Query 006760
Match_columns 632
No_of_seqs 169 out of 275
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 08:14:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 4.9E-20 1.7E-24 181.6 18.3 198 138-367 20-229 (231)
2 3p0l_A Steroidogenic acute reg 99.3 4.9E-11 1.7E-15 116.9 15.8 192 140-365 10-213 (221)
3 1em2_A MLN64 protein; beta bar 99.3 1.4E-10 4.7E-15 114.1 17.9 198 134-367 16-226 (229)
4 2pso_A STAR-related lipid tran 99.2 5.8E-11 2E-15 118.7 11.5 170 145-341 33-206 (237)
5 1ln1_A PC-TP, phosphatidylchol 99.0 2.7E-09 9.1E-14 103.1 14.8 149 199-367 52-210 (214)
6 1jss_A Stard4, cholesterol-reg 99.0 3.8E-09 1.3E-13 103.9 14.8 192 140-365 24-222 (224)
7 3fo5_A Thioesterase, adipose a 98.7 4.9E-08 1.7E-12 99.4 11.4 119 202-331 91-216 (258)
8 3qsz_A STAR-related lipid tran 98.6 4.3E-07 1.5E-11 86.2 14.8 150 200-366 28-179 (189)
9 2e3n_A Lipid-transfer protein 98.4 3.5E-06 1.2E-10 84.1 14.8 150 201-368 75-248 (255)
10 2r55_A STAR-related lipid tran 97.3 0.012 4.2E-07 57.3 17.8 197 386-628 17-227 (231)
11 3qsz_A STAR-related lipid tran 96.7 0.042 1.4E-06 51.6 15.3 169 414-628 3-178 (189)
12 3p0l_A Steroidogenic acute reg 96.2 0.16 5.6E-06 49.1 16.4 194 389-628 8-213 (221)
13 1jss_A Stard4, cholesterol-reg 96.1 0.025 8.7E-07 55.2 10.5 189 393-628 26-222 (224)
14 2d4r_A Hypothetical protein TT 95.9 0.14 4.7E-06 44.0 12.9 141 203-368 6-146 (147)
15 1ln1_A PC-TP, phosphatidylchol 95.5 0.13 4.6E-06 48.9 12.4 169 412-628 26-208 (214)
16 2pso_A STAR-related lipid tran 95.3 0.24 8.4E-06 49.0 13.8 173 412-629 48-227 (237)
17 1em2_A MLN64 protein; beta bar 94.8 0.49 1.7E-05 45.9 14.2 193 391-628 21-224 (229)
18 3fo5_A Thioesterase, adipose a 93.6 0.26 8.9E-06 49.9 9.6 152 386-560 41-201 (258)
19 2j5u_A MREC protein; bacterial 93.1 0.026 9.1E-07 57.1 1.4 37 13-67 24-60 (255)
20 2jee_A YIIU; FTSZ, septum, coi 91.6 0.35 1.2E-05 41.3 6.2 52 11-76 23-78 (81)
21 1t17_A Conserved hypothetical 90.6 1.4 4.6E-05 39.4 9.7 141 202-367 5-145 (148)
22 3tfz_A Cyclase; helix-GRIP, BE 89.6 6.5 0.00022 36.2 13.8 143 202-369 8-162 (172)
23 3p9v_A Uncharacterized protein 88.9 2.6 9E-05 38.6 10.4 140 203-366 11-151 (161)
24 3tl1_A WHIE ORF VI, polyketide 88.1 7.2 0.00025 36.1 12.9 141 202-369 6-149 (159)
25 3tvq_A Multifunctional cyclase 86.1 16 0.00053 34.2 14.1 143 202-369 6-149 (169)
26 3ra3_B P2F; coiled coil domain 77.8 1.1 3.6E-05 30.2 1.7 17 53-69 3-19 (28)
27 1go4_E MAD1 (mitotic arrest de 75.7 5.8 0.0002 35.1 6.4 70 7-76 18-94 (100)
28 2e3n_A Lipid-transfer protein 75.3 2.2 7.5E-05 42.0 4.2 170 393-597 28-217 (255)
29 2yy0_A C-MYC-binding protein; 72.5 3.6 0.00012 32.2 3.9 24 8-31 26-49 (53)
30 1l8d_A DNA double-strand break 70.5 3.1 0.00011 36.3 3.5 11 34-44 48-58 (112)
31 3m91_A Proteasome-associated A 67.6 11 0.00038 29.4 5.6 43 7-70 8-50 (51)
32 2yy0_A C-MYC-binding protein; 67.5 4.9 0.00017 31.5 3.7 24 8-31 19-42 (53)
33 2j5u_A MREC protein; bacterial 65.4 3.1 0.00011 41.9 2.8 25 6-30 24-48 (255)
34 3m9b_A Proteasome-associated A 64.9 4.4 0.00015 41.1 3.7 39 12-71 58-96 (251)
35 1a93_B MAX protein, coiled coi 64.4 7.7 0.00026 28.0 3.8 29 4-32 3-31 (34)
36 3he5_B Synzip2; heterodimeric 63.2 17 0.0006 27.5 5.7 45 8-73 3-47 (52)
37 1ci6_A Transcription factor AT 61.5 13 0.00043 29.9 5.1 24 8-31 23-46 (63)
38 3m48_A General control protein 60.1 5 0.00017 28.7 2.2 22 53-74 10-31 (33)
39 3s9g_A Protein hexim1; cyclin 59.9 2.5 8.7E-05 37.2 0.8 51 11-68 40-90 (104)
40 2oa5_A Hypothetical protein BQ 59.1 12 0.0004 33.6 4.9 56 12-76 12-67 (110)
41 1t2k_D Cyclic-AMP-dependent tr 56.4 18 0.00062 28.5 5.2 23 9-31 23-45 (61)
42 1gd2_E Transcription factor PA 52.3 4.7 0.00016 33.3 1.2 18 9-26 51-68 (70)
43 3oja_A Leucine-rich immune mol 49.4 15 0.00052 39.3 5.0 24 49-72 441-464 (487)
44 1hjb_A Ccaat/enhancer binding 48.8 13 0.00045 31.9 3.5 27 7-33 49-75 (87)
45 2qpv_A Uncharacterized protein 48.4 7.7 0.00026 36.1 2.1 30 446-475 28-57 (156)
46 2pcs_A Conserved protein; stru 45.7 1.6E+02 0.0053 25.9 15.1 118 204-345 8-127 (162)
47 1uii_A Geminin; human, DNA rep 45.1 36 0.0012 29.1 5.5 22 54-75 57-78 (83)
48 3p51_A Uncharacterized protein 45.0 89 0.0031 28.7 8.9 112 203-333 6-118 (160)
49 1t2k_D Cyclic-AMP-dependent tr 44.5 17 0.00058 28.7 3.3 27 5-31 33-59 (61)
50 1ci6_A Transcription factor AT 44.3 17 0.00058 29.1 3.3 29 4-32 33-61 (63)
51 1deb_A APC protein, adenomatou 43.0 12 0.00042 29.2 2.1 23 54-76 14-36 (54)
52 1gu4_A CAAT/enhancer binding p 42.7 10 0.00036 31.9 1.9 26 7-32 49-74 (78)
53 1hjb_A Ccaat/enhancer binding 41.6 35 0.0012 29.3 5.0 13 62-74 62-74 (87)
54 1go4_E MAD1 (mitotic arrest de 39.8 12 0.00041 33.0 1.9 17 12-28 16-32 (100)
55 2d4r_A Hypothetical protein TT 39.8 6.9 0.00024 33.1 0.3 29 447-475 4-32 (147)
56 1t17_A Conserved hypothetical 38.4 15 0.0005 32.5 2.3 30 448-477 5-34 (148)
57 2dfs_A Myosin-5A; myosin-V, in 38.3 15 0.00052 44.2 3.0 57 7-73 990-1046(1080)
58 1t6f_A Geminin; coiled-coil, c 37.6 25 0.00085 25.6 2.9 11 19-29 25-35 (37)
59 1nlw_A MAD protein, MAX dimeri 35.9 32 0.0011 28.8 3.8 27 6-32 52-78 (80)
60 2ns9_A Hypothetical protein AP 35.6 9.4 0.00032 33.6 0.5 29 446-474 14-42 (157)
61 2pcs_A Conserved protein; stru 35.0 8.4 0.00029 34.4 0.1 28 447-474 5-32 (162)
62 1jnm_A Proto-oncogene C-JUN; B 34.1 44 0.0015 26.4 4.2 20 11-30 25-44 (62)
63 2leq_A Uncharacterized protein 33.8 18 0.00063 31.0 2.1 27 447-473 7-33 (146)
64 1nkp_B MAX protein, MYC proto- 33.7 40 0.0014 28.0 4.1 27 7-33 53-79 (83)
65 2jee_A YIIU; FTSZ, septum, coi 33.0 34 0.0011 29.1 3.5 13 7-19 33-45 (81)
66 2zxx_A Geminin; coiled-coil, c 32.5 77 0.0026 26.8 5.6 21 54-74 52-72 (79)
67 3q6a_A Uncharacterized protein 32.3 21 0.00072 31.0 2.3 27 448-474 4-30 (135)
68 3i00_A HIP-I, huntingtin-inter 32.2 54 0.0018 29.6 4.9 57 6-70 20-81 (120)
69 2wt7_A Proto-oncogene protein 32.0 78 0.0027 25.1 5.4 40 7-67 22-61 (63)
70 3ggn_A Uncharacterized protein 31.6 16 0.00053 32.9 1.3 30 446-475 5-34 (155)
71 1wlq_A Geminin; coiled-coil; 2 31.5 72 0.0024 27.3 5.2 20 55-74 50-69 (83)
72 1uii_A Geminin; human, DNA rep 31.4 41 0.0014 28.7 3.8 21 9-29 47-67 (83)
73 1deb_A APC protein, adenomatou 31.1 50 0.0017 25.8 3.8 20 13-32 8-27 (54)
74 2oxj_A Hybrid alpha/beta pepti 29.3 30 0.001 24.8 2.1 22 53-74 11-32 (34)
75 3po3_S Transcription elongatio 29.1 30 0.001 33.1 2.9 31 10-42 107-146 (178)
76 1jnm_A Proto-oncogene C-JUN; B 26.8 20 0.00068 28.4 1.0 26 6-31 34-59 (62)
77 2zxx_A Geminin; coiled-coil, c 26.5 38 0.0013 28.7 2.7 24 8-31 34-64 (79)
78 1x53_A Activator of 90 kDa hea 26.1 22 0.00074 31.4 1.2 27 448-474 14-40 (145)
79 3iqt_A Signal transduction his 26.0 31 0.0011 30.8 2.2 44 35-78 71-123 (123)
80 2wt7_B Transcription factor MA 25.7 1.2E+02 0.004 26.3 5.6 43 15-78 48-90 (90)
81 2jn6_A Protein CGL2762, transp 25.5 14 0.00049 30.7 -0.1 21 50-70 66-86 (97)
82 2le1_A Uncharacterized protein 25.4 33 0.0011 30.3 2.3 28 447-474 4-31 (151)
83 3tfz_A Cyclase; helix-GRIP, BE 25.3 25 0.00085 32.2 1.5 29 446-474 6-34 (172)
84 1xn6_A Hypothetical protein BC 24.9 21 0.00073 31.1 0.9 28 447-474 10-37 (143)
85 2w6b_A RHO guanine nucleotide 24.7 64 0.0022 25.6 3.4 21 11-31 13-33 (56)
86 1dh3_A Transcription factor CR 24.7 37 0.0013 26.5 2.2 22 51-72 30-51 (55)
87 2jn6_A Protein CGL2762, transp 24.6 3.5 0.00012 34.5 -4.1 19 8-26 66-84 (97)
88 1uo4_A General control protein 24.6 45 0.0015 24.0 2.3 22 53-74 11-32 (34)
89 2oqq_A Transcription factor HY 23.8 74 0.0025 23.9 3.5 27 7-33 16-42 (42)
90 2oto_A M protein; helical coil 23.6 1.1E+02 0.0038 28.1 5.7 20 9-28 23-42 (155)
91 3hnw_A Uncharacterized protein 23.6 1.1E+02 0.0036 28.2 5.4 26 6-31 73-98 (138)
92 2kew_A Uncharacterized protein 23.4 23 0.00078 31.7 0.8 27 447-473 12-38 (152)
93 2dgc_A Protein (GCN4); basic d 23.2 40 0.0014 27.0 2.2 23 51-73 38-60 (63)
94 2wvr_A Geminin; DNA replicatio 23.1 1E+02 0.0035 30.4 5.3 31 54-84 133-166 (209)
95 3ggn_A Uncharacterized protein 22.3 4E+02 0.014 23.4 12.4 134 203-366 8-142 (155)
96 1z94_A Conserved hypothetical 21.8 21 0.00071 30.8 0.2 26 449-474 7-32 (147)
97 3c3g_A Alpha/beta peptide with 21.7 55 0.0019 23.4 2.3 22 53-74 10-31 (33)
98 2wvr_A Geminin; DNA replicatio 20.6 1.3E+02 0.0043 29.7 5.4 22 54-75 126-147 (209)
99 1gd2_E Transcription factor PA 20.6 51 0.0017 27.1 2.3 17 51-67 51-67 (70)
100 3s9g_A Protein hexim1; cyclin 20.2 71 0.0024 28.2 3.2 16 13-28 70-85 (104)
101 2lcg_A Uncharacterized protein 20.1 24 0.00081 31.0 0.2 26 448-473 4-29 (142)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.84 E-value=4.9e-20 Score=181.56 Aligned_cols=198 Identities=17% Similarity=0.246 Sum_probs=156.9
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHH
Q 006760 138 DKSLMTDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDM 217 (632)
Q Consensus 138 ~k~~~~~lA~~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~ 217 (632)
+++.+.++|++||+||+++++.. ..|....+. +..++|.+... +....+-|..++|.+++.++++.
T Consensus 20 ~~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~~--------~gv~v~~~~~~-----~~~~~~~k~~~~v~~~~~~v~~~ 85 (231)
T 2r55_A 20 FQSMAAQMSEAVAEKMLQYRRDT-AGWKICREG--------NGVSVSWRPSV-----EFPGNLYRGEGIVYGTLEEVWDC 85 (231)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC-SSCEEEECC--------SSEEEEEEECS-----SSSSEEEEEEEEESSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC-CCCEEEEeC--------CCEEEEEEccC-----CCCCcEEEEEEEECCCHHHHHHH
Confidence 57889999999999999999754 789876432 22355533321 33357889999999999999999
Q ss_pred hCC-----chhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeee--cccccccceeeEEEEeeeeecCCeEEEEE
Q 006760 218 FMD-----CSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQ--VLSPVVPTREFYVLRYCQQIEQGSWAVVN 290 (632)
Q Consensus 218 lmD-----~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~--v~SPLVP~Re~~fLRyckql~~G~WaVvD 290 (632)
||+ +.+|-+.| .+++.++.++. .-.++| ++. .++++|++|||.++||+++.++|.|+|+.
T Consensus 86 l~~~d~~~r~~Wd~~~----~~~~vle~i~~--------~~~i~~-~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~ 152 (231)
T 2r55_A 86 VKPAVGGLRVKWDENV----TGFEIIQSITD--------TLCVSR-TSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNA 152 (231)
T ss_dssp HCC--CCSHHHHCTTC----SEEEEEEECSS--------SEEEEE-EECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEE
T ss_pred HHhhCcchhhhhcccc----ceeEEEEEcCC--------CEEEEE-EEeccccCCccCCCeEEEEEEEEEcCCCEEEEEE
Confidence 977 88998743 36676666641 123444 333 45579999999999999999999999999
Q ss_pred EecCCCC--C-CCccceeccCCcceEEeCC--CCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHHH
Q 006760 291 VSYDSPQ--F-SSQCQSHRFPSGCLIQDLP--NGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCE 365 (632)
Q Consensus 291 vSld~~~--~-~~~~r~rrlPSGclIq~~~--nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~ce 365 (632)
.|++... + ..++|++..+|||+||+++ +|.|+|||+.|++..-+. | +.++++.++.++.+|++.|+++|+
T Consensus 153 ~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~i--P---~~lvn~~~~~~~~~~~~~Lr~~~~ 227 (231)
T 2r55_A 153 THVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGYL--P---QNVVDSFFPRSMTRFYANLQKAVK 227 (231)
T ss_dssp EECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSSC--C---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCCc--c---HHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9998542 2 2469999999999999998 789999999999998765 3 688899999999999999999998
Q ss_pred HH
Q 006760 366 RF 367 (632)
Q Consensus 366 rl 367 (632)
.+
T Consensus 228 ~~ 229 (231)
T 2r55_A 228 QF 229 (231)
T ss_dssp GG
T ss_pred Hh
Confidence 54
No 2
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.28 E-value=4.9e-11 Score=116.87 Aligned_cols=192 Identities=17% Similarity=0.235 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCceeecC--CCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHH
Q 006760 140 SLMTDIAANAMEELLRLLQTNEPLWMKSS--TDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDM 217 (632)
Q Consensus 140 ~~~~~lA~~Am~El~~la~~~eplWi~~~--~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~ 217 (632)
--...+|++||+|++++.+ ++.-|.... +.|-. -|.+.+| + .| -.=|..++|...+.++.+.
