccc
Confidence 9999999988888777777777888999998776554 34455655553 233334444443
No 117
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.86 E-value=6.2e-05 Score=79.35 Aligned_cols=78 Identities=22% Similarity=0.300 Sum_probs=66.6
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.|. +|+.+|.+|...|++|.++.... .+|.+.+.+||+|+.+++- .++|.
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvi~avG~----p~~v~ 217 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHVRNADLLVVAVGK----PGFIP 217 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHHhhCCEEEEcCCC----ccccc
Confidence 48999999999999 99999999999999999997542 3789999999999999953 24677
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
. ..+|+|+++||+|--.
T Consensus 218 ~---~~vk~gavVIDvGin~ 234 (285)
T PRK10792 218 G---EWIKPGAIVIDVGINR 234 (285)
T ss_pred H---HHcCCCcEEEEccccc
Confidence 6 5578999999999544
No 118
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.86 E-value=4e-05 Score=79.91 Aligned_cols=102 Identities=11% Similarity=0.221 Sum_probs=71.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCCCccc-c-c-CceecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 163 LVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKGKVTF-P-S-AARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG----m~V~~~dr~~~~~~~~~-~-~-g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
.+|+|||+|+||..+|+.|...| .+|.+|+++........ . . +.....+..+++..+|+|++|+|. .....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence 36999999999999999998877 68999988642211000 1 1 222346788889999999999993 334444
Q ss_pred ccHHHHhccCCCcEEEEcCCChhhcHHHHHHHH
Q 006758 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL 268 (632)
+ .+....++++.+||.+.-| +..+.|.+.+
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~ 110 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEIT 110 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHc
Confidence 4 3333456788899998877 4555676655
No 119
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.82 E-value=3.2e-05 Score=79.29 Aligned_cols=101 Identities=15% Similarity=0.165 Sum_probs=68.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC---CEEEEECCCCCCCCcccc-cCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLSFK---MSVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG---m~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
++|+|||+|.||..+|..+...| .+|.+++|+....+.... .+.....+..+++..+|+|++++|- .....++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~~- 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVLS- 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHHH-
Confidence 47999999999999999999888 789999998643221111 1334456788889999999999984 23444432
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
.....+ +.++|.+.-|- ..+.|.+.+.
T Consensus 81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 81 ELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 222223 46788886654 4455665553
No 120
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.81 E-value=5.6e-05 Score=76.30 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=65.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---cccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT---FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~---~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
++++|+|.|+||..+|+++...|.+|.+-+++....... +-.......+..+..+.+|||++++|+..- .++ .++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~-~~v-~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAI-PDV-LAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHH-HhH-HHH
Confidence 579999999999999999999999999997665432200 001112335788899999999999998443 233 245
Q ss_pred HHhccCCCcEEEEcCCC
Q 006758 240 CLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG 256 (632)
....+. |.++|++.-.
T Consensus 80 l~~~~~-~KIvID~tnp 95 (211)
T COG2085 80 LRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHhC-CeEEEecCCC
Confidence 555565 8899998763
No 121
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.81 E-value=9.7e-05 Score=78.96 Aligned_cols=140 Identities=17% Similarity=0.181 Sum_probs=102.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhcc-CCEEEEccCCChhhHhhccHH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA-SDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~-ADVV~l~lPlT~~T~~lI~~~ 239 (632)
.-.+|||||+|++|+-+|..+...|..|..+||..-. ..+...|...++.+++++++ +|+|++|+-. ..+..++-.-
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdys-saa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilaty 128 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYS-SAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATY 128 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhH-HHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhc
Confidence 4567999999999999999999999999999998632 22333456667888888765 8999999864 2344555444
Q ss_pred HHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC--CCCCCCccccCCCcEEEcCCCCC
Q 006758 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE--GPQWMEAWVREMPNVLILPRSAD 305 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE--~P~~~~~pL~~~pNVIiTPHiAg 305 (632)
-++++|.|++++++-+.+...-+++.+-|-+.-- .|-+.. .|...++.+..+|=|++-=.++.
T Consensus 129 pfqrlrrgtlfvdvlSvKefek~lfekYLPkdfD---IlctHpmfGPksvnh~wqglpfVydkvRig~ 193 (480)
T KOG2380|consen 129 PFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFD---ILCTHPMFGPKSVNHEWQGLPFVYDKVRIGY 193 (480)
T ss_pred CchhhccceeEeeeeecchhHHHHHHHhCccccc---eEeecCCcCCCcCCCccccCceEEEEeeccc
Confidence 5678999999999999998888888888765321 222222 25545666667888887766553
No 122
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.80 E-value=2.1e-05 Score=86.71 Aligned_cols=100 Identities=14% Similarity=0.209 Sum_probs=71.4
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCC---cccccCceecCCHHHHhccCCEEEEccCCChhhHh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGK---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~~~~---~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
.+.|++|+|||.|.||..+++.|+.+| .+|++++++..... ..+........++.+++..+|+|+.+++. +..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence 478999999999999999999999999 68999999864322 11111122335677889999999999664 446
Q ss_pred hccHHHHhccCC----CcEEEEcCCChhhcH
Q 006758 235 IINAECLQHIKP----GAFLVNTGSSQLLDD 261 (632)
Q Consensus 235 lI~~~~L~~MK~----GAvLINvgRG~iVDe 261 (632)
+|+.+.+..+.+ ..++|+.+...=||.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence 788887776522 347777765433443
No 123
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.79 E-value=6e-05 Score=79.23 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=68.1
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|++|.|||.+ ..|+.+|.++..+|++|..+..+. .+|.+.+.+||+|+.+++.. ++|.
T Consensus 149 ~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~----~lv~ 210 (279)
T PRK14178 149 SIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKA----GFIT 210 (279)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcc----cccC
Confidence 4899999999999 999999999999999999987542 37899999999999999742 6788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
++.+ |+|+++||+|-..
T Consensus 211 ~~~v---k~GavVIDVgi~~ 227 (279)
T PRK14178 211 PDMV---KPGATVIDVGINQ 227 (279)
T ss_pred HHHc---CCCcEEEEeeccc
Confidence 8774 9999999999654
No 124
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.77 E-value=8.2e-05 Score=78.46 Aligned_cols=77 Identities=25% Similarity=0.346 Sum_probs=66.4
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.|. +|+.+|.+|...|++|.+++... .+|.+...+||+|+.++.- .++|.
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~----p~~i~ 222 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGV----KHLIK 222 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCC----ccccC
Confidence 48999999999999 99999999999999999998532 3688999999999998765 35787
Q ss_pred HHHHhccCCCcEEEEcCCC
Q 006758 238 AECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG 256 (632)
.+ .+|+|+++||+|--
T Consensus 223 ~~---~vk~gavVIDvGin 238 (287)
T PRK14176 223 AD---MVKEGAVIFDVGIT 238 (287)
T ss_pred HH---HcCCCcEEEEeccc
Confidence 75 57899999999964
No 125
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.74 E-value=9.7e-05 Score=77.83 Aligned_cols=78 Identities=26% Similarity=0.341 Sum_probs=65.8
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.+.|+++.|||.|. +|+++|..|...|++|.++++.. .+|.+.+.+||+|+.+++. + ++|.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~-~---~~v~ 217 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGK-P---ELIK 217 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCC-C---CcCC
Confidence 47999999999998 99999999999999999998721 3678888999999999972 3 3677
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||++-..
T Consensus 218 ~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 218 KDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred HHH---cCCCCEEEEEEEee
Confidence 654 78999999998654
No 126
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.74 E-value=8.1e-05 Score=78.47 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=66.9
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|++|.|||.| .+|+.+|.+|...|++|.++.... .+|.+.+.+||+|+.+++- .++|.
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~----p~~i~ 215 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGK----PDLIK 215 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCC----CCcCC
Confidence 4799999999999 999999999999999999985432 3578999999999999974 56788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+.+ |+|+++||+|-..
T Consensus 216 ~~~v---k~GavVIDvGi~~ 232 (285)
T PRK14191 216 ASMV---KKGAVVVDIGINR 232 (285)
T ss_pred HHHc---CCCcEEEEeeccc
Confidence 7665 8999999999655
No 127
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.71 E-value=6.3e-05 Score=77.73 Aligned_cols=126 Identities=20% Similarity=0.213 Sum_probs=78.6
Q ss_pred HHHHHhhCC--CEEEEECCCCCCCCcccccCcee-cCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEc
Q 006758 177 LATRSLSFK--MSVLYFDVPEGKGKVTFPSAARR-MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 177 vA~~LkafG--m~V~~~dr~~~~~~~~~~~g~~~-~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
+|+.|+..| .+|++||++..........|+.. ..+-.+.+.++|+|++|+|.. .+..++ .+....+++|++++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence 467777666 89999999875444332334332 122257889999999999973 355555 4566679999999999
Q ss_pred CCChhhcHHHHHHHHH--cCCcceEEeecCCC--CCCCCccccCCCcEEEcCCCC
Q 006758 254 GSSQLLDDCAVKQLLI--DGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSA 304 (632)
Q Consensus 254 gRG~iVDe~AL~~AL~--sg~I~GAaLDVfE~--P~~~~~pL~~~pNVIiTPHiA 304 (632)
++-+.--.+++.+.+. ...+.+..+=..|. +......|++--++++||+-.
T Consensus 79 ~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp -S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred CCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 9977655566666655 23355555544443 444556788888999999855
No 128
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.71 E-value=0.00022 Score=71.42 Aligned_cols=91 Identities=23% Similarity=0.186 Sum_probs=66.7
Q ss_pred ccccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCc-ccccCceec--CC----HHHHhccCCEEEEccCCC
Q 006758 158 RRCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKV-TFPSAARRM--DT----LNDLLAASDVISLHCAVT 229 (632)
Q Consensus 158 ~~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~-~~~~g~~~~--~s----L~eLL~~ADVV~l~lPlT 229 (632)
.++.||++.|||.+. +|+.+|.+|..-|++|..+|.+...... ......... .+ +.+.+.+||||+.+++-
T Consensus 58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~- 136 (197)
T cd01079 58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS- 136 (197)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCC-
Confidence 468999999999987 5999999999999999999754311100 000000000 12 78999999999999985
Q ss_pred hhhHhh-ccHHHHhccCCCcEEEEcCC
Q 006758 230 DETIQI-INAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 230 ~~T~~l-I~~~~L~~MK~GAvLINvgR 255 (632)
.++ |..+. +|+|+++||+|-
T Consensus 137 ---~~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 137 ---PNYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred ---CCCccCHHH---cCCCcEEEEcCC
Confidence 456 77755 679999999994
No 129
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.71 E-value=4.7e-05 Score=75.24 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=77.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC------ccc-c-------------cCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK------VTF-P-------------SAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~------~~~-~-------------~g~~~~~sL~eLL~~ADVV 222 (632)
++|+|||+|.+|..+|..+...|++|++||.+..... ..+ + .......+..+.+.+||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 5799999999999999999999999999998753111 000 0 1123345778889999999
Q ss_pred EEccCCChhhHh------hc--cHHHHhccCCCcEEEEcCCChhhcHHH-HHHHHHcCCcceEEeecCCCCC-----CCC
Q 006758 223 SLHCAVTDETIQ------II--NAECLQHIKPGAFLVNTGSSQLLDDCA-VKQLLIDGTLAGCALDGAEGPQ-----WME 288 (632)
Q Consensus 223 ~l~lPlT~~T~~------lI--~~~~L~~MK~GAvLINvgRG~iVDe~A-L~~AL~sg~I~GAaLDVfE~P~-----~~~ 288 (632)
++|+|....-.+ +. -......++++.++|.-+.-.+=-.+. +...|++....+.-+++...|- ..-
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 999985433222 21 235667789999999999877655553 3444443332222233322221 112
Q ss_pred ccccCCCcEE
Q 006758 289 AWVREMPNVL 298 (632)
Q Consensus 289 ~pL~~~pNVI 298 (632)
..+...|.||
T Consensus 161 ~d~~~~~rvV 170 (185)
T PF03721_consen 161 EDFRNPPRVV 170 (185)
T ss_dssp HHHHSSSEEE
T ss_pred hhccCCCEEE
Confidence 3566667776
No 130
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.70 E-value=7.1e-05 Score=79.30 Aligned_cols=129 Identities=12% Similarity=0.193 Sum_probs=90.4
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---cccccCce----ecCCHHHHhccCCEEEEccCCCh
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---VTFPSAAR----RMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~---~~~~~g~~----~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
..+...+|.|||.|-+|..-|+++.++|.+|.+.|.+..... ..+...+. ....+++.+..+|+||.++=...
T Consensus 164 pGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 164 PGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred CCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC
Confidence 346777899999999999999999999999999998854332 22222211 13457899999999998764322
Q ss_pred -hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC--CCCCCCccccCCCcEE--EcCCCCC
Q 006758 231 -ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE--GPQWMEAWVREMPNVL--ILPRSAD 305 (632)
Q Consensus 231 -~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE--~P~~~~~pL~~~pNVI--iTPHiAg 305 (632)
..-.++.++.++.||||++||+++ ++.|.+ || +|...+.|.+....|+ +-|.+-|
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA-------------iDqGGc-------~Et~~~TTh~~PtY~~~gvvhY~VaNmPg 303 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA-------------IDQGGC-------FETSHPTTHDDPTYEVDGVVHYGVANMPG 303 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE-------------EcCCCc-------eeccccccCCCCceeecCEEEEecCCCCc
Confidence 355678899999999999999984 344443 33 2555556666666654 5555444
Q ss_pred c
Q 006758 306 Y 306 (632)
Q Consensus 306 ~ 306 (632)
.
T Consensus 304 a 304 (371)
T COG0686 304 A 304 (371)
T ss_pred c
Confidence 3
No 131
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.69 E-value=0.00024 Score=67.55 Aligned_cols=78 Identities=24% Similarity=0.285 Sum_probs=66.9
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|++|.|+|-+. +|+.+|.+|...|++|..++.+. .++++.+++||+|+.+++.. ++|+
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~----~~i~ 86 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKP----EKVP 86 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCC----CccC
Confidence 58999999999875 69999999999999999998643 27888999999999999864 5688
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|||+++|+++...
T Consensus 87 ~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 87 TEW---IKPGATVINCSPTK 103 (140)
T ss_pred HHH---cCCCCEEEEcCCCc
Confidence 755 78999999998755
No 132
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.67 E-value=0.00029 Score=79.76 Aligned_cols=183 Identities=15% Similarity=0.147 Sum_probs=104.7
Q ss_pred cceEEEEecCCCCCHHHHhcCCCceEEEE-ecccCCccchHHHHhcCcEEEEcCCCC----h------HHHHHHHHHHHH
Q 006758 59 AAAAVLLHSLAYLPRAAQRRLRPYQLILC-LGSSDRTVDSALAADLGLRLIHVDTSR----A------EEIADTVMALLL 127 (632)
Q Consensus 59 dAdaIli~s~~~L~~evL~~lp~LK~I~~-~gaG~D~VD~~aa~erGI~VtNvpg~n----a------~aVAE~ALaliL 127 (632)
++|+|+.-. ..+.+.++.++.=+.+.+ .....+.=-++++.++||.+..-.... + .++|+.+=
T Consensus 65 ~~diilkV~--~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG---- 138 (509)
T PRK09424 65 QSDIILKVN--APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG---- 138 (509)
T ss_pred cCCEEEEeC--CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH----
Confidence 577777432 234556777766554443 333333333566788899888732211 0 22333221
Q ss_pred HHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce
Q 006758 128 GLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR 207 (632)
Q Consensus 128 al~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~ 207 (632)
.|-+....+. -+...... -... ....+.+|.|+|.|.||...+..++.+|++|+++|++....+.....|+.
T Consensus 139 --y~Av~~aa~~---~~~~~~g~-~taa--G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 139 --YRAVIEAAHE---FGRFFTGQ-ITAA--GKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred --HHHHHHHHHH---hcccCCCc-eecc--CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 1111111111 11111100 0001 13569999999999999999999999999999999886443322122222
Q ss_pred e--cC-----------------C--------HHHHhccCCEEEEccCCChh-hHhhccHHHHhccCCCcEEEEcCC
Q 006758 208 R--MD-----------------T--------LNDLLAASDVISLHCAVTDE-TIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 208 ~--~~-----------------s--------L~eLL~~ADVV~l~lPlT~~-T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
. .+ + +.+.+..+|+||.+...... ...+|.++.++.||+|.++|++|=
T Consensus 211 ~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 211 FLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred EEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 1 10 1 11223579999999865321 234567889999999999999964
No 133
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.67 E-value=8.6e-05 Score=77.10 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=68.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCE-EEEECCCCCCCCcc-cccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLSF--KMS-VLYFDVPEGKGKVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--Gm~-V~~~dr~~~~~~~~-~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.+|||||+|.||+.+++.+... +++ +.++|++....... ...+...+.++++++.++|+|++|.|...- . +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~-~----~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAV-E----E 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHH-H----H
Confidence 3799999999999999998865 576 45678875332211 012334567899999999999999874221 1 1
Q ss_pred HHHhccCCCcEEEEcCCChhhcH---HHHHHHHHcCC
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDD---CAVKQLLIDGT 272 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe---~AL~~AL~sg~ 272 (632)
-....|+.|.-+|..+-|.+.|. +.|.++.+++.
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence 22233455666666777777664 35666666544
No 134
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.66 E-value=7.7e-05 Score=79.15 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=62.8
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCC---cccccCceecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGK---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~~~~---~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
+.|++|+|||.|.||+.+++.|+..| .+|.+++|+..... ..+.......+++.+.+..+|+|+.++|...- ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 68999999999999999999999876 58999999864321 11111122234567888899999999996433 222
Q ss_pred ccHHHHhcc-CCCcEEEEcCC
Q 006758 236 INAECLQHI-KPGAFLVNTGS 255 (632)
Q Consensus 236 I~~~~L~~M-K~GAvLINvgR 255 (632)
+ +..+... +++.++||++.
T Consensus 255 ~-~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCC
Confidence 2 2233222 24667776664
No 135
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.64 E-value=0.00017 Score=74.75 Aligned_cols=108 Identities=8% Similarity=0.023 Sum_probs=71.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-----------eecCCHHHHhccCCEEEEccCCChh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-----------RRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-----------~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
++|+|||.|.||..+|..|...|.+|.+++++....+.....+. ....++.++ ..+|+|++++|.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 36999999999999999999999999999985432210000111 113445555 8999999999953 4
Q ss_pred hHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+..++ +.....+.+++.+|...-| +-.++.+.+.+....+.
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~ 119 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL 119 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence 45554 2344556778888888776 32345566656554544
No 136
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.61 E-value=0.0001 Score=74.15 Aligned_cols=92 Identities=10% Similarity=0.133 Sum_probs=62.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--------cCc---eecCCHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--------SAA---RRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~--------~g~---~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
++|+||| .|+||..+|..|...|.+|.+++++......... .+. ....+..+.+..+|+|++++|...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 3699997 9999999999999999999999987633211000 011 122366788999999999999633
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
...++ ++.-..++ +.++|++.-|-
T Consensus 81 -~~~~l-~~l~~~l~-~~vvI~~~ngi 104 (219)
T TIGR01915 81 -VLKTL-ESLRDELS-GKLVISPVVPL 104 (219)
T ss_pred -HHHHH-HHHHHhcc-CCEEEEeccCc
Confidence 33333 22223343 58999997764
No 137
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.60 E-value=0.00015 Score=78.30 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=73.5
Q ss_pred hHHHHHHHhhCCCEEEEECCCCCCC-----CcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCc
Q 006758 174 ARALATRSLSFKMSVLYFDVPEGKG-----KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (632)
Q Consensus 174 G~~vA~~LkafGm~V~~~dr~~~~~-----~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GA 248 (632)
|..+|.+|...|.+|++||++.... ......++....+..+++.+||+|++++|....++.++ ......+++|+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 7999999999999999999876421 11122355556688899999999999999765577877 46778899999
Q ss_pred EEEEcCCChhhcH-HHHHHHHH
Q 006758 249 FLVNTGSSQLLDD-CAVKQLLI 269 (632)
Q Consensus 249 vLINvgRG~iVDe-~AL~~AL~ 269 (632)
++||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999887665 55666664
No 138
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.58 E-value=0.0002 Score=72.29 Aligned_cols=105 Identities=11% Similarity=0.124 Sum_probs=67.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCC---CE-EEEECCC-CCCCCc-ccccCceecCCHHHHhccCCEEEEccCCChhhHh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFK---MS-VLYFDVP-EGKGKV-TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG---m~-V~~~dr~-~~~~~~-~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
.+.+|||||.|.||..+|..+...| .+ |++++++ ...... ....++....++++++.++|+|++++|.. ..+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence 3578999999999999999987665 33 7777764 222211 11123444568889999999999999953 3333
Q ss_pred hccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
++ .+.-..++ +.+||.+.=| +..+.|.+.+..
T Consensus 82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~ 113 (245)
T PRK07634 82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPK 113 (245)
T ss_pred HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCC
Confidence 33 22222334 6788998766 344456665543
No 139
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.57 E-value=8.6e-05 Score=82.02 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=65.7
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---cccccCceecCCHHHHhccCCEEEEccCCChhhHh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
.+.|++|+|||.|.||..+++.|...|+ +|++++++..... ..+........++.+.+..+|+|+.++|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 3789999999999999999999999998 8999999864322 111111222345667788999999997743 34
Q ss_pred hccHHHHhcc-----CCCcEEEEcCC
Q 006758 235 IINAECLQHI-----KPGAFLVNTGS 255 (632)
Q Consensus 235 lI~~~~L~~M-----K~GAvLINvgR 255 (632)
+|..+.+..+ ..+.++|+++-
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 5666666554 23456666653
No 140
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.57 E-value=0.00016 Score=76.66 Aligned_cols=107 Identities=15% Similarity=0.133 Sum_probs=73.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccC-----------------ceecCCHHHHhccCCEEEEc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA-----------------ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g-----------------~~~~~sL~eLL~~ADVV~l~ 225 (632)
++|+|||.|.||..+|..|...|.+|.+|++...... ....+ .....++ +.+..+|+|+++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDE-LRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHH-HHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 4699999999999999999999999999998642110 00001 0112344 567899999999
Q ss_pred cCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+|.. ++..++ ......+++++++|.+.-| +...+.+.+.+...++.
T Consensus 81 vk~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~ 126 (341)
T PRK08229 81 VKSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL 126 (341)
T ss_pred ecCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence 9864 445555 3456667899999988654 33445666666554443
No 141
>PLN00203 glutamyl-tRNA reductase
Probab=97.53 E-value=8.1e-05 Score=84.42 Aligned_cols=84 Identities=14% Similarity=0.215 Sum_probs=63.6
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcc---ccc-C--ceecCCHHHHhccCCEEEEccCCChhh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVT---FPS-A--ARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~---~~~-g--~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
+.+++|+|||.|.||+.+++.|...|+ +|++++|+....... +.. . ...++++.+++..+|+|+++.|. +
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s---~ 340 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS---E 340 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC---C
Confidence 779999999999999999999999997 799999986443211 110 0 11235677889999999998764 4
Q ss_pred HhhccHHHHhccCC
Q 006758 233 IQIINAECLQHIKP 246 (632)
Q Consensus 233 ~~lI~~~~L~~MK~ 246 (632)
..+|..+.+..|++
T Consensus 341 ~pvI~~e~l~~~~~ 354 (519)
T PLN00203 341 TPLFLKEHVEALPP 354 (519)
T ss_pred CCeeCHHHHHHhhh
Confidence 56788888887753
No 142
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.53 E-value=0.00025 Score=73.69 Aligned_cols=108 Identities=10% Similarity=0.102 Sum_probs=72.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccC-------------ceecCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA-------------ARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g-------------~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
++|+|||.|.||..+|..|...|.+|.+|++ ....+.....+ .....++.++...+|+|++++|..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 3699999999999999999999999999998 32111000000 011345666778999999999953
Q ss_pred hhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 230 DETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
++..++ ......+++++++|.+.-| +-..+.+.+.+...++.
T Consensus 80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 344444 3344456778888877665 33456677776555544
No 143
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.53 E-value=0.00036 Score=73.62 Aligned_cols=79 Identities=23% Similarity=0.391 Sum_probs=67.3
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|..-|++|.+++... .+|.+.+.+||+|+.+++- .++|+
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t--------------~~l~~~~~~ADIvI~AvG~----p~~i~ 216 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT--------------KNLAELTKQADILIVAVGK----PKLIT 216 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCC----CCcCC
Confidence 48999999999986 69999999999999999986432 3788999999999999974 45899
Q ss_pred HHHHhccCCCcEEEEcCCChh
Q 006758 238 AECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i 258 (632)
.+.+ |+|+++||+|.-.+
T Consensus 217 ~~~i---k~gavVIDvGi~~~ 234 (284)
T PRK14190 217 ADMV---KEGAVVIDVGVNRL 234 (284)
T ss_pred HHHc---CCCCEEEEeecccc
Confidence 8775 89999999997653
No 144
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.53 E-value=0.00046 Score=72.78 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=66.7
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|...|++|.++.... .+|.+.+.+||||+.+++- .++|.
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~----~~~i~ 215 (284)
T PRK14170 154 QIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGL----AKFVK 215 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCccC
Confidence 58999999999986 69999999999999999986532 3688999999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 216 ~~~---vk~GavVIDvGin~ 232 (284)
T PRK14170 216 KDY---IKPGAIVIDVGMDR 232 (284)
T ss_pred HHH---cCCCCEEEEccCcc
Confidence 755 67999999999765
No 145
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.53 E-value=0.00044 Score=73.07 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=66.2
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.||++.|||.+. +|+.+|.+|..-|++|.++.... .+|.+.+.+||||+.++.- .++|.
T Consensus 156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvGk----p~~i~ 217 (288)
T PRK14171 156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIGS----PLKLT 217 (288)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----CCccC
Confidence 48999999999986 69999999999999999887532 3689999999999999984 36888
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 218 ~~~---vk~GavVIDvGin~ 234 (288)
T PRK14171 218 AEY---FNPESIVIDVGINR 234 (288)
T ss_pred HHH---cCCCCEEEEeeccc
Confidence 855 67999999999543
No 146
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.52 E-value=0.00032 Score=73.83 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=66.3
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.| .+|+.+|.+|..-|++|..+.... .+|.+.+++||+|+.+++- .++|.
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGk----p~~i~ 215 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGK----PNLIT 215 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCc----ccccC
Confidence 5899999999999 899999999999999999886432 3678999999999999974 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 216 ~~~---vk~gavvIDvGin~ 232 (281)
T PRK14183 216 EDM---VKEGAIVIDIGINR 232 (281)
T ss_pred HHH---cCCCcEEEEeeccc
Confidence 755 67999999999544
No 147
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.52 E-value=0.00014 Score=76.85 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=70.0
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC-CcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG-KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~-~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
-|.||+|+|||||.=|.+=|.+|+-.|.+|++--|..... +.+... ...+.+.+|+.+.||+|.+.+|...+. .++.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~d-Gf~V~~v~ea~k~ADvim~L~PDe~q~-~vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKED-GFKVYTVEEAAKRADVVMILLPDEQQK-EVYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhc-CCEeecHHHHhhcCCEEEEeCchhhHH-HHHH
Confidence 3899999999999999999999999999988876655332 222223 344679999999999999999975553 4555
Q ss_pred HHHHhccCCCcEE
Q 006758 238 AECLQHIKPGAFL 250 (632)
Q Consensus 238 ~~~L~~MK~GAvL 250 (632)
.+.-..||.|+.|
T Consensus 93 ~~I~p~Lk~G~aL 105 (338)
T COG0059 93 KEIAPNLKEGAAL 105 (338)
T ss_pred HHhhhhhcCCceE
Confidence 6777788888854
No 148
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.50 E-value=0.00041 Score=71.68 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=64.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 162 GLVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG----m~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.++|||||+|+||.++++.|..-| -+|++++++.... +.....+..+++.+||+|++++|- ..+..++.
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp-~~~~~vl~ 75 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVKP-DLAGKVLL 75 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeCH-HHHHHHHH
Confidence 357999999999999999998765 2599998865331 223345777888999999999884 44556654
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL 268 (632)
+....++++. +|.+.-|- ..+.+.+.+
T Consensus 76 -~i~~~l~~~~-iIS~~aGi--~~~~l~~~~ 102 (260)
T PTZ00431 76 -EIKPYLGSKL-LISICGGL--NLKTLEEMV 102 (260)
T ss_pred -HHHhhccCCE-EEEEeCCc--cHHHHHHHc
Confidence 3333455554 45554443 344444444
No 149
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.48 E-value=0.00026 Score=76.29 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=62.1
Q ss_pred EEEEeCChhhHHHHHHHhh-CCCEEEEECCCCCCC----Cc--ccc--------------cCceecCCHHHHhccCCEEE
Q 006758 165 LGIVGRSASARALATRSLS-FKMSVLYFDVPEGKG----KV--TFP--------------SAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~Lka-fGm~V~~~dr~~~~~----~~--~~~--------------~g~~~~~sL~eLL~~ADVV~ 223 (632)
|||+|+|+||+.+++.+.. -+++|+++....... .. .++ .+.....++++++..+|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999764 478887765322110 00 000 01122346999999999999
Q ss_pred EccCCChhhHhhccHHHHhccCCCcEEEEc
Q 006758 224 LHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 224 l~lPlT~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
.|.| .+.++.+++.+..|+++++|+-.
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~ 107 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGG 107 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECC
Confidence 8865 56788999999999999998864
No 150
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.48 E-value=0.00043 Score=72.96 Aligned_cols=78 Identities=28% Similarity=0.431 Sum_probs=66.5
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|...|++|.++.... .+|.+.+++||+|+.+++- .++|+
T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~----p~~i~ 214 (282)
T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGV----PHFIG 214 (282)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCC----cCccC
Confidence 47999999999986 69999999999999999986432 3688999999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 215 ~~~---vk~GavVIDvGin~ 231 (282)
T PRK14169 215 ADA---VKPGAVVIDVGISR 231 (282)
T ss_pred HHH---cCCCcEEEEeeccc
Confidence 764 67999999999654
No 151
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.45 E-value=0.00043 Score=73.45 Aligned_cols=79 Identities=27% Similarity=0.363 Sum_probs=67.1
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|...|++|..+.... .+|.+.+++||+|+.+++- .++|.
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGk----p~~i~ 216 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGR----PNLIG 216 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----cCccC
Confidence 48999999999986 69999999999999999986432 3788999999999999985 36788
Q ss_pred HHHHhccCCCcEEEEcCCChh
Q 006758 238 AECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i 258 (632)
.+. +|+|+++||+|--.+
T Consensus 217 ~~~---ik~gavVIDvGin~~ 234 (297)
T PRK14186 217 AEM---VKPGAVVVDVGIHRL 234 (297)
T ss_pred HHH---cCCCCEEEEeccccc
Confidence 755 679999999997654
No 152
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.44 E-value=0.00079 Score=68.61 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=100.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCE---EEEECCCC----CCCC------cccc--cCceec-CCHHHHhccCCEE
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMS---VLYFDVPE----GKGK------VTFP--SAARRM-DTLNDLLAASDVI 222 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~---V~~~dr~~----~~~~------~~~~--~g~~~~-~sL~eLL~~ADVV 222 (632)
.+.++++.|+|.|.+|+.+|..|...|++ |+++||+. .... ..+. ...... .+|.+.+.++|+|
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvl 101 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVF 101 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEE
Confidence 37899999999999999999999999984 99999983 2210 0010 000011 3687888999999
Q ss_pred EEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCC
Q 006758 223 SLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPR 302 (632)
Q Consensus 223 ~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPH 302 (632)
+.+.| .++++.+.++.|.++.+++..+. ...++-+.+|.+.|. . ...|...-- .....|+++=|-
T Consensus 102 IgaT~-----~G~~~~~~l~~m~~~~ivf~lsn--P~~e~~~~~A~~~ga-~-i~a~G~~~~------~~Q~nn~~~fPg 166 (226)
T cd05311 102 IGVSR-----PGVVKKEMIKKMAKDPIVFALAN--PVPEIWPEEAKEAGA-D-IVATGRSDF------PNQVNNVLGFPG 166 (226)
T ss_pred EeCCC-----CCCCCHHHHHhhCCCCEEEEeCC--CCCcCCHHHHHHcCC-c-EEEeCCCCC------ccccceeeecch
Confidence 99987 37899999999999999998883 334444445544432 1 133432211 125678999997
Q ss_pred CCCccH-----HHHHHHHHHHHHHHHHHH
Q 006758 303 SADYSE-----EVWMEIRDKAISVLQTFF 326 (632)
Q Consensus 303 iAg~T~-----ea~~~~~~~a~~nL~~fL 326 (632)
++-... ..-++|...+++.|..+.
T Consensus 167 ~~~g~~~~~~~~i~~~m~~~aa~~la~~~ 195 (226)
T cd05311 167 IFRGALDVRATKITEEMKLAAAEAIADLA 195 (226)
T ss_pred hhHHHHHcCCcCCCHHHHHHHHHHHHhhC
Confidence 543221 123556666666666653
No 153
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.44 E-value=0.0005 Score=72.46 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=66.7
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|...|++|.++.... .+|.+...+||+|+.+++- .++|+
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGk----p~~i~ 215 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGC----VNLLR 215 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCC----cCccC
Confidence 48999999999986 69999999999999999887543 3689999999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. .|+|+++||+|--.
T Consensus 216 ~~~---vk~GavVIDvGin~ 232 (282)
T PRK14166 216 SDM---VKEGVIVVDVGINR 232 (282)
T ss_pred HHH---cCCCCEEEEecccc
Confidence 864 67999999999544
No 154
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.43 E-value=0.00053 Score=72.17 Aligned_cols=78 Identities=21% Similarity=0.358 Sum_probs=66.7
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|..-|++|..+.... .+|.+...+||+|+.+++- .++|.
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvGk----p~~i~ 216 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIGR----PKFID 216 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCC----cCccC
Confidence 48999999999986 69999999999999999997532 3789999999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 217 ~~~---ik~gavVIDvGin~ 233 (278)
T PRK14172 217 EEY---VKEGAIVIDVGTSS 233 (278)
T ss_pred HHH---cCCCcEEEEeeccc
Confidence 765 67999999998544
No 155
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.41 E-value=0.00027 Score=75.22 Aligned_cols=89 Identities=22% Similarity=0.231 Sum_probs=63.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CC-CEEEEECCCCCCCCc---cc---ccCceecCCHHHHhccCCEEEEccCCChhh
Q 006758 161 RGLVLGIVGRSASARALATRSLS-FK-MSVLYFDVPEGKGKV---TF---PSAARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG-m~V~~~dr~~~~~~~---~~---~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
..++|+|||.|.+|+.+++.+.. ++ .+|.+|+|+...... .+ ...+....++++++.+||||+++.|.+
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 57889999999999999985553 55 589999998654321 11 011334578999999999998887754
Q ss_pred HhhccHHHHhccCCCcEEEEcCC
Q 006758 233 IQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgR 255 (632)
..+|.. +.++||+++.-++.
T Consensus 201 ~pvl~~---~~l~~g~~i~~ig~ 220 (314)
T PRK06141 201 EPLVRG---EWLKPGTHLDLVGN 220 (314)
T ss_pred CCEecH---HHcCCCCEEEeeCC
Confidence 466765 45789995554554
No 156
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.40 E-value=0.00054 Score=73.91 Aligned_cols=78 Identities=14% Similarity=0.272 Sum_probs=66.5
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.||++.|||-+. +|+.+|.+|..-|++|.++.... .+|.+..++||||+.+++- .++|.
T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGk----p~~v~ 272 (345)
T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGI----PNLVR 272 (345)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCC----cCccC
Confidence 58999999999987 59999999999999999886542 3678999999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 273 ~d~---vk~GavVIDVGin~ 289 (345)
T PLN02897 273 GSW---LKPGAVVIDVGTTP 289 (345)
T ss_pred HHH---cCCCCEEEEccccc
Confidence 755 67999999999654
No 157
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.40 E-value=0.00063 Score=71.80 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=66.5
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|..-|++|..++... .+|.+..++||+|+.+++- .++|.
T Consensus 156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvGk----~~~i~ 217 (284)
T PRK14177 156 DVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVGK----PEFIK 217 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCCC----cCccC
Confidence 48999999999986 69999999999999999997542 3688999999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 218 ~~~---ik~gavVIDvGin~ 234 (284)
T PRK14177 218 ADW---ISEGAVLLDAGYNP 234 (284)
T ss_pred HHH---cCCCCEEEEecCcc
Confidence 755 67999999999644
No 158
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.38 E-value=0.00066 Score=72.11 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=66.6
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|..-|++|+.+.... .+|.+.+++||+|+.++.- .++|.
T Consensus 164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T--------------~nl~~~~~~ADIvv~AvGk----~~~i~ 225 (299)
T PLN02516 164 PIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT--------------PDPESIVREADIVIAAAGQ----AMMIK 225 (299)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCC----cCccC
Confidence 58999999999986 59999999999999999996542 3688999999999999975 37888
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 226 ~~~---vk~gavVIDvGin~ 242 (299)
T PLN02516 226 GDW---IKPGAAVIDVGTNA 242 (299)
T ss_pred HHH---cCCCCEEEEeeccc
Confidence 755 67999999999644
No 159
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.37 E-value=0.00063 Score=73.80 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=66.7
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.||++.|||-+. +|+.+|.+|...|++|..+.... .+|.+.+++||||+.+++- .++|.
T Consensus 228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvGk----p~~i~ 289 (364)
T PLN02616 228 EIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVGQ----PNMVR 289 (364)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCCC----cCcCC
Confidence 68999999999986 59999999999999999986432 3788999999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 290 ~d~---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 290 GSW---IKPGAVVIDVGINP 306 (364)
T ss_pred HHH---cCCCCEEEeccccc
Confidence 855 67999999999644
No 160
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.37 E-value=0.0007 Score=71.58 Aligned_cols=79 Identities=24% Similarity=0.356 Sum_probs=67.3
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|...|++|..+.... .+|.+.+.+||+|+.+++- .++|+
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGk----p~~i~ 213 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGR----PHLIT 213 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCccC
Confidence 58999999999976 69999999999999999887542 3688999999999999975 47888
Q ss_pred HHHHhccCCCcEEEEcCCChh
Q 006758 238 AECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i 258 (632)
.+. +|+|+++||+|--.+
T Consensus 214 ~~~---vk~GavVIDVGin~~ 231 (287)
T PRK14173 214 PEM---VRPGAVVVDVGINRV 231 (287)
T ss_pred HHH---cCCCCEEEEccCccc
Confidence 765 579999999997654
No 161
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.37 E-value=0.0007 Score=71.41 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=66.1
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|..-|++|..+.... .+|.+.+++||+|+.+++- .++|.
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGk----p~~i~ 216 (282)
T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGK----PNFIT 216 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCC----cCcCC
Confidence 48999999999986 69999999999999999987542 3788899999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 217 ~~~---vk~gavVIDvGin~ 233 (282)
T PRK14180 217 ADM---VKEGAVVIDVGINH 233 (282)
T ss_pred HHH---cCCCcEEEEecccc
Confidence 754 67999999998533
No 162
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.36 E-value=0.00058 Score=71.74 Aligned_cols=109 Identities=24% Similarity=0.351 Sum_probs=82.5
Q ss_pred cccCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
+|+|+++.|||.|+| |+.||..|...+++|.++.... .+|.+..++||+|+.++-. .++|.
T Consensus 153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~----p~~i~ 214 (283)
T COG0190 153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGK----PHFIK 214 (283)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCC----ccccc
Confidence 589999999999985 9999999999999999998654 3778899999999999875 47787
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC-CCCCCCCccccCCCcEEEcCCCCCccHH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA-EGPQWMEAWVREMPNVLILPRSADYSEE 309 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf-E~P~~~~~pL~~~pNVIiTPHiAg~T~e 309 (632)
+ ..+|+|+++|++|--.+-+ +++.| ||- +.- ..-.-.+||=-||.-.-
T Consensus 215 ~---d~vk~gavVIDVGinrv~~----------~kl~G---DVdf~~v--------~~~a~~iTPVPGGVGPm 263 (283)
T COG0190 215 A---DMVKPGAVVIDVGINRVND----------GKLVG---DVDFDSV--------KEKASAITPVPGGVGPM 263 (283)
T ss_pred c---ccccCCCEEEecCCccccC----------CceEe---eccHHHH--------HHhhcccCCCCCccCHH
Confidence 6 4478999999999755443 55543 653 211 11233588877776553
No 163
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.35 E-value=0.00075 Score=71.30 Aligned_cols=78 Identities=27% Similarity=0.394 Sum_probs=65.7
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhC----CCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSF----KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lkaf----Gm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
++.|+++.|||.+. +|+.+|.+|..- +++|..+.... .+|.+.+++||+|+.+++- .
