Query 006760
Match_columns 632
No_of_seqs 169 out of 275
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 14:05:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 3.6E-91 7.7E-96 698.7 21.3 225 139-365 1-229 (229)
2 smart00234 START in StAR and p 99.7 1.7E-16 3.6E-21 154.7 18.7 199 145-366 2-206 (206)
3 PF01852 START: START domain; 99.7 4.4E-17 9.5E-22 158.3 13.3 199 144-365 1-205 (206)
4 cd00177 START Lipid-binding ST 99.3 9.7E-11 2.1E-15 111.1 16.3 187 148-363 2-191 (193)
5 cd08871 START_STARD10-like Lip 99.2 1.3E-09 2.8E-14 109.1 18.7 199 147-378 9-214 (222)
6 cd08868 START_STARD1_3_like Ch 99.1 5.1E-09 1.1E-13 103.8 16.2 193 142-367 6-208 (208)
7 cd08867 START_STARD4_5_6-like 99.0 1.4E-08 3.1E-13 100.5 17.7 191 143-364 4-205 (206)
8 cd08904 START_STARD6-like Lipi 98.9 5.8E-08 1.3E-12 97.3 15.2 170 143-335 4-179 (204)
9 cd08903 START_STARD5-like Lipi 98.7 4.7E-07 1E-11 90.5 16.8 189 143-364 4-205 (208)
10 cd08869 START_RhoGAP C-termina 98.7 2.5E-07 5.3E-12 91.7 14.5 164 147-335 4-171 (197)
11 cd08905 START_STARD1-like Chol 98.6 4.8E-07 1E-11 90.5 14.1 192 141-365 5-207 (209)
12 cd08909 START_STARD13-like C-t 98.6 1.3E-06 2.8E-11 87.8 14.3 128 195-335 48-179 (205)
13 PLN00188 enhanced disease resi 98.5 1.3E-06 2.7E-11 100.5 14.2 125 199-335 227-364 (719)
14 cd08906 START_STARD3-like Chol 98.3 1.6E-05 3.4E-10 79.9 15.9 192 141-364 5-206 (209)
15 cd08910 START_STARD2-like Lipi 98.2 1.8E-05 4E-10 79.2 13.6 182 155-366 18-206 (207)
16 cd08902 START_STARD4-like Lipi 98.1 4.4E-05 9.6E-10 76.6 13.7 167 143-334 4-176 (202)
17 cd08870 START_STARD2_7-like Li 98.1 0.00014 3E-09 72.6 16.5 190 150-366 8-208 (209)
18 cd08908 START_STARD12-like C-t 98.0 5.8E-05 1.3E-09 76.0 12.9 164 146-335 11-178 (204)
19 cd08877 START_2 Uncharacterize 98.0 0.00018 4E-09 71.8 16.2 195 143-365 4-213 (215)
20 cd08876 START_1 Uncharacterize 98.0 0.00022 4.8E-09 69.4 14.7 151 199-364 41-194 (195)
21 cd08874 START_STARD9-like C-te 97.9 0.00015 3.3E-09 72.9 12.2 121 194-332 45-176 (205)
22 cd08911 START_STARD7-like Lipi 97.7 0.00057 1.2E-08 68.4 13.9 151 199-366 45-206 (207)
23 cd08907 START_STARD8-like C-te 97.7 0.00018 4E-09 72.4 10.3 164 146-335 11-179 (205)
24 cd08872 START_STARD11-like Cer 97.7 0.0012 2.5E-08 67.8 16.0 190 147-365 9-225 (235)
25 cd08873 START_STARD14_15-like 97.2 0.0038 8.2E-08 64.4 12.2 142 161-330 54-203 (235)
26 cd08913 START_STARD14-like Lip 96.7 0.027 5.8E-07 58.3 13.0 126 202-341 84-216 (240)
27 cd08871 START_STARD10-like Lip 96.6 0.1 2.3E-06 52.4 16.4 173 412-628 21-201 (222)
28 cd08914 START_STARD15-like Lip 96.6 0.02 4.3E-07 59.2 11.3 118 200-331 79-205 (236)
29 cd08874 START_STARD9-like C-te 96.1 0.042 9.1E-07 55.5 10.3 59 411-477 19-77 (205)
30 cd08869 START_RhoGAP C-termina 96.0 0.31 6.8E-06 48.5 15.7 172 412-629 17-196 (197)
31 cd08904 START_STARD6-like Lipi 95.8 0.38 8.2E-06 48.7 15.8 172 413-627 21-203 (204)
32 PF06005 DUF904: Protein of un 95.3 0.046 1E-06 46.8 5.9 47 9-76 19-69 (72)
33 cd00177 START Lipid-binding ST 95.2 0.57 1.2E-05 44.4 13.8 145 414-597 15-165 (193)
34 cd08907 START_STARD8-like C-te 94.8 1.5 3.2E-05 44.8 16.1 170 411-628 24-203 (205)
35 cd08877 START_2 Uncharacterize 94.5 2.3 5.1E-05 42.5 16.8 115 400-529 10-129 (215)
36 cd08868 START_STARD1_3_like Ch 94.4 2.2 4.7E-05 42.5 16.2 174 413-628 23-206 (208)
37 TIGR00219 mreC rod shape-deter 94.2 0.054 1.2E-06 57.3 4.5 40 11-67 69-108 (283)
38 cd08867 START_STARD4_5_6-like 93.5 7.2 0.00016 38.8 17.9 144 393-560 7-160 (206)
39 cd08903 START_STARD5-like Lipi 93.4 3.3 7.2E-05 41.6 15.6 175 412-628 20-206 (208)
40 cd08906 START_STARD3-like Chol 93.4 5.6 0.00012 40.2 17.1 145 395-559 8-160 (209)
41 smart00234 START in StAR and p 93.3 1.3 2.7E-05 43.4 12.2 132 413-560 18-157 (206)
42 PF07407 Seadorna_VP6: Seadorn 93.0 0.15 3.3E-06 54.7 5.4 24 8-31 32-55 (420)
43 cd08876 START_1 Uncharacterize 92.9 2.5 5.3E-05 41.2 13.4 60 411-477 14-73 (195)
44 cd08911 START_STARD7-like Lipi 91.7 6.1 0.00013 39.7 14.8 59 412-477 19-78 (207)
45 PRK13922 rod shape-determining 91.3 0.28 6.2E-06 51.0 5.1 40 10-67 71-110 (276)
46 cd08870 START_STARD2_7-like Li 90.6 2.7 5.9E-05 42.1 11.1 107 413-529 21-133 (209)
47 cd08902 START_STARD4-like Lipi 90.2 11 0.00024 38.5 15.0 59 412-478 21-80 (202)
48 PRK15422 septal ring assembly 90.2 0.4 8.7E-06 41.8 4.1 61 2-76 12-76 (79)
49 cd08860 TcmN_ARO-CYC_like N-te 90.2 7.3 0.00016 37.0 13.1 139 203-366 5-144 (146)
50 cd08875 START_ArGLABRA2_like C 89.8 7 0.00015 40.6 13.4 182 393-604 4-204 (229)
51 cd08908 START_STARD12-like C-t 89.4 8.7 0.00019 39.1 13.6 168 415-628 28-202 (204)
52 cd08873 START_STARD14_15-like 89.2 3.5 7.5E-05 42.9 10.7 66 412-488 53-118 (235)
53 cd07813 COQ10p_like Coenzyme Q 89.1 5 0.00011 36.5 10.7 135 203-366 3-137 (138)
54 cd08909 START_STARD13-like C-t 88.4 14 0.0003 37.7 14.3 170 414-628 27-203 (205)
55 cd05018 CoxG Carbon monoxide d 88.3 8.3 0.00018 34.6 11.5 133 204-363 6-138 (144)
56 cd07819 SRPBCC_2 Ligand-bindin 87.0 13 0.00028 33.2 12.0 107 203-333 6-114 (140)
57 PF01852 START: START domain; 86.7 11 0.00024 36.7 12.1 148 396-560 2-157 (206)
58 cd08864 SRPBCC_DUF3074 DUF3074 86.4 6.3 0.00014 40.1 10.5 87 250-338 88-183 (208)
59 KOG2761 START domain-containin 85.6 6.3 0.00014 40.7 10.0 139 208-365 63-213 (219)
60 PRK14872 rod shape-determining 85.6 0.72 1.6E-05 50.2 3.5 38 12-67 61-98 (337)
61 cd08861 OtcD1_ARO-CYC_like N-t 85.4 8.5 0.00018 34.9 10.0 137 204-365 4-141 (142)
62 cd08866 SRPBCC_11 Ligand-bindi 84.5 19 0.00041 32.7 11.9 132 203-365 3-143 (144)
63 cd07817 SRPBCC_8 Ligand-bindin 84.4 28 0.0006 31.1 12.8 134 204-365 5-138 (139)
64 cd08914 START_STARD15-like Lip 84.4 1.2 2.6E-05 46.2 4.4 58 411-477 53-110 (236)
65 cd08910 START_STARD2-like Lipi 82.6 1.6 3.6E-05 43.8 4.4 60 411-477 22-82 (207)
66 PF12711 Kinesin-relat_1: Kine 80.8 3.8 8.2E-05 36.5 5.4 47 12-73 21-67 (86)
67 COG1792 MreC Cell shape-determ 80.4 2.4 5.1E-05 45.1 4.8 43 7-67 65-107 (284)
68 PRK10724 hypothetical protein; 80.3 45 0.00098 32.3 13.3 137 202-367 18-154 (158)
69 cd08913 START_STARD14-like Lip 79.0 2.5 5.5E-05 43.9 4.4 58 411-477 56-113 (240)
70 TIGR03752 conj_TIGR03752 integ 78.9 1.9 4.1E-05 48.8 3.7 25 51-75 110-134 (472)
71 cd08872 START_STARD11-like Cer 78.4 50 0.0011 34.1 13.6 63 409-477 21-85 (235)
72 cd07818 SRPBCC_1 Ligand-bindin 78.2 25 0.00054 32.2 10.4 29 203-231 6-34 (150)
73 cd08865 SRPBCC_10 Ligand-bindi 78.0 48 0.001 29.1 12.4 136 204-365 4-139 (140)
74 PF07407 Seadorna_VP6: Seadorn 76.2 2.3 4.9E-05 46.1 3.2 27 6-32 37-63 (420)
75 COG4026 Uncharacterized protei 75.8 4.5 9.8E-05 41.9 5.0 48 4-72 145-192 (290)
76 COG3074 Uncharacterized protei 74.4 6.7 0.00015 33.8 4.9 60 3-76 13-76 (79)
77 cd07821 PYR_PYL_RCAR_like Pyra 70.9 74 0.0016 28.0 11.9 133 205-364 7-139 (140)
78 PRK09413 IS2 repressor TnpA; R 70.7 6.4 0.00014 36.3 4.4 28 5-32 75-102 (121)
79 TIGR00219 mreC rod shape-deter 70.6 4.2 9.1E-05 43.2 3.6 16 5-20 70-85 (283)
80 PF02183 HALZ: Homeobox associ 70.5 6.2 0.00013 31.0 3.6 24 8-31 19-42 (45)
81 cd08905 START_STARD1-like Chol 69.6 1.3E+02 0.0028 30.3 15.9 194 392-628 5-207 (209)
82 PLN00188 enhanced disease resi 69.5 19 0.0004 43.1 8.7 116 453-597 235-361 (719)
83 PF06005 DUF904: Protein of un 69.4 3.8 8.2E-05 35.2 2.4 24 6-29 30-53 (72)
84 cd07822 SRPBCC_4 Ligand-bindin 67.9 48 0.001 29.3 9.4 50 312-365 92-141 (141)
85 PF10604 Polyketide_cyc2: Poly 65.0 99 0.0021 27.2 14.9 35 204-242 7-41 (139)
86 PF14197 Cep57_CLD_2: Centroso 63.6 2.7 5.8E-05 35.8 0.4 19 50-68 47-65 (69)
87 PF14775 NYD-SP28_assoc: Sperm 62.1 10 0.00022 31.5 3.5 25 9-33 34-58 (60)
88 TIGR02449 conserved hypothetic 61.9 11 0.00023 32.0 3.7 23 7-29 20-42 (65)
89 PF12808 Mto2_bdg: Micro-tubul 60.2 8.2 0.00018 31.4 2.5 19 51-69 30-48 (52)
90 PRK06266 transcription initiat 56.9 10 0.00022 37.8 3.2 14 34-47 137-150 (178)
91 cd07812 SRPBCC START/RHO_alpha 55.7 86 0.0019 26.4 8.5 29 204-232 4-32 (141)
92 TIGR02894 DNA_bind_RsfA transc 55.1 30 0.00066 34.2 6.0 48 6-74 102-149 (161)
93 PF07334 IFP_35_N: Interferon- 53.4 11 0.00024 32.9 2.4 22 53-74 3-24 (76)
94 smart00340 HALZ homeobox assoc 52.6 11 0.00023 29.6 2.0 19 54-72 16-34 (44)
95 PRK14872 rod shape-determining 52.2 15 0.00032 40.3 3.7 28 4-31 60-87 (337)
96 PRK10884 SH3 domain-containing 51.6 27 0.00058 35.7 5.2 18 55-72 137-154 (206)
97 PRK13922 rod shape-determining 50.1 17 0.00037 37.9 3.7 39 15-74 69-110 (276)
98 KOG3119 Basic region leucine z 49.5 11 0.00025 39.7 2.3 60 8-74 187-246 (269)
99 PF10224 DUF2205: Predicted co 49.2 15 0.00033 32.3 2.7 22 13-34 42-63 (80)
100 PF02183 HALZ: Homeobox associ 48.5 26 0.00057 27.5 3.6 22 4-26 2-23 (45)
101 PRK00888 ftsB cell division pr 47.7 21 0.00047 32.6 3.5 15 55-69 46-60 (105)
102 KOG4196 bZIP transcription fac 47.6 22 0.00048 34.1 3.6 20 52-71 90-109 (135)
103 cd07823 SRPBCC_5 Ligand-bindin 46.8 2.4E+02 0.0051 26.0 11.6 31 203-233 3-33 (146)
104 KOG3119 Basic region leucine z 46.4 34 0.00074 36.2 5.3 60 5-78 198-257 (269)
105 PF06156 DUF972: Protein of un 46.2 30 0.00065 31.9 4.2 45 13-71 13-57 (107)
106 PRK13169 DNA replication intia 45.6 31 0.00066 32.2 4.2 21 50-70 36-56 (110)
107 PF06906 DUF1272: Protein of u 45.1 13 0.00027 30.9 1.4 16 29-44 37-52 (57)
108 KOG3156 Uncharacterized membra 44.6 24 0.00053 36.4 3.6 29 5-33 113-141 (220)
109 cd08865 SRPBCC_10 Ligand-bindi 44.1 12 0.00027 33.0 1.4 28 448-475 2-29 (140)
110 PF14197 Cep57_CLD_2: Centroso 43.2 25 0.00054 30.0 3.0 20 8-27 47-66 (69)
111 PF10604 Polyketide_cyc2: Poly 43.1 19 0.00041 31.9 2.4 28 448-475 5-32 (139)
112 cd07823 SRPBCC_5 Ligand-bindin 43.0 8.5 0.00019 35.7 0.2 26 449-474 3-28 (146)
113 PHA03162 hypothetical protein; 43.0 74 0.0016 30.6 6.3 24 12-35 17-40 (135)
114 PF03364 Polyketide_cyc: Polyk 43.0 2.4E+02 0.0052 25.0 11.3 103 209-335 3-107 (130)
115 cd07819 SRPBCC_2 Ligand-bindin 42.9 15 0.00032 32.8 1.7 30 447-476 4-33 (140)
116 PF04880 NUDE_C: NUDE protein, 42.7 11 0.00024 37.4 0.9 19 51-69 25-43 (166)
117 PTZ00454 26S protease regulato 41.0 40 0.00087 37.6 5.1 19 53-71 46-64 (398)
118 KOG0971 Microtubule-associated 40.9 54 0.0012 40.3 6.2 55 13-73 337-391 (1243)
119 COG4467 Regulator of replicati 40.4 18 0.0004 33.6 1.9 21 13-33 34-54 (114)
120 PF12808 Mto2_bdg: Micro-tubul 39.9 24 0.00051 28.8 2.2 31 2-32 14-46 (52)
121 KOG4196 bZIP transcription fac 39.7 72 0.0016 30.7 5.7 16 54-69 78-93 (135)
122 smart00338 BRLZ basic region l 39.4 56 0.0012 26.8 4.5 16 14-29 32-47 (65)
123 cd07821 PYR_PYL_RCAR_like Pyra 39.4 19 0.00041 31.8 1.9 27 448-474 4-30 (140)
124 PF15058 Speriolin_N: Sperioli 39.3 43 0.00093 34.1 4.4 19 13-31 10-28 (200)
125 PF14645 Chibby: Chibby family 38.9 30 0.00066 32.3 3.1 22 7-28 70-91 (116)
126 PF15058 Speriolin_N: Sperioli 38.2 33 0.00071 35.0 3.4 27 7-33 11-43 (200)
127 PF08961 DUF1875: Domain of un 38.2 11 0.00023 39.1 0.0 38 9-67 130-172 (243)
128 PF07989 Microtub_assoc: Micro 38.1 60 0.0013 28.1 4.6 56 12-73 11-66 (75)
129 PF06156 DUF972: Protein of un 37.6 41 0.00088 31.1 3.7 25 9-33 30-54 (107)
130 KOG0288 WD40 repeat protein Ti 37.3 50 0.0011 37.2 4.9 52 11-77 30-81 (459)
131 cd07825 SRPBCC_7 Ligand-bindin 37.2 22 0.00048 32.2 2.0 26 449-474 4-29 (144)
132 cd07817 SRPBCC_8 Ligand-bindin 37.0 19 0.00041 32.1 1.5 28 448-475 3-30 (139)
133 cd08862 SRPBCC_Smu440-like Lig 36.9 21 0.00046 31.8 1.7 30 446-475 2-31 (138)
134 PF07106 TBPIP: Tat binding pr 36.7 45 0.00098 32.4 4.1 57 8-76 79-135 (169)
135 cd08866 SRPBCC_11 Ligand-bindi 36.4 18 0.00039 32.8 1.2 29 448-476 2-30 (144)
136 PF08961 DUF1875: Domain of un 36.2 12 0.00026 38.8 0.0 18 52-69 145-162 (243)
137 cd08901 SRPBCC_CalC_Aha1-like_ 35.6 19 0.00041 33.2 1.2 27 447-473 2-28 (136)
138 cd05018 CoxG Carbon monoxide d 35.4 14 0.00031 33.1 0.4 27 449-475 5-31 (144)
139 TIGR03752 conj_TIGR03752 integ 35.4 32 0.00069 39.4 3.1 58 8-71 80-137 (472)
140 cd07818 SRPBCC_1 Ligand-bindin 34.9 66 0.0014 29.4 4.7 32 447-478 4-35 (150)
141 smart00338 BRLZ basic region l 34.3 45 0.00098 27.4 3.1 28 4-31 36-63 (65)
142 cd07824 SRPBCC_6 Ligand-bindin 34.3 3.7E+02 0.0081 24.7 12.1 117 206-345 8-127 (146)
143 cd07812 SRPBCC START/RHO_alpha 34.0 22 0.00047 30.1 1.3 27 449-475 3-29 (141)
144 TIGR02449 conserved hypothetic 33.8 98 0.0021 26.4 5.1 35 13-68 12-46 (65)
145 KOG3156 Uncharacterized membra 33.3 77 0.0017 32.9 5.2 52 2-74 89-140 (220)
146 KOG4005 Transcription factor X 32.5 36 0.00079 35.7 2.8 20 8-27 104-123 (292)
147 cd07814 SRPBCC_CalC_Aha1-like 32.0 21 0.00046 31.7 0.9 27 448-474 3-29 (139)
148 KOG4343 bZIP transcription fac 31.9 37 0.00081 39.3 3.0 20 12-31 313-332 (655)
149 PF15035 Rootletin: Ciliary ro 31.5 85 0.0018 31.5 5.1 23 9-31 82-104 (182)
150 COG1675 TFA1 Transcription ini 30.6 34 0.00074 34.3 2.2 34 35-68 134-167 (176)
151 PRK15422 septal ring assembly 30.6 52 0.0011 29.1 3.0 27 7-33 45-71 (79)
152 KOG2761 START domain-containin 30.4 17 0.00037 37.6 0.1 61 410-477 25-86 (219)
153 PF07558 Shugoshin_N: Shugoshi 29.5 54 0.0012 25.8 2.7 18 7-24 27-44 (46)
154 PF04999 FtsL: Cell division p 29.3 1.3E+02 0.0029 26.4 5.5 25 54-78 53-83 (97)
155 PF05494 Tol_Tol_Ttg2: Toluene 29.1 1.7E+02 0.0037 28.2 6.7 56 236-296 85-140 (170)
156 PF04977 DivIC: Septum formati 29.0 70 0.0015 26.5 3.5 16 54-69 35-50 (80)
157 PF10883 DUF2681: Protein of u 28.8 59 0.0013 29.2 3.1 11 57-67 53-63 (87)
158 PHA02562 46 endonuclease subun 28.6 1.5E+02 0.0032 33.8 7.1 37 33-71 284-320 (562)
159 cd07822 SRPBCC_4 Ligand-bindin 28.3 39 0.00085 29.8 2.0 26 449-474 4-29 (141)
160 smart00224 GGL G protein gamma 27.5 30 0.00065 28.8 1.0 16 53-68 2-17 (63)
161 PHA03162 hypothetical protein; 27.2 30 0.00065 33.2 1.1 25 44-68 14-38 (135)
162 PF00170 bZIP_1: bZIP transcri 27.2 1.3E+02 0.0029 24.5 4.8 7 18-24 36-42 (64)
163 PRK00888 ftsB cell division pr 26.8 49 0.0011 30.3 2.3 25 7-31 33-57 (105)
164 COG3074 Uncharacterized protei 26.7 80 0.0017 27.4 3.4 28 6-33 44-71 (79)
165 PF07246 Phlebovirus_NSM: Phle 26.4 90 0.0019 33.3 4.4 24 49-72 208-231 (264)
166 PF10226 DUF2216: Uncharacteri 26.3 57 0.0012 33.2 2.9 24 8-31 55-78 (195)
167 PF10482 CtIP_N: Tumour-suppre 26.1 34 0.00074 32.2 1.2 32 10-41 44-75 (120)
168 PF05812 Herpes_BLRF2: Herpesv 26.0 69 0.0015 30.3 3.2 25 12-36 7-31 (118)
169 PF08172 CASP_C: CASP C termin 25.9 70 0.0015 33.6 3.6 21 51-71 115-135 (248)
170 COG1792 MreC Cell shape-determ 25.9 1.1E+02 0.0023 32.8 5.0 43 15-75 66-108 (284)
171 PF12711 Kinesin-relat_1: Kine 25.7 89 0.0019 28.0 3.6 15 7-21 23-37 (86)
172 cd07820 SRPBCC_3 Ligand-bindin 25.7 36 0.00078 31.2 1.3 26 449-474 3-28 (137)
173 COG5570 Uncharacterized small 25.6 1.1E+02 0.0024 25.2 3.8 36 25-71 19-54 (57)
174 PHA03155 hypothetical protein; 25.2 73 0.0016 30.0 3.1 24 12-35 12-35 (115)
175 PF06305 DUF1049: Protein of u 25.2 52 0.0011 26.9 2.0 23 6-28 46-68 (68)
176 PF07151 DUF1391: Protein of u 25.1 33 0.00072 27.1 0.8 8 351-358 38-45 (49)
177 PF05864 Chordopox_RPO7: Chord 24.4 66 0.0014 26.9 2.4 34 34-72 5-38 (63)
178 COG5481 Uncharacterized conser 24.3 1.3E+02 0.0027 25.5 4.0 53 11-71 7-59 (67)
179 PF10883 DUF2681: Protein of u 24.2 71 0.0015 28.7 2.8 32 2-33 24-55 (87)
180 PRK13169 DNA replication intia 24.2 95 0.0021 28.9 3.7 24 11-34 32-55 (110)
181 cd08898 SRPBCC_CalC_Aha1-like_ 23.8 48 0.001 29.9 1.7 28 448-475 4-31 (145)
182 PF14389 Lzipper-MIP1: Leucine 23.6 3.1E+02 0.0067 24.3 6.7 67 6-72 6-76 (88)
183 PHA03155 hypothetical protein; 23.4 32 0.00069 32.3 0.5 23 46-68 11-33 (115)
184 TIGR02209 ftsL_broad cell divi 22.8 89 0.0019 26.6 3.1 24 55-78 43-72 (85)
185 cd07824 SRPBCC_6 Ligand-bindin 22.8 46 0.00099 30.8 1.4 27 449-475 5-31 (146)
186 PF07989 Microtub_assoc: Micro 22.6 1.1E+02 0.0024 26.5 3.6 26 7-32 42-67 (75)
187 PF11454 DUF3016: Protein of u 22.5 1.1E+02 0.0023 29.8 3.9 44 319-370 2-45 (141)
188 PRK03918 chromosome segregatio 21.9 1.9E+02 0.0042 34.9 6.7 13 33-45 435-447 (880)
189 PF05812 Herpes_BLRF2: Herpesv 21.8 44 0.00095 31.6 1.0 22 47-68 7-28 (118)
190 TIGR02894 DNA_bind_RsfA transc 21.7 1.1E+02 0.0023 30.5 3.7 39 11-70 100-138 (161)
191 cd08893 SRPBCC_CalC_Aha1-like_ 21.3 47 0.001 29.5 1.1 25 450-474 5-29 (136)
192 TIGR02209 ftsL_broad cell divi 21.2 2.3E+02 0.0051 24.0 5.4 27 7-33 30-56 (85)
193 PF00170 bZIP_1: bZIP transcri 21.1 1.4E+02 0.0029 24.5 3.7 18 12-29 37-54 (64)
194 PF06677 Auto_anti-p27: Sjogre 21.0 85 0.0019 24.3 2.3 23 22-44 6-28 (41)
195 PF07412 Geminin: Geminin; In 21.0 2E+02 0.0043 29.6 5.6 39 15-74 125-163 (200)
196 cd00068 GGL G protein gamma su 20.7 49 0.0011 27.0 1.0 16 53-68 2-17 (57)
197 COG2919 Septum formation initi 20.3 1E+02 0.0022 28.6 3.1 20 12-31 61-80 (117)
198 PF09297 zf-NADH-PPase: NADH p 20.2 35 0.00076 24.5 0.0 14 32-45 2-15 (32)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=3.6e-91 Score=698.75 Aligned_cols=225 Identities=58% Similarity=0.997 Sum_probs=218.7
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHHh
Q 006760 139 KSLMTDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMF 218 (632)
Q Consensus 139 k~~~~~lA~~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~l 218 (632)
|+++++||++||+||++||++++|||++++++++|+||+|||.++||+..+ .++.||++|||||||+|+||+.+|||+|
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~~-~~~~~~~~eASR~~glV~m~~~~lVe~l 79 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGG-SKPGGFTTEASRACGLVMMNAIKLVEIL 79 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcCC-CCCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence 688999999999999999999999999999888999999999999999988 8899999999999999999999999999
Q ss_pred CCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecCCeEEEEEEecCCCC-
Q 006760 219 MDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSPQ- 297 (632)
Q Consensus 219 mD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~G~WaVvDvSld~~~- 297 (632)
||++||.+|||+||++|+|++||++|.+|+|||+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+
T Consensus 80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~ 159 (229)
T cd08875 80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT 159 (229)
T ss_pred hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred ---CCCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHHH
Q 006760 298 ---FSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCE 365 (632)
Q Consensus 298 ---~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~ce 365 (632)
...++||||+|||||||||+|||||||||||+|||++. +|.+||++++||+||||+||+++||||||
T Consensus 160 ~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~-~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKP-VHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCc-ccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 23578999999999999999999999999999999997 99999999999999999999999999997
No 2
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.73 E-value=1.7e-16 Score=154.71 Aligned_cols=199 Identities=35% Similarity=0.546 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHhccCCCCceeecCC--CCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhh-HHHHhCCc
Q 006760 145 IAANAMEELLRLLQTNEPLWMKSST--DGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLA-LVDMFMDC 221 (632)
Q Consensus 145 lA~~Am~El~~la~~~eplWi~~~~--~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~-LVe~lmD~ 221 (632)
-|++++.|+++++...+..|....+ .+.. .|.+ + . +.+....+-|..++|...+.+ +.++|.|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-----~~~~-~---~----~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~ 68 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENGDE-----VRSI-L---S----PGRSPGEASRAVGVVPMVCADLVEELMDDL 68 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCcce-----EEEE-c---c----CCCCceEEEEEEEEEecChHHHHHHHHhcc
Confidence 3778899999999999999998764 2222 3322 1 1 123557899999999999997 55667665
Q ss_pred hhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecCCeEEEEEEecCCCCC---
Q 006760 222 SKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSPQF--- 298 (632)
Q Consensus 222 ~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~G~WaVvDvSld~~~~--- 298 (632)
+ +...+-..+.+++.++.++. +..+......+.. +|+ +.|||.++|++++.++|.|+|+..|++....
