RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 006758
(632 letters)
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 98.8 bits (245), Expect = 2e-24
Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 2/183 (1%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALA 178
A+ M LLLG RR + W G +PL + LGI G + +ALA
Sbjct: 6 AEIAMLLLLGSARRAGE-GEKMIRTRSWPGW-EPLELVGEKLDNKTLGIYGFGSIGQALA 63
Query: 179 TRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238
R+ F M + YFD A D+L+ LL+ S SL+ T ET N
Sbjct: 64 KRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK 123
Query: 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298
++ + GA +VNT L+D+ V L G LA D G + ++PN
Sbjct: 124 ATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTF 183
Query: 299 ILP 301
+ P
Sbjct: 184 LFP 186
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
(Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 193
Score = 89.0 bits (219), Expect = 5e-21
Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 7/194 (3%)
Query: 116 EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCR---GMRRCRGLVLGIVGRSA 172
EE AD+ + +L L RR AL + SV+ + G R RG LGI+G
Sbjct: 1 EETADSTLCHILNLYRRATW-LHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGR 59
Query: 173 SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDET 232
+A+A R+ +F +VL++D P V +R+ TL DLL SD ++LHC + +
Sbjct: 60 VGQAVALRAKAFGFNVLFYD-PYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHN 118
Query: 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAW 290
+IN ++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD +E + +
Sbjct: 119 HHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGP 178
Query: 291 VREMPNVLILPRSA 304
+++ PN++ P +A
Sbjct: 179 LKDAPNLICTPHAA 192
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 88.1 bits (217), Expect = 9e-21
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 7/184 (3%)
Query: 118 IADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARAL 177
A+ +ALLL R+ A +L W S + G+V A+
Sbjct: 5 AAEHALALLLAASRQIPA-ADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQ-- 61
Query: 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237
R +F V+ +D + + +L+DLLA +D IS+H T ET +I+
Sbjct: 62 --RIAAFGAYVVAYDPYVSPARAAQLGI--ELLSLDDLLARADFISVHLPKTPETAGLID 117
Query: 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297
E L KPG +VN L+D+ A+ + G + LD ++ + E+ V
Sbjct: 118 KEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQV 177
Query: 298 LILP 301
++ P
Sbjct: 178 VVTP 181
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp.,
strain 101 [TaxId: 306]}
Length = 188
Score = 85.1 bits (209), Expect = 1e-19
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 118 IADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARAL 177
+A+ V+ ++L L+R + GW ++ + +G V A+
Sbjct: 3 VAEHVVMMILSLVRNYLP-SHEWARKGGW--NIADCVSHAYDLEAMHVGTVAAGRIGLAV 59
Query: 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237
R F + + Y D V T D+ DV++L+C + ET +IN
Sbjct: 60 LRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIN 119
Query: 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPN 296
E L+ K GA++VNT +L D AV + L G LAG A D P + R MP
Sbjct: 120 DETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPY 179
Query: 297 VLILP 301
+ P
Sbjct: 180 NGMTP 184
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 78.1 bits (191), Expect = 3e-17
Identities = 53/192 (27%), Positives = 79/192 (41%), Gaps = 14/192 (7%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
+A+ V+ LL LLR A L G RG LGI+G
Sbjct: 2 TRSVAELVIGELLLLLRGVPE-ANAKAHRGVG----NKLAAGSFEARGKKLGIIGYGHIG 56
Query: 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234
L + S M V ++D+ A ++ L+DLL SDV+SLH T
Sbjct: 57 TQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKN 112
Query: 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-----GAEGPQWMEA 289
++ A+ + +KPG+ L+N ++D A+ L LAG A+D A +
Sbjct: 113 MMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTS 172
Query: 290 WVREMPNVLILP 301
+ E NVL+ P
Sbjct: 173 PLAEFDNVLLTP 184
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
{Lactobacillus casei [TaxId: 1582]}
Length = 199
Score = 58.7 bits (140), Expect = 2e-10
Identities = 45/205 (21%), Positives = 71/205 (34%), Gaps = 26/205 (12%)
Query: 118 IADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARAL 177
IA+ + L LLR + L A + + + + + + +
Sbjct: 5 IAEFALTDTLYLLRNMG-KVQAQLQAGDYEKAGTFIGKELGQQT-------VGVMGTGHI 56
Query: 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237
++ + + +L DL SDVI LH ++ IIN
Sbjct: 57 GQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIIN 116
Query: 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD----------------GA 281
+KPGA ++NT L+D A+ L G LAG +D
Sbjct: 117 EAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSF 176
Query: 282 EGPQWMEAWVREMPNVLILPRSADY 306
+ P W E MPNV++ P A Y
Sbjct: 177 KDPLWDELL--GMPNVVLSPHIAYY 199
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 53.2 bits (126), Expect = 8e-09
Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 14/189 (7%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
A+ +A+ +ALLL +R + + V + +G + ++G
Sbjct: 1 ADAVAEFALALLLAPYKRIIQYGE-KMKRGDYGRDV-----EIPLIQGEKVAVLGLGEIG 54
Query: 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234
+ + V F +G R ++L + L + + T
Sbjct: 55 TRVGKILAALGAQVRGFSRTPKEGPW------RFTNSLEEALREARAAVCALPLNKHTRG 108
Query: 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAWVR 292
++ + L + A VN G +++LD V ++L + A D +A
Sbjct: 109 LVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFF 168
Query: 293 EMPNVLILP 301
+PNV+ P
Sbjct: 169 SLPNVVATP 177
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 197
Score = 50.6 bits (119), Expect = 1e-07
Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 24/202 (11%)
Query: 118 IADTVMALLLGLLRRTHLLARHALSASG-WLGSVQPLCRGMRRCRGLVLGIVGRSASARA 176
IA+ +LR+ + W ++ R R V+G+VG +
Sbjct: 4 IAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIG------REVRDQVVGVVGTGHIGQV 57
Query: 177 LATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236
F V+ +D+ +D+L+DL +DVISLH + +I
Sbjct: 58 FMQIMEGFGAKVITYDIFR---NPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMI 114
Query: 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--------------GAE 282
N E + +K +VN L+D AV + L G + G A+D G E
Sbjct: 115 NDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKE 174
Query: 283 GPQWMEAWVREMPNVLILPRSA 304
P A + PNVL+ P++A
Sbjct: 175 FPDARLADLIARPNVLVTPKTA 196
>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor
CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 133
Score = 44.6 bits (105), Expect = 4e-06
Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Query: 19 LPSVVALNCIEDCVLEQD---SLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAA 75
+P V L+ DC +E +A VA + + + + A L++ L R
Sbjct: 1 MPLVALLDGR-DCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTRED 59
Query: 76 QRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134
+ + ++I+ +GS +D A DLG+ + +V + + + R
Sbjct: 60 LEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVY-SEQASIEMREEAAREIR 117
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 130
Score = 35.1 bits (80), Expect = 0.006
Identities = 14/84 (16%), Positives = 27/84 (32%)
Query: 56 KIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRA 115
+ A A+L+ S + +++ G VD A G+ +++ TS +
Sbjct: 39 AVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSAS 98
Query: 116 EEIADTVMALLLGLLRRTHLLARH 139
A + R L
Sbjct: 99 TAEAQDRAGTDVAESVRLALAGEF 122
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 33.8 bits (77), Expect = 0.027
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 5/102 (4%)
Query: 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDV 221
G V + G + A F V+ ++ A + +
Sbjct: 24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPIN-----ALQAAMEGYEVTTMDEACQ 78
Query: 222 ISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCA 263
T I II + +K A + N G + D
Sbjct: 79 EGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVK 120
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 129
Score = 30.0 bits (67), Expect = 0.36
Identities = 7/51 (13%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 95 VDSALAADLGLRLIHVDTSRAE---EIADTVMALLLGLLRRTHLLARHALS 142
+D G+++ + + ++A L+ L + +AL+
Sbjct: 81 IDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALFGGADM--SYALA 129
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 31.2 bits (70), Expect = 0.41
Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 174 ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233
K + + + + + + + +L+ DVI ++ + DE +
Sbjct: 256 TILQYEE---LKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDL 312
Query: 234 QIINAECLQHIKPGAFLV 251
+ LQ K G ++
Sbjct: 313 NKKVEKILQTAKVGCKII 330
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate
dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Length = 131
Score = 27.7 bits (61), Expect = 1.9
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 104 GLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134
G+RL +V + + V L L+
Sbjct: 91 GIRLSNVPAYTETAVHNMVYFSLQHLVDFLT 121
>d1zd0a1 d.329.1.1 (A:9-144) Hypothetical protein PF0523 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 136
Score = 26.7 bits (59), Expect = 5.1
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 229 TDETIQIINAECLQHIKPGAFL 250
Q++NAEC + +
Sbjct: 29 FKGDYQVVNAECADKVIFATII 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.385
Gapped
Lambda K H
0.267 0.0423 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,266,668
Number of extensions: 103358
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 17
Length of query: 632
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 541
Effective length of database: 1,158,166
Effective search space: 626567806
Effective search space used: 626567806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.1 bits)