T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~----p 211 (287)
T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGV----P 211 (287)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----c
Confidence 48999999999986 699999999877 78999886532 3689999999999999985 3
Q ss_pred hhccHHHHhccCCCcEEEEcCCCh
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
++|..+. +|+|+++||+|--.
T Consensus 212 ~~i~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 212 LFIKEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred CccCHHH---cCCCCEEEEecccc
Confidence 6788855 67999999999655
No 164
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.34 E-value=0.00079 Score=71.36 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=66.8
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|...|++|.++.... .+|.+.+.+||+|+.+++- .++|.
T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGk----p~~i~ 218 (294)
T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGI----PNFVK 218 (294)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----cCccC
Confidence 48999999999986 69999999999999999987643 3688999999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 219 ~~~---ik~gaiVIDVGin~ 235 (294)
T PRK14187 219 YSW---IKKGAIVIDVGINS 235 (294)
T ss_pred HHH---cCCCCEEEEecccc
Confidence 765 56999999998654
No 165
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.33 E-value=0.00041 Score=71.95 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=74.4
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---ccc-cCceecCCHHHH-hccCCEEEEccCCCh--hh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFP-SAARRMDTLNDL-LAASDVISLHCAVTD--ET 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---~~~-~g~~~~~sL~eL-L~~ADVV~l~lPlT~--~T 232 (632)
..+++++|+|.|.+|+.++..+...|++|.+++|+...... .+. .+.....++++. +..+|+|++++|..- ..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 46889999999999999999999999999999987543221 000 011122344443 357999999999742 11
Q ss_pred Hh-hccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC
Q 006758 233 IQ-IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (632)
Q Consensus 233 ~~-lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf 281 (632)
.. .+. +..++++.+++++.-... +. .|++..++..+. .+|..
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~G~~--~vdG~ 237 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSLGTK--TIDGL 237 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHCCCe--eeCCH
Confidence 11 122 345778888898876553 23 466666655443 55553
No 166
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.32 E-value=0.00073 Score=71.71 Aligned_cols=78 Identities=21% Similarity=0.351 Sum_probs=65.4
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhh----CCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLS----FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lka----fGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
++.|+++.|||.+. +|+.+|.+|.. .|++|..+.... .++.+.+++||+|+.+++..
T Consensus 156 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~---- 217 (295)
T PRK14174 156 ETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKA---- 217 (295)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCcc----
Confidence 48999999999986 69999999886 588888877542 36899999999999999652
Q ss_pred hhccHHHHhccCCCcEEEEcCCCh
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
++|..+.+ |+|+++||+|-..
T Consensus 218 ~li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 218 RFITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred CccCHHHc---CCCCEEEEeeccc
Confidence 78998776 8999999998654
No 167
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.31 E-value=0.00089 Score=70.60 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=66.9
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||-+. +|+.+|.+|..-|++|..+.... .+|.+.+++||+|+.+++- .++|.
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk----~~~i~ 215 (282)
T PRK14182 154 DPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGK----AELVK 215 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCccC
Confidence 47999999999986 69999999999999999986542 3688999999999999984 46888
Q ss_pred HHHHhccCCCcEEEEcCCChh
Q 006758 238 AECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i 258 (632)
.+. +|+|+++||+|--.+
T Consensus 216 ~~~---ik~gaiVIDvGin~~ 233 (282)
T PRK14182 216 GAW---VKEGAVVIDVGMNRL 233 (282)
T ss_pred HHH---cCCCCEEEEeeceec
Confidence 855 679999999996553
No 168
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.31 E-value=0.002 Score=72.62 Aligned_cols=108 Identities=8% Similarity=0.084 Sum_probs=73.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCEEEEECCCCCCCCc------c-ccc----------C--ceecCCHHHHhccCCE
Q 006758 163 LVLGIVGRSASARALATRSLSF--KMSVLYFDVPEGKGKV------T-FPS----------A--ARRMDTLNDLLAASDV 221 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--Gm~V~~~dr~~~~~~~------~-~~~----------g--~~~~~sL~eLL~~ADV 221 (632)
++|+|||+|.+|..+|..|... |++|++||.+....+. . .+. + .....++.+.+..||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999855 6899999987532210 0 000 0 2223456778899999
Q ss_pred EEEccCCCh-----------hhHhhc--cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 222 ISLHCAVTD-----------ETIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 222 V~l~lPlT~-----------~T~~lI--~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
+++|+|... +...+. -+..-..+++|.++|.-+.-.+=-.+.+...|.+
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 999996322 222232 2346667899999998888665545566676665
No 169
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.30 E-value=0.00083 Score=67.29 Aligned_cols=95 Identities=8% Similarity=0.166 Sum_probs=70.1
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC---CCCCCcc-c---ccC-------------------ce---
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP---EGKGKVT-F---PSA-------------------AR--- 207 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~---~~~~~~~-~---~~g-------------------~~--- 207 (632)
..|..++|+|||.|.+|..+|..|...|. +|.++|.. ....... + ..+ +.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 46899999999999999999999999999 79999987 2111100 0 000 00
Q ss_pred ---ecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEc
Q 006758 208 ---RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 208 ---~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
..+++.+++..+|+|+.+ ..+.+++.++.......++...++...
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~ 144 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAAS 144 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 012455678899999999 678889999888888888877777643
No 170
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.30 E-value=0.00052 Score=74.94 Aligned_cols=118 Identities=17% Similarity=0.132 Sum_probs=79.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------------------cccccCceecCCHHHHhccCCEEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------------------VTFPSAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-------------------~~~~~g~~~~~sL~eLL~~ADVV~ 223 (632)
.+|||||+|-||-.+|..+...|++|++||.+....+ .....|.....+=-+.++.||+++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i 89 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI 89 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence 7899999999999999999999999999998764322 011112122222223455999999
Q ss_pred EccCCCh------hhHhhcc--HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcC--CcceEEeecC
Q 006758 224 LHCAVTD------ETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG--TLAGCALDGA 281 (632)
Q Consensus 224 l~lPlT~------~T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg--~I~GAaLDVf 281 (632)
+|+|..- +---+.+ +.....||+|.++|==|.-..=-.+.++.-|.+. .|. ..-|.+
T Consensus 90 I~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~ 156 (436)
T COG0677 90 ICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFY 156 (436)
T ss_pred EEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceee
Confidence 9999421 1111222 3366789999999988887776677777766653 343 446664
No 171
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00038 Score=72.82 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=72.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCCC-cccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG----m~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++|||||.|+||++|+.-|..-| -+|++.+|+..... .....+.....+..++..++|+|++++.- + .-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP--q----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP--Q----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh--H----hH
Confidence 57999999999999999999888 58999999875442 11112233356778899999999999873 2 22
Q ss_pred HHHHhccC---CCcEEEEcCCChhhcHHHHHHHHH
Q 006758 238 AECLQHIK---PGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 238 ~~~L~~MK---~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
.+.+..++ ++.+||.++=|- ..+.|.+.|.
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAGv--~~~~l~~~l~ 108 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAGV--SIETLERLLG 108 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCCC--CHHHHHHHcC
Confidence 45666666 699999998774 4455666654
No 172
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.27 E-value=0.00082 Score=71.03 Aligned_cols=78 Identities=22% Similarity=0.265 Sum_probs=65.9
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhh----CCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLS----FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lka----fGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
++.||++.|||.+. +|+.+|.+|.. -|++|..+..+. .+|.+.+.+||+|+.+++. .
T Consensus 154 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~----p 215 (286)
T PRK14184 154 SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGR----P 215 (286)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCC----C
Confidence 47999999999987 59999999998 789999887542 3789999999999999964 5
Q ss_pred hhccHHHHhccCCCcEEEEcCCCh
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
++|..+.+ |+|+++||+|--.
T Consensus 216 ~li~~~~v---k~GavVIDVGi~~ 236 (286)
T PRK14184 216 RFVTADMV---KPGAVVVDVGINR 236 (286)
T ss_pred CcCCHHHc---CCCCEEEEeeeec
Confidence 67888766 8999999998543
No 173
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.26 E-value=0.0011 Score=70.10 Aligned_cols=109 Identities=22% Similarity=0.315 Sum_probs=80.9
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhh--CCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLS--FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lka--fGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
++.|+++.|||.+. +|+.+|.+|.. .|++|.++.... .+|.+.+++||+|+.+++- .++
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T--------------~~l~~~~k~ADIvV~AvGk----p~~ 216 (284)
T PRK14193 155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT--------------RDLAAHTRRADIIVAAAGV----AHL 216 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC--------------CCHHHHHHhCCEEEEecCC----cCc
Confidence 58999999999976 69999999987 799999987542 3789999999999999985 367
Q ss_pred ccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHH
Q 006758 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEE 309 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~e 309 (632)
|..+. +|+|+++||+|.-.+ .+|++.| ||-+. ..+.. -.+||--+|.-.-
T Consensus 217 i~~~~---ik~GavVIDvGin~~----------~~gkl~G---Dvd~~-------v~~~a-~~iTPVPGGVGp~ 266 (284)
T PRK14193 217 VTADM---VKPGAAVLDVGVSRA----------GDGKLVG---DVHPD-------VWEVA-GAVSPNPGGVGPM 266 (284)
T ss_pred cCHHH---cCCCCEEEEcccccc----------CCCcEEe---ecCHh-------HHhhC-CEEeCCCCChhHH
Confidence 88755 679999999997553 2455443 55421 01111 2589986776543
No 174
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.24 E-value=0.00063 Score=72.80 Aligned_cols=91 Identities=14% Similarity=0.232 Sum_probs=67.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-C-CCEEEEECCCCCCCCc------ccccCceecCCHHHHhccCCEEEEccCCChhh
Q 006758 161 RGLVLGIVGRSASARALATRSLS-F-KMSVLYFDVPEGKGKV------TFPSAARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-f-Gm~V~~~dr~~~~~~~------~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
.-+++||||.|.+|+..++.+.. + .-+|.+||++...... .+...+..+.+.++++++||||++|+|. +
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s---~ 203 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPS---R 203 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCC---C
Confidence 35789999999999997776653 3 3589999998754321 1111134467899999999999999885 3
Q ss_pred HhhccHHHHhccCCCcEEEEcCCCh
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
..+|..+ .+|||+.++.+|.-.
T Consensus 204 ~P~~~~~---~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 204 KPVVKAD---WVSEGTHINAIGADA 225 (325)
T ss_pred CcEecHH---HcCCCCEEEecCCCC
Confidence 4677664 469999999999643
No 175
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.24 E-value=0.00041 Score=72.44 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=51.9
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCc---ccccCc-eec-CCHHHHhccCCEEEEccCCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKV---TFPSAA-RRM-DTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~~~~~---~~~~g~-~~~-~sL~eLL~~ADVV~l~lPlT 229 (632)
.+.++++.|+|.|.+|+.++..|..+| .+|.+++|+....+. .+.... ... .++.+.+..+|+||+++|..
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 368899999999999999999999999 699999998643321 111000 011 13456778899999999974
No 176
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=97.24 E-value=2.8e-05 Score=83.73 Aligned_cols=204 Identities=17% Similarity=0.061 Sum_probs=155.0
Q ss_pred HHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccC-cEEEEEeCChhhHHHHHHHh--hC-CCEEEEECCCCCCCCc
Q 006758 125 LLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRG-LVLGIVGRSASARALATRSL--SF-KMSVLYFDVPEGKGKV 200 (632)
Q Consensus 125 liLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~G-ktVGIIGlG~IG~~vA~~Lk--af-Gm~V~~~dr~~~~~~~ 200 (632)
..+.+.+..+.........++|-....|+ +++ .|+++. .+..+++|-.+.. +. -|.+.+++-.....++
T Consensus 20 ~~~~lngp~h~~p~~aLld~rdc~vemPi------lk~~atvafc-daqstqeIhekvLneavgam~yh~i~l~reDlEk 92 (435)
T KOG0067|consen 20 RPLGLNGPLHPRPLVALLDGRDCGVEMPI------LKDLATVAFC-DAQSTQEIHEKVLNEAVGAMMYHTITLPREDLEK 92 (435)
T ss_pred eecccCCCCCCCcchhhcccccccccchh------hhcchheeee-cccchHHHHHHHHHHhhhcceeeecccchhhHHH
Confidence 34444555544444445678887766665 222 244443 4567888877644 22 4678888766544442
Q ss_pred ccccC----ceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceE
Q 006758 201 TFPSA----ARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGC 276 (632)
Q Consensus 201 ~~~~g----~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GA 276 (632)
..+.. +....++.++.+.+|+.|.+|-++..+...++...+.+.+ +.+..|+.-....++.+..+.+..+.+.++
T Consensus 93 fkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl-~l~rrntw~cq~l~eg~~~q~~~q~~e~a~ 171 (435)
T KOG0067|consen 93 FKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHIL-NLYRRNTWLCQALREGTCTQGLEQVREAAC 171 (435)
T ss_pred hhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHH-hhhcccchhhhhhcccceeechhhhhhhhh
Confidence 22222 2235688899999999999999999999999999999998 999999999999999999999999999999
Q ss_pred EeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCc
Q 006758 277 ALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (632)
Q Consensus 277 aLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn~~~ 340 (632)
++|-.+.|.+...+ ..+|+.+.|-.|-+....+..+...+.+-+.++|..+.++. +.+..
T Consensus 172 g~~~~~G~~~g~~g--~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVyt--lqd~~ 231 (435)
T KOG0067|consen 172 GLARIRGPTLGLIG--FGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYT--LQDLL 231 (435)
T ss_pred ccccccccceeeec--cccccceehhhhhcccceeeeecchhhhhhhhhcccceecc--cchhh
Confidence 99999988876644 78999999999999999999999999999999997776554 44444
No 177
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.22 E-value=0.00071 Score=72.68 Aligned_cols=92 Identities=10% Similarity=0.106 Sum_probs=64.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC---------Cccc------ccCceecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG---------KVTF------PSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~---------~~~~------~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
++|+|||.|.+|..+|..|...| .|..|.++.... .... +.......++.+.+..+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 57999999999999999999988 577776653211 0001 1122334678888999999999999
Q ss_pred CChhhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
. ..++.++ ++.-..+++++.+|++.-|=
T Consensus 87 s-~~~~~vl-~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 S-HGFRGVL-TELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred H-HHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence 3 4455554 23445578888899888763
No 178
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.20 E-value=0.00074 Score=71.64 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=67.4
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCc---ccc-cCc-eecCCHHHHhccCCEEEEccCCChhh
Q 006758 160 CRGLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKV---TFP-SAA-RRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~Lka-fGm-~V~~~dr~~~~~~~---~~~-~g~-~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
...++|+|||.|.+|+..++.+.. ++. +|.+|+|+...... .+. .+. ..+.++++++.++|+|+++.|.+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~--- 199 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR--- 199 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---
Confidence 356889999999999999999864 665 79999998643321 110 011 11468999999999999999864
Q ss_pred HhhccHHHHhccCCCcEEEEcCCCh
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
..+|.. .+|||+.++.+|.-.
T Consensus 200 ~Pl~~~----~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 200 TPVYPE----AARAGRLVVAVGAFT 220 (304)
T ss_pred CceeCc----cCCCCCEEEecCCCC
Confidence 366764 379999999999643
No 179
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.19 E-value=0.0014 Score=69.51 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=65.0
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhC----CCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSF----KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lkaf----Gm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
++.||++.|||.+. +|+.+|.+|..- +++|.++.... .+|.+.+.+||+|+.+++- .
T Consensus 154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGk----p 215 (293)
T PRK14185 154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQ----P 215 (293)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCC----c
Confidence 48999999999986 599999999865 79999886442 3788999999999999985 4
Q ss_pred hhccHHHHhccCCCcEEEEcCCCh
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
++|..+. +|+|+++||+|--.
T Consensus 216 ~~i~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 216 EFVKADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred CccCHHH---cCCCCEEEEecCcc
Confidence 6788744 67999999999644
No 180
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.18 E-value=0.0017 Score=70.78 Aligned_cols=98 Identities=12% Similarity=0.176 Sum_probs=68.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCC-------CEEEEECCCCCC---------------CC----cccccCceecCCHH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFK-------MSVLYFDVPEGK---------------GK----VTFPSAARRMDTLN 213 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG-------m~V~~~dr~~~~---------------~~----~~~~~g~~~~~sL~ 213 (632)
+.-++|+|||.|..|.++|..|...| .+|..|.++... .. ..++..+....++.
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 44568999999999999999998665 789998776531 00 11233444457889
Q ss_pred HHhccCCEEEEccCCChhhHhhccHHHHh--ccCCCcEEEEcCCChhh
Q 006758 214 DLLAASDVISLHCAVTDETIQIINAECLQ--HIKPGAFLVNTGSSQLL 259 (632)
Q Consensus 214 eLL~~ADVV~l~lPlT~~T~~lI~~~~L~--~MK~GAvLINvgRG~iV 259 (632)
+++..||+|++++|- ...+.++ .+.-. .+++++++|+++=|=-.
T Consensus 89 eav~~aDiIvlAVPs-q~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 89 EAVEDADLLIFVIPH-QFLESVL-SQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred HHHhcCCEEEEEcCh-HHHHHHH-HHhccccccCCCCEEEEEeCCccc
Confidence 999999999999995 2334443 22222 46678899998776433
No 181
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.14 E-value=0.0014 Score=70.43 Aligned_cols=105 Identities=13% Similarity=0.192 Sum_probs=75.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC----------CC----CcccccCceecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG----------KG----KVTFPSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~----------~~----~~~~~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|+|||.|.-|.++|..|...|.+|..|.+.+. .. ...++.......+|.+++..||+|++.+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 5799999999999999999999999999987521 11 123344455667899999999999999995
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
...+.++. ..-..+++++.+|+++-|=-.+.-.+...+-
T Consensus 82 -~~~r~v~~-~l~~~l~~~~~iv~~sKGie~~t~~l~seii 120 (329)
T COG0240 82 -QALREVLR-QLKPLLLKDAIIVSATKGLEPETGRLLSEII 120 (329)
T ss_pred -HHHHHHHH-HHhhhccCCCeEEEEeccccCCCcchHHHHH
Confidence 33333332 2224668999999999876555444443333
No 182
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.13 E-value=0.0018 Score=68.72 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=63.4
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC---------C-----cccccCceecCCHHHHh-ccCCEEEEccCC
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG---------K-----VTFPSAARRMDTLNDLL-AASDVISLHCAV 228 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~---------~-----~~~~~g~~~~~sL~eLL-~~ADVV~l~lPl 228 (632)
+|+|||.|.||..+|..|...|.+|.+|+|+.... . ..++.......++.+.+ ..+|+|++++|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 69999999999999999999999999999864211 0 00111223345677766 589999999995
Q ss_pred ChhhHhhccHHHHh-ccCCCcEEEEcCCCh
Q 006758 229 TDETIQIINAECLQ-HIKPGAFLVNTGSSQ 257 (632)
Q Consensus 229 T~~T~~lI~~~~L~-~MK~GAvLINvgRG~ 257 (632)
..+..++. .... .+++++.+|.+.-|=
T Consensus 82 -~~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 82 -QQLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred -HHHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence 33444442 2333 567777777776664
No 183
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.11 E-value=0.002 Score=69.72 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=66.3
Q ss_pred EEEEEeCChhhHHHHHHHhhCC--------CEEEEECCCC-----C----------CCC----cccccCceecCCHHHHh
Q 006758 164 VLGIVGRSASARALATRSLSFK--------MSVLYFDVPE-----G----------KGK----VTFPSAARRMDTLNDLL 216 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG--------m~V~~~dr~~-----~----------~~~----~~~~~g~~~~~sL~eLL 216 (632)
+|+|||.|+.|.++|..|...| .+|..|.+.. . ... ..++.......++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 4899999999999999998767 8999998721 0 000 01122334456899999
Q ss_pred ccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChh
Q 006758 217 AASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 217 ~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
..||+|++++|. ...+.++ ...-..++++..+|+++-|=-
T Consensus 81 ~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred hcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCcc
Confidence 999999999995 3333333 334456788999999987743
No 184
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.11 E-value=0.0035 Score=73.92 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=83.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------ccc-------------cCceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFP-------------SAARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~~~-------------~g~~~~~sL~eLL~~ 218 (632)
++|+|||.|.||..||..+...|++|+.||++....+. ... .......++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 57999999999999999999999999999998643210 000 012223456 44799
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
||+|+=++|-.-+.+.-+-++.-..++++++|....++ +....|.+++.. .-..+++--|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~ 453 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFN 453 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCC
Confidence 99999999999998888888888889999998765553 445566666642 33335555554
No 185
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.10 E-value=0.0019 Score=68.56 Aligned_cols=78 Identities=19% Similarity=0.311 Sum_probs=64.5
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhC----CCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSF----KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lkaf----Gm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
.+.|+++.|||.+. +|+.+|.+|..- +++|..+.... .+|.+..++||+|+.++.- .
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGk----p 215 (297)
T PRK14167 154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGV----P 215 (297)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----c
Confidence 48999999999986 699999999865 89999875432 3688999999999999875 3
Q ss_pred hhccHHHHhccCCCcEEEEcCCCh
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
++|..+. +|+|+++||+|--.
T Consensus 216 ~~i~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 216 ELIDGSM---LSEGATVIDVGINR 236 (297)
T ss_pred CccCHHH---cCCCCEEEEccccc
Confidence 5888754 67999999999654
No 186
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.08 E-value=0.00065 Score=66.73 Aligned_cols=96 Identities=11% Similarity=0.031 Sum_probs=58.4
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---c----ccCc-----eecCCHHHHhccCCEEEEc
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT---F----PSAA-----RRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~---~----~~g~-----~~~~sL~eLL~~ADVV~l~ 225 (632)
.++++++.|+|. |.+|+.+++.|...|.+|.+++|+....... + .... ...+++.+.+.++|+|+.+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence 368999999995 9999999999999999999999875322100 0 0000 1112334667778888887
Q ss_pred cCCChhhHhhccHHHHhccCCCcEEEEcCCChh
Q 006758 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
.|....+ .+. .-...+++.+++|+.+...
T Consensus 105 t~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~ 133 (194)
T cd01078 105 GAAGVEL--LEK--LAWAPKPLAVAADVNAVPP 133 (194)
T ss_pred CCCCcee--chh--hhcccCceeEEEEccCCCC
Confidence 7754321 111 1112334556666555443
No 187
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.05 E-value=0.0023 Score=68.07 Aligned_cols=78 Identities=22% Similarity=0.364 Sum_probs=64.8
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhC----CCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSF----KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lkaf----Gm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
++.|++|.|||.+. +|+.+|.+|..- +++|..+.... .+|.+.+++||+|+.++.- .
T Consensus 158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvGk----p 219 (297)
T PRK14168 158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAGV----P 219 (297)
T ss_pred CCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecCC----c
Confidence 58999999999986 699999999876 78999875432 3688999999999999874 4
Q ss_pred hhccHHHHhccCCCcEEEEcCCCh
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
++|..+. +|+|+++||+|--.
T Consensus 220 ~~i~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 220 NLVKPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred CccCHHH---cCCCCEEEecCCCc
Confidence 6788755 67999999999655
No 188
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.04 E-value=0.0014 Score=69.97 Aligned_cols=89 Identities=15% Similarity=0.243 Sum_probs=66.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHh-hCCC-EEEEECCCCCCCCc-------ccccCceecCCHHHHhccCCEEEEccCCChh
Q 006758 161 RGLVLGIVGRSASARALATRSL-SFKM-SVLYFDVPEGKGKV-------TFPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lk-afGm-~V~~~dr~~~~~~~-------~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
..++++|||.|.+|+..+..+. ..++ +|.+|+|+...... .+......+.++++++.++|+|+++.|.+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4678999999999999887765 4565 79999998654321 01112234678999999999999999964
Q ss_pred hHhhccHHHHhccCCCcEEEEcCCC
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
..+|. ..+|+|+.++.+|.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 34554 456999999999874
No 189
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.01 E-value=0.001 Score=70.83 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=58.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCC------cccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGK------VTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fGm-~V~~~dr~~~~~~------~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
-+++||||.|..|..-++.+.. ++. +|.+|+|+....+ ..+...+..++++++++++||||+++.|.+..+
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~- 206 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA- 206 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-
Confidence 3589999999999999988764 666 8999999864332 112223445789999999999999998865533
Q ss_pred hhccHHHHhccCCCcEEEEcCCChh
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
-+|..+ .++||+.++.+|....
T Consensus 207 P~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 207 PVFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp ESB-GG---GS-TT-EEEE-S-SST
T ss_pred ccccHH---HcCCCcEEEEecCCCC
Confidence 677764 6789999999997644
No 190
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.99 E-value=0.0065 Score=64.27 Aligned_cols=111 Identities=13% Similarity=0.077 Sum_probs=72.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC--cc--c--ccC------ceecCCHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK--VT--F--PSA------ARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~--~~--~--~~g------~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
++|+|||.|.||..+|..|...|.+|.++.+...... .. . ..+ .....+++ .+..+|+|+++++...
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vilavK~~~ 84 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVGLKTTA 84 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEEecCCC
Confidence 5799999999999999999999999999998652110 00 0 001 00112233 4678999999999643
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEE
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCA 277 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAa 277 (632)
+...+ ......+++++++|...-| +-.++.|.+.+-..++.++.
T Consensus 85 -~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~ 128 (313)
T PRK06249 85 -NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL 128 (313)
T ss_pred -hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence 33333 2334446788888888776 34566677777666665543
No 191
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.0037 Score=68.39 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=92.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-----cCceecCCHHHH---hccCCEEEEccCCChhhHh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-----SAARRMDTLNDL---LAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-----~g~~~~~sL~eL---L~~ADVV~l~lPlT~~T~~ 234 (632)
..||+||+|.||+.+|.+....|++|.+|+|+....+..+. .......+++|+ |+.---|++++-...-...
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 46999999999999999999999999999999755441111 122334566665 6667788888766432234
Q ss_pred hccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC
Q 006758 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf 281 (632)
.| ++.+..|-+|-++|+-|...--|...-.++|.+..|...+.=|-
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVS 129 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVS 129 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccc
Confidence 44 57888999999999999999999999999999999888887775
No 192
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.95 E-value=0.0022 Score=68.60 Aligned_cols=89 Identities=18% Similarity=0.236 Sum_probs=66.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHh-hCCC-EEEEECCCCCCCCcc-------cccCceecCCHHHHhccCCEEEEccCCChh
Q 006758 161 RGLVLGIVGRSASARALATRSL-SFKM-SVLYFDVPEGKGKVT-------FPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lk-afGm-~V~~~dr~~~~~~~~-------~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
..++++|||.|.+|+..++.+. .++. +|.+|+|+....... +...+..++++++.+.+||+|+++.|.+
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 4578999999999999999887 4775 799999986543210 1111233578999999999999998863
Q ss_pred hHhhccHHHHhccCCCcEEEEcCC
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
..+|..+. +|+|+.++.++.
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeCC
Confidence 36776644 689998887774
No 193
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.95 E-value=0.0073 Score=71.18 Aligned_cols=116 Identities=14% Similarity=0.010 Sum_probs=83.8
Q ss_pred cEEEEEeCChhhHHHHHHHh-hCCCEEEEECCCCCCCCcc------------------------cccCceecCCHHHHhc
Q 006758 163 LVLGIVGRSASARALATRSL-SFKMSVLYFDVPEGKGKVT------------------------FPSAARRMDTLNDLLA 217 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lk-afGm~V~~~dr~~~~~~~~------------------------~~~g~~~~~sL~eLL~ 217 (632)
++|+|||.|.||..||..+. ..|++|..||++....... .........++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 67999999999999999988 7899999999875321100 00012223455 4579
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
+||+|+=++|-+.+.+.-+-++.=+.++|+++|....++ +....|.+.+.. .-..+++--|.
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff~ 450 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYFS 450 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecCC
Confidence 999999999999998888888887889999999866554 455666666642 23345666664
No 194
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.95 E-value=0.0053 Score=65.65 Aligned_cols=119 Identities=19% Similarity=0.226 Sum_probs=72.3
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCC---------cc-cc--cCceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGK---------VT-FP--SAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~~~~---------~~-~~--~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
+..++|+|||.|.||..+|..+...| .+|..||.+..... .. .. .......+++ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45679999999999999999988777 69999998763221 00 00 0111224556 779999999999
Q ss_pred --CCChh-h--------Hhhcc--HHHHhccCCCcEEEEcCCChhhcHHHHHHHHH--cCCcceEE--ee
Q 006758 227 --AVTDE-T--------IQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI--DGTLAGCA--LD 279 (632)
Q Consensus 227 --PlT~~-T--------~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~--sg~I~GAa--LD 279 (632)
|-.+. + -.++- .+.+....|.+++||++--.-+-...+.+.-. ..++.|.+ ||
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 44331 1 11111 23444556889999986533233333433321 24455444 66
No 195
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=96.93 E-value=0.0087 Score=63.99 Aligned_cols=119 Identities=16% Similarity=0.053 Sum_probs=82.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-----------cccccC-------------ceecCCHHHHhc
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-----------VTFPSA-------------ARRMDTLNDLLA 217 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-----------~~~~~g-------------~~~~~sL~eLL~ 217 (632)
-++|||||.|.||..+|..+..-|+.|..+|++..... .....+ .....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 47899999999999999999887799999999843211 000000 11122333 688
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCC
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP 284 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P 284 (632)
+||+|+=++|-+-+.++-+-++.=...+|+++|=...++ +...+|.+++ ...=..+++=-|.+|
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~-~rper~iG~HFfNP~ 145 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEAL-KRPERFIGLHFFNPV 145 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHh-CCchhEEEEeccCCC
Confidence 999999999999988887777777888999998643332 4456777777 334344566555543
No 196
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.92 E-value=0.0013 Score=69.23 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=51.6
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccc-------cc-CceecCCHHHHhccCCEEEEccCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTF-------PS-AARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~-------~~-g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
+.+++|.|||.|.+|++++..|...|+ +|.++||+....+... .. ......++.+.+..+|+||++.|.
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~ 202 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPT 202 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcC
Confidence 578999999999999999999999998 8999999864332110 00 111234556677889999999986
No 197
>PRK06046 alanine dehydrogenase; Validated
Probab=96.92 E-value=0.0021 Score=68.75 Aligned_cols=88 Identities=18% Similarity=0.319 Sum_probs=64.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCc---cc----ccCceecCCHHHHhccCCEEEEccCCChhh
Q 006758 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKV---TF----PSAARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fGm-~V~~~dr~~~~~~~---~~----~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
-++|||||.|.+|+..++.+.. .++ .|.+||++...... .+ ...+..+.++++++. +|+|++|.|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 4689999999999999998874 455 68889998643321 11 111334678999997 99999999864
Q ss_pred HhhccHHHHhccCCCcEEEEcCCC
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
..+|..+. +|+|+.+..+|.-
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs~ 225 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGAD 225 (326)
T ss_pred CcEecHHH---cCCCCEEEecCCC
Confidence 46777654 5899999999853
No 198
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.88 E-value=0.0071 Score=71.63 Aligned_cols=117 Identities=9% Similarity=-0.008 Sum_probs=84.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------c-----c--------ccCceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------T-----F--------PSAARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~-----~--------~~g~~~~~sL~eLL~~ 218 (632)
++|+|||.|.||..||..+...|++|+.+|++....+. . . ........+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 57999999999999999999999999999988643220 0 0 00122234554 5799
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG 283 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~ 283 (632)
||+|+=++|-.-+.+.-+-++.=..++++++|....+ -++...|.+++.. .-..+++--|.+
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~-p~r~ig~Hff~P 476 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTS--ALPIKDIAAVSSR-PEKVIGMHYFSP 476 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCC-ccceEEEeccCC
Confidence 9999999999999888888888888999998874433 2455667666643 333456666653
No 199
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.87 E-value=0.0011 Score=59.20 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=57.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.|+|++|.|||.|.+|..-++.|...|++|+++++.....+.... .....+++.+..+|+|+++.+... +++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~---~~~~~~~~~l~~~~lV~~at~d~~-----~n~ 75 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQ---LIRREFEEDLDGADLVFAATDDPE-----LNE 75 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCE---EEESS-GGGCTTESEEEE-SS-HH-----HHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHH---HHhhhHHHHHhhheEEEecCCCHH-----HHH
Confidence 589999999999999999999999999999999988410010111 112344566888999998876422 344
Q ss_pred HHHhccCCCcEEEEcC
Q 006758 239 ECLQHIKPGAFLVNTG 254 (632)
Q Consensus 239 ~~L~~MK~GAvLINvg 254 (632)
......+.--++||+.
T Consensus 76 ~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 76 AIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHTTSEEEET
T ss_pred HHHHHHhhCCEEEEEC
Confidence 4555555555778874
No 200
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=96.84 E-value=0.011 Score=69.67 Aligned_cols=117 Identities=10% Similarity=-0.023 Sum_probs=82.5
Q ss_pred cEEEEEeCChhhHHHHHHHh-hCCCEEEEECCCCCCCCcc-----------c-------------ccCceecCCHHHHhc
Q 006758 163 LVLGIVGRSASARALATRSL-SFKMSVLYFDVPEGKGKVT-----------F-------------PSAARRMDTLNDLLA 217 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lk-afGm~V~~~dr~~~~~~~~-----------~-------------~~g~~~~~sL~eLL~ 217 (632)
++|+|||.|.||..+|..+. ..|++|+.||++....... . ........++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 57999999999999999887 4899999999886421100 0 0012233455 4678
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG 283 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~ 283 (632)
+||+|+=++|-.-+.+.-+-++.=..++++++|....++ +....|.+++.. .-..+++--|.+
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~HffnP 446 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFSP 446 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCCc
Confidence 999999999999998888878888888999988765543 444566666642 233356665543
No 201
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.84 E-value=0.0034 Score=67.85 Aligned_cols=76 Identities=14% Similarity=0.116 Sum_probs=54.4
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCceecCCHH----HHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRMDTLN----DLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~~~sL~----eLL~~ADVV~l~lPlT~~T~ 233 (632)
.+.|++|.|||.|.||..+|+.|...|+ +|++.+|+.... .+ ..+. +++..+||||.+..-|....
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~--~~-------~~~~~~~~~~~~~~DvVIs~t~~Tas~~ 241 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL--PY-------RTVVREELSFQDPYDVIFFGSSESAYAF 241 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc--ch-------hhhhhhhhhcccCCCEEEEcCCcCCCCC
Confidence 5899999999999999999999999996 699999987421 11 2222 45678999998743333333
Q ss_pred hhccHHHHhc
Q 006758 234 QIINAECLQH 243 (632)
Q Consensus 234 ~lI~~~~L~~ 243 (632)
.++..+.+..
T Consensus 242 p~i~~~~~~~ 251 (338)
T PRK00676 242 PHLSWESLAD 251 (338)
T ss_pred ceeeHHHHhh
Confidence 4555555443
No 202
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.83 E-value=0.0048 Score=65.63 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=71.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-ccc-----------ccCceecCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-VTF-----------PSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~-~~~-----------~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
++|+|||.|.+|..+|..+...|. +|+.+|....... ... ........++++ +++||+|+++++..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 479999999999999999988775 8999998543211 000 001122356766 78999999999842
Q ss_pred h-----------hhHhhcc--HHHHhccCCCcEEEEcCCChhhcHHHHHHH--HHcCCcceEE--ee
Q 006758 230 D-----------ETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQL--LIDGTLAGCA--LD 279 (632)
Q Consensus 230 ~-----------~T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~AL~~A--L~sg~I~GAa--LD 279 (632)
. .+..++- .+.+....+++++|+++.--=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 2 1222221 123444457899999977433333334444 3344455554 77
No 203
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.83 E-value=0.0014 Score=72.37 Aligned_cols=94 Identities=13% Similarity=0.156 Sum_probs=65.2
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---cccccCceecCCHHHHhccCCEEEEccCCChhhHh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
.|+++++.|||+|.||.-+|+.|...|. +|++.+|+..... ..+...+..++.+.+.+..+||||.+... ...
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa---~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSA---PHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCC---Ccc
Confidence 4899999999999999999999999995 8999999875433 12222234456778889999999998543 334
Q ss_pred hccHHHHhccC---CCcEEEEcCC
Q 006758 235 IINAECLQHIK---PGAFLVNTGS 255 (632)
Q Consensus 235 lI~~~~L~~MK---~GAvLINvgR 255 (632)
+|..+.+...- +.-++|+++=
T Consensus 252 ii~~~~ve~a~~~r~~~livDiav 275 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAV 275 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecC
Confidence 55544433221 1135555543
No 204
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.83 E-value=0.0017 Score=71.94 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=58.0
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc---ccc-cCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV---TFP-SAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~---~~~-~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
.+.|++|.|||.|.||+.+|+.|...|+ +|++++|+...... .+. .....++++.+++..+|+||+|.+.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 5789999999999999999999999996 79999998643321 111 11223456778899999999998752 3
Q ss_pred hhccHHH
Q 006758 234 QIINAEC 240 (632)
Q Consensus 234 ~lI~~~~ 240 (632)
.+|..+.
T Consensus 255 ~vi~~~~ 261 (414)
T PRK13940 255 YIVTCKY 261 (414)
T ss_pred eeECHHH
Confidence 4555443
No 205
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.82 E-value=0.0043 Score=62.28 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=47.9
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHh
Q 006758 164 VLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (632)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~ 242 (632)
+|+|||- |.+|+-++..++..|+.|. +.+||+|++|+|.. .+..++ .
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~-~~~~~i-----~ 49 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPID-AALNYI-----E 49 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHH-HHHHHH-----H
Confidence 7899998 9999999999999999985 35899999999963 333333 3
Q ss_pred ccCCCcEEEEcCCChh
Q 006758 243 HIKPGAFLVNTGSSQL 258 (632)
Q Consensus 243 ~MK~GAvLINvgRG~i 258 (632)
.+. .+|+++++-+-
T Consensus 50 ~~~--~~v~Dv~SvK~ 63 (197)
T PRK06444 50 SYD--NNFVEISSVKW 63 (197)
T ss_pred HhC--CeEEeccccCH
Confidence 333 37999998554
No 206
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.82 E-value=0.0067 Score=62.02 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=70.2
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCCC----CC---C------------cccccCceecCCHHHH-hc
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPEG----KG---K------------VTFPSAARRMDTLNDL-LA 217 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~-dr~~~----~~---~------------~~~~~g~~~~~sL~eL-L~ 217 (632)
+++|++|.|.|+|++|+.+|+.|..+|++|+++ |.... .+ . ..++ ....+ +.+++ -.
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~-~~~~~-~~~~i~~~ 105 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFP-GAERI-TNEELLEL 105 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCC-Cceec-CCccceee
Confidence 479999999999999999999999999999955 43210 00 0 0000 01111 22222 23
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+|||++-|.+ .+.|+.+...+++ -.+++-.+-+.+- ....+.|.++.|.
T Consensus 106 ~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~ 154 (227)
T cd01076 106 DCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL 154 (227)
T ss_pred cccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence 6889877765 3678888888886 5677777777774 4455777777665
No 207
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.79 E-value=0.011 Score=61.51 Aligned_cols=155 Identities=13% Similarity=0.074 Sum_probs=93.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECC-CC----CC-----------------CC--ccccc---CceecCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV-PE----GK-----------------GK--VTFPS---AARRMDT 211 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr-~~----~~-----------------~~--~~~~~---g~~~~~s 211 (632)
++.|++|.|.|+|++|+.+|+.|..+|++|+++.. +. .. .. ..+.. +.... +
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~ 113 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-E 113 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-C
Confidence 47999999999999999999999999999995532 11 00 00 00110 12222 3
Q ss_pred HHHH-hccCCEEEEccCCChhhHhhccHHHHhccC--CCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC--CCC
Q 006758 212 LNDL-LAASDVISLHCAVTDETIQIINAECLQHIK--PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQW 286 (632)
Q Consensus 212 L~eL-L~~ADVV~l~lPlT~~T~~lI~~~~L~~MK--~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~--P~~ 286 (632)
.+++ -..|||++-| .+.+.|+++....++ +-.+++-.+-+++-+ +-.+.|.++.|. .+=|+.-+ -.-
T Consensus 114 ~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~-vvPD~laNaGGVi 185 (254)
T cd05313 114 GKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL-FAPGKAANAGGVA 185 (254)
T ss_pred CcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE-EECchhhcCCCee
Confidence 3343 3469999777 457889999888885 456888888888865 344677777665 34454332 000
Q ss_pred CCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHH
Q 006758 287 MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326 (632)
Q Consensus 287 ~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL 326 (632)
. +.+--..| .-|..|.-++...++...+.+...+.+
T Consensus 186 v-s~~E~~qn---~~~~~w~~e~V~~~l~~~m~~~~~~v~ 221 (254)
T cd05313 186 V-SGLEMSQN---SQRLSWTAEEVDAKLKDIMKNIHDACA 221 (254)
T ss_pred e-eHHHhhcc---cccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000111 223445556676666666666655544
No 208
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.78 E-value=0.012 Score=69.45 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=82.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------c-------------ccCceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------F-------------PSAARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-----------~-------------~~g~~~~~sL~eLL~~ 218 (632)
++|+|||.|.||..||..+...|++|+.+|++....+.. . ........++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 579999999999999999999999999999886432100 0 0011223455 44799
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
||+|+=++|-.-+.+.=+-++.=..++|+++|-...++ ++..+|..++.. .-..+++=-|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff~ 453 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFFN 453 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecCC
Confidence 99999999998888887878888889999998765553 445566666642 22334444443
No 209
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0043 Score=66.90 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=69.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCC-------cccccCceecCCHHHHhccCCEEEEccCCChhh
Q 006758 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGK-------VTFPSAARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fGm-~V~~~dr~~~~~~-------~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
-+++||||.|..+..-++.++. |+. +|.+|+|++...+ ..+...+....++++++..||+|+.+.|.+.