T Consensus 69 ~-~r~~Wd~~~~~~~~ie~~~~------~~~i~~~~~~~~~-~p~-~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~ 139 (206)
T smart00234 69 R-YRPEWDKNVAKAETLEVIDN------GTVIYHYVSKFVA-GPV-SPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPT 139 (206)
T ss_pred c-chhhCchhcccEEEEEEECC------CCeEEEEEEeccc-CcC-CCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCC
Confidence 2 22233334456777776653 2233333333333 365 5599999999999999999999999986532
Q ss_pred CCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHHHH
Q 006760 299 SSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCER 366 (632)
Q Consensus 299 ~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~cer 366 (632)
...+|+..++||++|+++++|.|+|||+.|++..-+. .+.+.+.++.++....+++|.+.|+++|++
T Consensus 140 ~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~i-P~~lvn~~~~~~~~~~~~~~~~~~~~~~~~ 206 (206)
T smart00234 140 SGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWL-PHWLVRSLIKSGLAEFAKTWVATLQKHCAK 206 (206)
T ss_pred CCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCc-cceeehhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 2469999999999999999999999999999999998 889999999999999999999999999973
No 3
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.72 E-value=4.4e-17 Score=158.27 Aligned_cols=199 Identities=23% Similarity=0.338 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHhccCCCCceeecCC-CCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHHhCCch
Q 006760 144 DIAANAMEELLRLLQTNEPLWMKSST-DGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMDCS 222 (632)
Q Consensus 144 ~lA~~Am~El~~la~~~eplWi~~~~-~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~lmD~~ 222 (632)
|+|++++.+++++++.++.-|....+ .+.. .|.+..+. + .+..+..-|..++|...+.++++.|+|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~~~--~----~~~~~~~~k~~~~v~~~~~~~~~~~~~~~ 69 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNGD-----VYYKKVSP--S----DSCPIKMFKAEGVVPASPEQVVEDLLDDR 69 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTTC-----EEEEEEEC--S----SSTSCEEEEEEEEESSCHHHHHHHHHCGG
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCCe-----EEEEEeCc--c----ccccceEEEEEEEEcCChHHHHHHHHhhH
Confidence 58999999999999999999988751 1112 23232211 1 12466788999999999999999999988
Q ss_pred -hhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecCCeEEEEEEecCCCCC---
Q 006760 223 -KWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSPQF--- 298 (632)
Q Consensus 223 -~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~G~WaVvDvSld~~~~--- 298 (632)
+|-.++- +++.++.++. +..|..++.++..++|+.| |||.++|++++.++|.++|+..|++....
T Consensus 70 ~~Wd~~~~----~~~~le~~~~------~~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~ 138 (206)
T PF01852_consen 70 EQWDKMCV----EAEVLEQIDE------DTDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN 138 (206)
T ss_dssp GHHSTTEE----EEEEEEEEET------TEEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT
T ss_pred hhcccchh----hheeeeecCC------CCeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeecccccccc
Confidence 8988433 5566666553 3678888889999999999 99999999999999999999999986532
Q ss_pred -CCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHHH
Q 006760 299 -SSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCE 365 (632)
Q Consensus 299 -~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~ce 365 (632)
...+|+..++||++|++.++|.|+||+|-|++..-+. ..-+++.++.+...--++.+.+.|++|++
T Consensus 139 ~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~i-P~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 139 SKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWI-PSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp -TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred ccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCC-hHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 2469999999999999999999999999999999998 78999999999988878888888888765
No 4
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.29 E-value=9.7e-11 Score=111.10 Aligned_cols=187 Identities=21% Similarity=0.307 Sum_probs=134.6
Q ss_pred HHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHHhCCchhhhhh
Q 006760 148 NAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMDCSKWVEL 227 (632)
Q Consensus 148 ~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~lmD~~~W~~~ 227 (632)
+|..+++.+.+.+ .-|-...+.+ +..-|.+.. . +.....-|..+.|..++.++.+.|+|.+.....
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~~----~v~vy~~~~----~-----~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w 67 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEKD----GVKIYTKPY----E-----DSGLKLLKAEGVIPASPEQVFELLMDIDLRKKW 67 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEECC----cEEEEEecC----C-----CCCceeEEEEEEECCCHHHHHHHHhCCchhhch
Confidence 4667888887766 6797765331 111232322 1 123467889999999999999999994333322
Q ss_pred cccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecCCeEEEEEEecCCC--CC-CCccce
Q 006760 228 FPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSP--QF-SSQCQS 304 (632)
Q Consensus 228 Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~G~WaVvDvSld~~--~~-~~~~r~ 304 (632)
.| .+...+|+.... +..+++|..+..|.| ++.|||.++|++.+.++|.++++..|+|.. +. ...+|+
T Consensus 68 ~~----~~~~~~vl~~~~-----~~~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~ 137 (193)
T cd00177 68 DK----NFEEFEVIEEID-----EHTDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRA 137 (193)
T ss_pred hh----cceEEEEEEEeC-----CCeEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEE
Confidence 22 344444554432 227899999999999 999999999999999999999999999874 22 246899
Q ss_pred eccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHH
Q 006760 305 HRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRM 363 (632)
Q Consensus 305 rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~ 363 (632)
+.+++|++|+++++|.|+||++-|++..-+. . ..++++.+.-.+..++..++.+
T Consensus 138 ~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~i-P----~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 138 EIKLSGWIIEPLDPGKTKVTYVLQVDPKGSI-P----KSLVNSAAKKQLASFLKDLRKA 191 (193)
T ss_pred EEEccEEEEEECCCCCEEEEEEEeeCCCCCc-c----HHHHHhhhhhccHHHHHHHHHh
Confidence 9999999999999999999999999988765 2 3455555555555565555543
No 5
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.18 E-value=1.3e-09 Score=109.09 Aligned_cols=199 Identities=14% Similarity=0.178 Sum_probs=146.7
Q ss_pred HHHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeE-EechhhHHHHhCCc---h
Q 006760 147 ANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVV-IMNGLALVDMFMDC---S 222 (632)
Q Consensus 147 ~~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV-~m~~~~LVe~lmD~---~ 222 (632)
++.+++|+.++..+ .-|-...+.+ . .++|.+.. .+...-.-|..+.+ ...+..+.+.|+|. .
T Consensus 9 ~~~~~~~~~~~~~~-~~W~~~~~~~-------g-i~iy~r~~-----~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~ 74 (222)
T cd08871 9 DADFEEFKKLCDST-DGWKLKYNKN-------N-VKVWTKNP-----ENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRK 74 (222)
T ss_pred HHHHHHHHHHhcCC-CCcEEEEcCC-------C-eEEEEeeC-----CCCceEEEEEEEEeCCCCHHHHHHHHHChhhhh
Confidence 46788999999654 4797654321 1 25553322 23333455776665 57888999999995 6
Q ss_pred hhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecCCeEEEEEEecCCCC-C--C
Q 006760 223 KWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSPQ-F--S 299 (632)
Q Consensus 223 ~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~G~WaVvDvSld~~~-~--~ 299 (632)
+|-. -+..++.++-+. ....++|..+..|-| |..|||.++|..+..+ |..+|+..|++... + .
T Consensus 75 ~Wd~----~~~e~~~ie~~d--------~~~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~ 140 (222)
T cd08871 75 TWDS----NMIESFDICQLN--------PNNDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRK 140 (222)
T ss_pred hhhh----hhceeEEEEEcC--------CCCEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCC
Confidence 6766 222444444442 224789999999988 8999999999998766 88899999997542 1 2
Q ss_pred CccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 006760 300 SQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCERFACLMVSGTSTR 378 (632)
Q Consensus 300 ~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~cerla~l~~~~ip~~ 378 (632)
..+|.....+|++|++.+++.|+|||+-|++..-+. |. -+++....-.+-+++..|.++|+.....+..+-|..
T Consensus 141 g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~I--P~---~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~~~ 214 (222)
T cd08871 141 GFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGSL--PK---WVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNPEF 214 (222)
T ss_pred CeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCCc--CH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 469999999999999999999999999999988764 22 456666666677999999999999999988887743
No 6
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.05 E-value=5.1e-09 Score=103.81 Aligned_cols=193 Identities=16% Similarity=0.230 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHH-hCC
Q 006760 142 MTDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDM-FMD 220 (632)
Q Consensus 142 ~~~lA~~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~-lmD 220 (632)
-.++++.|++|++.+.. ++-|-...+.. +...+|.+... | ..-.-|..++|...+.++.+. +.|
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~-------~~i~i~~r~~~-----~-~~~~~k~~~~i~~~~~~v~~~l~~d 70 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTT-------WGDVVYSRNVP-----G-VGKVFRLTGVLDCPAEFLYNELVLN 70 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecC-------CCCEEEEEEcC-----C-CceEEEEEEEEcCCHHHHHHHHHcC
Confidence 57889999999999954 55897654321 11244433222 2 114678889999999998764 445
Q ss_pred ---chhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecc-cccccceeeEEEEeeeeecCCeEEEEEEecCCC
Q 006760 221 ---CSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVL-SPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSP 296 (632)
Q Consensus 221 ---~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~-SPLVP~Re~~fLRyckql~~G~WaVvDvSld~~ 296 (632)
+.+|-. .+...++|..-. +...++|.-+.-+ .++|..|||.++|+.++.+ |.++|+..|++..
T Consensus 71 ~~~~~~Wd~-------~~~~~~~i~~~d-----~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~ 137 (208)
T cd08868 71 VESLPSWNP-------TVLECKIIQVID-----DNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHP 137 (208)
T ss_pred ccccceecC-------cccceEEEEEec-----CCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCC
Confidence 467877 555566665432 2335666444333 3689999999999999866 7799999998743
Q ss_pred C-C--CCccceeccCCcceEEeCCC--CceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 006760 297 Q-F--SSQCQSHRFPSGCLIQDLPN--GYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCERF 367 (632)
Q Consensus 297 ~-~--~~~~r~rrlPSGclIq~~~n--G~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~cerl 367 (632)
. + ..++|....++|++|+++++ +.|+|||+-|++..-+- |. -++++.+.-+.-.++..|.++|+.|
T Consensus 138 ~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~i--P~---~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 138 AMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWL--PQ---YLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred CCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCC--cc---eeeehhhHHHHHHHHHHHHHHHhhC
Confidence 2 2 34699999999999999987 68999999999988664 22 4577777888889999999999754
No 7
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.02 E-value=1.4e-08 Score=100.48 Aligned_cols=191 Identities=18% Similarity=0.227 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHHhCC--
Q 006760 143 TDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMD-- 220 (632)
Q Consensus 143 ~~lA~~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~lmD-- 220 (632)
-.++..|.+|++++.. .+.-|....+. + . .++|.+..+ ++..-.-|..+.+..++.++++.|+|
T Consensus 4 ~~~~~~~~~~~~~~~~-~~~~W~~~~~~--~-----~-i~v~~~~~~-----~~~~~~~k~~~~i~~~~~~v~~~l~d~~ 69 (206)
T cd08867 4 KVIAEKLANEALQYIN-DTDGWKVLKTV--K-----N-ITVSWKPST-----EFTGHLYRAEGIVDALPEKVIDVIIPPC 69 (206)
T ss_pred HHHHHHHHHHHHHHhc-CcCCcEEEEcC--C-----C-cEEEEecCC-----CCCCEEEEEEEEEcCCHHHHHHHHHhcC
Confidence 4688999999999977 44789775422 1 1 244432211 22222358888899999999999998
Q ss_pred ---chhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeec-ccccccceeeEEEEeeeeecCCeEEEEEEecCCC
Q 006760 221 ---CSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQV-LSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSP 296 (632)
Q Consensus 221 ---~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v-~SPLVP~Re~~fLRyckql~~G~WaVvDvSld~~ 296 (632)
+.+|.. .+..++.++-|. ....++|..+-- +.++|..|||.++||.++.++|.+.++-.|++.-
T Consensus 70 ~~~r~~Wd~----~~~~~~~le~id--------~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp 137 (206)
T cd08867 70 GGLRLKWDK----SLKHYEVLEKIS--------EDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIP 137 (206)
T ss_pred ccccccccc----cccceEEEEEeC--------CCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCC
Confidence 467875 345666555553 112456653322 2357999999999999999999999999999644
Q ss_pred C--C-CCccceeccCCcceEEeCC--CCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHH
Q 006760 297 Q--F-SSQCQSHRFPSGCLIQDLP--NGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMC 364 (632)
Q Consensus 297 ~--~-~~~~r~rrlPSGclIq~~~--nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~c 364 (632)
. + ..++|+...++|++|++.+ ++.|+|||+-|++..-+- | +-++++.++=..--|+..|++|.
T Consensus 138 ~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i--P---~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 138 ERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI--P---QSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred CCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC--c---HHHHHhhhhhhHHHHHHHHHHhc
Confidence 2 2 2469999999999999886 578999999999987554 2 35676666666667888888874
No 8
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.85 E-value=5.8e-08 Score=97.30 Aligned_cols=170 Identities=18% Similarity=0.209 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHHhCCch
Q 006760 143 TDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMDCS 222 (632)
Q Consensus 143 ~~lA~~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~lmD~~ 222 (632)
..|+++|++|++++-+ +.-.|-.-.++ .+..++.+.. +.+.+---|..|+|..++.+|+|.+-|.+
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~k~~--------~~~~v~~k~~-----~~~~gkl~k~egvi~~~~e~v~~~l~~~e 69 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVVKTS--------KKITVSWKPS-----RKYHGNLYRVEGIIPESPAKLIQFMYQPE 69 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEEecC--------CceEEEEEEc-----CCCCceEEEEEEEecCCHHHHHHHHhccc
Confidence 5789999999999976 55789765433 1113331111 23334567899999999999999998876
Q ss_pred hhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeee-cccccccceeeEEEEeeeeecCCeEEEEEEecCCCC--C-
Q 006760 223 KWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQ-VLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSPQ--F- 298 (632)
Q Consensus 223 ~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~-v~SPLVP~Re~~fLRyckql~~G~WaVvDvSld~~~--~- 298 (632)
...+-=+ .+..++-++-|. +...+.|.-++ .+-++|-+|||..+||.++.++|.++|...|++.-. +
T Consensus 70 ~r~~Wd~-~~~~~~iie~Id--------~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~ 140 (204)
T cd08904 70 HRIKWDK-SLQVYKMLQRID--------SDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPS 140 (204)
T ss_pred hhhhhcc-cccceeeEEEeC--------CCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCC
Confidence 4443222 455566555553 22356775554 345789999999999999999999999999997553 2
Q ss_pred CCccceeccCCcceEEeCCCC--ceEEEEEEeeeecCCC
Q 006760 299 SSQCQSHRFPSGCLIQDLPNG--YSKVTWVEHLEIEDRT 335 (632)
Q Consensus 299 ~~~~r~rrlPSGclIq~~~nG--~skVtwVEH~e~d~~~ 335 (632)
..++|++-.|+||+|++.+++ +|++||+-+++..-+-
T Consensus 141 ~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~l 179 (204)
T cd08904 141 SNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGNL 179 (204)
T ss_pred CCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCCC
Confidence 347999999999999999874 8999999997776553
No 9
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.72 E-value=4.7e-07 Score=90.50 Aligned_cols=189 Identities=14% Similarity=0.247 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHHhCCc-
Q 006760 143 TDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMDC- 221 (632)
Q Consensus 143 ~~lA~~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~lmD~- 221 (632)
.+++++|+++++.+-+ .+..|-...+. .+.++|.+... ...| -.-|.-|+|..++.+|++.|+|.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~~W~~~~~~--------~~i~v~~~~~~--~~~~---~~~k~e~~i~~s~~~~~~~l~d~~ 69 (208)
T cd08903 4 AELAESVADKMLLYRR-DESGWKTCRRT--------NEVAVSWRPSA--EFAG---NLYKGEGIVYATLEQVWDCLKPAA 69 (208)
T ss_pred HHHHHHHHHHHHhhhc-cccCCEEEEcC--------CCEEEEeeecC--CCCC---cEEEEEEEecCCHHHHHHHHHhcc
Confidence 5789999999999874 66789765432 12355533211 0012 12788899999999999999965
Q ss_pred ----hhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccc---cccceeeEEEEeeeeecCCeEEEEEEecC
Q 006760 222 ----SKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSP---VVPTREFYVLRYCQQIEQGSWAVVNVSYD 294 (632)
Q Consensus 222 ----~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SP---LVP~Re~~fLRyckql~~G~WaVvDvSld 294 (632)
.+|.. .+...++|..-. +...+.|. ..|.| +|.+|||-.+|+.++.++|.++|.-.|..
T Consensus 70 ~~~r~~W~~-------~~~~~~vle~id-----~~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~ 135 (208)
T cd08903 70 GGLRVKWDQ-------NVKDFEVVEAIS-----DDVSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVE 135 (208)
T ss_pred chhhhhhhh-------ccccEEEEEEec-----CCEEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEecc
Confidence 68988 666666776543 22233444 55655 79999999999999999999887777776
Q ss_pred CC--CC-CCccceeccCCcceEEeCCC--CceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHH
Q 006760 295 SP--QF-SSQCQSHRFPSGCLIQDLPN--GYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMC 364 (632)
Q Consensus 295 ~~--~~-~~~~r~rrlPSGclIq~~~n--G~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~c 364 (632)
.- ++ ..++|++..|+|++|...++ +.|+|||+-|++..-+- | +.++++.++=...--+..|.++.
T Consensus 136 h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~i--P---~~lvn~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08903 136 HPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYL--P---QTVVDSFFPASMAEFYNNLTKAV 205 (208)
T ss_pred CCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCc--C---HHHHHHHhhHHHHHHHHHHHHHH
Confidence 52 22 34799999999999999954 58999999888876443 3 24554433322223344444443
No 10
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.72 E-value=2.5e-07 Score=91.68 Aligned_cols=164 Identities=18% Similarity=0.242 Sum_probs=121.6
Q ss_pred HHHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHHhCCc-hhhh
Q 006760 147 ANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMDC-SKWV 225 (632)
Q Consensus 147 ~~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~lmD~-~~W~ 225 (632)
+.+.++|++-+...+.-|....+. + .+ +++.+... .++...+=|..++|.-.+.++++.|+|. .+|-
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~--~-----gi-~I~~k~~~----~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~Wd 71 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSS--D-----HV-ELAFKKVD----DGHPLRLWRASTEVEAPPEEVLQRILRERHLWD 71 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecC--C-----cE-EEEEEeCC----CCCcEEEEEEEEEeCCCHHHHHHHHHHHHhccc
Confidence 567889999999889999765421 1 22 44422222 3445567788889998899999877664 5576
Q ss_pred hhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeee-ecCCeEEEEEEecCC--CCCCCcc
Q 006760 226 ELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQ-IEQGSWAVVNVSYDS--PQFSSQC 302 (632)
Q Consensus 226 ~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckq-l~~G~WaVvDvSld~--~~~~~~~ 302 (632)
. .+...++|..... ...+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++. ..+..++
T Consensus 72 ~-------~~~~~~vie~id~-----~~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~g~V 138 (197)
T cd08869 72 D-------DLLQWKVVETLDE-----DTEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPLGGV 138 (197)
T ss_pred h-------hhheEEEEEEecC-----CcEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCCCCE
Confidence 6 5555555554322 23578888888877 59999999999875 688899999999963 2223679
Q ss_pred ceeccCCcceEEeCCCCceEEEEEEeeeecCCC
Q 006760 303 QSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRT 335 (632)
Q Consensus 303 r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~ 335 (632)
|++.+++|++|++..+|.|+|||+-|++..-+.
T Consensus 139 R~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~i 171 (197)
T cd08869 139 RAVVLASRYLIEPCGSGKSRVTHICRVDLRGRS 171 (197)
T ss_pred EEEEEeeeEEEEECCCCCeEEEEEEEECCCCCC
Confidence 999999999999999999999999999876654
No 11
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.64 E-value=4.8e-07 Score=90.46 Aligned_cols=192 Identities=13% Similarity=0.214 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHHhC-
Q 006760 141 LMTDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFM- 219 (632)
Q Consensus 141 ~~~~lA~~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~lm- 219 (632)
--..++.+|++|++++.+ .+..|-...++ .+ . .++|.+... +.. -+-|.-++|..++.+|++.|.
T Consensus 5 ~y~~~~~~~~~~~~~~~~-~~~~W~~~~~~-~~-----g-i~v~s~~~~-----~~~-k~~k~e~~i~~~~~~l~~~l~~ 70 (209)
T cd08905 5 SYIKQGEEALQKSLSILQ-DQEGWKTEIVA-EN-----G-DKVLSKVVP-----DIG-KVFRLEVVVDQPLDNLYSELVD 70 (209)
T ss_pred HHHHHHHHHHHHHHHHhc-cccCCEEEEec-CC-----C-CEEEEEEcC-----CCC-cEEEEEEEecCCHHHHHHHHHh
Confidence 346789999999999986 66689765322 01 1 133422211 111 456677899999999995555
Q ss_pred Cc---hhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccc--cccceeeEEEEeeeeecCCeEEEEEEecC
Q 006760 220 DC---SKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSP--VVPTREFYVLRYCQQIEQGSWAVVNVSYD 294 (632)
Q Consensus 220 D~---~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SP--LVP~Re~~fLRyckql~~G~WaVvDvSld 294 (632)
|. .+|.. .|.-.++|..... .-.++|. ...|.| +|..|||-.+|+.++.+++. +++..|.+
T Consensus 71 d~e~~~~W~~-------~~~~~~vl~~id~-----~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~~ 136 (209)
T cd08905 71 RMEQMGEWNP-------NVKEVKILQRIGK-----DTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMATH 136 (209)
T ss_pred chhhhceecc-------cchHHHHHhhcCC-----CceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEeec
Confidence 42 67777 6666667765332 2245674 667766 79999999999999986654 45567755
Q ss_pred CC--CC-CCccceeccCCcceEEeCCC--CceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHHH
Q 006760 295 SP--QF-SSQCQSHRFPSGCLIQDLPN--GYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCE 365 (632)
Q Consensus 295 ~~--~~-~~~~r~rrlPSGclIq~~~n--G~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~ce 365 (632)
.- ++ ..++|.+..++|++|+++++ |.++|||+-|++..-+- | ..+++..++=..-.++..|+++.+
T Consensus 137 ~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~i--P---~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 137 FGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWL--P---KSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred CCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCC--C---HHHHHHHhHHhHHHHHHHHHHHHh
Confidence 33 22 24699999999999999988 99999999999987664 2 256666666656678888888765
No 12
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.55 E-value=1.3e-06 Score=87.81 Aligned_cols=128 Identities=20% Similarity=0.255 Sum_probs=98.0
Q ss_pred CCeeeeecceeeEEechhhH-HHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeE
Q 006760 195 NVRTESSRDSGVVIMNGLAL-VDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFY 273 (632)
Q Consensus 195 g~~~EASR~~gvV~m~~~~L-Ve~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~ 273 (632)
+...-.-|....|.-.+..+ -.++.++.+|-.-| ..+++++-| ++...+.|--+.-|-|+ |.|||.
T Consensus 48 ~~~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~----~~~~~ie~l--------d~~tdi~~y~~~~~~P~-~~RD~v 114 (205)
T cd08909 48 GNPLRLWKVSVEVEAPPSVVLNRVLRERHLWDEDF----LQWKVVETL--------DKQTEVYQYVLNCMAPH-PSRDFV 114 (205)
T ss_pred CCceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhhc----ceeEEEEEe--------CCCcEEEEEEeecCCCC-CCCEEE
Confidence 44445667777776666666 44677888898822 245555554 23356777777777776 999999
Q ss_pred EEEeeee-ecCCeEEEEEEecCCCCC--CCccceeccCCcceEEeCCCCceEEEEEEeeeecCCC
Q 006760 274 VLRYCQQ-IEQGSWAVVNVSYDSPQF--SSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRT 335 (632)
Q Consensus 274 fLRyckq-l~~G~WaVvDvSld~~~~--~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~ 335 (632)
.+|+-++ +++|.++|+..|++.... ..++|+..+=+|++|+++++|.|+||++-|++..-+.
T Consensus 115 ~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~~ 179 (205)
T cd08909 115 VLRSWRTDLPKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGHS 179 (205)
T ss_pred EEEEEEEeCCCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCCC
Confidence 9999765 579999999999997643 3468999999999999999999999999999876554
No 13
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.50 E-value=1.3e-06 Score=100.46 Aligned_cols=125 Identities=19% Similarity=0.318 Sum_probs=103.1
Q ss_pred eeecceeeEEechhhHHHHhCCch----hhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeee--cccccccceee
Q 006760 199 ESSRDSGVVIMNGLALVDMFMDCS----KWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQ--VLSPVVPTREF 272 (632)
Q Consensus 199 EASR~~gvV~m~~~~LVe~lmD~~----~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~--v~SPLVP~Re~ 272 (632)
-+=|+.|+|...+.+|.|.+|+.+ +|-. .+.+++-++-| +|...++|.-++ .+...+-+|||
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~----~~~~~~vIE~I--------D~htdI~Y~~~~~~~~~~~ispRDF 294 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDC----SFQYGSLVEEV--------DGHTAILYHRLQLDWFPMFVWPRDL 294 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchh----cccceEEEEEe--------cCCeEEEEEEeccccccCccCccee
Confidence 466888999999999999999777 7766 44566666655 566788888775 44567777999
Q ss_pred EEEEeeeeecCCeEEEEEEecCCCC--C-CCccceeccCCcceEEeCC--C--CceEEEEEEeeeecCCC
Q 006760 273 YVLRYCQQIEQGSWAVVNVSYDSPQ--F-SSQCQSHRFPSGCLIQDLP--N--GYSKVTWVEHLEIEDRT 335 (632)
Q Consensus 273 ~fLRyckql~~G~WaVvDvSld~~~--~-~~~~r~rrlPSGclIq~~~--n--G~skVtwVEH~e~d~~~ 335 (632)
.++||-++.+||+++|+=+|+..-. + ..++|.+..|+||+|.+++ + -.|.|+|+-|++..-|.
T Consensus 295 V~~Rywrr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~ 364 (719)
T PLN00188 295 CYVRYWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWG 364 (719)
T ss_pred EEEEEEEEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCccc
Confidence 9999999999999999999987653 2 2479999999999999964 3 37999999999999998
No 14
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.34 E-value=1.6e-05 Score=79.88 Aligned_cols=192 Identities=13% Similarity=0.198 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCceeecC--CCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHH-HH
Q 006760 141 LMTDIAANAMEELLRLLQTNEPLWMKSS--TDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALV-DM 217 (632)
Q Consensus 141 ~~~~lA~~Am~El~~la~~~eplWi~~~--~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LV-e~ 217 (632)
-....+++||+++.++... +..|.-.. +.| .++|.+... .....| |.-++|...+..|. +.
T Consensus 5 ~~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g---------i~V~s~~~~-~~~~~f-----k~~~~v~~~~~~l~~~l 68 (209)
T cd08906 5 EYVRQGKEALAVVEQILAQ-EENWKFEKNNDNG---------DTVYTLEVP-FHGKTF-----ILKAFMQCPAELVYQEV 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC---------CEEEEeccC-CCCcEE-----EEEEEEcCCHHHHHHHH
Confidence 3467799999999999765 45797532 122 144532221 011223 66667777888885 67
Q ss_pred hCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccc--cccceeeEEEEeeeeecCCeEEEEEEecCC
Q 006760 218 FMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSP--VVPTREFYVLRYCQQIEQGSWAVVNVSYDS 295 (632)
Q Consensus 218 lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SP--LVP~Re~~fLRyckql~~G~WaVvDvSld~ 295 (632)
|.|.+...+-.+ .+...++|..... .--+.| +.-.|.+ .|..|||-.+|+.++.+++ ++++..|++.
T Consensus 69 l~D~~~~~~W~~----~~~~~~vi~~~~~-----~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~ 137 (209)
T cd08906 69 ILQPEKMVLWNK----TVSACQVLQRVDD-----NTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTH 137 (209)
T ss_pred HhChhhccccCc----cchhhhheeeccC-----CcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEec
Confidence 888754333332 4444556654332 124556 6666664 6899999999999998888 5777788764
Q ss_pred CC--C-CCccceeccCCcceEEeC--CCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHH
Q 006760 296 PQ--F-SSQCQSHRFPSGCLIQDL--PNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMC 364 (632)
Q Consensus 296 ~~--~-~~~~r~rrlPSGclIq~~--~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~c 364 (632)
.. + ..++|.+..++|++|++. .+|.|+|||+-|++..-+- | +.+++..++=..-.-+..|.++.
T Consensus 138 ~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~l--P---~~lvN~~~~~~~~~~~~~LR~~~ 206 (209)
T cd08906 138 SHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRL--P---RYLIHQSLAATMFEFASHLRQRI 206 (209)
T ss_pred CCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCC--C---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2 347999999999999985 6779999999999987654 2 24555544433333444444443
No 15
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=98.23 E-value=1.8e-05 Score=79.16 Aligned_cols=182 Identities=15% Similarity=0.185 Sum_probs=125.1
Q ss_pred HhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEE-echhhHHHHhCCchhhhhhcccccc
Q 006760 155 RLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVI-MNGLALVDMFMDCSKWVELFPTIVS 233 (632)
Q Consensus 155 ~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~-m~~~~LVe~lmD~~~W~~~Fp~IVs 233 (632)
..-+.+.+-|-...+. +.+ ++|.+.. ++...-.=|+.+.+. ..+..|.+.|+|.+...+-.+.+..
T Consensus 18 ~~~~~~~~~W~l~~~~-------~~i-~Vy~r~~-----~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~ 84 (207)
T cd08910 18 QQPALDGAAWELLVES-------SGI-SIYRLLD-----EQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE 84 (207)
T ss_pred cCCCCCCCCeEEEEec-------CCe-EEEEecc-----CCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh
Confidence 3334455679765432 133 5553322 233333678888887 7999999999996543333333332
Q ss_pred cceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeee-ecCC--eEEEEEEecCCCC-C--CCccceecc
Q 006760 234 MAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQ-IEQG--SWAVVNVSYDSPQ-F--SSQCQSHRF 307 (632)
Q Consensus 234 ~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckq-l~~G--~WaVvDvSld~~~-~--~~~~r~rrl 307 (632)
++.-.. .+ -.++|-.+..|-| +..||+.++|-... ..+| .|+|+..|.+.-. + ..++|....
