BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006762
(632 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E8U|A Chain A, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With
A Small Segment Of Adjacent Coiled-Coil Region
pdb|4E8U|C Chain C, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With
A Small Segment Of Adjacent Coiled-Coil Region
Length = 172
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 95/160 (59%), Gaps = 5/160 (3%)
Query: 118 VWPWMGIIVNI-VMETKDRGSFLDSGYWLKRFAV---FKPVEVRIFWNEENPTAQAVVKF 173
V+PW GI+VNI + +D S +SG L+ + F P VR WN + A+V+F
Sbjct: 10 VYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEF 69
Query: 174 NNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQ 233
N DWNG F+KA+ D GK+ W+ +K+ P L +YGW ARADD IGE LR+
Sbjct: 70 NKDWNGLHNGLLFDKAYTVDGHGKKDWL-KKDGPKLGLYGWIARADDYNGNNIIGENLRK 128
Query: 234 EGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQ 273
G L+T++++ +E+A+ + +V +L ++ K +D+ E++
Sbjct: 129 TGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIE 168
>pdb|4E9L|A Chain A, Fdec, A Novel Broadly Conserved Escherichia Coli Adhesin
Eliciting Protection Against Urinary Tract Infections
Length = 420
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 408 DAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDEL---ESKI----DDLDEME 460
D ++ + G+L+VM L +D AA K+ + D L +SK+ D + E
Sbjct: 151 DGTWTAQISLGTTAGELDVMPKLNGQDAAANAAKVTVVADALSSNQSKVSVAEDHVKAGE 210
Query: 461 SLNKTLIAKERQSN 474
S TL+AK+ N
Sbjct: 211 STTVTLVAKDAHGN 224
>pdb|2B9M|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Ribosomal Subunit, Trnas,
Mrna And Release Factor Rf2 From A Crystal Structure Of
The Whole Ribosomal Complex". The Entire Crystal
Structure Contains One 70s Ribosome, Trnas, Mrna And
Release Factor Rf2 And Is Described In Remark 400
Length = 365
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 348 ERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQL 407
ER Q+L+ R D+ +L +E++ D ++ E ++ +EA +L + +
Sbjct: 4 ERLAQRLEGLRGYLDIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAA----RLRRTV 59
Query: 408 DAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLN 463
D + LE DL+G LE+M+ L E+ A++ +++E K+D+L LN
Sbjct: 60 DTFRSLE---SDLQGLLELMEELPAEEREALKPELEEAA----KKLDELYHQTLLN 108
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 10/98 (10%)
Query: 387 EEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMN 446
E +++E EE + +LQ EK D + +++ E ++L E L ++ ++ K+KEMN
Sbjct: 877 EARRKELEEKMVSLLQ-EKN-DLQLQVQAEQDNLADAEERCDQL-IKNKIQLEAKVKEMN 933
Query: 447 DELESKIDDLDEMESLNKTLIAKERQSNDELQEARREL 484
+ LE DE E +N L AK+R+ DE E +R++
Sbjct: 934 ERLE------DE-EEMNAELTAKKRKLEDECSELKRDI 964
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 10/98 (10%)
Query: 387 EEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMN 446
E +++E EE + +LQ EK D + +++ E ++L E L ++ ++ K+KEMN
Sbjct: 877 EARRKELEEKMVSLLQ-EKN-DLQLQVQAEQDNLADAEERCDQL-IKNKIQLEAKVKEMN 933
Query: 447 DELESKIDDLDEMESLNKTLIAKERQSNDELQEARREL 484
+ LE DE E +N L AK+R+ DE E +R++
Sbjct: 934 ERLE------DE-EEMNAELTAKKRKLEDECSELKRDI 964
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,739,964
Number of Sequences: 62578
Number of extensions: 742984
Number of successful extensions: 2117
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 2005
Number of HSP's gapped (non-prelim): 161
length of query: 632
length of database: 14,973,337
effective HSP length: 105
effective length of query: 527
effective length of database: 8,402,647
effective search space: 4428194969
effective search space used: 4428194969
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)