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 4679999999999999998874 566 8999999875443 1111124567899999999999999999765
Q ss_pred HhhccHHHHhccCCCcEEEEcCC
Q 006758 233 IQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgR 255 (632)
.+|..+. +|||+.|..+|.
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 7787755 569999999995
No 210
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.73 E-value=0.0074 Score=55.39 Aligned_cols=100 Identities=10% Similarity=0.106 Sum_probs=68.7
Q ss_pred cEEEEEe----CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVG----RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIG----lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
|+|+||| -+..|..+.+.|+..|++|+.+++..... .|...+.+|.|.-...|++++++|- +.+..++.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v~- 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIVD- 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHHH-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCH-HHHHHHHH-
Confidence 5799999 78999999999999999999999887332 3566678999854789999999995 33445543
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
.+..+..+.+++..+ ..++++.+.+++..+.
T Consensus 74 -~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 74 -EAAALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred -HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 334456778999988 6677788888877665
No 211
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.73 E-value=0.0037 Score=56.84 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=55.1
Q ss_pred EEEEEe-CChhhHHHHHHHhhC-CCEEEEE-CCCCCCCCcccccC--c--eecCCH--HHH-hccCCEEEEccCCChhhH
Q 006758 164 VLGIVG-RSASARALATRSLSF-KMSVLYF-DVPEGKGKVTFPSA--A--RRMDTL--NDL-LAASDVISLHCAVTDETI 233 (632)
Q Consensus 164 tVGIIG-lG~IG~~vA~~Lkaf-Gm~V~~~-dr~~~~~~~~~~~g--~--~~~~sL--~eL-L~~ADVV~l~lPlT~~T~ 233 (632)
++||+| .|.+|..++..+... +++|.++ ++............ . .....+ +++ ..++|+|++|+|.....
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~- 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSK- 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHH-
Confidence 489999 599999999998875 7877777 43322221110000 1 000111 111 25899999999975433
Q ss_pred hhccHHHHhccCCCcEEEEcCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgR 255 (632)
.++. ..+..+++|.++|+++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 3222 23456789999999985
No 212
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.72 E-value=0.0027 Score=68.72 Aligned_cols=97 Identities=13% Similarity=0.193 Sum_probs=70.2
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhh-CCC-EEEEECCCCCCCCccc-ccCceecCCHHHHhccCCEEEEccCCChhhHh
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLS-FKM-SVLYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~Lka-fGm-~V~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
.+.|++|.|+|. |.||+.+++.|.. .|. +|+.++|+........ ........++++.+.++|+|+.+.-.. ..
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~---~~ 228 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP---KG 228 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC---cC
Confidence 479999999998 8999999999974 564 8999998754322100 111122346889999999998765432 24
Q ss_pred -hccHHHHhccCCCcEEEEcCCChhhcH
Q 006758 235 -IINAECLQHIKPGAFLVNTGSSQLLDD 261 (632)
Q Consensus 235 -lI~~~~L~~MK~GAvLINvgRG~iVDe 261 (632)
+|+.+. |+++.++|++|+-.=||.
T Consensus 229 ~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 229 VEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 477764 479999999999877765
No 213
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0029 Score=69.54 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=48.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCcc----------cccCceecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVT----------FPSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~----------~~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|.|||.|.||+.+|..|...| .+|++.||+....... ....+.....|.+++++.|+|+.++|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 57899999999999999999998 8999999995433211 111122334567788888888888874
No 214
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.64 E-value=0.038 Score=56.22 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=70.0
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCC----------CCCCccccc-Ccee-----cCCHHHHh-ccCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPE----------GKGKVTFPS-AARR-----MDTLNDLL-AASD 220 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~-dr~~----------~~~~~~~~~-g~~~-----~~sL~eLL-~~AD 220 (632)
+|.|++|.|.|+|++|+.+|+.|...|++|+++ |.+. ......... +... ..+-++++ ..||
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 99 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD 99 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence 478999999999999999999999999966654 5543 100000000 0000 01112332 3689
Q ss_pred EEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 221 VISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 221 VV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
|++-|.+- ++|+.+....++ -.+++--+.+++-+ .-.+.|.+..+.
T Consensus 100 VlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~ 145 (217)
T cd05211 100 IFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV 145 (217)
T ss_pred EEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 99888764 588888888887 66778888888765 334556655543
No 215
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.64 E-value=0.0057 Score=63.19 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=74.8
Q ss_pred EEEEeC-ChhhHHHHHHHhhCC----CEEEEECCCCCCCC----------ccc-ccCceecCCHHHHhccCCEEEEccCC
Q 006758 165 LGIVGR-SASARALATRSLSFK----MSVLYFDVPEGKGK----------VTF-PSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 165 VGIIGl-G~IG~~vA~~LkafG----m~V~~~dr~~~~~~----------~~~-~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
|+|||. |.+|..+|..+...| .+|..||......+ ... .......+++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999988777 69999998764332 001 11222345678999999999996522
Q ss_pred Ch-----------hhHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH--HHHH--HHcCCcceEE-eecC
Q 006758 229 TD-----------ETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA--VKQL--LIDGTLAGCA-LDGA 281 (632)
Q Consensus 229 T~-----------~T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A--L~~A--L~sg~I~GAa-LDVf 281 (632)
.. .+..++- .+.+....|.+++||++ ..+|.-+ +.+. +...++.|.+ ||..
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~~ 149 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDPI 149 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence 11 1222221 23444556899999996 4454443 4444 3456788888 8863
No 216
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.63 E-value=0.0048 Score=65.99 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=67.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCc------ccccCceecCCHHHHhccCCEEEEccCCChhh
Q 006758 161 RGLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKV------TFPSAARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fGm-~V~~~dr~~~~~~~------~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
.-++++|||.|..|+.-++.+.. +.. +|.+|+|+....+. .....+..+++.++++..||||+++.|. +
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~ 203 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---R 203 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---C
Confidence 35789999999999999887764 344 89999999754321 0011233357899999999999999774 4
Q ss_pred HhhccHHHHhccCCCcEEEEcCCC
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
..+|..+ .+|||+.++.+|.-
T Consensus 204 ~P~~~~~---~l~~G~hi~~iGs~ 224 (315)
T PRK06823 204 EPLLQAE---DIQPGTHITAVGAD 224 (315)
T ss_pred CceeCHH---HcCCCcEEEecCCC
Confidence 5778765 46899999999853
No 217
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.61 E-value=0.0018 Score=72.81 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=50.5
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHH--hccCCEEEEccCCC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDL--LAASDVISLHCAVT 229 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eL--L~~ADVV~l~lPlT 229 (632)
..+.+++++|+|.|.+|++++..+...|++|.+++++....+...........+++++ +..+|+|++|+|..
T Consensus 328 ~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 328 IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCC
Confidence 3568999999999999999999999999999999987533221100000011122322 56899999999974
No 218
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.61 E-value=0.025 Score=63.33 Aligned_cols=160 Identities=14% Similarity=0.050 Sum_probs=100.4
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEE--------ECCCCCCCCc--------------------ccccCceecC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLY--------FDVPEGKGKV--------------------TFPSAARRMD 210 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~--------~dr~~~~~~~--------------------~~~~g~~~~~ 210 (632)
+|.|+||.|=|+|++|..+|+.|..+|++|++ ||+..-.... .++ ++..+
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~-ga~~i- 302 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFP-GSTFF- 302 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCC-CCEEc-
Confidence 58999999999999999999999999999999 7755322110 111 22222
Q ss_pred CHHHHh-ccCCEEEEccCCChhhHhhccHHHHhccC--CCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCC-CC
Q 006758 211 TLNDLL-AASDVISLHCAVTDETIQIINAECLQHIK--PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP-QW 286 (632)
Q Consensus 211 sL~eLL-~~ADVV~l~lPlT~~T~~lI~~~~L~~MK--~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P-~~ 286 (632)
+-++++ ..|||++-|. +.+.|+.+....+. .-.+++--+.+ ++..+|- +.|.+..|. .+=|..-+- --
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~-~vPD~~aNAGGV 374 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL-FAPGKAVNAGGV 374 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE-EeCcceecCCCe
Confidence 334443 3589996663 67889988888882 35577888888 4545443 667777665 344544320 00
Q ss_pred CCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCC
Q 006758 287 MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVI 331 (632)
Q Consensus 287 ~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~ 331 (632)
.-+.+ .-+-=.-|..|..++...++.+.+.+.+.+.+..++.
T Consensus 375 ivs~~---E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v~~~~~~ 416 (445)
T PRK14030 375 ATSGL---EMSQNAMHLSWSAEEVDEKLHQIMSGIHEQCVKYGKE 416 (445)
T ss_pred eeehh---hhhccccccCcCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00000 0111124566777778788877777777776655543
No 219
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.54 E-value=0.0078 Score=63.09 Aligned_cols=102 Identities=13% Similarity=0.089 Sum_probs=64.7
Q ss_pred cEEEEEeCChhhHHHHHHHhh---CCCEEEE-ECCCCCCCCcccccCceecCCHHHH-hccCCEEEEccCCChhhHhhcc
Q 006758 163 LVLGIVGRSASARALATRSLS---FKMSVLY-FDVPEGKGKVTFPSAARRMDTLNDL-LAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka---fGm~V~~-~dr~~~~~~~~~~~g~~~~~sL~eL-L~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.+|||||+|.||+.+++.+.. .++++.+ |++...... .+......+.+++++ ....|+|+=|..- + .+-
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~DlVVE~A~~--~---av~ 76 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPP-ALAGRVALLDGLPGLLAWRPDLVVEAAGQ--Q---AIA 76 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHH-HhhccCcccCCHHHHhhcCCCEEEECCCH--H---HHH
Confidence 589999999999999999874 2365544 455432211 222224456789997 5789999999774 2 222
Q ss_pred HHHHhccCCCcEEEEcCCChhhc---HHHHHHHHHc
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLD---DCAVKQLLID 270 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVD---e~AL~~AL~s 270 (632)
+--..-|+.|.-+|=.+=|.+.| .+.|.++.+.
T Consensus 77 e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 77 EHAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 22233345676777777788776 3445555444
No 220
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.51 E-value=0.0051 Score=67.48 Aligned_cols=93 Identities=17% Similarity=0.365 Sum_probs=68.6
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CC-C-EEEEECCCCCCCC-------ccccc--CceecCCHHHHhccCCEEEEccCCC
Q 006758 162 GLVLGIVGRSASARALATRSLS-FK-M-SVLYFDVPEGKGK-------VTFPS--AARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fG-m-~V~~~dr~~~~~~-------~~~~~--g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
-+++||||.|..|+.-++.+.. +. . +|.+|+|+..... ..+.. .+..+.++++++.+||||+++.+.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4689999999999999988776 42 4 8999999874332 11111 1334688999999999999998754
Q ss_pred h---hhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 230 D---ETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 230 ~---~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
. .+..+|..+ .+|||+.++.+|.-+
T Consensus 235 ~~~~s~~Pv~~~~---~lkpG~hv~~ig~~e 262 (379)
T PRK06199 235 TGDPSTYPYVKRE---WVKPGAFLLMPAACR 262 (379)
T ss_pred CCCCCcCcEecHH---HcCCCcEEecCCccc
Confidence 3 345778765 467999888877644
No 221
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.49 E-value=0.0057 Score=65.81 Aligned_cols=86 Identities=16% Similarity=0.102 Sum_probs=60.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEE-ECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVLY-FDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~-~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
.+|||||+|+||+.+++.+... ++++.+ ++++..... ....+.....+.++++.+.|+|++|.|.... + ...
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~-~~~~~v~~~~d~~e~l~~iDVViIctPs~th---~--~~~ 77 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETL-DTETPVYAVADDEKHLDDVDVLILCMGSATD---I--PEQ 77 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHH-hhcCCccccCCHHHhccCCCEEEEcCCCccC---H--HHH
Confidence 5899999999999999999866 898876 587742111 1112333445778888999999999986433 1 334
Q ss_pred HhccCCCcEEEEcC
Q 006758 241 LQHIKPGAFLVNTG 254 (632)
Q Consensus 241 L~~MK~GAvLINvg 254 (632)
...|+.|.-+|+..
T Consensus 78 ~~~L~aG~NVV~s~ 91 (324)
T TIGR01921 78 APYFAQFANTVDSF 91 (324)
T ss_pred HHHHHcCCCEEECC
Confidence 45566777777774
No 222
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.48 E-value=0.0066 Score=65.08 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=63.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CC-CEEEEECCCCCCCCcc-------cccCceecCCHHHHhccCCEEEEccCCChh
Q 006758 161 RGLVLGIVGRSASARALATRSLS-FK-MSVLYFDVPEGKGKVT-------FPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG-m~V~~~dr~~~~~~~~-------~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
..++++|||.|.+|+..+..+.. .+ -+|.+|+|+....+.. +...+..+.++++++.+||+|+++.|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 45789999999999998888874 55 4899999986433210 1111233578999999999999998864
Q ss_pred hHhhccHHHHhccCCCcEEEEcC
Q 006758 232 TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvg 254 (632)
..+|..+. +++|+.++-++
T Consensus 209 -~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred -CcEecHHH---cCCCceEEeeC
Confidence 35676644 57888776654
No 223
>PLN02477 glutamate dehydrogenase
Probab=96.47 E-value=0.028 Score=62.47 Aligned_cols=111 Identities=19% Similarity=0.208 Sum_probs=75.1
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCCC----CCC---------------cccccCceecCCHHH-Hhc
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPEG----KGK---------------VTFPSAARRMDTLND-LLA 217 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~-dr~~~----~~~---------------~~~~~g~~~~~sL~e-LL~ 217 (632)
+++|++|.|.|+|++|+.+|+.|...|++|+++ |.+.. .+. ..++ +...+ +.++ +..
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~-~a~~i-~~~e~l~~ 280 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFP-GGDPI-DPDDILVE 280 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccc-cceEe-cCccceec
Confidence 589999999999999999999999999999954 54310 000 0011 11112 2233 344
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.|||++-|. ..+.|+++....++ -.+++-.+.+.+ ..+-.+.|.+..|. .+=|+
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~--t~ea~~~L~~rGI~-~~PD~ 334 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT--DPEADEILRKKGVV-VLPDI 334 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC--CHHHHHHHHHCCcE-EEChH
Confidence 799997664 45789998888885 668899999998 33344777877765 33444
No 224
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.39 E-value=0.0058 Score=61.51 Aligned_cols=91 Identities=12% Similarity=0.023 Sum_probs=56.2
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-ccC-cee--cCCHHHHhccCCEEEEccCCChhhH
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSA-ARR--MDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-~~g-~~~--~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
-+|.|++|.|||.|.+|..-++.|..+|++|.++++........+ ..+ +.. -.--.+.+..+|+|+.+....+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~--- 81 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE--- 81 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH---
Confidence 468999999999999999999999999999999998754221011 000 110 0001344567777766644321
Q ss_pred hhccHHHHhccCCCcEEEEc
Q 006758 234 QIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINv 253 (632)
+|.......+.-.++||+
T Consensus 82 --ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 82 --LNRRVAHAARARGVPVNV 99 (205)
T ss_pred --HHHHHHHHHHHcCCEEEE
Confidence 233344444444566664
No 225
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.38 E-value=0.019 Score=59.49 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=47.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-CCEEEE-ECCCCCCCCcccccCceecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVGR-SASARALATRSLSF-KMSVLY-FDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-Gm~V~~-~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
.+|+|+|+ |.||+.+++.+... ++++.+ +|+...........++..+.++++++..+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 47999998 99999999998864 788665 6766533221111233346789999989999998875
No 226
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.38 E-value=0.016 Score=61.96 Aligned_cols=108 Identities=10% Similarity=-0.022 Sum_probs=74.2
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCC------------------cccc-------------cCceecCC--HHHHhccC
Q 006758 173 SARALATRSLSFKMSVLYFDVPEGKGK------------------VTFP-------------SAARRMDT--LNDLLAAS 219 (632)
Q Consensus 173 IG~~vA~~LkafGm~V~~~dr~~~~~~------------------~~~~-------------~g~~~~~s--L~eLL~~A 219 (632)
||..||..+...|++|+.||++....+ .... .......+ +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 689999999999999999999874210 0000 01111222 56788999
Q ss_pred CEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC
Q 006758 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG 283 (632)
Q Consensus 220 DVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~ 283 (632)
|+|+-++|-..+.+.-+-.+..+.++++++|..+.+ .+....|.+.+.. .=...++-.|.+
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS--~~~~~~la~~~~~-p~r~~g~Hf~~P 141 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTS--TFLVTDLQRHVAH-PERFLNAHWLNP 141 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccc--cCCHHHHHhhcCC-cccEEEEecCCc
Confidence 999999999999998888888889999999955444 4556667766642 222344444443
No 227
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.37 E-value=0.0085 Score=59.91 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=35.5
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|.+++|.|||+|.+|..+|+.|...|+ ++.++|+..
T Consensus 16 q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 16 QQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 356899999999999999999999999998 899999873
No 228
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.36 E-value=0.015 Score=62.10 Aligned_cols=95 Identities=12% Similarity=0.168 Sum_probs=61.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------cccccCceecCCHHHHhccCCEEEEccCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
.+++|+|||.|.+|..+|..+...|. ++..+|.+..... ..+.....-..+-.+.+++||+|+++.-..
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~ 84 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP 84 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence 57899999999999999999998887 8999998754322 001011111122345689999999976542
Q ss_pred hh-----------hHhhcc--HHHHhccCCCcEEEEcCC
Q 006758 230 DE-----------TIQIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 230 ~~-----------T~~lI~--~~~L~~MK~GAvLINvgR 255 (632)
.. +..++. ...+....|.+++|+++-
T Consensus 85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 21 122221 123333447899999973
No 229
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.30 E-value=0.0081 Score=64.89 Aligned_cols=39 Identities=23% Similarity=0.114 Sum_probs=35.7
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
...|++++|.|||.|.+|..+|..|...|. ++.++|+..
T Consensus 19 Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 19 QRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred HHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 467999999999999999999999999998 899999874
No 230
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.28 E-value=0.011 Score=62.91 Aligned_cols=89 Identities=16% Similarity=0.155 Sum_probs=66.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCc---c----cccCceecCCHHHHhccCCEEEEccCCChhh
Q 006758 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKV---T----FPSAARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fGm-~V~~~dr~~~~~~~---~----~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
-+++||||.|..|..-++.+.. +.. +|.+|+|+..+... . +...+..+.++++++.+||||+++.|. +
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s---~ 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS---D 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC---C
Confidence 4789999999999988887764 455 79999998754321 0 111234467899999999999998875 4
Q ss_pred HhhccHHHHhccCCCcEEEEcCCC
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
..+|..+ .+|||+.++-+|..
T Consensus 194 ~P~~~~~---~l~pg~hV~aiGs~ 214 (301)
T PRK06407 194 TPIFNRK---YLGDEYHVNLAGSN 214 (301)
T ss_pred CcEecHH---HcCCCceEEecCCC
Confidence 4778765 45799887777753
No 231
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.25 E-value=0.019 Score=55.52 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=66.7
Q ss_pred cCcEEEEEe--CChhhHHHHHHHhhCCCEEEEECCCCC--CCCcc-c----------ccCceecCCHHHHhccCCEEEEc
Q 006758 161 RGLVLGIVG--RSASARALATRSLSFKMSVLYFDVPEG--KGKVT-F----------PSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 161 ~GktVGIIG--lG~IG~~vA~~LkafGm~V~~~dr~~~--~~~~~-~----------~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
.|++|++|| .+++..+++..+..||++|.++.|..- ..... . ........++++.++++|||..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 489999999999999999999998762 22100 0 11234458999999999999886
Q ss_pred cCC----Chh-------hHhhccHHHHhccCCCcEEEEcC
Q 006758 226 CAV----TDE-------TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 226 lPl----T~~-------T~~lI~~~~L~~MK~GAvLINvg 254 (632)
.-- .+. ..-.|+.+.++.+|++++|..+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 554 111 11336888888888888888775
No 232
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.24 E-value=0.019 Score=60.48 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=44.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc-------c-cccC----ceecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV-------T-FPSA----ARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~-------~-~~~g----~~~~~sL~eLL~~ADVV~l~lP 227 (632)
++|+|||.|.+|..+|..+...|. +|..+|+....... . .... .....+. +.+++||+|++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 589999999999999999987664 99999986543220 0 0000 1112345 45799999999863
No 233
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.23 E-value=0.0043 Score=55.51 Aligned_cols=106 Identities=16% Similarity=0.163 Sum_probs=66.3
Q ss_pred EEEEEeCChhhHHHHHHHhhC--CCEEE-EECCCCCCCCc-ccccCceecCCHHHHhc--cCCEEEEccCCChhhHhhcc
Q 006758 164 VLGIVGRSASARALATRSLSF--KMSVL-YFDVPEGKGKV-TFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lkaf--Gm~V~-~~dr~~~~~~~-~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~~T~~lI~ 237 (632)
+|||||+|.+|+.....+... +++|. ++|++...... ....+...+.++++++. ..|+|+++.|.......+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~-- 79 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA-- 79 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH--
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH--
Confidence 699999999999999888765 56765 67887643321 11234456789999998 789999999964332211
Q ss_pred HHHHhccCCCcEEEEcC-CChhhcHHHHHHHHHcCCc
Q 006758 238 AECLQHIKPGAFLVNTG-SSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvg-RG~iVDe~AL~~AL~sg~I 273 (632)
...++.=+ .+++.-= --.+-+..+|.++.++...
T Consensus 80 ~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 80 KKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKGV 114 (120)
T ss_dssp HHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhCC
Confidence 22332222 5555531 1234455566666665443
No 234
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.23 E-value=0.01 Score=64.38 Aligned_cols=90 Identities=12% Similarity=0.243 Sum_probs=64.4
Q ss_pred CcEEEEEeCChhhHHHHHHHh-hCCC-EEEEECCCCCCCCc---cc---ccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 162 GLVLGIVGRSASARALATRSL-SFKM-SVLYFDVPEGKGKV---TF---PSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lk-afGm-~V~~~dr~~~~~~~---~~---~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
-++++|||.|..|..-++.+. -+.. +|.+|+|+....+. .. ...+..++++++++.+||||+++.|.+ ++.
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 468999999999988877655 4555 89999998754321 00 112334678999999999999998742 222
Q ss_pred hhccHHHHhccCCCcEEEEcCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgR 255 (632)
-+|..+ .+|||+.++-+|.
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred ceecHH---HcCCCcEEEecCC
Confidence 567664 4689999888775
No 235
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.23 E-value=0.028 Score=59.53 Aligned_cols=98 Identities=11% Similarity=0.193 Sum_probs=63.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCc---cc-------ccCc-eecCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKV---TF-------PSAA-RRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~~---~~-------~~g~-~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
++|+|||.|.+|..+|..|...|+ +|.++|++....+. .+ .... ....+. +.+.+||+|+++....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCC
Confidence 479999999999999999998884 89999997643320 00 0111 112333 4578999999998763
Q ss_pred hh-----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 230 DE-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 230 ~~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
.. +..+|- ...+....|.+++|+++ ..+|.-+
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~~~ 124 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDVIT 124 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHHHH
Confidence 21 222221 23455567889999997 4455443
No 236
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.20 E-value=0.017 Score=60.22 Aligned_cols=106 Identities=13% Similarity=0.107 Sum_probs=61.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEEE-CCCCCCC--CcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVLYF-DVPEGKG--KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~~-dr~~~~~--~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.+|||||+|.||+.+++.+... ++++.++ ++..... ...+..+...+.+++++-...|+|+.|.|.... . +
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence 4799999999999999998865 5665443 3322111 111112344567888885569999999985322 1 2
Q ss_pred HHHhccCCCcEEEEcCCChhhcH---HHHHHHHHcCCc
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDD---CAVKQLLIDGTL 273 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe---~AL~~AL~sg~I 273 (632)
-....|+.|.-++-.+-|.+.|. +.|.++.+++..
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~ 114 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA 114 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence 22233444444444444444443 445666555443
No 237
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.19 E-value=0.052 Score=60.88 Aligned_cols=114 Identities=10% Similarity=0.047 Sum_probs=75.7
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCCC----CCC----------------ccccc--CceecCCHHHH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPEG----KGK----------------VTFPS--AARRMDTLNDL 215 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~-dr~~~----~~~----------------~~~~~--g~~~~~sL~eL 215 (632)
++.|++|.|.|+|++|+.+|+.|..+|++|+++ |.+.. .+. ..++. +.. ..+.+++
T Consensus 229 ~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~-~i~~~~i 307 (445)
T PRK09414 229 SFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE-YLEGGSP 307 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe-ecCCccc
Confidence 589999999999999999999999999999998 53210 000 01110 111 1234444
Q ss_pred hc-cCCEEEEccCCChhhHhhccHHHHhccC--CCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC
Q 006758 216 LA-ASDVISLHCAVTDETIQIINAECLQHIK--PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (632)
Q Consensus 216 L~-~ADVV~l~lPlT~~T~~lI~~~~L~~MK--~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf 281 (632)
+. .|||++-|.. .+.|+.+....++ .-.+++-.+.+.+ ..+-.+.|.++.|. .+=|+.
T Consensus 308 ~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~-~vPD~l 368 (445)
T PRK09414 308 WSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVL-FAPGKA 368 (445)
T ss_pred cccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcE-EECchh
Confidence 44 6999987764 4778888777773 3558888888888 33345677777665 344443
No 238
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.16 E-value=0.0071 Score=54.41 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=55.7
Q ss_pred hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---ccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCc
Q 006758 172 ASARALATRSLSFKMSVLYFDVPEGKGKVTF---PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (632)
Q Consensus 172 ~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GA 248 (632)
.-+..|++.|+..|++|.+|||......... ..+.....++++.+..+|+|+++.+. ++-..+--......|+++.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~~~~~~~~~~~~~ 95 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDH-DEFRELDWEEIAKLMRKPP 95 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSE
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecC-HHHhccCHHHHHHhcCCCC
Confidence 3468899999999999999999875433111 12455567899999999999999986 3333332344556788899
Q ss_pred EEEEc
Q 006758 249 FLVNT 253 (632)
Q Consensus 249 vLINv 253 (632)
+||++
T Consensus 96 ~iiD~ 100 (106)
T PF03720_consen 96 VIIDG 100 (106)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99997
No 239
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.10 E-value=0.012 Score=53.90 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=53.0
Q ss_pred EEEEEe-CChhhHHHHHHHhh-CCCEEEEE-CCCCCCCC---cccc--cCc---eecCCHHHHhccCCEEEEccCCChhh
Q 006758 164 VLGIVG-RSASARALATRSLS-FKMSVLYF-DVPEGKGK---VTFP--SAA---RRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 164 tVGIIG-lG~IG~~vA~~Lka-fGm~V~~~-dr~~~~~~---~~~~--~g~---~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
+||||| .|.+|+.+.++|.. ..+++..+ ++....+. ..++ .+. ...+.-.+.+..+|+|++|+|....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~- 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS- 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence 689999 99999999999986 46665544 44442332 1111 001 1111123445999999999985322
Q ss_pred HhhccHHHHhccCCCcEEEEcCCCh
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
..+. ... ++.|..+|+.+..-
T Consensus 80 ~~~~-~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 80 KELA-PKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp HHHH-HHH---HHTTSEEEESSSTT
T ss_pred HHHH-HHH---hhCCcEEEeCCHHH
Confidence 2221 112 57899999987643
No 240
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.10 E-value=0.014 Score=64.18 Aligned_cols=109 Identities=10% Similarity=0.054 Sum_probs=65.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH--------
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI-------- 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~-------- 233 (632)
.++|.|||+|.+|.++|+.|+..|++|.++|++..................+.+..++|+|+.+.+..+...
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 468999999999999999999999999999976543221000000111233345577999998876654311
Q ss_pred --hhccHHHH--hc--c-CCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 234 --QIINAECL--QH--I-KPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 234 --~lI~~~~L--~~--M-K~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
.++....+ .. + ..-.+-|--+-|+.--..-|...|..
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 12222121 11 1 11235555556777666666666664
No 241
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.05 E-value=0.035 Score=57.52 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=61.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~ 242 (632)
-++-|+|.|.+++.+|+.++.+|++|.++|+++..... ..++.++.+....| .+.+.
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~-------------~~~~~~~~~~~~~~----------~~~~~ 157 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE-------------DLPDGVATLVTDEP----------EAEVA 157 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc-------------cCCCCceEEecCCH----------HHHHh
Confidence 46899999999999999999999999999977531110 11123443322222 12223
Q ss_pred ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 243 ~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
.+.+.+.+|=+.++.-.|..+|..+|......
T Consensus 158 ~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~ 189 (246)
T TIGR02964 158 EAPPGSYFLVLTHDHALDLELCHAALRRGDFA 189 (246)
T ss_pred cCCCCcEEEEEeCChHHHHHHHHHHHhCCCCc
Confidence 35567778888899999999999999544443
No 242
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.05 E-value=0.013 Score=59.50 Aligned_cols=94 Identities=16% Similarity=0.136 Sum_probs=63.5
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---cc--c---ccC-------------------ce-
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VT--F---PSA-------------------AR- 207 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---~~--~---~~g-------------------~~- 207 (632)
...|.+++|.|||+|.+|..+|+.|...|+ ++.++|...-... .. + ..| +.
T Consensus 16 q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~ 95 (228)
T cd00757 16 QEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA 95 (228)
T ss_pred HHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 356899999999999999999999999998 7888886532111 00 0 000 00
Q ss_pred ---e--cCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 208 ---R--MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 208 ---~--~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
. ..++.+++..+|+|+.|+. +..++.++++.... .+.-+|..+
T Consensus 96 ~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 96 YNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred ecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 1 1234567888999888876 56777777765544 345566664
No 243
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.04 E-value=0.0093 Score=64.52 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=34.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG 198 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~ 198 (632)
.|++|+|+|+|..|....+.++++|++|+++|++....
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~ 203 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKL 203 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHH
Confidence 58999999999999999999999999999999987544
No 244
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.03 E-value=0.014 Score=56.38 Aligned_cols=38 Identities=16% Similarity=-0.048 Sum_probs=35.1
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
-+|.|++|.|||-|.+|...++.|...|++|.++++..
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence 57999999999999999999999999999999997654
No 245
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.02 E-value=0.077 Score=59.53 Aligned_cols=157 Identities=13% Similarity=0.070 Sum_probs=91.7
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC-----C-------------------ccccc--CceecCCH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG-----K-------------------VTFPS--AARRMDTL 212 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~-----~-------------------~~~~~--g~~~~~sL 212 (632)
+|.|++|.|.|+|++|...|+.|..+|++|++++...... . ..++. ++.. .+.
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~-i~~ 303 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKY-VEG 303 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEE-cCC
Confidence 5899999999999999999999999999999955421100 0 00000 1111 233
Q ss_pred HHHh-ccCCEEEEccCCChhhHhhccHHHHhccCC-Cc-EEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCC-CCCC
Q 006758 213 NDLL-AASDVISLHCAVTDETIQIINAECLQHIKP-GA-FLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP-QWME 288 (632)
Q Consensus 213 ~eLL-~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~-GA-vLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P-~~~~ 288 (632)
++++ ..|||++-| .+.+.|+++....++. |. +++--+.| .+..+|. +.|.++.|. .+=|+.-+- --.-
T Consensus 304 d~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~-~~PD~~aNAGGViv 375 (444)
T PRK14031 304 ARPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL-YAPGKAANAGGVSV 375 (444)
T ss_pred cccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE-EeChhhccCCCeee
Confidence 4442 458988665 4578899999888864 33 66666677 5555555 445555554 334443220 0000
Q ss_pred ccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHH
Q 006758 289 AWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFF 327 (632)
Q Consensus 289 ~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~ 327 (632)
+.+--..| .-+..|..++..+++.+.+.+.+.+.+.
T Consensus 376 s~~E~~qn---~~~~~W~~eeV~~~L~~~m~~~~~~v~~ 411 (444)
T PRK14031 376 SGLEMTQN---SIKLSWSSEEVDEKLKSIMKNIHEACVQ 411 (444)
T ss_pred ehhhhhcc---ccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00000112 2234556677777777776666666543
No 246
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.01 E-value=0.013 Score=63.70 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=49.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee-----cCCHHHHhccCCEEEE
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-----MDTLNDLLAASDVISL 224 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~-----~~sL~eLL~~ADVV~l 224 (632)
++||||||-|-.|+-|+..++.+|++|++.|+............... ...+.++++.||||..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 47899999999999999999999999999999876554332222211 2258899999999976
No 247
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.99 E-value=0.033 Score=59.79 Aligned_cols=96 Identities=18% Similarity=0.278 Sum_probs=62.0
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---------ccc-c--cCceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---------VTF-P--SAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---------~~~-~--~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
++.++|+|||.|.||..+|..+...|. +|+.+|.++.... ..+ . ..+....++ +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 455799999999999999999887774 8999998765221 000 0 112222455 5679999999977
Q ss_pred CCC----------------hhhHhhcc--HHHHhccCCCcEEEEcCCC
Q 006758 227 AVT----------------DETIQIIN--AECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 227 PlT----------------~~T~~lI~--~~~L~~MK~GAvLINvgRG 256 (632)
-.. .++..++. .+.+....|.+++||++--
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP 130 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNP 130 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 321 11222221 1234445578899999853
No 248
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.98 E-value=0.019 Score=60.49 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=33.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPE 195 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~ 195 (632)
+.|+++.|+|.|.+|+++|..|...|++ |.+++|+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 5789999999999999999999999996 99999975
No 249
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=95.93 E-value=0.016 Score=59.40 Aligned_cols=96 Identities=21% Similarity=0.256 Sum_probs=64.0
Q ss_pred cEEEEEeCChhhHHHHHHHhh--CCC-EEEEECCCCCCCCc-ccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLS--FKM-SVLYFDVPEGKGKV-TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka--fGm-~V~~~dr~~~~~~~-~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.+|||||+|.||+.+.+.++. .++ .|.+||++...... ....+.....+++|+++..|+|+=|..- +..+.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~e---- 75 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVRE---- 75 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHHH----
Confidence 379999999999999999984 245 47888988754431 1122334457899999999999888653 22222
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHH
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
-..+.||.|-=+|=++-|.+.|+.-
T Consensus 76 ~~~~~L~~g~d~iV~SVGALad~~l 100 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALADEGL 100 (255)
T ss_pred HhHHHHhcCCCEEEEechhccChHH
Confidence 2334455665566666677775543
No 250
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.91 E-value=0.0076 Score=56.29 Aligned_cols=110 Identities=10% Similarity=0.075 Sum_probs=70.9
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc--------------eecCCHHHHhccCCEEEEccCCCh
Q 006758 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--------------RRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~--------------~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
|.|+|.|.||.-+|..|+..|.+|..+.+.. ..+.....+. .......+.....|+|++|+...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~- 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY- 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-
Confidence 6899999999999999999999999999876 1110000000 01111234677899999998753
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEe
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCAL 278 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaL 278 (632)
++...+.. .-..+.+++.+|-.--| +-.++.|.+.+....+.++..
T Consensus 79 ~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~ 124 (151)
T PF02558_consen 79 QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVT 124 (151)
T ss_dssp GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEE
T ss_pred chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEE
Confidence 34555543 55566777777777666 444666776665556654443
No 251
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.87 E-value=0.03 Score=61.61 Aligned_cols=108 Identities=10% Similarity=0.130 Sum_probs=75.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------ccccc------------C-ceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------VTFPS------------A-ARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-------~~~~~------------g-~~~~~sL~eLL~~ADVV 222 (632)
++|.|+|.|-+|...|.++..+|.+|+.+|......+ +-++. + .....+..+.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 4789999999999999999999999999998753221 11111 1 23346788899999999
Q ss_pred EEccCCChhhHhhcc--------HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 223 SLHCAVTDETIQIIN--------AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 223 ~l~lPlT~~T~~lI~--------~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
++++|..+.-.|-++ ++....++..+++|+=|.-.+=-.+.+.+-+.+
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~ 136 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIRE 136 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHh
Confidence 999997665333332 346667776699999887555444444444443
No 252
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.85 E-value=0.063 Score=56.95 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=74.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH---hh--
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI---QI-- 235 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~---~l-- 235 (632)
.|++++|||--.=-..++++|...|++|+++.-....- ...++....+.++++.++|+|++-+|.+.+.. ..
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~ 77 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFS 77 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccCCceeeccHHHHhccCCEEEECCccccCCceeecccc
Confidence 37899999999988999999999999999865322110 12345555677899999999999999765421 11
Q ss_pred -----ccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 236 -----INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 236 -----I~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
++.+.++.|++|.+++ +|.+..- +.+.+.+..|.
T Consensus 78 ~~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~ 116 (296)
T PRK08306 78 NEKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRK 116 (296)
T ss_pred ccCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCe
Confidence 3578999999998544 4444322 33455666776
No 253
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.84 E-value=0.02 Score=60.45 Aligned_cols=90 Identities=20% Similarity=0.338 Sum_probs=55.5
Q ss_pred EEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-------cc---ccc--CceecCCHHHHhccCCEEEEccCCC--
Q 006758 165 LGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-------VT---FPS--AARRMDTLNDLLAASDVISLHCAVT-- 229 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~-------~~---~~~--g~~~~~sL~eLL~~ADVV~l~lPlT-- 229 (632)
|+|||.|.||..+|..+...|. +|+.+|++..... .. ... ......+.+ .+++||+|+++....
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecCCCCC
Confidence 6899999999999999886655 9999998764221 00 000 111223444 589999999987421
Q ss_pred h---------hhHhhcc--HHHHhccCCCcEEEEcCC
Q 006758 230 D---------ETIQIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 230 ~---------~T~~lI~--~~~L~~MK~GAvLINvgR 255 (632)
+ ++..++- ...+....|.+++|+++-
T Consensus 80 ~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 80 PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1 1222221 123444557778888874
No 254
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.78 E-value=0.041 Score=58.89 Aligned_cols=92 Identities=22% Similarity=0.217 Sum_probs=59.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------ccccc--CceecCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPS--AARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~~~~~--g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
.+|+|||.|.||..+|-.|...|. ++..||.+..... ..+.. .+....+.++ +++||+|+++.-..