T Consensus 85 ------~~~~~~----~~-~~i~y~~~k~PwP-vs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~ 152 (207)
T cd08910 85 ------LYEKEC----DG-ETVIYWEVKYPFP-LSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQY 152 (207)
T ss_pred ------heeecC----CC-CEEEEEEEEcCCC-CCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEE
Confidence 222211 12 2678999999999 99999999964443 3344 6898888876432 1 246999999
Q ss_pred CCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHHHH
Q 006760 308 PSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCER 366 (632)
Q Consensus 308 PSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~cer 366 (632)
-+|.+|++..++.|+|+++-|.+-.-+- |. -+++.....++..|+..|+..|.+
T Consensus 153 ~~~~~i~p~~~~~t~i~~~~~~DPgG~I--P~---wlvN~~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 153 KQSLAIESDGKKGSKVFMYYFDNPGGMI--PS---WLINWAAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred EEEEEEEeCCCCceEEEEEEEeCCCCcc--hH---HHHHHHHHHhhHHHHHHHHHHHhc
Confidence 9999999998889999999999875554 21 377777888899999999999864
No 16
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.12 E-value=4.4e-05 Score=76.63 Aligned_cols=167 Identities=16% Similarity=0.217 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHHhCC--
Q 006760 143 TDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMD-- 220 (632)
Q Consensus 143 ~~lA~~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~lmD-- 220 (632)
..+|.+.-+++++--+.++-.|-.-.+.+ + | -+..+ +.+-|.+---|.-|+|.-.+..|++.+-+
T Consensus 4 ~~~~~~~~~~~~~y~~~~~~~Wkl~k~~~-~------~-~v~~k-----~~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~ 70 (202)
T cd08902 4 ASKTTKLQNTLIQYHSILEEEWRVAKKSK-D------V-TVWRK-----PSEEFGGYLYKAQGVVEDVYNRIVDHIRPGP 70 (202)
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEeCC-C------E-EEEEe-----cCCcCCCceEEEEEEecCCHHHHHHHHhccc
Confidence 56788888889998777999997654321 1 1 11100 01233344556778888889999999999
Q ss_pred -chhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecCCeEEEEEEecCCCCC-
Q 006760 221 -CSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSPQF- 298 (632)
Q Consensus 221 -~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~G~WaVvDvSld~~~~- 298 (632)
+.+|-+ .....+||..-. .+++-.-|.=.-.+-++|-+|||.-+||+++.++|. ..+=||++.-..
T Consensus 71 ~r~~Wd~-------~v~~~~Iie~Id----~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~p 138 (202)
T cd08902 71 YRLDWDS-------LMTSMDIIEEFE----ENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEAR 138 (202)
T ss_pred chhcccc-------hhhheeHhhhhc----CCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCC
Confidence 559998 444444554332 223222255556777899999999999999999998 777899886543
Q ss_pred CCccceeccCCcceEEeCCCC--ceEEEEEEeeeecCC
Q 006760 299 SSQCQSHRFPSGCLIQDLPNG--YSKVTWVEHLEIEDR 334 (632)
Q Consensus 299 ~~~~r~rrlPSGclIq~~~nG--~skVtwVEH~e~d~~ 334 (632)
..++|.+..|+||++++.+|| .|+.||+-++++.-+
T Consensus 139 pg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~ 176 (202)
T cd08902 139 PNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM 176 (202)
T ss_pred CCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC
Confidence 357999999999999999988 677889999777654
No 17
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=98.09 E-value=0.00014 Score=72.64 Aligned_cols=190 Identities=18% Similarity=0.227 Sum_probs=135.0
Q ss_pred HHHHHHhccCCC--CceeecCCC-CccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeE-EechhhHHHHhCCc---h
Q 006760 150 MEELLRLLQTNE--PLWMKSSTD-GRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVV-IMNGLALVDMFMDC---S 222 (632)
Q Consensus 150 m~El~~la~~~e--plWi~~~~~-g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV-~m~~~~LVe~lmD~---~ 222 (632)
++||+...+.+. .-|-...+. |+. . +| +++.+.. +|...-.=|..+++ ...+..|.+.|+|. .
T Consensus 8 ~~~~~~~~~~~~~~~~W~~~~~k~~~~-~---~i-~vy~r~~-----~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~ 77 (209)
T cd08870 8 LRDLVQELQEGAEGQAWQQVMDKSTPD-M---SY-QAWRRKP-----KGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRK 77 (209)
T ss_pred HHHHHHHhcCcCCCCcceEhhhccCCC-c---eE-EEEeccc-----CCCCceEEEEEEEEcCCCHHHHHHHHcChhhHh
Confidence 345666655443 468776532 211 0 14 4553332 23334457778877 56999999999996 4
Q ss_pred hhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecCCeEEEEEEecCCCC-CC-C
Q 006760 223 KWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSPQ-FS-S 300 (632)
Q Consensus 223 ~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~G~WaVvDvSld~~~-~~-~ 300 (632)
+|.. .+...++|..... .| ..++|-.+..|-|+ -.||+-+.|-..+..+|..+|+=.|++... +. .
T Consensus 78 ~Wd~-------~~~~~~~le~~~~---~~-~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~~ 145 (209)
T cd08870 78 KWDE-------TVIEHETLEEDEK---SG-TEIVRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPYPSVPRSG 145 (209)
T ss_pred hhhh-------heeeEEEEEecCC---CC-cEEEEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCCC
Confidence 6666 5555666654211 02 47899999999988 899999998777777999999888887532 22 5
Q ss_pred ccceeccCCcceEEeC--CCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHHHH
Q 006760 301 QCQSHRFPSGCLIQDL--PNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCER 366 (632)
Q Consensus 301 ~~r~rrlPSGclIq~~--~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~cer 366 (632)
.+|.+..=||++|++. .+|.++++++-|.+- ...+|. -|++.....|+..++..|.+.|..
T Consensus 146 ~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp--~G~IP~---wlvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 146 RKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP--DGGIPR---ELAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred cEEEEEEEeEEEEEEecCCCCceEEEEEEEECC--CCCCCH---HHHHHHHHhhhHHHHHHHHHHHhc
Confidence 7899999999999999 789999999999964 321443 678888899999999999999863
No 18
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.04 E-value=5.8e-05 Score=75.98 Aligned_cols=164 Identities=18% Similarity=0.237 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhccCCCCceeecCC-CCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHHhCC-chh
Q 006760 146 AANAMEELLRLLQTNEPLWMKSST-DGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMD-CSK 223 (632)
Q Consensus 146 A~~Am~El~~la~~~eplWi~~~~-~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~lmD-~~~ 223 (632)
-++.+++|++.|..--=-|+.-.. .+-| | .|.| +.+|...-.-|....+.-.+.+++..|+| +.+
T Consensus 11 ~~~~~~~l~~e~~~k~k~w~~~~~~~~~e-l---~~~k---------~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~ 77 (204)
T cd08908 11 LQDCVDGLFKEVKEKFKGWVSYSTSEQAE-L---SYKK---------VSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHL 77 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCcEE-E---EEec---------cCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHH
Confidence 456778888887755556766421 1111 0 1211 12344455667777777778888855554 577
Q ss_pred hhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeee-eecCCeEEEEEEecCCCC-CCCc
Q 006760 224 WVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQ-QIEQGSWAVVNVSYDSPQ-FSSQ 301 (632)
Q Consensus 224 W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyck-ql~~G~WaVvDvSld~~~-~~~~ 301 (632)
|.. .+.-.+||..-... -.+.|-.+..|-| +|.|||.++|-.+ +.++|..+|+-.|++.-. +...
T Consensus 78 Wd~-------~~~e~~vIe~ld~~-----~~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~~ 144 (204)
T cd08908 78 WDV-------DLLDSKVIEILDSQ-----TEIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVAG 144 (204)
T ss_pred HHH-------HhhheEeeEecCCC-----ceEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcCc
Confidence 888 55555565543322 2578888899988 7999999997765 479999999999987543 2235
Q ss_pred cceeccCCcceEEeCCCCceEEEEEEeeeecCCC
Q 006760 302 CQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRT 335 (632)
Q Consensus 302 ~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~ 335 (632)
+|.+.+-+|++|++.++|.|+||.+-|++---+.
T Consensus 145 VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~i 178 (204)
T cd08908 145 VRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHM 178 (204)
T ss_pred eEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCC
Confidence 8999999999999999999999999999865443
No 19
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.03 E-value=0.00018 Score=71.78 Aligned_cols=195 Identities=15% Similarity=0.142 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHHhCCch
Q 006760 143 TDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMDCS 222 (632)
Q Consensus 143 ~~lA~~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~lmD~~ 222 (632)
++=+...|+|+.+..+. +.-|....+. .+.++|-+.. ++-..-+-|.-|++.-+...+.++|.|.+
T Consensus 4 ~~~~~~~~~~~~~~l~~-~~~W~~~~~~--------~~i~v~~r~~-----~~~~~~~~k~e~~i~~~~~~~~~vl~d~~ 69 (215)
T cd08877 4 IRQEATIMQENLKDLDE-SDGWTLQKES--------EGIRVYYKFE-----PDGSLLSLRMEGEIDGPLFNLLALLNEVE 69 (215)
T ss_pred HHHHHHHHHHHHhcccC-CCCcEEeccC--------CCeEEEEEeC-----CCCCEEEEEEEEEecCChhHeEEEEehhh
Confidence 44556788898888776 5579876532 1224442221 23335677888999999999999999998
Q ss_pred hhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEE-Eeeeee-cCCeEEEEEEecCCC----
Q 006760 223 KWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVL-RYCQQI-EQGSWAVVNVSYDSP---- 296 (632)
Q Consensus 223 ~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fL-Ryckql-~~G~WaVvDvSld~~---- 296 (632)
...+-+|.. .+++.++.++. .-++.|..+.+|-| +..||+.+. +.+.++ ++|..+|+=.|++.-
T Consensus 70 ~~~~W~p~~-~~~~~l~~~~~--------~~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~ 139 (215)
T cd08877 70 LYKTWVPFC-IRSKKVKQLGR--------ADKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFL 139 (215)
T ss_pred hHhhhcccc-eeeEEEeecCC--------ceEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccc
Confidence 777777763 34444444421 13678888888888 888999975 557777 999999999999832
Q ss_pred -------CC-C-CccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHHH
Q 006760 297 -------QF-S-SQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCE 365 (632)
Q Consensus 297 -------~~-~-~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~ce 365 (632)
+. . ..+|.....+|++|+++++|.++|+++-|++-.-+- +|.= |++...--.+..-+..|++.|+
T Consensus 140 ~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~-IP~~---liN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 140 KLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSL-VPKS---LLNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred cccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCccc-CCHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 22 2 468889999999999999999999999997644332 4443 3333333335566666666665
No 20
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.95 E-value=0.00022 Score=69.40 Aligned_cols=151 Identities=14% Similarity=0.110 Sum_probs=105.5
Q ss_pred eeecceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEee
Q 006760 199 ESSRDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYC 278 (632)
Q Consensus 199 EASR~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyc 278 (632)
-.-|.+++|..++.++.+++.|.+.|.+.=| .+...+||.....+ -.++|..+..|=| |..|||.+.|..
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~----~~~~~~vie~~~~~-----~~i~~~~~~~p~p-vs~Rdfv~~~~~ 110 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTESYPQWMP----NCKESRVLKRTDDN-----ERSVYTVIDLPWP-VKDRDMVLRSTT 110 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHhHHHHHh----hcceEEEeecCCCC-----cEEEEEEEecccc-cCCceEEEEEEE
Confidence 3558888899999999999999988766444 34445566643211 2556666666655 789999987654
Q ss_pred eee-cCCeEEEEEEecCCCCC--CCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHH
Q 006760 279 QQI-EQGSWAVVNVSYDSPQF--SSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADR 355 (632)
Q Consensus 279 kql-~~G~WaVvDvSld~~~~--~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~R 355 (632)
... ++|..+|.=.|.+...+ ..++|.+.+.+|+.|++.++|.|+||++-|++..-+. ..-+.+.+.. -+..+
T Consensus 111 ~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~i-P~~lv~~~~~----~~~~~ 185 (195)
T cd08876 111 EQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSI-PGWLANAFAK----DAPYN 185 (195)
T ss_pred EEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCC-CHHHHHHHHH----HHHHH
Confidence 433 36777776666654312 2457899999999999999999999999999887554 3344444433 34567
Q ss_pred HHHHHHHHH
Q 006760 356 WLATLQRMC 364 (632)
Q Consensus 356 WlatLqR~c 364 (632)
++..|.++|
T Consensus 186 ~l~~l~~~~ 194 (195)
T cd08876 186 TLENLRKQL 194 (195)
T ss_pred HHHHHHHhh
Confidence 777777765
No 21
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.87 E-value=0.00015 Score=72.92 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=91.3
Q ss_pred CCCeeeeecceeeEEechhhHHHHhCCch---hhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccc-cc
Q 006760 194 PNVRTESSRDSGVVIMNGLALVDMFMDCS---KWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVV-PT 269 (632)
Q Consensus 194 ~g~~~EASR~~gvV~m~~~~LVe~lmD~~---~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLV-P~ 269 (632)
.++.+ -+.|...+.+|.+.|.|.. +|.. .+++.+||..- +....+.|.....|=|+. +.
T Consensus 45 ~~~~g-----e~~v~as~~~v~~ll~D~~~r~~Wd~-------~~~~~~vl~~~-----~~d~~i~y~~~~~Pwp~~~~~ 107 (205)
T cd08874 45 HGFLG-----AGVIKAPLATVWKAVKDPRTRFLYDT-------MIKTARIHKTF-----TEDICLVYLVHETPLCLLKQP 107 (205)
T ss_pred ceEEE-----EEEEcCCHHHHHHHHhCcchhhhhHH-------hhhheeeeeec-----CCCeEEEEEEecCCCCCCCCC
Confidence 46664 4477889999999998874 5666 77777788743 233467777776665553 99
Q ss_pred eeeEEEEeeeeecCCeEEEEEEecCC-CCC--C-CccceeccCCcceEEeC---CCCceEEEEEEeeeec
Q 006760 270 REFYVLRYCQQIEQGSWAVVNVSYDS-PQF--S-SQCQSHRFPSGCLIQDL---PNGYSKVTWVEHLEIE 332 (632)
Q Consensus 270 Re~~fLRyckql~~G~WaVvDvSld~-~~~--~-~~~r~rrlPSGclIq~~---~nG~skVtwVEH~e~d 332 (632)
|||..+|-....+++.. |.=.|++. ..+ . .++|.+.+++|++|+++ ++|.|+||.+-|+|--
T Consensus 108 RDfV~l~~~~~~~~~~v-i~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPg 176 (205)
T cd08874 108 RDFCCLQVEAKEGELSV-VACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALC 176 (205)
T ss_pred CeEEEEEEEEECCCcEE-EEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCC
Confidence 99999995555555544 66677765 322 2 47999999999999999 9999999999999976
No 22
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.74 E-value=0.00057 Score=68.38 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=112.4
Q ss_pred eeecceeeE-EechhhHHHHhCCch---hhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEE
Q 006760 199 ESSRDSGVV-IMNGLALVDMFMDCS---KWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYV 274 (632)
Q Consensus 199 EASR~~gvV-~m~~~~LVe~lmD~~---~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~f 274 (632)
-.=|..+++ ...+..+++.|+|.+ +|.. .+...++|.-... . ..+++|..+..|-|+ -.||+.+
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~-------~~~~~~~le~~~~---~-~~~i~y~~~~~P~P~-s~RD~V~ 112 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQLDLEYRKKWDA-------TAVELEVVDEDPE---T-GSEIIYWEMQWPKPF-ANRDYVY 112 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHh-------hheeEEEEEccCC---C-CCEEEEEEEECCCCC-CCccEEE
Confidence 356776655 788999999999985 5666 5555667764221 0 237899999999996 8999999
Q ss_pred EEeeeee-cCCeEEEEEEecCCCC-C--CCccceeccCCcceEEeCC---CCceEEEEEEeeeecCCCccchhhhhhhcc
Q 006760 275 LRYCQQI-EQGSWAVVNVSYDSPQ-F--SSQCQSHRFPSGCLIQDLP---NGYSKVTWVEHLEIEDRTPIHRLYQDLIQS 347 (632)
Q Consensus 275 LRyckql-~~G~WaVvDvSld~~~-~--~~~~r~rrlPSGclIq~~~---nG~skVtwVEH~e~d~~~~vh~lyrpl~~S 347 (632)
.|-..+. ++|.++|+-.|++... + ..++|.....+|++|++.. ++.++|+++-|. |....+|. -+++.
T Consensus 113 ~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~---~lvN~ 187 (207)
T cd08911 113 VRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPS---YITSW 187 (207)
T ss_pred EEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCH---HHHHH
Confidence 8877666 4577889988887532 2 3469999999999999983 677999988886 55532443 35666
Q ss_pred cchhhHHHHHHHHHHHHHH
Q 006760 348 GMAFGADRWLATLQRMCER 366 (632)
Q Consensus 348 g~afGA~RWlatLqR~cer 366 (632)
-..-++-.|+..|.+-|..
T Consensus 188 ~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 188 VAMSGMPDFLERLRNAALK 206 (207)
T ss_pred HHHhhccHHHHHHHHHHhc
Confidence 6677788999999998864
No 23
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.74 E-value=0.00018 Score=72.43 Aligned_cols=164 Identities=16% Similarity=0.214 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhccCCCCceeecCCC-CccccChHHHhhhCCCCcCCCCCCCCeeeeecceee-EEechhhHHHHhCCchh
Q 006760 146 AANAMEELLRLLQTNEPLWMKSSTD-GRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGV-VIMNGLALVDMFMDCSK 223 (632)
Q Consensus 146 A~~Am~El~~la~~~eplWi~~~~~-g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gv-V~m~~~~LVe~lmD~~~ 223 (632)
-+..+++|++-+....--|+...+. +-|+ .| +.. + .|...--=|.+.- -...+.-|-++|.|+..
T Consensus 11 l~~~~~~~lre~~ek~kgW~~~~~~~~vev----~~-kk~----~----d~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~ 77 (205)
T cd08907 11 LEDNVQCLLREASERFKGWHSAPGPDNTEL----AC-KKV----G----DGHPLRLWKVSTEVEAPPSVVLQRVLRERHL 77 (205)
T ss_pred HHHHHHHHHHHhhhccCCceeecCCCCcEE----EE-EeC----C----CCCceEEEEEEEEecCCCHHHHHHHhhchhh
Confidence 4567889999998777789875432 2221 11 211 1 1111111122221 22345677899999999
Q ss_pred hhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeee-eecCCeEEEEEEecCCCCC--CC
Q 006760 224 WVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQ-QIEQGSWAVVNVSYDSPQF--SS 300 (632)
Q Consensus 224 W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyck-ql~~G~WaVvDvSld~~~~--~~ 300 (632)
|-+- +-+.++++.|.. + + ++-|=-+.-| +.+|.|||.+||.-+ .+..|.-+|+.+|++.... ..
T Consensus 78 WD~~----m~e~~~Ie~Ld~----n-~---dI~yY~~~~~-~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~ 144 (205)
T cd08907 78 WDED----LLHSQVIEALEN----N-T---EVYHYVTDSM-APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEA 144 (205)
T ss_pred hhHH----HHhhhhheeecC----C-C---EEEEEEecCC-CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCC
Confidence 9873 347788888752 1 1 2333333333 558999999999864 4677899999999987643 22
Q ss_pred ccceeccCCcceEEeCCCCceEEEEEEeeeecCCC
Q 006760 301 QCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRT 335 (632)
Q Consensus 301 ~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~ 335 (632)
.+|+--+=||+||++++.|.|+||-+-|++..-+.
T Consensus 145 gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~~ 179 (205)
T cd08907 145 GVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGRS 179 (205)
T ss_pred CeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCCC
Confidence 39999999999999999999999999999987665
No 24
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.71 E-value=0.0012 Score=67.81 Aligned_cols=190 Identities=14% Similarity=0.268 Sum_probs=127.7
Q ss_pred HHHHHHHHHhccC--CCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEE-echhhHHHHhCCch-
Q 006760 147 ANAMEELLRLLQT--NEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVI-MNGLALVDMFMDCS- 222 (632)
Q Consensus 147 ~~Am~El~~la~~--~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~-m~~~~LVe~lmD~~- 222 (632)
.+-.+|.+++|+. ++.-|--..+. +.+ ++|.+... ..|+....=|+.++|. ..+..+.+.|.|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~W~l~~~~-------~gi-kVy~r~~~---~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~ 77 (235)
T cd08872 9 DEKVQEQLTYALEDVGADGWQLFAEE-------GEM-KVYRREVE---EDGVVLDPLKATHAVKGVTGHEVCHYFFDPDV 77 (235)
T ss_pred HHHHHHHHHHHHccCCCCCCEEEEeC-------Cce-EEEEEECC---CCCceeeeEEEEEEECCCCHHHHHHHHhChhh
Confidence 4556788888875 55578654322 122 56644322 1245455678888888 88999999999985
Q ss_pred --hhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecC-------CeEEEEEEec
Q 006760 223 --KWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQ-------GSWAVVNVSY 293 (632)
Q Consensus 223 --~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~-------G~WaVvDvSl 293 (632)
+|.. .+...+||..... ...+.|..+-.|=| +..|||.|+|+-++.++ +.|+|+..|+
T Consensus 78 r~~Wd~-------~~~~~~vie~l~~-----~~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv 144 (235)
T cd08872 78 RMDWET-------TLENFHVVETLSQ-----DTLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSV 144 (235)
T ss_pred HHHHHh-------hhheeEEEEecCC-----CCEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecc
Confidence 5555 4555666655432 22567888888999 69999999999999876 7899999998
Q ss_pred CCCC--C-CCccceec---cCCcceEEe------C--CCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHH
Q 006760 294 DSPQ--F-SSQCQSHR---FPSGCLIQD------L--PNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLAT 359 (632)
Q Consensus 294 d~~~--~-~~~~r~rr---lPSGclIq~------~--~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlat 359 (632)
+.-. + ..++|.+. +=.|.+|.+ + .||.|+||++-|++---+-|. .+++.....++-++|..
T Consensus 145 ~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~iP~-----wvvn~~~k~~~P~~l~~ 219 (235)
T cd08872 145 DHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGWAPA-----SVLRAVYKREYPKFLKR 219 (235)
T ss_pred cCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCCccH-----HHHHHHHHhhchHHHHH
Confidence 7542 1 23466654 222333332 1 588999999999987666522 45666666677788877
Q ss_pred HHHHHH
Q 006760 360 LQRMCE 365 (632)
Q Consensus 360 LqR~ce 365 (632)
+--|+.
T Consensus 220 ~~~~~~ 225 (235)
T cd08872 220 FTSYVQ 225 (235)
T ss_pred HHHHHH
Confidence 766654
No 25
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.21 E-value=0.0038 Score=64.36 Aligned_cols=142 Identities=12% Similarity=0.119 Sum_probs=99.1
Q ss_pred CCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHHhCCch---hhhhhcccccccceE
Q 006760 161 EPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFMDCS---KWVELFPTIVSMAKT 237 (632)
Q Consensus 161 eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~lmD~~---~W~~~Fp~IVs~a~t 237 (632)
+.-|.-..+. +.+ ++|.+..+ .-..|++|+. |...+.+|.+.|.|.+ +|.. .++.
T Consensus 54 ~~~W~l~~~k-------~gI-kVytr~~s--~~l~fk~e~~-----vd~s~~~v~dlL~D~~~R~~WD~-------~~~e 111 (235)
T cd08873 54 KSDWTVASST-------TSV-TLYTLEQD--GVLSFCVELK-----VQTCASDAFDLLSDPFKRPEWDP-------HGRS 111 (235)
T ss_pred cCCCEEEEcC-------CCE-EEEEecCC--CceEEEEEEE-----ecCCHHHHHHHHhCcchhhhhhh-------cccE
Confidence 5689765432 122 55544322 1124556654 8889999999999975 5655 7777
Q ss_pred eEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeee-cC-CeEEEEEEecC--CCCC-CCccceeccCCcce
Q 006760 238 IEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQI-EQ-GSWAVVNVSYD--SPQF-SSQCQSHRFPSGCL 312 (632)
Q Consensus 238 ~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql-~~-G~WaVvDvSld--~~~~-~~~~r~rrlPSGcl 312 (632)
.++|..-. ....++|..+..|. -+..|||-++|+-++. ++ +..+|.=.|+. ..++ ..++|.+.+=+|++
T Consensus 112 ~evI~~id-----~d~~iyy~~~p~Pw-Pvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~ 185 (235)
T cd08873 112 CEEVKRVG-----EDDGIYHTTMPSLT-SEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFV 185 (235)
T ss_pred EEEEEEeC-----CCcEEEEEEcCCCC-CCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEE
Confidence 77776432 23356776655555 4789999999999984 44 34777766665 3333 34799999999999
Q ss_pred EEeCCCCceEEEEEEeee
Q 006760 313 IQDLPNGYSKVTWVEHLE 330 (632)
Q Consensus 313 Iq~~~nG~skVtwVEH~e 330 (632)
|++.++|.|+||.+-|++
T Consensus 186 I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 186 IRQDCGTCTEVSYYNETN 203 (235)
T ss_pred EEECCCCcEEEEEEEEcC
Confidence 999999999999999986
No 26
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.67 E-value=0.027 Score=58.33 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=84.2
Q ss_pred cceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccc--cccceeeEEEEeee
Q 006760 202 RDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSP--VVPTREFYVLRYCQ 279 (632)
Q Consensus 202 R~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SP--LVP~Re~~fLRyck 279 (632)
|.-+.|...+.+|.+.|.|.+...+-.+ .+...++|...... . . +|-..- +.+ -+..|||-.++...
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd~----~~~e~~vIe~id~~----~-~-vY~v~~-~p~~~pvs~RDfV~~~s~~ 152 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWDK----HYRSCELVQQVDED----D-A-IYHVTS-PSLSGHGKPQDFVILASRR 152 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhHh----hccEEEEEEecCCC----c-E-EEEEec-CCCCCCCCCCeEEEEEEEE
Confidence 3336889999999999999854333222 56666677654322 1 1 233321 222 58899999998886
Q ss_pred eec-CC-eEEEEEEec--CCCCC-CCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhh
Q 006760 280 QIE-QG-SWAVVNVSY--DSPQF-SSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLY 341 (632)
Q Consensus 280 ql~-~G-~WaVvDvSl--d~~~~-~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~ly 341 (632)
+.+ +| .++|+=.|+ ...++ ..++|.+.+..|++|++.++|.|+||++-|++= .. +|...
T Consensus 153 ~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP--G~-LP~~~ 216 (240)
T cd08913 153 KPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP--GV-LPYIS 216 (240)
T ss_pred eccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC--cc-ccHHH
Confidence 653 44 455555444 33322 347999999999999999999999999999982 34 55443
No 27
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.59 E-value=0.1 Score=52.42 Aligned_cols=173 Identities=14% Similarity=0.219 Sum_probs=100.2
Q ss_pred CCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeee-cCCchhhhhhccCCCCcchhhhccCCCcceEEeeccC
Q 006760 412 NRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWL-PIPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHIAN 490 (632)
Q Consensus 412 ~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wL-Pvpp~~vFdFLRde~~R~eWD~Ls~G~~vqe~~~Ia~ 490 (632)
..++|..... .++|+|..|+..+ +.+...++...+ .+||+.+|++|.|...|.+||..... .+.+.++
T Consensus 21 ~~~~W~~~~~--~~gi~iy~r~~~~-----~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e--~~~ie~~-- 89 (222)
T cd08871 21 STDGWKLKYN--KNNVKVWTKNPEN-----SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE--SFDICQL-- 89 (222)
T ss_pred CCCCcEEEEc--CCCeEEEEeeCCC-----CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce--eEEEEEc--
Confidence 3458997653 4679999988642 333345555666 49999999999999999999976532 2334444
Q ss_pred CCCCCceEEEEe---cccCCCCcEEEEEeeccCCcceEEEE-cccChhhhhhhhcCCCCCCC--cccCCccEEcCCCCCC
Q 006760 491 GSNPGNCISVLR---AINTSQNNMLILQESCIDSSGSLVVY-CPVDLPAINIAMSGEDPSYI--PLLPSGFTISPDGHLD 564 (632)
Q Consensus 491 g~~~gN~VSllr---~~~~~~~~mliLQes~tD~sgS~vVY-APVD~~~m~~vm~G~dss~v--~LLPSGF~IlPDg~~~ 564 (632)
+.++.|.-.. +.--+..+.++++....+. ++++|+ ..++-+.+ ...+.+| ..+.+||.|-|.+
T Consensus 90 --d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~-----P~~~g~VR~~~~~~g~~i~p~~--- 158 (222)
T cd08871 90 --NPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKY-----PPRKGFVRAISLLTGYLIRPTG--- 158 (222)
T ss_pred --CCCCEEEEEEeECCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCC-----CCCCCeEEeEEEccEEEEEECC---
Confidence 3345443333 2223446777777655555 776654 34433211 0111222 2566777777742
Q ss_pred CCCCCCCCCCcCCCCCCCCCCceeEEeeehhhcCCCcccccchhHHHHH-HHhHHHHHHHHHhhC
Q 006760 565 QGDGASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVTTVN-NLIGTTVQQIKAALN 628 (632)
Q Consensus 565 ~~~~~s~s~~~~~~~~~~~~GSlLTvaFQil~~s~p~akl~~esV~tv~-~li~~tvq~Ik~AL~ 628 (632)
.++|.+|.-+|+=... .+..--|..+. ...-.++++++.++.
T Consensus 159 ------------------~~~t~vt~~~~~Dp~G----~IP~~lvN~~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 159 ------------------PKGCTLTYVTQNDPKG----SLPKWVVNKATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred ------------------CCCEEEEEEEecCCCC----CcCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1468888777765543 22222222222 334477888887764
No 28
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.59 E-value=0.02 Score=59.20 Aligned_cols=118 Identities=15% Similarity=0.103 Sum_probs=87.7
Q ss_pred eecceeeEEechhhHHHHhCCch---hhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeeccc-ccccceeeEEE
Q 006760 200 SSRDSGVVIMNGLALVDMFMDCS---KWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLS-PVVPTREFYVL 275 (632)
Q Consensus 200 ASR~~gvV~m~~~~LVe~lmD~~---~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~S-PLVP~Re~~fL 275 (632)
+-|.-..+...+.+|.+.|.|.+ +|.. .+...++|..-...+ . +|...-.|- |+ ..|||-++
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~-------~~~e~~vI~qld~~~-----~-vY~~~~pPw~Pv-k~RD~V~~ 144 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDP-------HFLSCEVIDWVSEDD-----Q-IYHITCPIVNND-KPKDLVVL 144 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHH-------hhceEEEEEEeCCCc-----C-EEEEecCCCCCC-CCceEEEE
Confidence 44444577889999999999985 5655 666677776543222 1 466554443 44 89999998
Q ss_pred Eeeeeec-CCe-EEEEEEecCC-CCC--CCccceeccCCcceEEeCCCCceEEEEEEeeee
Q 006760 276 RYCQQIE-QGS-WAVVNVSYDS-PQF--SSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEI 331 (632)
Q Consensus 276 Ryckql~-~G~-WaVvDvSld~-~~~--~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~ 331 (632)
|=-.+.. +|. ++|.=.|+.. ..| ..++|.+.+=+|++|++.++|.|+||.+-|++=
T Consensus 145 ~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 145 VSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred EEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcCC
Confidence 7766655 885 8888888865 333 246899998899999999999999999999964
No 29
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=96.10 E-value=0.042 Score=55.52 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=43.1
Q ss_pred CCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhccCCCCcchhhhcc
Q 006760 411 SNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLT 477 (632)
Q Consensus 411 s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRde~~R~eWD~Ls 477 (632)
-...+|. +.. ..++|+|.++... |...|.. + .+ -+++||+.|+++|+|...|.+||...