T Consensus 10 ~~y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~gv~-----vy~~~~~---~----~g---~~~k~~~~v~~~~~~v~~~ 73 (221)
T 3p0l_A 10 LAYLQQGEEAMQKALGILS-NQEGWKKESQQDNGDK-----VMSKVVP---D----VG---KVFRLEVVVDQPMERLYEE 73 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SCTTCEEEEECTTSCE-----EEEEECS---S----SC---EEEEEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCCeEeeecCCCcE-----EEEEEcC---C----Cc---eEEEEEEEEcCCHHHHHHH
Confidence 3346899999999999976 345797652 23322 2333332 1 12 3458899999999999999
Q ss_pred h-CC---chhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeee-cccccccceeeEEEEeeeeecCCeEEEEEEe
Q 006760 218 F-MD---CSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQ-VLSPVVPTREFYVLRYCQQIEQGSWAVVNVS 292 (632)
Q Consensus 218 l-mD---~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~-v~SPLVP~Re~~fLRyckql~~G~WaVvDvS 292 (632)
| +| +.+|-. .+...+||..-.. .-.+.|.... .+.++++.|||.++||.++. +|.++|+-.|
T Consensus 74 l~~d~~~r~~Wd~-------~~~~~~vle~~~~-----~t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~S 140 (221)
T 3p0l_A 74 LVERMEAMGEWNP-------NVKEIKVLQKIGK-----DTFITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMA 140 (221)
T ss_dssp HTTTGGGTTTSCT-------TCSEEEEEEECSS-----SEEEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEE
T ss_pred HHhccchhhhcCc-------chheEEEEEecCC-----CeEEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEe
Confidence 8 46 467776 5555556654322 2246664432 23568999999999999985 6889999999
Q ss_pred cCCCC--C-CCccceeccCCcceEEeCCCC--ceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHHH
Q 006760 293 YDSPQ--F-SSQCQSHRFPSGCLIQDLPNG--YSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCE 365 (632)
Q Consensus 293 ld~~~--~-~~~~r~rrlPSGclIq~~~nG--~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~ce 365 (632)
++... + ..++|...+++|++|++.++| .|+|||+-|++..-+. | +.+++..+.-+.-.++..|+++|+
T Consensus 141 v~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~i--P---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 141 TDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWL--P---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSSC--C---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCCC--C---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87542 2 347999999999999999988 9999999999887664 2 355666666666678888888887
No 3
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.26 E-value=1.4e-10 Score=114.11 Aligned_cols=198 Identities=12% Similarity=0.167 Sum_probs=140.3
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhccCCCCceeecCC--CCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEech
Q 006760 134 LSDMDKSLMTDIAANAMEELLRLLQTNEPLWMKSST--DGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNG 211 (632)
Q Consensus 134 ~~~~~k~~~~~lA~~Am~El~~la~~~eplWi~~~~--~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~ 211 (632)
+++.| ...++.+++|++++.++... .--|-...+ .|-. -|.+..+. .|. .-|..++|...+
T Consensus 16 l~~~~-~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g~~-----vy~~~~~~-------~g~---~~k~~~~v~~~~ 78 (229)
T 1em2_A 16 FSAQE-REYIRQGKEATAVVDQILAQ-EENWKFEKNNEYGDT-----VYTIEVPF-------HGK---TFILKTFLPCPA 78 (229)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTCCE-----EEEEEETT-------TEE---EEEEEEEESSCH
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCCCE-----EEEEecCC-------CCc---eEEEEEEecCCH
Confidence 44555 66789999999999999863 346966532 2211 23332210 121 348889999999
Q ss_pred hhHH-HHhCCc---hhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecc--cccccceeeEEEEeeeeecCCe
Q 006760 212 LALV-DMFMDC---SKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVL--SPVVPTREFYVLRYCQQIEQGS 285 (632)
Q Consensus 212 ~~LV-e~lmD~---~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~--SPLVP~Re~~fLRyckql~~G~ 285 (632)
..+. +.|.|. .+|-. .+...+||..-..+ + . ++-++..+ .++++.|||.++|++++. ++.
T Consensus 79 ~~v~~~~~~d~~~r~~Wd~-------~~~~~~vle~~~~~----t-~-I~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~ 144 (229)
T 1em2_A 79 ELVYQEVILQPERMVLWNK-------TVTACQILQRVEDN----T-L-ISYDVSAGAAGGVVSPRDFVNVRRIERR-RDR 144 (229)
T ss_dssp HHHHHHTTTCHHHHTTTCT-------TEEEEEEEEEETTT----E-E-EEEEEECCBTTTTBCCEEEEEEEEEEEC-SSE
T ss_pred HHHHHHHHhCccchhhccc-------ccceEEEEEecCCC----e-E-EEEEEecCcCCCCcCCCeeEEEEEEEEc-CCE
Confidence 9998 777665 45655 44444555443221 2 2 34456655 578999999999999997 567
Q ss_pred EEEEEEecCCCC-C--CCccceeccCCcceEEeCC--CCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHH
Q 006760 286 WAVVNVSYDSPQ-F--SSQCQSHRFPSGCLIQDLP--NGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATL 360 (632)
Q Consensus 286 WaVvDvSld~~~-~--~~~~r~rrlPSGclIq~~~--nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatL 360 (632)
++|+-.|++... + ..++|+...++|++|++++ +|.|+|||+-|++..-+. | +.++++.+.-+.-..+..|
T Consensus 145 ~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~i--P---~~l~n~~~~~~~~~~~~~L 219 (229)
T 1em2_A 145 YLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGRL--P---RYLIHQSLAATMFEFAFHL 219 (229)
T ss_dssp EEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSSS--C---HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCCC--C---HHHHHHHHHHHHHHHHHHH
Confidence 999999997653 2 2469999999999999987 678999999999887654 3 5677777777777888889
Q ss_pred HHHHHHH
Q 006760 361 QRMCERF 367 (632)
Q Consensus 361 qR~cerl 367 (632)
..+|+.+
T Consensus 220 r~~~~~~ 226 (229)
T 1em2_A 220 RQRISEL 226 (229)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8888765
No 4
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.20 E-value=5.8e-11 Score=118.74 Aligned_cols=170 Identities=15% Similarity=0.205 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHH-HHhCCchh
Q 006760 145 IAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALV-DMFMDCSK 223 (632)
Q Consensus 145 lA~~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LV-e~lmD~~~ 223 (632)
+++.++.|+++.+.....-|-...+.. . .++|.+... .|...-.=|..++|...+.+++ ++|.|+.+
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~~~-------g-i~V~~k~~~----~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~ 100 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSSTD-------N-TDLAFKKVG----DGNPLKLWKASVEVEAPPSVVLNRVLRERHL 100 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECCSS-------S-CEEEEECCC----SSCCCCEEEEEEEESSCHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCC-------C-eEEEEEEcC----CCCCcEEEEEEEEEcCChHHHHHHHHhhhhh
Confidence 445677777776654455697664321 1 134422221 2333345677888877777764 78999999
Q ss_pred hhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeee-ecCCeEEEEEEecCCCC--CCC
Q 006760 224 WVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQ-IEQGSWAVVNVSYDSPQ--FSS 300 (632)
Q Consensus 224 W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckq-l~~G~WaVvDvSld~~~--~~~ 300 (632)
|-. .+...+||..-. +.-.++|..+..+.| ++.|||.++||.++ +++|.++|+-.|++... +..
T Consensus 101 Wd~-------~~~~~~vle~id-----~~~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~~g 167 (237)
T 2pso_A 101 WDE-------DFVQWKVVETLD-----RQTEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLLG 167 (237)
T ss_dssp TCT-------TBCCCEEEEEEE-----TTEEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCCCS
T ss_pred HHh-------hhceEEEEEEcC-----CCcEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCCCC
Confidence 988 444455554322 223677888877766 79999999999986 78999999999998542 235
Q ss_pred ccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhh
Q 006760 301 QCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLY 341 (632)
Q Consensus 301 ~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~ly 341 (632)
++|+..+++|++|+++.+|.|+|||+-|++..- . +|.-+
T Consensus 168 ~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~G-~-iP~~l 206 (237)
T 2pso_A 168 GVRAVVMDSQYLIEPCGSGKSRLTHICRIDLKG-H-SPEWY 206 (237)
T ss_dssp SEECCEEEEEEEEEECSTTCEEEEEEEEECCSS-S-CTTTT
T ss_pred cEEEEEeccEEEEEECCCCCEEEEEEEEeCCCC-C-chHHH
Confidence 699999999999999999999999999999874 4 55544
No 5
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=99.04 E-value=2.7e-09 Score=103.08 Aligned_cols=149 Identities=21% Similarity=0.308 Sum_probs=118.9
Q ss_pred eeecceeeEE-echhhHHHHhCC---chhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEE
Q 006760 199 ESSRDSGVVI-MNGLALVDMFMD---CSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYV 274 (632)
Q Consensus 199 EASR~~gvV~-m~~~~LVe~lmD---~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~f 274 (632)
-.-|..++|. ..+.++.+.|+| ..+|.. .+...+||.. +|. .++|.++..|.|+ ..|||.+
T Consensus 52 ~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~-------~~~~~~vle~------~~~-~i~~~~~~~p~p~-~~RD~v~ 116 (214)
T 1ln1_A 52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQ-------YVKELYEQEC------NGE-TVVYWEVKYPFPM-SNRDYVY 116 (214)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCT-------TEEEEEEEEE------TTE-EEEEEEECCCTTS-CCEEEEE
T ss_pred EEEEEEEEECCCCHHHHHHHHcCHHHHHHHHH-------HHhhEEEecc------CCC-EEEEEEEEcCCCC-CCceEEE
Confidence 3568999995 999999999999 677877 6677778764 332 4789999999886 9999999
Q ss_pred EEeeeeec-CC--eEEEEEEecCCCC--C-CCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhccc
Q 006760 275 LRYCQQIE-QG--SWAVVNVSYDSPQ--F-SSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSG 348 (632)
Q Consensus 275 LRyckql~-~G--~WaVvDvSld~~~--~-~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg 348 (632)
+|+++.++ +| .|+|+-.|++... + ..++|.+.+++|++|++..+|.|+||++-|++..-+ +|.- +++..
T Consensus 117 ~~~~~~~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~G~--iP~~---l~n~~ 191 (214)
T 1ln1_A 117 LRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQ--IPSW---LINWA 191 (214)
T ss_dssp EEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSC--CCHH---HHHHH
T ss_pred EEEEEecccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCCCc--ccHH---HHHHH
Confidence 99999875 66 5999999987542 2 346899999999999999999999999999998743 4443 44445
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 006760 349 MAFGADRWLATLQRMCERF 367 (632)
Q Consensus 349 ~afGA~RWlatLqR~cerl 367 (632)
..-++..++..|+++|+..
T Consensus 192 ~~~~~~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 192 AKNGVPNFLKDMARACQNY 210 (214)
T ss_dssp HHTHHHHHHHHHHHHHHTC
T ss_pred HHHHhHHHHHHHHHHHHhc
Confidence 5566778888998888743
No 6
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=99.01 E-value=3.8e-09 Score=103.93 Aligned_cols=192 Identities=14% Similarity=0.167 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCceeecCCCCccccChHHHhhhCCCCcCCCCCCCCeeeeecceeeEEechhhHHHHhC
Q 006760 140 SLMTDIAANAMEELLRLLQTNEPLWMKSSTDGRDILDLDSYERMFPRANSHLKNPNVRTESSRDSGVVIMNGLALVDMFM 219 (632)
Q Consensus 140 ~~~~~lA~~Am~El~~la~~~eplWi~~~~~g~evLn~~eY~~~F~~~~~~~~~~g~~~EASR~~gvV~m~~~~LVe~lm 219 (632)
..+.+.+.++|.++..+. +.-|-...+.. . .++|.+.. .+...-.-|..++|...+..|.+.|+
T Consensus 24 ~~~~~~~~e~l~~~~~~~---~~~W~~~~~~~-------g-v~vy~~~~-----~~~~~~~~k~~~~v~~~~~~v~~~l~ 87 (224)
T 1jss_A 24 ASISTKLQNTLIQYHSIE---EDEWRVAKKAK-------D-VTVWRKPS-----EEFNGYLYKAQGVMDDVVNNVIDHIR 87 (224)
T ss_dssp CTHHHHHHHHHHHHTTSC---GGGCEEEEEET-------T-EEEEEEEC-----SSSSSEEEEEEEEESSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhC---CCCCEEEEECC-------C-EEEEEEec-----cCCCceEEEEEEEEeCCHHHHHHHHh
Confidence 335666666666655543 55696543211 1 23442211 12222345888999999999999999
Q ss_pred Cch---hhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecc-cccccceeeEEEEeeeeecCCeEEEEEEecCC
Q 006760 220 DCS---KWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVL-SPVVPTREFYVLRYCQQIEQGSWAVVNVSYDS 295 (632)
Q Consensus 220 D~~---~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~-SPLVP~Re~~fLRyckql~~G~WaVvDvSld~ 295 (632)
|.. +|-. .+...++|..-. +.-.+.|.-+.-+ -|++..|||.++|+.++.++| ++|+-+|++.
T Consensus 88 d~~~r~~Wd~-------~~~~~~vle~id-----~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~h 154 (224)
T 1jss_A 88 PGPWRLDWDR-------LMTSLDVLEHFE-----ENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEW 154 (224)
T ss_dssp SSTTHHHHCS-------SEEEEEEEEECS-----TTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCC
T ss_pred Cccccccccc-------ceeeEEEEEEcC-----CCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeec
Confidence 965 7877 445555555422 2235666666543 457999999999999999877 7889999985
Q ss_pred CC-CCCccceeccCCcceEEeCCCC--ceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHHHHH
Q 006760 296 PQ-FSSQCQSHRFPSGCLIQDLPNG--YSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQRMCE 365 (632)
Q Consensus 296 ~~-~~~~~r~rrlPSGclIq~~~nG--~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR~ce 365 (632)
.. +..++|....++|++|+++++| .|+|||+-|++..-+. | +.+++..+.-+-..++..|+.+|+
T Consensus 155 p~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~i--P---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 155 SETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMI--P---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp CCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSCC--C---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCCc--c---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 43 2357999999999999999875 8999999999988765 2 356666666666778888887765
No 7
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.72 E-value=4.9e-08 Score=99.38 Aligned_cols=119 Identities=12% Similarity=0.135 Sum_probs=91.3
Q ss_pred cceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccc--cccceeeEEEEeee
Q 006760 202 RDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSP--VVPTREFYVLRYCQ 279 (632)
Q Consensus 202 R~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SP--LVP~Re~~fLRyck 279 (632)
|..++|...+..|.+.|+|.+...+-.+.+ ..++.++-|+. + .++| ++..|+| ++++|||..|||.+
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~-~~~~vle~id~------~---~ivY-~~~~p~~~~~v~~RDFV~lr~~r 159 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKHY-RSVELVQQVDE------D---DAIY-HVTSPALGGHTKPQDFVILASRR 159 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTTC-CEEEEEEEEET------T---EEEE-EEEECCCTTCSSCEEEEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhhc-cEEEEEEEcCC------C---eEEE-EEecCCccCCCCCCEEEEEEEEE
Confidence 788899999999999999886444333322 33444444431 2 4677 6777886 79999999999998
Q ss_pred e-ecCCe-EEEEEEecCCC--CC-CCccceeccCCcceEEeCCCCceEEEEEEeeee
Q 006760 280 Q-IEQGS-WAVVNVSYDSP--QF-SSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEI 331 (632)
Q Consensus 280 q-l~~G~-WaVvDvSld~~--~~-~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~ 331 (632)
+ ..+|. ++|+-+|++.- ++ ..++|...+|+|++|++.++|.|+||++-|++-
T Consensus 160 ~~~~~G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp 216 (258)
T 3fo5_A 160 KPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP 216 (258)
T ss_dssp CCSSTTCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG
T ss_pred eccCCCCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC
Confidence 7 44775 99999998743 22 347999999999999999999999999988873
No 8
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.64 E-value=4.3e-07 Score=86.21 Aligned_cols=150 Identities=13% Similarity=0.050 Sum_probs=110.1
Q ss_pred eecceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeee
Q 006760 200 SSRDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQ 279 (632)
Q Consensus 200 ASR~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyck 279 (632)
.=|..++|...+.++.+.|+|.+...+.-| .+...+||.. . + + -.++|.++..|-| +..|||.++|+.+
T Consensus 28 ~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~----~~~~~~vle~-~-~---~-~~i~y~~~~~p~p-~~~RD~v~~~~~~ 96 (189)
T 3qsz_A 28 EFRGEVRLKAAADDVVKVLRDANAFRQWMP----DVAASELLKA-T-D---T-EQYHYLDNSAPWP-VSNRDGVYHFTYE 96 (189)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTST----TEEEEEEEEE-C-S---S-EEEEEEEECCSSS-CCCEEEEEEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHhHHHhhhHHH----hcCEEEEEee-c-C---C-ceEEEEEeecCCC-cCCcceEEEEEEE
Confidence 467889999999999999999766555444 4566677776 2 1 2 3567888887766 7899999999999
Q ss_pred eecCCeEEEEEEecC-CCCC-CCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHH
Q 006760 280 QIEQGSWAVVNVSYD-SPQF-SSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWL 357 (632)
Q Consensus 280 ql~~G~WaVvDvSld-~~~~-~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWl 357 (632)
+..+|...|+=.+.. ..++ ..++|.+..++|++|++ .+|.|+||++-|++..-+ +|. -+++..+.-++-..+
T Consensus 97 ~~~~g~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G~--iP~---~lvn~~~~~~~~~~l 170 (189)
T 3qsz_A 97 KAGDGAITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGGS--IPS---WLANQTVVETPFGTL 170 (189)
T ss_dssp ECTTSCEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCSS--SCH---HHHHHTTTHHHHHHH
T ss_pred ECCCCeEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCCC--CCH---HHHHHHHHHHHHHHH
Confidence 987887655433321 1122 24689999999999999 999999999999987644 332 345555555666788
Q ss_pred HHHHHHHHH
Q 006760 358 ATLQRMCER 366 (632)
Q Consensus 358 atLqR~cer 366 (632)
..|.++|+.