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 489999999999999998876555 8999998764221 11111 1121245554 89999999965432
Q ss_pred h---hhH--------hhcc--HHHHhccCCCcEEEEcCC
Q 006758 230 D---ETI--------QIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 230 ~---~T~--------~lI~--~~~L~~MK~GAvLINvgR 255 (632)
. .|+ .++- .+.+....|.+++|+++-
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 2 233 1221 134555678999999984
No 255
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.75 E-value=0.041 Score=59.57 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=62.2
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-CCEEEE-ECCCCCCCCc---cccc--Cc--eecC--CHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVGR-SASARALATRSLSF-KMSVLY-FDVPEGKGKV---TFPS--AA--RRMD--TLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-Gm~V~~-~dr~~~~~~~---~~~~--g~--~~~~--sL~eLL~~ADVV~l~lPlT~ 230 (632)
++|+|||. |.+|+.+++.|..+ ++++.. +++.....+. .++. +. ..+. +.++++..+|+|++|+|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 37999998 99999999999987 788884 4654322221 1110 10 0122 45667678999999999632
Q ss_pred hhHhhccHHHHhcc-CCCcEEEEcCCChhhcHHHHH
Q 006758 231 ETIQIINAECLQHI-KPGAFLVNTGSSQLLDDCAVK 265 (632)
Q Consensus 231 ~T~~lI~~~~L~~M-K~GAvLINvgRG~iVDe~AL~ 265 (632)
. .+....+ +.|..+|+.+..--.+..+++
T Consensus 81 -s-----~~~~~~~~~~G~~VIDlS~~fR~~~~~~y 110 (346)
T TIGR01850 81 -S-----AELAPELLAAGVKVIDLSADFRLKDPEVY 110 (346)
T ss_pred -H-----HHHHHHHHhCCCEEEeCChhhhcCChhhh
Confidence 2 2222322 578999999876666644443
No 256
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.64 E-value=0.0089 Score=62.81 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=50.1
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc---c--Cceec---CCHHHHhccCCEEEEccCCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP---S--AARRM---DTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~---~--g~~~~---~sL~eLL~~ADVV~l~lPlT 229 (632)
+.|+++.|||.|.+|++++..|...|+ +|.+++|+....+.... . ..... .++.+.+..+|+||.+.|..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 578999999999999999999999998 79999998643321100 0 01111 23345667889999998873
No 257
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.63 E-value=0.022 Score=63.19 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=46.4
Q ss_pred EEEEEeCChhhHHHHH---HH---hhCCCEEEEECCCCCCCCc------------ccccCceecCCHHHHhccCCEEEEc
Q 006758 164 VLGIVGRSASARALAT---RS---LSFKMSVLYFDVPEGKGKV------------TFPSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~---~L---kafGm~V~~~dr~~~~~~~------------~~~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
+|+|||.|.+|..++- .+ ...|.+|..||++....+. .....+....++.+.+..||+|+.+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a 81 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT 81 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence 6999999999998665 32 3346799999998643220 0111223356789999999999999
Q ss_pred cCC
Q 006758 226 CAV 228 (632)
Q Consensus 226 lPl 228 (632)
+|.
T Consensus 82 i~~ 84 (423)
T cd05297 82 IQV 84 (423)
T ss_pred eEe
Confidence 994
No 258
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.63 E-value=0.068 Score=49.40 Aligned_cols=100 Identities=21% Similarity=0.181 Sum_probs=58.1
Q ss_pred EEEEEeC-ChhhHHHHHHHhh-CCCEEE-EECCCCCCCC--------cccccCceecCCHHHHhccCCEEEEccCCChh-
Q 006758 164 VLGIVGR-SASARALATRSLS-FKMSVL-YFDVPEGKGK--------VTFPSAARRMDTLNDLLAASDVISLHCAVTDE- 231 (632)
Q Consensus 164 tVGIIGl-G~IG~~vA~~Lka-fGm~V~-~~dr~~~~~~--------~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~- 231 (632)
+|+|+|+ |+||+.+++.+.. -|+++. ++++...... .....+....+++++++..+|+|+-.. +|+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~~ 79 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPDA 79 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChHH
Confidence 6999999 9999999999997 688854 4566651111 011234455689999999999998776 344
Q ss_pred hHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
+...+ +.. ++.|.-+|-...|---.+.+.++.+.
T Consensus 80 ~~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a 113 (124)
T PF01113_consen 80 VYDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEELA 113 (124)
T ss_dssp HHHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred hHHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHHh
Confidence 32222 222 23355555555555433334444443
No 259
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.57 E-value=0.066 Score=59.73 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=69.5
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-----cccccCceec--CCHHHHhccCCEEEEccCCChhh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-----VTFPSAARRM--DTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-----~~~~~g~~~~--~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
+.+++|+|+|+|..|.++|+.|+..|++|.++|....... .....++... ....+.+..+|+|+.. |.-+.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~ 90 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID 90 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence 5789999999999999999999999999999997653221 0111132221 2224556789999987 433222
Q ss_pred Hhh-----------ccH-HHH-hccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 233 IQI-----------INA-ECL-QHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 233 ~~l-----------I~~-~~L-~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
..+ +++ +.+ ...+.-.+-|--+.|+..-..-|...|..
T Consensus 91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 111 222 122 22233356666667888777777777764
No 260
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=95.56 E-value=0.18 Score=53.85 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=51.0
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc------ccC--ceecCCHHHHhccCCEEEEc
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF------PSA--ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~------~~g--~~~~~sL~eLL~~ADVV~l~ 225 (632)
+.|.+|+|+|= +++..+++..+..||++|.+..|..-...... ..| .....++++.++++|||..-
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 224 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTD 224 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 68999999998 78999999999999999999998652221111 112 33457999999999999875
No 261
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.55 E-value=0.023 Score=58.67 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=34.8
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
...|..++|.|||+|.+|..+|+.|...|. ++.++|...
T Consensus 27 Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 27 QEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred HHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 357999999999999999999999999998 788888763
No 262
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.54 E-value=0.25 Score=49.64 Aligned_cols=72 Identities=10% Similarity=0.001 Sum_probs=48.5
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccccC-cee-cCCH-HHHhccCCEEEEccCCC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSA-ARR-MDTL-NDLLAASDVISLHCAVT 229 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~~g-~~~-~~sL-~eLL~~ADVV~l~lPlT 229 (632)
.+|.|++|.|||.|.+|...++.|...|++|+++++...... .....+ +.. ...+ .+.+..+|+|+.+....
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~ 81 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP 81 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH
Confidence 468999999999999999999999999999999997643211 011111 110 0111 33466778777776543
No 263
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.50 E-value=0.028 Score=57.87 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=34.8
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|++++|.|+|.|.+|..+|..|...|. ++.++|...
T Consensus 19 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 19 QEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 356899999999999999999999999997 788888764
No 264
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=95.45 E-value=0.0076 Score=61.89 Aligned_cols=135 Identities=15% Similarity=0.085 Sum_probs=85.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---------------cc---cccC-----------ceecCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---------------VT---FPSA-----------ARRMDT 211 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~---------------~~---~~~g-----------~~~~~s 211 (632)
.-+.|+|||.|.||..||+.+...|.+|..+|.+..... +. .+.+ .+...+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 346799999999999999999999999999999865322 00 0000 112345
Q ss_pred HHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCcc
Q 006758 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAW 290 (632)
Q Consensus 212 L~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLI-NvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~p 290 (632)
+.+++.++|+|+=++--+-+.+.-|-++.=...|+.++|+ |+++ +-...+..+++..... ++|-.|.++|-
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~srf-~GlHFfNPvPv---- 161 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSRF-AGLHFFNPVPV---- 161 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhhh-ceeeccCCchh----
Confidence 6677778888876665444433333344444567777765 5555 3455677777765544 68887876443
Q ss_pred ccCCCcEEEcCCCC
Q 006758 291 VREMPNVLILPRSA 304 (632)
Q Consensus 291 L~~~pNVIiTPHiA 304 (632)
-++=.||=|+..+
T Consensus 162 -MKLvEVir~~~TS 174 (298)
T KOG2304|consen 162 -MKLVEVIRTDDTS 174 (298)
T ss_pred -HHHhhhhcCCCCC
Confidence 2334566666543
No 265
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.41 E-value=0.085 Score=59.66 Aligned_cols=103 Identities=13% Similarity=0.192 Sum_probs=71.3
Q ss_pred cccCcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCCc--cc---------c-----------cCc
Q 006758 159 RCRGLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGKV--TF---------P-----------SAA 206 (632)
Q Consensus 159 ~L~GktVGIIGl----------G~IG~~vA~~LkafGm~V~~~dr~~~~~~~--~~---------~-----------~g~ 206 (632)
.+.|++|+|+|+ ..-...+++.|...|++|.+|||....... .+ + ...
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 478999999998 567889999999999999999998533211 01 0 012
Q ss_pred eecCCHHHHhccCCEEEEccCCChhhHhhccHH-HHhccCCCcEEEEcCCChhhcHHHHH
Q 006758 207 RRMDTLNDLLAASDVISLHCAVTDETIQIINAE-CLQHIKPGAFLVNTGSSQLLDDCAVK 265 (632)
Q Consensus 207 ~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~-~L~~MK~GAvLINvgRG~iVDe~AL~ 265 (632)
...+++.+.++.||+|+++.... +-+. ++-+ ....|++..++||. |+ ++|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWD-EFKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCCh-Hhcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 33557778999999999998863 3333 3433 35567766688985 43 45665554
No 266
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.35 E-value=0.063 Score=57.12 Aligned_cols=91 Identities=14% Similarity=0.193 Sum_probs=58.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCCc-c--cccC-------ceecCCHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGKV-T--FPSA-------ARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--m~V~~~dr~~~~~~~-~--~~~g-------~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
++|+|||.|.+|..+|..|...| .+|..+|++...... . +... .....+. +.+++||+|+++++...
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~~ 79 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGANQ 79 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCCC
Confidence 36999999999999999999888 589999987632210 0 0000 0112344 56899999999998642
Q ss_pred h-----------hHhhcc--HHHHhccCCCcEEEEcC
Q 006758 231 E-----------TIQIIN--AECLQHIKPGAFLVNTG 254 (632)
Q Consensus 231 ~-----------T~~lI~--~~~L~~MK~GAvLINvg 254 (632)
. +..++. .+.+....+.+++++++
T Consensus 80 ~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 80 KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 2 112221 12344455778888885
No 267
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.33 E-value=0.057 Score=57.77 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=59.7
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-----------c----------------ccccCc--e------
Q 006758 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-----------V----------------TFPSAA--R------ 207 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~-----------~----------------~~~~g~--~------ 207 (632)
+|.|||.|.+|..+|+.|.+.|. ++.++|...-... . .....+ .
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 58999999999999999999998 7888885421100 0 000000 0
Q ss_pred -----------------ecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 208 -----------------RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 208 -----------------~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
....+.+++.++|+|+.++ .+-+++.+++...... +..+||.+-
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~---~k~~I~aal 141 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAK---NKLVINAAL 141 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHh---CCcEEEEEe
Confidence 1113678899999999998 5678888887655443 337777654
No 268
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.30 E-value=0.015 Score=59.33 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=50.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc--c--cccC-----ceecCCHHHH-hccCCEEEEccCCChh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV--T--FPSA-----ARRMDTLNDL-LAASDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~--~--~~~g-----~~~~~sL~eL-L~~ADVV~l~lPlT~~ 231 (632)
+++.|||+|.+|..+|+.|...|++|+.+|++...... . +... +.....|.++ +.++|+++.+......
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence 47899999999999999999999999999988754332 1 1111 1122346666 7889999998876444
No 269
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.23 E-value=0.05 Score=59.12 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=92.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----ccCceecCCHHHH---hccCCEEEEccCCChhhHh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-----PSAARRMDTLNDL---LAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----~~g~~~~~sL~eL---L~~ADVV~l~lPlT~~T~~ 234 (632)
..||+||++.||+.++.+....|+.|.+|+|+....+..+ ...+....+++++ ++.--+|++.+-...-.-.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 4589999999999999999999999999999875544111 1122334577776 5567788888776655555
Q ss_pred hccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
+| ++....|-+|-+||+-|...--|...-.+.|....|...+.-|.-
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSG 133 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSG 133 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccC
Confidence 55 578888999999999999999999999999998887766666653
No 270
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.23 E-value=0.033 Score=52.82 Aligned_cols=86 Identities=27% Similarity=0.268 Sum_probs=52.1
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhcc
Q 006758 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHI 244 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~M 244 (632)
+-|+|.|.+|+++++.++.+|++|.++|+.+.. + +.++-+. +.+. ..+. +.+ .+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~----~--------------~~~~~~~-~~~~----~~~~--~~~-~~ 54 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER----F--------------PEADEVI-CIPP----DDIL--EDL-EI 54 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-------------------TTSSEEE-CSHH----HHHH--HHC--S
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc----c--------------CCCCccE-ecCh----HHHH--hcc-CC
Confidence 469999999999999999999999999988421 1 1333322 2221 1111 122 46
Q ss_pred CCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEe
Q 006758 245 KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCAL 278 (632)
Q Consensus 245 K~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaL 278 (632)
.+++++| +.++.-.|..+|..+|.. .....++
T Consensus 55 ~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136)
T PF13478_consen 55 DPNTAVV-MTHDHELDAEALEAALAS-PARYIGL 86 (136)
T ss_dssp -TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred CCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence 6677767 889999999999999887 4443443
No 271
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=95.21 E-value=0.027 Score=58.28 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=72.8
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEE--------CCCCCCCC-------------cccc---c-CceecCCHH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF--------DVPEGKGK-------------VTFP---S-AARRMDTLN 213 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~--------dr~~~~~~-------------~~~~---~-g~~~~~sL~ 213 (632)
.++|+++.|-|+|++|..+|+.|...|++|+++ |+..-..+ ..++ . +...+ +-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~ 107 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYI-PND 107 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEE-CHH
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEe-ccc
Confidence 489999999999999999999999999999887 43321000 0011 0 11111 222
Q ss_pred -HHh-ccCCEEEEccCCChhhHhhccHHHHh-ccCCC-cEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 214 -DLL-AASDVISLHCAVTDETIQIINAECLQ-HIKPG-AFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 214 -eLL-~~ADVV~l~lPlT~~T~~lI~~~~L~-~MK~G-AvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
+++ ..|||++.|. ..+.|+.+... .++.| -+||--+.+.+. .+|.. .|.+..|. .+=|.
T Consensus 108 ~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~-viPD~ 170 (244)
T PF00208_consen 108 DEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGIL-VIPDF 170 (244)
T ss_dssp CHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-E-EE-HH
T ss_pred cccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCE-EEcch
Confidence 455 5799999883 34778888877 77655 466677777765 44444 77777765 34443
No 272
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=95.21 E-value=0.041 Score=60.81 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=94.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC------------------CCCccc-ccCceecCCHHHHhc-c
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG------------------KGKVTF-PSAARRMDTLNDLLA-A 218 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~------------------~~~~~~-~~g~~~~~sL~eLL~-~ 218 (632)
.|.|+||.|=|+|++|+.+|+.|...|++|+++|.+.. ...... ..++..... ++++. .
T Consensus 204 ~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~~ 282 (411)
T COG0334 204 DLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEVD 282 (411)
T ss_pred CcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccccc
Confidence 38999999999999999999999999999999986654 100000 012233322 55544 5
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEE
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVI 298 (632)
|||++=| .+.+.|+.+....++-. +++-.+.|++-. +|--..++.|-+. +=|..-+ .-.|+
T Consensus 283 cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t~-eA~~i~~erGIl~--~PD~laN----------AGGV~ 343 (411)
T COG0334 283 CDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTTP-EADEILLERGILV--VPDILAN----------AGGVI 343 (411)
T ss_pred CcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCCH-HHHHHHHHCCCEE--cChhhcc----------CcCee
Confidence 8988544 56788999999999866 889999998763 3333333444332 3333221 11222
Q ss_pred EcC--------CCCCccHHHHHHHHHHHHHHHHHHHHcC
Q 006758 299 ILP--------RSADYSEEVWMEIRDKAISVLQTFFFDG 329 (632)
Q Consensus 299 iTP--------HiAg~T~ea~~~~~~~a~~nL~~fL~~G 329 (632)
.+= -..|..+++..++..++.+..+.+....
T Consensus 344 vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~~~ 382 (411)
T COG0334 344 VSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQAA 382 (411)
T ss_pred eehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1224456677777777777776665433
No 273
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=95.18 E-value=0.29 Score=52.30 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=50.4
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccCCEEEEc
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~ADVV~l~ 225 (632)
+.|.+|+++|= +++..+++..+..||++|.+..|..-.....+ ..+ .....++++.+++||||..-
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 223 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTD 223 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 68999999997 78889999999999999999998653221100 012 33467999999999999884
No 274
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.16 E-value=0.062 Score=54.37 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=34.5
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~ 194 (632)
+..|+..+|.|||.|.+|..+|..|...|. ++.++|..
T Consensus 23 q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 23 LEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 356899999999999999999999999998 59999987
No 275
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.10 E-value=0.043 Score=59.42 Aligned_cols=39 Identities=21% Similarity=0.101 Sum_probs=35.7
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
...|..++|.|||.|.+|..+|..|...|. +|.++|...
T Consensus 19 Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 19 QQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 467999999999999999999999999999 899999863
No 276
>PRK08223 hypothetical protein; Validated
Probab=95.10 E-value=0.055 Score=57.49 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=34.9
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|++.+|.|||+|.+|..+|..|.+.|. ++.++|...
T Consensus 22 Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 22 QQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 467999999999999999999999999998 788888663
No 277
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.10 E-value=0.037 Score=58.22 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=68.7
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCC------cccccCceecCCHHHHhccCCEEEEccCCCh
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGK------VTFPSAARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~------~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
.+|+..|++|+|+ |.||..+|+.|.+.++.....-|...... ...+.+.....+++..+.+.|+++-.....
T Consensus 163 idlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~~- 241 (351)
T COG5322 163 IDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASMP- 241 (351)
T ss_pred cCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeecC-
Confidence 5789999999997 99999999999998886665554322111 111233334557777777777776654432
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCChhhcHH
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDC 262 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~ 262 (632)
+-..|+. .++|||+++|+-|+-.=||+.
T Consensus 242 -~g~~I~p---q~lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 242 -KGVEIFP---QHLKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred -CCceech---hhccCCeEEEcCCcCcccccc
Confidence 2356776 458899999999987766553
No 278
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.07 E-value=0.034 Score=61.11 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=57.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-cC-------ceecCCHHHH-hccCCEEEEccCCChhhH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SA-------ARRMDTLNDL-LAASDVISLHCAVTDETI 233 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-~g-------~~~~~sL~eL-L~~ADVV~l~lPlT~~T~ 233 (632)
++|.|+|+|.+|+.+|+.|...|.+|+++|++......... .+ ......|+++ +..+|+|+++++....+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n- 79 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETN- 79 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHH-
Confidence 46899999999999999999999999999987543221111 11 1122345556 78899999998864433
Q ss_pred hhccHHHHhcc-CCCcEEEEc
Q 006758 234 QIINAECLQHI-KPGAFLVNT 253 (632)
Q Consensus 234 ~lI~~~~L~~M-K~GAvLINv 253 (632)
++-......+ +...+++-+
T Consensus 80 -~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 80 -MVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred -HHHHHHHHHhcCCCeEEEEE
Confidence 2223334444 333444443
No 279
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.99 E-value=0.06 Score=58.28 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=44.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEEECCCCCC-CC---c--c-------------cc-cCceecCCHHHHhccCCE
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVLYFDVPEGK-GK---V--T-------------FP-SAARRMDTLNDLLAASDV 221 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~~dr~~~~-~~---~--~-------------~~-~g~~~~~sL~eLL~~ADV 221 (632)
.+|||+|+|+||+.+++.+... +|+|.+....... .. . . +. .+.....++++++..+|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 3699999999999999988754 7887776432210 00 0 0 00 122233567888888999
Q ss_pred EEEccCC
Q 006758 222 ISLHCAV 228 (632)
Q Consensus 222 V~l~lPl 228 (632)
|+.|.|.
T Consensus 82 VIdaT~~ 88 (341)
T PRK04207 82 VVDATPG 88 (341)
T ss_pred EEECCCc
Confidence 9999875
No 280
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.98 E-value=0.05 Score=59.88 Aligned_cols=101 Identities=12% Similarity=0.135 Sum_probs=67.1
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhC-CCEEEEECCCCCCCCc---ccc----cCceecCCHHH-HhccCCEEEEccCCCh
Q 006758 161 RGLVLGIVGR-SASARALATRSLSF-KMSVLYFDVPEGKGKV---TFP----SAARRMDTLND-LLAASDVISLHCAVTD 230 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~---~~~----~g~~~~~sL~e-LL~~ADVV~l~lPlT~ 230 (632)
..++|+|+|. |.+|+.+.+.|... +++|..+.+....++. ..+ .......+++. .++++|+|++++|..
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~- 115 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG- 115 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-
Confidence 4568999998 89999999999987 7898888765433321 010 00111222332 258899999999962
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHH
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~A 267 (632)
.. .+....|+.|..+|+.+..-..+..+.++.
T Consensus 116 ~s-----~~i~~~~~~g~~VIDlSs~fRl~~~~~y~~ 147 (381)
T PLN02968 116 TT-----QEIIKALPKDLKIVDLSADFRLRDIAEYEE 147 (381)
T ss_pred HH-----HHHHHHHhCCCEEEEcCchhccCCcccchh
Confidence 23 344444567899999998777776665543
No 281
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.97 E-value=0.11 Score=57.29 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=64.0
Q ss_pred cccCcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCC
Q 006758 159 RCRGLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 159 ~L~GktVGIIGl----------G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
.+.|++|+|+|+ ..-...+++.|...|++|.+|||........ ......++++.+..||+|+++.+.
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~---~~~~~~~~~~~~~~ad~~v~~t~~ 386 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVK---GLPLIDDLEEALKGADALVILTDH 386 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhh---hcccCCCHHHHHhCCCEEEEecCC
Confidence 368999999998 4577899999999999999999986432211 111247899999999999999886
Q ss_pred ChhhHhhccHHHHhc-cCCCcEEEEc
Q 006758 229 TDETIQIINAECLQH-IKPGAFLVNT 253 (632)
Q Consensus 229 T~~T~~lI~~~~L~~-MK~GAvLINv 253 (632)
.. -+. ++-+.+.. |+ ..++|++
T Consensus 387 ~~-~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 387 DE-FKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HH-Hhc-cCHHHHHHhcC-CCEEEeC
Confidence 32 222 34444444 54 5578874
No 282
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=94.90 E-value=0.14 Score=54.83 Aligned_cols=65 Identities=22% Similarity=0.259 Sum_probs=51.4
Q ss_pred ccCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
+.|++|++||= +++..+++..+..||++|.+..|..-... ... ......++++.++.||||....
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~-~~~-~~~~~~d~~ea~~~aDvvyt~~ 221 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPE-GMP-EYGVHTDLDEVIEDADVVMMLR 221 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcc-ccc-ceEEECCHHHHhCCCCEEEECC
Confidence 68999999987 58999999999999999999998653221 111 1245689999999999998743
No 283
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.82 E-value=0.089 Score=58.03 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=64.0
Q ss_pred ccCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCC
Q 006758 160 CRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 160 L~GktVGIIGlG----------~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
|.|++|||+|+- .-...++.+|+..|++|.+|||-........-.+.....+++++++.||+|+++.-.
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew- 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEW- 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccH-
Confidence 789999999984 457889999999999999999986443311111356678999999999999998654
Q ss_pred hhhHhhccHHHHhccCCCcEEEE
Q 006758 230 DETIQIINAECLQHIKPGAFLVN 252 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLIN 252 (632)
++-+.+ +-+.+ .|| +.++|+
T Consensus 387 ~ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 387 DEFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred HHHhcc-Chhhh-hcc-CCEEEe
Confidence 233332 33344 665 556665
No 284
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=94.80 E-value=0.15 Score=54.42 Aligned_cols=66 Identities=20% Similarity=0.335 Sum_probs=51.0
Q ss_pred ccCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----ccC--ceecCCHHHHhccCCEEEEc
Q 006758 160 CRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVPEGKGKVTF-----PSA--ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 160 L~GktVGIIGlG---~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----~~g--~~~~~sL~eLL~~ADVV~l~ 225 (632)
+.|.+|++||-| ++..+++..+..||++|.+..|..-.....+ ..| +....++++.++.||||...
T Consensus 148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~ 223 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVT 223 (301)
T ss_pred CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEEC
Confidence 689999999995 9999999999999999999998653211111 112 23467999999999999773
No 285
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=94.78 E-value=0.37 Score=54.28 Aligned_cols=157 Identities=16% Similarity=0.115 Sum_probs=89.0
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCC----CCCC-------------------ccccc---CceecC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPE----GKGK-------------------VTFPS---AARRMD 210 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~-dr~~----~~~~-------------------~~~~~---g~~~~~ 210 (632)
.+|.|+||.|=|+|++|+.+|+.|..+|++|+.+ |.+. ..+. ..+.. ++...
T Consensus 233 ~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~- 311 (454)
T PTZ00079 233 DSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV- 311 (454)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-
Confidence 3589999999999999999999999999999944 4441 0000 01100 12222
Q ss_pred CHHHHh-ccCCEEEEccCCChhhHhhccHHHHhcc-CCCc-EEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCC-CC
Q 006758 211 TLNDLL-AASDVISLHCAVTDETIQIINAECLQHI-KPGA-FLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP-QW 286 (632)
Q Consensus 211 sL~eLL-~~ADVV~l~lPlT~~T~~lI~~~~L~~M-K~GA-vLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P-~~ 286 (632)
+-++++ -.|||.+-| .|.+.|+.+....+ +.++ +++--+-+.+.. + -.+.|.+..|. .+=|..-+- --
T Consensus 312 ~~~~~~~~~cDI~iPc-----A~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-e-A~~~L~~~GI~-~~PD~~aNAGGV 383 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPC-----ATQNEINLEDAKLLIKNGCKLVAEGANMPTTI-E-ATHLFKKNGVI-FCPGKAANAGGV 383 (454)
T ss_pred CCcCcccCCccEEEec-----cccccCCHHHHHHHHHcCCeEEEecCCCCCCH-H-HHHHHHHCCcE-EEChhhhcCCCe
Confidence 222332 368988766 36788888877755 3333 556666676654 3 34566766665 334433220 00
Q ss_pred CCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHH
Q 006758 287 MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326 (632)
Q Consensus 287 ~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL 326 (632)
.-+.|--..|.. +..|..+++..++.+.+.+.....+
T Consensus 384 ~vS~~E~~Qn~~---~~~W~~eeV~~~L~~~M~~~~~~~~ 420 (454)
T PTZ00079 384 AISGLEMSQNAA---RLQWTAEEVDEKLREIMKSIFEACV 420 (454)
T ss_pred eeehHHhhhhhc---ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 001000011221 4566667776666666665555544
No 286
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.74 E-value=0.059 Score=48.06 Aligned_cols=86 Identities=13% Similarity=0.166 Sum_probs=55.2
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-------eecCCHHH-HhccCCEEEEccCCChhhHhhc
Q 006758 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLND-LLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-------~~~~sL~e-LL~~ADVV~l~lPlT~~T~~lI 236 (632)
|.|+|+|.+|+.+++.|+..+.+|+++|.++.........+. .....|.+ =+.++|.|+++.+.... ++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~--n~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE--NLL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH--HHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH--HHH
Confidence 579999999999999999977799999988643221111111 11122333 26789999999885443 343
Q ss_pred cHHHHhccCCCcEEEE
Q 006758 237 NAECLQHIKPGAFLVN 252 (632)
Q Consensus 237 ~~~~L~~MK~GAvLIN 252 (632)
-...+..+-+...+|-
T Consensus 79 ~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHCCCCeEEE
Confidence 3556666666655553
No 287
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=94.72 E-value=0.066 Score=58.18 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=46.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce-----ecCCHHHHhccCCEEEE
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-----RMDTLNDLLAASDVISL 224 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~-----~~~sL~eLL~~ADVV~l 224 (632)
.++|||||-|..|+.++..++.+|++|+++|+++......+..... ..+.+.+++..||+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 3789999999999999999999999999999876443211211111 12247778889999854
No 288
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.71 E-value=0.11 Score=49.63 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=48.9
Q ss_pred EEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----ccccCceecCCHHHHhccCCEEEEccCCChh
Q 006758 165 LGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKV-----TFPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 165 VGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
|.|+|. |.+|+.+++.|...|.+|.++.|+...... ..........++.+.+..+|+|+.+++.+..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 678994 999999999999999999999998753221 0001112234567788899999999976444
No 289
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.65 E-value=0.043 Score=59.02 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=33.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.|+.|||+|+|-+|.--.+.++|||++|+++|+...
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~ 216 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK 216 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence 799999999999999999999999999999998863
No 290
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.60 E-value=0.13 Score=57.22 Aligned_cols=112 Identities=12% Similarity=0.079 Sum_probs=68.7
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEc--cCCC-h----h
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLH--CAVT-D----E 231 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~--lPlT-~----~ 231 (632)
.+.|++|.|||+|.+|.++|+.|+..|++|.++|............++.....-.+-+..+|+|+.. +|.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 4678999999999999999999999999999999664322111111222111111235679988863 2321 1 1
Q ss_pred ---hHhh----ccH-HHHhc-c-----CCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 232 ---TIQI----INA-ECLQH-I-----KPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 232 ---T~~l----I~~-~~L~~-M-----K~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
++.. +.. +.+.. + +...+-|.-+.|+.--..-|...|+.
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~ 138 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE 138 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 1111 332 22222 2 33466777778998877777888875
No 291
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=94.59 E-value=0.53 Score=51.55 Aligned_cols=67 Identities=7% Similarity=0.077 Sum_probs=48.0
Q ss_pred cccCcEEEEEeCC--------hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccC
Q 006758 159 RCRGLVLGIVGRS--------ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAAS 219 (632)
Q Consensus 159 ~L~GktVGIIGlG--------~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~A 219 (632)
.|+|++|+|+|.| ++..+++..+..|||+|.+..|..-...... ..+ .....++++.++++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999853 3446778888899999999998642111000 112 23468999999999
Q ss_pred CEEEEc
Q 006758 220 DVISLH 225 (632)
Q Consensus 220 DVV~l~ 225 (632)
|||..-
T Consensus 247 Dvvyt~ 252 (357)
T TIGR03316 247 DIVYPK 252 (357)
T ss_pred CEEEEC
Confidence 999886
No 292
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=94.58 E-value=0.14 Score=54.92 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=50.7
Q ss_pred ccCcEEEEEeC---ChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEE
Q 006758 160 CRGLVLGIVGR---SASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l 224 (632)
+.|.+|++||= +++..+++..+..||+ +|.+..|..-..............++++.++.+|||..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 68999999998 5999999999999999 99999986522111111224446899999999999977
No 293
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=94.57 E-value=0.22 Score=55.77 Aligned_cols=107 Identities=8% Similarity=0.121 Sum_probs=75.5
Q ss_pred ccCcEEEEEeC----ChhhHHHHHHHhhCCC--EEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 160 CRGLVLGIVGR----SASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 160 L~GktVGIIGl----G~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
+.-++|+|||. |.+|..+.+.++..|+ +|+.+++..... .+...+.+++++-...|++++++|. +.+.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~ 78 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVPA-KYVP 78 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCCCCCCEEEEecCH-HHHH
Confidence 46688999999 8899999999998887 798889875322 3556678999998889999999995 3445
Q ss_pred hhccHHHHhccCC-CcEEEEcCCCh-----hhcHHHHHHHHHcCCcc
Q 006758 234 QIINAECLQHIKP-GAFLVNTGSSQ-----LLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 234 ~lI~~~~L~~MK~-GAvLINvgRG~-----iVDe~AL~~AL~sg~I~ 274 (632)
.++.+ ..+ ..- .+++|.-+-++ ...+++|.++.+++.+.
T Consensus 79 ~~l~e-~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 79 QVVEE-CGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR 123 (447)
T ss_pred HHHHH-HHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence 55532 333 343 44444333322 23467788888877766
No 294
>PRK08328 hypothetical protein; Provisional
Probab=94.57 E-value=0.076 Score=54.31 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=34.9
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|++++|.|||.|.+|..+|..|...|. ++.++|...
T Consensus 22 q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 22 QEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 467999999999999999999999999998 788888654
No 295
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.54 E-value=0.084 Score=52.78 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=35.3
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|.+++|.|||+|.+|..+|+.|...|+ ++..+|...
T Consensus 16 Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 16 QKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 467999999999999999999999999999 699998764
No 296
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=94.54 E-value=0.45 Score=56.77 Aligned_cols=181 Identities=13% Similarity=0.182 Sum_probs=116.7
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHH
Q 006758 102 DLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS 181 (632)
Q Consensus 102 erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L 181 (632)
+..|+|+|.+--. +|=-+++.+|+.+|-. .+.+.+.+|.|.|.|.-|..+|+.|
T Consensus 151 ~~~ip~f~DD~~G---Ta~v~lA~l~na~~~~-----------------------~~~~~~~~iv~~GaGaag~~~a~~l 204 (752)
T PRK07232 151 RMDIPVFHDDQHG---TAIISAAALLNALELV-----------------------GKKIEDVKIVVSGAGAAAIACLNLL 204 (752)
T ss_pred hcCCCeeccccch---HHHHHHHHHHHHHHHh-----------------------CCChhhcEEEEECccHHHHHHHHHH
Confidence 4579999985433 3444677777776521 0347889999999999999999999
Q ss_pred hhCCC---EEEEECCCCC----C-C--C---cccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCc
Q 006758 182 LSFKM---SVLYFDVPEG----K-G--K---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (632)
Q Consensus 182 kafGm---~V~~~dr~~~----~-~--~---~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GA 248 (632)
...|+ +++.+|+..- . . . ..+... ....+|.|++..+|+++=.- +-++|+++.+..|.+.+
T Consensus 205 ~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~~v~~M~~~p 278 (752)
T PRK07232 205 VALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEGADVFLGLS-----AAGVLTPEMVKSMADNP 278 (752)
T ss_pred HHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCC
Confidence 99998 7999997631 1 0 0 111111 22358999999999887642 14899999999999999
Q ss_pred EEEEcCCChhhcHHHHHHHHHc--CCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccH-----HHHHHHHHHHHHH
Q 006758 249 FLVNTGSSQLLDDCAVKQLLID--GTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSE-----EVWMEIRDKAISV 321 (632)
Q Consensus 249 vLINvgRG~iVDe~AL~~AL~s--g~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~-----ea~~~~~~~a~~n 321 (632)
++.=.+.-.. |..-.+|.+- |.|.+-+- ...|- ...|+++=|-++-..- ..-++|...+++-
T Consensus 279 iifalsNP~~--E~~p~~a~~~~~~~i~atGr--s~~pn-------Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~a 347 (752)
T PRK07232 279 IIFALANPDP--EITPEEAKAVRPDAIIATGR--SDYPN-------QVNNVLCFPYIFRGALDVGATTINEEMKLAAVRA 347 (752)
T ss_pred EEEecCCCCc--cCCHHHHHHhcCCEEEEECC--cCCCC-------cccceeecchhhHHHHHcCCccCCHHHHHHHHHH
Confidence 9999998764 3222333332 33443321 11121 4568888886432211 1234555555666
Q ss_pred HHHH
Q 006758 322 LQTF 325 (632)
Q Consensus 322 L~~f 325 (632)
|...
T Consensus 348 la~~ 351 (752)
T PRK07232 348 IAEL 351 (752)
T ss_pred HHhh
Confidence 6554
No 297
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.51 E-value=0.049 Score=61.46 Aligned_cols=111 Identities=11% Similarity=0.067 Sum_probs=69.0
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceec--CCHHHHhccCCEEEEccCCChhhH----
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM--DTLNDLLAASDVISLHCAVTDETI---- 233 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~--~sL~eLL~~ADVV~l~lPlT~~T~---- 233 (632)
+.|++|.|+|+|.+|.+.++.|+..|++|.++|............++... ....+.+..+|+|+..-...+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 47899999999999999999999999999999965322111111132221 123456678998888654433211
Q ss_pred ------hhccHHHHh-cc--------CCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 234 ------QIINAECLQ-HI--------KPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 234 ------~lI~~~~L~-~M--------K~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
.++++-.|. .+ +...+-|--+-|+.--..-|...|+.
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 123332221 11 11245566667888777777777775
No 298
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=94.51 E-value=0.17 Score=54.97 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=50.1
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------ccCceecCCHHHHhccCCEEEEc
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----------~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
.+.|.+|+|||= .++..+++..+..||++|.++.|..-.....+ ...+....++++.++.+|||..-
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~ 229 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTD 229 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 378999999997 67888888888899999999998642111001 11133467999999999999883
No 299
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.51 E-value=0.19 Score=53.31 Aligned_cols=36 Identities=11% Similarity=0.301 Sum_probs=32.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+.|+++.|||.|..+++++..|...|+ +|.+++|+.
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 678999999999999999999988897 899999985
No 300
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.47 E-value=0.23 Score=55.91 Aligned_cols=123 Identities=19% Similarity=0.153 Sum_probs=75.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----cccccCceec--CCHHHHhccCCEEEEc--cCCChh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----VTFPSAARRM--DTLNDLLAASDVISLH--CAVTDE 231 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~----~~~~~g~~~~--~sL~eLL~~ADVV~l~--lPlT~~ 231 (632)
+.+++|.|+|+|.-|.++|+.|...|++|.++|....... .....++... ....+.+..+|+|+.. +|.+..
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p 84 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP 84 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH
Confidence 4599999999999999999999999999999997664411 1111222111 1122667889999986 332221
Q ss_pred --------hHhhccH-HHHhcc---CCCcEEEEcCCChhhcHHHHHHHHHc--------CCcceEEeecCCC
Q 006758 232 --------TIQIINA-ECLQHI---KPGAFLVNTGSSQLLDDCAVKQLLID--------GTLAGCALDGAEG 283 (632)
Q Consensus 232 --------T~~lI~~-~~L~~M---K~GAvLINvgRG~iVDe~AL~~AL~s--------g~I~GAaLDVfE~ 283 (632)
-..+++. +.|.+. .| .+-|--+-|+.--..-+...|++ |.|...++|+.++
T Consensus 85 ~v~~A~~~gi~i~~dieL~~r~~~~~p-~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~ 155 (448)
T COG0771 85 LVEAAKAAGIEIIGDIELFYRLSGEAP-IVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQ 155 (448)
T ss_pred HHHHHHHcCCcEEeHHHHHHHhcCCCC-EEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcc
Confidence 0112222 233332 33 55555556887766555555553 5577778888765
No 301
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.47 E-value=0.043 Score=55.75 Aligned_cols=90 Identities=14% Similarity=0.005 Sum_probs=58.3
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-cC----ceecCCHHHHhccCCEEEEccCCChhh
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SA----ARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-~g----~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
.+|.|++|.|||-|.+|..=|+.+...|++|+++++........+. .+ ....-.++ .+..+++|+.+++..