T Consensus 19 ~~~~gW~-l~~-~~~gI~Vy~k~~~--~~~~~~~-g-e~--~v~as~~~v~~ll~D~~~r~~Wd~~~ 77 (205)
T cd08874 19 QATAGWS-YQC-LEKDVVIYYKVFN--GTYHGFL-G-AG--VIKAPLATVWKAVKDPRTRFLYDTMI 77 (205)
T ss_pred hccCCcE-EEe-cCCCEEEEEecCC--CCcceEE-E-EE--EEcCCHHHHHHHHhCcchhhhhHHhh
Confidence 4567894 433 3578999998743 3344444 3 33 34999999999999999999999754
No 30
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=95.95 E-value=0.31 Score=48.47 Aligned_cols=172 Identities=15% Similarity=0.171 Sum_probs=98.9
Q ss_pred CCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhccCCCCcchhhhccCCCcceEEeeccCC
Q 006760 412 NRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHIANG 491 (632)
Q Consensus 412 ~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRde~~R~eWD~Ls~G~~vqe~~~Ia~g 491 (632)
..++|.... ..++|+|.+|+..+ +. .+..-+...-+|.+|+.||+.|.| .|.+||...-. .+.+-+|
T Consensus 17 ~~~~W~~~~--~~~gi~I~~k~~~~-~~---~l~~~K~~~~v~a~~~~v~~~l~d--~r~~Wd~~~~~--~~vie~i--- 83 (197)
T cd08869 17 KSKGWVSVS--SSDHVELAFKKVDD-GH---PLRLWRASTEVEAPPEEVLQRILR--ERHLWDDDLLQ--WKVVETL--- 83 (197)
T ss_pred ccCCceEEe--cCCcEEEEEEeCCC-CC---cEEEEEEEEEeCCCHHHHHHHHHH--HHhccchhhhe--EEEEEEe---
Confidence 467998654 35699999999731 11 233447777889999999999988 68999965422 2333333
Q ss_pred CCCCceEEEEe--ccc-CCCCcEEEEEeeccC-CcceEEEEc-ccChh-hhhhhhcCCCCCC--CcccCCccEEcCCCCC
Q 006760 492 SNPGNCISVLR--AIN-TSQNNMLILQESCID-SSGSLVVYC-PVDLP-AINIAMSGEDPSY--IPLLPSGFTISPDGHL 563 (632)
Q Consensus 492 ~~~gN~VSllr--~~~-~~~~~mliLQes~tD-~sgS~vVYA-PVD~~-~m~~vm~G~dss~--v~LLPSGF~IlPDg~~ 563 (632)
+..+.|--.. ..- .+..++.+++-...| .-|++++.. -|+-+ .+ -+.+ +..+++||.|-|.|.
T Consensus 84 -d~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~-------p~g~VR~~~~~~g~~i~p~~~- 154 (197)
T cd08869 84 -DEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPV-------PLGGVRAVVLASRYLIEPCGS- 154 (197)
T ss_pred -cCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCC-------CCCCEEEEEEeeeEEEEECCC-
Confidence 2233322221 111 233455555444433 335555432 23221 00 0123 356788888888421
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCceeEEeeehhhcCCCcccccchhHHHHHHHhHHHHHHHHHhhCC
Q 006760 564 DQGDGASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVTTVNNLIGTTVQQIKAALNC 629 (632)
Q Consensus 564 ~~~~~~s~s~~~~~~~~~~~~GSlLTvaFQil~~s~p~akl~~esV~tv~~li~~tvq~Ik~AL~~ 629 (632)
++|.+|--.|+=... .+..=-+-..+++++..+++|++.+.|
T Consensus 155 --------------------~~t~vty~~~~Dp~G----~iP~wl~N~~~~~~~~~~~~l~~~~~~ 196 (197)
T cd08869 155 --------------------GKSRVTHICRVDLRG----RSPEWYNKVYGHLCARELLRIRDSFRQ 196 (197)
T ss_pred --------------------CCeEEEEEEEECCCC----CCCceeecchHhHHHHHHHHHHhhccC
Confidence 467777666654432 222222344558888999999998876
No 31
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=95.83 E-value=0.38 Score=48.68 Aligned_cols=172 Identities=16% Similarity=0.209 Sum_probs=104.2
Q ss_pred CCCCccccCCCcccEEEEEecC-CCCCCCCceEEEEeeeeeecCCchhhhhhccCCCCcchhhhccCCCcceEEeeccCC
Q 006760 413 RHRGTTISGLNEVGVRVTLHKS-MDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHIANG 491 (632)
Q Consensus 413 ~~~W~~l~~~~~~dVrv~~rk~-~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRde~~R~eWD~Ls~G~~vqe~~~Ia~g 491 (632)
.++|.... .++++.|.++++ +..|. -.++.--+|.+|+.||+||.|..+|.+||-.... .+.+-+|
T Consensus 21 ~~gWk~~k--~~~~~~v~~k~~~~~~gk------l~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~--~~iie~I--- 87 (204)
T cd08904 21 TSGWKVVK--TSKKITVSWKPSRKYHGN------LYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQV--YKMLQRI--- 87 (204)
T ss_pred ccCCeEEe--cCCceEEEEEEcCCCCce------EEEEEEEecCCHHHHHHHHhccchhhhhcccccc--eeeEEEe---
Confidence 48998773 448899999987 33441 2345556799999999999999999999975433 3444444
Q ss_pred CCCCceEEEEecc----c-CCCCcEEEEEeec-cCCcceEEEEcccChhhhhhhhcCCCCCCC--cccCCccEEcCCCCC
Q 006760 492 SNPGNCISVLRAI----N-TSQNNMLILQESC-IDSSGSLVVYCPVDLPAINIAMSGEDPSYI--PLLPSGFTISPDGHL 563 (632)
Q Consensus 492 ~~~gN~VSllr~~----~-~~~~~mliLQes~-tD~sgS~vVYAPVD~~~m~~vm~G~dss~v--~LLPSGF~IlPDg~~ 563 (632)
+...+|...+.. . -+..+.+.+|-.. .|-..-.+.+.-|+-+.+ ...+.+| -..|+||.|.|-..
T Consensus 88 -d~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~-----Pp~~g~VRa~n~~~G~~i~pl~~- 160 (204)
T cd08904 88 -DSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQC-----PPSSNYIRGYNHPCGYVCSPLPE- 160 (204)
T ss_pred -CCCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCC-----CCCCCcEEEeeeccEEEEEECCC-
Confidence 666677766511 1 2345677776632 233222233444554422 1123444 36899999999311
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCceeEEeeehhhcCCCcccccchhHHHH-H-HHhHHHHHHHHHhh
Q 006760 564 DQGDGASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVTTV-N-NLIGTTVQQIKAAL 627 (632)
Q Consensus 564 ~~~~~~s~s~~~~~~~~~~~~GSlLTvaFQil~~s~p~akl~~esV~tv-~-~li~~tvq~Ik~AL 627 (632)
..++|.||.-+|+=.+. .+..--|..+ . +++ ..+...|.||
T Consensus 161 ------------------~p~~t~l~~~~~~DlkG----~lP~~vv~~~~~~~~~-~f~~~~~~~~ 203 (204)
T cd08904 161 ------------------NPAYSKLVMFVQPELRG----NLSRSVIEKTMPTNLV-NLILDAKDGI 203 (204)
T ss_pred ------------------CCCceEEEEEEEeCCCC----CCCHHHHHHHhHHHHH-HHHHHHHHhc
Confidence 12579999999954443 2333233222 1 444 7777777776
No 32
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.25 E-value=0.046 Score=46.83 Aligned_cols=47 Identities=30% Similarity=0.450 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHH----HHhhhhhhc
Q 006760 9 DNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELD----RVSSIAAKY 76 (632)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~----r~~~~~~k~ 76 (632)
....|+.||++|+.+|..+. -+-..|+.||.+||+|.. |+.++++|+
T Consensus 19 ti~~Lq~e~eeLke~n~~L~---------------------~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELK---------------------EENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45689999999999999998 255679999999999965 677776664
No 33
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=95.15 E-value=0.57 Score=44.38 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=88.6
Q ss_pred CCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhccCCCCcchhhhccCCCcceEEeeccCCCC
Q 006760 414 HRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHIANGSN 493 (632)
Q Consensus 414 ~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRde~~R~eWD~Ls~G~~vqe~~~Ia~g~~ 493 (632)
.+|..+... ++|+|..++..+.+ +...++..-+|.|+..|+++|.|...|.+||...... ..+..+..
T Consensus 15 ~~W~~~~~~--~~v~vy~~~~~~~~-----~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~--~vl~~~~~--- 82 (193)
T cd00177 15 EGWKLVKEK--DGVKIYTKPYEDSG-----LKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEF--EVIEEIDE--- 82 (193)
T ss_pred CCeEEEEEC--CcEEEEEecCCCCC-----ceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEE--EEEEEeCC---
Confidence 589887543 48999888774332 2355566677999999999999999999999543222 33333322
Q ss_pred CCceEEEEe--cc-cCCCCcEEEEEeeccCC-cceEEEEcccChhhhhhhhcCCCCCCCc--ccCCccEEcCCCCCCCCC
Q 006760 494 PGNCISVLR--AI-NTSQNNMLILQESCIDS-SGSLVVYCPVDLPAINIAMSGEDPSYIP--LLPSGFTISPDGHLDQGD 567 (632)
Q Consensus 494 ~gN~VSllr--~~-~~~~~~mliLQes~tD~-sgS~vVYAPVD~~~m~~vm~G~dss~v~--LLPSGF~IlPDg~~~~~~ 567 (632)
+..|-... .. -.+..++++++....+. -.-+++..++|.+.. ...+++|- ++++||.|-|.+
T Consensus 83 -~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~-----p~~~~~vR~~~~~~~~~i~~~~------ 150 (193)
T cd00177 83 -HTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSH-----PKEKGYVRAEIKLSGWIIEPLD------ 150 (193)
T ss_pred -CeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCC-----CCCCCcEEEEEEccEEEEEECC------
Confidence 23333322 11 13446788888766665 345666667776511 11123333 568888888741
Q ss_pred CCCCCCCcCCCCCCCCCCceeEEeeehhhc
Q 006760 568 GASTSSNVHGNMGSRSSGSLISVAFQILVS 597 (632)
Q Consensus 568 ~~s~s~~~~~~~~~~~~GSlLTvaFQil~~ 597 (632)
.++|.+|.-+|+=..
T Consensus 151 ---------------~~~~~vt~~~~~D~~ 165 (193)
T cd00177 151 ---------------PGKTKVTYVLQVDPK 165 (193)
T ss_pred ---------------CCCEEEEEEEeeCCC
Confidence 246777777776544
No 34
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=94.80 E-value=1.5 Score=44.79 Aligned_cols=170 Identities=15% Similarity=0.191 Sum_probs=100.4
Q ss_pred CCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeec-CCchhhhhhccCCCCcchhhh-ccCCCcceEEeec
Q 006760 411 SNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLP-IPPQNVFNFFKDERTRPQWDV-LTNGNAVQEVAHI 488 (632)
Q Consensus 411 s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLP-vpp~~vFdFLRde~~R~eWD~-Ls~G~~vqe~~~I 488 (632)
....+|.... ..++|.|.++|..+ |.|.-++.| |+=+| +|.+.|+|.|+| |..||. |-.... |..|
T Consensus 24 ek~kgW~~~~--~~~~vev~~kk~~d-~~~l~lwk~---s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~---Ie~L 91 (205)
T cd08907 24 ERFKGWHSAP--GPDNTELACKKVGD-GHPLRLWKV---STEVEAPPSVVLQRVLRE---RHLWDEDLLHSQV---IEAL 91 (205)
T ss_pred hccCCceeec--CCCCcEEEEEeCCC-CCceEEEEE---EEEecCCCHHHHHHHhhc---hhhhhHHHHhhhh---heee
Confidence 4556898764 35789999999743 556555544 34456 899999999999 999995 333322 2233
Q ss_pred cCCCCCCceEEEEe----cccCCCCcEEEEEeec-cC-CcceEEEEcc-cChhhhhhhhcCCCCCCCcccCCccEEcCCC
Q 006760 489 ANGSNPGNCISVLR----AINTSQNNMLILQESC-ID-SSGSLVVYCP-VDLPAINIAMSGEDPSYIPLLPSGFTISPDG 561 (632)
Q Consensus 489 a~g~~~gN~VSllr----~~~~~~~~mliLQes~-tD-~sgS~vVYAP-VD~~~m~~vm~G~dss~v~LLPSGF~IlPDg 561 (632)
++.|- |.+ ...+-.+.-+++|-++ +| ..|++++.+- |+=+.-. ..|| --...|=|||-|=|.|
T Consensus 92 ----d~n~d--I~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~p--p~~g--VRa~~l~sgYlIep~g 161 (205)
T cd08907 92 ----ENNTE--VYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQ--LEAG--VRAVLLTSQYLIEPCG 161 (205)
T ss_pred ----cCCCE--EEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCC--CCCC--eEEEEEeccEEEEECC
Confidence 33332 333 2223345567777766 44 5577666542 2222111 1222 1123455777777743
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCceeEEeeehhhcCCCcccccchhHHHH-HHHhHHHHHHHHHhhC
Q 006760 562 HLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVTTV-NNLIGTTVQQIKAALN 628 (632)
Q Consensus 562 ~~~~~~~~s~s~~~~~~~~~~~~GSlLTvaFQil~~s~p~akl~~esV~tv-~~li~~tvq~Ik~AL~ 628 (632)
.|+|-||==.|+=... ..++=+..+ ..|++.-+.||+..+.
T Consensus 162 ---------------------~g~s~ltyi~rvD~rG-----~~P~Wynk~~g~~~a~~l~~ir~sF~ 203 (205)
T cd08907 162 ---------------------MGRSRLTHICRADLRG-----RSPDWYNKVFGHLCAMEVARIRDSFP 203 (205)
T ss_pred ---------------------CCCeEEEEEEEeCCCC-----CCcHHHHHhHHHHHHHHHHHHHhhcc
Confidence 2578888666665554 444555555 3677788999998764
No 35
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.50 E-value=2.3 Score=42.51 Aligned_cols=115 Identities=14% Similarity=0.190 Sum_probs=77.6
Q ss_pred HHHHHhhhccCCCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhccCCCCcchhhhccCC
Q 006760 400 MVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLTNG 479 (632)
Q Consensus 400 M~~~F~~~v~~s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRde~~R~eWD~Ls~G 479 (632)
++..|...+.. .++|..... .++|+|.+|+..+ +.+++.+.-..++.|+..+.++|+|-..+.+|+-.+..
T Consensus 10 ~~~~~~~~l~~--~~~W~~~~~--~~~i~v~~r~~~~-----~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~ 80 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQKE--SEGIRVYYKFEPD-----GSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIR 80 (215)
T ss_pred HHHHHHhcccC--CCCcEEecc--CCCeEEEEEeCCC-----CCEEEEEEEEEecCChhHeEEEEehhhhHhhhccccee
Confidence 44556666655 678997753 4799999998632 34889999999999999999999999999999976422
Q ss_pred CcceEEeeccCCCCCCceEEEEe---cccCCCCcEEEEEeec--cCCcceEEEEc
Q 006760 480 NAVQEVAHIANGSNPGNCISVLR---AINTSQNNMLILQESC--IDSSGSLVVYC 529 (632)
Q Consensus 480 ~~vqe~~~Ia~g~~~gN~VSllr---~~~~~~~~mliLQes~--tD~sgS~vVYA 529 (632)
.+.+..+ +..+.|..++ +.--+..++++....+ .|..|+++|+.
T Consensus 81 --~~~l~~~----~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~ 129 (215)
T cd08877 81 --SKKVKQL----GRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILL 129 (215)
T ss_pred --eEEEeec----CCceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEEEEE
Confidence 2333333 3446677666 2212345565543333 33567776655
No 36
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=94.37 E-value=2.2 Score=42.53 Aligned_cols=174 Identities=14% Similarity=0.121 Sum_probs=94.3
Q ss_pred CCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhc-cCCCCcchhhhccCCCcceEEeeccCC
Q 006760 413 RHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFF-KDERTRPQWDVLTNGNAVQEVAHIANG 491 (632)
Q Consensus 413 ~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFL-Rde~~R~eWD~Ls~G~~vqe~~~Ia~g 491 (632)
..+|..... ..++|.|.+|+..++ |-+ .++...+|+||..||++| .|...|.+||..... .+.+-++
T Consensus 23 ~~~W~l~~~-~~~~i~i~~r~~~~~----~~~--~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~--~~~i~~~--- 90 (208)
T cd08868 23 DPGWKLEKN-TTWGDVVYSRNVPGV----GKV--FRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLE--CKIIQVI--- 90 (208)
T ss_pred CCCceEEEe-cCCCCEEEEEEcCCC----ceE--EEEEEEEcCCHHHHHHHHHcCccccceecCcccc--eEEEEEe---
Confidence 348986643 334899999986332 333 444556799999999854 588999999977644 3444444
Q ss_pred CCCCceEEEEe--cc--c-CCCCcEEEEEeeccCCcceEEE-EcccChhhhhhhhcCCCCCC--CcccCCccEEcCCCCC
Q 006760 492 SNPGNCISVLR--AI--N-TSQNNMLILQESCIDSSGSLVV-YCPVDLPAINIAMSGEDPSY--IPLLPSGFTISPDGHL 563 (632)
Q Consensus 492 ~~~gN~VSllr--~~--~-~~~~~mliLQes~tD~sgS~vV-YAPVD~~~m~~vm~G~dss~--v~LLPSGF~IlPDg~~ 563 (632)
+....|--.. .. . -+..+...++-..-+. +.++| ...|+-+.+ ...+.+ +..+++||.|-|.+.+
T Consensus 91 -d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~-----P~~~g~VR~~~~~~~~~i~p~~~~ 163 (208)
T cd08868 91 -DDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAM-----PPTKNYVRGENGPGCWILRPLPNN 163 (208)
T ss_pred -cCCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCCCC-----CCCCCeEEEeccccEEEEEECCCC
Confidence 2233333222 11 1 1345666666543333 44544 333443311 112333 3568889999885221
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCceeEEeeehhhc-CCCcccccchhHHHHHHHhHHHHHHHHHhhC
Q 006760 564 DQGDGASTSSNVHGNMGSRSSGSLISVAFQILVS-SLPSAKLNMESVTTVNNLIGTTVQQIKAALN 628 (632)
Q Consensus 564 ~~~~~~s~s~~~~~~~~~~~~GSlLTvaFQil~~-s~p~akl~~esV~tv~~li~~tvq~Ik~AL~ 628 (632)
.++|.+|.-+++=.. ..|.--.|.-+ ...+-.++..+|.++.
T Consensus 164 -------------------~~~t~v~~~~~~Dp~G~iP~~lvN~~~----~~~~~~~~~~Lr~~~~ 206 (208)
T cd08868 164 -------------------PNKCNFTWLLNTDLKGWLPQYLVDQAL----ASVLLDFMKHLRKRIA 206 (208)
T ss_pred -------------------CCceEEEEEEEECCCCCCcceeeehhh----HHHHHHHHHHHHHHHh
Confidence 146777755544333 23332212211 1333477777777664
No 37
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=94.15 E-value=0.054 Score=57.25 Aligned_cols=40 Identities=35% Similarity=0.390 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHH
Q 006760 11 CGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELD 67 (632)
Q Consensus 11 ~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~ 67 (632)
..|++||++||.||..+++++.. ..|.|+.||+|||+.|+
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~-----------------~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEI-----------------LTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhc
Confidence 35889999999999999777742 23449999999999886
No 38
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=93.46 E-value=7.2 Score=38.79 Aligned_cols=144 Identities=16% Similarity=0.172 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhccC--CCCc
Q 006760 393 MMKLAQRMVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKD--ERTR 470 (632)
Q Consensus 393 llkLAqRM~~~F~~~v~~s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRd--e~~R 470 (632)
+=++.|.|..-|.. .++|.... ..++|+|.+++..+. .+- ..++..-+|.+|+.||++|.| +..|
T Consensus 7 ~~~~~~~~~~~~~~------~~~W~~~~--~~~~i~v~~~~~~~~---~~~--~~k~~~~i~~~~~~v~~~l~d~~~~~r 73 (206)
T cd08867 7 AEKLANEALQYIND------TDGWKVLK--TVKNITVSWKPSTEF---TGH--LYRAEGIVDALPEKVIDVIIPPCGGLR 73 (206)
T ss_pred HHHHHHHHHHHhcC------cCCcEEEE--cCCCcEEEEecCCCC---CCE--EEEEEEEEcCCHHHHHHHHHhcCcccc
Confidence 33455566555542 27899775 347899999864221 121 246666679999999999999 9999
Q ss_pred chhhhccCCCcceEEeeccCCCCCCceEEEEe-cc---c-CCCCcEEEEEeeccCCcceEEEE-cccChhhhhhhhcCCC
Q 006760 471 PQWDVLTNGNAVQEVAHIANGSNPGNCISVLR-AI---N-TSQNNMLILQESCIDSSGSLVVY-CPVDLPAINIAMSGED 544 (632)
Q Consensus 471 ~eWD~Ls~G~~vqe~~~Ia~g~~~gN~VSllr-~~---~-~~~~~mliLQes~tD~sgS~vVY-APVD~~~m~~vm~G~d 544 (632)
.+||.... ..+.+.+| ++.+.|-... +. . -+..+...+|-.-...-+++++. .-|+-+.+ ...
T Consensus 74 ~~Wd~~~~--~~~~le~i----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~-----p~~ 142 (206)
T cd08867 74 LKWDKSLK--HYEVLEKI----SEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPER-----PPT 142 (206)
T ss_pred cccccccc--ceEEEEEe----CCCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCC-----CCC
Confidence 99995543 24555565 3344443332 11 1 23456776764322223455444 22333311 112
Q ss_pred CCCC--cccCCccEEcCC
Q 006760 545 PSYI--PLLPSGFTISPD 560 (632)
Q Consensus 545 ss~v--~LLPSGF~IlPD 560 (632)
+.+| ...++||.|-|.
T Consensus 143 ~~~VR~~~~~~g~~i~p~ 160 (206)
T cd08867 143 PGFVRGYNHPCGYFCSPL 160 (206)
T ss_pred CCcEEEEeecCEEEEEEC
Confidence 3333 357888888874
No 39
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=93.45 E-value=3.3 Score=41.63 Aligned_cols=175 Identities=15% Similarity=0.146 Sum_probs=96.4
Q ss_pred CCCCCccccCCCcccEEEEEecC-CCCCCCCceEEEEeeeeeecCCchhhhhhccCC--CCcchhhhccCCCcceEEeec
Q 006760 412 NRHRGTTISGLNEVGVRVTLHKS-MDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDE--RTRPQWDVLTNGNAVQEVAHI 488 (632)
Q Consensus 412 ~~~~W~~l~~~~~~dVrv~~rk~-~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRde--~~R~eWD~Ls~G~~vqe~~~I 488 (632)
..++|.... ..++|+|.+|++ ..+|. . -+.-.-+|++++.+|+||.|. ..|.+||..+.. ++.+-+|
T Consensus 20 ~~~~W~~~~--~~~~i~v~~~~~~~~~~~---~---~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~--~~vle~i 89 (208)
T cd08903 20 DESGWKTCR--RTNEVAVSWRPSAEFAGN---L---YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKD--FEVVEAI 89 (208)
T ss_pred cccCCEEEE--cCCCEEEEeeecCCCCCc---E---EEEEEEecCCHHHHHHHHHhccchhhhhhhhcccc--EEEEEEe
Confidence 567898776 336999999997 44442 2 344455699999999999854 478999976643 2334444
Q ss_pred cCCCCCCceEEEEe-cc---c-CCCCcEEEEEeeccCCcceEEEEc-ccChhhhhhhhcCCCCCCCc--ccCCccEEcCC
Q 006760 489 ANGSNPGNCISVLR-AI---N-TSQNNMLILQESCIDSSGSLVVYC-PVDLPAINIAMSGEDPSYIP--LLPSGFTISPD 560 (632)
Q Consensus 489 a~g~~~gN~VSllr-~~---~-~~~~~mliLQes~tD~sgS~vVYA-PVD~~~m~~vm~G~dss~v~--LLPSGF~IlPD 560 (632)
+....|..++ +- . -+..++.+++-.-.+..|.+++.. -++-+.+ ...+.+|- .-|+|+.+.|=
T Consensus 90 ----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~-----P~~~~~VR~~~~~~g~~~~~~ 160 (208)
T cd08903 90 ----SDDVSVCRTVTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLC-----PPQAGFVRGFNHPCGCFCEPV 160 (208)
T ss_pred ----cCCEEEEEEecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCC-----CCCCCeEEEeeeccEEEEEEC
Confidence 3334443333 11 1 344667776665444556665544 2222110 11233332 34567776661
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCCCCceeEEeeehhhcCCCcccccchhHHHHH-HHhHHHHHHHHHhhC
Q 006760 561 GHLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVTTVN-NLIGTTVQQIKAALN 628 (632)
Q Consensus 561 g~~~~~~~~s~s~~~~~~~~~~~~GSlLTvaFQil~~s~p~akl~~esV~tv~-~li~~tvq~Ik~AL~ 628 (632)
.+ ..++|.+|.=+|+=-. -.+...-|.... ..+-.+.+.+|.+++
T Consensus 161 ----~~---------------~~~~t~v~~~~~~Dpk----G~iP~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 161 ----PG---------------EPDKTQLVSFFQTDLS----GYLPQTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred ----CC---------------CCCceEEEEEEEeccC----CCcCHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 00 1245767666555433 333333333322 334477777777764
No 40
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=93.35 E-value=5.6 Score=40.17 Aligned_cols=145 Identities=10% Similarity=0.105 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhhhccCCCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhh-hccCCCCcchh
Q 006760 395 KLAQRMVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFN-FFKDERTRPQW 473 (632)
Q Consensus 395 kLAqRM~~~F~~~v~~s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFd-FLRde~~R~eW 473 (632)
+.++-=++.|..-+.. ..+|..-. ...++|+|-+++..+.| .+-+.-.-++.||+.||+ .|.|...|.+|
T Consensus 8 ~~~~~~~~~~~~~l~~--~~~W~l~~-~~~~gi~V~s~~~~~~~------~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W 78 (209)
T cd08906 8 RQGKEALAVVEQILAQ--EENWKFEK-NNDNGDTVYTLEVPFHG------KTFILKAFMQCPAELVYQEVILQPEKMVLW 78 (209)
T ss_pred HHHHHHHHHHHHHhhc--ccCCEEEE-ecCCCCEEEEeccCCCC------cEEEEEEEEcCCHHHHHHHHHhChhhcccc
Confidence 3344444444444433 35798543 22578999997764332 233667777999999985 78999999999
Q ss_pred hhccCCCcceEEeeccCCCCCCceEEE-Ee-cc--c-CCCCcEEEEEeeccCCcceEEEEcccChhhhhhhhcCCCCCCC
Q 006760 474 DVLTNGNAVQEVAHIANGSNPGNCISV-LR-AI--N-TSQNNMLILQESCIDSSGSLVVYCPVDLPAINIAMSGEDPSYI 548 (632)
Q Consensus 474 D~Ls~G~~vqe~~~Ia~g~~~gN~VSl-lr-~~--~-~~~~~mliLQes~tD~sgS~vVYAPVD~~~m~~vm~G~dss~v 548 (632)
|.-.. .++.+.+| ++.+.|.= +. +. . -+..++.+++-..-+..+...+...++.+.+ ...+.+|
T Consensus 79 ~~~~~--~~~vi~~~----~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~sv~~~~~-----P~~~~~V 147 (209)
T cd08906 79 NKTVS--ACQVLQRV----DDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSAGISTTHSHK-----PPLSKYV 147 (209)
T ss_pred Cccch--hhhheeec----cCCcEEEEEEccccccCCCCCCceEEEEEEEecCCcEEEEEEEEecCCC-----CCCCCeE
Confidence 95432 23344444 33344331 11 11 1 2456777776655554454444444444421 2234454
Q ss_pred --cccCCccEEcC
Q 006760 549 --PLLPSGFTISP 559 (632)
Q Consensus 549 --~LLPSGF~IlP 559 (632)
...++||.|.|
T Consensus 148 R~~~~~~G~~i~~ 160 (209)
T cd08906 148 RGENGPGGFVVLK 160 (209)
T ss_pred EEeeeccEEEEEE
Confidence 35899999998
No 41
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=93.35 E-value=1.3 Score=43.39 Aligned_cols=132 Identities=22% Similarity=0.197 Sum_probs=79.3
Q ss_pred CCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchh-hhhhccCCCCcchhhhccCCCcceEEeeccCC
Q 006760 413 RHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQN-VFNFFKDERTRPQWDVLTNGNAVQEVAHIANG 491 (632)
Q Consensus 413 ~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~-vFdFLRde~~R~eWD~Ls~G~~vqe~~~Ia~g 491 (632)
.++|...... .+++.+..|...+ | ..+-..+....++.+++. +.++|.|.+.|.+||..... ++.+-.+.
T Consensus 18 ~~~W~~~~~~-~~~~~~~~~~~~~-~---~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~--~~~ie~~~-- 88 (206)
T smart00234 18 EPGWVLSSEN-ENGDEVRSILSPG-R---SPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK--AETLEVID-- 88 (206)
T ss_pred CCccEEcccc-CCcceEEEEccCC-C---CceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc--EEEEEEEC--
Confidence 4679877642 3444444444321 1 135677888889988886 66899999999999976533 33444442
Q ss_pred CCCCceEEEEe---cc-cCCCCcEEEEEeeccCCcceEEEEc-ccChhhhhhhhcCCCCCCC--cccCCccEEcCC
Q 006760 492 SNPGNCISVLR---AI-NTSQNNMLILQESCIDSSGSLVVYC-PVDLPAINIAMSGEDPSYI--PLLPSGFTISPD 560 (632)
Q Consensus 492 ~~~gN~VSllr---~~-~~~~~~mliLQes~tD~sgS~vVYA-PVD~~~m~~vm~G~dss~v--~LLPSGF~IlPD 560 (632)
.++.|-... .. --+..+..++.....|..++++|-. -++-+.. ...+.+| .++++||.|-|.