T Consensus 171 ~~L~k~~~~ 179 (189)
T 3qsz_A 171 KALRSHLRQ 179 (189)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhh
Confidence 888888774
No 9
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.41 E-value=3.5e-06 Score=84.07 Aligned_cols=150 Identities=13% Similarity=0.284 Sum_probs=106.0
Q ss_pred ecceeeEE-echhhHHHHhCCc---hhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEE
Q 006760 201 SRDSGVVI-MNGLALVDMFMDC---SKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLR 276 (632)
Q Consensus 201 SR~~gvV~-m~~~~LVe~lmD~---~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLR 276 (632)
=|..+.+. ..+..+.+.|+|. .+|... +..++.++.|.. + + .+.|..+..|.|+ ..|||.++|
T Consensus 75 ~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~----~~~~~vle~i~~------~-~-~i~y~~~~~p~p~-s~RDfV~~r 141 (255)
T 2e3n_A 75 LKATHAVKGVTGHEVCNYFWNVDVRNDWETT----IENFHVVETLAD------N-A-IIIYQTHKRVWPA-SQRDVLYLS 141 (255)
T ss_dssp EEEEEEEETCCHHHHHHHHHCGGGHHHHCCS----EEEEEEEEEEET------T-E-EEEEEEECCCTTS-CCEEEEEEE
T ss_pred EEEEEEEcCCCHHHHHHHHhCcchHhhhhhh----cceeEEEEEcCC------C-C-EEEEEEeecCCCc-CCceeEEEE
Confidence 45556665 7789999999994 566662 344555554431 1 2 7889999998886 889999999
Q ss_pred eeeeec----C--CeEEEEEEecCCCC--C-CCccceec---cCCcceEEeCCC--------CceEEEEEEeeeecCCCc
Q 006760 277 YCQQIE----Q--GSWAVVNVSYDSPQ--F-SSQCQSHR---FPSGCLIQDLPN--------GYSKVTWVEHLEIEDRTP 336 (632)
Q Consensus 277 yckql~----~--G~WaVvDvSld~~~--~-~~~~r~rr---lPSGclIq~~~n--------G~skVtwVEH~e~d~~~~ 336 (632)
+.++.+ + +.|+|+..|++.-. + ..++|... +.+|++|++..+ +.|+|||+-|++..-+
T Consensus 142 ~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G~-- 219 (255)
T 2e3n_A 142 VIRKIPALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGW-- 219 (255)
T ss_dssp EEEEECCSSTTSCCEEEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSSC--
T ss_pred EEEeccccccCCCCEEEEEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCCc--
Confidence 999883 3 59999999998543 2 23588884 678999998733 5799999999988754
Q ss_pred cchhhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 006760 337 IHRLYQDLIQSGMAFGADRWLATLQRMCERFA 368 (632)
Q Consensus 337 vh~lyrpl~~Sg~afGA~RWlatLqR~cerla 368 (632)
+|. -+++.....+....+..|.++++...
T Consensus 220 iP~---~lvn~~~~~~~~~~l~~L~k~v~~~~ 248 (255)
T 2e3n_A 220 APA---SVLRAVAKREYPKFLKRFTSYVQEKT 248 (255)
T ss_dssp CCH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCH---HHHHHHHhccccHHHHHHHHHHHHhc
Confidence 333 24445555667778888888887543
No 10
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=97.27 E-value=0.012 Score=57.32 Aligned_cols=197 Identities=15% Similarity=0.159 Sum_probs=117.1
Q ss_pred CcchhhhHHHHHHHHHHHHhhhccCCCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhc-
Q 006760 386 SPDGKRSMMKLAQRMVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFF- 464 (632)
Q Consensus 386 ~~~GR~sllkLAqRM~~~F~~~v~~s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFL- 464 (632)
....+...+++|+..+..|-.-+.. ..+|..... .++|+|..+...+. + |.+. ++..-+++||+.||++|
T Consensus 17 ~~~~~~~y~~~a~~~~~~~l~~~~~--~~~W~~~~~--~~gv~v~~~~~~~~--~-~~~~--k~~~~v~~~~~~v~~~l~ 87 (231)
T 2r55_A 17 NLYFQSMAAQMSEAVAEKMLQYRRD--TAGWKICRE--GNGVSVSWRPSVEF--P-GNLY--RGEGIVYGTLEEVWDCVK 87 (231)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHC--CSSCEEEEC--CSSEEEEEEECSSS--S-SEEE--EEEEEESSCHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHHHHHHhcC--CCCCEEEEe--CCCEEEEEEccCCC--C-CcEE--EEEEEECCCHHHHHHHHH
Confidence 3445566999999999988876643 378987753 56899998876322 2 3444 44444599999999999
Q ss_pred -cCCCCcchhhhccCCCcceEEeeccCCCCCCceEEEEe-c---c--c-CCCCcEEEEEeeccCCcceEE-EEcccChhh
Q 006760 465 -KDERTRPQWDVLTNGNAVQEVAHIANGSNPGNCISVLR-A---I--N-TSQNNMLILQESCIDSSGSLV-VYCPVDLPA 535 (632)
Q Consensus 465 -Rde~~R~eWD~Ls~G~~vqe~~~Ia~g~~~gN~VSllr-~---~--~-~~~~~mliLQes~tD~sgS~v-VYAPVD~~~ 535 (632)
.|...|.+||.... ..+.+..|. .... |.+ . . . -+..+..+|.-...+.-|+++ +.-.||-+.
T Consensus 88 ~~d~~~r~~Wd~~~~--~~~vle~i~----~~~~--i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~~~ 159 (231)
T 2r55_A 88 PAVGGLRVKWDENVT--GFEIIQSIT----DTLC--VSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPL 159 (231)
T ss_dssp C--CCSHHHHCTTCS--EEEEEEECS----SSEE--EEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCCTT
T ss_pred hhCcchhhhhccccc--eeEEEEEcC----CCEE--EEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccCCC
Confidence 89999999997542 233444442 1222 344 1 1 1 234566666665555557775 577787653
Q ss_pred hhhhhcCCCCCCC--cccCCccEEcCCCCCCCCCCCCCCCCcCCCCCCCCCCceeEEeeehhhcC-CCcccccchhHHHH
Q 006760 536 INIAMSGEDPSYI--PLLPSGFTISPDGHLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILVSS-LPSAKLNMESVTTV 612 (632)
Q Consensus 536 m~~vm~G~dss~v--~LLPSGF~IlPDg~~~~~~~~s~s~~~~~~~~~~~~GSlLTvaFQil~~s-~p~akl~~esV~tv 612 (632)
+- ..+.+| .++|+||.|-|... ..++|.+|.-+|+=... .| ..-+..+
T Consensus 160 ~P-----~~~~~VR~~~~~~g~~i~p~~~-------------------~~~~t~vt~~~~~Dp~G~iP-----~~lvn~~ 210 (231)
T 2r55_A 160 CP-----PKPGFVRGFNHPCGCFCEPLPG-------------------EPTKTNLVTFFHTDLSGYLP-----QNVVDSF 210 (231)
T ss_dssp SC-----CCTTCEEEEECSEEEEEEECC---------------------CCCEEEEEEECEECCSSCC-----HHHHHHH
T ss_pred CC-----CCCCCEEEEEEeeEEEEEEeCC-------------------CCCcEEEEEEEEeCCCCCcc-----HHHHHHH
Confidence 21 123333 47899999998411 12578888877765443 23 1112211
Q ss_pred -HHHhHHHHHHHHHhhC
Q 006760 613 -NNLIGTTVQQIKAALN 628 (632)
Q Consensus 613 -~~li~~tvq~Ik~AL~ 628 (632)
..-+-.++++++.++.
T Consensus 211 ~~~~~~~~~~~Lr~~~~ 227 (231)
T 2r55_A 211 FPRSMTRFYANLQKAVK 227 (231)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHHHHHHHH
Confidence 1233377777777653
No 11
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=96.70 E-value=0.042 Score=51.65 Aligned_cols=169 Identities=11% Similarity=0.090 Sum_probs=94.8
Q ss_pred CCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhccCCCCcchhhhccCCCcceEEeeccCCCC
Q 006760 414 HRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHIANGSN 493 (632)
Q Consensus 414 ~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRde~~R~eWD~Ls~G~~vqe~~~Ia~g~~ 493 (632)
++|..... .++|+|..|+..+.| +..-+...-++.||+.+|++|.|...|.+||-.. .+.--|.+ +
T Consensus 3 ~~W~~~~~--~~gv~v~~~~~~~~~-----~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~-----~~~~vle~--~ 68 (189)
T 3qsz_A 3 DGWSLAKD--AEGIKVYVRNVEGSP-----LREFRGEVRLKAAADDVVKVLRDANAFRQWMPDV-----AASELLKA--T 68 (189)
T ss_dssp CCCEEEEE--ETTEEEEEECCTTCS-----SCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTE-----EEEEEEEE--C
T ss_pred CCCEEEEc--CCCEEEEEEeCCCCC-----eEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhc-----CEEEEEee--c
Confidence 57987653 468999999864333 2245566777999999999999999999999654 33333333 2
Q ss_pred CCceEEEEe--cc-cCCCCcEEEEEeeccCCcceEEEEcccChhhhhhhhcCCCCCC--CcccCCccEEcCCCCCCCCCC
Q 006760 494 PGNCISVLR--AI-NTSQNNMLILQESCIDSSGSLVVYCPVDLPAINIAMSGEDPSY--IPLLPSGFTISPDGHLDQGDG 568 (632)
Q Consensus 494 ~gN~VSllr--~~-~~~~~~mliLQes~tD~sgS~vVYAPVD~~~m~~vm~G~dss~--v~LLPSGF~IlPDg~~~~~~~ 568 (632)
.+..|--.. .. .-+..+..++.....|.-|.+++..-.+-+.. ...+.+ +..+++||.|-| |.
T Consensus 69 ~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g~~~i~~~~~~~~~-----P~~~~~VR~~~~~~~~~i~p-~~------ 136 (189)
T 3qsz_A 69 DTEQYHYLDNSAPWPVSNRDGVYHFTYEKAGDGAITVRVEAVPDYL-----PLRKGKVRIPRAKGQWTLVP-DA------ 136 (189)
T ss_dssp SSEEEEEEEECCSSSCCCEEEEEEEEEEECTTSCEEEEEEECTTSS-----CCCTTSEECCCEEEEEEEEE-CS------
T ss_pred CCceEEEEEeecCCCcCCcceEEEEEEEECCCCeEEEEEEcCCCcc-----CCCCCeEEeeEeeEEEEEEE-CC------
Confidence 233332222 11 12233455554444444455544332221100 011222 456788888888 21
Q ss_pred CCCCCCcCCCCCCCCCCceeEEeeehhhcCCCcccccchhHH-HHH-HHhHHHHHHHHHhhC
Q 006760 569 ASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVT-TVN-NLIGTTVQQIKAALN 628 (632)
Q Consensus 569 ~s~s~~~~~~~~~~~~GSlLTvaFQil~~s~p~akl~~esV~-tv~-~li~~tvq~Ik~AL~ 628 (632)
++|.+|.-+|+=... .+ +..+. .+. ..+-.++++++.++.
T Consensus 137 ---------------~~t~vt~~~~~dp~G----~i-P~~lvn~~~~~~~~~~l~~L~k~~~ 178 (189)
T 3qsz_A 137 ---------------DGVDVTYQMHASPGG----SI-PSWLANQTVVETPFGTLKALRSHLR 178 (189)
T ss_dssp ---------------SSEEEEEEEEECSCS----SS-CHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred ---------------CeEEEEEEEEeCCCC----CC-CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 368888777765443 22 22222 221 333467777777764
No 12
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=96.17 E-value=0.16 Score=49.10 Aligned_cols=194 Identities=12% Similarity=0.158 Sum_probs=112.0
Q ss_pred hhhhHHHHHHHHHHHHhhhccCCCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhc-cCC
Q 006760 389 GKRSMMKLAQRMVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFF-KDE 467 (632)
Q Consensus 389 GR~sllkLAqRM~~~F~~~v~~s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFL-Rde 467 (632)
....-.++++.-+..+..-+. ...+|..... ..++|.|..|+. +|. |.+. +...-+++||+.||++| .|.
T Consensus 8 ~~~~y~~~~~~~~~~~l~~~~--~~~gW~~~~~-~~~gv~vy~~~~--~~~--g~~~--k~~~~v~~~~~~v~~~l~~d~ 78 (221)
T 3p0l_A 8 QELAYLQQGEEAMQKALGILS--NQEGWKKESQ-QDNGDKVMSKVV--PDV--GKVF--RLEVVVDQPMERLYEELVERM 78 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--SCTTCEEEEE-CTTSCEEEEEEC--SSS--CEEE--EEEEEESSCHHHHHHHHTTTG
T ss_pred hHHHHHHHHHHHHHHHHHHHh--CCCCCeEeee-cCCCcEEEEEEc--CCC--ceEE--EEEEEEcCCHHHHHHHHHhcc
Confidence 344556677766666665554 3568987731 246788988885 332 4444 44445599999999998 577
Q ss_pred CCcchhhhccCCCcceEEeeccCCCCCCceEEEEe---cc---c-CCCCcEEEEEeeccCCcceEEEE-cccChhhhhhh
Q 006760 468 RTRPQWDVLTNGNAVQEVAHIANGSNPGNCISVLR---AI---N-TSQNNMLILQESCIDSSGSLVVY-CPVDLPAINIA 539 (632)
Q Consensus 468 ~~R~eWD~Ls~G~~vqe~~~Ia~g~~~gN~VSllr---~~---~-~~~~~mliLQes~tD~sgS~vVY-APVD~~~m~~v 539 (632)
..|.+||...- ..+.+-++. .+.. |.+ .. . -+..+..++.-...+. +.+++. -.|+-+.+-
T Consensus 79 ~~r~~Wd~~~~--~~~vle~~~----~~t~--I~y~~~~~~~~~~v~~RDfv~~r~~~~~~-~~~vi~~~Sv~~~~~P-- 147 (221)
T 3p0l_A 79 EAMGEWNPNVK--EIKVLQKIG----KDTF--ITHELAAEAAGNLVGPRDFVSVRCAKRRG-STCVLAGMATDFGNMP-- 147 (221)
T ss_dssp GGTTTSCTTCS--EEEEEEECS----SSEE--EEEEEECC---CCSCCEEEEEEEEEEECS-SCEEECCEECCCTTSC--
T ss_pred chhhhcCcchh--eEEEEEecC----CCeE--EEEEeeccccCCccCCceEEEEEEEEEcC-CeEEEEEEeccCCCCC--
Confidence 89999996542 234444442 2222 333 11 1 2345666666644443 555544 345544221
Q ss_pred hcCCCCCCC--cccCCccEEcCCCCCCCCCCCCCCCCcCCCCCCCCCCceeEEeeehhhcCCCcccccchhHHHHH-HHh
Q 006760 540 MSGEDPSYI--PLLPSGFTISPDGHLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVTTVN-NLI 616 (632)
Q Consensus 540 m~G~dss~v--~LLPSGF~IlPDg~~~~~~~~s~s~~~~~~~~~~~~GSlLTvaFQil~~s~p~akl~~esV~tv~-~li 616 (632)
..+.+| .++++||.|-|.+.+ ..+|.+|.-+|+=... .+..--|..+. .-+
T Consensus 148 ---~~~g~VR~~~~~~g~~i~p~~~~-------------------~~~t~vt~~~~~Dp~G----~iP~~lvn~~~~~~~ 201 (221)
T 3p0l_A 148 ---EQKGVIRAEHGPTCMVLHPLAGS-------------------PSKTKLTWLLSIDLKG----WLPKSIINQVLSQTQ 201 (221)
T ss_dssp ---CCTTSEECEECSCEEEEEEETTE-------------------EEEEEEEEEECEECCS----SCCHHHHHHHHHHHH
T ss_pred ---CCCCeEEEeccceEEEEEECCCC-------------------CCcEEEEEEEEecCCC----CCCHHHHHHHHHHHH
Confidence 123343 478999999984210 1378888888775443 23222333332 333
Q ss_pred HHHHHHHHHhhC
Q 006760 617 GTTVQQIKAALN 628 (632)
Q Consensus 617 ~~tvq~Ik~AL~ 628 (632)
-.+++.++.++.