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~-~~~~~~lviaAt~d~--- 83 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAE-DLDDAFLVIAATDDE--- 83 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChh-hhcCceEEEEeCCCH---
Confidence 5799999999999999999999999999999999988721110000 00 00111222 233477777776642
Q ss_pred HhhccHHHHhccCCCcEEEEc
Q 006758 233 IQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINv 253 (632)
-+|+..+...++-.++||+
T Consensus 84 --~ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 84 --ELNERIAKAARERRILVNV 102 (210)
T ss_pred --HHHHHHHHHHHHhCCceec
Confidence 2455555555555577775
No 302
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.44 E-value=0.12 Score=55.99 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=58.5
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-CCEEEEECCCCCCCCc---ccc-cC---ceecCCHHH-HhccCCEEEEccCCChhh
Q 006758 163 LVLGIVGR-SASARALATRSLSF-KMSVLYFDVPEGKGKV---TFP-SA---ARRMDTLND-LLAASDVISLHCAVTDET 232 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~---~~~-~g---~~~~~sL~e-LL~~ADVV~l~lPlT~~T 232 (632)
++|+|||. |.+|+.+++.|..+ ++++..+-......+. .++ .. ...+.++++ .+..+|+|++|+|....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~- 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS- 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-
Confidence 58999996 99999999999987 7787554332222210 011 00 011233333 45789999999996322
Q ss_pred HhhccHHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
..++ ...++.|..+|+.+-.--.+..+
T Consensus 82 ~~~v----~~a~~aG~~VID~S~~fR~~~~~ 108 (343)
T PRK00436 82 MDLA----PQLLEAGVKVIDLSADFRLKDPE 108 (343)
T ss_pred HHHH----HHHHhCCCEEEECCcccCCCCch
Confidence 2221 12235799999999766565533
No 303
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.44 E-value=0.035 Score=52.53 Aligned_cols=99 Identities=18% Similarity=0.313 Sum_probs=61.8
Q ss_pred cEEEEEeC-ChhhHHHHHHHhh--CCCEEEEECCCCCCCC----------cccccCceecCCHHHHhccCCEEEEccCC-
Q 006758 163 LVLGIVGR-SASARALATRSLS--FKMSVLYFDVPEGKGK----------VTFPSAARRMDTLNDLLAASDVISLHCAV- 228 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lka--fGm~V~~~dr~~~~~~----------~~~~~g~~~~~sL~eLL~~ADVV~l~lPl- 228 (632)
.+|+|||. |.+|..+|..|.. ++-++..+|+...... ..............+.+++||+|+++.-.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 47999999 9999999998874 5558999999843211 00001112223667788999999999843
Q ss_pred -Chh---------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 229 -TDE---------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 229 -T~~---------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
.+. +..++- ...+....|.+++|.++. .+|.-+
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtN--Pvd~~t 125 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTN--PVDVMT 125 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SS--SHHHHH
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCC--cHHHHH
Confidence 331 112221 124445568889998844 466433
No 304
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=94.43 E-value=0.028 Score=61.00 Aligned_cols=84 Identities=18% Similarity=0.164 Sum_probs=52.6
Q ss_pred EEEEeCChhhHHHHHHHhhCC-C-EEEEECCCCCCCCccc----cc-------CceecCCHHHHhccCCEEEEccCCChh
Q 006758 165 LGIVGRSASARALATRSLSFK-M-SVLYFDVPEGKGKVTF----PS-------AARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG-m-~V~~~dr~~~~~~~~~----~~-------g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
|+|+|.|.+|+.+++.|...+ . +|++.|++....+... .. .+....+|.++++++|+|+.|+|-.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-- 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-- 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--
Confidence 789999999999999998765 5 8999999875422110 00 1111234778999999999999753
Q ss_pred hHhhccHHH-HhccCCCcEEEEcC
Q 006758 232 TIQIINAEC-LQHIKPGAFLVNTG 254 (632)
Q Consensus 232 T~~lI~~~~-L~~MK~GAvLINvg 254 (632)
++... -..++.|.-.||++
T Consensus 79 ----~~~~v~~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 79 ----FGEPVARACIEAGVHYVDTS 98 (386)
T ss_dssp ----GHHHHHHHHHHHT-EEEESS
T ss_pred ----hhHHHHHHHHHhCCCeeccc
Confidence 22222 23345688888843
No 305
>PRK05086 malate dehydrogenase; Provisional
Probab=94.35 E-value=0.15 Score=54.49 Aligned_cols=93 Identities=14% Similarity=0.174 Sum_probs=58.2
Q ss_pred cEEEEEeC-ChhhHHHHHHHh---hCCCEEEEECCCCCCCCc--cccc-C----cee--cCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGR-SASARALATRSL---SFKMSVLYFDVPEGKGKV--TFPS-A----ARR--MDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lk---afGm~V~~~dr~~~~~~~--~~~~-g----~~~--~~sL~eLL~~ADVV~l~lPlT 229 (632)
++|+|||. |.||..+|..+. .++..+..+|+....... .+.. . ... ..++.+.++++|+|++++-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 47999999 999999998773 355689999976432110 1111 1 111 246678889999999998752
Q ss_pred hh---hH-hh------ccHH---HHhccCCCcEEEEcCC
Q 006758 230 DE---TI-QI------INAE---CLQHIKPGAFLVNTGS 255 (632)
Q Consensus 230 ~~---T~-~l------I~~~---~L~~MK~GAvLINvgR 255 (632)
.. ++ .+ +-.+ .+....+.+++|+++-
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 21 01 11 1122 3333457889999876
No 306
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=94.34 E-value=0.3 Score=51.83 Aligned_cols=162 Identities=11% Similarity=0.074 Sum_probs=103.5
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhC----CC-------EEEEECCCCC----CCC-----cccccCce--ecCCHHHHh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSF----KM-------SVLYFDVPEG----KGK-----VTFPSAAR--RMDTLNDLL 216 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lkaf----Gm-------~V~~~dr~~~----~~~-----~~~~~g~~--~~~sL~eLL 216 (632)
.|.+.+|.|+|.|.-|..+|+.+... |+ +++.+|+..- ... ..+..... ...+|.|++
T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i 101 (279)
T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVV 101 (279)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHH
Confidence 47899999999999999999999876 87 8999998741 100 11111111 235899999
Q ss_pred c--cCCEEEEccCCChhhHhhccHHHHhccC---CCcEEEEcCCChhhcHHHHHHHHH--cCC-cceEEe---ecCCCCC
Q 006758 217 A--ASDVISLHCAVTDETIQIINAECLQHIK---PGAFLVNTGSSQLLDDCAVKQLLI--DGT-LAGCAL---DGAEGPQ 285 (632)
Q Consensus 217 ~--~ADVV~l~lPlT~~T~~lI~~~~L~~MK---~GAvLINvgRG~iVDe~AL~~AL~--sg~-I~GAaL---DVfE~P~ 285 (632)
+ ++|+++=+-- .-|+|+++.++.|. +..+|.=.+.-....|+--.++++ +|+ |.+.+. +|..+
T Consensus 102 ~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~-- 175 (279)
T cd05312 102 KAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYN-- 175 (279)
T ss_pred HhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeC--
Confidence 9 8899977531 23899999999998 899999999876544444444444 354 443221 11100
Q ss_pred CCCccccCCCcEEEcCCCCCccH-----HHHHHHHHHHHHHHHHHH
Q 006758 286 WMEAWVREMPNVLILPRSADYSE-----EVWMEIRDKAISVLQTFF 326 (632)
Q Consensus 286 ~~~~pL~~~pNVIiTPHiAg~T~-----ea~~~~~~~a~~nL~~fL 326 (632)
-....--...|+++=|=++-... ..-++|...+++.|..+.
T Consensus 176 Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~ 221 (279)
T cd05312 176 GKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLV 221 (279)
T ss_pred CeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhC
Confidence 00001124668999897553322 223666667777777764
No 307
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.31 E-value=0.24 Score=54.76 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=70.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----cccc-cC--ceecCCHHHHhccCCEEEEccCCChh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----VTFP-SA--ARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~----~~~~-~g--~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
++.+++|.|+|.|.+|..+|+.|...|++|.++|+...... ..+. .+ ....+..++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 36899999999999999999999999999999998752211 0010 11 12223345667789999987654443
Q ss_pred hHhhc----------c-HHHHhc-cCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 232 TIQII----------N-AECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 232 T~~lI----------~-~~~L~~-MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
..-+. . .+.+.. .+.-.+-|--+.|+..-..-|...|..
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 22111 1 112222 232345555556888777777777764
No 308
>PLN02527 aspartate carbamoyltransferase
Probab=94.30 E-value=0.2 Score=53.59 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=49.1
Q ss_pred ccCcEEEEEeCC---hhhHHHHHHHhhC-CCEEEEECCCCCCCCccc-------ccCceecCCHHHHhccCCEEEEc
Q 006758 160 CRGLVLGIVGRS---ASARALATRSLSF-KMSVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 160 L~GktVGIIGlG---~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
+.|.+|+|||-+ ++..+++..+..| |++|.+..|..-.....+ ........++++.+++||||...
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 225 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQT 225 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEEC
Confidence 689999999975 6889999888887 999999998652211111 01123457899999999999884
No 309
>PLN02602 lactate dehydrogenase
Probab=94.28 E-value=0.31 Score=53.11 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=61.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------cccccCcee--cCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPSAARR--MDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~~~~~g~~~--~~sL~eLL~~ADVV~l~lPlT 229 (632)
++|+|||.|.||..+|-.|...|. ++..+|....... ..+...... ..+. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 699999999999999998886655 7999998764222 001111111 1244 4489999999986542
Q ss_pred h---hhH--------hhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 230 D---ETI--------QIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 230 ~---~T~--------~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
. .|+ .++. ...+....|.+++|+++ ..+|.-.
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt--NPvdv~t 161 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS--NPVDVLT 161 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CchHHHH
Confidence 1 122 2221 13445566889999998 3444433
No 310
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.24 E-value=0.086 Score=57.37 Aligned_cols=39 Identities=5% Similarity=-0.003 Sum_probs=35.2
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|++++|.|||.|.+|..+|..|...|. ++.++|...
T Consensus 23 q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 23 QQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 467999999999999999999999999998 788888764
No 311
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.24 E-value=0.065 Score=61.29 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=34.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.+.++++.|+|.|.+|++++..|...|++|++++|+..
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e 413 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE 413 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46789999999999999999999999999999998753
No 312
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.21 E-value=0.39 Score=51.69 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=63.5
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCC--CC-cccc---------cCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGK--GK-VTFP---------SAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm-------~V~~~dr~~~~--~~-~~~~---------~g~~~~~sL~eLL~~ADVV 222 (632)
++|+|||. |.||..+|-.|...|. ++..+|..... .. ...+ ....-.....+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 47999999 9999999998876555 79999985422 11 0000 0111123556889999999
Q ss_pred EEccCCCh---hh--------Hhhcc--HHHHhccC-CCcEEEEcCCChhhcHHHHHHH
Q 006758 223 SLHCAVTD---ET--------IQIIN--AECLQHIK-PGAFLVNTGSSQLLDDCAVKQL 267 (632)
Q Consensus 223 ~l~lPlT~---~T--------~~lI~--~~~L~~MK-~GAvLINvgRG~iVDe~AL~~A 267 (632)
+++.-... +| ..++. ...+.... |.+++|+++ ..+|.-+.+-.
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~ 139 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIAM 139 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHHH
Confidence 99875422 12 11221 12333344 588999986 56666554433
No 313
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.20 E-value=0.16 Score=53.85 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=58.8
Q ss_pred EEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCC-------cccc--c--CceecCCHHHHhccCCEEEEccCCChh
Q 006758 165 LGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGK-------VTFP--S--AARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG--m~V~~~dr~~~~~~-------~~~~--~--g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
|+|||.|.+|..+|..+...| .++..+|+...... .... . ......+ .+.+++||+|+++......
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 589999999999999998878 48999998764222 0000 0 1111233 4688999999999875321
Q ss_pred -----------hHhhcc--HHHHhccCCCcEEEEcCC
Q 006758 232 -----------TIQIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 232 -----------T~~lI~--~~~L~~MK~GAvLINvgR 255 (632)
+..++. ...+....|.+++||++-
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 222221 234445558999999983
No 314
>PLN00106 malate dehydrogenase
Probab=94.17 E-value=0.27 Score=53.05 Aligned_cols=96 Identities=17% Similarity=0.290 Sum_probs=61.7
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCCcccc-------cCce---ecCCHHHHhccCCEEEEccC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGKVTFP-------SAAR---RMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~~~-------~g~~---~~~sL~eLL~~ADVV~l~lP 227 (632)
...+|+|||. |.||..+|..|...+. ++..+|....... ..+ .... ..+++.+.+++||+|+++.-
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~-a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGV-AADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCee-EchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 4579999999 9999999999885444 8999998762221 111 1111 12345789999999999865
Q ss_pred CChh-----------hHhhcc--HHHHhccCCCcEEEEcCCCh
Q 006758 228 VTDE-----------TIQIIN--AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 228 lT~~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~ 257 (632)
.... +..++- .+.+....|.+++|+++---
T Consensus 96 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 96 VPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 4221 111110 12344455889999987633
No 315
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=94.14 E-value=0.21 Score=53.61 Aligned_cols=96 Identities=13% Similarity=0.272 Sum_probs=61.3
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCC-ccccc-----Cceec---CCHHHHhccCCEEEEccCCChh
Q 006758 164 VLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGK-VTFPS-----AARRM---DTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafGm--~V~~~dr~~~~~~-~~~~~-----g~~~~---~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
+|+|||. |.||..+|-.|...+. ++..+|....... ..+.. ..... +++.+.+++||+|+++.-....
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 9999999998875554 8999998762221 00111 11111 1357899999999998765321
Q ss_pred -----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcH
Q 006758 232 -----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDD 261 (632)
Q Consensus 232 -----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe 261 (632)
+..++. ...+..-.|.+++|+++- ++|.
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv 121 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS 121 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence 222221 124444568999999875 4554
No 316
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.11 E-value=0.063 Score=56.90 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=48.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc---ccccCc--eecCCHHHHh--ccCCEEEEccCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV---TFPSAA--RRMDTLNDLL--AASDVISLHCAV 228 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~---~~~~g~--~~~~sL~eLL--~~ADVV~l~lPl 228 (632)
+.|+++.|+|.|-.+++++..|+..|+ +|.+++|+....+. .+.... .....+.++- .++|+||++.|+
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~ 200 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPV 200 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCC
Confidence 579999999999999999999999996 89999998754331 111100 0112222221 168999999997
No 317
>PRK12862 malic enzyme; Reviewed
Probab=94.08 E-value=0.41 Score=57.20 Aligned_cols=180 Identities=17% Similarity=0.203 Sum_probs=116.5
Q ss_pred cCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHh
Q 006758 103 LGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSL 182 (632)
Q Consensus 103 rGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~Lk 182 (632)
.+|+++|.+--. +|=-+++.+++.+|-. .+.+.+.+|.|+|.|.-|..+|+.+.
T Consensus 160 ~~ip~f~DD~~G---Ta~v~la~l~~a~~~~-----------------------~~~~~~~~iv~~GaGaag~~~a~~l~ 213 (763)
T PRK12862 160 MKIPVFHDDQHG---TAIIVAAALLNGLKLV-----------------------GKDIEDVKLVASGAGAAALACLDLLV 213 (763)
T ss_pred CCCceEecCccc---HHHHHHHHHHHHHHHh-----------------------CCChhhcEEEEEChhHHHHHHHHHHH
Confidence 479999985533 3444677777776521 13478899999999999999999999
Q ss_pred hCCC---EEEEECCCCC-----CC-----CcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcE
Q 006758 183 SFKM---SVLYFDVPEG-----KG-----KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249 (632)
Q Consensus 183 afGm---~V~~~dr~~~-----~~-----~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAv 249 (632)
..|+ +++.+|+..- .. +..+... ....+|.|++..+|+++=.-- -++|+++.++.|.+..+
T Consensus 214 ~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~-~~~~~l~e~~~~~~v~iG~s~-----~g~~~~~~v~~M~~~pi 287 (763)
T PRK12862 214 SLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQK-TDARTLAEVIEGADVFLGLSA-----AGVLKPEMVKKMAPRPL 287 (763)
T ss_pred HcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhh-cccCCHHHHHcCCCEEEEcCC-----CCCCCHHHHHHhccCCE
Confidence 9999 7999997631 10 0111111 123589999999999976432 48999999999999999
Q ss_pred EEEcCCChhhcHHHHHHHHHc--CCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccH-----HHHHHHHHHHHHHH
Q 006758 250 LVNTGSSQLLDDCAVKQLLID--GTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSE-----EVWMEIRDKAISVL 322 (632)
Q Consensus 250 LINvgRG~iVDe~AL~~AL~s--g~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~-----ea~~~~~~~a~~nL 322 (632)
+.=.+.-.. |.--.+|.+- |.|.+-+- ...|- ...|+++=|-++-..- ..-++|...+++-|
T Consensus 288 ifalsNP~~--E~~p~~a~~~~~~~i~atGr--s~~p~-------Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~al 356 (763)
T PRK12862 288 IFALANPTP--EILPEEARAVRPDAIIATGR--SDYPN-------QVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAI 356 (763)
T ss_pred EEeCCCCcc--cCCHHHHHHhcCCEEEEECC--cCCCC-------cccceeeccchhhhHHhcCCeeCCHHHHHHHHHHH
Confidence 999988664 3222333333 33433221 11121 4568888887543221 12345555555666
Q ss_pred HHH
Q 006758 323 QTF 325 (632)
Q Consensus 323 ~~f 325 (632)
..+
T Consensus 357 a~~ 359 (763)
T PRK12862 357 AEL 359 (763)
T ss_pred Hhc
Confidence 554
No 318
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=94.07 E-value=1.5 Score=49.06 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=117.4
Q ss_pred HhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHH
Q 006758 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATR 180 (632)
Q Consensus 101 ~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~ 180 (632)
.+..|+|+|.+--. +|=-+++.+|+.+|-. .+.|+..+|.|.|.|.-|-.+|+.
T Consensus 164 ~~~~IPvFhDDqqG---Taiv~lA~llnalk~~-----------------------gk~l~d~kiv~~GAGAAgiaia~~ 217 (432)
T COG0281 164 YRMNIPVFHDDQQG---TAIVTLAALLNALKLT-----------------------GKKLKDQKIVINGAGAAGIAIADL 217 (432)
T ss_pred hcCCCCcccccccH---HHHHHHHHHHHHHHHh-----------------------CCCccceEEEEeCCcHHHHHHHHH
Confidence 34579999986533 3444677777666421 135899999999999999999999
Q ss_pred HhhCCC---EEEEECCCCCCCC--cc--cc-cCce-------ecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccC
Q 006758 181 SLSFKM---SVLYFDVPEGKGK--VT--FP-SAAR-------RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIK 245 (632)
Q Consensus 181 LkafGm---~V~~~dr~~~~~~--~~--~~-~g~~-------~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK 245 (632)
+.+.|+ +|+.+|+..--.+ .. .. .... ...+ ++.+..+|+++-+-- .|+|.++.++.|.
T Consensus 218 l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~~Ma 291 (432)
T COG0281 218 LVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVSG-----VGAFTEEMVKEMA 291 (432)
T ss_pred HHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcCC-----CCCcCHHHHHHhc
Confidence 999999 6999998741111 00 00 0000 0111 457889999876632 2999999999999
Q ss_pred CCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHH-----HHHHHHHHHHH
Q 006758 246 PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEE-----VWMEIRDKAIS 320 (632)
Q Consensus 246 ~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~e-----a~~~~~~~a~~ 320 (632)
+.+++.=.+.-.. +.+-+.+..-. -++++=.+-.|.++. +..|+++=|.+.-..-. .-++|...+++
T Consensus 292 ~~PiIfalaNP~p---Ei~Pe~a~~~~-~~aaivaTGrsd~Pn----QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~ 363 (432)
T COG0281 292 KHPIIFALANPTP---EITPEDAKEWG-DGAAIVATGRSDYPN----QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAE 363 (432)
T ss_pred cCCEEeecCCCCc---cCCHHHHhhcC-CCCEEEEeCCCCCcc----cccceeEcchhhhhhHhhccccCCHHHHHHHHH
Confidence 9999998887653 22222211111 113333344344333 67799999986543222 23566666777
Q ss_pred HHHHH
Q 006758 321 VLQTF 325 (632)
Q Consensus 321 nL~~f 325 (632)
-|..+
T Consensus 364 AiA~~ 368 (432)
T COG0281 364 AIADL 368 (432)
T ss_pred HHHhh
Confidence 77775
No 319
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.02 E-value=0.15 Score=56.47 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=54.0
Q ss_pred ccccCcEEEEEeC----------ChhhHHHHHHHhhCC-CEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEcc
Q 006758 158 RRCRGLVLGIVGR----------SASARALATRSLSFK-MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 158 ~~L~GktVGIIGl----------G~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
.++.|++|+|+|+ ..-+..+++.|+..| ++|.+|||........+.. .....++++.+..||+|+++.
T Consensus 316 ~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~-~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 316 KRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDG-LVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred cCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccC-ceeeCCHHHHHhCCCEEEECC
Confidence 3578999999998 557789999999996 9999999985332211111 223478999999999999998
Q ss_pred CC
Q 006758 227 AV 228 (632)
Q Consensus 227 Pl 228 (632)
+.
T Consensus 395 ~~ 396 (415)
T PRK11064 395 DH 396 (415)
T ss_pred CC
Confidence 86
No 320
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.00 E-value=0.061 Score=56.82 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=47.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc-----cCc--eecCC---HHHHhccCCEEEEccCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP-----SAA--RRMDT---LNDLLAASDVISLHCAV 228 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~-----~g~--~~~~s---L~eLL~~ADVV~l~lPl 228 (632)
+.|+++.|+|.|..|++++-.|...|+ +|.+++|+....+.... .+. ....+ +.+.+..+|+|+.+.|.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~ 204 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence 468899999999999999999999998 79999998643221100 000 11112 23456778888888885
No 321
>PRK07411 hypothetical protein; Validated
Probab=93.99 E-value=0.1 Score=57.45 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=35.1
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
...|+..+|.|||+|.+|..+|..|...|. ++..+|...
T Consensus 33 q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 33 QKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred HHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 457999999999999999999999999998 788888763
No 322
>PRK11579 putative oxidoreductase; Provisional
Probab=93.96 E-value=0.092 Score=56.26 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=46.1
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEEE-ECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARA-LATRSLSF-KMSVLY-FDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-Gm~V~~-~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~ 230 (632)
.+|||||+|.||+. .+..++.. +++|.+ +|++.......+ .+...+.+++++++ +.|+|++++|...
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~-~~~~~~~~~~ell~~~~vD~V~I~tp~~~ 76 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADW-PTVTVVSEPQHLFNDPNIDLIVIPTPNDT 76 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhC-CCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 47999999999985 45655543 788764 677643222112 12345689999996 4799999999643
No 323
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=93.93 E-value=0.32 Score=52.68 Aligned_cols=95 Identities=11% Similarity=0.089 Sum_probs=63.6
Q ss_pred ccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCc-------cc--ccC--ceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKV-------TF--PSA--ARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~~~-------~~--~~g--~~~~~sL~eLL~~ADVV~l~l 226 (632)
+.|++|++||=+ ++..+++..+..||++|.++.|..-.... .+ ..| +....++++.+++||||..-+
T Consensus 154 l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~ 233 (334)
T PRK01713 154 LSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDV 233 (334)
T ss_pred cCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 689999999986 57888888889999999999986422110 00 012 334689999999999998742
Q ss_pred ----CCCh---hhH------hhccHHHHhcc-CCCcEEEEcC
Q 006758 227 ----AVTD---ETI------QIINAECLQHI-KPGAFLVNTG 254 (632)
Q Consensus 227 ----PlT~---~T~------~lI~~~~L~~M-K~GAvLINvg 254 (632)
.... +.+ -.|+.+.++.. |++++|..+.
T Consensus 234 w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 234 WVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred eeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 1100 111 12566777765 6777777654
No 324
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.91 E-value=0.51 Score=52.10 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=68.7
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---c-ccccCceec--CCHHHHhcc-CCEEEEccCCChhh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---V-TFPSAARRM--DTLNDLLAA-SDVISLHCAVTDET 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~---~-~~~~g~~~~--~sL~eLL~~-ADVV~l~lPlT~~T 232 (632)
+.|+++.|+|.|.+|.++|+.|+..|++|.++|....... . ....+.... ....+++.. .|+|+..--..+..
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~ 82 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN 82 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence 6799999999999999999999999999999997642211 1 111122221 123344444 89888865222211
Q ss_pred ----------HhhccHHHH-hcc-CCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 233 ----------IQIINAECL-QHI-KPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 233 ----------~~lI~~~~L-~~M-K~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
..++....| ..+ +...+-|--+.|+..-..-|...|+.
T Consensus 83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 122333323 233 33456666667888777777777764
No 325
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.88 E-value=0.1 Score=55.59 Aligned_cols=34 Identities=9% Similarity=-0.113 Sum_probs=31.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
.|.+|.|+|.|.||...++.++..|++|++++++
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~ 205 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR 205 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 6889999999999999999999999999999874
No 326
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.87 E-value=0.13 Score=54.64 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=54.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCceec-----CCHHHHhc---cCCEEEEccCCChh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRM-----DTLNDLLA---ASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~~-----~sL~eLL~---~ADVV~l~lPlT~~ 231 (632)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++....+.....|+..+ .++.++.. ..|+|+-++... .
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~ 247 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-S 247 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-H
Confidence 68999999999999999999999999 68888877543332122222111 12233222 256666665421 1
Q ss_pred hHhhccHHHHhccCCCcEEEEcCC
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
+ + ...+..+++|..+|.+|-
T Consensus 248 ~---~-~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 248 S---I-NTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H---H-HHHHHHhhcCCEEEEEcc
Confidence 1 1 234555666666666654
No 327
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.87 E-value=0.16 Score=53.84 Aligned_cols=113 Identities=14% Similarity=0.089 Sum_probs=70.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----c---cc-ccCc-ee--c-CCHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----V---TF-PSAA-RR--M-DTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~----~---~~-~~g~-~~--~-~sL~eLL~~ADVV~l~lPlT~ 230 (632)
++|+|||.|.||.-+|-+|...|.+|..++|.....+ . .. ..+. .. . ..-.+.+...|+|++++=..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 4699999999999999999999999999998642111 0 00 0010 00 0 11122345789999998653
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEe
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCAL 278 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaL 278 (632)
++...+ +.....+.+++.+|-.--|= -.++.+.+.+-..++.++..
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNGv-~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNGL-GSQDAVAARVPHARCIFASS 127 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCCC-CCHHHHHHhCCCCcEEEEEe
Confidence 344443 34555677888888775552 33455667766555554433
No 328
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.85 E-value=0.12 Score=56.51 Aligned_cols=38 Identities=13% Similarity=0.036 Sum_probs=34.9
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~ 194 (632)
+..|.+++|.|||.|.+|..+|..|...|+ ++.++|+.
T Consensus 130 q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 130 QRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 356899999999999999999999999998 79999986
No 329
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.79 E-value=0.14 Score=56.12 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=35.1
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~ 194 (632)
+..|.+.+|.|||+|.+|..+|..|...|+ ++.++|..
T Consensus 36 q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 36 QERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 467999999999999999999999999998 89999976
No 330
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.77 E-value=0.26 Score=52.66 Aligned_cols=92 Identities=17% Similarity=0.267 Sum_probs=56.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------ccccc--CceecCCHHHHhccCCEEEEccCCCh
Q 006758 164 VLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPS--AARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~~~~~--g~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
+|+|||.|.||..+|-.|...|. ++..+|....... ..+.. ...-...-.+.+++||+|+++.-...
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~~ 80 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCCC
Confidence 58999999999999998876555 8999998653222 11110 11111233578899999999875421
Q ss_pred ---hh---Hhhc--cH-------HHHhccCCCcEEEEcCC
Q 006758 231 ---ET---IQII--NA-------ECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 231 ---~T---~~lI--~~-------~~L~~MK~GAvLINvgR 255 (632)
.| ..++ |. ..+..-.|.+++|.++-
T Consensus 81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 23 2222 11 23344457888887653
No 331
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.77 E-value=0.15 Score=50.04 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=29.0
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+|+|||.|.+|..+|..|...|+ ++.++|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 599999764
No 332
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=93.71 E-value=0.13 Score=56.74 Aligned_cols=39 Identities=5% Similarity=0.025 Sum_probs=34.8
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|++.+|.|||+|.+|..+|..|...|. ++.++|...
T Consensus 37 q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 37 QKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred HHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 356899999999999999999999999888 788998763
No 333
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.68 E-value=0.12 Score=58.15 Aligned_cols=92 Identities=11% Similarity=-0.053 Sum_probs=62.0
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-cC-c--eecCCHHHHhccCCEEEEccCCChhhH
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SA-A--RRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-~g-~--~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
.+|.|++|.|||-|.+|..=++.|..+|++|.++.+........+. .+ . ..-.-..+.+..+++|+.++....
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~--- 84 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA--- 84 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH---
Confidence 5799999999999999999999999999999999886532211111 01 0 111112355678888877765422
Q ss_pred hhccHHHHhccCCCcEEEEcC
Q 006758 234 QIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvg 254 (632)
+|.......+...++||++
T Consensus 85 --~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 --VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred --HhHHHHHHHHHcCcEEEEC
Confidence 5555556666666888864
No 334
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.65 E-value=0.33 Score=52.38 Aligned_cols=68 Identities=10% Similarity=0.190 Sum_probs=46.8
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhh--CCCEEEEECCCCCCCCcccc-------cCceec---CCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGR-SASARALATRSLS--FKMSVLYFDVPEGKGKVTFP-------SAARRM---DTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~Lka--fGm~V~~~dr~~~~~~~~~~-------~g~~~~---~sL~eLL~~ADVV~l~l 226 (632)
++.++|+|||. |.||..+|..|.. ..-++..+|....... ..+ ...... .+..+.+++||+|++++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~-a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGV-AADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCccc-ccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 56779999999 9999999999884 4458999998432221 111 011112 12268899999999887
Q ss_pred CC
Q 006758 227 AV 228 (632)
Q Consensus 227 Pl 228 (632)
-.
T Consensus 85 G~ 86 (321)
T PTZ00325 85 GV 86 (321)
T ss_pred CC
Confidence 65
No 335
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.65 E-value=0.095 Score=64.27 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=46.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhC-CCE-------------EEEECCCCCCCCc---ccccC---cee-cCCHHHH---h
Q 006758 161 RGLVLGIVGRSASARALATRSLSF-KMS-------------VLYFDVPEGKGKV---TFPSA---ARR-MDTLNDL---L 216 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lkaf-Gm~-------------V~~~dr~~~~~~~---~~~~g---~~~-~~sL~eL---L 216 (632)
+.++|+|||.|.||+.+|+.|... +++ |.+.|++....+. .++ + +.. +.+.+++ +
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~-~~~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE-NAEAVQLDVSDSESLLKYV 646 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC-CCceEEeecCCHHHHHHhh
Confidence 467899999999999999999754 334 8888987643321 111 1 111 3344444 4
Q ss_pred ccCCEEEEccCC
Q 006758 217 AASDVISLHCAV 228 (632)
Q Consensus 217 ~~ADVV~l~lPl 228 (632)
..+|+|++++|.
T Consensus 647 ~~~DaVIsalP~ 658 (1042)
T PLN02819 647 SQVDVVISLLPA 658 (1042)
T ss_pred cCCCEEEECCCc
Confidence 689999999996
No 336
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=93.59 E-value=0.19 Score=58.24 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=52.2
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce--ecCC---HHHHhccCCEEEEccCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDT---LNDLLAASDVISLHCAVT 229 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~--~~~s---L~eLL~~ADVV~l~lPlT 229 (632)
+.....++|||||-|..|+.++..++.+|++|+++|+++......+..... .+.+ +.++...+|+|+......
T Consensus 17 ~~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 17 VHGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 345788999999999999999999999999999999876432211111111 1233 566778899997765543
No 337
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=93.46 E-value=0.24 Score=53.70 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=50.6
Q ss_pred ccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccCCEEEEc
Q 006758 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~ADVV~l~ 225 (632)
+.|++|++||-+ ++..+++..+..||++|.++.|..-.....+ ..+ .....++++++++||||..-
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 689999999997 7889999999999999999998653221100 012 33457899999999999884
No 338
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.42 E-value=0.15 Score=57.50 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=69.0
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-ccc-cc--Cceec--CCHHHHhccCCEEEEc--cCCC--
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTF-PS--AARRM--DTLNDLLAASDVISLH--CAVT-- 229 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~-~~--g~~~~--~sL~eLL~~ADVV~l~--lPlT-- 229 (632)
+.+++|+|+|+|.+|.++|+.|+..|.+|.++|....... ..+ .. ++... ....+.+..+|+|+.. +|.+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~ 84 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA 84 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence 5688999999999999999999999999999997542211 011 11 22211 1123456689999996 4443
Q ss_pred ---hh-------hHhhccH-HHHhc-c--------CCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 006758 230 ---DE-------TIQIINA-ECLQH-I--------KPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 230 ---~~-------T~~lI~~-~~L~~-M--------K~GAvLINvgRG~iVDe~AL~~AL~sg~I 273 (632)
|. ...++.. +.+.. + ++-.+-|--+-|+.--..-|...|+....
T Consensus 85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~ 148 (498)
T PRK02006 85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGK 148 (498)
T ss_pred ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 21 1122322 22211 2 22345666667887766667777775433
No 339
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.41 E-value=2.2 Score=43.94 Aligned_cols=39 Identities=13% Similarity=-0.020 Sum_probs=35.3
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
-++.|++|.|||-|.+|..=++.|..+|++|.++++...
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 457899999999999999999999999999999998753
No 340
>PLN02342 ornithine carbamoyltransferase
Probab=93.38 E-value=0.4 Score=52.35 Aligned_cols=67 Identities=7% Similarity=-0.003 Sum_probs=49.6
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-------ccc-CceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT-------FPS-AARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-------~~~-g~~~~~sL~eLL~~ADVV~l~l 226 (632)
+.|++|++||= .++..+++..+..||++|.++.|..-..... ... ......++++.+++||||..-.
T Consensus 192 l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~ 267 (348)
T PLN02342 192 LEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDV 267 (348)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECC
Confidence 78999999997 3577788888889999999999865322110 111 2344688999999999998863
No 341
>PRK07806 short chain dehydrogenase; Provisional
Probab=93.35 E-value=0.24 Score=49.28 Aligned_cols=37 Identities=11% Similarity=-0.064 Sum_probs=32.8
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.|+++.|.|. |.||+.+++.|...|++|++++++.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367899999996 8999999999999999999988764
No 342
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=93.34 E-value=0.59 Score=53.68 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=106.6
Q ss_pred cccCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.+.|+...+||...| |..+|..|+-...+|.++-... .+|.+.+.++|+|+.++-- .+++-
T Consensus 159 ~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSKT--------------~~lae~v~~ADIvIvAiG~----PefVK 220 (935)
T KOG4230|consen 159 FVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSKT--------------RNLAEKVSRADIVIVAIGQ----PEFVK 220 (935)
T ss_pred ccccceeEEEecccccCChHHHHHHhcCceEEEecCCC--------------ccHHHHhccCCEEEEEcCC----cceee
Confidence 378999999999875 8999999999999999885432 4788999999999999864 34554
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC-CCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA-EGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRD 316 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf-E~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~ 316 (632)
. .++|||+++|++|---+-|.. -++|.- +.=||- |+-.. ---.|||-=||.-.-...-+.+
T Consensus 221 g---dWiKpGavVIDvGINyvpD~~-----Kksg~k--lvGDVdfe~Ake--------vas~ITPVPGGVGPMTVAMLmq 282 (935)
T KOG4230|consen 221 G---DWIKPGAVVIDVGINYVPDPS-----KKSGFK--LVGDVDFESAKE--------VASFITPVPGGVGPMTVAMLMQ 282 (935)
T ss_pred c---ccccCCcEEEEccccccCCCC-----Ccccce--EeeecchHhhhh--------hhhccccCCCCcchHHHHHHHH
Confidence 4 458899999999976555432 122221 345663 32110 0124888867765544444444
Q ss_pred HHHHHHHHHHHcC----CCCCccccCCcCccCcCcchhhhhhhc
Q 006758 317 KAISVLQTFFFDG----VIPKNAISDTEGCENEIDDEIEQYNKL 356 (632)
Q Consensus 317 ~a~~nL~~fL~~G----~~p~nvVn~~~~~~~~~~~~~~~~~~~ 356 (632)
..++.-++++..- +++.+.++....-+|+++--..|.+|.
T Consensus 283 NtveaAKR~r~es~~~~~i~~~pl~l~tpvpsdidisrsq~pk~ 326 (935)
T KOG4230|consen 283 NTVEAAKRQREESKKKRKIDLLPLKLKTPVPSDIDISRSQEPKL 326 (935)
T ss_pred HHHHHHHHHHHhccccCcCCCCccccCCCCCcccchhhccCcch
Confidence 5555555554322 244566666667777766666666553
No 343
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.30 E-value=0.13 Score=57.47 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=70.6
Q ss_pred ccCcEEEEEeCChhhHH-HHHHHhhCCCEEEEECCCCCCCCccc-ccCceec-CCHHHHhccCCEEEEccCCChh---hH
Q 006758 160 CRGLVLGIVGRSASARA-LATRSLSFKMSVLYFDVPEGKGKVTF-PSAARRM-DTLNDLLAASDVISLHCAVTDE---TI 233 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~-vA~~LkafGm~V~~~dr~~~~~~~~~-~~g~~~~-~sL~eLL~~ADVV~l~lPlT~~---T~ 233 (632)
..+++|.|||+|.+|.+ +|+.|+..|++|.++|.........+ ..++... ..-.+.+..+|+|+..--..+. ..
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 57789999999999999 79999999999999997653211111 1122221 1223456689998875433222 11
Q ss_pred -------hhccHHHH-hcc-CC-CcEEEEcCCChhhcHHHHHHHHHcCC
Q 006758 234 -------QIINAECL-QHI-KP-GAFLVNTGSSQLLDDCAVKQLLIDGT 272 (632)
Q Consensus 234 -------~lI~~~~L-~~M-K~-GAvLINvgRG~iVDe~AL~~AL~sg~ 272 (632)
.+++.-.| ..+ ++ -.+-|--+.|+.--..-+...|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 23444333 333 32 35666666798887777777777543
No 344
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.27 E-value=0.31 Score=52.28 Aligned_cols=93 Identities=15% Similarity=0.263 Sum_probs=59.2
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCC-ccccc-----Cceec---CCHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGK-VTFPS-----AARRM---DTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm--~V~~~dr~~~~~~-~~~~~-----g~~~~---~sL~eLL~~ADVV~l~lPlT~ 230 (632)
.+|+|||. |.+|..+|-.|..-|+ ++..+|....... ..+.. ..... +++.+.+++||+|+++.-...
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 37999999 9999999999886664 8999998721111 00111 11111 235688999999999875522
Q ss_pred ---hhH--------hhcc--HHHHhccCCCcEEEEcCC
Q 006758 231 ---ETI--------QIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 231 ---~T~--------~lI~--~~~L~~MK~GAvLINvgR 255 (632)
+|| .++. .+.+..-.|.+++||++-
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN 118 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN 118 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 121 1221 124444568899999876
No 345
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.24 E-value=0.2 Score=49.48 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=33.4
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
+.|++|.|.|. |.||..+++.+...|++|++.+++..
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 68899999997 77999999999999999999998753
No 346
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.24 E-value=0.19 Score=58.15 Aligned_cols=70 Identities=9% Similarity=0.015 Sum_probs=49.2
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----------------------cccCceecCCHHHHh
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT----------------------FPSAARRMDTLNDLL 216 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~----------------------~~~g~~~~~sL~eLL 216 (632)
-.|++|.|.|. |.||+.+++.|...|++|.+++|+....... +...+...+++.+.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 37889999996 9999999999999999999998875332100 000111123455668
Q ss_pred ccCCEEEEccCCC
Q 006758 217 AASDVISLHCAVT 229 (632)
Q Consensus 217 ~~ADVV~l~lPlT 229 (632)
..+|+||+++...
T Consensus 158 ggiDiVVn~AG~~ 170 (576)
T PLN03209 158 GNASVVICCIGAS 170 (576)
T ss_pred cCCCEEEEccccc
Confidence 8999999987543
No 347
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.23 E-value=0.73 Score=48.80 Aligned_cols=105 Identities=19% Similarity=0.235 Sum_probs=74.2
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH--------
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI-------- 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~-------- 233 (632)
|++++|||--.=-..+++.|...|++|..|.-..... .+. ++......++.+.++|+|++-+|.+.+.-
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~--~~~-~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~ 77 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLED--GFT-GAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSN 77 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEecccccc--ccc-cceeecchhhhhccCCEEEECCccccCCceEeccccc
Confidence 6789999998888899999999999988886432111 122 44455566667999999999999776521
Q ss_pred --hhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 234 --QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 234 --~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
-.++++.|+.|+++++ +-+|.+ ...|.++.++..|.