T Consensus 89 --~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-----p~~~~~VR~~~~~~~~~i~p~ 157 (206)
T smart00234 89 --NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-----PPTSGYVRAENLPSGLLIEPL 157 (206)
T ss_pred --CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-----CCCCCceEEEEeceEEEEEEC
Confidence 234433332 22 1234677777776666667766544 5554421 1123333 579999999995
No 42
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=93.03 E-value=0.15 Score=54.71 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 006760 8 ADNCGLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal 31 (632)
.||..||+||++||+||..||..+
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eV 55 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEV 55 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHH
Confidence 578999999999999999998766
No 43
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=92.90 E-value=2.5 Score=41.17 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=46.4
Q ss_pred CCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhccCCCCcchhhhcc
Q 006760 411 SNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLT 477 (632)
Q Consensus 411 s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRde~~R~eWD~Ls 477 (632)
|++.+|..... .++|+|..++..+ +.+..-.++..++.||+.+|+++.|..+|.+||--.
T Consensus 14 ~~~~~W~~~~~--~~~v~v~~~~~~~-----~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~ 73 (195)
T cd08876 14 APDGDWQLVKD--KDGIKVYTRDVEG-----SPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNC 73 (195)
T ss_pred CCCCCCEEEec--CCCeEEEEEECCC-----CCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhc
Confidence 44555987763 4799999998642 223455777779999999999999999999999643
No 44
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=91.70 E-value=6.1 Score=39.67 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=43.0
Q ss_pred CCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeee-cCCchhhhhhccCCCCcchhhhcc
Q 006760 412 NRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWL-PIPPQNVFNFFKDERTRPQWDVLT 477 (632)
Q Consensus 412 ~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wL-Pvpp~~vFdFLRde~~R~eWD~Ls 477 (632)
-..+|..... .++|+|-.|...+.| +. --++...+ ++|++.+|++|.|...|.+||...
T Consensus 19 ~~~~W~l~~~--~~~i~Vy~r~~~~s~----~~-~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~ 78 (207)
T cd08911 19 EPDGWEPFIE--KKDMLVWRREHPGTG----LY-EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA 78 (207)
T ss_pred cCCCcEEEEE--cCceEEEEeccCCCC----cE-EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh
Confidence 3456987753 467999888764332 22 34454445 899999999999999999999765
No 45
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=91.34 E-value=0.28 Score=51.04 Aligned_cols=40 Identities=33% Similarity=0.488 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHH
Q 006760 10 NCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELD 67 (632)
Q Consensus 10 N~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~ 67 (632)
...|++||++|++||..++..+ .+.+.|+.||.+||+-++
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~------------------~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 71 LFDLREENEELKKELLELESRL------------------QELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhc
Confidence 4567778888888887777766 234568889999988775
No 46
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=90.63 E-value=2.7 Score=42.06 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=61.9
Q ss_pred CCCCccccCCCc--ccEEEEEecCCCCCCCCceEEEEeeeeee-cCCchhhhhhccCCCCcchhhhccCCCcceEEeecc
Q 006760 413 RHRGTTISGLNE--VGVRVTLHKSMDPGQPNGVVLNAATTFWL-PIPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHIA 489 (632)
Q Consensus 413 ~~~W~~l~~~~~--~dVrv~~rk~~~~G~p~G~VLsA~tS~wL-Pvpp~~vFdFLRde~~R~eWD~Ls~G~~vqe~~~Ia 489 (632)
+++|.......+ .+|+|-.|+..+.| +.--++...+ .+||+.|+|+|.|...|.+||... .|.--|.
T Consensus 21 ~~~W~~~~~k~~~~~~i~vy~r~~~~s~-----~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~-----~~~~~le 90 (209)
T cd08870 21 GQAWQQVMDKSTPDMSYQAWRRKPKGTG-----LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETV-----IEHETLE 90 (209)
T ss_pred CCcceEhhhccCCCceEEEEecccCCCC-----ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhe-----eeEEEEE
Confidence 368998764332 23777666653222 2235556677 589999999999999999999765 2322232
Q ss_pred CCCCCCceEEEEe---cccCCCCcEEEEEeeccCCcceEEEEc
Q 006760 490 NGSNPGNCISVLR---AINTSQNNMLILQESCIDSSGSLVVYC 529 (632)
Q Consensus 490 ~g~~~gN~VSllr---~~~~~~~~mliLQes~tD~sgS~vVYA 529 (632)
+..+.++.|--.. +.--+..+..+.+..+.|.-+++++..
T Consensus 91 ~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~ 133 (209)
T cd08870 91 EDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVT 133 (209)
T ss_pred ecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEE
Confidence 2222234322222 221234456555556666566665554
No 47
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=90.23 E-value=11 Score=38.46 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=42.0
Q ss_pred CCCCCccccCCCcccEEEEEecCCC-CCCCCceEEEEeeeeeecCCchhhhhhccCCCCcchhhhccC
Q 006760 412 NRHRGTTISGLNEVGVRVTLHKSMD-PGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLTN 478 (632)
Q Consensus 412 ~~~~W~~l~~~~~~dVrv~~rk~~~-~G~p~G~VLsA~tS~wLPvpp~~vFdFLRde~~R~eWD~Ls~ 478 (632)
...+|.....+ +|+.|..+++.+ .|- |- .+---+|.-|+.|+||+.+..+|.+||-...
T Consensus 21 ~~~~Wkl~k~~--~~~~v~~k~~~ef~gk----l~--R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~ 80 (202)
T cd08902 21 LEEEWRVAKKS--KDVTVWRKPSEEFGGY----LY--KAQGVVEDVYNRIVDHIRPGPYRLDWDSLMT 80 (202)
T ss_pred cccCcEEEEeC--CCEEEEEecCCcCCCc----eE--EEEEEecCCHHHHHHHHhcccchhcccchhh
Confidence 56789876544 889999998843 331 11 1111127888999999999999999997643
No 48
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.20 E-value=0.4 Score=41.83 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=46.0
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHH----HHhhhhhhc
Q 006760 2 KAQHERADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELD----RVSSIAAKY 76 (632)
Q Consensus 2 K~q~eR~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~----r~~~~~~k~ 76 (632)
|.|+-=..-.+|+-|.|.|+.+|..+.+....+.- ....|+.||.+||+|.. |++++++|.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~--------------~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH--------------QREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566788999999999999999988754321 12349999999999975 888877764
No 49
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=90.19 E-value=7.3 Score=37.02 Aligned_cols=139 Identities=16% Similarity=0.206 Sum_probs=74.7
Q ss_pred ceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeec
Q 006760 203 DSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIE 282 (632)
Q Consensus 203 ~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~ 282 (632)
.+-+|.-.+..+-+++-|..+|-++||.++ ..+|++.|..| . .....++...+ ..+.-|.=|.+ +.
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~~----~~~~l~~~~~~----~--~~r~~i~~~~~--g~~~~w~s~~~--~~ 70 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSEYA----EAEVLEEDGDT----V--RFRLTMHPDAN--GTVWSWVSERT--LD 70 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccceE----EEEEEEecCCe----E--EEEEEEEeccC--CEEEEEEEEEE--ec
Confidence 455677789999999999999999999665 46677753322 1 11122233332 12222323433 23
Q ss_pred CCeEEEEEEecCCCCCCCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCcc-chhhhhhhcccchhhHHHHHHHHH
Q 006760 283 QGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPI-HRLYQDLIQSGMAFGADRWLATLQ 361 (632)
Q Consensus 283 ~G~WaVvDvSld~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~v-h~lyrpl~~Sg~afGA~RWlatLq 361 (632)
...|-|.=...... + ...+=-...+++.++| |+|++..+.+...-.+. ..+.+..+.. .-..=++.|.
T Consensus 71 ~~~~~i~~~~~~~~---p---~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~Lk 139 (146)
T cd08860 71 PVNRTVRARRVETG---P---FAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGAPVDDAAMTDRLNT----NTRAQMARIK 139 (146)
T ss_pred CCCcEEEEEEecCC---C---cceeeeeEEEEECCCC-EEEEEEEEEEECCCCccchHHHHHHHhc----ccHHHHHHHH
Confidence 33443331122111 1 1122222346888887 99999999987632212 2233333332 3345567777
Q ss_pred HHHHH
Q 006760 362 RMCER 366 (632)
Q Consensus 362 R~cer 366 (632)
+++|+
T Consensus 140 ~~aE~ 144 (146)
T cd08860 140 KKIEA 144 (146)
T ss_pred HHhhh
Confidence 77765
No 50
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=89.79 E-value=7 Score=40.59 Aligned_cols=182 Identities=13% Similarity=0.135 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCccccCCCc-----cc-EEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhccC
Q 006760 393 MMKLAQRMVSSFCTSISTSNRHRGTTISGLNE-----VG-VRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKD 466 (632)
Q Consensus 393 llkLAqRM~~~F~~~v~~s~~~~W~~l~~~~~-----~d-Vrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRd 466 (632)
++.||..-+.-|- .+.....--|.+..+.+. |. .|++.+.. .+..+...+..+-++-..++.|..|.++|.|
T Consensus 4 ~~~lA~~am~Ell-~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~-~~~~~~~~~eASR~~glV~m~~~~lVe~lmD 81 (229)
T cd08875 4 LLELAEEAMDELL-KLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHG-GSKPGGFTTEASRACGLVMMNAIKLVEILMD 81 (229)
T ss_pred HHHHHHHHHHHHH-HHhccCCCCceecCCCCccccCHHHHhhcccCcC-CCCCCCCeEEEEeeeEEEecCHHHHHHHHhC
Confidence 7899999999998 455556778998766532 22 22222221 1111234567778888889999999999999
Q ss_pred CCCcch-hhhccCCCcceEEeeccCCC--CCCceEEEEec----cc--CCCCcEEEEEeeccCCcceEEEEc-ccChhhh
Q 006760 467 ERTRPQ-WDVLTNGNAVQEVAHIANGS--NPGNCISVLRA----IN--TSQNNMLILQESCIDSSGSLVVYC-PVDLPAI 536 (632)
Q Consensus 467 e~~R~e-WD~Ls~G~~vqe~~~Ia~g~--~~gN~VSllr~----~~--~~~~~mliLQes~tD~sgS~vVYA-PVD~~~m 536 (632)
..++.+ .+-...-. ..+.-|.+|. ..+..+.|+.. .. ..-.+..+|.-+.--.-|+.+|-- .+|-.
T Consensus 82 ~~kW~~~Fp~iv~~a--~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~-- 157 (229)
T cd08875 82 VNKWSELFPGIVSKA--KTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGV-- 157 (229)
T ss_pred hhhhhhhhhhhccee--eEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccc--
Confidence 555555 33233222 2222233343 45667888771 11 123578888887666778776633 33321
Q ss_pred hhhhcCCCCC---CCcccCCccEEcCCCCCCCCCCCCCCCCcCCCCCCCCCCceeEEeeehhhcCCCcccc
Q 006760 537 NIAMSGEDPS---YIPLLPSGFTISPDGHLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKL 604 (632)
Q Consensus 537 ~~vm~G~dss---~v~LLPSGF~IlPDg~~~~~~~~s~s~~~~~~~~~~~~GSlLTvaFQil~~s~p~akl 604 (632)
+ +...+. .--.+||||-|=|- .+|+|-+|.-=++-++..|.-.+
T Consensus 158 ~---~~p~~~~~~r~~~~PSGcLIq~~---------------------~nG~SkVtwVeH~e~d~~~~~~l 204 (229)
T cd08875 158 Q---TAPPPASFVRCRRLPSGCLIQDM---------------------PNGYSKVTWVEHVEVDEKPVHLL 204 (229)
T ss_pred c---cCCCCCCccEEEEecCcEEEEEC---------------------CCCceEEEEEEEEeccCCccccc
Confidence 0 111122 22479999999772 12678888777777766444333
No 51
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=89.40 E-value=8.7 Score=39.07 Aligned_cols=168 Identities=16% Similarity=0.248 Sum_probs=94.3
Q ss_pred CCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhccCCCCcchhhhccCCCcceEEeeccCCCCC
Q 006760 415 RGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHIANGSNP 494 (632)
Q Consensus 415 ~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRde~~R~eWD~Ls~G~~vqe~~~Ia~g~~~ 494 (632)
+|..++ ..+.+.+..+|.+ +|.| +.--+.++=+|.+|..|...|-|+ |.+||.-.-- .+.+..+ ++
T Consensus 28 ~w~~~~--~~~~~el~~~k~~-~gs~---l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e--~~vIe~l----d~ 93 (204)
T cd08908 28 GWVSYS--TSEQAELSYKKVS-EGPP---LRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLD--SKVIEIL----DS 93 (204)
T ss_pred CCcccC--CCCcEEEEEeccC-CCCC---cEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhh--eEeeEec----CC
Confidence 677663 3577899999873 4443 455677777898898888877775 9999965421 2333333 23
Q ss_pred CceEEEEe-c---ccC-CCCcEEEEEeeccC-CcceEEEEcc-cChhhhhhhhcCCCCCCCcccCCccEEcCCCCCCCCC
Q 006760 495 GNCISVLR-A---INT-SQNNMLILQESCID-SSGSLVVYCP-VDLPAINIAMSGEDPSYIPLLPSGFTISPDGHLDQGD 567 (632)
Q Consensus 495 gN~VSllr-~---~~~-~~~~mliLQes~tD-~sgS~vVYAP-VD~~~m~~vm~G~dss~v~LLPSGF~IlPDg~~~~~~ 567 (632)
.+. |.+ . .-+ ...++.+++-..+| .-|++++... |+-+..- .++ --+..+-+|+.|-|.
T Consensus 94 ~~~--I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P--~~~---VR~~~~~~~w~i~P~------- 159 (204)
T cd08908 94 QTE--IYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAP--VAG---VRVNVLLSRYLIEPC------- 159 (204)
T ss_pred Cce--EEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCC--cCc---eEEEEEeeEEEEEEC-------
Confidence 332 333 1 112 23455555444444 3477777665 4443111 000 012223334444442
Q ss_pred CCCCCCCcCCCCCCCCCCceeEEeeehhhcCCCcccccchhHHHHHHHhHHHHHHHHHhhC
Q 006760 568 GASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVTTVNNLIGTTVQQIKAALN 628 (632)
Q Consensus 568 ~~s~s~~~~~~~~~~~~GSlLTvaFQil~~s~p~akl~~esV~tv~~li~~tvq~Ik~AL~ 628 (632)
.+|+|-+|--.|+=.. ..+..=-+-....|++.-+.||+..+.
T Consensus 160 --------------g~g~t~vtyi~~~DPg----G~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 160 --------------GSGKSKLTYMCRIDLR----GHMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred --------------CCCcEEEEEEEEeCCC----CCCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 1267888865555333 333334444556888889999998864
No 52
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=89.16 E-value=3.5 Score=42.88 Aligned_cols=66 Identities=20% Similarity=0.318 Sum_probs=47.6
Q ss_pred CCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhccCCCCcchhhhccCCCcceEEeec
Q 006760 412 NRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHI 488 (632)
Q Consensus 412 ~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRde~~R~eWD~Ls~G~~vqe~~~I 488 (632)
..++|..-. ..++|+|.+|.+ ..+++-..=.-+++|++.|||+|.|...|.|||... ..++.+..|
T Consensus 53 ~~~~W~l~~--~k~gIkVytr~~-------s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~--~e~evI~~i 118 (235)
T cd08873 53 AKSDWTVAS--STTSVTLYTLEQ-------DGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHG--RSCEEVKRV 118 (235)
T ss_pred ccCCCEEEE--cCCCEEEEEecC-------CCceEEEEEEEecCCHHHHHHHHhCcchhhhhhhcc--cEEEEEEEe
Confidence 467887553 357899999873 233444444448999999999999999999999733 345555555
No 53
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=89.07 E-value=5 Score=36.54 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=77.6
Q ss_pred ceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeec
Q 006760 203 DSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIE 282 (632)
Q Consensus 203 ~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~ 282 (632)
.+..|...+..+.+++-|.+.|.+.+|.+.+ .++++.+. ++ ..+++.+..|. -.|++. .|++-. .
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~----~~vl~~~~----~~----~~~~~~~~~~~-~~~~~~-~~~~~~-~ 67 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWCTA----SRVLERDE----DE----LEAELTVGFGG-IRESFT-SRVTLV-P 67 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCccc----cEEEEcCC----CE----EEEEEEEeecc-ccEEEE-EEEEec-C
Confidence 3455666788899999999999999997654 55666332 11 22333333332 244443 343321 2
Q ss_pred CCeEEEEEEecCCCCCCCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHH
Q 006760 283 QGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQR 362 (632)
Q Consensus 283 ~G~WaVvDvSld~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR 362 (632)
+. .+ -=.++++. .+.+=--..+++.++|.|+|+|.-|++..-.- ...|..+++.. -+++.+..+.+
T Consensus 68 ~~-~i-~~~~~~g~-------~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l-~~~l~~~~~~~----~~~~~l~~f~~ 133 (138)
T cd07813 68 PE-SI-EAELVDGP-------FKHLEGEWRFKPLGENACKVEFDLEFEFKSRL-LEALAGLVFDE----VAKKMVDAFEK 133 (138)
T ss_pred CC-EE-EEEecCCC-------hhhceeEEEEEECCCCCEEEEEEEEEEECCHH-HHHHHHHHHHH----HHHHHHHHHHH
Confidence 33 32 11223321 11222245578899999999999999876332 22344444422 26777888887
Q ss_pred HHHH
Q 006760 363 MCER 366 (632)
Q Consensus 363 ~cer 366 (632)
.|++
T Consensus 134 ~~~~ 137 (138)
T cd07813 134 RAKQ 137 (138)
T ss_pred HHhh
Confidence 7775
No 54
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=88.44 E-value=14 Score=37.71 Aligned_cols=170 Identities=16% Similarity=0.209 Sum_probs=91.6
Q ss_pred CCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhccCCCCcchhhhc-cCCCcceEEeeccCCC
Q 006760 414 HRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVL-TNGNAVQEVAHIANGS 492 (632)
Q Consensus 414 ~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRde~~R~eWD~L-s~G~~vqe~~~Ia~g~ 492 (632)
.+|..+. ..+++.+..+|.. +|.|.-++ ++++=+|.||..|+..+-+ .|.+||.- ..+. .+-+|
T Consensus 27 k~w~~~~--~~~~~e~~ykK~~-d~~~lk~~---r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~---~ie~l---- 91 (205)
T cd08909 27 KGWISCS--SSDNTELAYKKVG-DGNPLRLW---KVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWK---VVETL---- 91 (205)
T ss_pred cCCcccC--CcCCeEEEEecCC-CCCceEEE---EEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeE---EEEEe----
Confidence 4677664 3577888888863 34443333 4577789888877665544 69999954 3332 22222
Q ss_pred CCCceEEE--EecccC-CCCcEEEEEeeccC-CcceEEE-EcccChhhhhhhhcCCCCCCCcccCCccEEcCCCCCCCCC
Q 006760 493 NPGNCISV--LRAINT-SQNNMLILQESCID-SSGSLVV-YCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGHLDQGD 567 (632)
Q Consensus 493 ~~gN~VSl--lr~~~~-~~~~mliLQes~tD-~sgS~vV-YAPVD~~~m~~vm~G~dss~v~LLPSGF~IlPDg~~~~~~ 567 (632)
+..+.|=- ++...+ ...+..+++--.+| ..|++++ +..|+-+.-.. .|+. -..++=+||.|-|-|
T Consensus 92 d~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~V--Ra~~~~~gylI~P~~------ 161 (205)
T cd08909 92 DKQTEVYQYVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGV--RAVVLDSQYLIEPCG------ 161 (205)
T ss_pred CCCcEEEEEEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcE--EEEEEcCcEEEEECC------
Confidence 21122211 112112 23455555554445 4676543 33344331111 1222 234566888888832
Q ss_pred CCCCCCCcCCCCCCCCCCceeEEeeehhhcCCCcccccch-hHHHHHHHhHHHHHHHHHhhC
Q 006760 568 GASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNME-SVTTVNNLIGTTVQQIKAALN 628 (632)
Q Consensus 568 ~~s~s~~~~~~~~~~~~GSlLTvaFQil~~s~p~akl~~e-sV~tv~~li~~tvq~Ik~AL~ 628 (632)
+|+|.||---|+=... -.++ -+.....|++.-+.||+..+.
T Consensus 162 ---------------~g~trvt~i~~vDpkG-----~~P~W~~n~~g~~~~~~~~~~r~sf~ 203 (205)
T cd08909 162 ---------------SGKSRLTHICRVDLKG-----HSPEWYNKGFGHLCAAEAARIRNSFQ 203 (205)
T ss_pred ---------------CCCEEEEEEEEecCCC-----CChHHHHHhHHHHHHHHHHHHHhhcc
Confidence 1457666554443333 2233 444556888889999998865
No 55
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=88.28 E-value=8.3 Score=34.62 Aligned_cols=133 Identities=12% Similarity=0.084 Sum_probs=71.0
Q ss_pred eeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecC
Q 006760 204 SGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQ 283 (632)
Q Consensus 204 ~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~ 283 (632)
+-.+...+.++.+.|.|.+.|.+.+|.+.. +++++. |.... +....+ .|+ ..|--...+|..--++
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~----~~~~~~-------~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~ 71 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCES----LEKIGP-------NEYEA-TVKLKV-GPV-KGTFKGKVELSDLDPP 71 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchhh----ccccCC-------CeEEE-EEEEEE-ccE-EEEEEEEEEEEecCCC
Confidence 344667789999999999999999998664 455541 12221 222222 332 2233233455443344
Q ss_pred CeEEEEEEecCCCCCCCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHH
Q 006760 284 GSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRM 363 (632)
Q Consensus 284 G~WaVvDvSld~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~ 363 (632)
..+++....-.. ..+ ...=--+-+++. +|.++|||.-+++... . +..+..++++. .++|.+....+.
T Consensus 72 ~~~~~~~~~~~~---~~~---~~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~-l~~l~~~~~~~----~~~~~~~~~~~~ 138 (144)
T cd05018 72 ESYTITGEGKGG---AGF---VKGTARVTLEPD-GGGTRLTYTADAQVGG-K-LAQLGSRLIDG----AARKLINQFFEN 138 (144)
T ss_pred cEEEEEEEEcCC---Cce---EEEEEEEEEEec-CCcEEEEEEEEEEEcc-C-hhhhCHHHHHH----HHHHHHHHHHHH
Confidence 555444222111 001 111122346777 5679999999999653 3 55555555532 245555444333
No 56
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=87.01 E-value=13 Score=33.16 Aligned_cols=107 Identities=18% Similarity=0.244 Sum_probs=61.3
Q ss_pred ceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeec
Q 006760 203 DSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIE 282 (632)
Q Consensus 203 ~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~ 282 (632)
.+-.|...+.++.+.|.|.+.|.+.+|.+. .++++..+.. |.-...+ +.+- ..+.++.+.++|...-
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~----~~~~~~~~~~----~~~~~~~--~~~~--~~~~~~~~~~~~~~~~- 72 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKVK----SVEVLLRDND----GRPEMVR--IGVG--AYGIKDTYALEYTWDG- 72 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcceE----EEEEeccCCC----CCEEEEE--EEEe--eeeEEEEEEEEEEEcC-
Confidence 455677789999999999999999999844 4556654432 2212222 2221 2244555556665432
Q ss_pred CC--eEEEEEEecCCCCCCCccceeccCCcceEEeCCCCceEEEEEEeeeecC
Q 006760 283 QG--SWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIED 333 (632)
Q Consensus 283 ~G--~WaVvDvSld~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~ 333 (632)
.. .|-..+.. ...... .-.-+++.++ .|+|||.-+++..-
T Consensus 73 ~~~i~~~~~~~~-------~~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 73 AGSVSWTLVEGE-------GNRSQE---GSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred CCcEEEEEeccc-------ceeEEE---EEEEEEECCC-CEEEEEEEEEEecC
Confidence 22 22222211 011111 1255778877 59999999998743
No 57
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=86.69 E-value=11 Score=36.70 Aligned_cols=148 Identities=18% Similarity=0.250 Sum_probs=84.4
Q ss_pred HHHHHHHHHhhhccCCCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhccCCCCcchhhh
Q 006760 396 LAQRMVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDV 475 (632)
Q Consensus 396 LAqRM~~~F~~~v~~s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRde~~R~eWD~ 475 (632)
|+++....|..- .....++|.........++. +++....+ + ..+...++..-++.++..+|..|.|... +||.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~W~~~~~~~~~~~~--~~~~~~~~-~-~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~ 74 (206)
T PF01852_consen 2 LAEELMQEELAL-AQEDEDGWKLYKDKKNGDVY--YKKVSPSD-S-CPIKMFKAEGVVPASPEQVVEDLLDDRE--QWDK 74 (206)
T ss_dssp HHHHHHHHHHHH-HHHTCTTCEEEEEETTTCEE--EEEEECSS-S-TSCEEEEEEEEESSCHHHHHHHHHCGGG--HHST
T ss_pred HHHHHHHHHHHH-hhcCCCCCeEeEccCCCeEE--EEEeCccc-c-ccceEEEEEEEEcCChHHHHHHHHhhHh--hccc
Confidence 555666666633 35667799988733334444 34431111 1 1344677788889888877777777433 9997
Q ss_pred ccCCCcceEEeeccCCCCCCceEEEEe--c-c--cCCCCcEEEEEeeccCCcceEEEE-cccChhhhhhhhcCCCCCCCc
Q 006760 476 LTNGNAVQEVAHIANGSNPGNCISVLR--A-I--NTSQNNMLILQESCIDSSGSLVVY-CPVDLPAINIAMSGEDPSYIP 549 (632)
Q Consensus 476 Ls~G~~vqe~~~Ia~g~~~gN~VSllr--~-~--~~~~~~mliLQes~tD~sgS~vVY-APVD~~~m~~vm~G~dss~v~ 549 (632)
... ..+.+..+. ++..|.... . . --...+..+++-...+.-+.+++. ..||.+..... .+.+|-
T Consensus 75 ~~~--~~~~le~~~----~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~----~~~~VR 144 (206)
T PF01852_consen 75 MCV--EAEVLEQID----EDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN----SKGYVR 144 (206)
T ss_dssp TEE--EEEEEEEEE----TTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-----TTSEE
T ss_pred chh--hheeeeecC----CCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeecccccccc----ccCcce
Confidence 653 234444442 234444433 1 1 122356777777555666665554 57777643322 233443
Q ss_pred --ccCCccEEcCC
Q 006760 550 --LLPSGFTISPD 560 (632)
Q Consensus 550 --LLPSGF~IlPD 560 (632)
+++|||.|-|.
T Consensus 145 ~~~~~s~~~i~~~ 157 (206)
T PF01852_consen 145 AEILISGWVIRPL 157 (206)
T ss_dssp EEEESEEEEEEEE
T ss_pred eeeeeEeEEEEEc
Confidence 89999999994
No 58
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=86.43 E-value=6.3 Score=40.05 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=63.8
Q ss_pred CCeEEEEEEeeecccccccceeeEEEEe-eeeecC-CeEEEEEEecCCCC-C---CCccceeccCCcceEEeCCC---Cc
Q 006760 250 SGSLLLMYEELQVLSPVVPTREFYVLRY-CQQIEQ-GSWAVVNVSYDSPQ-F---SSQCQSHRFPSGCLIQDLPN---GY 320 (632)
Q Consensus 250 ~G~lqLM~aEl~v~SPLVP~Re~~fLRy-ckql~~-G~WaVvDvSld~~~-~---~~~~r~rrlPSGclIq~~~n---G~ 320 (632)
++..++.|.+..+|-| +..|+|..+.. +.+.+. ..++|+..+++... + ..++|.+ -=||-.|+..|. +-
T Consensus 88 ~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y~SgE~~~~~p~~~~~~ 165 (208)
T cd08864 88 GVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-YASVEKISYLPDADGKS 165 (208)
T ss_pred cceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-EEEEEEEEEcCccCCCc
Confidence 3466888899999999 89999999999 666652 67899999987542 2 2357776 779999998875 47
Q ss_pred eEEEEEEeeeecCCCccc
Q 006760 321 SKVTWVEHLEIEDRTPIH 338 (632)
Q Consensus 321 skVtwVEH~e~d~~~~vh 338 (632)
.+|+|+==...|...-||
T Consensus 166 ~~vew~maT~sDpGG~IP 183 (208)
T cd08864 166 NKVEWIMATRSDAGGNIP 183 (208)
T ss_pred CCEEEEEEEeeCCCCcCc
Confidence 899999933444443244
No 59
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=85.58 E-value=6.3 Score=40.68 Aligned_cols=139 Identities=16% Similarity=0.205 Sum_probs=94.8
Q ss_pred EechhhHHHHhCCc---hhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecCC
Q 006760 208 IMNGLALVDMFMDC---SKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQG 284 (632)
Q Consensus 208 ~m~~~~LVe~lmD~---~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~G 284 (632)
.+.|..+-|.|+|. .+|-. .|.+-.|++.... +|+ .++|-+.+.|.|+- .||+-++|---+.++.
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~----~vi~~e~ie~d~~--tg~-----~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k 130 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDD----MVIELETIEEDPV--TGT-----EVVYWVKKFPFPMS-NRDYVYVRRWWESDEK 130 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHH----HhhhheeeeecCC--CCc-----eEEEEEEeCCcccC-CccEEEEEEEEecCCc
Confidence 34688999999995 79988 3444444444332 444 78999999999886 5999999887777777
Q ss_pred eEEEEEEecCCCC--C-CCccceeccCCcceEE-----eCCCC-ceEEEEEEeeeecCCCccchhhhhhhcccchhhHHH
Q 006760 285 SWAVVNVSYDSPQ--F-SSQCQSHRFPSGCLIQ-----DLPNG-YSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADR 355 (632)
Q Consensus 285 ~WaVvDvSld~~~--~-~~~~r~rrlPSGclIq-----~~~nG-~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~R 355 (632)
.-.||-.|+.... + .-.+|..-.=||.+|| +-++| .|-++|.+| +.. .+.+.++.=+.-.|+..