T Consensus 202 ~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 202 VDFANHLRKRLE 213 (221)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 378888888886
No 13
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=96.14 E-value=0.025 Score=55.15 Aligned_cols=189 Identities=15% Similarity=0.172 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhccCCCCcch
Q 006760 393 MMKLAQRMVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFKDERTRPQ 472 (632)
Q Consensus 393 llkLAqRM~~~F~~~v~~s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLRde~~R~e 472 (632)
+.+.++..+..|.... ..+|..... .++|+|..++..+. .|-+. +...-+++||+.||++|.|...|.+
T Consensus 26 ~~~~~~e~l~~~~~~~----~~~W~~~~~--~~gv~vy~~~~~~~---~~~~~--k~~~~v~~~~~~v~~~l~d~~~r~~ 94 (224)
T 1jss_A 26 ISTKLQNTLIQYHSIE----EDEWRVAKK--AKDVTVWRKPSEEF---NGYLY--KAQGVMDDVVNNVIDHIRPGPWRLD 94 (224)
T ss_dssp HHHHHHHHHHHHTTSC----GGGCEEEEE--ETTEEEEEEECSSS---SSEEE--EEEEEESSCHHHHHHHHSSSTTHHH
T ss_pred HHHHHHHHHHHHhhhC----CCCCEEEEE--CCCEEEEEEeccCC---CceEE--EEEEEEeCCHHHHHHHHhCcccccc
Confidence 4444444444443322 567986643 37899999865321 23343 4444559999999999999999999
Q ss_pred hhhccCCCcceEEeeccCCCCCCceEEEEe--ccc---CCCCcEEEEEeeccCCcceEEEEcccChhhhhhhhcCCCCCC
Q 006760 473 WDVLTNGNAVQEVAHIANGSNPGNCISVLR--AIN---TSQNNMLILQESCIDSSGSLVVYCPVDLPAINIAMSGEDPSY 547 (632)
Q Consensus 473 WD~Ls~G~~vqe~~~Ia~g~~~gN~VSllr--~~~---~~~~~mliLQes~tD~sgS~vVYAPVD~~~m~~vm~G~dss~ 547 (632)
||..... .+.+-+| +..+.|--.. ..- -+..+..++.....+.-+.+++.-.||-+.+ .+.+
T Consensus 95 Wd~~~~~--~~vle~i----d~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~vi~~~Sv~hp~~-------~~g~ 161 (224)
T 1jss_A 95 WDRLMTS--LDVLEHF----EENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSET-------RPEF 161 (224)
T ss_dssp HCSSEEE--EEEEEEC----STTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEEEECCCCCC-------CTTS
T ss_pred cccceee--EEEEEEc----CCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeEEEEEeeeecCCC-------CCCC
Confidence 9965422 2334444 2223332222 111 2345666666544444556666677776643 1334
Q ss_pred C--cccCCccEEcCCCCCCCCCCCCCCCCcCCCCCCCCCCceeEEeeehhhcCCCcccccchhHHHH-HHHhHHHHHHHH
Q 006760 548 I--PLLPSGFTISPDGHLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVTTV-NNLIGTTVQQIK 624 (632)
Q Consensus 548 v--~LLPSGF~IlPDg~~~~~~~~s~s~~~~~~~~~~~~GSlLTvaFQil~~s~p~akl~~esV~tv-~~li~~tvq~Ik 624 (632)
| ..+++||.|-|.+. ...+|.+|.-+|+=... .+...-+..+ ...+-.+++.++
T Consensus 162 VR~~~~~~g~~i~p~~~-------------------~~~~t~vt~~~~~Dp~G----~iP~~lvn~~~~~~~~~~~~~Lr 218 (224)
T 1jss_A 162 VRGYNHPCGWFCVPLKD-------------------SPSQSLLTGYIQTDLRG----MIPQSAVDTAMASTLANFYSDLR 218 (224)
T ss_dssp EECEECSEEEEEEEETT-------------------EEEEEEEEEEECEECCS----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecccEEEEEEcCC-------------------CCCceEEEEEEEeCCCC----CccHHHHHHHHHHhHHHHHHHHH
Confidence 3 47899999988311 01368888666654443 2222222222 133347777777
Q ss_pred HhhC
Q 006760 625 AALN 628 (632)
Q Consensus 625 ~AL~ 628 (632)
.++.
T Consensus 219 ~~~~ 222 (224)
T 1jss_A 219 KGLR 222 (224)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 7654
No 14
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=95.88 E-value=0.14 Score=44.02 Aligned_cols=141 Identities=11% Similarity=-0.008 Sum_probs=81.5
Q ss_pred ceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeec
Q 006760 203 DSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIE 282 (632)
Q Consensus 203 ~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~ 282 (632)
.+..|...+.++-+.|.|.+.|.+.+|.+. .++++..+. +|.. ..-.+.. + +.+.-+..|+....+
T Consensus 6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~----~~~~~~~~~----~g~~--~~~~~~~--~--g~~~~~~~~~~~~~~ 71 (147)
T 2d4r_A 6 AERYIPAPPERVYRLAKDLEGLKPYLKEVE----SLEVVAREG----ARTR--SRWVAVA--M--GKKVRWLEEEEWDDE 71 (147)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHGGGCTTEE----EEEEEEEET----TEEE--EEEEEEE--T--TEEEEEEEEEEEETT
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhccccc----EEEEEEeCC----CccE--EEEEEEe--C--CceEEEEEEEEEcCC
Confidence 345566788899999999999999999753 355665432 2321 1111222 2 223334455543322
Q ss_pred CCeEEEEEEecCCCCCCCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHHH
Q 006760 283 QGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQR 362 (632)
Q Consensus 283 ~G~WaVvDvSld~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLqR 362 (632)
+...+. . ..++. ..... .-.-+++.++| |+|+|..+.+..... ...++.+++..-+.-+.++.+..|.+
T Consensus 72 ~~~i~~-~-~~~g~-~~~~~------~~~~~~~~~~g-T~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~lk~ 140 (147)
T 2d4r_A 72 NLRNRF-F-SPEGD-FDRYE------GTWVFLPEGEG-TRVVLTLTYELTIPI-FGGLLRKLVQKLMQENVESLLKGLEE 140 (147)
T ss_dssp TTEEEE-E-EEEES-CSEEE------EEEEEEECSSS-EEEEEEEEEECCCTT-TTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEE-E-eccCC-hhheE------EEEEEEECCCC-cEEEEEEEEecCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 1 11211 00000 11335677888 999999988876444 45566666655555678899999999
Q ss_pred HHHHHH
Q 006760 363 MCERFA 368 (632)
Q Consensus 363 ~cerla 368 (632)
++|+.+
T Consensus 141 ~~e~~~ 146 (147)
T 2d4r_A 141 RVLAAS 146 (147)
T ss_dssp HHHHTT
T ss_pred HHHhhc
Confidence 998754
No 15
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=95.49 E-value=0.13 Score=48.94 Aligned_cols=169 Identities=14% Similarity=0.184 Sum_probs=95.8
Q ss_pred CCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeec-CCchhhhhhccCCCCcchhhhccCCCcceEEeeccC
Q 006760 412 NRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLP-IPPQNVFNFFKDERTRPQWDVLTNGNAVQEVAHIAN 490 (632)
Q Consensus 412 ~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLP-vpp~~vFdFLRde~~R~eWD~Ls~G~~vqe~~~Ia~ 490 (632)
...+|..... .++|+|..|+.... .+..-++..-++ +||+.||++|.|...|.+||..... .--|-+
T Consensus 26 ~~~~W~~~~~--~~~v~v~~~~~~~~-----~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~-----~~vle~ 93 (214)
T 1ln1_A 26 AGADWQLLVE--TSGISIYRLLDKKT-----GLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKE-----LYEQEC 93 (214)
T ss_dssp TTTTCEEEEE--ETTEEEEEEEETTT-----TEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEE-----EEEEEE
T ss_pred CCCCcEEEEE--CCCeEEEEeccCCC-----CcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhh-----EEEecc
Confidence 4568987764 45799998875322 234557777787 9999999999999999999965322 111211
Q ss_pred CCCCCceEEEEe----c-ccCCCCcEEEEEeec-cCCcc--e-EEEEcccChhhhhhhhcCCCCCC--CcccCCccEEcC
Q 006760 491 GSNPGNCISVLR----A-INTSQNNMLILQESC-IDSSG--S-LVVYCPVDLPAINIAMSGEDPSY--IPLLPSGFTISP 559 (632)
Q Consensus 491 g~~~gN~VSllr----~-~~~~~~~mliLQes~-tD~sg--S-~vVYAPVD~~~m~~vm~G~dss~--v~LLPSGF~IlP 559 (632)
.|+. +++ . ..-+..+..++.... .|.-| . .++.-.|+-+.+ ...+.+ +..+++||.|-|
T Consensus 94 ---~~~~--i~~~~~~~p~p~~~RD~v~~~~~~~~~~~g~~~~~i~~~Sv~~p~~-----P~~~~~VR~~~~~~~~~i~p 163 (214)
T 1ln1_A 94 ---NGET--VVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQL-----GERSGVIRVKQYKQSLAIES 163 (214)
T ss_dssp ---TTEE--EEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTB-----CCCTTSEEECCEEEEEEEEE
T ss_pred ---CCCE--EEEEEEEcCCCCCCceEEEEEEEEecccCCCeEEEEEEecccCCCC-----CCCCCcEEEEEEEEEEEEec
Confidence 1222 333 1 112223455554322 23333 2 344556665521 112444 457899999988
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCCCCceeEEeeehhhcCCCcccccchhHHHH--HHHhHHHHHHHHHhhC
Q 006760 560 DGHLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVTTV--NNLIGTTVQQIKAALN 628 (632)
Q Consensus 560 Dg~~~~~~~~s~s~~~~~~~~~~~~GSlLTvaFQil~~s~p~akl~~esV~tv--~~li~~tvq~Ik~AL~ 628 (632)
.+ .++|.+|.-.|+=... -.+..+... ...+-.++++++.++.
T Consensus 164 ~~---------------------~~~t~v~~~~~~Dp~G-----~iP~~l~n~~~~~~~~~~l~~l~k~~~ 208 (214)
T 1ln1_A 164 DG---------------------KKGSKVFMYYFDNPGG-----QIPSWLINWAAKNGVPNFLKDMARACQ 208 (214)
T ss_dssp CS---------------------SSSEEEEEEEEECCSS-----CCCHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CC---------------------CCceEEEEEEEECCCC-----cccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 42 1468888877765543 112222211 1334466777776653
No 16
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=95.28 E-value=0.24 Score=49.01 Aligned_cols=173 Identities=17% Similarity=0.222 Sum_probs=98.7
Q ss_pred CCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhh-hhccCCCCcchhhhccCCCcceEEeeccC
Q 006760 412 NRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVF-NFFKDERTRPQWDVLTNGNAVQEVAHIAN 490 (632)
Q Consensus 412 ~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vF-dFLRde~~R~eWD~Ls~G~~vqe~~~Ia~ 490 (632)
...+|..... .++|+|.+++.. +|.| +-.-++..-+|.+|..+| ++|.| |.+||...-. ++.+-.|.
T Consensus 48 ~~~gW~~~~~--~~gi~V~~k~~~-~~~~---~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~~--~~vle~id- 115 (237)
T 2pso_A 48 KFKGWVTCSS--TDNTDLAFKKVG-DGNP---LKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFVQ--WKVVETLD- 115 (237)
T ss_dssp HCCSCEEECC--SSSCEEEEECCC-SSCC---CCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBCC--CEEEEEEE-
T ss_pred CCCCCEEEec--CCCeEEEEEEcC-CCCC---cEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhce--EEEEEEcC-
Confidence 4557987653 578999999852 2222 223456666787777765 67777 9999975432 34444442
Q ss_pred CCCCCceEEEEe--ccc-CCCCcEEEEEeeccC-CcceEEE-EcccChhhhhhhhcCCCCCCCcccCCccEEcCCCCCCC
Q 006760 491 GSNPGNCISVLR--AIN-TSQNNMLILQESCID-SSGSLVV-YCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGHLDQ 565 (632)
Q Consensus 491 g~~~gN~VSllr--~~~-~~~~~mliLQes~tD-~sgS~vV-YAPVD~~~m~~vm~G~dss~v~LLPSGF~IlPDg~~~~ 565 (632)
..+.|--.. ... ....+..++.-...| .-|++|| ...|+-+.+-. . |. =-+..+|+||.|-|.+
T Consensus 116 ---~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~-~-g~--VR~~~~~~g~~i~P~~---- 184 (237)
T 2pso_A 116 ---RQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQL-L-GG--VRAVVMDSQYLIEPCG---- 184 (237)
T ss_dssp ---TTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCC-C-SS--EECCEEEEEEEEEECS----
T ss_pred ---CCcEEEEEEecCCCCcCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCC-C-Cc--EEEEEeccEEEEEECC----
Confidence 223332222 111 234566666655555 3366665 34566553321 1 21 1346789999999952
Q ss_pred CCCCCCCCCcCCCCCCCCCCceeEEeeehhhcC-CCcccccchhHHHHHHHhHHHHHHHHHhhCC
Q 006760 566 GDGASTSSNVHGNMGSRSSGSLISVAFQILVSS-LPSAKLNMESVTTVNNLIGTTVQQIKAALNC 629 (632)
Q Consensus 566 ~~~~s~s~~~~~~~~~~~~GSlLTvaFQil~~s-~p~akl~~esV~tv~~li~~tvq~Ik~AL~~ 629 (632)
.++|.+|.-+|+=... .|.. ++ ..+...+..++.++|.++..
T Consensus 185 -----------------~~~t~vt~~~~~Dp~G~iP~~-ln----~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 185 -----------------SGKSRLTHICRIDLKGHSPEW-YS----KGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp -----------------TTCEEEEEEEEECCSSSCTTT-TT----THHHHHHHHHHHHHHHTTSC
T ss_pred -----------------CCCEEEEEEEEeCCCCCchHH-HH----HHHHHHHHHHHHHHHHHHHh
Confidence 1478888887775553 3322 11 11234445789999988764
No 17
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=94.78 E-value=0.49 Score=45.91 Aligned_cols=193 Identities=11% Similarity=0.069 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHHHHhhhccCCCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhh-hhccCCCC
Q 006760 391 RSMMKLAQRMVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVF-NFFKDERT 469 (632)
Q Consensus 391 ~sllkLAqRM~~~F~~~v~~s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vF-dFLRde~~ 469 (632)
+.-++.++.....|-.-+. ...+|...... .++++|..+...+. |.+. ....-+++||+.|| +++.|...