T Consensus 78 ~~~~l~~~~l~~~~~~~~-~~~G~~----~~~l~~~a~~~gi~ 115 (287)
T TIGR02853 78 EKVVLTPELLESTKGHCT-IYVGIS----NPYLEQLAADAGVK 115 (287)
T ss_pred CCccccHHHHHhcCCCCE-EEEecC----CHHHHHHHHHCCCe
Confidence 1256889999998665 555543 34455466666665
No 348
>PRK06270 homoserine dehydrogenase; Provisional
Probab=93.20 E-value=0.43 Score=51.62 Aligned_cols=111 Identities=14% Similarity=0.194 Sum_probs=62.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhC----------CCEEEEE-CCCCC----CC-Cc----c--cccC-------ceecCCHH
Q 006758 163 LVLGIVGRSASARALATRSLSF----------KMSVLYF-DVPEG----KG-KV----T--FPSA-------ARRMDTLN 213 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf----------Gm~V~~~-dr~~~----~~-~~----~--~~~g-------~~~~~sL~ 213 (632)
.+|||+|+|.||+.+++.+... +++|.++ |+... .. .. . ...+ .....+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 3699999999999999998754 5676544 54311 00 00 0 0001 01124788
Q ss_pred HHhc--cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChh-hcHHHHHHHHHcCCc
Q 006758 214 DLLA--ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL-LDDCAVKQLLIDGTL 273 (632)
Q Consensus 214 eLL~--~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~i-VDe~AL~~AL~sg~I 273 (632)
+++. ..|+|+.++|....+...--.-....|+.|.-+|-..-+.+ ..-.+|.++.++..+
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 8884 67999999996544321111223455666666655433333 234567776666544
No 349
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.17 E-value=0.18 Score=55.45 Aligned_cols=92 Identities=11% Similarity=0.017 Sum_probs=56.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--cCc-------eecCCHH-HHhccCCEEEEccCCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--SAA-------RRMDTLN-DLLAASDVISLHCAVT 229 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~--~g~-------~~~~sL~-eLL~~ADVV~l~lPlT 229 (632)
+..+++.|+|+|.+|+.+++.|...|.+|+++|.++........ .+. .....|. .-+.++|.|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 34688999999999999999999999999999987643221000 011 1112232 2356789888887754
Q ss_pred hhhHhhccHHHHhccCCCcEEEEc
Q 006758 230 DETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
. .+++-......+.+..+++-+
T Consensus 309 ~--~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 309 E--ANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred H--HHHHHHHHHHHhCCCeEEEEE
Confidence 3 234333344445444444433
No 350
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.14 E-value=0.56 Score=43.77 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=29.4
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+|.|||+|.+|..+|+.|...|+ ++.++|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999999 799999774
No 351
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.14 E-value=0.25 Score=49.33 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=34.9
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
...|++.+|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 14 q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 14 QNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred HHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 356899999999999999999999999998 588998764
No 352
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=93.11 E-value=0.25 Score=57.68 Aligned_cols=120 Identities=17% Similarity=0.288 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEEC
Q 006758 114 RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFD 192 (632)
Q Consensus 114 na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~d 192 (632)
.....||.++-|=|-|+| |.-- +. .+...|++.+|.|||.|.+|..+|+.|.+.|+ ++.++|
T Consensus 307 dP~~la~~avdlnlkLmk--------------WRll-P~--l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD 369 (664)
T TIGR01381 307 DPKRLAERSVDLNLKLMK--------------WRLH-PD--LQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVD 369 (664)
T ss_pred CHHHHHHHHHHHHHHHHh--------------hhcC-Ch--hhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEc
Confidence 456778877777665553 3211 00 12246899999999999999999999999998 688888
Q ss_pred CCCCC------------------CC----------cccccCc-----e-e-------c------------CCHHHHhccC
Q 006758 193 VPEGK------------------GK----------VTFPSAA-----R-R-------M------------DTLNDLLAAS 219 (632)
Q Consensus 193 r~~~~------------------~~----------~~~~~g~-----~-~-------~------------~sL~eLL~~A 219 (632)
...-. +. ......+ . . + ..+.+++.++
T Consensus 370 ~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~ 449 (664)
T TIGR01381 370 NGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDH 449 (664)
T ss_pred CCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhC
Confidence 54210 00 0000000 0 0 1 2366899999
Q ss_pred CEEEEccCCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 220 DVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
|+|+.++- +.++|-+++...... +..+||.+
T Consensus 450 DvV~d~tD-n~esR~L~n~~c~~~---~kplI~aA 480 (664)
T TIGR01381 450 DVVFLLLD-SREARWLPTVLCSRH---KKIAISAA 480 (664)
T ss_pred CEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEE
Confidence 99999875 577888887655543 45666654
No 353
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=93.10 E-value=0.36 Score=54.03 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=50.3
Q ss_pred ccCcEEEEEeCC---hhhHHHHHHHhhC-CCEEEEECCCCCCCCccc-------ccCceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRS---ASARALATRSLSF-KMSVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG---~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
+.|++|++||-+ ++..+++..+..+ ||+|.++.|..-.....+ ...+....++++.+++||||....
T Consensus 239 l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 239 VDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred cCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 789999999994 8899999888876 999999998653211111 112334689999999999998843
No 354
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.07 E-value=0.5 Score=50.88 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=60.9
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCC-------CEEEEECCCCCC--CC-cccc---------cCceecCCHHHHhccCCEEE
Q 006758 164 VLGIVGR-SASARALATRSLSFK-------MSVLYFDVPEGK--GK-VTFP---------SAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafG-------m~V~~~dr~~~~--~~-~~~~---------~g~~~~~sL~eLL~~ADVV~ 223 (632)
+|+|+|. |.+|..+|..|...+ .+|..+|+.... .. ...+ .......++.+.+++||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 5999999 999999999988644 489999985422 11 0010 01112356778899999999
Q ss_pred EccCCChh---hH-hhc--cH-------HHHhcc-CCCcEEEEcCCChhhcHHH
Q 006758 224 LHCAVTDE---TI-QII--NA-------ECLQHI-KPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 224 l~lPlT~~---T~-~lI--~~-------~~L~~M-K~GAvLINvgRG~iVDe~A 263 (632)
.+.-.... ++ .++ |. ..+... +|++++|.++ ..+|.-.
T Consensus 84 ~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 135 (325)
T cd01336 84 LVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTNA 135 (325)
T ss_pred EeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHHH
Confidence 87654321 11 111 11 234444 5788999887 3454444
No 355
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=93.05 E-value=0.51 Score=50.92 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=61.6
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCC--CC-c---------ccccCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGK--GK-V---------TFPSAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm-------~V~~~dr~~~~--~~-~---------~~~~g~~~~~sL~eLL~~ADVV 222 (632)
.+|+|||. |.+|..+|-.|...|. ++..+|..... .. . .+.....-.....+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 47999998 9999999999886664 79999985421 11 0 0000111123556889999999
Q ss_pred EEccCCCh---hhHh--------hcc--HHHHhccCC-CcEEEEcCCChhhcHHH
Q 006758 223 SLHCAVTD---ETIQ--------IIN--AECLQHIKP-GAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 223 ~l~lPlT~---~T~~--------lI~--~~~L~~MK~-GAvLINvgRG~iVDe~A 263 (632)
+++.-... +|+. ++. ...+....| .+++|.++ ..+|.-.
T Consensus 84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 99875422 1221 221 123344444 89999986 5555544
No 356
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=93.04 E-value=0.39 Score=42.38 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=52.0
Q ss_pred CcEEEEEeCChhhHHHHHHHh-hCCCE-EEEECCCCCCCCcccccCceecCCHHHHhcc--CCEEEEccCCChhhHhhcc
Q 006758 162 GLVLGIVGRSASARALATRSL-SFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lk-afGm~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--ADVV~l~lPlT~~T~~lI~ 237 (632)
..++.|+|+|+.|++++.... ..|+. +.++|.++...-... .+..-+.+++++... .|+.++++|. +.....+.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~-~~a~~~~~ 80 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPA-EAAQEVAD 80 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-H-HHHHHHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCH-HHHHHHHH
Confidence 457999999999999985444 44553 455666654332112 233444577777776 9999999995 33444444
Q ss_pred HHHHhccCCCcEEEEcC
Q 006758 238 AECLQHIKPGAFLVNTG 254 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvg 254 (632)
+-.-+.+| .++|.+
T Consensus 81 ~~~~~gIk---~i~nft 94 (96)
T PF02629_consen 81 ELVEAGIK---GIVNFT 94 (96)
T ss_dssp HHHHTT-S---EEEEES
T ss_pred HHHHcCCC---EEEEeC
Confidence 33333333 445543
No 357
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.00 E-value=0.67 Score=49.96 Aligned_cols=101 Identities=19% Similarity=0.180 Sum_probs=62.6
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCC--CCCC-cc--ccc-------CceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGR-SASARALATRSLSFKM-------SVLYFDVPE--GKGK-VT--FPS-------AARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm-------~V~~~dr~~--~~~~-~~--~~~-------g~~~~~sL~eLL~~ADVV 222 (632)
.+|+|+|. |.||..+|..|..-|+ ++..+|... ...+ .. ... ...-.....+.+++||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 37999999 9999999998875443 599999875 2221 00 000 111114667899999999
Q ss_pred EEccCCCh---hh--------Hhhcc--HHHHhcc-CCCcEEEEcCCChhhcHHHHH
Q 006758 223 SLHCAVTD---ET--------IQIIN--AECLQHI-KPGAFLVNTGSSQLLDDCAVK 265 (632)
Q Consensus 223 ~l~lPlT~---~T--------~~lI~--~~~L~~M-K~GAvLINvgRG~iVDe~AL~ 265 (632)
+++.-... +| ..++. ...+... +|.+++|.++ ..+|.-+.+
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 135 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALI 135 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHH
Confidence 98765422 12 11221 1244445 5888888885 566655544
No 358
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=92.94 E-value=0.61 Score=48.77 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=44.5
Q ss_pred cEEEEEe-CChhhHHHHHHHhh-CCCEEEE-ECCCCC-C-CCc--cc----ccCceecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVG-RSASARALATRSLS-FKMSVLY-FDVPEG-K-GKV--TF----PSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lka-fGm~V~~-~dr~~~-~-~~~--~~----~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
.+|+|+| +|.||+.+++.+.. -++++.+ +|+... . ... .. ..++..+.+++++...+|+|+.+.|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence 3799999 79999999999885 5888666 564321 1 100 00 1234445788888667899999885
No 359
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=92.93 E-value=0.16 Score=54.46 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=44.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc--eecCC---HHHHhccCCEEEEc
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--RRMDT---LNDLLAASDVISLH 225 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~--~~~~s---L~eLL~~ADVV~l~ 225 (632)
||||||-|..|+.++..++.+|++|+++|+++......+.... ..+.+ +.+++..||+|...
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 5999999999999999999999999999987643321111111 11233 67788889988543
No 360
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.88 E-value=0.17 Score=52.18 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=31.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~ 195 (632)
.|.+|.|+|.|.||..+++.++.+|++ |++.+++.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~ 155 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 688999999999999999999999997 88887654
No 361
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=92.88 E-value=0.62 Score=50.22 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=60.5
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCC--CC-cccc---------cCceecCCHHHHhccCCEEE
Q 006758 164 VLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGK--GK-VTFP---------SAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafGm-------~V~~~dr~~~~--~~-~~~~---------~g~~~~~sL~eLL~~ADVV~ 223 (632)
+|+|||. |.+|..+|..|...|+ ++..+|..... .. ...+ .......+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999886554 59999985432 11 0000 01111125568899999999
Q ss_pred EccCCChh---hH-hh-------cc--HHHHhcc-CCCcEEEEcCCChhhcHHH
Q 006758 224 LHCAVTDE---TI-QI-------IN--AECLQHI-KPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 224 l~lPlT~~---T~-~l-------I~--~~~L~~M-K~GAvLINvgRG~iVDe~A 263 (632)
++.-.... |+ .+ +. ...+... +|.+++|+++ ..+|.-.
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 87654221 11 11 11 1234445 5788999887 5565555
No 362
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=92.86 E-value=0.47 Score=51.42 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=50.1
Q ss_pred ccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCcc-------c--ccC--ceecCCHHHHhccCCEEEEc
Q 006758 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVT-------F--PSA--ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-------~--~~g--~~~~~sL~eLL~~ADVV~l~ 225 (632)
+.|++|+|||-+ ++..+++..+..||++|.+..|..-..... + ..| .....++++.+++||||..-
T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 689999999975 888999999999999999999864221100 0 112 33467899999999999884
No 363
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.83 E-value=0.14 Score=52.17 Aligned_cols=39 Identities=18% Similarity=0.069 Sum_probs=35.2
Q ss_pred cccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 157 MRRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
|.++.++++.|.|. |.||..+|+.|...|++|++.+++.
T Consensus 4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~ 43 (264)
T PRK07576 4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ 43 (264)
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45689999999998 7999999999999999999999875
No 364
>PRK06349 homoserine dehydrogenase; Provisional
Probab=92.82 E-value=0.48 Score=52.80 Aligned_cols=107 Identities=9% Similarity=0.076 Sum_probs=61.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhC----------CCEEE-EECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSF----------KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf----------Gm~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT 229 (632)
.+|||||+|.||+.+++.+... +++|. +++++..........+.....++++++. +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 4799999999999999887432 45644 4466543322111112334578999996 469999998753
Q ss_pred hhhHhhccHHHHhccCCCcEEEEcCCChhh-cHHHHHHHHHcCCc
Q 006758 230 DETIQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLIDGTL 273 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLINvgRG~iV-De~AL~~AL~sg~I 273 (632)
.-...+ ....|+.|.-+|-.-=+-+. .-.+|.++.++...
T Consensus 84 ~~~~~~----~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 84 EPAREL----ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred hHHHHH----HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence 222222 22445556555432112222 23557776666554
No 365
>PLN02214 cinnamoyl-CoA reductase
Probab=92.81 E-value=0.37 Score=51.45 Aligned_cols=70 Identities=11% Similarity=0.008 Sum_probs=49.6
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCc----c----------cccCceecCCHHHHhccCCEEE
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKV----T----------FPSAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~----~----------~~~g~~~~~sL~eLL~~ADVV~ 223 (632)
.+++++|.|.|. |-||+.+++.|...|.+|.+..+....... . .........++.+++..+|+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 467899999997 999999999999999999999876432100 0 0011112335677888899888
Q ss_pred EccCC
Q 006758 224 LHCAV 228 (632)
Q Consensus 224 l~lPl 228 (632)
.+...
T Consensus 87 h~A~~ 91 (342)
T PLN02214 87 HTASP 91 (342)
T ss_pred EecCC
Confidence 77643
No 366
>PRK06398 aldose dehydrogenase; Validated
Probab=92.80 E-value=0.42 Score=48.50 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=33.8
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
+++|+++.|.|. |.||..+|+.|...|++|++.+++..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 478999999995 68999999999999999999998754
No 367
>PRK07877 hypothetical protein; Provisional
Probab=92.79 E-value=0.17 Score=60.12 Aligned_cols=100 Identities=21% Similarity=0.243 Sum_probs=66.8
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC----c---ccccC-------------------c--
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK----V---TFPSA-------------------A-- 206 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~----~---~~~~g-------------------~-- 206 (632)
...|++++|+|||+| +|..+|..|...|. ++..+|...-... . ....| +
T Consensus 102 Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~ 180 (722)
T PRK07877 102 QERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV 180 (722)
T ss_pred HHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence 356999999999999 99999999998884 8888886531110 0 00000 0
Q ss_pred ----eecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhc
Q 006758 207 ----RRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLD 260 (632)
Q Consensus 207 ----~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVD 260 (632)
....++++++..+|+|+-|+-. -+++.+|+......-+ .+|.-.+-++.+|
T Consensus 181 ~~~~i~~~n~~~~l~~~DlVvD~~D~-~~~R~~ln~~a~~~~i--P~i~~~~~~g~~~ 235 (722)
T PRK07877 181 FTDGLTEDNVDAFLDGLDVVVEECDS-LDVKVLLREAARARRI--PVLMATSDRGLLD 235 (722)
T ss_pred EeccCCHHHHHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCC--CEEEEcCCCCCcC
Confidence 1123678899999999999874 6889999887666432 2333343334443
No 368
>PRK12861 malic enzyme; Reviewed
Probab=92.79 E-value=0.43 Score=56.97 Aligned_cols=180 Identities=15% Similarity=0.172 Sum_probs=115.0
Q ss_pred cCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHh
Q 006758 103 LGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSL 182 (632)
Q Consensus 103 rGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~Lk 182 (632)
..|+++|.+--. +|=-+++.+|+.+|-. .+.|.+.+|.|.|.|.-|..+|+.+.
T Consensus 156 ~~ipvf~DD~qG---Ta~v~lA~llnal~~~-----------------------gk~l~d~~iv~~GAGaAg~~ia~~l~ 209 (764)
T PRK12861 156 MKIPVFHDDQHG---TAITVSAAFINGLKVV-----------------------GKSIKEVKVVTSGAGAAALACLDLLV 209 (764)
T ss_pred CCCCeeccccch---HHHHHHHHHHHHHHHh-----------------------CCChhHcEEEEECHhHHHHHHHHHHH
Confidence 379999985433 3444677777777521 13478899999999999999999999
Q ss_pred hCCC---EEEEECCCC-----CCC-----CcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcE
Q 006758 183 SFKM---SVLYFDVPE-----GKG-----KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249 (632)
Q Consensus 183 afGm---~V~~~dr~~-----~~~-----~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAv 249 (632)
..|+ +++.+|+.. ... +..+... ....+|.|++..+|+++=.- +-++|+++.++.|.+.++
T Consensus 210 ~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~-~~~~~L~eai~~advliG~S-----~~g~ft~e~v~~Ma~~PI 283 (764)
T PRK12861 210 DLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQE-TDARTLAEVIGGADVFLGLS-----AGGVLKAEMLKAMAARPL 283 (764)
T ss_pred HcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhh-cCCCCHHHHHhcCCEEEEcC-----CCCCCCHHHHHHhccCCE
Confidence 9999 799999653 111 0111111 12358999999999886542 248999999999999999
Q ss_pred EEEcCCChhhcHHHHHHHHHc-CC-cceEEeecCCCCCCCCccccCCCcEEEcCCCCCccH-----HHHHHHHHHHHHHH
Q 006758 250 LVNTGSSQLLDDCAVKQLLID-GT-LAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSE-----EVWMEIRDKAISVL 322 (632)
Q Consensus 250 LINvgRG~iVDe~AL~~AL~s-g~-I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~-----ea~~~~~~~a~~nL 322 (632)
+.=.+.-.. |.-=.+|.+. |. |.+- -....++ ...|+++=|-++-..- ..-++|...+++-|
T Consensus 284 IFaLsNPtp--E~~pe~a~~~~g~aivaT-----Grs~~pn----Q~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~al 352 (764)
T PRK12861 284 ILALANPTP--EIFPELAHATRDDVVIAT-----GRSDYPN----QVNNVLCFPYIFRGALDVGATTITREMEIAAVHAI 352 (764)
T ss_pred EEECCCCCc--cCCHHHHHhcCCCEEEEe-----CCcCCCC----ccceeeecchhhHHHHHcCCccCCHHHHHHHHHHH
Confidence 999988664 2111222233 33 3321 1111111 4568999897543221 12355555556666
Q ss_pred HHH
Q 006758 323 QTF 325 (632)
Q Consensus 323 ~~f 325 (632)
..+
T Consensus 353 A~~ 355 (764)
T PRK12861 353 AGL 355 (764)
T ss_pred Hhh
Confidence 554
No 369
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=92.75 E-value=0.39 Score=51.03 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=35.6
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|...+|.|+|+|.+|..+|+.|...|. +|..+|...
T Consensus 14 q~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 14 MKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 467899999999999999999999999998 699999775
No 370
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.74 E-value=0.16 Score=50.38 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=33.6
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
+.++++.|+|. |.||..+++.|...|++|++++|+..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 67899999996 89999999999999999999998863
No 371
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.72 E-value=0.16 Score=57.12 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=69.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-cccCceecC--CHHHHhccCCEEEEcc--CCC-hhh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-FPSAARRMD--TLNDLLAASDVISLHC--AVT-DET 232 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-~~~g~~~~~--sL~eLL~~ADVV~l~l--PlT-~~T 232 (632)
.+.+++|.|+|+|.+|.++|+.|...|+.|.++|+........ ...++.... ...+.+.++|+|+..- |.+ |..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 4688999999999999999999999999999999764322111 112332221 2234466889888763 322 221
Q ss_pred -------HhhccHHHHhc-------c--CCCcEEEEcCCChhhcHHHHHHHHHcC
Q 006758 233 -------IQIINAECLQH-------I--KPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (632)
Q Consensus 233 -------~~lI~~~~L~~-------M--K~GAvLINvgRG~iVDe~AL~~AL~sg 271 (632)
..+++.-.+.. + +...+-|--+-|+..-..-|...|+..
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 11233333321 1 223455666678888777777778753
No 372
>PRK05442 malate dehydrogenase; Provisional
Probab=92.71 E-value=0.9 Score=49.09 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=61.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCC--CC-c---------ccccCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGK--GK-V---------TFPSAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm-------~V~~~dr~~~~--~~-~---------~~~~g~~~~~sL~eLL~~ADVV 222 (632)
.+|+|||. |.+|..+|-.|...|+ ++..+|..... .. . .+.....-.....+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999998765333 79999985421 11 0 0001111124566889999999
Q ss_pred EEccCCCh---hhH--------hhcc--HHHHhc-cCCCcEEEEcCCChhhcHHHHH
Q 006758 223 SLHCAVTD---ETI--------QIIN--AECLQH-IKPGAFLVNTGSSQLLDDCAVK 265 (632)
Q Consensus 223 ~l~lPlT~---~T~--------~lI~--~~~L~~-MK~GAvLINvgRG~iVDe~AL~ 265 (632)
+++.-... +|+ .++. ...+.. -++.+++|.++ ..+|.-..+
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v 139 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALI 139 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHH
Confidence 99775321 121 1221 112333 34689999998 566655533
No 373
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.71 E-value=0.13 Score=59.73 Aligned_cols=92 Identities=14% Similarity=0.195 Sum_probs=62.8
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-------eecCCHHHH-hccCCEEEEccCCChhhH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDL-LAASDVISLHCAVTDETI 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eL-L~~ADVV~l~lPlT~~T~ 233 (632)
..+|.|+|+|++|+.+|+.|...|.++++.|.++...+.....+. ...+.|+++ +.+||+|+++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 357999999999999999999999999999988654331111121 111223332 678999999999876665
Q ss_pred hhccHHHHhccCCCcEEEEcCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgR 255 (632)
.++ .....+.|...+|=-+|
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeC
Confidence 553 34555666666665544
No 374
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.71 E-value=1 Score=48.16 Aligned_cols=98 Identities=16% Similarity=0.207 Sum_probs=59.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCC--CCCC-cc---------cccC--ceecCCHHHHhccCCEEEEc
Q 006758 163 LVLGIVGR-SASARALATRSLSFKM--SVLYFDVPE--GKGK-VT---------FPSA--ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm--~V~~~dr~~--~~~~-~~---------~~~g--~~~~~sL~eLL~~ADVV~l~ 225 (632)
++|+|+|. |.+|..+|..|...|. +|+.+|+.. .... .. .... .....+. +.+.+||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 47999998 9999999999987776 599999854 1111 00 0001 1112244 459999999999
Q ss_pred cCCChh---hH--------hhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 226 CAVTDE---TI--------QIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 226 lPlT~~---T~--------~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
...... ++ .++. ...+....+.+++|+++ ..+|.-.
T Consensus 80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t 128 (309)
T cd05294 80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMT 128 (309)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHH
Confidence 864221 21 1221 12344455677888876 4455444
No 375
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.67 E-value=0.38 Score=50.60 Aligned_cols=65 Identities=14% Similarity=0.057 Sum_probs=45.9
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccC-------ceecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA-------ARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g-------~~~~~sL~eLL~~ADVV~l~lP 227 (632)
++|.|+| .|.||+.+++.|...|++|.++.|+..........+ .....++.+++..+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 3688999 699999999999999999999988753211000111 1123456788999999987653
No 376
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.66 E-value=0.21 Score=56.13 Aligned_cols=111 Identities=16% Similarity=0.108 Sum_probs=69.4
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---ccccCcee--cCCHHHHhccCCEEEEccCCChh---
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFPSAARR--MDTLNDLLAASDVISLHCAVTDE--- 231 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---~~~~g~~~--~~sL~eLL~~ADVV~l~lPlT~~--- 231 (632)
+.|++|+|+|+|..|.++|+.|...|++|+++|........ .+..+... .....+.+..+|+|+..--..+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 46899999999999999999999999999999965322111 11111111 11123556789999885433222
Q ss_pred h-------HhhccHHHH--hc-cC-----CCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 232 T-------IQIINAECL--QH-IK-----PGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 232 T-------~~lI~~~~L--~~-MK-----~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
. ..++++-.| .. ++ ...+-|--+.|+.--..-|...|+.
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 123544443 33 31 2356666667888777777777764
No 377
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=92.65 E-value=0.15 Score=53.64 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=47.7
Q ss_pred cEEEEEeCChhhH-HHHHHHhhCC--C-EEEEECCCCCCCCcc-cccCc-eecCCHHHHhcc--CCEEEEccCCChh
Q 006758 163 LVLGIVGRSASAR-ALATRSLSFK--M-SVLYFDVPEGKGKVT-FPSAA-RRMDTLNDLLAA--SDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~-~vA~~LkafG--m-~V~~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~~--ADVV~l~lPlT~~ 231 (632)
.+|||||+|.|++ ..+..++..+ + -|.++|++....+.. ...+. ..+.+++++|+. .|+|+++.|..-.
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 5799999997775 5777787775 3 466668887543211 11122 357899999997 4899999996443
No 378
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=92.60 E-value=0.2 Score=53.67 Aligned_cols=95 Identities=13% Similarity=0.166 Sum_probs=68.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------------cccccCce-----------ecCCHHH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------------VTFPSAAR-----------RMDTLND 214 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-------------~~~~~g~~-----------~~~sL~e 214 (632)
...+.++-++|+|-+|-..+......|+-|..+|-.....+ .+...+.+ ...-+.+
T Consensus 161 tv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~ 240 (356)
T COG3288 161 TVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAE 240 (356)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999986542111 00011111 1122456
Q ss_pred HhccCCEEEEc--cCCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 215 LLAASDVISLH--CAVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 215 LL~~ADVV~l~--lPlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
..++.||||.. +|..|.- -++.++..+.||||.++|+.+
T Consensus 241 ~~~~~DivITTAlIPGrpAP-~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 241 QAKEVDIVITTALIPGRPAP-KLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HhcCCCEEEEecccCCCCCc-hhhHHHHHHhcCCCcEEEEeh
Confidence 78899999985 5665553 578899999999999999975
No 379
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.59 E-value=0.22 Score=52.24 Aligned_cols=87 Identities=17% Similarity=0.105 Sum_probs=50.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
.|.++.|+|.|.||...++.++.+|++ |.++++.....+....... .+.-++.-...|+|+-+..... .+ ..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~~~----~~-~~ 216 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGDPS----LI-DT 216 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCCHH----HH-HH
Confidence 477899999999999999999999997 5556655432211111011 1111111124577776655311 11 24
Q ss_pred HHhccCCCcEEEEcC
Q 006758 240 CLQHIKPGAFLVNTG 254 (632)
Q Consensus 240 ~L~~MK~GAvLINvg 254 (632)
.+..|+++..++.+|
T Consensus 217 ~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 217 LVRRLAKGGEIVLAG 231 (308)
T ss_pred HHHhhhcCcEEEEEe
Confidence 556677777777665
No 380
>PRK15076 alpha-galactosidase; Provisional
Probab=92.54 E-value=0.19 Score=56.16 Aligned_cols=67 Identities=7% Similarity=0.100 Sum_probs=45.3
Q ss_pred cEEEEEeCChhhHHHHH--HH---hhC-CCEEEEECCCCCCCC----------ccc--ccCceecCCHHHHhccCCEEEE
Q 006758 163 LVLGIVGRSASARALAT--RS---LSF-KMSVLYFDVPEGKGK----------VTF--PSAARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~--~L---kaf-Gm~V~~~dr~~~~~~----------~~~--~~g~~~~~sL~eLL~~ADVV~l 224 (632)
.+|+|||.|.+|...+- .+ .++ |.+|+.||......+ ... ...+....++.+.+++||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 47999999999966544 22 334 569999998764322 001 1122335678899999999999
Q ss_pred ccCCC
Q 006758 225 HCAVT 229 (632)
Q Consensus 225 ~lPlT 229 (632)
++-..
T Consensus 82 ti~vg 86 (431)
T PRK15076 82 AIQVG 86 (431)
T ss_pred eeeeC
Confidence 88763
No 381
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=92.51 E-value=0.37 Score=51.28 Aligned_cols=95 Identities=11% Similarity=0.178 Sum_probs=59.4
Q ss_pred EEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------c-ccccCceecCCHHHHhccCCEEEEccCCChh---
Q 006758 167 IVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------V-TFPSAARRMDTLNDLLAASDVISLHCAVTDE--- 231 (632)
Q Consensus 167 IIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~-~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~--- 231 (632)
|||.|.||..+|..|...+. ++..+|....... . ...........-.+.+++||+|+++.-....
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 69999999999999886665 7999998654222 0 0001111122345789999999997654211
Q ss_pred --------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 232 --------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 232 --------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
+..++. ...+....|.+++|+++ ..+|.-.
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t 120 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT--NPVDILT 120 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC--CHHHHHH
Confidence 222221 23445567899999987 3444333
No 382
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.49 E-value=0.31 Score=48.25 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=32.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|.+|.|+|.|.+|+.+++.++..|.+|++.+++.
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 68899999999999999999999999999998874
No 383
>PRK14851 hypothetical protein; Provisional
Probab=92.44 E-value=0.23 Score=58.67 Aligned_cols=38 Identities=11% Similarity=0.018 Sum_probs=33.7
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~ 194 (632)
...|++++|+|||+|.+|..+|..|...|. ++.++|..
T Consensus 38 Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 38 QERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred HHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 356899999999999999999999999888 78888865
No 384
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.25 E-value=0.18 Score=57.79 Aligned_cols=88 Identities=10% Similarity=0.089 Sum_probs=58.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-------eecCCHHH-HhccCCEEEEccCCChhhHh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLND-LLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-------~~~~sL~e-LL~~ADVV~l~lPlT~~T~~ 234 (632)
.++-|+|+|++|+.+|+.|+..|.+|+++|.++...+.....+. ...+.|++ -+.++|.|+++++...++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 56889999999999999999999999999988654331111111 11112222 25688999999998776655
Q ss_pred hccHHHHhccCCCcEEEE
Q 006758 235 IINAECLQHIKPGAFLVN 252 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLIN 252 (632)
++-. ...+.+...+|=
T Consensus 498 iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 498 IVAS--AREKRPDIEIIA 513 (558)
T ss_pred HHHH--HHHHCCCCeEEE
Confidence 5432 233445555553
No 385
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.09 E-value=0.17 Score=53.26 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=43.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCceecCCHH-HH-hccCCEEEEccCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRMDTLN-DL-LAASDVISLHCAV 228 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~~~sL~-eL-L~~ADVV~l~lPl 228 (632)
++++.|+|.|..|++++..|...|+ +|.+++|+....+..... .. .++. ++ ...+|+||.+.|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~-~~--~~~~~~~~~~~~dlvINaTp~ 188 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAEL-YG--YEWRPDLGGIEADILVNVTPI 188 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-hC--CcchhhcccccCCEEEECCcc
Confidence 4689999999999999999999998 599999986433211000 00 1111 11 2457888888885
No 386
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=92.08 E-value=0.42 Score=51.93 Aligned_cols=66 Identities=8% Similarity=0.047 Sum_probs=50.4
Q ss_pred ccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------cccCceecCCHHHHhccCCEEEEc
Q 006758 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-----------~~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
+.|.+|++||-+ ++..+++..+..||++|.++.|..-..... ....+....++++.++++|||..-
T Consensus 154 l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 154 FNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred cCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 689999999976 689999999999999999999865221110 011233468899999999999885
No 387
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.06 E-value=0.17 Score=59.04 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=60.6
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc--e-----ecCCHHH-HhccCCEEEEccCCChhhH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--R-----RMDTLND-LLAASDVISLHCAVTDETI 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~--~-----~~~sL~e-LL~~ADVV~l~lPlT~~T~ 233 (632)
..+|-|+|+|++|+.+|+.|...|.++++.|.++...+.....+. . ..+.|++ =+.++|.|+++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 467999999999999999999999999999988654331111111 1 1122222 2568999999998766655
Q ss_pred hhccHHHHhccCCCcEEEEcCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgR 255 (632)
.++ ...+.+.|...+|--++
T Consensus 480 ~i~--~~ar~~~p~~~iiaRa~ 499 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIARAR 499 (621)
T ss_pred HHH--HHHHHhCCCCeEEEEEC
Confidence 443 34455556655554333
No 388
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.95 E-value=0.35 Score=54.24 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=65.7
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc--ccccCceecCCHHHHhccCCEEEEccCCChh---h--
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV--TFPSAARRMDTLNDLLAASDVISLHCAVTDE---T-- 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~--~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~---T-- 232 (632)
-.|++|+|+|+|..|.++|+.|+. |++|.++|........ .............+.+.++|+|+..=-..+. .
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~ 82 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKI 82 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHH
Confidence 368899999999999999999996 9999999954322110 0000000111123456789998885422221 1
Q ss_pred -----HhhccHHHH--hccCC-CcEEEEcCCChhhcHHHHHHHHHc
Q 006758 233 -----IQIINAECL--QHIKP-GAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 233 -----~~lI~~~~L--~~MK~-GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
..++++-.| ..++. -.+-|--+.|+..-..-|...|+.
T Consensus 83 a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 83 AKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 123433333 33332 245555567888877777777775
No 389
>PRK10206 putative oxidoreductase; Provisional
Probab=91.93 E-value=0.21 Score=53.91 Aligned_cols=67 Identities=10% Similarity=0.039 Sum_probs=43.3
Q ss_pred EEEEEeCChhhHH-HHHHHhh--CCCEEE-EECCCCCCCCccccc-CceecCCHHHHhc--cCCEEEEccCCCh
Q 006758 164 VLGIVGRSASARA-LATRSLS--FKMSVL-YFDVPEGKGKVTFPS-AARRMDTLNDLLA--ASDVISLHCAVTD 230 (632)
Q Consensus 164 tVGIIGlG~IG~~-vA~~Lka--fGm~V~-~~dr~~~~~~~~~~~-g~~~~~sL~eLL~--~ADVV~l~lPlT~ 230 (632)
+|||||+|.|++. .+..+.. -+++|. ++|++.......... ....+.+++++|. +.|+|++++|...
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~ 76 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS 76 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence 6999999998864 3443432 367775 578765322111111 2345678999996 5799999999644
No 390
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=91.89 E-value=1.1 Score=50.62 Aligned_cols=106 Identities=11% Similarity=0.014 Sum_probs=66.8
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-------CC--EEEEECCCCCCCC-------c---ccccCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGR-SASARALATRSLSF-------KM--SVLYFDVPEGKGK-------V---TFPSAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-------Gm--~V~~~dr~~~~~~-------~---~~~~g~~~~~sL~eLL~~ADVV 222 (632)
.+|+|||. |.||..+|-.|..- |. +++.+|......+ . .+...+.....-.+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 57999999 99999999988754 44 7899998765433 0 0111122123456889999999
Q ss_pred EEccCCChh-----------hHhhcc--HHHHhc-cCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 223 SLHCAVTDE-----------TIQIIN--AECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 223 ~l~lPlT~~-----------T~~lI~--~~~L~~-MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
+++.-.... +..++. ...+.. -.+.+++|.++ ..+|.-+.+-.-.+
T Consensus 181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~s 240 (444)
T PLN00112 181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNA 240 (444)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence 998754221 122221 124444 47789999887 56666665544333
No 391
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=91.83 E-value=0.61 Score=47.92 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=46.8
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCc----ccccCceecCCHHHHh------cc-CCEEEEccCCCh
Q 006758 164 VLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKV----TFPSAARRMDTLNDLL------AA-SDVISLHCAVTD 230 (632)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~----~~~~g~~~~~sL~eLL------~~-ADVV~l~lPlT~ 230 (632)
+|.|+|. |.||+.+++.|..-|.+|.+..|+...... .........++|.+++ .. +|.|+++.|...
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~ 79 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIP 79 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCC
Confidence 3678887 999999999999999999999988643221 0111122234566667 45 899998888643
No 392
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.83 E-value=2.5 Score=45.27 Aligned_cols=141 Identities=11% Similarity=0.065 Sum_probs=81.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC------CCCccc-ccC----ceecCCHHHHhccCCEEEEccCCChh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG------KGKVTF-PSA----ARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~------~~~~~~-~~g----~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
++|.|+|.|.||.-+|-+|...|..|+.+.|... .+.... ..+ ......-.+.+..+|+|++++-.. +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence 4799999999999999999999988888887763 110000 011 111223346667999999998643 3
Q ss_pred hHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC--CCCCCccccCCCcEEEcCCCCCcc
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSADYS 307 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~--P~~~~~pL~~~pNVIiTPHiAg~T 307 (632)
|..++ +.....+++.++++=+--| +=.++.+.+.+...+|. .++..+.. ..+..--......+.+.+..++..
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 44444 4566777888776644333 22234666666655454 23443321 111111122345666777666554
No 393
>PRK06128 oxidoreductase; Provisional
Probab=91.82 E-value=0.4 Score=49.92 Aligned_cols=37 Identities=24% Similarity=0.139 Sum_probs=32.2
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCC
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
..+.|+++.|.|. |.||+.+|+.|...|++|++..+.
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 3578999999996 889999999999999999887654
No 394
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.82 E-value=0.29 Score=51.91 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=56.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCH-HHHhccCCEEEEccCCChhhHhhccHH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL-NDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL-~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
.|.+|.|.|.|.+|...++.++.+|++|++.+++....+.....|+..+.+. ++.-...|+++.+.... . .+ ..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~~-~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---LV-PP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---HH-HH
Confidence 5889999999999999999999999999998877544332222333221111 11112356666554431 1 12 34
Q ss_pred HHhccCCCcEEEEcCC
Q 006758 240 CLQHIKPGAFLVNTGS 255 (632)
Q Consensus 240 ~L~~MK~GAvLINvgR 255 (632)
.++.+++|..++.+|-
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 6667777777777664
No 395
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=91.82 E-value=0.36 Score=51.72 Aligned_cols=157 Identities=9% Similarity=0.088 Sum_probs=84.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhC-CCEEEE-ECCCCCCC--CcccccCcee-cCCHHHHhc-----cCCEEEEccCCChh
Q 006758 162 GLVLGIVGRSASARALATRSLSF-KMSVLY-FDVPEGKG--KVTFPSAARR-MDTLNDLLA-----ASDVISLHCAVTDE 231 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~-~dr~~~~~--~~~~~~g~~~-~~sL~eLL~-----~ADVV~l~lPlT~~ 231 (632)
..+|||||.|.||+..+..+... ++++.+ +|++.... ......+... +.++++++. +.|+|+.+.|...
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~- 82 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGA- 82 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHH-
Confidence 46799999999999977776643 677654 56654321 1112234433 468899985 5889999988522
Q ss_pred hHhhccHHHHhccCCCcEEEEcC---CChh----hcHHHHHHHHHcCCcceEEeecCCCCCC-CCcccc--CCCcEEE--
Q 006758 232 TIQIINAECLQHIKPGAFLVNTG---SSQL----LDDCAVKQLLIDGTLAGCALDGAEGPQW-MEAWVR--EMPNVLI-- 299 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvg---RG~i----VDe~AL~~AL~sg~I~GAaLDVfE~P~~-~~~pL~--~~pNVIi-- 299 (632)
|. +-.....+.|..+|+-. +|.+ |+.+++.++ ..-++..+.--.+- |.. .-+++- ..-.|+-
T Consensus 83 --H~--e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~-~~~~iia~p~~ati-~~v~Al~~v~~~~~~eIvat~ 156 (302)
T PRK08300 83 --HV--RHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDA-PNVNMVTCGGQATI-PIVAAVSRVAPVHYAEIVASI 156 (302)
T ss_pred --HH--HHHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcc-cCCCEEECccHHHH-HHHHHhcccCcCceeeeeeee
Confidence 21 22233356788888876 4444 333433221 11122111111110 100 000111 2334442
Q ss_pred cCC-CCCccHHHHHHHHHHHHHHHHHH
Q 006758 300 LPR-SADYSEEVWMEIRDKAISVLQTF 325 (632)
Q Consensus 300 TPH-iAg~T~ea~~~~~~~a~~nL~~f 325 (632)
.-- .+..|....+++.+....-|+.|
T Consensus 157 ~s~s~g~gtr~nidE~~~~t~~~~~~~ 183 (302)
T PRK08300 157 ASKSAGPGTRANIDEFTETTSRAIEKV 183 (302)
T ss_pred hhhccCCcccccHHHHHHHHHHHHHHh
Confidence 112 35566778888888888888775
No 396
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=91.79 E-value=0.69 Score=50.32 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=48.4
Q ss_pred cccCcEEEEEeC---ChhhHHHHHHHh-hCCCEEEEECCCCCCCCccc-------ccCceecCCHHHHhccCCEEEEc
Q 006758 159 RCRGLVLGIVGR---SASARALATRSL-SFKMSVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 159 ~L~GktVGIIGl---G~IG~~vA~~Lk-afGm~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
.+.|++|++||= +++..+++..+. .+|++|.++.|..-.....+ ........++++.+++||||..-
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 378999999998 477888887766 45999999998653211111 11233457999999999999884
No 397
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=91.75 E-value=0.59 Score=42.24 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=57.2
Q ss_pred eEEEEEEecCCceEEeeecccccceEEeecccccCCCccceEEE-eecCccccccccccCCceeeecccceEEEeecccc
Q 006758 507 YVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLI-CKSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFD 585 (632)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (632)
-.|+|++ ..|.||+.+. .|.- +.+.+ .+|..+|-+ +.+..++=|||- .||.|.+++.=-+....|+-+
T Consensus 44 g~v~Lrs--~~G~yls~~~--~g~l----~~~~~-~~~~e~F~~e~~~~g~~al~~~--~G~yl~~~~~g~l~~~~~~~~ 112 (119)
T cd00257 44 GKYALRS--HDGKYLSADS--DGGV----QLEGH-PNADCRFTLEFHGDGKWALRAE--NGRYLGGDGSGTLKASSETVG 112 (119)
T ss_pred CeEEEEE--CCCcEEEEEC--CCCE----EecCC-CCCCcEEEEEECCCCeEEEEcC--CCCEEeecCCCeEEEecCCCC
Confidence 3568886 6999999863 4432 44556 789999999 888789999965 999999987555555566679
Q ss_pred cccccee
Q 006758 586 AWESWAI 592 (632)
Q Consensus 586 ~~~~~~~ 592 (632)
-||.|.+
T Consensus 113 ~~e~f~~ 119 (119)
T cd00257 113 PDELFEL 119 (119)
T ss_pred ccceecC
Confidence 9999874
No 398
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=91.71 E-value=0.51 Score=50.20 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=32.8
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
++|++|.|.|. |-||..+++.|...|.+|+++++...