T Consensus 131 ~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~----p~~---~iP~~~v~~~~~~gmp~ 203 (219)
T KOG2761|consen 131 DYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHN----PGG---GIPKWVVKLAVRKGMPG 203 (219)
T ss_pred eEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEEC----CCC---CCcHHHHHHHHHhcChH
Confidence 7888888776432 1 1247788888999999 55665 355566543 333 34556666666666666
Q ss_pred HHHHHHHHHH
Q 006760 356 WLATLQRMCE 365 (632)
Q Consensus 356 WlatLqR~ce 365 (632)
-+..+-.-|.
T Consensus 204 ~vkKm~~a~~ 213 (219)
T KOG2761|consen 204 AVKKMEKALL 213 (219)
T ss_pred HHHHHHHHHH
Confidence 6666555544
No 60
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=85.57 E-value=0.72 Score=50.21 Aligned_cols=38 Identities=21% Similarity=0.160 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHH
Q 006760 12 GLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELD 67 (632)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~ 67 (632)
.|++||++||.||..|++.+. +.+.++.||++|++-++
T Consensus 61 ~L~~EN~~Lk~Ena~L~~~l~------------------~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 61 VLETENFLLKERIALLEERLK------------------SYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhc
Confidence 467777777777777777662 23346688888775554
No 61
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=85.39 E-value=8.5 Score=34.88 Aligned_cols=137 Identities=16% Similarity=0.162 Sum_probs=67.9
Q ss_pred eeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecC
Q 006760 204 SGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQ 283 (632)
Q Consensus 204 ~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~ 283 (632)
+.+|.-.+..+-++|-|.++|-+.+|+ .. ++++..+ + ++. .++. ....+---...++..+++. .+
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~--~~---~~~~~~~--~--~~~--~~~~--~~~~~~g~~~~~~~~~~~~--~~ 68 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT--VH---VERLELD--G--GVE--RLRM--WATAFDGSVHTWTSRRVLD--PE 68 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC--ce---EEEEEEc--C--CEE--EEEE--EEEcCCCcEEEEEEEEEEc--CC
Confidence 456667889999999999999998887 23 3344332 1 222 1221 1111111122222222221 22
Q ss_pred CeEE-EEEEecCCCCCCCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHH
Q 006760 284 GSWA-VVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQR 362 (632)
Q Consensus 284 G~Wa-VvDvSld~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR 362 (632)
+..+ .......+. + ...=.=..+++.++|.|+|||.-+++..... + +.-+++...+.=..+++|+.|.+
T Consensus 69 ~~~i~~~~~~~~~~----~---~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~lk~ 138 (142)
T cd08861 69 GRRIVFRQEEPPPP----V---ASMSGEWRFEPLGGGGTRVTLRHDFTLGIDS--P-EAVPWIRRALDRNSRAELAALRA 138 (142)
T ss_pred CCEEEEEEeeCCCC----h---hhheeEEEEEECCCCcEEEEEEEEEEECCCC--c-hhHHHHHHHHccccHHHHHHHHH
Confidence 3321 222211111 0 1111122357777788999999999977433 1 33333333333334566666666
Q ss_pred HHH
Q 006760 363 MCE 365 (632)
Q Consensus 363 ~ce 365 (632)
++|
T Consensus 139 ~~E 141 (142)
T cd08861 139 AAE 141 (142)
T ss_pred Hhh
Confidence 665
No 62
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=84.50 E-value=19 Score=32.68 Aligned_cols=132 Identities=11% Similarity=0.175 Sum_probs=70.6
Q ss_pred ceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeeccccccccee-eEEEEeeeee
Q 006760 203 DSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTRE-FYVLRYCQQI 281 (632)
Q Consensus 203 ~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re-~~fLRyckql 281 (632)
.+-.|..++..+-+++.|.+.|.+.+|.+. ..+++... + ++. . ++.. .|. +.+++|+..
T Consensus 3 ~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~----~~~~l~~~--~--~~~-~-~~~~---------~~~~~~~~~~~~~- 62 (144)
T cd08866 3 ARVRVPAPPETVWAVLTDYDNLAEFIPNLA----ESRLLERN--G--NRV-V-LEQT---------GKQGILFFKFEAR- 62 (144)
T ss_pred EEEEECCCHHHHHHHHhChhhHHhhCcCce----EEEEEEcC--C--CEE-E-EEEe---------eeEEEEeeeeeEE-
Confidence 456677788899999999999999999754 45566432 1 121 1 1111 111 222233222
Q ss_pred cCCeEEEEEEecCCCCCCCccceec----cC--Cc-ceEEeCCC-CceEEEEEEeeeecCCCccchhhhhhhcccchhhH
Q 006760 282 EQGSWAVVNVSYDSPQFSSQCQSHR----FP--SG-CLIQDLPN-GYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGA 353 (632)
Q Consensus 282 ~~G~WaVvDvSld~~~~~~~~r~rr----lP--SG-clIq~~~n-G~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA 353 (632)
++.++....- .....+++. ++ .| .-+++.++ |.++|+|--|++.... ++ .++++.-+-=+.
T Consensus 63 -----v~~~~~~~~~-~~~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~--~p---~~l~~~~~~~~~ 131 (144)
T cd08866 63 -----VVLELREREE-FPRELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF--AP---VFLVEFVLRQDL 131 (144)
T ss_pred -----EEEEEEEecC-CCceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCCC--CC---HHHHHHHHHHHH
Confidence 1111111000 000011110 01 12 23577887 7899999887776532 33 256655555566
Q ss_pred HHHHHHHHHHHH
Q 006760 354 DRWLATLQRMCE 365 (632)
Q Consensus 354 ~RWlatLqR~ce 365 (632)
.+-+..|.++||
T Consensus 132 ~~~l~~lr~~ae 143 (144)
T cd08866 132 PTNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHHh
Confidence 777788877776
No 63
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=84.37 E-value=28 Score=31.07 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=69.7
Q ss_pred eeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecC
Q 006760 204 SGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQ 283 (632)
Q Consensus 204 ~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~ 283 (632)
+-.|...+..+-++|.|.+.|.+.+|.+. .+++++. .+. ++.+-.|....+++ ..|++. .+.
T Consensus 5 ~i~I~ap~e~V~~~~~D~~~~~~w~~~~~----~~~~~~~------~~~------~~~~~~~~g~~~~~-~~~v~~-~~~ 66 (139)
T cd07817 5 SITVNVPVEEVYDFWRDFENLPRFMSHVE----SVEQLDD------TRS------HWKAKGPAGLSVEW-DAEITE-QVP 66 (139)
T ss_pred EEEeCCCHHHHHHHHhChhhhHHHhhhhc----EEEEcCC------Cce------EEEEecCCCCcEEE-EEEEec-cCC
Confidence 34455678899999999999999999643 3455531 111 12122233344443 335543 344
Q ss_pred CeEEEEEEecCCCCCCCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHH
Q 006760 284 GSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRM 363 (632)
Q Consensus 284 G~WaVvDvSld~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~ 363 (632)
+..+... ..++.. ......+ +++.++|.++||+--|.+..... .-.++-+++....-=..+++|..|.++
T Consensus 67 ~~~i~~~-~~~~~~--~~~~~~~------f~~~~~~~T~vt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~lk~~ 136 (139)
T cd07817 67 NERIAWR-SVEGAD--PNAGSVR------FRPAPGRGTRVTLTIEYEPPGGA-EGAAVAGLLGGEPERQLREDLRRFKQL 136 (139)
T ss_pred CCEEEEE-ECCCCC--CcceEEE------EEECCCCCeEEEEEEEEECCcch-hhhhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4433222 222211 1111122 46777778999999998876433 323334444333222344455555544
Q ss_pred HH
Q 006760 364 CE 365 (632)
Q Consensus 364 ce 365 (632)
.|
T Consensus 137 aE 138 (139)
T cd07817 137 VE 138 (139)
T ss_pred hh
Confidence 43
No 64
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=84.37 E-value=1.2 Score=46.23 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=46.4
Q ss_pred CCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhccCCCCcchhhhcc
Q 006760 411 SNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLT 477 (632)
Q Consensus 411 s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRde~~R~eWD~Ls 477 (632)
...++|..-. ..++|+|-++. | +-+++-..-+-+++|++.+|++|.|...|.+||...
T Consensus 53 a~~~~W~l~~--dkdgIkVytr~----~---s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~ 110 (236)
T cd08914 53 AAKSGWEVTS--TVEKIKIYTLE----E---HDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHF 110 (236)
T ss_pred cccCCCEEEE--ccCCEEEEEec----C---CCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhh
Confidence 4467897553 45789999984 2 125788888888999999999999999999999754
No 65
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=82.64 E-value=1.6 Score=43.83 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=45.3
Q ss_pred CCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeec-CCchhhhhhccCCCCcchhhhcc
Q 006760 411 SNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLP-IPPQNVFNFFKDERTRPQWDVLT 477 (632)
Q Consensus 411 s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLP-vpp~~vFdFLRde~~R~eWD~Ls 477 (632)
-.+.+|..... .++|+|-.|...+. .+.--++...++ ++++.++++|.|...|.|||...
T Consensus 22 ~~~~~W~l~~~--~~~i~Vy~r~~~~s-----~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~ 82 (207)
T cd08910 22 LDGAAWELLVE--SSGISIYRLLDEQS-----GLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYV 82 (207)
T ss_pred CCCCCeEEEEe--cCCeEEEEeccCCC-----CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 44456987754 46899988876322 233566677777 89999999999999999999764
No 66
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=80.83 E-value=3.8 Score=36.53 Aligned_cols=47 Identities=32% Similarity=0.446 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhhh
Q 006760 12 GLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIA 73 (632)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~ 73 (632)
.+-+||+.|+.|...||+.+-+ ..+.=+-.+||-||++|+.|+.++-
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~---------------nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEH---------------NPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh---------------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999889988733 3466678899999999999998864
No 67
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=80.41 E-value=2.4 Score=45.10 Aligned_cols=43 Identities=30% Similarity=0.329 Sum_probs=34.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHH
Q 006760 7 RADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELD 67 (632)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~ 67 (632)
..+...+..||+.||+|+..+.+-. -+.++|+.||.|||+.++
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~~~------------------~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQLL------------------EEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhC
Confidence 3456677888888888888887766 367889999999999987
No 68
>PRK10724 hypothetical protein; Provisional
Probab=80.32 E-value=45 Score=32.34 Aligned_cols=137 Identities=10% Similarity=0.127 Sum_probs=80.4
Q ss_pred cceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeee
Q 006760 202 RDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQI 281 (632)
Q Consensus 202 R~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql 281 (632)
+.+.+|.-.+.++.+.+.|.++|.+.+|.. +..+|+.... ++ +.+++.+--.-+ ++-+.-|+.-+
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~----~~s~vl~~~~----~~----~~a~l~v~~~g~--~~~f~srv~~~- 82 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGC----TGSRVLESTP----GQ----MTAAVDVSKAGI--SKTFTTRNQLT- 82 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCccc----CeEEEEEecC----CE----EEEEEEEeeCCc--cEEEEEEEEec-
Confidence 446788889999999999999999888754 4455666432 22 467776644433 33333333332
Q ss_pred cCCeEEEEEEecCCCCCCCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHH
Q 006760 282 EQGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQ 361 (632)
Q Consensus 282 ~~G~WaVvDvSld~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLq 361 (632)
.++ .+.+ ..+++ + .+.+=.---+++.++|.|+|+.--+.|+.. .||.+++....---|++.+.+..
T Consensus 83 ~~~-~I~~-~~~~G----p---F~~l~g~W~f~p~~~~~t~V~~~l~fef~s-----~l~~~~~~~~~~~~~~~mv~AF~ 148 (158)
T PRK10724 83 SNQ-SILM-QLVDG----P---FKKLIGGWKFTPLSQEACRIEFHLDFEFTN-----KLIELAFGRVFKELASNMVQAFT 148 (158)
T ss_pred CCC-EEEE-EecCC----C---hhhccceEEEEECCCCCEEEEEEEEEEEch-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3333 22333 1 233333344677887789999988888543 33444443333333667776666
Q ss_pred HHHHHH
Q 006760 362 RMCERF 367 (632)
Q Consensus 362 R~cerl 367 (632)
+-|+.+
T Consensus 149 ~Ra~~~ 154 (158)
T PRK10724 149 VRAKEV 154 (158)
T ss_pred HHHHHH
Confidence 656554
No 69
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=78.95 E-value=2.5 Score=43.93 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=42.9
Q ss_pred CCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhccCCCCcchhhhcc
Q 006760 411 SNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLT 477 (632)
Q Consensus 411 s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRde~~R~eWD~Ls 477 (632)
...++|..-.. .++|+|-++... . +++-+.=+-+++|++.||++|.|...|.+||...
T Consensus 56 ~~~~~W~l~~~--~~gI~Vyt~~~s----~---~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~ 113 (240)
T cd08913 56 VAKDNWVLSSE--KNQVRLYTLEED----K---FLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHY 113 (240)
T ss_pred cccCCCEEEEc--cCCEEEEEEeCC----C---ccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhc
Confidence 45667976543 488999996531 1 1233455667999999999999999999999754
No 70
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.88 E-value=1.9 Score=48.82 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=14.7
Q ss_pred hHHHHHHhhhccHHHHHHHhhhhhh
Q 006760 51 DEQKLRMENAQLKEELDRVSSIAAK 75 (632)
Q Consensus 51 eeq~Lr~ENArLk~El~r~~~~~~k 75 (632)
+.++|..|-..|++|..++...+..
T Consensus 110 ~~~~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 110 ETQELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666555433
No 71
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=78.37 E-value=50 Score=34.13 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=47.0
Q ss_pred cCCCCCCCccccCCCcccEEEEEecCCCCCCCCceEE-EEeeeeeec-CCchhhhhhccCCCCcchhhhcc
Q 006760 409 STSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVL-NAATTFWLP-IPPQNVFNFFKDERTRPQWDVLT 477 (632)
Q Consensus 409 ~~s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VL-sA~tS~wLP-vpp~~vFdFLRde~~R~eWD~Ls 477 (632)
-+-..++|..... .++|+|-.|...+.| +++ --++..-++ ++++.++++|.|...|.+||.-.
T Consensus 21 ~~~~~~~W~l~~~--~~gikVy~r~~~~sg----~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~ 85 (235)
T cd08872 21 EDVGADGWQLFAE--EGEMKVYRREVEEDG----VVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTL 85 (235)
T ss_pred ccCCCCCCEEEEe--CCceEEEEEECCCCC----ceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhh
Confidence 3445568987653 468999998875443 332 356666677 99999999999999999999754
No 72
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=78.23 E-value=25 Score=32.21 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=23.7
Q ss_pred ceeeEEechhhHHHHhCCchhhhhhcccc
Q 006760 203 DSGVVIMNGLALVDMFMDCSKWVELFPTI 231 (632)
Q Consensus 203 ~~gvV~m~~~~LVe~lmD~~~W~~~Fp~I 231 (632)
.+..|.-.+..+-+++-|...|.+..|..
T Consensus 6 ~s~~I~ap~e~V~~~i~D~~~~~~W~p~~ 34 (150)
T cd07818 6 RSIVINAPPEEVFPYVNDLKNWPEWSPWE 34 (150)
T ss_pred EEEEEeCCHHHHHHHHhCcccCcccCchh
Confidence 34557788999999999999999977744
No 73
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=77.97 E-value=48 Score=29.14 Aligned_cols=136 Identities=17% Similarity=0.151 Sum_probs=70.9
Q ss_pred eeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecC
Q 006760 204 SGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQ 283 (632)
Q Consensus 204 ~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~ 283 (632)
+..|...+.++-+.|-|.++|.+..|.+. .+++++.+..+ .|+.-.+...+ .+ .+--...|++.--.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~----~~~~~~~~~~~--~g~~~~~~~~~---~g---~~~~~~~~v~~~~p~ 71 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGVV----EVEKITDGPVG--VGTRYHQVRKF---LG---RRIELTYEITEYEPG 71 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCce----EEEEcCCCCCc--CccEEEEEEEe---cC---ceEEEEEEEEEecCC
Confidence 34566678899999999999999999864 56666544322 33332222221 11 111122334332222
Q ss_pred CeEEEEEEecCCCCCCCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHH
Q 006760 284 GSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRM 363 (632)
Q Consensus 284 G~WaVvDvSld~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~ 363 (632)
..+. ... ..+ . ...+ .=.-+++.++| |+|+|-.+++. .. .-.++.+++...+.=+-++++..|.+.
T Consensus 72 ~~~~-~~~-~~~----~-~~~~---~~~~~~~~~~~-t~v~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~l~~lk~~ 137 (140)
T cd08865 72 RRVV-FRG-SSG----P-FPYE---DTYTFEPVGGG-TRVRYTAELEP--GG-FARLLDPLMAPAFRRRARAALENLKAL 137 (140)
T ss_pred cEEE-EEe-cCC----C-cceE---EEEEEEEcCCc-eEEEEEEEEcc--ch-hHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2221 111 111 0 0000 01336667665 99999998886 33 334555565554444456666666665
Q ss_pred HH
Q 006760 364 CE 365 (632)
Q Consensus 364 ce 365 (632)
.|
T Consensus 138 ~e 139 (140)
T cd08865 138 LE 139 (140)
T ss_pred hh
Confidence 54
No 74
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=76.18 E-value=2.3 Score=46.10 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=24.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 006760 6 ERADNCGLRAENDKIRCENIAIREALK 32 (632)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lreal~ 32 (632)
-|.||..||+||++||.|=.+|.+.++
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 489999999999999999999988876
No 75
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=75.79 E-value=4.5 Score=41.88 Aligned_cols=48 Identities=25% Similarity=0.394 Sum_probs=37.1
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhh
Q 006760 4 QHERADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSI 72 (632)
Q Consensus 4 q~eR~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~ 72 (632)
+-.-.||..|+.||+.|.+|-.+.++.++ +|+.||+||.++++++-.-
T Consensus 145 ~E~~~EkeeL~~eleele~e~ee~~erlk---------------------~le~E~s~LeE~~~~l~~e 192 (290)
T COG4026 145 EELQKEKEELLKELEELEAEYEEVQERLK---------------------RLEVENSRLEEMLKKLPGE 192 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhchhH
Confidence 34456788888888888888888888773 4999999999998876543
No 76
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.41 E-value=6.7 Score=33.79 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=42.1
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHH----HHHhhhhhhc
Q 006760 3 AQHERADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEEL----DRVSSIAAKY 76 (632)
Q Consensus 3 ~q~eR~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El----~r~~~~~~k~ 76 (632)
.|+-=..=.+|+-|.|.|+.+|..+.....++- ..-.-|+-||..||+|- +|++++++|+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~~q--------------~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ--------------HQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444456788999999999998876654321 11123899999999995 5888887775
No 77
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=70.86 E-value=74 Score=28.01 Aligned_cols=133 Identities=11% Similarity=0.089 Sum_probs=66.5
Q ss_pred eeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecCC
Q 006760 205 GVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQG 284 (632)
Q Consensus 205 gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~G 284 (632)
..|...+.++-+.|.|.++|.+.+|.+ ..+++...+. ..|+...++.. .. +.+.+ +|.. .+++
T Consensus 7 ~~i~a~~~~V~~~l~d~~~~~~w~~~~----~~~~~~~~~~---~~g~~~~~~~~----~g----~~~~~-~i~~-~~~~ 69 (140)
T cd07821 7 VTIDAPADKVWALLSDFGGLHKWHPAV----ASCELEGGGP---GVGAVRTVTLK----DG----GTVRE-RLLA-LDDA 69 (140)
T ss_pred EEECCCHHHHHHHHhCcCchhhhccCc----ceEEeecCCC---CCCeEEEEEeC----CC----CEEEE-Eehh-cCcc
Confidence 446677889999999999999888853 4556655432 23443222211 00 11110 1111 1121
Q ss_pred eEEEEEEecCCCCCCCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHH
Q 006760 285 SWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMC 364 (632)
Q Consensus 285 ~WaVvDvSld~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~c 364 (632)
.-.|. ..+... . ..+...-.-+-+.+.++|.|+|+|..+.+..... ...+.++.+ -=+-+.-+..|.++|
T Consensus 70 ~~~i~-~~~~~~-~---~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~l~~L~~~~ 139 (140)
T cd07821 70 ERRYS-YRIVEG-P---LPVKNYVATIRVTPEGDGGTRVTWTAEFDPPEGL-TDELARAFL----TGVYRAGLAALKAAL 139 (140)
T ss_pred CCEEE-EEecCC-C---CCcccceEEEEEEECCCCccEEEEEEEEecCCCc-chHHHHHHH----HHHHHHHHHHHHHhh
Confidence 00011 111110 0 0011111235577888878999999998876543 444444443 333444555555554
No 78
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=70.67 E-value=6.4 Score=36.32 Aligned_cols=28 Identities=21% Similarity=0.107 Sum_probs=25.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 006760 5 HERADNCGLRAENDKIRCENIAIREALK 32 (632)
Q Consensus 5 ~eR~eN~~Lr~ENekLr~EN~~lreal~ 32 (632)
.++.||..|++|+.+|+.||.-||+|+.
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999994
No 79
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=70.61 E-value=4.2 Score=43.18 Aligned_cols=16 Identities=31% Similarity=0.162 Sum_probs=12.8
Q ss_pred chhhhhhHHHHHHHHH
Q 006760 5 HERADNCGLRAENDKI 20 (632)
Q Consensus 5 ~eR~eN~~Lr~ENekL 20 (632)
+-++||..||+|+++|
T Consensus 70 ~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 70 NLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3578999999988766
No 80
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.53 E-value=6.2 Score=31.02 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=11.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 006760 8 ADNCGLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal 31 (632)
+||..|++||++|++|=.++++.+
T Consensus 19 ~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 19 AEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555544444443
No 81
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=69.65 E-value=1.3e+02 Score=30.31 Aligned_cols=194 Identities=12% Similarity=0.123 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHHhhhccCCCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhcc-CCCCc
Q 006760 392 SMMKLAQRMVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFK-DERTR 470 (632)
Q Consensus 392 sllkLAqRM~~~F~~~v~~s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLR-de~~R 470 (632)
+-.++++.....|-.-. ....+|.... .+.++++|.++..++.| --.+.-.-+|+|++.||++|. |-..+
T Consensus 5 ~y~~~~~~~~~~~~~~~--~~~~~W~~~~-~~~~gi~v~s~~~~~~~------k~~k~e~~i~~~~~~l~~~l~~d~e~~ 75 (209)
T cd08905 5 SYIKQGEEALQKSLSIL--QDQEGWKTEI-VAENGDKVLSKVVPDIG------KVFRLEVVVDQPLDNLYSELVDRMEQM 75 (209)
T ss_pred HHHHHHHHHHHHHHHHh--ccccCCEEEE-ecCCCCEEEEEEcCCCC------cEEEEEEEecCCHHHHHHHHHhchhhh
Confidence 34455555555555444 2456898663 23567788887654333 233445567999999996666 56999
Q ss_pred chhhhccCCCcceEEeeccCCCCCCceEEEEe--cc--c-CCCCcEEEEEeeccCCcceEEEEcccChhhhhhhhcCCCC
Q 006760 471 PQWDVLTNGNAVQEVAHIANGSNPGNCISVLR--AI--N-TSQNNMLILQESCIDSSGSLVVYCPVDLPAINIAMSGEDP 545 (632)
Q Consensus 471 ~eWD~Ls~G~~vqe~~~Ia~g~~~gN~VSllr--~~--~-~~~~~mliLQes~tD~sgS~vVYAPVD~~~m~~vm~G~ds 545 (632)
.+|+..+.. ++.+.+| ++.++|.-.. +. . -+..++++++-.--+..+..++.--++.+.+ ...+
T Consensus 76 ~~W~~~~~~--~~vl~~i----d~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~~~~~~s~~~~~~-----P~~~ 144 (209)
T cd08905 76 GEWNPNVKE--VKILQRI----GKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTCVLAGMATHFGLM-----PEQK 144 (209)
T ss_pred ceecccchH--HHHHhhc----CCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcEEEEEEeecCCCC-----CCCC
Confidence 999976533 2222222 3334443333 11 1 2345677766533332222222222232211 1112
Q ss_pred CCC--cccCCccEEcCCCCCCCCCCCCCCCCcCCCCCCCCCCceeEEeeehhhcCCCcccccchhHHHH-HHHhHHHHHH
Q 006760 546 SYI--PLLPSGFTISPDGHLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVTTV-NNLIGTTVQQ 622 (632)
Q Consensus 546 s~v--~LLPSGF~IlPDg~~~~~~~~s~s~~~~~~~~~~~~GSlLTvaFQil~~s~p~akl~~esV~tv-~~li~~tvq~ 622 (632)
.+| ...++|+.+-|-+. ..++|.+|.-+|+=.. ..+..--|..+ ....-.|++.
T Consensus 145 ~~VR~~~~~~~w~l~p~~~-------------------~~~~t~v~~~~~~Dpk----G~iP~~lvN~~~~~~~~~~~~~ 201 (209)
T cd08905 145 GFIRAENGPTCIVLRPLAG-------------------DPSKTKLTWLLSIDLK----GWLPKSIINQVLSQTQVDFANH 201 (209)
T ss_pred CeEEEEeeccEEEEEECCC-------------------CCCceEEEEEEeecCC----CCCCHHHHHHHhHHhHHHHHHH
Confidence 222 34566666666210 1246777766655433 23333333333 2344477788
Q ss_pred HHHhhC
Q 006760 623 IKAALN 628 (632)
Q Consensus 623 Ik~AL~ 628 (632)
+|..+.
T Consensus 202 Lr~~~~ 207 (209)
T cd08905 202 LRQRMA 207 (209)
T ss_pred HHHHHh
Confidence 877765
No 82
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=69.47 E-value=19 Score=43.07 Aligned_cols=116 Identities=22% Similarity=0.301 Sum_probs=64.7
Q ss_pred ecCCchhhhhhccCCC-Ccchhhhcc-CCCcceEEeeccCCCCCCceEEEEec---c---cCCCCcEEEEEeeccCCcce
Q 006760 453 LPIPPQNVFNFFKDER-TRPQWDVLT-NGNAVQEVAHIANGSNPGNCISVLRA---I---NTSQNNMLILQESCIDSSGS 524 (632)
Q Consensus 453 LPvpp~~vFdFLRde~-~R~eWD~Ls-~G~~vqe~~~Ia~g~~~gN~VSllr~---~---~~~~~~mliLQes~tD~sgS 524 (632)
++.+|+.||++|-+.. .|.|||... .|..++++ +...+|.--+. . --+..+..++.--.-+.-|+
T Consensus 235 V~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~I-------D~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGs 307 (719)
T PLN00188 235 VEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEV-------DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGS 307 (719)
T ss_pred ecCCHHHHHHHHhccCcccccchhcccceEEEEEe-------cCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCc
Confidence 4899999999997444 999999764 34334443 33445542221 1 11234566665544445566
Q ss_pred EEE-EcccChhhhhhhhcCCCCCCC--cccCCccEEcCCCCCCCCCCCCCCCCcCCCCCCCCCCceeEEeeehhhc
Q 006760 525 LVV-YCPVDLPAINIAMSGEDPSYI--PLLPSGFTISPDGHLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILVS 597 (632)
Q Consensus 525 ~vV-YAPVD~~~m~~vm~G~dss~v--~LLPSGF~IlPDg~~~~~~~~s~s~~~~~~~~~~~~GSlLTvaFQil~~ 597 (632)
|++ |-+|.-+.- +--+.+| -+-|+||.|.|=-.. . ...+|+||--+|+=..
T Consensus 308 Yvil~~Sv~Hp~c-----PP~kG~VRg~~~pGGwiIsPL~~~-~----------------g~~r~lv~~~lqtDlk 361 (719)
T PLN00188 308 YVVLFRSREHENC-----GPQPGFVRAHLESGGFNISPLKPR-N----------------GRPRTQVQHLMQIDLK 361 (719)
T ss_pred EEEeeeeeecCCC-----CCCCCeEEEEEeCCEEEEEECCCC-C----------------CCCceEEEEEEEEccC
Confidence 655 445554410 0012222 267999999992100 0 1246888877776544
No 83
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=69.37 E-value=3.8 Score=35.24 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=15.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 006760 6 ERADNCGLRAENDKIRCENIAIRE 29 (632)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lre 29 (632)
-+.+|..|..||+.|+.||..+|+
T Consensus 30 Lke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 30 LKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 355666666667777777777763
No 84
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=67.87 E-value=48 Score=29.29 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=34.3
Q ss_pred eEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHHH
Q 006760 312 LIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCE 365 (632)
Q Consensus 312 lIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~ce 365 (632)
.+.+.+.|.|+|+|.+...- . ...++..++...+.-+-++|+..|.++||
T Consensus 92 ~~~~~~~~~T~~~~~~~~~g---~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 92 ELEPLGDGGTRFVHRETFSG---L-LAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEcCCCcEEEEEeeEEEE---E-EhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 46777677899998643221 1 23345666777777778888888888886
No 85
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=65.01 E-value=99 Score=27.25 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=26.8
Q ss_pred eeeEEechhhHHHHhCCchhhhhhcccccccceEeEEee
Q 006760 204 SGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVIS 242 (632)
Q Consensus 204 ~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis 242 (632)
+..|...+.++-+.|.|...|.+.+|.+. .++.++
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~~~~----~~~~~~ 41 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWPGVK----SVELLS 41 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTSTTEE----EEEEEE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhhceE----EEEEcc
Confidence 44677889999999999999999888554 455665
No 86
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=63.65 E-value=2.7 Score=35.83 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=12.6
Q ss_pred hhHHHHHHhhhccHHHHHH
Q 006760 50 FDEQKLRMENAQLKEELDR 68 (632)
Q Consensus 50 ~eeq~Lr~ENArLk~El~r 68 (632)
.+-++|+.||..|+.|++.
T Consensus 47 ~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 47 EENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777664
No 87
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=62.12 E-value=10 Score=31.47 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhC
Q 006760 9 DNCGLRAENDKIRCENIAIREALKN 33 (632)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal~n 33 (632)
|...|-+|+++|+.+|.++|.-|+.