T Consensus 21 ~~y~~~~~~a~~~~~~~l~--~~~~W~~~~~~-~~g~~vy~~~~~~~----g~~~--k~~~~v~~~~~~v~~~~~~d~~~ 91 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILA--QEENWKFEKNN-EYGDTVYTIEVPFH----GKTF--ILKTFLPCPAELVYQEVILQPER 91 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TGGGCEEEEEC-TTCCEEEEEEETTT----EEEE--EEEEEESSCHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCEEEEec-CCCCEEEEEecCCC----CceE--EEEEEecCCHHHHHHHHHhCccc
Confidence 4555555555555544443 24589876432 35788888775432 3344 34444599999999 99999999
Q ss_pred cchhhhccCCCcceEEeeccCCCCCCceEEEEe---cc---c-CCCCcEEEEEeeccCCcceEEEEcccChhhhhhhhcC
Q 006760 470 RPQWDVLTNGNAVQEVAHIANGSNPGNCISVLR---AI---N-TSQNNMLILQESCIDSSGSLVVYCPVDLPAINIAMSG 542 (632)
Q Consensus 470 R~eWD~Ls~G~~vqe~~~Ia~g~~~gN~VSllr---~~---~-~~~~~mliLQes~tD~sgS~vVYAPVD~~~m~~vm~G 542 (632)
|.+||...- ..+.+-+|. .++.| .+ .. . .+..+..++.-...+.-+-+++...|+-+.+-
T Consensus 92 r~~Wd~~~~--~~~vle~~~----~~t~I--~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~vi~~~Sv~~~~~P----- 158 (229)
T 1em2_A 92 MVLWNKTVT--ACQILQRVE----DNTLI--SYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATSHSAKP----- 158 (229)
T ss_dssp HTTTCTTEE--EEEEEEEET----TTEEE--EEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEEEECCCTTSC-----
T ss_pred hhhcccccc--eEEEEEecC----CCeEE--EEEEecCcCCCCcCCCeeEEEEEEEEcCCEEEEEEecccCCCCC-----
Confidence 999996542 233344442 22333 33 11 1 23356666665544444445666677766321
Q ss_pred CCCCC--CcccCCccEEcCCCCCCCCCCCCCCCCcCCCCCCCCCCceeEEeeehhhcCCCcccccchhHHHHH-HHhHHH
Q 006760 543 EDPSY--IPLLPSGFTISPDGHLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILVSSLPSAKLNMESVTTVN-NLIGTT 619 (632)
Q Consensus 543 ~dss~--v~LLPSGF~IlPDg~~~~~~~~s~s~~~~~~~~~~~~GSlLTvaFQil~~s~p~akl~~esV~tv~-~li~~t 619 (632)
..+.+ +.++++||.|-|... ..++|.+|.-+|+=... .+..--+..+. ..+-.+
T Consensus 159 ~~~~~VR~~~~~~g~~i~p~~~-------------------~~~~t~vt~~~~~Dp~G----~iP~~l~n~~~~~~~~~~ 215 (229)
T 1em2_A 159 PTHKYVRGENGPGGMIVLKSAS-------------------NPRVCTFVWILNTDLKG----RLPRYLIHQSLAATMFEF 215 (229)
T ss_dssp CCTTSEECEECSEEEEEEECSS-------------------CTTCEEEEEEECEECCS----SSCHHHHHHHHHHHHHHH
T ss_pred CCCCCEeeeecccEEEEEecCC-------------------CCCcEEEEEEEEECCCC----CCCHHHHHHHHHHHHHHH
Confidence 11222 446899999998311 12478888877765443 12211122222 344477
Q ss_pred HHHHHHhhC
Q 006760 620 VQQIKAALN 628 (632)
Q Consensus 620 vq~Ik~AL~ 628 (632)
++.++.++.
T Consensus 216 ~~~Lr~~~~ 224 (229)
T 1em2_A 216 AFHLRQRIS 224 (229)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777653
No 18
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=93.56 E-value=0.26 Score=49.92 Aligned_cols=152 Identities=22% Similarity=0.301 Sum_probs=90.3
Q ss_pred CcchhhhHHHHHHHHHHHHhhhccCCCCCCCccccCCCcccEEEEEecCCCCCCCCceEEEEeeeeeecCCchhhhhhcc
Q 006760 386 SPDGKRSMMKLAQRMVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVLNAATTFWLPIPPQNVFNFFK 465 (632)
Q Consensus 386 ~~~GR~sllkLAqRM~~~F~~~v~~s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VLsA~tS~wLPvpp~~vFdFLR 465 (632)
.++-+.+=+.|+.-.+.+...-. ...+|..... .++|+|.++.. + | .++-+...-+++||+.||++|.
T Consensus 41 ~~w~~~~~~~l~~~n~~al~~l~---~~~gW~~~~~--~~gv~Vy~~~~--~----~-~l~~k~~~~v~~~~~~v~~~L~ 108 (258)
T 3fo5_A 41 VPWDPSNQVYLSYNNVSSLKMLV---AKDNWVLSSE--ISQVRLYTLED--D----K-FLSFHMEMVVHVDAAQAFLLLS 108 (258)
T ss_dssp EECCGGGHHHHHHHHHHHHHHHH---TCSCCEEEEE--ETTEEEEEEEC--S----S-CEEEEEEEEESSCHHHHHHHHH
T ss_pred cccCcccceecccCCHHHHHhhh---ccCCCEEEec--CCCeEEEEEEC--C----C-ceEEEEEEEEeCCHHHHHHHHh
Confidence 34777777888877666554322 4678987653 46899998652 2 2 3455677778999999999999
Q ss_pred CCCCcchhhhccCCCcceEEeeccCCCCCCceEEEEe-cc--cCCC-CcEEEEEeeccC-Ccce-EEEE-cccChhhhhh
Q 006760 466 DERTRPQWDVLTNGNAVQEVAHIANGSNPGNCISVLR-AI--NTSQ-NNMLILQESCID-SSGS-LVVY-CPVDLPAINI 538 (632)
Q Consensus 466 de~~R~eWD~Ls~G~~vqe~~~Ia~g~~~gN~VSllr-~~--~~~~-~~mliLQes~tD-~sgS-~vVY-APVD~~~m~~ 538 (632)
|...|.+||...- ..+.+.+|. ..+.|--+. +. ..-. .+..+|.-..++ ..|. +||- -.|+-+.+-
T Consensus 109 D~~~R~~WD~~~~--~~~vle~id----~~~ivY~~~~p~~~~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp~~P- 181 (258)
T 3fo5_A 109 DLRQRPEWDKHYR--SVELVQQVD----EDDAIYHVTSPALGGHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHR- 181 (258)
T ss_dssp CGGGGGGTCTTCC--EEEEEEEEE----TTEEEEEEEECCCTTCSSCEEEEEEEEEECCSSTTCCEEEEEEEEECTTSC-
T ss_pred CchhHhHhhhhcc--EEEEEEEcC----CCeEEEEEecCCccCCCCCCEEEEEEEEEeccCCCCEEEEEEEeccCCCCC-
Confidence 9999999996542 234444442 123333111 11 1122 345555444333 2443 4443 344433211
Q ss_pred hhcCCCCCCC--cccCCccEEcCC
Q 006760 539 AMSGEDPSYI--PLLPSGFTISPD 560 (632)
Q Consensus 539 vm~G~dss~v--~LLPSGF~IlPD 560 (632)
.-+.+| ..+|+||.|-|.
T Consensus 182 ----p~~g~VR~~~~~sg~~I~P~ 201 (258)
T 3fo5_A 182 ----ETPEYRRGETLCSGFCLWRE 201 (258)
T ss_dssp ----CCTTSEECCCSSEEEEEEEE
T ss_pred ----CCCCCEEEEEcCcEEEEEEC
Confidence 123334 689999999995
No 19
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=93.09 E-value=0.026 Score=57.14 Aligned_cols=37 Identities=27% Similarity=0.314 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHH
Q 006760 13 LRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELD 67 (632)
Q Consensus 13 Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~ 67 (632)
|++||++||.||..|++.+ .+.++|+.||+|||+.|+
T Consensus 24 l~~eN~~Lk~e~~~l~~~~------------------~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLE------------------SEVADLKKENKDLKESLD 60 (255)
T ss_dssp --CTTTTHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhc
Confidence 4555555666665555544 234568899999998876
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.56 E-value=0.35 Score=41.29 Aligned_cols=52 Identities=21% Similarity=0.391 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHH----HHhhhhhhc
Q 006760 11 CGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELD----RVSSIAAKY 76 (632)
Q Consensus 11 ~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~----r~~~~~~k~ 76 (632)
.+|+-|.+.||.+|..+.+....+ .-.-..|+.||++||+|.. |+.++++|.
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~--------------~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNA--------------QHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666655543110 0112349999999999986 777777664
No 21
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=90.61 E-value=1.4 Score=39.38 Aligned_cols=141 Identities=14% Similarity=0.164 Sum_probs=83.3
Q ss_pred cceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeee
Q 006760 202 RDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQI 281 (632)
Q Consensus 202 R~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql 281 (632)
+.+..|...+.++-+.+.|.++|.+.+|.+.. ++|++.+..|. |. -+.+++.+-- -+.++-|..|+..+-
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~----~~v~~~~~~~g--~~--~~~~~~~~~~--~~~~~~~~~~v~~~~ 74 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWITG----MRTWNGRVDGA--VS--TVDAEAQVGF--SFLREKFATRVRRDK 74 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSCCC----CCEEEEEEETT--EE--EEEEEEECST--TSSCCEEEEEEEEET
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCcCe----eEEEEecCCCC--Cc--eEEEEEEEEe--cceeEEEEEEEEEcC
Confidence 34566777889999999999999999987754 45665433221 11 2556666532 355666777887643
Q ss_pred cCCeEEEEEEecCCCCCCCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHH
Q 006760 282 EQGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQ 361 (632)
Q Consensus 282 ~~G~WaVvDvSld~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLq 361 (632)
.+ ..|.-.++++. .......++ +++.++| |+|++.-+.|....- ...+..+++ .--+++.+.++.
T Consensus 75 ~~--~~i~~~~~~G~-f~~~~g~w~------f~~~~~g-t~v~~~~~~~~~~~l-~~~l~~~~~----~~~~~~~~~~f~ 139 (148)
T 1t17_A 75 DA--RSIDVSLLYGP-FKRLNNGWR------FMPEGDA-TRVEFVIEFAFKSAL-LDAMLAANV----DRAAGKLIACFE 139 (148)
T ss_dssp TT--CEEEEEESSTT-SSCEEEEEE------EEEETTE-EEEEEEEEECCSCHH-HHHHHHHHH----HHHHHHHHHHHH
T ss_pred CC--cEEEEEECCCC-hhccEEEEE------EEECCCC-eEEEEEEEEEECcHH-HHHHHHHHH----HHHHHHHHHHHH
Confidence 33 22333344531 111112222 4567778 999998888774222 223444443 223677777777
Q ss_pred HHHHHH
Q 006760 362 RMCERF 367 (632)
Q Consensus 362 R~cerl 367 (632)
+.|+.+
T Consensus 140 ~r~~~~ 145 (148)
T 1t17_A 140 ARAQQL 145 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777754
No 22
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=89.60 E-value=6.5 Score=36.20 Aligned_cols=143 Identities=11% Similarity=0.083 Sum_probs=79.5
Q ss_pred cceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeee
Q 006760 202 RDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQI 281 (632)
Q Consensus 202 R~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql 281 (632)
..+-+|.-.+.++-+.+-|.++|-+.+|.+ +.++++..+. + . +.+++.+.-. ..++-|.-|+..+-
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~~----~~~~v~~~~~----~-~---~~~~~~~~~~--G~~~~~~s~~~~~~ 73 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPPT----EKVEILEEGQ----G-Y---QVVRLHVDVA--GEINTWTSRRDLDP 73 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSSE----EEEEEEEEET----T-E---EEEEEEEEET--TEEEEEEEEEEEET
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCccc----ceEEEEecCC----C-E---EEEEEEEecC--CEEEEEEEEEEEeC
Confidence 455677778999999999999999999974 4466665432 1 1 3344443222 23444444444333
Q ss_pred cCCe--EEEEEEecCCCCCCCccceeccCCcce-EEeCCCCceEEEEEEeeeecCCCccchhhhhhhc---------ccc
Q 006760 282 EQGS--WAVVNVSYDSPQFSSQCQSHRFPSGCL-IQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQ---------SGM 349 (632)
Q Consensus 282 ~~G~--WaVvDvSld~~~~~~~~r~rrlPSGcl-Iq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~---------Sg~ 349 (632)
++.. |-.++ .++ ++. .+ .|.. +++.++|.|+|+|.-+.++.... +..++.++.. .-+
T Consensus 74 ~~~~i~~~~~~--~~g----pf~---~~-~g~w~f~~~~~~~t~V~~~~~~~~~~~~-l~~~lg~~~~~~~~~~~~~~~l 142 (172)
T 3tfz_A 74 ARRVIAYRQLE--TAP----IVG---HM-SGEWRAFTLDAERTQLVLTHDFVTRAAG-DDGLVAGKLTPDEAREMLEAVV 142 (172)
T ss_dssp TTTEEEEEEEE--CCT----TEE---EE-EEEEEEEEEETTEEEEEEEEEEEECCCC-TTSSBTTTBCHHHHHHHHHHHH
T ss_pred CCCEEEEEEee--CCC----Chh---hc-EEEEEEEECCCCcEEEEEEEEEEEcChh-HHHhhccccCchhhHHHHHHHH
Confidence 2222 22221 111 110 00 1222 56666788999999999988766 6666665431 112
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 006760 350 AFGADRWLATLQRMCERFAC 369 (632)
Q Consensus 350 afGA~RWlatLqR~cerla~ 369 (632)
.=+.+.-|+.|.+++|+.+.
T Consensus 143 ~~~~~~~L~~lk~~aE~~~~ 162 (172)
T 3tfz_A 143 ERNSVADLNAVLGEAERRVR 162 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHh
Confidence 22233456666666666554
No 23
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=88.93 E-value=2.6 Score=38.63 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=81.6
Q ss_pred ceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeec
Q 006760 203 DSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIE 282 (632)
Q Consensus 203 ~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~ 282 (632)
.+.+|.-.+.++-+.+.|.++|...||..+.- +-.. +|..+.+.+++.+-. ...|+-|..||...-+
T Consensus 11 ~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~----~~~~-------~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~~ 77 (161)
T 3p9v_A 11 RDLEIPASYDEVFDLLADVPKSASHFPKVDKL----VDLG-------NNAYRWEMEKVGVDK--HAIQSVYACTYHADKE 77 (161)
T ss_dssp EEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE----EEEE-------TTEEEEEECCBSSGG--GCBCCEEEEEEEEETT
T ss_pred EEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE----EEcC-------CCceEEEEEEEeeee--EEEEEEEEEEEEEcCC
Confidence 45677788999999999999999999987764 1111 233344445555433 3348888999876543
Q ss_pred CCeEEEEEEec-CCCCCCCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHH
Q 006760 283 QGSWAVVNVSY-DSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQ 361 (632)
Q Consensus 283 ~G~WaVvDvSl-d~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLq 361 (632)
+. .+ +..+ ++......... .-+++.++|.|+|+|.-+.|.. .++..++..+...-+--.+++.+.+..
T Consensus 78 ~~-~I--~~~~~~g~~~~~l~g~------w~f~p~~~g~t~V~~~~~~e~~--~pl~~ll~~~~~~~~~~~~~~~v~af~ 146 (161)
T 3p9v_A 78 AG-KI--TWSPIKGEGNGVVSGS------WTLSAKGDNATAVKFQTSAELT--VPLPSLLKLAISPVIKHEFNSLVDTYM 146 (161)
T ss_dssp TT-EE--EEEECTTSTTEEEEEE------EEEEESSSSCEEEEEEEEEEEE--ECSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-EE--EEEEecCccceeEEEE------EEEEECCCCeEEEEEEEEEEEc--CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 22 2222 32110111122 3357778888999999888876 113344443332222223566666655
Q ss_pred HHHHH
Q 006760 362 RMCER 366 (632)
Q Consensus 362 R~cer 366 (632)
+-++.
T Consensus 147 ~ra~~ 151 (161)
T 3p9v_A 147 ANLKK 151 (161)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 55443
No 24
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=88.06 E-value=7.2 Score=36.12 Aligned_cols=141 Identities=13% Similarity=0.129 Sum_probs=79.4
Q ss_pred cceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeee--cccccccceeeEEEEeee
Q 006760 202 RDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQ--VLSPVVPTREFYVLRYCQ 279 (632)
Q Consensus 202 R~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~--v~SPLVP~Re~~fLRyck 279 (632)
..+.+|.-.+.++-+.+-|.++|-++||.++ ..+|++.+ | . -+.+++. +-.- - .++-+..|+..