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 46889999995 99999999999999999999987653
No 399
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=91.67 E-value=0.59 Score=50.67 Aligned_cols=67 Identities=16% Similarity=0.033 Sum_probs=45.5
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc--c-----cCceecCCHHHHhccCCEEEEccC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF--P-----SAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~--~-----~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
.+++|.|.|. |-||+.+++.|...|.+|.++++......... . ........+..++..+|+|+-+..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa 94 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA 94 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence 5788999997 99999999999999999999997542111000 0 011111234456678899886654
No 400
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=91.65 E-value=1.4 Score=46.28 Aligned_cols=159 Identities=12% Similarity=0.108 Sum_probs=101.7
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-----------EEEEECCCCC----CCC-----cc---cccCceecCCHHHH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-----------SVLYFDVPEG----KGK-----VT---FPSAARRMDTLNDL 215 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-----------~V~~~dr~~~----~~~-----~~---~~~g~~~~~sL~eL 215 (632)
+|.+.+|.|+|.|..|..+|+.+...++ +++.+|+..- ... .. +........+|.|+
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~ea 101 (254)
T cd00762 22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDA 101 (254)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHH
Confidence 4789999999999999999999987766 6899998731 100 11 11111234689999
Q ss_pred hc--cCCEEEEccCCChhhHhhccHHHHhccC---CCcEEEEcCCChhhcHHHHHHHHHc--CC-cceEEeecCCCCCCC
Q 006758 216 LA--ASDVISLHCAVTDETIQIINAECLQHIK---PGAFLVNTGSSQLLDDCAVKQLLID--GT-LAGCALDGAEGPQWM 287 (632)
Q Consensus 216 L~--~ADVV~l~lPlT~~T~~lI~~~~L~~MK---~GAvLINvgRG~iVDe~AL~~AL~s--g~-I~GAaLDVfE~P~~~ 287 (632)
+. +.|+++=..- .-++|.++.++.|. +..+|.=.+.-..-.|+--.+|++- |+ |.+.+ .|.++
T Consensus 102 v~~~kptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtG-----spf~p 172 (254)
T cd00762 102 VEAAKPDFLIGVSR----VGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASG-----SPFHP 172 (254)
T ss_pred HHhhCCCEEEEeCC----CCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEEC-----CCCCC
Confidence 99 9999976532 24899999999999 9999999998766444444444443 32 32211 12111
Q ss_pred C---c---cccCCCcEEEcCCCCCccHH-----HHHHHHHHHHHHHHHHH
Q 006758 288 E---A---WVREMPNVLILPRSADYSEE-----VWMEIRDKAISVLQTFF 326 (632)
Q Consensus 288 ~---~---pL~~~pNVIiTPHiAg~T~e-----a~~~~~~~a~~nL~~fL 326 (632)
. - ..-...|+++=|=++-.... .-++|...+++-|..+.
T Consensus 173 v~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v 222 (254)
T cd00762 173 VELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSV 222 (254)
T ss_pred cccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhC
Confidence 1 0 11246789988875433221 23556666666666653
No 401
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=91.63 E-value=0.53 Score=51.11 Aligned_cols=89 Identities=12% Similarity=0.239 Sum_probs=57.0
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhh--C-CCEEEEECCCCCCCCcc-cccCceecCCHHHH-hccCCEEEEccCCChhhHh
Q 006758 161 RGLVLGIVGR-SASARALATRSLS--F-KMSVLYFDVPEGKGKVT-FPSAARRMDTLNDL-LAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~Lka--f-Gm~V~~~dr~~~~~~~~-~~~g~~~~~sL~eL-L~~ADVV~l~lPlT~~T~~ 234 (632)
++.+|+|||. |-+|+.+.+.|.. | ..++..+......++.. +......+.++++. +.++|+|++++|..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~----- 77 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGRE----- 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHH-----
Confidence 4678999998 9999999999987 5 45777665443333311 11111222345554 37899999999953
Q ss_pred hccHHHHhcc-CCCcEEEEcCC
Q 006758 235 IINAECLQHI-KPGAFLVNTGS 255 (632)
Q Consensus 235 lI~~~~L~~M-K~GAvLINvgR 255 (632)
+..+....+ +.|+.+|+.+.
T Consensus 78 -~s~~~~~~~~~~g~~VIDlS~ 98 (336)
T PRK08040 78 -ASAAYAEEATNAGCLVIDSSG 98 (336)
T ss_pred -HHHHHHHHHHHCCCEEEECCh
Confidence 223333333 56999999984
No 402
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=91.52 E-value=0.72 Score=49.66 Aligned_cols=88 Identities=13% Similarity=0.134 Sum_probs=56.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---ccc----------------------ccC--ce----ecCC
Q 006758 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VTF----------------------PSA--AR----RMDT 211 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---~~~----------------------~~g--~~----~~~s 211 (632)
+|.|||.|.+|..+++.|...|. ++.++|...-... ..+ ... +. ...+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 48999999999999999998888 7888886542111 000 000 00 1111
Q ss_pred ---HHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 212 ---LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 212 ---L~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
..+++.+.|+|+.++- +.+++..++.-.... +.-+|..+.
T Consensus 81 ~~~~~~f~~~~DvVv~a~D-n~~ar~~in~~c~~~---~ip~I~~gt 123 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALD-NLAARRHVNKMCLAA---DVPLIESGT 123 (312)
T ss_pred ccchHHHHhcCCEEEECCC-CHHHHHHHHHHHHHC---CCCEEEEec
Confidence 2367888898888874 566777777665543 345677654
No 403
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.51 E-value=0.33 Score=50.99 Aligned_cols=36 Identities=11% Similarity=0.020 Sum_probs=32.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~~ 196 (632)
.|.+|.|+|.|.||..+++.++.+|++ |++.+++..
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~ 199 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPE 199 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 489999999999999999999999999 998887643
No 404
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.49 E-value=0.41 Score=52.87 Aligned_cols=111 Identities=13% Similarity=0.092 Sum_probs=66.8
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccccCceecC--CHHHHhccCCEEEEccCCChhhH---
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRMD--TLNDLLAASDVISLHCAVTDETI--- 233 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~~g~~~~~--sL~eLL~~ADVV~l~lPlT~~T~--- 233 (632)
+.+++|.|||+|.+|.+.++.|+..|.+|.++|....... ..+..++.... .-.+.+...|+|+..--..+...
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 83 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVASPGIALAHPSLS 83 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHHH
Confidence 5688999999999999999999999999999997543221 11222322211 12244567887666432222211
Q ss_pred -------hhccH-HHHhcc-CCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 234 -------QIINA-ECLQHI-KPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 234 -------~lI~~-~~L~~M-K~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
.++.. +.+..+ +.-.+-|--+.|+.--..-|...|..
T Consensus 84 ~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 84 AAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 12232 333332 32345566667888766667777764
No 405
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=91.44 E-value=0.57 Score=51.03 Aligned_cols=108 Identities=7% Similarity=-0.043 Sum_probs=67.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCEEEE-ECCCCCCCCc-ccccCceecCCHHHHhccCCEEEEccCCC-hhhHhhcc
Q 006758 163 LVLGIVGRSASARALATRSLSF--KMSVLY-FDVPEGKGKV-TFPSAARRMDTLNDLLAASDVISLHCAVT-DETIQIIN 237 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--Gm~V~~-~dr~~~~~~~-~~~~g~~~~~sL~eLL~~ADVV~l~lPlT-~~T~~lI~ 237 (632)
.+|||||. .+|+.-++.++.. ++++.+ +|+.....+. ....++..+.++++++.+.|++++++|.+ +...|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~-- 80 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS-- 80 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence 57999999 6899888888765 477655 5776543321 11123445789999999999999999853 322222
Q ss_pred HHHHhccCCC-cEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 238 AECLQHIKPG-AFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 238 ~~~L~~MK~G-AvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+-..+.|+.| .+|+.-==. .-+.++|+++.++..+.
T Consensus 81 e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~ 117 (343)
T TIGR01761 81 ALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRR 117 (343)
T ss_pred HHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCE
Confidence 2233344455 344442222 34556688877776665
No 406
>PRK06392 homoserine dehydrogenase; Provisional
Probab=91.41 E-value=0.93 Score=49.04 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=60.7
Q ss_pred EEEEEeCChhhHHHHHHHhh--------CCCEEEEE-CCCCCCCC-ccc---------ccC---ceecC--CHHHHh-cc
Q 006758 164 VLGIVGRSASARALATRSLS--------FKMSVLYF-DVPEGKGK-VTF---------PSA---ARRMD--TLNDLL-AA 218 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lka--------fGm~V~~~-dr~~~~~~-~~~---------~~g---~~~~~--sL~eLL-~~ 218 (632)
+|+|+|+|+||+.+++.|.. ++++|.++ |++..... ..+ ..+ ..... ++++++ ..
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 69999999999999999865 56776655 44321000 000 000 01112 455553 46
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhh-cHHHHHHHHHcCCc
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLIDGTL 273 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iV-De~AL~~AL~sg~I 273 (632)
+|||+=|.|....-.... .-....|+.|.-+|-..-|.+. .-..|.++.+++..
T Consensus 82 ~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~ 136 (326)
T PRK06392 82 PDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRR 136 (326)
T ss_pred CCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCC
Confidence 799998887532100011 2234556677777766666654 34556666555543
No 407
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.39 E-value=0.38 Score=53.81 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=68.5
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----ccc-ccCceec--CCHHHHhccCCEEEEccCCChh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----VTF-PSAARRM--DTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~----~~~-~~g~~~~--~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
.+.+++|.|||.|.+|.++|..|+..|++|.++|....... ..+ ..++... ... ++...+|+|++..-..+.
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~~~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-TLPEDTDLVVTSPGWRPD 91 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-cccCCCCEEEECCCcCCC
Confidence 46789999999999999999999999999999996542111 001 1122211 111 144568999988644333
Q ss_pred hHh----------hccHH-HH-hccCC----CcEEEEcCCChhhcHHHHHHHHHc
Q 006758 232 TIQ----------IINAE-CL-QHIKP----GAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 232 T~~----------lI~~~-~L-~~MK~----GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
+.- +++.- .+ ..+.+ ..+-|--+.|+.--..-|...|..
T Consensus 92 ~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 92 APLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred CHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 221 23322 22 33322 246666667888766667777765
No 408
>PRK12939 short chain dehydrogenase; Provisional
Probab=91.37 E-value=0.54 Score=46.56 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=33.0
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.++++.|+|. |.||+.+|+.+...|++|++++++.
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~ 41 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLA 41 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence 367899999995 8999999999999999999998764
No 409
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=91.31 E-value=0.23 Score=44.85 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=53.1
Q ss_pred eCChhhHHHHHHHhhC----CCEEEEE-CCC--CCCCCcccccCceecCCHHHHhc--cCCEEEEccCCChhhHhhccHH
Q 006758 169 GRSASARALATRSLSF----KMSVLYF-DVP--EGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 169 GlG~IG~~vA~~Lkaf----Gm~V~~~-dr~--~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
|+|.||+.+++.+... +++|.++ +++ ................++++++. ..|+|+=|.+..+-+ +-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-----HH
Confidence 8999999999999865 6776665 555 11111111122345679999998 899999995542222 23
Q ss_pred HHhccCCCcEEEEcCCChhh
Q 006758 240 CLQHIKPGAFLVNTGSSQLL 259 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~iV 259 (632)
....|+.|.-+|-..-+.+.
T Consensus 76 ~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALA 95 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHH
T ss_pred HHHHHHCCCeEEEECHHHhh
Confidence 44556788888888888777
No 410
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=91.28 E-value=0.52 Score=50.12 Aligned_cols=88 Identities=10% Similarity=0.159 Sum_probs=54.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEE-ECCCCCCCC--cccccCce-ecCCHHHHhc--cCCEEEEccCCChhhHhh
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVLY-FDVPEGKGK--VTFPSAAR-RMDTLNDLLA--ASDVISLHCAVTDETIQI 235 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~-~dr~~~~~~--~~~~~g~~-~~~sL~eLL~--~ADVV~l~lPlT~~T~~l 235 (632)
.+|||||.|.||+..+..+... ++++.. +|+++.... .....+.. .+.++++++. +.|+|+++.|....-
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~--- 78 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHA--- 78 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHH---
Confidence 3699999999999887766643 677665 566654321 11222332 3457888886 578899999863321
Q ss_pred ccHHHHhccCCCcEEEEcCC
Q 006758 236 INAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgR 255 (632)
+-....++.|..+|+-.-
T Consensus 79 --e~a~~al~aGk~VIdekP 96 (285)
T TIGR03215 79 --RHARLLAELGKIVIDLTP 96 (285)
T ss_pred --HHHHHHHHcCCEEEECCc
Confidence 122334556666655443
No 411
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.22 E-value=0.47 Score=51.28 Aligned_cols=89 Identities=16% Similarity=0.180 Sum_probs=53.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc-cCceecCCH---------HHHh--ccCCEEEEccCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP-SAARRMDTL---------NDLL--AASDVISLHCAV 228 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~-~g~~~~~sL---------~eLL--~~ADVV~l~lPl 228 (632)
+.+|.|+|.|.||...+..++.+|+ +|++.|++....+.+.. .+.....+. .++. ..+|+++-|...
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 3399999999999999999999997 67777887654432211 111111111 1222 237777777762
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
+. .+ ...+..++++..++.+|=
T Consensus 249 -~~---~~-~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 249 -PP---AL-DQALEALRPGGTVVVVGV 270 (350)
T ss_pred -HH---HH-HHHHHHhcCCCEEEEEec
Confidence 22 11 345555666666666654
No 412
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=91.21 E-value=1.7 Score=47.27 Aligned_cols=67 Identities=6% Similarity=0.044 Sum_probs=50.4
Q ss_pred ccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~ADVV~l~l 226 (632)
+.|.+|++||-+ ++..+++..+..||++|.+..|..-.....+ ..+ .....++++.++.+|||..-.
T Consensus 154 l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 233 (334)
T PRK12562 154 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDV 233 (334)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 689999999975 7889999999999999999998642211000 012 334578999999999998853
No 413
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.17 E-value=0.59 Score=48.16 Aligned_cols=111 Identities=11% Similarity=0.108 Sum_probs=66.7
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---ccc-----ccCcee----cCCHHHHhccCCEEE
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VTF-----PSAARR----MDTLNDLLAASDVIS 223 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---~~~-----~~g~~~----~~sL~eLL~~ADVV~ 223 (632)
+..|++++|.|+|+|.+|..+|+.|...|. ++..+|...-... ..+ ..|... ...+.++-+.+.+..
T Consensus 6 ~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~ 85 (231)
T cd00755 6 LEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDA 85 (231)
T ss_pred HHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 356899999999999999999999999998 8999997642221 000 011111 123556666777776
Q ss_pred EccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 224 LHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 224 l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
....+++++.. +.+. ++=-++|++- ..+-...+|.+......+.
T Consensus 86 ~~~~i~~~~~~----~l~~--~~~D~Vvdai-D~~~~k~~L~~~c~~~~ip 129 (231)
T cd00755 86 VEEFLTPDNSE----DLLG--GDPDFVVDAI-DSIRAKVALIAYCRKRKIP 129 (231)
T ss_pred eeeecCHhHHH----HHhc--CCCCEEEEcC-CCHHHHHHHHHHHHHhCCC
Confidence 66666554321 1111 1123666652 2233344577776666666
No 414
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=91.09 E-value=0.51 Score=49.02 Aligned_cols=67 Identities=13% Similarity=0.080 Sum_probs=46.5
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc--------c-------cccCceecCCHHHHhccCCEEEE
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV--------T-------FPSAARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~--------~-------~~~g~~~~~sL~eLL~~ADVV~l 224 (632)
.|++|.|.| .|-||+.+++.|...|.+|.++++....... . +.........+++++..+|+|+.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 478999999 6999999999999999999988765432100 0 00011122356778888898877
Q ss_pred ccC
Q 006758 225 HCA 227 (632)
Q Consensus 225 ~lP 227 (632)
+..
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 664
No 415
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.02 E-value=0.72 Score=49.63 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=31.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|.+|.|.|.|.||..+++.++.+|++|++.+...
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~ 217 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS 217 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 58899999999999999999999999998877654
No 416
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=91.00 E-value=1.9 Score=47.46 Aligned_cols=108 Identities=10% Similarity=0.038 Sum_probs=68.0
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----c--ccCceec--CCHHHHhccCCEEEEccCCC---hhh
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT----F--PSAARRM--DTLNDLLAASDVISLHCAVT---DET 232 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~----~--~~g~~~~--~sL~eLL~~ADVV~l~lPlT---~~T 232 (632)
++.|||+|.+|.++|+.|+..|++|.++|......... . ..++... .+ .+.+..+|+|+..--.. |+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 37899999999999999999999999999764322110 1 1233221 23 45567899888754332 221
Q ss_pred H-------hhccHH-HH-hccCCCcEEEEcCCChhhcHHHHHHHHHcCC
Q 006758 233 I-------QIINAE-CL-QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272 (632)
Q Consensus 233 ~-------~lI~~~-~L-~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~ 272 (632)
. .++... .+ ..++.-.+-|.-+.|+..-..-|...|+...
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 1 123332 22 2334446667777899887777778887543
No 417
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=90.88 E-value=0.48 Score=53.17 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=55.3
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC------EEEEECCCCCCCC---ccc-----ccCcee----cCCHHHHhccCCEEEEc
Q 006758 164 VLGIVGRSASARALATRSLSFKM------SVLYFDVPEGKGK---VTF-----PSAARR----MDTLNDLLAASDVISLH 225 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm------~V~~~dr~~~~~~---~~~-----~~g~~~----~~sL~eLL~~ADVV~l~ 225 (632)
+|.|||.|.+|..+++.|...|+ ++.++|...-... ..+ ..|... ...+.++-+...+....
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 47899999999999999999888 8999997653221 010 001100 12244555566666666
Q ss_pred cCCChhhHhhccHHHHhccCCCcEEEEc
Q 006758 226 CAVTDETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
...+++|..+++.+++... -++||+
T Consensus 81 ~~v~~~~~~~~~~~f~~~~---DvVi~a 105 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKL---DGVANA 105 (435)
T ss_pred cccChhhhhhhhHHHhcCC---CEEEEC
Confidence 6666667666766666544 366665
No 418
>PRK12742 oxidoreductase; Provisional
Probab=90.81 E-value=0.89 Score=44.86 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=31.4
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
.+.|+++.|.|. |.||+.+|+.|...|++|+...+.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~ 39 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAG 39 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 468999999995 899999999999999999877543
No 419
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=90.79 E-value=1.6 Score=46.52 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=71.9
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCE-EEEECCCCCCCCcccccCceecCCHHHHhcc--CCEEEEccCCChhhHhhc
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVTDETIQII 236 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--ADVV~l~lPlT~~T~~lI 236 (632)
...+|-|.|. |.+|..+.+.|..+|++ |+.++|..-..+ -.+...+.++.++-.. .|++++++|. +.+...+
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~---v~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l 82 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTT---VLGLPVFNTVAEAVEATGANASVIYVPP-PFAADAI 82 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCe---EeCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHH
Confidence 3456888887 77999999999998885 445676620111 2356677899999887 8999999995 3344454
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
. +..++=-+.++++.-+-+ +-|+.+|.+..+++.+.
T Consensus 83 ~-e~~~~gvk~avI~s~Gf~-~~~~~~l~~~a~~~gir 118 (291)
T PRK05678 83 L-EAIDAGIDLIVCITEGIP-VLDMLEVKAYLERKKTR 118 (291)
T ss_pred H-HHHHCCCCEEEEECCCCC-HHHHHHHHHHHHHcCCE
Confidence 3 333322235555555443 44555888888887765
No 420
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=90.72 E-value=0.79 Score=49.38 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=52.2
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCC-CEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 163 LVLGIVG-RSASARALATRSLSFK-MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
.+|+||| .|-.|+.+.+.|.... +++.....+.... ....++++.++|+||+++|... ..+.
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~----------~~~~~~~~~~~DvvFlalp~~~------s~~~ 66 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD----------AAARRELLNAADVAILCLPDDA------AREA 66 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc----------ccCchhhhcCCCEEEECCCHHH------HHHH
Confidence 4799999 7999999999998764 4666554332211 0233567788999999999532 2222
Q ss_pred Hhcc-CCCcEEEEcCC
Q 006758 241 LQHI-KPGAFLVNTGS 255 (632)
Q Consensus 241 L~~M-K~GAvLINvgR 255 (632)
...+ +.|..+|+.+.
T Consensus 67 ~~~~~~~g~~VIDlSa 82 (313)
T PRK11863 67 VALIDNPATRVIDAST 82 (313)
T ss_pred HHHHHhCCCEEEECCh
Confidence 2222 56899999884
No 421
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=90.68 E-value=0.95 Score=47.13 Aligned_cols=91 Identities=12% Similarity=0.130 Sum_probs=57.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCC-----------CEEEEECCCCCCCC-------------------------ccccc
Q 006758 161 RGLVLGIVGRSASARALATRSLSFK-----------MSVLYFDVPEGKGK-------------------------VTFPS 204 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG-----------m~V~~~dr~~~~~~-------------------------~~~~~ 204 (632)
+..+|.|||.|.+|..+++.|...| .++.++|...-... ..+..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~~ 89 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMGT 89 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccCc
Confidence 6789999999999999999998653 38999997642111 00000
Q ss_pred Cce----ecCCHHHHhccCCEEEEccCCChhhHhhccHHHHh--ccCCCcEEEEcCC
Q 006758 205 AAR----RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ--HIKPGAFLVNTGS 255 (632)
Q Consensus 205 g~~----~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~--~MK~GAvLINvgR 255 (632)
.+. .+.. ++++..+|+|+.|+= +-.++..|++.... .| ..++|+.|.
T Consensus 90 ~i~a~~~~~~~-~~~~~~~DiVi~avD-n~~aR~~l~~~~~~~~~~--~~~~ld~Gn 142 (244)
T TIGR03736 90 DWTAHPERVER-SSTLHRPDIVIGCVD-NRAARLAILRAFEGGYSG--YAYWLDLGN 142 (244)
T ss_pred eEEEEEeeeCc-hhhhcCCCEEEECCC-CHHHHHHHHHHHHHhccc--ccceecccC
Confidence 000 1111 344667888888875 45677777766555 22 246777775
No 422
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=90.61 E-value=0.91 Score=50.12 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=52.9
Q ss_pred ccCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccC
Q 006758 160 CRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 160 L~GktVGIIGlG----------~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
..|++|+|+|+. .-+..+++.|...|++|.+|||...... ..+....+++.+++..||+|++..-
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRM 368 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCC
Confidence 478999999993 5577999999999999999999854332 2256677899999999999988753
No 423
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=90.59 E-value=0.51 Score=49.66 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=32.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.|.+|.|.|.|.+|..+++.++++|++|++.+++..
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~ 204 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPS 204 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence 578899999999999999999999999999987653
No 424
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=90.56 E-value=0.78 Score=46.44 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=46.6
Q ss_pred cccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--cCce----ec----CCHHHHh-ccCCEEEEcc
Q 006758 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--SAAR----RM----DTLNDLL-AASDVISLHC 226 (632)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~--~g~~----~~----~sL~eLL-~~ADVV~l~l 226 (632)
...+++|.|+| .|.||+.+++.|...|++|+++.|+......... ..+. .. ..+.+.+ ...|+|+++.
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~ 93 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICAT 93 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECC
Confidence 35789999999 5999999999999999999988776432110000 0111 11 2234455 5789999776
Q ss_pred CC
Q 006758 227 AV 228 (632)
Q Consensus 227 Pl 228 (632)
+.
T Consensus 94 g~ 95 (251)
T PLN00141 94 GF 95 (251)
T ss_pred CC
Confidence 64
No 425
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.55 E-value=0.27 Score=45.56 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=30.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
.++|.|+|+|.+|..+|+.|...|+ ++.++|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 5789999999999999999999999 899999875
No 426
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.55 E-value=0.53 Score=47.81 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=34.3
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
..+.|+++.|.|. |.||+.+|+.|...|++|++.+++.
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 2 IGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3578999999996 8999999999999999999999875
No 427
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.53 E-value=0.48 Score=39.92 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=31.5
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG 198 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~ 198 (632)
+|.|||-|.+|-.+|..++.+|.+|.++.+...-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58899999999999999999999999999876443
No 428
>PRK06701 short chain dehydrogenase; Provisional
Probab=90.42 E-value=0.7 Score=48.13 Aligned_cols=38 Identities=24% Similarity=0.172 Sum_probs=33.8
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
..+.|+++.|.|. |.||..+|+.+...|++|+++++..
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4678999999995 7899999999999999999998764
No 429
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=90.41 E-value=2.2 Score=45.14 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=74.0
Q ss_pred hHHHHHHHhhCCCEEEEECCCCCCCCcc-----cccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCc
Q 006758 174 ARALATRSLSFKMSVLYFDVPEGKGKVT-----FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (632)
Q Consensus 174 G~~vA~~LkafGm~V~~~dr~~~~~~~~-----~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GA 248 (632)
|..||-.+...|..|+..+|+..-.+.. .+.|+...++=.+..+.+.+.++-.|....|.+|. .+.+.+++.||
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 6788888888999999999987433311 23355555666788899999999999999998876 57999999999
Q ss_pred EEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 249 FLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 249 vLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+|.|+...+.+ .|+..| ++.+.
T Consensus 112 VicnTCT~sp~---vLy~~L-E~~Lr 133 (340)
T COG4007 112 VICNTCTVSPV---VLYYSL-EGELR 133 (340)
T ss_pred EecccccCchh---HHHHHh-hhhhc
Confidence 99999987655 566666 44443
No 430
>PRK13529 malate dehydrogenase; Provisional
Probab=90.41 E-value=2.3 Score=49.19 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=130.1
Q ss_pred hcCCCceEEEEecccCCc-cchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCC
Q 006758 77 RRLRPYQLILCLGSSDRT-VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCR 155 (632)
Q Consensus 77 ~~lp~LK~I~~~gaG~D~-VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~ 155 (632)
...|+. +|+.=-.+..+ +.+..--+..|+++|.+--.+ |=-+++.+|+.+|-.
T Consensus 236 ~~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGT---aaV~LAgll~A~r~~---------------------- 289 (563)
T PRK13529 236 RRFPNA-LLQFEDFAQKNARRILERYRDEICTFNDDIQGT---GAVTLAGLLAALKIT---------------------- 289 (563)
T ss_pred HhCCCe-EEehhhcCCchHHHHHHHhccCCCeeccccchH---HHHHHHHHHHHHHHh----------------------
Confidence 345654 45543333322 333333345799999866443 444678888777531
Q ss_pred ccccccCcEEEEEeCChhhHHHHHHHhh----CCC-------EEEEECCCC---CCC-C-----cccccCce--------
Q 006758 156 GMRRCRGLVLGIVGRSASARALATRSLS----FKM-------SVLYFDVPE---GKG-K-----VTFPSAAR-------- 207 (632)
Q Consensus 156 ~~~~L~GktVGIIGlG~IG~~vA~~Lka----fGm-------~V~~~dr~~---~~~-~-----~~~~~g~~-------- 207 (632)
...|.+.+|.|+|.|..|..+|+.+.. .|+ +++.+|+.. ... . ..+.....
T Consensus 290 -g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~ 368 (563)
T PRK13529 290 -GEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTE 368 (563)
T ss_pred -CCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccc
Confidence 024789999999999999999999886 588 899999873 111 1 01111000
Q ss_pred -ecCCHHHHhccC--CEEEEccCCChhhHhhccHHHHhccCC---CcEEEEcCCChhhcHHHHHHHHH--cCC-cceEEe
Q 006758 208 -RMDTLNDLLAAS--DVISLHCAVTDETIQIINAECLQHIKP---GAFLVNTGSSQLLDDCAVKQLLI--DGT-LAGCAL 278 (632)
Q Consensus 208 -~~~sL~eLL~~A--DVV~l~lPlT~~T~~lI~~~~L~~MK~---GAvLINvgRG~iVDe~AL~~AL~--sg~-I~GAaL 278 (632)
...+|.|+++.+ |+++=+-- .-++|+++.++.|.+ ..+|.=.|.-....|+.-.+|.+ +|+ |.+.+.
T Consensus 369 ~~~~~L~e~v~~~kPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGs 444 (563)
T PRK13529 369 GDVISLLEVVRNVKPTVLIGVSG----QPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGS 444 (563)
T ss_pred cCCCCHHHHHhccCCCEEEEecC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECC
Confidence 124899999998 99876431 237999999999987 89999999877655555555555 343 332221
Q ss_pred ecCCCCCCCC---ccccCCCcEEEcCCCCCccH-----HHHHHHHHHHHHHHHHHH
Q 006758 279 DGAEGPQWME---AWVREMPNVLILPRSADYSE-----EVWMEIRDKAISVLQTFF 326 (632)
Q Consensus 279 DVfE~P~~~~---~pL~~~pNVIiTPHiAg~T~-----ea~~~~~~~a~~nL~~fL 326 (632)
- |.+ -..+ ..--...|+++=|=++-... ..-++|...+++-|..+.
T Consensus 445 p-f~p-v~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v 498 (563)
T PRK13529 445 P-FAP-VEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCV 498 (563)
T ss_pred C-CCC-eeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhC
Confidence 0 110 0000 00113568888887543221 123556666666666653
No 431
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=90.30 E-value=0.73 Score=44.18 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=56.6
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN-- 237 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~-- 237 (632)
..|++|++||+= +++++.++..+.+|.++|+++..... ..+.......++++++||+|++.-- -++|
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~~~~l~~aD~viiTGs------TlvN~T 77 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGE--EPGDVPDEDAEEILPWADVVIITGS------TLVNGT 77 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--S--SCT-EEGGGHHHHGGG-SEEEEECH------HCCTTT
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCC--CCCcCCHHHHHHHHccCCEEEEEee------eeecCC
Confidence 479999999961 24788888889999999998743321 1111234567889999999998743 1333
Q ss_pred -HHHHhccCCCcEEEEcCCCh
Q 006758 238 -AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 -~~~L~~MK~GAvLINvgRG~ 257 (632)
...|+..++++.+|=+|-..
T Consensus 78 i~~iL~~~~~~~~vil~GpS~ 98 (147)
T PF04016_consen 78 IDDILELARNAREVILYGPSA 98 (147)
T ss_dssp HHHHHHHTTTSSEEEEESCCG
T ss_pred HHHHHHhCccCCeEEEEecCc
Confidence 35677777777777666433
No 432
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.25 E-value=2 Score=47.73 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=67.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccc---cCceecC--CHHHHhccCCEEEEcc--CCC-hh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFP---SAARRMD--TLNDLLAASDVISLHC--AVT-DE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~---~g~~~~~--sL~eLL~~ADVV~l~l--PlT-~~ 231 (632)
.+-+|+|||+|.+|.++|+.|+..|++|.++|....... ..+. .++.... .-.+.+..+|+|+..- |.+ |.
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~ 84 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPA 84 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHH
Confidence 456899999999999999999999999999997643211 1111 1322211 1234567899887753 322 21
Q ss_pred hH-------hhccH-HHHhc-cCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 232 TI-------QIINA-ECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 232 T~-------~lI~~-~~L~~-MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
-. .++.+ +.+.. ++.-.+-|--+.|+.--..-+...|+.
T Consensus 85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 11 12332 23323 343456666667888777777777775
No 433
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=90.17 E-value=0.36 Score=48.59 Aligned_cols=66 Identities=24% Similarity=0.209 Sum_probs=46.6
Q ss_pred EEEEEeCChhhHHHHHH--HhhCCCE-EEEECCCCCCCCcc-cccCceecCCHHHHhc--cCCEEEEccCCC
Q 006758 164 VLGIVGRSASARALATR--SLSFKMS-VLYFDVPEGKGKVT-FPSAARRMDTLNDLLA--ASDVISLHCAVT 229 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~--LkafGm~-V~~~dr~~~~~~~~-~~~g~~~~~sL~eLL~--~ADVV~l~lPlT 229 (632)
.+.|||.|++|++++.. .+..||+ |.+||..+...-.. -+..++..++|+..++ +.|+.++|+|..
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~ 157 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAE 157 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHH
Confidence 58999999999999985 4468896 55678765422111 1122445677888888 688999999963
No 434
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=90.16 E-value=1.3 Score=48.26 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=65.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-------CCCEEEEECCC--CCC---------------CC----cccccCceecCCH
Q 006758 161 RGLVLGIVGRSASARALATRSLS-------FKMSVLYFDVP--EGK---------------GK----VTFPSAARRMDTL 212 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-------fGm~V~~~dr~--~~~---------------~~----~~~~~g~~~~~sL 212 (632)
.-++|+|||.|+=|+.+|+.+.. |..+|..|-.. ... .+ ...+..+..+.+|
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 45789999999999999998763 33344444221 111 00 1233345567889
Q ss_pred HHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 213 ~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
.+.+.+||+++..+|-+- +.. |-++...+.|+++..|...-|
T Consensus 100 ~ea~~dADilvf~vPhQf-~~~-ic~~l~g~vk~~~~aISL~KG 141 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQF-IPR-ICEQLKGYVKPGATAISLIKG 141 (372)
T ss_pred HHHhccCCEEEEeCChhh-HHH-HHHHHhcccCCCCeEEEeecc
Confidence 999999999999999633 233 346788889999999988766
No 435
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=90.16 E-value=0.51 Score=51.01 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=24.6
Q ss_pred EEEEEeCChhhHHHHHHHhhC----CCEEEEECC
Q 006758 164 VLGIVGRSASARALATRSLSF----KMSVLYFDV 193 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lkaf----Gm~V~~~dr 193 (632)
+|||+|+|+||+.+.+.|... +++|...+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 489999999999999998764 377777654
No 436
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=89.94 E-value=4 Score=47.51 Aligned_cols=193 Identities=13% Similarity=0.065 Sum_probs=118.4
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHH
Q 006758 102 DLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS 181 (632)
Q Consensus 102 erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L 181 (632)
+..|+++|.+--. +|=-+++.+|+.+|-. ...|.+.+|.|+|.|..|..+|+.+
T Consensus 287 r~~i~~FnDDiQG---TaaV~lAgll~A~r~~-----------------------g~~l~d~riv~~GAGsAgigia~ll 340 (581)
T PLN03129 287 RTTHLCFNDDIQG---TAAVALAGLLAALRAT-----------------------GGDLADQRILFAGAGEAGTGIAELI 340 (581)
T ss_pred ccCCCEeccccch---HHHHHHHHHHHHHHHh-----------------------CCchhhceEEEECCCHHHHHHHHHH
Confidence 4478888876543 4444677888777531 0347899999999999999999998
Q ss_pred hh-----CCC-------EEEEECCCCC--C-C-C------cccccCceecCCHHHHhcc--CCEEEEccCCChhhHhhcc
Q 006758 182 LS-----FKM-------SVLYFDVPEG--K-G-K------VTFPSAARRMDTLNDLLAA--SDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 182 ka-----fGm-------~V~~~dr~~~--~-~-~------~~~~~g~~~~~sL~eLL~~--ADVV~l~lPlT~~T~~lI~ 237 (632)
.. .|+ +++.+|+..- . . . ..+........+|.|+++. .|+++=+-- .-++|+
T Consensus 341 ~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft 416 (581)
T PLN03129 341 ALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSG----VGGTFT 416 (581)
T ss_pred HHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecC----CCCCCC
Confidence 76 476 8999998741 1 0 0 0111111234689999999 899976532 127899
Q ss_pred HHHHhccC---CCcEEEEcCCChhhcHHHHHHHHH--cCC-cceEEeecCCCCCCCC---ccccCCCcEEEcCCCCCccH
Q 006758 238 AECLQHIK---PGAFLVNTGSSQLLDDCAVKQLLI--DGT-LAGCALDGAEGPQWME---AWVREMPNVLILPRSADYSE 308 (632)
Q Consensus 238 ~~~L~~MK---~GAvLINvgRG~iVDe~AL~~AL~--sg~-I~GAaLDVfE~P~~~~---~pL~~~pNVIiTPHiAg~T~ 308 (632)
++.++.|. +..+|.=.+.-..-.|+--.+|++ +|+ |.+.+. -|.+ -..+ ..--...|+++=|=++-...
T Consensus 417 ~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGS-Pf~p-v~~~Gr~~~p~Q~NN~~iFPGiglGal 494 (581)
T PLN03129 417 KEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGS-PFDP-VEYNGKTFHPGQANNAYIFPGIGLGAL 494 (581)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCC-CCCC-eeeCCeeecCccccceeeccchhhHHH
Confidence 99999995 889999888765333333333333 354 332211 0110 0000 00114568888887553322
Q ss_pred -----HHHHHHHHHHHHHHHHHH
Q 006758 309 -----EVWMEIRDKAISVLQTFF 326 (632)
Q Consensus 309 -----ea~~~~~~~a~~nL~~fL 326 (632)
..-++|...+++.|..+.
T Consensus 495 ~~~a~~Itd~m~~aAA~aLA~~v 517 (581)
T PLN03129 495 LSGAIRVTDDMLLAAAEALAAQV 517 (581)
T ss_pred hcCCcCCCHHHHHHHHHHHHHhC
Confidence 223666666777777754
No 437
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=89.91 E-value=1 Score=47.74 Aligned_cols=33 Identities=18% Similarity=-0.036 Sum_probs=29.1
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
++|.|.|. |-||+.+++.|...|.+|+++++..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~ 34 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRS 34 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCC
Confidence 46788885 9999999999999999999998764
No 438
>PRK06182 short chain dehydrogenase; Validated
Probab=89.88 E-value=0.69 Score=47.11 Aligned_cols=36 Identities=19% Similarity=0.047 Sum_probs=31.9
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.++++.|.|. |.||+.+|+.|...|++|++.+++..
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~ 38 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD 38 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4788999995 89999999999999999999988753
No 439
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=89.87 E-value=0.3 Score=60.12 Aligned_cols=93 Identities=9% Similarity=0.029 Sum_probs=64.1
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC---------CCCc------------------------ccc---
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG---------KGKV------------------------TFP--- 203 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~---------~~~~------------------------~~~--- 203 (632)
+.-.+|.|+|.|++|+..++.+..+|++ . +++..- .... .|.
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~ 278 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKAD 278 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhh
Confidence 3457899999999999999999988766 1 222110 0000 000
Q ss_pred --cCc-eecCC-HHHHhccCCEEEEccCCChhhHhhccHH-HHhccCCCc----EEEEcC
Q 006758 204 --SAA-RRMDT-LNDLLAASDVISLHCAVTDETIQIINAE-CLQHIKPGA----FLVNTG 254 (632)
Q Consensus 204 --~g~-~~~~s-L~eLL~~ADVV~l~lPlT~~T~~lI~~~-~L~~MK~GA----vLINvg 254 (632)
..- .+... +++.++.+|+||.++-..+.+-.+|..+ ..+.||+|. +|++++
T Consensus 279 y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 279 YYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 000 00111 4578899999999998888888999988 777899998 888875
No 440
>PRK08324 short chain dehydrogenase; Validated
Probab=89.85 E-value=0.34 Score=56.87 Aligned_cols=39 Identities=23% Similarity=0.219 Sum_probs=34.9
Q ss_pred ccccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
..+.|+++.|.| .|.||..+|+.|...|++|++++++..
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~ 457 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence 357899999999 599999999999999999999998753
No 441
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=89.83 E-value=1.3 Score=45.00 Aligned_cols=63 Identities=17% Similarity=0.038 Sum_probs=43.0
Q ss_pred EEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee--cCCHHHHhccCCEEEEccCC
Q 006758 166 GIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR--MDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 166 GIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~--~~sL~eLL~~ADVV~l~lPl 228 (632)
.|.| .|-||+.+++.|..-|++|++++|+.............. ...+.+.+..+|+|+.+...