T Consensus 34 ~R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 34 DRAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667889999999999999988864
No 88
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=61.88 E-value=11 Score=32.04 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=11.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 006760 7 RADNCGLRAENDKIRCENIAIRE 29 (632)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lre 29 (632)
|.||..||++.+.++.|+..+++
T Consensus 20 ~~EN~~Lr~q~~~~~~ER~~L~e 42 (65)
T TIGR02449 20 KSENRLLRAQEKTWREERAQLLE 42 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444444
No 89
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=60.15 E-value=8.2 Score=31.42 Aligned_cols=19 Identities=42% Similarity=0.525 Sum_probs=10.1
Q ss_pred hHHHHHHhhhccHHHHHHH
Q 006760 51 DEQKLRMENAQLKEELDRV 69 (632)
Q Consensus 51 eeq~Lr~ENArLk~El~r~ 69 (632)
+..+|+.||+.||+||++.
T Consensus 30 rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 30 RLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555543
No 90
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=56.95 E-value=10 Score=37.80 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCCC
Q 006760 34 VICPSCGGPPVTED 47 (632)
Q Consensus 34 ~~C~~CGgp~~~~~ 47 (632)
-.||.||++...-|
T Consensus 137 F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 137 FRCPQCGEMLEEYD 150 (178)
T ss_pred CcCCCCCCCCeecc
Confidence 35777777765433
No 91
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=55.67 E-value=86 Score=26.41 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=23.7
Q ss_pred eeeEEechhhHHHHhCCchhhhhhccccc
Q 006760 204 SGVVIMNGLALVDMFMDCSKWVELFPTIV 232 (632)
Q Consensus 204 ~gvV~m~~~~LVe~lmD~~~W~~~Fp~IV 232 (632)
...|...+..+-+.|.|...|...+|.+.
T Consensus 4 ~~~i~a~~~~v~~~l~d~~~~~~~~~~~~ 32 (141)
T cd07812 4 SIEIPAPPEAVWDLLSDPERWPEWSPGLE 32 (141)
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhCcccc
Confidence 44566678999999999999999888753
No 92
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=55.08 E-value=30 Score=34.25 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=32.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhhhh
Q 006760 6 ERADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIAA 74 (632)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~~ 74 (632)
-+.||..|+.|+++|+.+|..|... .++|..++..++++|.-+-.+..
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e---------------------~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKE---------------------LEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777655 34566777777777776655543
No 93
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=53.42 E-value=11 Score=32.95 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=16.9
Q ss_pred HHHHHhhhccHHHHHHHhhhhh
Q 006760 53 QKLRMENAQLKEELDRVSSIAA 74 (632)
Q Consensus 53 q~Lr~ENArLk~El~r~~~~~~ 74 (632)
+.|+.||+|||+||.++.+-+.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq 24 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQ 24 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3488899999999997765543
No 94
>smart00340 HALZ homeobox associated leucin zipper.
Probab=52.59 E-value=11 Score=29.56 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.4
Q ss_pred HHHHhhhccHHHHHHHhhh
Q 006760 54 KLRMENAQLKEELDRVSSI 72 (632)
Q Consensus 54 ~Lr~ENArLk~El~r~~~~ 72 (632)
.|-.||.||+.|+..+.++
T Consensus 16 ~LteeNrRL~ke~~eLral 34 (44)
T smart00340 16 SLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5889999999999988864
No 95
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=52.25 E-value=15 Score=40.33 Aligned_cols=28 Identities=14% Similarity=-0.032 Sum_probs=23.3
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006760 4 QHERADNCGLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 4 q~eR~eN~~Lr~ENekLr~EN~~lreal 31 (632)
+.-++||..||+||.+|++++.++.++.
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l~~~e~l~ 87 (337)
T PRK14872 60 LVLETENFLLKERIALLEERLKSYEEAN 87 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999877665
No 96
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.58 E-value=27 Score=35.74 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=13.5
Q ss_pred HHHhhhccHHHHHHHhhh
Q 006760 55 LRMENAQLKEELDRVSSI 72 (632)
Q Consensus 55 Lr~ENArLk~El~r~~~~ 72 (632)
|+.||++|++|+..+..-
T Consensus 137 L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788888888888766543
No 97
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=50.13 E-value=17 Score=37.91 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhh---ccHHHHHHHhhhhh
Q 006760 15 AENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENA---QLKEELDRVSSIAA 74 (632)
Q Consensus 15 ~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENA---rLk~El~r~~~~~~ 74 (632)
....+|++||++||+.+ .+|+.|++ .|++|.+|++.++.
T Consensus 69 ~~~~~l~~en~~L~~e~---------------------~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 69 ASLFDLREENEELKKEL---------------------LELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778889999988876 23555555 67888888887654
No 98
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=49.52 E-value=11 Score=39.70 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhhhh
Q 006760 8 ADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIAA 74 (632)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~~ 74 (632)
++...-.++.|+.+..|.++|..-.+.-|-. .++..-.+.|..||..||.+++.+..-+.
T Consensus 187 ~~~~~~~~y~err~rNN~A~~kSR~~~k~~~-------~e~~~r~~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 187 PVEKKDPEYKERRRRNNEAVRKSRDKRKQKE-------DEMAHRVAELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred chhcCCHHHHHHHHhhhHHHHHhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666665555543 33333334455555555555554444333
No 99
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=49.16 E-value=15 Score=32.31 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC
Q 006760 13 LRAENDKIRCENIAIREALKNV 34 (632)
Q Consensus 13 Lr~ENekLr~EN~~lreal~n~ 34 (632)
.|.||+||+.||.-|++-+.|.
T Consensus 42 Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 42 VKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777766553
No 100
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.52 E-value=26 Score=27.53 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=12.6
Q ss_pred cchhhhhhHHHHHHHHHHHHHHH
Q 006760 4 QHERADNCGLRAENDKIRCENIA 26 (632)
Q Consensus 4 q~eR~eN~~Lr~ENekLr~EN~~ 26 (632)
|.||. =..||+.-|.|+++|.+
T Consensus 2 QlE~D-y~~LK~~yd~Lk~~~~~ 23 (45)
T PF02183_consen 2 QLERD-YDALKASYDSLKAEYDS 23 (45)
T ss_pred chHHH-HHHHHHHHHHHHHHHHH
Confidence 34443 34566666777776654
No 101
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=47.73 E-value=21 Score=32.60 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=6.7
Q ss_pred HHHhhhccHHHHHHH
Q 006760 55 LRMENAQLKEELDRV 69 (632)
Q Consensus 55 Lr~ENArLk~El~r~ 69 (632)
|+.||++|++|++++
T Consensus 46 l~~~n~~L~~eI~~L 60 (105)
T PRK00888 46 LKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444444
No 102
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=47.59 E-value=22 Score=34.07 Aligned_cols=20 Identities=45% Similarity=0.629 Sum_probs=14.7
Q ss_pred HHHHHHhhhccHHHHHHHhh
Q 006760 52 EQKLRMENAQLKEELDRVSS 71 (632)
Q Consensus 52 eq~Lr~ENArLk~El~r~~~ 71 (632)
..+|+.||++++.|+|-...
T Consensus 90 v~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 90 VEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35688888888888885443
No 103
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=46.76 E-value=2.4e+02 Score=26.01 Aligned_cols=31 Identities=10% Similarity=0.038 Sum_probs=25.7
Q ss_pred ceeeEEechhhHHHHhCCchhhhhhcccccc
Q 006760 203 DSGVVIMNGLALVDMFMDCSKWVELFPTIVS 233 (632)
Q Consensus 203 ~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs 233 (632)
.+-.|...+..+-+.|.|.+.|.+.+|++-.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~ 33 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCLPGASL 33 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcCCCcee
Confidence 3455778899999999999999999887544
No 104
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=46.39 E-value=34 Score=36.21 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=50.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhhhhhccC
Q 006760 5 HERADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIAAKYIG 78 (632)
Q Consensus 5 ~eR~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~~k~~g 78 (632)
.+|..|..+|..-||=|..+..|+.... ++.-|.+.||.+..+||+|+..++.+...|.-
T Consensus 198 rr~rNN~A~~kSR~~~k~~~~e~~~r~~--------------~leken~~lr~~v~~l~~el~~~~~~~~~~~~ 257 (269)
T KOG3119|consen 198 RRRRNNEAVRKSRDKRKQKEDEMAHRVA--------------ELEKENEALRTQVEQLKKELATLRRLFLQLPK 257 (269)
T ss_pred HHHhhhHHHHHhhhhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4678899999999999999888887762 34568899999999999999999988777653
No 105
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.20 E-value=30 Score=31.95 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhh
Q 006760 13 LRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSS 71 (632)
Q Consensus 13 Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~ 71 (632)
|.+....|-+|=..||..+. ++--|.++||+||+.||+-|+.+..
T Consensus 13 le~~l~~l~~~~~~LK~~~~--------------~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQ--------------ELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444455555555555552 1223566777788877777776544
No 106
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=45.58 E-value=31 Score=32.15 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=16.1
Q ss_pred hhHHHHHHhhhccHHHHHHHh
Q 006760 50 FDEQKLRMENAQLKEELDRVS 70 (632)
Q Consensus 50 ~eeq~Lr~ENArLk~El~r~~ 70 (632)
-|.++||+||..||+.++++.
T Consensus 36 EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 36 EENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 466778888888888888763
No 107
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=45.06 E-value=13 Score=30.87 Aligned_cols=16 Identities=50% Similarity=1.120 Sum_probs=12.3
Q ss_pred HHHhCCCCCCCCCCCC
Q 006760 29 EALKNVICPSCGGPPV 44 (632)
Q Consensus 29 eal~n~~C~~CGgp~~ 44 (632)
+.+.+-+||||||-.+
T Consensus 37 e~~l~~~CPNCgGelv 52 (57)
T PF06906_consen 37 ETMLNGVCPNCGGELV 52 (57)
T ss_pred HHHhcCcCcCCCCccc
Confidence 4555789999999654
No 108
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=44.60 E-value=24 Score=36.37 Aligned_cols=29 Identities=31% Similarity=0.542 Sum_probs=21.1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHhC
Q 006760 5 HERADNCGLRAENDKIRCENIAIREALKN 33 (632)
Q Consensus 5 ~eR~eN~~Lr~ENekLr~EN~~lreal~n 33 (632)
.||+|=..||.|||||+.|=.++|.-++.
T Consensus 113 ~e~sEF~~lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 113 IERSEFANLRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777788888888888887776665543
No 109
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=44.07 E-value=12 Score=32.95 Aligned_cols=28 Identities=25% Similarity=0.624 Sum_probs=24.8
Q ss_pred eeeeeecCCchhhhhhccCCCCcchhhh
Q 006760 448 ATTFWLPIPPQNVFNFFKDERTRPQWDV 475 (632)
Q Consensus 448 ~tS~wLPvpp~~vFdFLRde~~R~eWD~ 475 (632)
..++-++.||..||++|.|-.+..+|..
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~ 29 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDP 29 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhcc
Confidence 3567789999999999999999999973
No 110
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=43.18 E-value=25 Score=30.04 Aligned_cols=20 Identities=30% Similarity=0.425 Sum_probs=9.5
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 006760 8 ADNCGLRAENDKIRCENIAI 27 (632)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~l 27 (632)
.+|..|++|||.|+.|+...
T Consensus 47 ~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 47 EENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555554443
No 111
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=43.14 E-value=19 Score=31.90 Aligned_cols=28 Identities=25% Similarity=0.673 Sum_probs=23.4
Q ss_pred eeeeeecCCchhhhhhccCCCCcchhhh
Q 006760 448 ATTFWLPIPPQNVFNFFKDERTRPQWDV 475 (632)
Q Consensus 448 ~tS~wLPvpp~~vFdFLRde~~R~eWD~ 475 (632)
..++-+|.||+.||++|.|.....+|.-
T Consensus 5 ~~~~~v~a~~e~V~~~l~d~~~~~~w~~ 32 (139)
T PF10604_consen 5 EVSIEVPAPPEAVWDLLSDPENWPRWWP 32 (139)
T ss_dssp EEEEEESS-HHHHHHHHTTTTGGGGTST
T ss_pred EEEEEECCCHHHHHHHHhChhhhhhhhh
Confidence 4566779999999999999999999963
No 112
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=43.04 E-value=8.5 Score=35.67 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=23.3
Q ss_pred eeeeecCCchhhhhhccCCCCcchhh
Q 006760 449 TTFWLPIPPQNVFNFFKDERTRPQWD 474 (632)
Q Consensus 449 tS~wLPvpp~~vFdFLRde~~R~eWD 474 (632)
-++.+|.||++||+||.|.....+|.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~ 28 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCL 28 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcC
Confidence 47889999999999999998888884
No 113
>PHA03162 hypothetical protein; Provisional
Probab=43.04 E-value=74 Score=30.63 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Q 006760 12 GLRAENDKIRCENIAIREALKNVI 35 (632)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal~n~~ 35 (632)
.|-+|..||+-||..||..|+...
T Consensus 17 eLaaeL~kLqmENK~LKkkl~~~~ 40 (135)
T PHA03162 17 DLAAEIAKLQLENKALKKKIKEGT 40 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 588999999999999999996643
No 114
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=42.99 E-value=2.4e+02 Score=24.99 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=56.8
Q ss_pred echhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecCCeEEE
Q 006760 209 MNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAV 288 (632)
Q Consensus 209 m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~G~WaV 288 (632)
..+..+-+++.|.+.|.++||.+.. ++|++.... -|.+++.+.-...+ ..|+.|...+-.+. +
T Consensus 3 ap~~~V~~~i~D~e~~~~~~p~~~~----v~vl~~~~~--------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~ 65 (130)
T PF03364_consen 3 APPEEVWSVITDYENYPRFFPPVKE----VRVLERDGD--------GMRARWEVKFGGIK--RSWTSRVTEDPPER---I 65 (130)
T ss_dssp S-HHHHHHHHTTGGGHHHHCTTEEE----EEEEEEECC--------EEEEEEEECTTTTC--EEEEEEEEEECTTT---E
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCce----EEEEEeCCC--------eEEEEEEEecCCEE--EEEEEEEEEEEeee---e
Confidence 4577889999999999999987664 557764322 24455555544444 33444444443333 2
Q ss_pred EEEecCCCCCCCccceeccCCcceEEeC--CCCceEEEEEEeeeecCCC
Q 006760 289 VNVSYDSPQFSSQCQSHRFPSGCLIQDL--PNGYSKVTWVEHLEIEDRT 335 (632)
Q Consensus 289 vDvSld~~~~~~~~r~rrlPSGclIq~~--~nG~skVtwVEH~e~d~~~ 335 (632)
-+....+. ...+-..|+ +++. .+|++.+++.-.++++...
T Consensus 66 ~~~~~~g~-~~~~~g~W~------~~~~~~~~~g~~~~v~~~~~~~~~~ 107 (130)
T PF03364_consen 66 RFEQISGP-FKSFEGSWR------FEPLGGNEGGTRTRVTYDYEVDPPG 107 (130)
T ss_dssp EEESSETT-EEEEEEEEE------EEEETTECCEEEEEEEEEEEEETSS
T ss_pred eeeecCCC-chhcEEEEE------EEECCCCcCCCEEEEEEEEEEecCc
Confidence 22222221 111111222 1222 3357888888888887776
No 115
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=42.91 E-value=15 Score=32.80 Aligned_cols=30 Identities=23% Similarity=0.565 Sum_probs=26.8
Q ss_pred EeeeeeecCCchhhhhhccCCCCcchhhhc
Q 006760 447 AATTFWLPIPPQNVFNFFKDERTRPQWDVL 476 (632)
Q Consensus 447 A~tS~wLPvpp~~vFdFLRde~~R~eWD~L 476 (632)
...|+.++.||..||++|.|.....+|.-.
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~ 33 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEAYPEWSPK 33 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhhhhhhCcc
Confidence 456889999999999999999999999853
No 116
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=42.72 E-value=11 Score=37.43 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=5.9
Q ss_pred hHHHHHHhhhccHHHHHHH
Q 006760 51 DEQKLRMENAQLKEELDRV 69 (632)
Q Consensus 51 eeq~Lr~ENArLk~El~r~ 69 (632)
|...||+|+.|||||+.-+
T Consensus 25 EKE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHCH----------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555777777777776543
No 117
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=41.04 E-value=40 Score=37.55 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=15.1
Q ss_pred HHHHHhhhccHHHHHHHhh
Q 006760 53 QKLRMENAQLKEELDRVSS 71 (632)
Q Consensus 53 q~Lr~ENArLk~El~r~~~ 71 (632)
.+++.|-.+||+|++++..
T Consensus 46 ~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 46 KNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4677888889999988765
No 118
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.95 E-value=54 Score=40.31 Aligned_cols=55 Identities=20% Similarity=0.371 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhhh
Q 006760 13 LRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIA 73 (632)
Q Consensus 13 Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~ 73 (632)
|+.-||.|-.+=.-||+.|.|- ||. ..+.-+++--||-+.|+||||=+-|++.+.
T Consensus 337 lkEr~deletdlEILKaEmeek-----G~~-~~~~ss~qfkqlEqqN~rLKdalVrLRDls 391 (1243)
T KOG0971|consen 337 LKERVDELETDLEILKAEMEEK-----GSD-GQAASSYQFKQLEQQNARLKDALVRLRDLS 391 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----CCC-CcccchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444555555556678888887 443 334457899999999999999999998763
No 119
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=40.38 E-value=18 Score=33.58 Aligned_cols=21 Identities=43% Similarity=0.534 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 006760 13 LRAENDKIRCENIAIREALKN 33 (632)
Q Consensus 13 Lr~ENekLr~EN~~lreal~n 33 (632)
|-.||-.||-||..||+.|..
T Consensus 34 lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 34 LVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHhhHHHHhhHHHHHHHhCC
Confidence 446788888888888888855
No 120
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=39.85 E-value=24 Score=28.81 Aligned_cols=31 Identities=32% Similarity=0.401 Sum_probs=25.2
Q ss_pred cccchh--hhhhHHHHHHHHHHHHHHHHHHHHh
Q 006760 2 KAQHER--ADNCGLRAENDKIRCENIAIREALK 32 (632)
Q Consensus 2 K~q~eR--~eN~~Lr~ENekLr~EN~~lreal~ 32 (632)
|+..|+ .|+...+++..+|+.||..||+.|.
T Consensus 14 kaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 14 KAEREARSLDRSAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred HHhHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 444443 3689999999999999999999874
No 121
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=39.73 E-value=72 Score=30.72 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=7.1
Q ss_pred HHHHhhhccHHHHHHH
Q 006760 54 KLRMENAQLKEELDRV 69 (632)
Q Consensus 54 ~Lr~ENArLk~El~r~ 69 (632)
+|-.||+.|..|++++
T Consensus 78 eLE~~k~~L~qqv~~L 93 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKL 93 (135)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 122
>smart00338 BRLZ basic region leucin zipper.
Probab=39.39 E-value=56 Score=26.84 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 006760 14 RAENDKIRCENIAIRE 29 (632)
Q Consensus 14 r~ENekLr~EN~~lre 29 (632)
..+.+.|.+||..|+.
T Consensus 32 e~~~~~L~~en~~L~~ 47 (65)
T smart00338 32 ERKVEQLEAENERLKK 47 (65)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 123
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=39.39 E-value=19 Score=31.82 Aligned_cols=27 Identities=15% Similarity=0.395 Sum_probs=24.1
Q ss_pred eeeeeecCCchhhhhhccCCCCcchhh
Q 006760 448 ATTFWLPIPPQNVFNFFKDERTRPQWD 474 (632)
Q Consensus 448 ~tS~wLPvpp~~vFdFLRde~~R~eWD 474 (632)
..+.-+++||++||++|.|..+..+|.
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~ 30 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWH 30 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhc
Confidence 356778999999999999999999996
No 124
>PF15058 Speriolin_N: Speriolin N terminus
Probab=39.25 E-value=43 Score=34.14 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006760 13 LRAENDKIRCENIAIREAL 31 (632)
Q Consensus 13 Lr~ENekLr~EN~~lreal 31 (632)
||.++|+|-.||.+||...
T Consensus 10 lrhqierLv~ENeeLKKlV 28 (200)
T PF15058_consen 10 LRHQIERLVRENEELKKLV 28 (200)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 5666667777776666655
No 125
>PF14645 Chibby: Chibby family
Probab=38.89 E-value=30 Score=32.33 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=14.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 006760 7 RADNCGLRAENDKIRCENIAIR 28 (632)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lr 28 (632)
..++..||.||..|+.||.-||
T Consensus 70 ~~~~~~l~~~n~~L~EENN~Lk 91 (116)
T PF14645_consen 70 GEENQRLRKENQQLEEENNLLK 91 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777776655
No 126
>PF15058 Speriolin_N: Speriolin N terminus
Probab=38.24 E-value=33 Score=34.96 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=19.7
Q ss_pred hhhhhHHHHHHHHHH------HHHHHHHHHHhC
Q 006760 7 RADNCGLRAENDKIR------CENIAIREALKN 33 (632)
Q Consensus 7 R~eN~~Lr~ENekLr------~EN~~lreal~n 33 (632)
||.+..|=.|||.|| .||.++|.||..
T Consensus 11 rhqierLv~ENeeLKKlVrLirEN~eLksaL~e 43 (200)
T PF15058_consen 11 RHQIERLVRENEELKKLVRLIRENHELKSALGE 43 (200)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777766 478888888544
No 127
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=38.15 E-value=11 Score=39.12 Aligned_cols=38 Identities=34% Similarity=0.496 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhcc-----HHHHH
Q 006760 9 DNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQL-----KEELD 67 (632)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArL-----k~El~ 67 (632)
.+..||.-.+-|-+||.++|+ |.+||+.||||| ..|++
T Consensus 130 ~I~dLrrlVe~L~aeNErLr~---------------------EnkqL~ae~arL~k~~~eke~~ 172 (243)
T PF08961_consen 130 KIADLRRLVEFLLAENERLRR---------------------ENKQLKAENARLLKGPVEKELD 172 (243)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhcCChhhhhh
Confidence 355677777777777777765 346788899998 55665
No 128
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=38.09 E-value=60 Score=28.13 Aligned_cols=56 Identities=25% Similarity=0.347 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhhh
Q 006760 12 GLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIA 73 (632)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~ 73 (632)
.|+.||=.|+-.-.-|.+.+.+ .+|....++.-+.=.|+.|++.|+.|+++....+
T Consensus 11 ~L~KENF~LKLrI~fLee~l~~------~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l 66 (75)
T PF07989_consen 11 KLKKENFNLKLRIYFLEERLQK------LGPESIEELLKENIELKVEVESLKRELQEKKKLL 66 (75)
T ss_pred HHHHhhhhHHHHHHHHHHHHHh------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777888862 2333333444444467788888888877766543
No 129
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.65 E-value=41 Score=31.09 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhC
Q 006760 9 DNCGLRAENDKIRCENIAIREALKN 33 (632)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal~n 33 (632)
.=..|-.||..||-||..||+.|..
T Consensus 30 ~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 30 QLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888888888888888854
No 130
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=37.31 E-value=50 Score=37.21 Aligned_cols=52 Identities=31% Similarity=0.378 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhhhhhcc
Q 006760 11 CGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIAAKYI 77 (632)
Q Consensus 11 ~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~~k~~ 77 (632)
+.+++|+.+||+|-.+++.-+ ++...|.++|..||..|.+|.-+..+ +.+++
T Consensus 30 s~~~aq~~~~~a~~~ai~a~~--------------~~~E~~l~~Lq~e~~~l~e~~v~~~a-~~~~~ 81 (459)
T KOG0288|consen 30 SRLSAQLVILRAESRAIKAKL--------------QEKELELNRLQEENTQLNEERVREEA-TEKTL 81 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 568889999999988888776 34456889999999999999887433 33443
No 131
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=37.19 E-value=22 Score=32.21 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.7
Q ss_pred eeeeecCCchhhhhhccCCCCcchhh
Q 006760 449 TTFWLPIPPQNVFNFFKDERTRPQWD 474 (632)
Q Consensus 449 tS~wLPvpp~~vFdFLRde~~R~eWD 474 (632)
.+.-++.||++||++|.|..+..+|.
T Consensus 4 ~~~~i~ap~e~Vw~~l~d~~~~~~W~ 29 (144)
T cd07825 4 VSRTVDAPAEAVFAVLADPRRHPEID 29 (144)
T ss_pred EEEEEeCCHHHHHHHHhCccccceeC
Confidence 46667999999999999999999997
No 132
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=36.99 E-value=19 Score=32.12 Aligned_cols=28 Identities=18% Similarity=0.521 Sum_probs=25.5
Q ss_pred eeeeeecCCchhhhhhccCCCCcchhhh
Q 006760 448 ATTFWLPIPPQNVFNFFKDERTRPQWDV 475 (632)
Q Consensus 448 ~tS~wLPvpp~~vFdFLRde~~R~eWD~ 475 (632)
..++-++.||+.||++|.|.....+|.-
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~ 30 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMS 30 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhh
Confidence 4678889999999999999999999985
No 133
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=36.92 E-value=21 Score=31.81 Aligned_cols=30 Identities=23% Similarity=0.549 Sum_probs=26.3
Q ss_pred EEeeeeeecCCchhhhhhccCCCCcchhhh
Q 006760 446 NAATTFWLPIPPQNVFNFFKDERTRPQWDV 475 (632)
Q Consensus 446 sA~tS~wLPvpp~~vFdFLRde~~R~eWD~ 475 (632)
+...++-++.||..||+++.|.....+|.-
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~ 31 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTP 31 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccC
Confidence 345678899999999999999999999974
No 134
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.70 E-value=45 Score=32.38 Aligned_cols=57 Identities=26% Similarity=0.339 Sum_probs=40.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhhhhhc
Q 006760 8 ADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIAAKY 76 (632)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~~k~ 76 (632)
.+...|+.|+..|+.++..++..+++..+. | +.++ |+.+-+.|++|++.+..-+..+
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~~----~------t~~e--l~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSSE----P------TNEE--LREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C------CHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999876542 2 2222 6677777777776665554444
No 135
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=36.38 E-value=18 Score=32.80 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=26.0
Q ss_pred eeeeeecCCchhhhhhccCCCCcchhhhc
Q 006760 448 ATTFWLPIPPQNVFNFFKDERTRPQWDVL 476 (632)
Q Consensus 448 ~tS~wLPvpp~~vFdFLRde~~R~eWD~L 476 (632)
..++.++.||.+||+.|.|-.+..+|.-.
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~ 30 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPN 30 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcC
Confidence 36889999999999999999999999743
No 136
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=36.21 E-value=12 Score=38.77 Aligned_cols=18 Identities=50% Similarity=0.667 Sum_probs=0.0
Q ss_pred HHHHHHhhhccHHHHHHH
Q 006760 52 EQKLRMENAQLKEELDRV 69 (632)
Q Consensus 52 eq~Lr~ENArLk~El~r~ 69 (632)
.++||.||.+|+.|-.|+
T Consensus 145 NErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 145 NERLRRENKQLKAENARL 162 (243)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 137
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=35.64 E-value=19 Score=33.18 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=25.4
Q ss_pred EeeeeeecCCchhhhhhccCCCCcchh
Q 006760 447 AATTFWLPIPPQNVFNFFKDERTRPQW 473 (632)
Q Consensus 447 A~tS~wLPvpp~~vFdFLRde~~R~eW 473 (632)
|.+++.++.||++||+.|-|+.+-.+|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W 28 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKF 28 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccc
Confidence 678899999999999999999999998
No 138
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=35.44 E-value=14 Score=33.10 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=24.4
Q ss_pred eeeeecCCchhhhhhccCCCCcchhhh
Q 006760 449 TTFWLPIPPQNVFNFFKDERTRPQWDV 475 (632)
Q Consensus 449 tS~wLPvpp~~vFdFLRde~~R~eWD~ 475 (632)
.++-++.||++||+||.|.....+|..
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p 31 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIP 31 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhcc
Confidence 466789999999999999999999984
No 139
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.40 E-value=32 Score=39.35 Aligned_cols=58 Identities=21% Similarity=0.379 Sum_probs=32.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhh
Q 006760 8 ADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSS 71 (632)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~ 71 (632)
.||..|++|||+||..+..+.+.+.+++=. ...++.-|.++|..|=++|+..++.+..
T Consensus 80 ~~N~~l~~eN~~L~~r~~~id~~i~~av~~------~~~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 80 SENEALKAENERLQKREQSIDQQIQQAVQS------ETQELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555333333333332210 1235556777888888888888876644
No 140
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=34.95 E-value=66 Score=29.41 Aligned_cols=32 Identities=22% Similarity=0.624 Sum_probs=27.3
Q ss_pred EeeeeeecCCchhhhhhccCCCCcchhhhccC
Q 006760 447 AATTFWLPIPPQNVFNFFKDERTRPQWDVLTN 478 (632)
Q Consensus 447 A~tS~wLPvpp~~vFdFLRde~~R~eWD~Ls~ 478 (632)
...|.-++.||++||+++.|..+..+|.....
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~ 35 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKNWPEWSPWEK 35 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcccCcccCchhh
Confidence 34577789999999999999999999986543
No 141
>smart00338 BRLZ basic region leucin zipper.
Probab=34.31 E-value=45 Score=27.38 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=21.2
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006760 4 QHERADNCGLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 4 q~eR~eN~~Lr~ENekLr~EN~~lreal 31 (632)
+.-..+|..|+.+++.|+.||..|++-+
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445678888888888888888887755
No 142
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=34.31 E-value=3.7e+02 Score=24.69 Aligned_cols=117 Identities=13% Similarity=0.165 Sum_probs=60.5
Q ss_pred eEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecCCe
Q 006760 206 VVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGS 285 (632)
Q Consensus 206 vV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~G~ 285 (632)
.+...+.++-+++.|.++|.+..|.+ +..++++.+...+.++..+ +... ...|.+.-+-.|+...-....