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~~~----~~~vl~~~--~----~--~~~~rl~~~~~~~-G-~~~~~ts~~~~ 71 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSEYA----SVEVLGRD--D----D--KVTFRLTMHPDAD-G-KVWSWVSERVA 71 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSSEE----EEEEEEEC--S----S--EEEEEEEECCCTT-S-CCCEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhCce----EEEEEecC--C----C--EEEEEEEEEeccC-c-eEEEEEEEEEE
Confidence 4566777889999999999999999998654 46677653 1 1 2444443 3221 1 34445566643
Q ss_pred eecCCeEEEEEEecCCCCCCCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccch-hhhhhhcccchhhHHHHHH
Q 006760 280 QIEQGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHR-LYQDLIQSGMAFGADRWLA 358 (632)
Q Consensus 280 ql~~G~WaVvDvSld~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~-lyrpl~~Sg~afGA~RWla 358 (632)
. .++..+ +..+. ..+++ +.+=...-..+.++| |+|+|.-+.+.++..|++- .-...++. ..+.-|+
T Consensus 72 d-~~~~~I--~~~~~--~~gPf---~~l~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~~~~~~~~~~----~~~~~L~ 138 (159)
T 3tl1_A 72 D-PVTRTV--RAQRV--ETGPF---QYMNIVWEYAETAEG-TVMRWTQDFAMKPDAPVDDAWMTDNINR----NSRTQMA 138 (159)
T ss_dssp E-TTTTEE--EEEES--SCTTE---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCHHHHHHHHHH----HHHHHHH
T ss_pred c-CCCCEE--EEEEc--cCCCh---hhccCEEEEEECCCC-EEEEEEEEEEecCCCCCCHHHHHHHHHh----hHHHHHH
Confidence 3 333232 33311 01122 223233446777774 9999999999986652221 01111111 1344577
Q ss_pred HHHHHHHHHHh
Q 006760 359 TLQRMCERFAC 369 (632)
Q Consensus 359 tLqR~cerla~ 369 (632)
.|.+.+|+.+.
T Consensus 139 ~lK~~~E~~~~ 149 (159)
T 3tl1_A 139 LIRDRIEQAAG 149 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhh
Confidence 77777776654
No 25
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=86.13 E-value=16 Score=34.21 Aligned_cols=143 Identities=12% Similarity=0.114 Sum_probs=79.1
Q ss_pred cceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeee
Q 006760 202 RDSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQI 281 (632)
Q Consensus 202 R~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql 281 (632)
..+.+|.-.+.++-+.+-|.++|-+.||.++. .++++.+. +. ..+...+++..--. .++|..-|.+ -
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~----~~~~~~~~-----~~-~~~~l~~~~~~~G~-~~~~ts~~~~--d 72 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSEYAE----AEILRQDG-----DG-FDFRLKTRPDANGR-VWEWVSHRVP--D 72 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTTEEE----EEEEEEET-----TE-EEEEEEECCCTTSC-CCEEEEEEEE--E
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhheeE----EEEEecCC-----CE-EEEEEEEEecCCCe-EEEEEEEEEE--c
Confidence 34566777888999999999999999997654 55665431 11 11222222332221 2233332322 1
Q ss_pred cCCeEEEEEEecCCCCCCCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccc-hhhhhhhcccchhhHHHHHHHH
Q 006760 282 EQGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIH-RLYQDLIQSGMAFGADRWLATL 360 (632)
Q Consensus 282 ~~G~WaVvDvSld~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh-~lyrpl~~Sg~afGA~RWlatL 360 (632)
.++..+....-.++ ++ +.+=...-+.+.++| |+|+|.-+.++++..+.. ...+..+.. ..+..++.|
T Consensus 73 ~~~~~I~~~~l~~g----Pf---~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~~~~~~av~~----~~~~~L~~L 140 (169)
T 3tvq_A 73 KGSRTVRAHRVETG----PF---AYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAPFDNAHMTAHLNT----TTRANMERI 140 (169)
T ss_dssp GGGTEEEEEESSCT----TE---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCHHHHHHHHHH----HHHHHHHHH
T ss_pred CCCcEEEEEEcCCC----Ch---hheeeEEEEEECCCC-EEEEEEEEEEecCCCcccHHHHHHHHHh----hHHHHHHHH
Confidence 22322222211121 22 222234456788888 999999999997654232 122223322 235678899
Q ss_pred HHHHHHHHh
Q 006760 361 QRMCERFAC 369 (632)
Q Consensus 361 qR~cerla~ 369 (632)
.+.+|+.+.
T Consensus 141 K~~aE~~~~ 149 (169)
T 3tvq_A 141 KKIIEDRHR 149 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhhhh
Confidence 999998775
No 26
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=77.76 E-value=1.1 Score=30.21 Aligned_cols=17 Identities=35% Similarity=0.686 Sum_probs=14.5
Q ss_pred HHHHHhhhccHHHHHHH
Q 006760 53 QKLRMENAQLKEELDRV 69 (632)
Q Consensus 53 q~Lr~ENArLk~El~r~ 69 (632)
.+|+..|||||+|+.-+
T Consensus 3 rrlkqknarlkqeiaal 19 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAAL 19 (28)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHH
Confidence 46899999999999755
No 27
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=75.72 E-value=5.8 Score=35.06 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=37.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhCCC---CCCCCCCCC-C---CCCchhHHHHHHhhhccHHHHHHHhhhhhhc
Q 006760 7 RADNCGLRAENDKIRCENIAIREALKNVI---CPSCGGPPV-T---EDSYFDEQKLRMENAQLKEELDRVSSIAAKY 76 (632)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n~~---C~~CGgp~~-~---~~~~~eeq~Lr~ENArLk~El~r~~~~~~k~ 76 (632)
|.+-..|+.||++||.++..|.-.|-+.. ..+|-.--+ + ...+...|+.+.+=.+|++|++|+...+.+.
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666555555555554431 233321111 1 1113355667777788888888888766654
No 28
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=75.25 E-value=2.2 Score=41.99 Aligned_cols=170 Identities=15% Similarity=0.159 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCccccCCCcccEEEEEecCCCCCCCCceEE-EEeeeeeec-CCchhhhhhccCCCCc
Q 006760 393 MMKLAQRMVSSFCTSISTSNRHRGTTISGLNEVGVRVTLHKSMDPGQPNGVVL-NAATTFWLP-IPPQNVFNFFKDERTR 470 (632)
Q Consensus 393 llkLAqRM~~~F~~~v~~s~~~~W~~l~~~~~~dVrv~~rk~~~~G~p~G~VL-sA~tS~wLP-vpp~~vFdFLRde~~R 470 (632)
+-++.+..+..+-..+ ....+|..... .++|+|..|+..+.| .++ .-++..-++ ++|+.||++|.|...|
T Consensus 28 ~~~~~~e~l~~~~~~~--~~~~~W~~~~~--~~gv~vy~~~~~~~g----~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r 99 (255)
T 2e3n_A 28 VEEMVQNHMTYSLQDV--GGDANWQLVVE--EGEMKVYRREVEENG----IVLDPLKATHAVKGVTGHEVCNYFWNVDVR 99 (255)
T ss_dssp HHHHHHHHHHHTTSCC--TTCTTEEEEEE--ETTEEEEEECCEETT----EECCCEEEEEEEETCCHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHhhc--CCCCCcEEEEe--CCCEEEEEEEcCCCC----ceeeeEEEEEEEcCCCHHHHHHHHhCcchH
Confidence 4444444444444333 23468987753 467999999864333 221 123333444 9999999999999999
Q ss_pred chhhhccCCCcceEEeeccCCCCCCceEEEEe----c-ccCCCCcEEEEEeeccC----C---cceEEEEcccChhhhhh
Q 006760 471 PQWDVLTNGNAVQEVAHIANGSNPGNCISVLR----A-INTSQNNMLILQESCID----S---SGSLVVYCPVDLPAINI 538 (632)
Q Consensus 471 ~eWD~Ls~G~~vqe~~~Ia~g~~~gN~VSllr----~-~~~~~~~mliLQes~tD----~---sgS~vVYAPVD~~~m~~ 538 (632)
.+||...- ..+.+-+|. .++ .+++ . ..-+..+..++.....+ . -.-+++.-.++-+..-
T Consensus 100 ~~Wd~~~~--~~~vle~i~----~~~--~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P- 170 (255)
T 2e3n_A 100 NDWETTIE--NFHVVETLA----DNA--IIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAP- 170 (255)
T ss_dssp HHHCCSEE--EEEEEEEEE----TTE--EEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSC-
T ss_pred hhhhhhcc--eeEEEEEcC----CCC--EEEEEEeecCCCcCCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCC-
Confidence 99996531 123333331 122 3333 1 12234566666643332 2 1334444456544211
Q ss_pred hhcCCCCCCCc-----ccCCccEEcCC-CCCCCCCCCCCCCCcCCCCCCCCCCceeEEeeehhhc
Q 006760 539 AMSGEDPSYIP-----LLPSGFTISPD-GHLDQGDGASTSSNVHGNMGSRSSGSLISVAFQILVS 597 (632)
Q Consensus 539 vm~G~dss~v~-----LLPSGF~IlPD-g~~~~~~~~s~s~~~~~~~~~~~~GSlLTvaFQil~~ 597 (632)
..+.+|- .|.+||.|.|- |.- .... ..++|.+|.-.|+=..
T Consensus 171 ----~~~g~VR~~~~~~~~~~~~i~~~~g~~-~l~~-------------~~~~t~vt~~~~~Dp~ 217 (255)
T 2e3n_A 171 ----LNNRCVRAKINVAMICQTLVSPPEGNQ-EISR-------------DNILCKITYVANVNPG 217 (255)
T ss_dssp ----CCSSSEECEEEEEEEEEEEEC---CCC-CCCG-------------GGEEEEEEEEEEEECS
T ss_pred ----CCCCCEEEEEEeeeeeeeEeccCCCCc-cccc-------------CCCcEEEEEEEEeCCC
Confidence 1122222 36788888883 221 0000 1257888888887554
No 29
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=72.48 E-value=3.6 Score=32.23 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=10.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 006760 8 ADNCGLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal 31 (632)
.||..||++++.|+++|..++..+
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 30
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=70.49 E-value=3.1 Score=36.27 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=8.8
Q ss_pred CCCCCCCCCCC
Q 006760 34 VICPSCGGPPV 44 (632)
Q Consensus 34 ~~C~~CGgp~~ 44 (632)
..||-||.+..
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 47999999754
No 31
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=67.59 E-value=11 Score=29.41 Aligned_cols=43 Identities=30% Similarity=0.400 Sum_probs=36.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHh
Q 006760 7 RADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVS 70 (632)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~ 70 (632)
++....|+.+|+.|-+-|.+|-++| ++-|.|=.+||+|++++.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L---------------------~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETL---------------------KEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhh
Confidence 4556679999999999999999998 447788888999999874
No 32
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=67.51 E-value=4.9 Score=31.51 Aligned_cols=24 Identities=25% Similarity=0.087 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 006760 8 ADNCGLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal 31 (632)
.|-..||+||+.||.++..+++.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544443
No 33
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=65.42 E-value=3.1 Score=41.93 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=17.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q 006760 6 ERADNCGLRAENDKIRCENIAIREA 30 (632)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lrea 30 (632)
-+.||..||+||++|+.++.++++.
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l 48 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADL 48 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999988877666655544
No 34
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=64.90 E-value=4.4 Score=41.14 Aligned_cols=39 Identities=31% Similarity=0.447 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhh
Q 006760 12 GLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSS 71 (632)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~ 71 (632)
.|+.+++.|.+.|.+|++++ +++|.|..+||+|++++..
T Consensus 58 eL~~ql~~L~arNe~L~~~L---------------------k~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETL---------------------KEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhcC
Confidence 56777777777777777766 4588888888888888764
No 35
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=64.43 E-value=7.7 Score=27.98 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=25.5
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 006760 4 QHERADNCGLRAENDKIRCENIAIREALK 32 (632)
Q Consensus 4 q~eR~eN~~Lr~ENekLr~EN~~lreal~ 32 (632)
+--|..|...+++.|.|+..|..|.+.++
T Consensus 3 ~~mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 3 GGMRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 34588999999999999999999998875
No 36
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=63.19 E-value=17 Score=27.46 Aligned_cols=45 Identities=29% Similarity=0.417 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhhh
Q 006760 8 ADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIA 73 (632)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~ 73 (632)
+-|.-||....+|+.+|..+. .+||.|-.-=|.|+||+.|+..-+
T Consensus 3 arnaylrkkiarlkkdnlqle---------------------rdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 3 ARNAYLRKKIARLKKDNLQLE---------------------RDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhhhhhhhh---------------------hhHhhHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999998764 368888777788999998886543
No 37
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=61.50 E-value=13 Score=29.91 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=15.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 006760 8 ADNCGLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal 31 (632)
.+...|..+.+.|..||..|+..+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i 46 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERA 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777776655
No 38
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=60.08 E-value=5 Score=28.69 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.3
Q ss_pred HHHHHhhhccHHHHHHHhhhhh
Q 006760 53 QKLRMENAQLKEELDRVSSIAA 74 (632)
Q Consensus 53 q~Lr~ENArLk~El~r~~~~~~ 74 (632)
..|..||..|++|+.|+.+++.
T Consensus 10 EeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 10 EELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHHHHHHHHHhh
Confidence 4599999999999999998764
No 39
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=59.85 E-value=2.5 Score=37.18 Aligned_cols=51 Identities=24% Similarity=0.214 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHH
Q 006760 11 CGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDR 68 (632)
Q Consensus 11 ~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r 68 (632)
-.|-...+++..||.++|..-+.. | +-..+...|..+||.||.+|+.|-+.
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~----~---~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRL----D---ARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc----h---hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346667788888898888874332 1 11234456788999999999999764
No 40
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=59.10 E-value=12 Score=33.63 Aligned_cols=56 Identities=9% Similarity=0.154 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhhhhhc
Q 006760 12 GLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIAAKY 76 (632)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~~k~ 76 (632)
.|-+|..||+-||..||..+++. +.|+.+. +..+..+ .++.+-.=..++++.|.+-
T Consensus 12 eLaaeL~kLqmENK~LKkkl~~~--g~~~p~d--~~LTp~q-----Kea~I~s~~~~Lss~A~~K 67 (110)
T 2oa5_A 12 EMVKEVERLKLENKTLKQKVKSS--GAVSSDD--SILTAAK-----RESIIVSSSRALGAVAMRK 67 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-----------C--CBCCHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCCCCCC--ccCCHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999874 5554221 2223332 2333344455555555443
No 41
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=56.36 E-value=18 Score=28.54 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 006760 9 DNCGLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal 31 (632)
....|..+.+.|..||..|++.+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i 45 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEV 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666555444
No 42
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=52.29 E-value=4.7 Score=33.34 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 006760 9 DNCGLRAENDKIRCENIA 26 (632)
Q Consensus 9 eN~~Lr~ENekLr~EN~~ 26 (632)
||..||.+++.|+.||..
T Consensus 51 en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 51 ENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.36 E-value=15 Score=39.28 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.4
Q ss_pred chhHHHHHHhhhccHHHHHHHhhh
Q 006760 49 YFDEQKLRMENAQLKEELDRVSSI 72 (632)
Q Consensus 49 ~~eeq~Lr~ENArLk~El~r~~~~ 72 (632)
..++|+|+.||+|||.|++.+...
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhh
Confidence 568999999999999999876544
No 44
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=48.83 E-value=13 Score=31.94 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=15.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhC
Q 006760 7 RADNCGLRAENDKIRCENIAIREALKN 33 (632)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n 33 (632)
..||..||++.+.|+.|...||+.|..
T Consensus 49 e~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 49 TAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666655543
No 45
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=48.35 E-value=7.7 Score=36.07 Aligned_cols=30 Identities=17% Similarity=0.417 Sum_probs=27.5
Q ss_pred EEeeeeeecCCchhhhhhccCCCCcchhhh
Q 006760 446 NAATTFWLPIPPQNVFNFFKDERTRPQWDV 475 (632)
Q Consensus 446 sA~tS~wLPvpp~~vFdFLRde~~R~eWD~ 475 (632)
+...|+-+..||+.||+|++|...-.+|..