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~~ 67 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAGE 67 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCCC
Confidence 4666 699999999999999999999998765432111111111 13445677889998877754
No 442
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.83 E-value=0.44 Score=49.59 Aligned_cols=92 Identities=15% Similarity=0.017 Sum_probs=55.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCCcccccCc---eecC--CHH--HH--hccCCEEEEccCCCh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAA---RRMD--TLN--DL--LAASDVISLHCAVTD 230 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~~~~~~~~~~g~---~~~~--sL~--eL--L~~ADVV~l~lPlT~ 230 (632)
.|.+|.|+|.|.+|+.+++.+++.|++ |.+.+++..........+. .... ++. .. -...|+|+.+++...
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~ 238 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPK 238 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChH
Confidence 678999999999999999999999998 7888776432210000011 0000 110 01 134677777665311
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
.....+..|+++..+|+++...
T Consensus 239 -----~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 239 -----TLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred -----HHHHHHHHHhcCCEEEEEecCC
Confidence 1234456677777777776544
No 443
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.80 E-value=2.5 Score=46.87 Aligned_cols=111 Identities=10% Similarity=0.106 Sum_probs=69.4
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccc---cCceec-CC-HHHHhccCCEEEEccCCChhhH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFP---SAARRM-DT-LNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~---~g~~~~-~s-L~eLL~~ADVV~l~lPlT~~T~ 233 (632)
+.+++|.|+|.|.+|.++|+.|...|++|.++|....... ..+. .++... .. -+.++..+|+|+..--..+...
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 5689999999999999999999999999999997654311 1111 132221 11 2345568999988654433211
Q ss_pred h----------hccH-HHHhc-cC---CCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 234 Q----------IINA-ECLQH-IK---PGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 234 ~----------lI~~-~~L~~-MK---~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
- ++.. +.+.. ++ ...+-|--+.|+.--..-|...|+.
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~ 134 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK 134 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 1 2222 23333 32 2356666667888777777777775
No 444
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=89.80 E-value=1.2 Score=49.71 Aligned_cols=94 Identities=15% Similarity=0.074 Sum_probs=61.4
Q ss_pred cccCcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHH-HhccCCEEEEccC
Q 006758 159 RCRGLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND-LLAASDVISLHCA 227 (632)
Q Consensus 159 ~L~GktVGIIGl----------G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~e-LL~~ADVV~l~lP 227 (632)
.+.|++|+|+|+ ..-+..+++.|...|.+|.+|||...........+ ...+++ .+..||+|+++..
T Consensus 311 ~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~---~~~~~~~~~~~ad~vvi~t~ 387 (425)
T PRK15182 311 NVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYG---IIPVSEVKSSHYDAIIVAVG 387 (425)
T ss_pred CCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcC---cccchhhhhcCCCEEEEccC
Confidence 478999999998 56788999999999999999999843211000011 111222 3678999999987
Q ss_pred CChhhHhhccHHHHh-ccCCCcEEEEcCCChh
Q 006758 228 VTDETIQIINAECLQ-HIKPGAFLVNTGSSQL 258 (632)
Q Consensus 228 lT~~T~~lI~~~~L~-~MK~GAvLINvgRG~i 258 (632)
.. +-+. ++-+.+. .|+...+||+ +|+-+
T Consensus 388 h~-~f~~-~~~~~~~~~~~~~~~iiD-~r~~~ 416 (425)
T PRK15182 388 HQ-QFKQ-MGSEDIRGFGKDKHVLYD-LKYVL 416 (425)
T ss_pred CH-Hhhc-CCHHHHHHhcCCCCEEEE-CCCCC
Confidence 63 3222 4444444 4554468888 46544
No 445
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=89.78 E-value=1 Score=48.52 Aligned_cols=89 Identities=13% Similarity=0.212 Sum_probs=53.5
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCC---EEEEECCCCCCCCccccc-C-ceecCCHH-HHhccCCEEEEccCCChhhHh
Q 006758 162 GLVLGIVG-RSASARALATRSLSFKM---SVLYFDVPEGKGKVTFPS-A-ARRMDTLN-DLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafGm---~V~~~dr~~~~~~~~~~~-g-~~~~~sL~-eLL~~ADVV~l~lPlT~~T~~ 234 (632)
+++|+||| .|.+|+.+.+.|...|+ ++.++.+.....+. +.. + ...+.+++ ..+..+|+||+|+|.. .++.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~-l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~ 78 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKE-LSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKK 78 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCe-eeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHH
Confidence 35799998 48999999999998544 55666544333321 111 1 11112222 3457899999999853 2333
Q ss_pred hccHHHHhccCCCcEEEEcCCC
Q 006758 235 IINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG 256 (632)
+.. ..++.|+++|+.+..
T Consensus 79 ~~~----~~~~~G~~VIDlS~~ 96 (334)
T PRK14874 79 YAP----KAAAAGAVVIDNSSA 96 (334)
T ss_pred HHH----HHHhCCCEEEECCch
Confidence 221 123578999998753
No 446
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=89.78 E-value=0.52 Score=48.70 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=45.8
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-------eecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|.|+|. |.||+.+++.|...|.+|.+++++..........+. ....++.+++..+|+|+.+.+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~ 74 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAAD 74 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEecee
Confidence 36889985 999999999999999999999987543211000111 1123466778889998877643
No 447
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=89.74 E-value=1.2 Score=48.05 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=52.6
Q ss_pred EEEEEeC-ChhhHHHHHHHhhC-CCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHH
Q 006758 164 VLGIVGR-SASARALATRSLSF-KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (632)
Q Consensus 164 tVGIIGl-G~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L 241 (632)
+|+|+|. |-.|..+.++|... .+++........ +. ..+.++++.++|+||+++|.. .+..+. . .+
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-----~~-----~~~~~~~~~~~D~vFlalp~~-~s~~~~-~-~~ 69 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-----KD-----AAERAKLLNAADVAILCLPDD-AAREAV-S-LV 69 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-----cC-----cCCHhHhhcCCCEEEECCCHH-HHHHHH-H-HH
Confidence 6899985 88999999999975 567776644322 10 124567888999999999963 223332 1 11
Q ss_pred hccCCCcEEEEcCC
Q 006758 242 QHIKPGAFLVNTGS 255 (632)
Q Consensus 242 ~~MK~GAvLINvgR 255 (632)
...|+.+|+.+-
T Consensus 70 --~~~g~~VIDlSa 81 (310)
T TIGR01851 70 --DNPNTCIIDAST 81 (310)
T ss_pred --HhCCCEEEECCh
Confidence 246889999884
No 448
>PRK14852 hypothetical protein; Provisional
Probab=89.70 E-value=0.59 Score=57.04 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=33.6
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~ 194 (632)
+..|+.++|+|||+|.+|..+|..|...|. ++..+|..
T Consensus 327 Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D 365 (989)
T PRK14852 327 QRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFD 365 (989)
T ss_pred HHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 357899999999999999999999999988 67777765
No 449
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.63 E-value=1 Score=48.02 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=53.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CC-CEEEEECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCC--ChhhHh
Q 006758 161 RGLVLGIVGRSASARALATRSLS-FK-MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAV--TDETIQ 234 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG-m~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPl--T~~T~~ 234 (632)
.|.+|.|+|.|.||..++..++. +| .+|++++++....+.....+... .++++.. ..|+|+-++.. ++.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G~~~~~~--- 237 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVGGRGSQS--- 237 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCCCCccHH---
Confidence 58899999999999999988885 54 68999998754332111111111 1122222 36777777653 122
Q ss_pred hccHHHHhccCCCcEEEEcC
Q 006758 235 IINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvg 254 (632)
.+ ...+..++++..+|.+|
T Consensus 238 ~~-~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 238 AI-NQIIDYIRPQGTIGLMG 256 (341)
T ss_pred HH-HHHHHhCcCCcEEEEEe
Confidence 12 24566677777777665
No 450
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=89.39 E-value=1.3 Score=50.95 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=46.6
Q ss_pred ccCcEEEEEeC---ChhhHHHHHHHhhCC-CEEEEECCCCCCCCccc-----ccC--ceecCCHHHHhccCCE
Q 006758 160 CRGLVLGIVGR---SASARALATRSLSFK-MSVLYFDVPEGKGKVTF-----PSA--ARRMDTLNDLLAASDV 221 (632)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~~-----~~g--~~~~~sL~eLL~~ADV 221 (632)
+.|.+|++||= |++..+++..+..|| |+|.+..|..-.....+ ..| .....++++.+++||+
T Consensus 172 l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~ 244 (525)
T PRK13376 172 NSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDV 244 (525)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCc
Confidence 68999999998 588999999999998 99999998643211111 112 3346789999999995
No 451
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=89.32 E-value=0.81 Score=49.76 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=32.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|.+|.|.|.|.||..+++.++++|++|++.++..
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 58899999999999999999999999999887654
No 452
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=89.31 E-value=0.2 Score=49.94 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=70.1
Q ss_pred EEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCC-cc-cccCc-------eecCCHHHHhccCCEEEEccCCC-h---
Q 006758 165 LGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGK-VT-FPSAA-------RRMDTLNDLLAASDVISLHCAVT-D--- 230 (632)
Q Consensus 165 VGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~-~~~g~-------~~~~sL~eLL~~ADVV~l~lPlT-~--- 230 (632)
|.|+|. |.+|+.+++.|..-+++|.+.-|...... .. ...++ ...++|.+.|..+|+|++++|.. +
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~ 80 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL 80 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence 678995 99999999999999999999988763211 00 01111 12356778899999999999954 1
Q ss_pred -hhHhhccHHHHhccCCCcEEEEcCCCh-----------hhcH-HHHHHHHHcCCcceEEee
Q 006758 231 -ETIQIINAECLQHIKPGAFLVNTGSSQ-----------LLDD-CAVKQLLIDGTLAGCALD 279 (632)
Q Consensus 231 -~T~~lI~~~~L~~MK~GAvLINvgRG~-----------iVDe-~AL~~AL~sg~I~GAaLD 279 (632)
....++++..-+..| --+.-..+... ..+. ..+.+.|++..+....+-
T Consensus 81 ~~~~~li~Aa~~agVk-~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~t~i~ 141 (233)
T PF05368_consen 81 EQQKNLIDAAKAAGVK-HFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPYTIIR 141 (233)
T ss_dssp HHHHHHHHHHHHHT-S-EEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEBEEEE
T ss_pred hhhhhHHHhhhccccc-eEEEEEecccccccccccccchhhhhhhhhhhhhhhccccceecc
Confidence 355666665555443 22222333322 1122 245667777776654444
No 453
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=89.22 E-value=0.68 Score=49.41 Aligned_cols=37 Identities=16% Similarity=-0.003 Sum_probs=33.1
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+++++|.|.|. |-||..+++.|...|.+|+++|+..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 367899999995 9999999999999999999999753
No 454
>PRK12937 short chain dehydrogenase; Provisional
Probab=89.22 E-value=1.6 Score=43.18 Aligned_cols=35 Identities=17% Similarity=0.026 Sum_probs=30.8
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
+.++++.|.|. |.||+.+|+.+...|++|+...+.
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 57899999995 999999999999999999877654
No 455
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.16 E-value=0.62 Score=49.54 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=32.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.|.+|.|+|.|.||..+++.+++.|++|++.+++..
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~ 201 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPE 201 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence 588999999999999999999999999999887653
No 456
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.01 E-value=3.2 Score=46.13 Aligned_cols=112 Identities=10% Similarity=0.097 Sum_probs=67.3
Q ss_pred cccC-cEEEEEeCChhhHHHHHHHhhC--CCEEEEECCCCCCCC-cccccCceec-C-CHHHHhccCCEEEEccCCCh--
Q 006758 159 RCRG-LVLGIVGRSASARALATRSLSF--KMSVLYFDVPEGKGK-VTFPSAARRM-D-TLNDLLAASDVISLHCAVTD-- 230 (632)
Q Consensus 159 ~L~G-ktVGIIGlG~IG~~vA~~Lkaf--Gm~V~~~dr~~~~~~-~~~~~g~~~~-~-sL~eLL~~ADVV~l~lPlT~-- 230 (632)
++.+ ++|.|||+|.+|.+.++.|... |++|.++|....... ..+..++... . .-.+.+.++|+|+..--..+
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~ 82 (438)
T PRK04663 3 RWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIALAT 82 (438)
T ss_pred cccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCCCCC
Confidence 3566 7899999999999999999977 589999996542211 1122233221 1 11234578998887543322
Q ss_pred -hhH-------hhccHH-HH-hccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 231 -ETI-------QIINAE-CL-QHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 231 -~T~-------~lI~~~-~L-~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
... .++.+- .+ ..++.-.+-|--+-|+.--..-|...|..
T Consensus 83 p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 83 PEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 211 123322 32 23344456666667888777767777764
No 457
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=88.98 E-value=0.79 Score=46.00 Aligned_cols=37 Identities=16% Similarity=0.026 Sum_probs=33.7
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.|+++.|.|. |.||..+|+.|...|++|++.+++.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999995 9999999999999999999998875
No 458
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=88.90 E-value=0.88 Score=45.01 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=33.6
Q ss_pred cccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.++++.|.| .|.||..+++.|...|++|++.+|+.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~ 40 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG 40 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46789999999 79999999999999999999999874
No 459
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=88.84 E-value=1 Score=48.40 Aligned_cols=67 Identities=9% Similarity=0.066 Sum_probs=50.5
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----c--ccc-CceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKV-----T--FPS-AARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----~--~~~-g~~~~~sL~eLL~~ADVV~l~l 226 (632)
+.|++|++||- +++..+++..+..||++|.+..|..-.... . ... .+....++++.++.+|||..-.
T Consensus 151 l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~ 226 (311)
T PRK14804 151 LNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT 226 (311)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence 68999999997 689999999999999999999986521110 0 001 2233578999999999998843
No 460
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=88.79 E-value=1 Score=48.60 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=31.2
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~ 197 (632)
+|+|||-|..|..+++.++.+|++|+++|+++..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~ 34 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANA 34 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 5899999999999999999999999999987643
No 461
>PLN02206 UDP-glucuronate decarboxylase
Probab=88.73 E-value=2 Score=48.19 Aligned_cols=68 Identities=22% Similarity=0.191 Sum_probs=45.6
Q ss_pred ccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----cc-cC--ceecCCHHHHhccCCEEEEccC
Q 006758 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT----FP-SA--ARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~----~~-~g--~~~~~sL~eLL~~ADVV~l~lP 227 (632)
-++++|.|.| .|-||+.+++.|...|.+|+++|+........ +. .. ....+-++.++..+|+|+-+.-
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlAa 192 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIYHLAC 192 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEEEeee
Confidence 4779999999 59999999999999999999998643211100 00 01 1122334556678898876653
No 462
>PRK07856 short chain dehydrogenase; Provisional
Probab=88.72 E-value=0.68 Score=46.51 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=33.2
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
++.|+++.|.|. |.||+.+|+.|...|++|++.+++.
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 468999999996 6899999999999999999999875
No 463
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=88.70 E-value=1.5 Score=47.61 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=51.2
Q ss_pred cEEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCC-CCCCcc---ccc-----------C-ceecCCHHHHhccCCEEEE
Q 006758 163 LVLGIVG-RSASARALATRSLSF-KMSVLYFDVPE-GKGKVT---FPS-----------A-ARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lkaf-Gm~V~~~dr~~-~~~~~~---~~~-----------g-~~~~~sL~eLL~~ADVV~l 224 (632)
.+|+|+| .|.+|+.+.+.|..+ .+++.++..+. ..+... ++. . .....+.++ +.++|+|+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence 5899998 999999999999876 45888873222 222110 000 0 011123444 478999999
Q ss_pred ccCCChhhHhhccHHHHhcc-CCCcEEEEcCC
Q 006758 225 HCAVTDETIQIINAECLQHI-KPGAFLVNTGS 255 (632)
Q Consensus 225 ~lPlT~~T~~lI~~~~L~~M-K~GAvLINvgR 255 (632)
++|-... ..++ ..+ +.|..+|+.+-
T Consensus 83 a~p~~~s-~~~~-----~~~~~~G~~vIDls~ 108 (349)
T PRK08664 83 ALPSDVA-GEVE-----EEFAKAGKPVFSNAS 108 (349)
T ss_pred eCChhHH-HHHH-----HHHHHCCCEEEECCc
Confidence 9996322 2222 222 35776777653
No 464
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=88.64 E-value=1.3 Score=48.36 Aligned_cols=88 Identities=16% Similarity=0.300 Sum_probs=53.7
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhh-CCCE---EEEECCCCCCCCc-ccccCceec--CCHHHHhccCCEEEEccCCChhh
Q 006758 161 RGLVLGIVGR-SASARALATRSLS-FKMS---VLYFDVPEGKGKV-TFPSAARRM--DTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~Lka-fGm~---V~~~dr~~~~~~~-~~~~g~~~~--~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
++.+|||||. |.+|+.+.+.|.. -.+. +..+......++. .+......+ .+.++ +.++|+|++++|.. .+
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s 81 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VS 81 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HH
Confidence 4568999998 9999999999984 4555 5555443333321 111111111 23333 47899999999853 22
Q ss_pred HhhccHHHHhc-cCCCcEEEEcCC
Q 006758 233 IQIINAECLQH-IKPGAFLVNTGS 255 (632)
Q Consensus 233 ~~lI~~~~L~~-MK~GAvLINvgR 255 (632)
.+.... .+.|+++|+.+.
T Consensus 82 -----~~~~~~~~~~G~~VID~Ss 100 (347)
T PRK06728 82 -----RQFVNQAVSSGAIVIDNTS 100 (347)
T ss_pred -----HHHHHHHHHCCCEEEECch
Confidence 222222 357999999883
No 465
>PLN02427 UDP-apiose/xylose synthase
Probab=88.63 E-value=0.76 Score=49.64 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=47.7
Q ss_pred ccccCcEEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCCCCCCcc-------ccc-------CceecCCHHHHhccCCE
Q 006758 158 RRCRGLVLGIVG-RSASARALATRSLSF-KMSVLYFDVPEGKGKVT-------FPS-------AARRMDTLNDLLAASDV 221 (632)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~-------~~~-------g~~~~~sL~eLL~~ADV 221 (632)
+.++.++|.|.| .|-||+.+++.|... |.+|+++++........ ... .......+.+++..+|+
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 457788999999 599999999999987 59999999764221100 000 11112346677888998
Q ss_pred EEEccC
Q 006758 222 ISLHCA 227 (632)
Q Consensus 222 V~l~lP 227 (632)
|+-+.-
T Consensus 90 ViHlAa 95 (386)
T PLN02427 90 TINLAA 95 (386)
T ss_pred EEEccc
Confidence 876653
No 466
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=88.58 E-value=2.4 Score=46.98 Aligned_cols=103 Identities=11% Similarity=0.026 Sum_probs=60.4
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEE--CCCCCCCC-------c---ccccCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGR-SASARALATRSLSFKM-------SVLYF--DVPEGKGK-------V---TFPSAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm-------~V~~~--dr~~~~~~-------~---~~~~g~~~~~sL~eLL~~ADVV 222 (632)
.+|+|||. |.+|..+|-.+..-|+ .+..+ |......+ . .+...+.....-.+.+++||+|
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV 124 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA 124 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence 57999999 9999999998875443 34445 65543222 0 1111122123456889999999
Q ss_pred EEccCCC--h-hh--------Hhhcc--HHHHhc-cCCCcEEEEcCCChhhcHHHHHHH
Q 006758 223 SLHCAVT--D-ET--------IQIIN--AECLQH-IKPGAFLVNTGSSQLLDDCAVKQL 267 (632)
Q Consensus 223 ~l~lPlT--~-~T--------~~lI~--~~~L~~-MK~GAvLINvgRG~iVDe~AL~~A 267 (632)
+++.-.. + +| ..++. ...+.. -+|.+++|.++ ..+|.-+.+-.
T Consensus 125 VitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v~~ 181 (387)
T TIGR01757 125 LLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALIAM 181 (387)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHHHH
Confidence 9976542 2 12 22221 112333 44889999887 56666554443
No 467
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=88.55 E-value=2.8 Score=39.67 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=68.3
Q ss_pred HHHHHHHhhCCCEEEEECCCCCCC---Ccccc-cCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEE
Q 006758 175 RALATRSLSFKMSVLYFDVPEGKG---KVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFL 250 (632)
Q Consensus 175 ~~vA~~LkafGm~V~~~dr~~~~~---~~~~~-~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvL 250 (632)
=..+++|...|++|++=.-..... +..|. .|+.-..+-++++.+||+|+..=|.+ .+.++.|++|.++
T Consensus 17 P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~l 88 (136)
T PF05222_consen 17 PEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTL 88 (136)
T ss_dssp HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEE
T ss_pred HHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEE
Confidence 456677888899999865442211 12232 35555566779999999998887653 5678889999999
Q ss_pred EEcCCChhhcHHHHHHHHHcCCcceEEeecCCC
Q 006758 251 VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG 283 (632)
Q Consensus 251 INvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~ 283 (632)
|-...-. ....+++.|.++++...++|....
T Consensus 89 i~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 89 IGFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred EEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 9876644 588899999999999888886643
No 468
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=88.43 E-value=0.81 Score=50.18 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=33.2
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
...|++|.|+|. |.||+.+++.|...|.+|++++|+.
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 457889999996 9999999999999999999999875
No 469
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=88.38 E-value=1.2 Score=48.42 Aligned_cols=87 Identities=11% Similarity=0.158 Sum_probs=51.5
Q ss_pred EEEEEe-CChhhHHHHHHHhhCCC---EEEEECCCCCCCCcccccCc-eecCCH-HHHhccCCEEEEccCCChhhHhhcc
Q 006758 164 VLGIVG-RSASARALATRSLSFKM---SVLYFDVPEGKGKVTFPSAA-RRMDTL-NDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 164 tVGIIG-lG~IG~~vA~~LkafGm---~V~~~dr~~~~~~~~~~~g~-~~~~sL-~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
+|+||| .|.+|+.+.+.|...++ ++.++.+....+......+. ..+.++ .+.+..+|+|++|+|.. .+..+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence 489999 89999999999988555 34455444333321111111 111122 23458899999999953 222221
Q ss_pred HHHHhccCCCcEEEEcCC
Q 006758 238 AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgR 255 (632)
.. .++.|+++|+.+.
T Consensus 79 ~~---~~~~G~~VID~ss 93 (339)
T TIGR01296 79 PK---AAKCGAIVIDNTS 93 (339)
T ss_pred HH---HHHCCCEEEECCH
Confidence 11 2356889998874
No 470
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=88.37 E-value=0.8 Score=47.89 Aligned_cols=35 Identities=9% Similarity=-0.053 Sum_probs=31.4
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|.+|.|.| .|.+|..+++.++.+|++|++.+++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~ 173 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSD 173 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 588999999 59999999999999999999887664
No 471
>PRK04148 hypothetical protein; Provisional
Probab=88.35 E-value=0.62 Score=44.36 Aligned_cols=67 Identities=9% Similarity=-0.021 Sum_probs=44.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc--ee---cCCHHHHhccCCEEEEccCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--RR---MDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~--~~---~~sL~eLL~~ADVV~l~lPl 228 (632)
+++++.+||+| -|..+|..|...|.+|++.|.++...+.....+. .. ...--++-..+|+|--+-|-
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCC
Confidence 56889999999 8999999999999999999988753321111111 11 11223456666766666554
No 472
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=88.24 E-value=0.77 Score=47.78 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=55.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee-cC----C-HHHHhccCCEEEEccCCChhhHh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-MD----T-LNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~-~~----s-L~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
.|.+|.|+|.|.+|+.+++.++.+|++|++.+++....+.....+... .. . ........|+|+.++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~---- 237 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA---- 237 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence 578899999999999999999999999999887653221100011100 00 0 0011234677777654311
Q ss_pred hccHHHHhccCCCcEEEEcCC
Q 006758 235 IINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgR 255 (632)
.....+..|+++..+|+++.
T Consensus 238 -~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 238 -AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -HHHHHHHhcccCCEEEEECC
Confidence 12445677888888888764
No 473
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=88.20 E-value=0.84 Score=46.23 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=56.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCCcccccC-ceecCC-HHHH--hccCCEEEEccCCChhhHhh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSA-ARRMDT-LNDL--LAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~~~~~~~~~~g-~~~~~s-L~eL--L~~ADVV~l~lPlT~~T~~l 235 (632)
.|.+|.|.|.|.+|..+.+.++++|++ |++.++...........+ ...... .+.. -...|+|+.++.... .
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----~ 172 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----A 172 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----H
Confidence 688999999999999999999999999 888886543221100011 000000 1111 124688877665322 1
Q ss_pred ccHHHHhccCCCcEEEEcCCC
Q 006758 236 INAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG 256 (632)
+ ...+..|+++..++++|-.
T Consensus 173 ~-~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 173 L-ETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred H-HHHHHHhcCCcEEEEEecc
Confidence 2 4456778888888887653
No 474
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.19 E-value=1.3 Score=44.79 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=32.6
Q ss_pred ccccCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCC
Q 006758 158 RRCRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 158 ~~L~GktVGIIGlG---~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
..|.|+++.|.|.+ .||..+|+.+...|++|++.++.
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~ 41 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWT 41 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecc
Confidence 45899999999985 69999999999999999987643
No 475
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=88.17 E-value=1.8 Score=47.09 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=52.9
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCC---EEEEECCCCCCCCcccccCc-eecCCHH-HHhccCCEEEEccCCChhhHh
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKM---SVLYFDVPEGKGKVTFPSAA-RRMDTLN-DLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm---~V~~~dr~~~~~~~~~~~g~-~~~~sL~-eLL~~ADVV~l~lPlT~~T~~ 234 (632)
...+|+|||. |.+|+.+.+.|..-++ ++.++......++.....+. ..+.+++ +.+..+|+|++++|.. ....
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~ 84 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKK 84 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHH
Confidence 4578999995 8999999999987433 55444433222221111111 1122222 4558899999999963 2223
Q ss_pred hccHHHHhc-cCCCcEEEEcCC
Q 006758 235 IINAECLQH-IKPGAFLVNTGS 255 (632)
Q Consensus 235 lI~~~~L~~-MK~GAvLINvgR 255 (632)
+ ... .+.|+.+|+.+-
T Consensus 85 ~-----~~~~~~~g~~VIDlS~ 101 (344)
T PLN02383 85 F-----GPIAVDKGAVVVDNSS 101 (344)
T ss_pred H-----HHHHHhCCCEEEECCc
Confidence 3 222 256999999983
No 476
>PLN02740 Alcohol dehydrogenase-like
Probab=88.12 E-value=1 Score=48.71 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=32.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~ 196 (632)
.|.+|.|+|.|.||..+++.++.+|+ +|++.+++..
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~ 234 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE 234 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH
Confidence 68999999999999999999999999 6998887653
No 477
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=88.09 E-value=0.95 Score=48.21 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=47.9
Q ss_pred ccccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc---c---------cccCceecCCHHHHhccCCEEEE
Q 006758 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV---T---------FPSAARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---~---------~~~g~~~~~sL~eLL~~ADVV~l 224 (632)
++-.+++|.|.| .|-||+.+++.|...|.+|++.++....... . ..........+.+++...|+|+.
T Consensus 6 ~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 6 RESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 456889999999 5999999999999999999998775422110 0 00011112235667778898777
Q ss_pred ccCC
Q 006758 225 HCAV 228 (632)
Q Consensus 225 ~lPl 228 (632)
+...
T Consensus 86 ~A~~ 89 (353)
T PLN02896 86 VAAS 89 (353)
T ss_pred CCcc
Confidence 6643
No 478
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=87.94 E-value=1.2 Score=46.84 Aligned_cols=108 Identities=7% Similarity=0.101 Sum_probs=75.1
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhC----CC-------EEEEECCCC----CCCC-----cccccCcee---cCCHHHH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSF----KM-------SVLYFDVPE----GKGK-----VTFPSAARR---MDTLNDL 215 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lkaf----Gm-------~V~~~dr~~----~~~~-----~~~~~g~~~---~~sL~eL 215 (632)
.|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+.. .... ..+...... ..+|.|+
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~ea 101 (255)
T PF03949_consen 22 KLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEA 101 (255)
T ss_dssp -GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHH
T ss_pred CHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCHHHH
Confidence 48999999999999999999999887 88 589999873 1111 111111111 1489999
Q ss_pred hccC--CEEEEccCCChhhHhhccHHHHhccCC---CcEEEEcCCChhhcHHHHHHHHHc
Q 006758 216 LAAS--DVISLHCAVTDETIQIINAECLQHIKP---GAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 216 L~~A--DVV~l~lPlT~~T~~lI~~~~L~~MK~---GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
++.+ |+++=+-- .-++|+++.++.|.+ ..+|.=.+.-..-.|+.-.+|.+-
T Consensus 102 v~~~kPtvLIG~S~----~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~ 157 (255)
T PF03949_consen 102 VKGAKPTVLIGLSG----QGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEW 157 (255)
T ss_dssp HHCH--SEEEECSS----STTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHT
T ss_pred HHhcCCCEEEEecC----CCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhh
Confidence 9999 99987642 358999999999987 899999998777556555566554
No 479
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=87.93 E-value=1.2 Score=46.56 Aligned_cols=67 Identities=10% Similarity=0.013 Sum_probs=46.4
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCc---------------ccccCceecCCHHHHhccCCEEEE
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKV---------------TFPSAARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~---------------~~~~g~~~~~sL~eLL~~ADVV~l 224 (632)
.|+++.|.|. |-||+.+++.|...|++|++..++...... .+........++.+++...|+|+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 4789999995 999999999999999999887665432110 000111223456677888998887
Q ss_pred ccC
Q 006758 225 HCA 227 (632)
Q Consensus 225 ~lP 227 (632)
+..
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 764
No 480
>PRK06194 hypothetical protein; Provisional
Probab=87.87 E-value=0.58 Score=47.87 Aligned_cols=37 Identities=27% Similarity=0.277 Sum_probs=32.9
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.++++.|.|. |.||+.+|+.|...|++|++++++.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~ 40 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQ 40 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 467899999985 7899999999999999999999864
No 481
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=87.83 E-value=1.2 Score=47.94 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=45.4
Q ss_pred cEEEEEeCChhhHHHHHHHhh--CCCEEEEECCCCCCCC-ccc--cc-------CceecC-CHHHHhccCCEEEEcc--C
Q 006758 163 LVLGIVGRSASARALATRSLS--FKMSVLYFDVPEGKGK-VTF--PS-------AARRMD-TLNDLLAASDVISLHC--A 227 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka--fGm~V~~~dr~~~~~~-~~~--~~-------g~~~~~-sL~eLL~~ADVV~l~l--P 227 (632)
++|+|||.|.||+.+|-.|.. ++-++..||......+ ... .. ...... .=.+.+..||+|+++. |
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 479999999999999999853 5558999998843222 000 00 011111 1156789999999998 5
Q ss_pred CChh
Q 006758 228 VTDE 231 (632)
Q Consensus 228 lT~~ 231 (632)
-.|.
T Consensus 81 rKpG 84 (313)
T COG0039 81 RKPG 84 (313)
T ss_pred CCCC
Confidence 5553
No 482
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=87.75 E-value=0.95 Score=47.59 Aligned_cols=35 Identities=6% Similarity=0.069 Sum_probs=32.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|.+|.|.|.|.+|..++..++++|++|++.+++.
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~ 197 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGS 197 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCh
Confidence 57899999999999999999999999999988764
No 483
>PRK12367 short chain dehydrogenase; Provisional
Probab=87.74 E-value=1.1 Score=45.93 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=33.7
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
..+.|+++.|.|. |.||+.+|+.+...|++|++.+++.
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 3578999999997 6799999999999999999998765
No 484
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=87.73 E-value=1.3 Score=46.77 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=31.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
.|.+|.|.|.|.+|..+++.++.+|+ .|++.+++.
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~ 207 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSE 207 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 58899999999999999999999999 788887654
No 485
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.66 E-value=0.44 Score=51.45 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=39.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCceec
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRM 209 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~~ 209 (632)
.|.+++|+|+|.+|.+++.-++++|+ +|+++|.+...-+.....|+...
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~ 241 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEF 241 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCccee
Confidence 78999999999999999999999998 89999998754433333344333
No 486
>PRK12828 short chain dehydrogenase; Provisional
Probab=87.65 E-value=1.9 Score=42.23 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=34.0
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.+.|+++.|+|. |.||+.+++.+..-|++|++++|+..
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~ 42 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA 42 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence 478999999985 99999999999989999999998753
No 487
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=87.54 E-value=1.1 Score=47.74 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=32.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~~ 196 (632)
.|.+|.|+|.|.+|..+++.++.+|++ |++.+++..
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~ 212 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR 212 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 588999999999999999999999995 888887653
No 488
>PRK06500 short chain dehydrogenase; Provisional
Probab=87.37 E-value=1.1 Score=44.41 Aligned_cols=37 Identities=22% Similarity=0.069 Sum_probs=33.1
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.|+++.|.|. |.||+.+++.|...|++|++.+++.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~ 40 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDP 40 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH
Confidence 367899999996 9999999999999999999998864
No 489
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.34 E-value=0.74 Score=45.58 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=33.5
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+.|+++.|+|. |.||..+|+.+...|++|++++++.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 68999999998 9999999999999999999999875
No 490
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=87.26 E-value=0.89 Score=48.83 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=32.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~ 196 (632)
.|.+|.|+|.|.||..+++.++..|+ +|++.+++..
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~ 227 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNED 227 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHH
Confidence 58899999999999999999999999 6988887653
No 491
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.24 E-value=0.52 Score=47.21 Aligned_cols=113 Identities=16% Similarity=0.169 Sum_probs=68.0
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcc--cccC-ce-----------------ecCCHHHHhc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVT--FPSA-AR-----------------RMDTLNDLLA 217 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~--~~~g-~~-----------------~~~sL~eLL~ 217 (632)
.|.|+.|.+-|.|. ||+.+...|...|.+|+.+.|++...... +..+ +. .+-.++-|..
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidgLVN 83 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDGLVN 83 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhhhhc
Confidence 47899999999885 99999999999999999999986433200 0001 00 0111222222
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
++-+-++| |..+-|+.-| +..+=||+ |+-+.-.+-..+.|-...+.||...|..
T Consensus 84 NAgvA~~~-pf~eiT~q~f---------Dr~F~VNv-ravi~v~Q~var~lv~R~~~GaIVNvSS 137 (245)
T KOG1207|consen 84 NAGVATNH-PFGEITQQSF---------DRTFAVNV-RAVILVAQLVARNLVDRQIKGAIVNVSS 137 (245)
T ss_pred cchhhhcc-hHHHHhHHhh---------cceeeeee-eeeeeHHHHHHHhhhhccCCceEEEecc
Confidence 22222222 1111122111 23455776 6666666677778888888888888865
No 492
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=87.19 E-value=1.3 Score=47.70 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=49.7
Q ss_pred cccCcEEEEEe---CChhhHHHHHHHhhCCCEEEEECCCCCCCC----ccccc---CceecCCHHHHhccCCEEEE
Q 006758 159 RCRGLVLGIVG---RSASARALATRSLSFKMSVLYFDVPEGKGK----VTFPS---AARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 159 ~L~GktVGIIG---lG~IG~~vA~~LkafGm~V~~~dr~~~~~~----~~~~~---g~~~~~sL~eLL~~ADVV~l 224 (632)
++.|++|+|+| +|+...+.+..|..||.+|..+.|..-... ..... .....+.++|.+.++||+.+
T Consensus 155 ~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~ 230 (316)
T COG0540 155 RLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYM 230 (316)
T ss_pred CcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEe
Confidence 37999999999 899999999999999999999998753220 11111 12334556669999999954
No 493
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.17 E-value=2.3 Score=43.30 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=32.5
Q ss_pred cccCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCC
Q 006758 159 RCRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 159 ~L~GktVGIIGl---G~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
.+.|+++.|.|. +.||+++|+.|...|++|++.+++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 478999999998 489999999999999999998765
No 494
>PRK07326 short chain dehydrogenase; Provisional
Probab=87.16 E-value=1 Score=44.40 Aligned_cols=36 Identities=22% Similarity=0.113 Sum_probs=32.4
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+.++++.|+|. |.||+.+++.|...|++|++.+|+.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 56899999985 9999999999999999999999875
No 495
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=87.12 E-value=1.3 Score=44.21 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=63.4
Q ss_pred EEEEEeCChhhHHHHH--HH-h--hCC-CEEEEECCCCCCCC------------cccccCceecCCHHHHhccCCEEEEc
Q 006758 164 VLGIVGRSASARALAT--RS-L--SFK-MSVLYFDVPEGKGK------------VTFPSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~--~L-k--afG-m~V~~~dr~~~~~~------------~~~~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
+|+|||.|..-...-- .+ . .+. .+|..+|.+....+ ...+..+....++++.++.||+|+++
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 5899999987655322 12 2 343 48999999875333 11122234567999999999999998
Q ss_pred cCCChh-----------hHhhcc------------------------HHHHhccCCCcEEEEcCCChhhcHHHHHHH
Q 006758 226 CAVTDE-----------TIQIIN------------------------AECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (632)
Q Consensus 226 lPlT~~-----------T~~lI~------------------------~~~L~~MK~GAvLINvgRG~iVDe~AL~~A 267 (632)
+-.... -+|++. .+.+..+.|+|+|||.+.-.-+-.+|+.+.
T Consensus 81 irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~~r~ 157 (183)
T PF02056_consen 81 IRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEALSRY 157 (183)
T ss_dssp --TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHH
T ss_pred eeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHHHHh
Confidence 754321 112222 245566779999999998776666666654
No 496
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=86.99 E-value=1.3 Score=47.45 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=53.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-cccCcee---c---CCHHHHhccCCEEEEccCCChhhH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-FPSAARR---M---DTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-~~~g~~~---~---~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
.|.+|.|+|.|.+|..+++.++..|++|++.+......... ...++.. . ..+.++....|+|+-+++....
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~-- 257 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP-- 257 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence 68899999999999999999999999988887654221100 0011110 0 1122233345777766653211
Q ss_pred hhccHHHHhccCCCcEEEEcCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgR 255 (632)
+ ...+..++++..+|.+|.
T Consensus 258 --~-~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 258 --L-EPYLSLLKLDGKLILMGV 276 (357)
T ss_pred --H-HHHHHHhccCCEEEEECC
Confidence 1 234556677777777654
No 497
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=86.99 E-value=1.1 Score=47.07 Aligned_cols=35 Identities=9% Similarity=-0.041 Sum_probs=31.7
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|.+|.|.|. |.+|..+++.++.+|++|++..++.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~ 186 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD 186 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 6889999998 9999999999999999998887654
No 498
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=86.97 E-value=1.4 Score=45.08 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=31.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~ 195 (632)
.|.+|.|.|.|.+|..+++.+++.|++ |++..+..
T Consensus 129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~ 164 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRP 164 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence 678899999999999999999999999 88877654
No 499
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=86.95 E-value=1.6 Score=47.36 Aligned_cols=67 Identities=15% Similarity=0.062 Sum_probs=47.8
Q ss_pred c-cCcEEEEEeCC-------hhhHHHHHHHhhCCCEEEEECC-CCCCCCcc-----------cccCceecCCHHHHhccC
Q 006758 160 C-RGLVLGIVGRS-------ASARALATRSLSFKMSVLYFDV-PEGKGKVT-----------FPSAARRMDTLNDLLAAS 219 (632)
Q Consensus 160 L-~GktVGIIGlG-------~IG~~vA~~LkafGm~V~~~dr-~~~~~~~~-----------~~~g~~~~~sL~eLL~~A 219 (632)
+ .|++|+|+|.| ++..+++..+..||++|.+..| ..-..... .........++++.++++
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a 245 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA 245 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 5 78999887654 6888888888999999999998 43211100 011233467899999999
Q ss_pred CEEEEcc
Q 006758 220 DVISLHC 226 (632)
Q Consensus 220 DVV~l~l 226 (632)
|||..-.
T Consensus 246 Dvvy~~~ 252 (335)
T PRK04523 246 DVVYAKS 252 (335)
T ss_pred CEEEece
Confidence 9998743
No 500
>PRK08264 short chain dehydrogenase; Validated
Probab=86.89 E-value=1.1 Score=44.26 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=34.3
Q ss_pred cccCcEEEEEe-CChhhHHHHHHHhhCCC-EEEEECCCCCC
Q 006758 159 RCRGLVLGIVG-RSASARALATRSLSFKM-SVLYFDVPEGK 197 (632)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafGm-~V~~~dr~~~~ 197 (632)
.+.++++.|+| .|.||+.+|+.|...|+ +|+.++++...
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~ 43 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES 43 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh
Confidence 46789999999 59999999999999999 99999987643
Done!