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~v----~~~~~~~~~~~~~~g~~~~-~~~~-----~~~~~~~~~~~~v~~~~p~~~ 77 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPGV----ERVVELEPGDEAGIGARRR-YTWR-----GLLPYRLRFELRVTRIEPLSL 77 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhce----EEEEEccCCCCCCcceEEE-EEEE-----ecCCcEEEEEEEEEeecCCcE
Confidence 34557889999999999999988854 5566665322222222322 1111 112222223334444334445
Q ss_pred EEEEEEecCCCCCCCccceeccCCcceEEeCCCCceEEEEEEeeeecCC---Cccchhhhhhh
Q 006760 286 WAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDR---TPIHRLYQDLI 345 (632)
Q Consensus 286 WaVvDvSld~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~---~~vh~lyrpl~ 345 (632)
+++. . ++. .....+ .-+++.++| |+||+-.+++..-. . .+.++.+++
T Consensus 78 ~~~~-~--~g~-~~~~~~-------~~~~~~~~g-t~vt~~~~~~~~~~~~~~-l~~l~~~l~ 127 (146)
T cd07824 78 LEVR-A--SGD-LEGVGR-------WTLAPDGSG-TVVRYDWEVRTTKPWMNL-LAPLARPVF 127 (146)
T ss_pred EEEE-E--EEe-eeEEEE-------EEEEEcCCC-EEEEEEEEEEcCHHHHHh-hhHhhhhHH
Confidence 5442 2 111 000011 236665554 99999888886542 2 445555555
No 143
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=33.98 E-value=22 Score=30.14 Aligned_cols=27 Identities=26% Similarity=0.782 Sum_probs=23.6
Q ss_pred eeeeecCCchhhhhhccCCCCcchhhh
Q 006760 449 TTFWLPIPPQNVFNFFKDERTRPQWDV 475 (632)
Q Consensus 449 tS~wLPvpp~~vFdFLRde~~R~eWD~ 475 (632)
.++-++.||+.||++|.|..+..+|.-
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~~ 29 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWSP 29 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhCc
Confidence 456779999999999999999999963
No 144
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=33.84 E-value=98 Score=26.38 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHH
Q 006760 13 LRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDR 68 (632)
Q Consensus 13 Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r 68 (632)
|-+-.+.|+.||..+|+.. ..++.|+++|++-.+-
T Consensus 12 Li~~~~~L~~EN~~Lr~q~---------------------~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 12 LLEYLERLKSENRLLRAQE---------------------KTWREERAQLLEKNEQ 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence 4556678888888888765 4477888888776663
No 145
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=33.30 E-value=77 Score=32.86 Aligned_cols=52 Identities=33% Similarity=0.457 Sum_probs=34.6
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhhhh
Q 006760 2 KAQHERADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIAA 74 (632)
Q Consensus 2 K~q~eR~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~~ 74 (632)
|+|+++.+ ..+++-.+|||.|=..+-+ -|-..||.||.+||-||||+..-+-
T Consensus 89 kaqq~~v~-~QQ~~~f~kiRsel~S~e~--------------------sEF~~lr~e~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 89 KAQQEKVS-YQQKVDFAKIRSELVSIER--------------------SEFANLRAENEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666654 4566777777777443322 1334599999999999999887543
No 146
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=32.51 E-value=36 Score=35.75 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 006760 8 ADNCGLRAENDKIRCENIAI 27 (632)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~l 27 (632)
.||.+|+.|||.||+-|..|
T Consensus 104 een~~L~~en~~Lr~~n~~L 123 (292)
T KOG4005|consen 104 EENEILQNENDSLRAINESL 123 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 147
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=32.04 E-value=21 Score=31.74 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=24.3
Q ss_pred eeeeeecCCchhhhhhccCCCCcchhh
Q 006760 448 ATTFWLPIPPQNVFNFFKDERTRPQWD 474 (632)
Q Consensus 448 ~tS~wLPvpp~~vFdFLRde~~R~eWD 474 (632)
..|+-++.||+.||++|.|..+-++|.
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~ 29 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWF 29 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhh
Confidence 357778999999999999999999996
No 148
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=31.93 E-value=37 Score=39.33 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006760 12 GLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal 31 (632)
+|-+|||.||+||.+||..|
T Consensus 313 ~ll~Ene~Lk~ENatLk~qL 332 (655)
T KOG4343|consen 313 ALLSENEQLKKENATLKRQL 332 (655)
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 34566777777777776666
No 149
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=31.52 E-value=85 Score=31.53 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 006760 9 DNCGLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal 31 (632)
-|.+||.++|..+..|.+|++-+
T Consensus 82 vN~lLReQLEq~~~~N~~L~~dl 104 (182)
T PF15035_consen 82 VNALLREQLEQARKANEALQEDL 104 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667766666677776666655
No 150
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=30.62 E-value=34 Score=34.32 Aligned_cols=34 Identities=38% Similarity=0.599 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHH
Q 006760 35 ICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDR 68 (632)
Q Consensus 35 ~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r 68 (632)
.||.||.....-|-+..-+.|.-+=-+|++|++|
T Consensus 134 ~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~l~~ 167 (176)
T COG1675 134 TCPKCGEDLEEYDSSEEIEELESELDELEEELER 167 (176)
T ss_pred CCCCCCchhhhccchHHHHHHHHHHHHHHHHHhc
Confidence 5777777665444444444444444444444444
No 151
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=30.57 E-value=52 Score=29.08 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=16.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhC
Q 006760 7 RADNCGLRAENDKIRCENIAIREALKN 33 (632)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n 33 (632)
|+.+..|++||++||.|-..-.+.++.
T Consensus 45 ~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 45 QHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666677777666666665543
No 152
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=30.40 E-value=17 Score=37.57 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=40.7
Q ss_pred CCCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeee-cCCchhhhhhccCCCCcchhhhcc
Q 006760 410 TSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWL-PIPPQNVFNFFKDERTRPQWDVLT 477 (632)
Q Consensus 410 ~s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wL-Pvpp~~vFdFLRde~~R~eWD~Ls 477 (632)
+-.+.+|..+-.. .+++|....-.+.| | =...|-+ -+ -++|..|+||+-|..-|.+||.+.
T Consensus 25 ~~~~~~We~~~~k--~~~~i~~q~~~~~g-~-~~Yk~~~---vfeDvtp~~~~Dv~~D~eYRkkWD~~v 86 (219)
T KOG2761|consen 25 CDAGQGWELVMDK--STPSIWRQRRPKTG-L-YEYKSRT---VFEDVTPEIVRDVQWDDEYRKKWDDMV 86 (219)
T ss_pred cCcccchhhhccc--CCceEEEEcccCCC-C-EEEEEEE---EEcCCCHHHHHHHHhhhHHHHHHHHHh
Confidence 6678899887543 34555552112233 2 2344432 34 499999999999999999999764
No 153
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=29.45 E-value=54 Score=25.83 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=8.2
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 006760 7 RADNCGLRAENDKIRCEN 24 (632)
Q Consensus 7 R~eN~~Lr~ENekLr~EN 24 (632)
..+...|+.||..||.++
T Consensus 27 e~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 27 ENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHh
Confidence 344555555555555554
No 154
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=29.34 E-value=1.3e+02 Score=26.38 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=12.9
Q ss_pred HHHHhhhccHHHH------HHHhhhhhhccC
Q 006760 54 KLRMENAQLKEEL------DRVSSIAAKYIG 78 (632)
Q Consensus 54 ~Lr~ENArLk~El------~r~~~~~~k~~g 78 (632)
+|+.||.+|+=|+ +|+..+|.+-+|
T Consensus 53 ~l~~e~~~L~lE~~~l~~~~rIe~iA~~~Lg 83 (97)
T PF04999_consen 53 QLQEENERLRLEIATLSSPSRIERIAREKLG 83 (97)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHcCC
Confidence 3444444444444 455566765554
No 155
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=29.10 E-value=1.7e+02 Score=28.20 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=30.5
Q ss_pred eEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeecCCeEEEEEEecCCC
Q 006760 236 KTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIEQGSWAVVNVSYDSP 296 (632)
Q Consensus 236 ~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~~G~WaVvDvSld~~ 296 (632)
..+++++....+..+|.--.+.+++.-.+- .|..=.|-|+. .+|.|-|+||.++++
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~V~t~i~~~~g-~~i~v~y~l~~----~~g~Wki~Dv~ieGv 140 (170)
T PF05494_consen 85 QSVEVLSEPPNGRKGGNRAIVRTEIISKDG-QPIPVDYRLRK----KDGKWKIYDVIIEGV 140 (170)
T ss_dssp -EEEE------S-TT-SEEEEEEEEEET-T-EEEEEEEEEEE----ETTEEEEEEEEETTE
T ss_pred CeEEEEeccCCCCCCCCEEEEEEEEEcCCC-CcEEEEEEEEE----cCCCeEEEEEEEcce
Confidence 456666555554434555667777776665 33333344443 889999999999986
No 156
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.96 E-value=70 Score=26.55 Aligned_cols=16 Identities=50% Similarity=0.875 Sum_probs=8.9
Q ss_pred HHHHhhhccHHHHHHH
Q 006760 54 KLRMENAQLKEELDRV 69 (632)
Q Consensus 54 ~Lr~ENArLk~El~r~ 69 (632)
+|+.||..|++|++++
T Consensus 35 ~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 35 ELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3555555555555555
No 157
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=28.82 E-value=59 Score=29.18 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=6.7
Q ss_pred HhhhccHHHHH
Q 006760 57 MENAQLKEELD 67 (632)
Q Consensus 57 ~ENArLk~El~ 67 (632)
++|++.|...+
T Consensus 53 vkn~~vrqkne 63 (87)
T PF10883_consen 53 VKNAKVRQKNE 63 (87)
T ss_pred HHHHHHHHHhH
Confidence 66666665544
No 158
>PHA02562 46 endonuclease subunit; Provisional
Probab=28.65 E-value=1.5e+02 Score=33.81 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhh
Q 006760 33 NVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSS 71 (632)
Q Consensus 33 n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~ 71 (632)
...||.|+.+.... ...-..|..+=+.|++|++.+..
T Consensus 284 ~~~Cp~C~~~~~~~--~~~~~~l~d~i~~l~~~l~~l~~ 320 (562)
T PHA02562 284 GGVCPTCTQQISEG--PDRITKIKDKLKELQHSLEKLDT 320 (562)
T ss_pred CCCCCCCCCcCCCc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999987543 22222333334444455444433
No 159
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=28.32 E-value=39 Score=29.82 Aligned_cols=26 Identities=27% Similarity=0.684 Sum_probs=23.6
Q ss_pred eeeeecCCchhhhhhccCCCCcchhh
Q 006760 449 TTFWLPIPPQNVFNFFKDERTRPQWD 474 (632)
Q Consensus 449 tS~wLPvpp~~vFdFLRde~~R~eWD 474 (632)
.+.-++.||++||++|.|..+..+|.
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~ 29 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWN 29 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccC
Confidence 45667999999999999999999998
No 160
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=27.47 E-value=30 Score=28.82 Aligned_cols=16 Identities=50% Similarity=0.719 Sum_probs=14.2
Q ss_pred HHHHHhhhccHHHHHH
Q 006760 53 QKLRMENAQLKEELDR 68 (632)
Q Consensus 53 q~Lr~ENArLk~El~r 68 (632)
+++|.||.+||.|++|
T Consensus 2 ~~~~~~ve~Lr~el~~ 17 (63)
T smart00224 2 DQLRKEVEQLRKELSR 17 (63)
T ss_pred hHHHHHHHHHHHHHCC
Confidence 5799999999999884
No 161
>PHA03162 hypothetical protein; Provisional
Probab=27.20 E-value=30 Score=33.21 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=21.1
Q ss_pred CCCCCchhHHHHHHhhhccHHHHHH
Q 006760 44 VTEDSYFDEQKLRMENAQLKEELDR 68 (632)
Q Consensus 44 ~~~~~~~eeq~Lr~ENArLk~El~r 68 (632)
..+|+..|.|+|.+||-.||.-+.+
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467788999999999999998864
No 162
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.20 E-value=1.3e+02 Score=24.54 Aligned_cols=7 Identities=29% Similarity=0.695 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 006760 18 DKIRCEN 24 (632)
Q Consensus 18 ekLr~EN 24 (632)
+.|..||
T Consensus 36 ~~L~~en 42 (64)
T PF00170_consen 36 EELESEN 42 (64)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 163
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.83 E-value=49 Score=30.30 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=16.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 006760 7 RADNCGLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal 31 (632)
+.+-..+++||++|+.||.+|++.+
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677777777777666655
No 164
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.74 E-value=80 Score=27.44 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=22.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhC
Q 006760 6 ERADNCGLRAENDKIRCENIAIREALKN 33 (632)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lreal~n 33 (632)
-++.+-.|+.||+.|+.|...-+|.++.
T Consensus 44 ~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 44 AQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778888888888888887777764
No 165
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=26.42 E-value=90 Score=33.31 Aligned_cols=24 Identities=29% Similarity=0.214 Sum_probs=18.2
Q ss_pred chhHHHHHHhhhccHHHHHHHhhh
Q 006760 49 YFDEQKLRMENAQLKEELDRVSSI 72 (632)
Q Consensus 49 ~~eeq~Lr~ENArLk~El~r~~~~ 72 (632)
..++++||.|+-+|++|+.++..-
T Consensus 208 ~~r~~~lr~~~~~l~~el~~aK~~ 231 (264)
T PF07246_consen 208 EARESGLRNESKWLEHELSDAKED 231 (264)
T ss_pred HHhHhhhHHHHHHHHHHHHHHHHH
Confidence 345667899999999999876553
No 166
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=26.25 E-value=57 Score=33.19 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 006760 8 ADNCGLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal 31 (632)
+|=..||+.|.||+.||.+||+..
T Consensus 55 ~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 55 NEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455789999999999999999864
No 167
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=26.10 E-value=34 Score=32.18 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 006760 10 NCGLRAENDKIRCENIAIREALKNVICPSCGG 41 (632)
Q Consensus 10 N~~Lr~ENekLr~EN~~lreal~n~~C~~CGg 41 (632)
|-.||.++.-|+.-=..+...|+...|-.|-.
T Consensus 44 nqqLreQqk~L~e~i~~LE~RLRaGlCDRC~V 75 (120)
T PF10482_consen 44 NQQLREQQKTLHENIKVLENRLRAGLCDRCTV 75 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 44555555544444445667788889999975
No 168
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=26.01 E-value=69 Score=30.31 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC
Q 006760 12 GLRAENDKIRCENIAIREALKNVIC 36 (632)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal~n~~C 36 (632)
.|-+|..||+-||.+||..++...=
T Consensus 7 eLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 7 ELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4778888888888888888887543
No 169
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.95 E-value=70 Score=33.65 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=12.3
Q ss_pred hHHHHHHhhhccHHHHHHHhh
Q 006760 51 DEQKLRMENAQLKEELDRVSS 71 (632)
Q Consensus 51 eeq~Lr~ENArLk~El~r~~~ 71 (632)
|...||..|-+|=|-+.-+.+
T Consensus 115 Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 115 EVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 335577777777655544333
No 170
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=25.91 E-value=1.1e+02 Score=32.79 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhhhhh
Q 006760 15 AENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIAAK 75 (632)
Q Consensus 15 ~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~~k 75 (632)
++..++..||.++|+.+ .|.+|+..|...||+|..|++.+..-
T Consensus 66 ~~~~~~~~en~~Lk~~l------------------~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 66 KSLKDLALENEELKKEL------------------AELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHhHHHHHHhHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56778888898888888 36778888888899999988876543
No 171
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=25.69 E-value=89 Score=28.03 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=11.8
Q ss_pred hhhhhHHHHHHHHHH
Q 006760 7 RADNCGLRAENDKIR 21 (632)
Q Consensus 7 R~eN~~Lr~ENekLr 21 (632)
-.||..|+.|.+-||
T Consensus 23 ~~e~~~L~eEI~~Lr 37 (86)
T PF12711_consen 23 EEENEALKEEIQLLR 37 (86)
T ss_pred HHHHHHHHHHHHHHH
Confidence 357788888888888
No 172
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=25.66 E-value=36 Score=31.15 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=22.9
Q ss_pred eeeeecCCchhhhhhccCCCCcchhh
Q 006760 449 TTFWLPIPPQNVFNFFKDERTRPQWD 474 (632)
Q Consensus 449 tS~wLPvpp~~vFdFLRde~~R~eWD 474 (632)
.|+.++.||+.||+|+.|...-.+|.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~~~~~~ 28 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDNLERLT 28 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcchHHhcC
Confidence 57789999999999999988887776
No 173
>COG5570 Uncharacterized small protein [Function unknown]
Probab=25.56 E-value=1.1e+02 Score=25.23 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhh
Q 006760 25 IAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSS 71 (632)
Q Consensus 25 ~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~ 71 (632)
..+.|||..+.| .+- .--.|.-.--||||||+++.+
T Consensus 19 ~ei~ea~n~Ps~---dd~--------~i~eLKRrKL~lKeeIEkLka 54 (57)
T COG5570 19 REIQEAMNSPSS---DDL--------AIRELKRRKLRLKEEIEKLKA 54 (57)
T ss_pred HHHHHHhcCCCc---chH--------HHHHHHHHHHHHHHHHHHHhc
Confidence 458899976554 332 223355566678999999876
No 174
>PHA03155 hypothetical protein; Provisional
Probab=25.19 E-value=73 Score=29.99 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Q 006760 12 GLRAENDKIRCENIAIREALKNVI 35 (632)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal~n~~ 35 (632)
.|-+|..||+-||..||..|+...
T Consensus 12 eLaaeL~kL~~ENK~LKkkl~~~~ 35 (115)
T PHA03155 12 ELEKELQKLKIENKALKKKLLQHG 35 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC
Confidence 478899999999999999997654
No 175
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.15 E-value=52 Score=26.86 Aligned_cols=23 Identities=30% Similarity=0.193 Sum_probs=16.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 006760 6 ERADNCGLRAENDKIRCENIAIR 28 (632)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lr 28 (632)
-|.++..++.|.+++++|+.++|
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 35667777777777777776654
No 176
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=25.09 E-value=33 Score=27.10 Aligned_cols=8 Identities=75% Similarity=1.298 Sum_probs=6.1
Q ss_pred hhHHHHHH
Q 006760 351 FGADRWLA 358 (632)
Q Consensus 351 fGA~RWla 358 (632)
-||+|||+
T Consensus 38 ~garrwl~ 45 (49)
T PF07151_consen 38 SGARRWLA 45 (49)
T ss_pred hhhhHHHh
Confidence 37888876
No 177
>PF05864 Chordopox_RPO7: Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7); InterPro: IPR008448 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide sequences. DNA-dependent RNA polymerase catalyses the transcription of DNA into RNA [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=24.44 E-value=66 Score=26.92 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhh
Q 006760 34 VICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSI 72 (632)
Q Consensus 34 ~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~ 72 (632)
.+|..||. |+|.|--+|-++-..||+=+..++..
T Consensus 5 lvCSTCGr-----DlSeeRy~Lli~~~~Lk~Vl~~v~n~ 38 (63)
T PF05864_consen 5 LVCSTCGR-----DLSEERYRLLIKEMSLKKVLRTVKNS 38 (63)
T ss_pred eeecccCC-----cchHHHHHHHHHHhhHHHHHHHhhcc
Confidence 47999996 55677788999999999999887654
No 178
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=24.32 E-value=1.3e+02 Score=25.48 Aligned_cols=53 Identities=17% Similarity=0.425 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhh
Q 006760 11 CGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSS 71 (632)
Q Consensus 11 ~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~ 71 (632)
+.+|-+..+||.|..-+-.|++-.+-.+|.. ..-|++.-.---||+++.++..
T Consensus 7 aeirl~~arLrqeH~D~DaaInAmi~~~cD~--------L~iqRmKkKKLAlKDki~~lED 59 (67)
T COG5481 7 AEIRLTLARLRQEHADFDAAINAMIATGCDA--------LRIQRMKKKKLALKDKITKLED 59 (67)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhCCcH--------HHHHHHHHHHHhHHHHHHHHHH
Confidence 3488888999999998888887777777763 4667777777778999988764
No 179
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=24.24 E-value=71 Score=28.68 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=19.2
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHhC
Q 006760 2 KAQHERADNCGLRAENDKIRCENIAIREALKN 33 (632)
Q Consensus 2 K~q~eR~eN~~Lr~ENekLr~EN~~lreal~n 33 (632)
|.++-+.+|..|.+||+.|+.|=..-...++|
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556777777777777775554445543
No 180
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=24.19 E-value=95 Score=28.94 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCC
Q 006760 11 CGLRAENDKIRCENIAIREALKNV 34 (632)
Q Consensus 11 ~~Lr~ENekLr~EN~~lreal~n~ 34 (632)
..|-.||-.|+-||..||+.|...
T Consensus 32 ~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 32 AELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446677888888888888888754
No 181
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=23.77 E-value=48 Score=29.92 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=25.4
Q ss_pred eeeeeecCCchhhhhhccCCCCcchhhh
Q 006760 448 ATTFWLPIPPQNVFNFFKDERTRPQWDV 475 (632)
Q Consensus 448 ~tS~wLPvpp~~vFdFLRde~~R~eWD~ 475 (632)
..++.++.||++||+.+.|..+..+|--
T Consensus 4 ~~~i~i~a~~e~Vw~~~td~~~~~~W~~ 31 (145)
T cd08898 4 ERTILIDAPRERVWRALTDPEHFGQWFG 31 (145)
T ss_pred EEEEEecCCHHHHHHHhcChhhhhhccc
Confidence 4678899999999999999999999963
No 182
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=23.63 E-value=3.1e+02 Score=24.33 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=40.7
Q ss_pred hhhhhhHHHHHHHHHHHH---HHHHHHHHhCCC-CCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhh
Q 006760 6 ERADNCGLRAENDKIRCE---NIAIREALKNVI-CPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSI 72 (632)
Q Consensus 6 eR~eN~~Lr~ENekLr~E---N~~lreal~n~~-C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~ 72 (632)
.+.--..|.+|-.+|+.. -..+|.||.++. ++.+-.+..+..++..-+.|..|=|-|..|+-++-..
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~ 76 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQK 76 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445677777666542 244555555532 2323233333455677888999999999998876543
No 183
>PHA03155 hypothetical protein; Provisional
Probab=23.39 E-value=32 Score=32.28 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=19.8
Q ss_pred CCCchhHHHHHHhhhccHHHHHH
Q 006760 46 EDSYFDEQKLRMENAQLKEELDR 68 (632)
Q Consensus 46 ~~~~~eeq~Lr~ENArLk~El~r 68 (632)
+|+..|.|+|++||-.||.-+.+
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 46778999999999999998853
No 184
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.85 E-value=89 Score=26.60 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=13.1
Q ss_pred HHHhhhccHHHH------HHHhhhhhhccC
Q 006760 55 LRMENAQLKEEL------DRVSSIAAKYIG 78 (632)
Q Consensus 55 Lr~ENArLk~El------~r~~~~~~k~~g 78 (632)
|..||.+|+.|+ +|+..+|.+.+|
T Consensus 43 l~~en~~L~~ei~~l~~~~rIe~~Ar~~lg 72 (85)
T TIGR02209 43 LQKEWRDLQLEVAELSRHERIEKIAKKQLG 72 (85)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcC
Confidence 444555555554 455566776654
No 185
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=22.77 E-value=46 Score=30.80 Aligned_cols=27 Identities=30% Similarity=0.753 Sum_probs=24.9
Q ss_pred eeeeecCCchhhhhhccCCCCcchhhh
Q 006760 449 TTFWLPIPPQNVFNFFKDERTRPQWDV 475 (632)
Q Consensus 449 tS~wLPvpp~~vFdFLRde~~R~eWD~ 475 (632)
+++-++.||++||+.+.|..+-.+|.-
T Consensus 5 ~~~~i~ap~e~Vw~~~tD~~~~~~w~~ 31 (146)
T cd07824 5 TVWRIPAPPEAVWDVLVDAESWPDWWP 31 (146)
T ss_pred EEEEecCCHHHHHHHHhChhhcchhhh
Confidence 677789999999999999999999985
No 186
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=22.57 E-value=1.1e+02 Score=26.52 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=20.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Q 006760 7 RADNCGLRAENDKIRCENIAIREALK 32 (632)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~ 32 (632)
..+|..|+.|++.|+.|+..++..+.
T Consensus 42 ~keNieLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 42 LKENIELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888888777664
No 187
>PF11454 DUF3016: Protein of unknown function (DUF3016); InterPro: IPR021557 This is a bacterial family of uncharacterised proteins.
Probab=22.52 E-value=1.1e+02 Score=29.78 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=32.3
Q ss_pred CceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHHHHHHhh
Q 006760 319 GYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCERFACL 370 (632)
Q Consensus 319 G~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~cerla~l 370 (632)
|-.+|+|.+=-.|-|-. +--.+.-.| -+||+.+|.+|.+.+|.-
T Consensus 2 g~V~V~w~dP~~ftD~~-------~s~~~~~~~-~~~~~~~L~~~~~~la~~ 45 (141)
T PF11454_consen 2 GEVKVTWQDPEKFTDIR-------PSNGSQSRY-RERVFAQLTKHFQKLAAK 45 (141)
T ss_pred CeeEEEecCcccccccc-------cCCCccccc-HHHHHHHHHHHHHHHHHh
Confidence 66899999877665544 222334455 799999999999999873
No 188
>PRK03918 chromosome segregation protein; Provisional
Probab=21.90 E-value=1.9e+02 Score=34.85 Aligned_cols=13 Identities=31% Similarity=0.710 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCC
Q 006760 33 NVICPSCGGPPVT 45 (632)
Q Consensus 33 n~~C~~CGgp~~~ 45 (632)
.+.||.|+.|...
T Consensus 435 ~~~Cp~c~~~L~~ 447 (880)
T PRK03918 435 KGKCPVCGRELTE 447 (880)
T ss_pred CCCCCCCCCcCCc
Confidence 3689999998754
No 189
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=21.79 E-value=44 Score=31.60 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=19.2
Q ss_pred CCchhHHHHHHhhhccHHHHHH
Q 006760 47 DSYFDEQKLRMENAQLKEELDR 68 (632)
Q Consensus 47 ~~~~eeq~Lr~ENArLk~El~r 68 (632)
|+..|.|+|.+||-.||.-+.+
T Consensus 7 eLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 7 ELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4567899999999999999876
No 190
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=21.74 E-value=1.1e+02 Score=30.54 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHh
Q 006760 11 CGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVS 70 (632)
Q Consensus 11 ~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~ 70 (632)
..|+.||++|+.|+..+++.. .+|..||.+|+.++.-+.
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~---------------------e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRN---------------------EELEKELEKLRQRLSTIE 138 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 356778888888888887765 348888888888887543
No 191
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=21.30 E-value=47 Score=29.53 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=22.6
Q ss_pred eeeecCCchhhhhhccCCCCcchhh
Q 006760 450 TFWLPIPPQNVFNFFKDERTRPQWD 474 (632)
Q Consensus 450 S~wLPvpp~~vFdFLRde~~R~eWD 474 (632)
+.-++.||++||+.|-|..+..+|.
T Consensus 5 ~~~i~ap~e~Vw~~~td~~~~~~W~ 29 (136)
T cd08893 5 VTYIRATPEKVWQALTDPEFTRQYW 29 (136)
T ss_pred EEEecCCHHHHHHHHcCchhhhhee
Confidence 4567999999999999999999995
No 192
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=21.21 E-value=2.3e+02 Score=23.99 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=16.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhC
Q 006760 7 RADNCGLRAENDKIRCENIAIREALKN 33 (632)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n 33 (632)
+.+-..+++|.++++.||.+|+..+..
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666665543
No 193
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=21.07 E-value=1.4e+02 Score=24.52 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006760 12 GLRAENDKIRCENIAIRE 29 (632)
Q Consensus 12 ~Lr~ENekLr~EN~~lre 29 (632)
.|..||+.|+.++..|++
T Consensus 37 ~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 37 ELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 194
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=21.04 E-value=85 Score=24.32 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCC
Q 006760 22 CENIAIREALKNVICPSCGGPPV 44 (632)
Q Consensus 22 ~EN~~lreal~n~~C~~CGgp~~ 44 (632)
+|=..-=-+|.+..||.||.|.+
T Consensus 6 ~~~LL~G~~ML~~~Cp~C~~PL~ 28 (41)
T PF06677_consen 6 GEYLLQGWTMLDEHCPDCGTPLM 28 (41)
T ss_pred HHHHHHhHhHhcCccCCCCCeeE
Confidence 33333345678889999999875
No 195
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=21.02 E-value=2e+02 Score=29.61 Aligned_cols=39 Identities=36% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhhhh
Q 006760 15 AENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIAA 74 (632)
Q Consensus 15 ~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~~ 74 (632)
+||++|+.+-..+.+.+ .+|+.||-.|++-.+.+..++.
T Consensus 125 ~ENe~Lh~~ie~~~eEi---------------------~~lk~en~~L~elae~~~~la~ 163 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEI---------------------AKLKEENEELKELAEHVQYLAE 163 (200)
T ss_dssp HHHHHHHHHHHHHHHHH---------------------HHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
No 196
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=20.73 E-value=49 Score=27.01 Aligned_cols=16 Identities=44% Similarity=0.677 Sum_probs=14.0
Q ss_pred HHHHHhhhccHHHHHH
Q 006760 53 QKLRMENAQLKEELDR 68 (632)
Q Consensus 53 q~Lr~ENArLk~El~r 68 (632)
+++|.||.+||.|++|
T Consensus 2 ~~~~~~veqLr~el~~ 17 (57)
T cd00068 2 DQLKKEVEQLRKELSR 17 (57)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 5789999999999884
No 197
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=20.28 E-value=1e+02 Score=28.64 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006760 12 GLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal 31 (632)
.+++||++|+++|..+++.+
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei 80 (117)
T COG2919 61 AQQAELEKLSARNTALEAEI 80 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666665554444
No 198
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=20.17 E-value=35 Score=24.46 Aligned_cols=14 Identities=29% Similarity=0.842 Sum_probs=7.9
Q ss_pred hCCCCCCCCCCCCC
Q 006760 32 KNVICPSCGGPPVT 45 (632)
Q Consensus 32 ~n~~C~~CGgp~~~ 45 (632)
++..|+.||+|+..
T Consensus 2 ~~rfC~~CG~~t~~ 15 (32)
T PF09297_consen 2 NHRFCGRCGAPTKP 15 (32)
T ss_dssp TTSB-TTT--BEEE
T ss_pred CCcccCcCCccccC
Confidence 35689999999753
Done!