T Consensus 28 ~~~~si~I~ap~eeVy~~~~D~e~lP~W~~ 57 (156)
T 2qpv_A 28 SRIIHLSVEKPWAEVYDFAANPGNMPRWAA 57 (156)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTCG
T ss_pred ceEEEEEEcCCHHHHHHHHHChhhHHHHHH
Confidence 568899999999999999999999999974
No 46
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=45.70 E-value=1.6e+02 Score=25.89 Aligned_cols=118 Identities=11% Similarity=0.085 Sum_probs=62.4
Q ss_pred eeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEE--EEeeeee
Q 006760 204 SGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYV--LRYCQQI 281 (632)
Q Consensus 204 ~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~f--LRyckql 281 (632)
+..|...+.++-+.|.|.+.|.+.+|.+ ..++++.. |. ....+.+. .-|.+.-+. .+|...-
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~----~~~~~~~~-------~~---~~~~~~~~--~g~~~~~~~~~~~~~~~~ 71 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGC----KSLELIGE-------DK---YKADLQIG--IAAVKGKYDAIIEVTDIK 71 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTE----EEEEEEET-------TE---EEEEEEEC--CGGGCEEEEEEEEEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCc----eEeEEeCC-------Ce---EEEEEEEE--eeeEEEEEEEEEEEEecC
Confidence 4456778899999999999999999875 45666532 11 12222221 112222222 2443334
Q ss_pred cCCeEEEEEEecCCCCCCCccceeccCCcceEEeCCCCceEEEEEEeeeecCCCccchhhhhhh
Q 006760 282 EQGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPIHRLYQDLI 345 (632)
Q Consensus 282 ~~G~WaVvDvSld~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVEH~e~d~~~~vh~lyrpl~ 345 (632)
+...|++.-..-+. .++. +.---+-+.+..+|.|+|+|--.+++... +..+..+++
T Consensus 72 ~~~~~~~~~~~~~~---~~~~---~~~~~~~l~~~~~~gT~v~~~~~~~~~g~--l~~~~~~l~ 127 (162)
T 2pcs_A 72 PPYHYKLLVNGEGG---PGFV---NAEGVIDLTPINDECTQLTYTYSAEVGGK--VAAIGQRML 127 (162)
T ss_dssp TTTEEEEEEEEEET---TEEE---EEEEEEEEEESSSSEEEEEEEEEEEEESG--GGGGCHHHH
T ss_pred CCcEEEEEEEecCC---CccE---EEEEEEEEEecCCCcEEEEEEEEEEECCC--HHHhhHHHH
Confidence 44555444332221 0110 01111335666778899999877776432 344455555
No 47
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=45.05 E-value=36 Score=29.06 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=17.5
Q ss_pred HHHHhhhccHHHHHHHhhhhhh
Q 006760 54 KLRMENAQLKEELDRVSSIAAK 75 (632)
Q Consensus 54 ~Lr~ENArLk~El~r~~~~~~k 75 (632)
+|.-|++.||+|++++..++..
T Consensus 57 ~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 57 QKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888999998888887753
No 48
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=44.99 E-value=89 Score=28.69 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=60.8
Q ss_pred ceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeec
Q 006760 203 DSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIE 282 (632)
Q Consensus 203 ~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~ 282 (632)
.+..|...+.++-++|.|-..| +.+|.++..+. ++ .|..|+.-|++..+ . . ..+| .++.|-...-
T Consensus 6 ~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e---~~-eg~~~~~vGsvR~~--g----g---~v~E-rl~~~D~~~~ 70 (160)
T 3p51_A 6 NSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCK---KV-GGGGGYSVGARRLL--N----G---EFLD-TLIAYSEIER 70 (160)
T ss_dssp EEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEE---EE-SSCCTTCTTCEEEE--T----T---TEEE-EEEEEETTTT
T ss_pred EEEEECCCHHHHHHHHhCcCCC-eEccCceEEEE---EE-ecCCCCCCCCEEEE--C----C---EEEE-EEEEEcCCCc
Confidence 3455667788999999999999 99999876444 33 34444445787665 1 1 2233 2222221000
Q ss_pred CCeEEEEEEecCCCCCCCccceeccCCcceEEeCC-CCceEEEEEEeeeecC
Q 006760 283 QGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLP-NGYSKVTWVEHLEIED 333 (632)
Q Consensus 283 ~G~WaVvDvSld~~~~~~~~r~rrlPSGclIq~~~-nG~skVtwVEH~e~d~ 333 (632)
-=+|-|++-.+-.. .. ..+..=+=.-+.+.+ +|.|.|+|--.++..+
T Consensus 71 ~~sY~ii~g~l~~~--~~--~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~ 118 (160)
T 3p51_A 71 RIMYSMDEGPSPVS--SG--EIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS 118 (160)
T ss_dssp EEEEEEEECSTTSS--TT--TEEEEEEEEEEEEETTTTEEEEEEEEEEEESC
T ss_pred EEEEEEecCCCccc--cc--ceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH
Confidence 01455555211100 00 011111222245554 7899999988887654
No 49
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=44.53 E-value=17 Score=28.70 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=22.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006760 5 HERADNCGLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 5 ~eR~eN~~Lr~ENekLr~EN~~lreal 31 (632)
.-..+|..|+.|...|+.|+..|++-+
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345789999999999999999988765
No 50
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=44.31 E-value=17 Score=29.11 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=24.3
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 006760 4 QHERADNCGLRAENDKIRCENIAIREALK 32 (632)
Q Consensus 4 q~eR~eN~~Lr~ENekLr~EN~~lreal~ 32 (632)
+.-..+|..|+.+.+.|+.|+..||+-|.
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567899999999999999999998764
No 51
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=43.04 E-value=12 Score=29.17 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=14.3
Q ss_pred HHHHhhhccHHHHHHHhhhhhhc
Q 006760 54 KLRMENAQLKEELDRVSSIAAKY 76 (632)
Q Consensus 54 ~Lr~ENArLk~El~r~~~~~~k~ 76 (632)
-||.||..||.||+-=+..++|+
T Consensus 14 ~Lk~ENshLrrEL~dNS~~lskL 36 (54)
T 1deb_A 14 ALKMENSNLRQELEDNSNHLTKL 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHhhHHHHHHH
Confidence 46777777777776555554443
No 52
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=42.70 E-value=10 Score=31.89 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=18.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Q 006760 7 RADNCGLRAENDKIRCENIAIREALK 32 (632)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~ 32 (632)
..||..|++|.+.|+.|...||+.|.
T Consensus 49 ~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 49 TAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777776553
No 53
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=41.57 E-value=35 Score=29.28 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=5.6
Q ss_pred cHHHHHHHhhhhh
Q 006760 62 LKEELDRVSSIAA 74 (632)
Q Consensus 62 Lk~El~r~~~~~~ 74 (632)
|+.|++++..++.
T Consensus 62 L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 62 LSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 54
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.80 E-value=12 Score=33.05 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006760 12 GLRAENDKIRCENIAIR 28 (632)
Q Consensus 12 ~Lr~ENekLr~EN~~lr 28 (632)
.||.|.|.|+.||.+||
T Consensus 16 ~lr~ei~~Le~E~~rLr 32 (100)
T 1go4_E 16 TLRLKVEELEGERSRLE 32 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555544433
No 55
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=39.76 E-value=6.9 Score=33.12 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=25.1
Q ss_pred EeeeeeecCCchhhhhhccCCCCcchhhh
Q 006760 447 AATTFWLPIPPQNVFNFFKDERTRPQWDV 475 (632)
Q Consensus 447 A~tS~wLPvpp~~vFdFLRde~~R~eWD~ 475 (632)
...+..++.||+.||++|.|..+..+|.-
T Consensus 4 ~~~~~~i~ap~~~V~~~l~d~~~~~~w~p 32 (147)
T 2d4r_A 4 VRAERYIPAPPERVYRLAKDLEGLKPYLK 32 (147)
T ss_dssp EEEEEEESSCHHHHHHHHHCHHHHGGGCT
T ss_pred EEEEEEeCCCHHHHHHHHhChhhhhhhcc
Confidence 34677889999999999999999999963
No 56
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=38.45 E-value=15 Score=32.50 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=26.2
Q ss_pred eeeeeecCCchhhhhhccCCCCcchhhhcc
Q 006760 448 ATTFWLPIPPQNVFNFFKDERTRPQWDVLT 477 (632)
Q Consensus 448 ~tS~wLPvpp~~vFdFLRde~~R~eWD~Ls 477 (632)
..|..+|.||+.||+++.|-.+..+|---+
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~ 34 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWI 34 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSC
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCc
Confidence 467888999999999999999999997544
No 57
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=38.28 E-value=15 Score=44.21 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=38.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhhh
Q 006760 7 RADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIA 73 (632)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~ 73 (632)
..|...|+.|.+++..|+..+.+++.... .++.-...+|..||++|+++++.+....
T Consensus 990 ~~e~~~l~~~~~~~~ke~~~lee~~~~~~----------~~L~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQTEKKTIEEWADKYK----------HETEQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777777777777777664432 1223344579999999999999887543
No 58
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=37.62 E-value=25 Score=25.60 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 006760 19 KIRCENIAIRE 29 (632)
Q Consensus 19 kLr~EN~~lre 29 (632)
+||.||..++|
T Consensus 25 ~Lk~eN~eL~E 35 (37)
T 1t6f_A 25 RLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHhhHHHHh
Confidence 45555555543
No 59
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=35.90 E-value=32 Score=28.80 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=21.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 006760 6 ERADNCGLRAENDKIRCENIAIREALK 32 (632)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lreal~ 32 (632)
-+.+|..|.+|++.|+.||..|+..|.
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888889999999988887764
No 60
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=35.57 E-value=9.4 Score=33.57 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=26.0
Q ss_pred EEeeeeeecCCchhhhhhccCCCCcchhh
Q 006760 446 NAATTFWLPIPPQNVFNFFKDERTRPQWD 474 (632)
Q Consensus 446 sA~tS~wLPvpp~~vFdFLRde~~R~eWD 474 (632)
....+..+|.||++||++|.|..+..+|-
T Consensus 14 ~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~ 42 (157)
T 2ns9_A 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAF 42 (157)
T ss_dssp EEEEEEEESSCHHHHHHHHTCHHHHGGGS
T ss_pred EEeeEEEEcCCHHHHHHHHcCHHHHHhhC
Confidence 45677888999999999999999999996
No 61
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=34.97 E-value=8.4 Score=34.41 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=25.0
Q ss_pred EeeeeeecCCchhhhhhccCCCCcchhh
Q 006760 447 AATTFWLPIPPQNVFNFFKDERTRPQWD 474 (632)
Q Consensus 447 A~tS~wLPvpp~~vFdFLRde~~R~eWD 474 (632)
-..++.+|.||++||++|.|..+..+|-
T Consensus 5 i~~~~~i~ap~e~Vw~~l~D~e~~~~w~ 32 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKLMDPSILSKCI 32 (162)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHS
T ss_pred EeeEEEecCCHHHHHHHhcCHHHHHhhC
Confidence 3467888999999999999999999996
No 62
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=34.12 E-value=44 Score=26.41 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 006760 11 CGLRAENDKIRCENIAIREA 30 (632)
Q Consensus 11 ~~Lr~ENekLr~EN~~lrea 30 (632)
..|..+-+.|..||..|+..
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~ 44 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELAST 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555543
No 63
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=33.84 E-value=18 Score=30.98 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=24.6
Q ss_pred EeeeeeecCCchhhhhhccCCCCcchh
Q 006760 447 AATTFWLPIPPQNVFNFFKDERTRPQW 473 (632)
Q Consensus 447 A~tS~wLPvpp~~vFdFLRde~~R~eW 473 (632)
...+..++.||++||++|.|..+..+|
T Consensus 7 i~~~~~i~ap~e~Vw~~ltd~~~~~~W 33 (146)
T 2leq_A 7 AQVKTVINAPIEKVWEALVNPEIIKEY 33 (146)
T ss_dssp EEEEEEECSCHHHHHHHHSCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHcCHHHhcee
Confidence 456778899999999999999999999
No 64
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.69 E-value=40 Score=27.95 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=20.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhC
Q 006760 7 RADNCGLRAENDKIRCENIAIREALKN 33 (632)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n 33 (632)
+.++..|+.|.+.|+.||..++..+..
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888877754
No 65
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.98 E-value=34 Score=29.14 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=5.5
Q ss_pred hhhhhHHHHHHHH
Q 006760 7 RADNCGLRAENDK 19 (632)
Q Consensus 7 R~eN~~Lr~ENek 19 (632)
|.+|..|.+||+.
T Consensus 33 KekN~~L~~e~~e 45 (81)
T 2jee_A 33 KEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 66
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=32.54 E-value=77 Score=26.82 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=14.8
Q ss_pred HHHHhhhccHHHHHHHhhhhh
Q 006760 54 KLRMENAQLKEELDRVSSIAA 74 (632)
Q Consensus 54 ~Lr~ENArLk~El~r~~~~~~ 74 (632)
+|+-||..||+-++.+..++.
T Consensus 52 ~LkeEN~~L~el~~~~~~lae 72 (79)
T 2zxx_A 52 RLRKENKDLAEVAEHVQYMAE 72 (79)
T ss_dssp HHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477888888877777665543
No 67
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=32.33 E-value=21 Score=31.00 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=24.3
Q ss_pred eeeeeecCCchhhhhhccCCCCcchhh
Q 006760 448 ATTFWLPIPPQNVFNFFKDERTRPQWD 474 (632)
Q Consensus 448 ~tS~wLPvpp~~vFdFLRde~~R~eWD 474 (632)
..+..++.||++||+.|-|..+..+|-
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W~ 30 (135)
T 3q6a_A 4 ITKMQVDVPRETVFEAFVDPEKIGGFW 30 (135)
T ss_dssp EEEEEESSCHHHHHHHHHCTTTGGGTS
T ss_pred EEEEEeCCCHHHHHHHHcCHHHhcccC
Confidence 457788999999999999999999994
No 68
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=32.21 E-value=54 Score=29.63 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=38.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchh-----HHHHHHhhhccHHHHHHHh
Q 006760 6 ERADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFD-----EQKLRMENAQLKEELDRVS 70 (632)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~e-----eq~Lr~ENArLk~El~r~~ 70 (632)
-+.|...||.|+++|+.|..++-..|++-+ ..-+-.++ .|+.+.||-+||.|++.+.
T Consensus 20 Lkreie~lk~ele~l~~E~q~~v~ql~~~i--------~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRVVLQLKGHV--------SELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888777776421 11111223 4567788999999998654
No 69
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.98 E-value=78 Score=25.09 Aligned_cols=40 Identities=28% Similarity=0.304 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHH
Q 006760 7 RADNCGLRAENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELD 67 (632)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~ 67 (632)
+.....|..+-+.|..||..|++.+ +.|+.|.+.|+.-+.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei---------------------~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEI---------------------ANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
No 70
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=31.61 E-value=16 Score=32.94 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=26.4
Q ss_pred EEeeeeeecCCchhhhhhccCCCCcchhhh
Q 006760 446 NAATTFWLPIPPQNVFNFFKDERTRPQWDV 475 (632)
Q Consensus 446 sA~tS~wLPvpp~~vFdFLRde~~R~eWD~ 475 (632)
....|+.++.|++.||+|+.|..+-.+|--
T Consensus 5 ~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p 34 (155)
T 3ggn_A 5 VVRDAVTIGKPAEQLYAVWRDLPGLPLLMT 34 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHST
T ss_pred EEEEEEEEcCCHHHHHHHHhCHHHhHHHhh
Confidence 346788899999999999999999999963
No 71
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=31.46 E-value=72 Score=27.26 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=10.3
Q ss_pred HHHhhhccHHHHHHHhhhhh
Q 006760 55 LRMENAQLKEELDRVSSIAA 74 (632)
Q Consensus 55 Lr~ENArLk~El~r~~~~~~ 74 (632)
++.|-++||+|.+++..+|.
T Consensus 50 ~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 50 KDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555443
No 72
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=31.42 E-value=41 Score=28.73 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 006760 9 DNCGLRAENDKIRCENIAIRE 29 (632)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lre 29 (632)
||..|..++++|+.|+..+|+
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~ 67 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666555555555544443
No 73
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=31.05 E-value=50 Score=25.76 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 006760 13 LRAENDKIRCENIAIREALK 32 (632)
Q Consensus 13 Lr~ENekLr~EN~~lreal~ 32 (632)
|-.+-|-||.||-.+|..|+
T Consensus 8 L~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44455666666666666664
No 74
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.33 E-value=30 Score=24.83 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.8
Q ss_pred HHHHHhhhccHHHHHHHhhhhh
Q 006760 53 QKLRMENAQLKEELDRVSSIAA 74 (632)
Q Consensus 53 q~Lr~ENArLk~El~r~~~~~~ 74 (632)
..|..||.-|++|.+|+.+++.
T Consensus 11 EeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 11 XELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhHHHHHHHHHHHHh
Confidence 3489999999999999998764
No 75
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=29.10 E-value=30 Score=33.06 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh---------CCCCCCCCCC
Q 006760 10 NCGLRAENDKIRCENIAIREALK---------NVICPSCGGP 42 (632)
Q Consensus 10 N~~Lr~ENekLr~EN~~lreal~---------n~~C~~CGgp 42 (632)
+..||++.++++.||+ +++.. ...||.||+.
T Consensus 107 s~elk~~~e~~~~e~l--~~~~~~~~~~~~t~~~~Cp~C~~~ 146 (178)
T 3po3_S 107 PAPLKQKIEEIAKQNL--YNAQGATIERSVTDRFTCGKCKEK 146 (178)
T ss_dssp CSHHHHHHHHHHHHHH--HHTBCCCCCCCCBSSSCCSSSCCS
T ss_pred CHHHHHHHHHHHHHHH--HHhhhccccCCCcCCcCCCCCCCC
Confidence 4578889999888874 44422 1369999974
No 76
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.85 E-value=20 Score=28.43 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=17.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006760 6 ERADNCGLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lreal 31 (632)
-..+|..|+.|.+.|+.|+..|+..+
T Consensus 34 L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 34 LKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778888888888777776654
No 77
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=26.52 E-value=38 Score=28.66 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=15.2
Q ss_pred hhhhHHHHHHH-------HHHHHHHHHHHHH
Q 006760 8 ADNCGLRAEND-------KIRCENIAIREAL 31 (632)
Q Consensus 8 ~eN~~Lr~ENe-------kLr~EN~~lreal 31 (632)
.||..|..+.+ +|+.||..+++..
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888877666 5555665555544
No 78
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5
Probab=26.13 E-value=22 Score=31.42 Aligned_cols=27 Identities=7% Similarity=0.225 Sum_probs=23.8
Q ss_pred eeeeeecCCchhhhhhccCCCCcchhh
Q 006760 448 ATTFWLPIPPQNVFNFFKDERTRPQWD 474 (632)
Q Consensus 448 ~tS~wLPvpp~~vFdFLRde~~R~eWD 474 (632)
..+.-++.||++||+.|-|+.+..+|-
T Consensus 14 ~~~~~i~ap~e~Vw~altdp~~~~~W~ 40 (145)
T 1x53_A 14 TLKETFLTSPEELYRVFTTQELVQAFT 40 (145)
T ss_dssp EEEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEEECCCHHHHHHHhCCHHHHHHhc
Confidence 456678999999999999999999993
No 79
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=26.00 E-value=31 Score=30.79 Aligned_cols=44 Identities=34% Similarity=0.461 Sum_probs=27.3
Q ss_pred CCCCCCCCCCCCCCchhHHHHHH---------hhhccHHHHHHHhhhhhhccC
Q 006760 35 ICPSCGGPPVTEDSYFDEQKLRM---------ENAQLKEELDRVSSIAAKYIG 78 (632)
Q Consensus 35 ~C~~CGgp~~~~~~~~eeq~Lr~---------ENArLk~El~r~~~~~~k~~g 78 (632)
.|.+||.|....-...=|+.+|. +=..|.+|++++..-+.+|+|
T Consensus 71 aa~~~Ga~~L~~~c~~LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~~ 123 (123)
T 3iqt_A 71 SCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG 123 (123)
T ss_dssp HHTTSCCHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58999998533222222334443 334577888888887877765
No 80
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=25.66 E-value=1.2e+02 Score=26.28 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCchhHHHHHHhhhccHHHHHHHhhhhhhccC
Q 006760 15 AENDKIRCENIAIREALKNVICPSCGGPPVTEDSYFDEQKLRMENAQLKEELDRVSSIAAKYIG 78 (632)
Q Consensus 15 ~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~~k~~g 78 (632)
++.+.|..||..++..+ ++|+.||++++.|+|.+..-...+.|
T Consensus 48 ~q~~~LE~e~~~L~~e~---------------------~~L~~e~~~~~~e~d~~k~k~~~L~~ 90 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQV---------------------EQLKQEVSRLARERDAYKVKSEKLAN 90 (90)
T ss_dssp HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhcC
No 81
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=25.48 E-value=14 Score=30.70 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=15.6
Q ss_pred hhHHHHHHhhhccHHHHHHHh
Q 006760 50 FDEQKLRMENAQLKEELDRVS 70 (632)
Q Consensus 50 ~eeq~Lr~ENArLk~El~r~~ 70 (632)
-|..+|+.||++||.|++-+.
T Consensus 66 ~ei~~L~~e~~~L~~e~~~Lk 86 (97)
T 2jn6_A 66 EQIRQLKKENALQRARTRHPA 86 (97)
T ss_dssp HHHHHHHHCGGGGGGTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888887443
No 82
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=25.36 E-value=33 Score=30.28 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=24.4
Q ss_pred EeeeeeecCCchhhhhhccCCCCcchhh
Q 006760 447 AATTFWLPIPPQNVFNFFKDERTRPQWD 474 (632)
Q Consensus 447 A~tS~wLPvpp~~vFdFLRde~~R~eWD 474 (632)
...|+-++.||.+||++|.|-.+-.+|.
T Consensus 4 v~~si~I~ap~e~Vw~~l~d~~~~~~w~ 31 (151)
T 2le1_A 4 LRRSVEVAAPAADVWTLVGDFSAIHRWH 31 (151)
T ss_dssp EEEEEEESSCHHHHHHHHTTSGGGGGTC
T ss_pred EEEEEEecCCHHHHHHHHhCcCcHHHhc
Confidence 3567888999999999999988888885
No 83
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=25.29 E-value=25 Score=32.20 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=26.1
Q ss_pred EEeeeeeecCCchhhhhhccCCCCcchhh
Q 006760 446 NAATTFWLPIPPQNVFNFFKDERTRPQWD 474 (632)
Q Consensus 446 sA~tS~wLPvpp~~vFdFLRde~~R~eWD 474 (632)
....|+.++.||+.||+++.|-....+|-
T Consensus 6 ~v~~si~I~ap~~~V~~~v~D~~~~p~~~ 34 (172)
T 3tfz_A 6 HVEHTVTVAAPADLVWEVLADVLGYADIF 34 (172)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHC
T ss_pred EEEEEEEeCCCHHHHHHHHHhHHHHHhhC
Confidence 45678889999999999999999999995
No 84
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5
Probab=24.85 E-value=21 Score=31.14 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=24.8
Q ss_pred EeeeeeecCCchhhhhhccCCCCcchhh
Q 006760 447 AATTFWLPIPPQNVFNFFKDERTRPQWD 474 (632)
Q Consensus 447 A~tS~wLPvpp~~vFdFLRde~~R~eWD 474 (632)
...+..++.||++||+.|-|..+..+|-
T Consensus 10 i~~~~~i~ap~e~Vw~~ltd~~~~~~W~ 37 (143)
T 1xn6_A 10 IKQTIVFNASIQKVWSVVSTAEGIASWF 37 (143)
T ss_dssp EEEEEEESSCHHHHHHTTSCSHHHHTTS
T ss_pred EEEEEEEcCCHHHHHHHHhCHhHHHHhc
Confidence 3467788999999999999999999995
No 85
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=24.73 E-value=64 Score=25.56 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 006760 11 CGLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 11 ~~Lr~ENekLr~EN~~lreal 31 (632)
+.||-|...|+.||..|+.+|
T Consensus 13 YaLkDqV~eL~qe~k~m~k~l 33 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSL 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999998
No 86
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.71 E-value=37 Score=26.51 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=16.9
Q ss_pred hHHHHHHhhhccHHHHHHHhhh
Q 006760 51 DEQKLRMENAQLKEELDRVSSI 72 (632)
Q Consensus 51 eeq~Lr~ENArLk~El~r~~~~ 72 (632)
+..+|..||+.|++|++.+...
T Consensus 30 ~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 30 RVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999998877653
No 87
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=24.57 E-value=3.5 Score=34.55 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=8.6
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 006760 8 ADNCGLRAENDKIRCENIA 26 (632)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~ 26 (632)
.|+..|++||..|+.||.-
T Consensus 66 ~ei~~L~~e~~~L~~e~~~ 84 (97)
T 2jn6_A 66 EQIRQLKKENALQRARTRH 84 (97)
T ss_dssp HHHHHHHHCGGGGGGTTSC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 88
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=24.55 E-value=45 Score=23.96 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=18.9
Q ss_pred HHHHHhhhccHHHHHHHhhhhh
Q 006760 53 QKLRMENAQLKEELDRVSSIAA 74 (632)
Q Consensus 53 q~Lr~ENArLk~El~r~~~~~~ 74 (632)
..|..+|..|.+|+.|+..++.
T Consensus 11 EeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 11 EEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHHc
Confidence 4589999999999999998754
No 89
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.83 E-value=74 Score=23.90 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=22.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhC
Q 006760 7 RADNCGLRAENDKIRCENIAIREALKN 33 (632)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n 33 (632)
-+-|+.|..-.-.|..||.-||+-++|
T Consensus 16 e~~naeLEervstLq~EN~mLRqvl~n 42 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLRHILKN 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcC
Confidence 355788888888899999999988775
No 90
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=23.57 E-value=1.1e+02 Score=28.08 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 006760 9 DNCGLRAENDKIRCENIAIR 28 (632)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lr 28 (632)
.|..|+.||++|+.||..+.
T Consensus 23 ~n~~l~~eN~~Lk~e~e~l~ 42 (155)
T 2oto_A 23 QNIRLRHENKDLKARLENAM 42 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777664
No 91
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.56 E-value=1.1e+02 Score=28.21 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=19.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006760 6 ERADNCGLRAENDKIRCENIAIREAL 31 (632)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lreal 31 (632)
.+.++..|+++.+.+..|...|++-+
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el 98 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHEL 98 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777778877777777777766
No 92
>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A
Probab=23.43 E-value=23 Score=31.66 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=24.3
Q ss_pred EeeeeeecCCchhhhhhccCCCCcchh
Q 006760 447 AATTFWLPIPPQNVFNFFKDERTRPQW 473 (632)
Q Consensus 447 A~tS~wLPvpp~~vFdFLRde~~R~eW 473 (632)
...+..++.||++||++|-|..+..+|
T Consensus 12 i~~~~~i~Ap~e~Vw~altd~~~~~~W 38 (152)
T 2kew_A 12 ITKSITLEAPIQKVWETVSTSEGIAKW 38 (152)
T ss_dssp EEEEEEECSCHHHHHHHSSSSHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHhCHHHHHHh
Confidence 346778899999999999999999999
No 93
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.18 E-value=40 Score=27.01 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=16.3
Q ss_pred hHHHHHHhhhccHHHHHHHhhhh
Q 006760 51 DEQKLRMENAQLKEELDRVSSIA 73 (632)
Q Consensus 51 eeq~Lr~ENArLk~El~r~~~~~ 73 (632)
+..+|..||+.|+.|++++...+
T Consensus 38 ~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 38 KVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888876543
No 94
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=23.12 E-value=1e+02 Score=30.39 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=12.5
Q ss_pred HHHHhhhccHHHHHHHhhh---hhhccCCCCCCC
Q 006760 54 KLRMENAQLKEELDRVSSI---AAKYIGRPISQL 84 (632)
Q Consensus 54 ~Lr~ENArLk~El~r~~~~---~~k~~g~~~~~~ 84 (632)
+|+.||..||+=.+.+..+ +.+++|.+..++
T Consensus 133 ~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~ 166 (209)
T 2wvr_A 133 RLKKENKELAEVAEHVQYMAELIERLNGEPLDNF 166 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 3555555555444333333 456677764433
No 95
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=22.28 E-value=4e+02 Score=23.40 Aligned_cols=134 Identities=10% Similarity=0.019 Sum_probs=65.5
Q ss_pred ceeeEEechhhHHHHhCCchhhhhhcccccccceEeEEeecCcCCCCCCeEEEEEEeeecccccccceeeEEEEeeeeec
Q 006760 203 DSGVVIMNGLALVDMFMDCSKWVELFPTIVSMAKTIEVISSGMMGGHSGSLLLMYEELQVLSPVVPTREFYVLRYCQQIE 282 (632)
Q Consensus 203 ~~gvV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqLM~aEl~v~SPLVP~Re~~fLRyckql~ 282 (632)
.+..|...+.++-+.+.|.+.|.+.+|.+. .++++.. |.. -+.++ + |.=+.+.-+..||.....
T Consensus 8 ~s~~I~ap~e~V~~~~~D~e~~p~w~p~~~----~v~~~~~-------~~~-~~~~~--~--~~G~~~~~~~~~v~e~~p 71 (155)
T 3ggn_A 8 DAVTIGKPAEQLYAVWRDLPGLPLLMTHLR----SVEVLDD-------KRS-RWTVE--A--PAPLGTVSWEAELTADEP 71 (155)
T ss_dssp EEEEESSCHHHHHHHHHCGGGHHHHSTTCC----EEEECSS-------SEE-EEEEE--C--CTTTCEEEEEEEEEEEET
T ss_pred EEEEEcCCHHHHHHHHhCHHHhHHHhhhce----EEEEecC-------Cee-EEEEE--e--cCCcceEEEEEEEEEecC
Confidence 345677788999999999999999998753 4556532 111 11222 2 321245455677776555
Q ss_pred CCeEEEEEEecCCCCCCCccceeccCCcceEEeCC-CCceEEEEEEeeeecCCCccchhhhhhhcccchhhHHHHHHHHH
Q 006760 283 QGSWAVVNVSYDSPQFSSQCQSHRFPSGCLIQDLP-NGYSKVTWVEHLEIEDRTPIHRLYQDLIQSGMAFGADRWLATLQ 361 (632)
Q Consensus 283 ~G~WaVvDvSld~~~~~~~~r~rrlPSGclIq~~~-nG~skVtwVEH~e~d~~~~vh~lyrpl~~Sg~afGA~RWlatLq 361 (632)
+... +-.+.++.. .... .-+-.++.+ +|.|+|++.-+.+....- +-.++.+++ +.+ ++|++..-.
T Consensus 72 ~~~i--~~~~~~g~~-~~~~------g~~~F~~~~~~~gT~V~~~~~~~~~~~~-l~~~~~~~~--~~~--~~~~v~~~l 137 (155)
T 3ggn_A 72 GKRI--AWRSLPGAR-IENS------GEVLFRPAPGARGTEVVVRLTYRPPGGS-AGAVIARMF--NQE--PSQQLRDDL 137 (155)
T ss_dssp TTEE--EEEECTTCS-SCEE------EEEEEEECSSSSCEEEEEEEEEC-------------------C--HHHHHHHHH
T ss_pred CCEE--EEEECCCCC-cceE------EEEEEEECCCCCceEEEEEEEEECCCcH-HHHHHHHHh--hhh--HHHHHHHHH
Confidence 5442 333444321 0111 112246674 568999997666654322 333333333 111 466655444
Q ss_pred HHHHH
Q 006760 362 RMCER 366 (632)
Q Consensus 362 R~cer 366 (632)
+...+
T Consensus 138 ~r~k~ 142 (155)
T 3ggn_A 138 MRFKR 142 (155)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 96
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5
Probab=21.79 E-value=21 Score=30.82 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.1
Q ss_pred eeeeecCCchhhhhhccCCCCcchhh
Q 006760 449 TTFWLPIPPQNVFNFFKDERTRPQWD 474 (632)
Q Consensus 449 tS~wLPvpp~~vFdFLRde~~R~eWD 474 (632)
.+..++.||++||++|-|..+..+|-
T Consensus 7 ~~~~i~ap~e~Vw~altd~~~~~~W~ 32 (147)
T 1z94_A 7 LHRVLSAPPERVYRAFLDPLALAKWL 32 (147)
T ss_dssp EEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhhcc
Confidence 45578999999999999999999993
No 97
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=21.66 E-value=55 Score=23.38 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=18.7
Q ss_pred HHHHHhhhccHHHHHHHhhhhh
Q 006760 53 QKLRMENAQLKEELDRVSSIAA 74 (632)
Q Consensus 53 q~Lr~ENArLk~El~r~~~~~~ 74 (632)
..|..||..|.+|+.|+.+++.
T Consensus 10 EeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 10 XEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHHHHHc
Confidence 3488999999999999998764
No 98
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.61 E-value=1.3e+02 Score=29.71 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.8
Q ss_pred HHHHhhhccHHHHHHHhhhhhh
Q 006760 54 KLRMENAQLKEELDRVSSIAAK 75 (632)
Q Consensus 54 ~Lr~ENArLk~El~r~~~~~~k 75 (632)
+|..|.++||+|++++..++..
T Consensus 126 ~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 126 QKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999998764
No 99
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.60 E-value=51 Score=27.14 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=8.7
Q ss_pred hHHHHHHhhhccHHHHH
Q 006760 51 DEQKLRMENAQLKEELD 67 (632)
Q Consensus 51 eeq~Lr~ENArLk~El~ 67 (632)
|.+.||.++.+|..|+.
T Consensus 51 en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 51 ENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555555554
No 100
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.19 E-value=71 Score=28.17 Aligned_cols=16 Identities=38% Similarity=0.621 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 006760 13 LRAENDKIRCENIAIR 28 (632)
Q Consensus 13 Lr~ENekLr~EN~~lr 28 (632)
|..|.++||.||.+|+
T Consensus 70 Le~everL~~ENq~L~ 85 (104)
T 3s9g_A 70 LELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555555544
No 101
>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}
Probab=20.11 E-value=24 Score=30.95 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=23.6
Q ss_pred eeeeeecCCchhhhhhccCCCCcchh
Q 006760 448 ATTFWLPIPPQNVFNFFKDERTRPQW 473 (632)
Q Consensus 448 ~tS~wLPvpp~~vFdFLRde~~R~eW 473 (632)
..+.-++.||++||++|-|..+..+|
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W 29 (142)
T 2lcg_A 4 TVETTVAAPVGKVWRAYTTPEDIKQW 29 (142)
T ss_dssp EEEEEESSCHHHHHHHTTCHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhcC
Confidence 45677899999999999999999999
Done!