Query 006762
Match_columns 632
No_of_seqs 165 out of 183
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 14:07:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03469 XH: XH domain; Inter 100.0 1E-64 2.2E-69 468.5 13.6 131 501-631 1-132 (132)
2 PF03468 XS: XS domain; Inter 100.0 1.4E-45 2.9E-50 336.2 4.3 114 113-227 1-116 (116)
3 PF03470 zf-XS: XS zinc finger 99.7 6.4E-19 1.4E-23 134.5 2.8 43 42-84 1-43 (43)
4 PF07888 CALCOCO1: Calcium bin 97.0 0.3 6.5E-06 56.0 25.2 34 395-428 263-296 (546)
5 PF07888 CALCOCO1: Calcium bin 96.9 1.3 2.8E-05 51.0 29.8 69 231-299 149-217 (546)
6 TIGR02169 SMC_prok_A chromosom 96.8 1.9 4E-05 52.4 31.8 7 141-147 118-124 (1164)
7 KOG0996 Structural maintenance 96.4 2.8 6.1E-05 51.7 29.1 152 251-409 375-532 (1293)
8 TIGR02169 SMC_prok_A chromosom 96.4 3.7 8.1E-05 49.9 32.4 6 558-563 604-609 (1164)
9 KOG0161 Myosin class II heavy 96.4 2.1 4.6E-05 55.7 29.2 222 210-431 782-1036(1930)
10 COG1196 Smc Chromosome segrega 96.4 4.5 9.7E-05 50.5 31.7 153 437-591 443-632 (1163)
11 KOG4643 Uncharacterized coiled 96.3 2.2 4.9E-05 51.8 26.9 172 240-411 279-501 (1195)
12 KOG0161 Myosin class II heavy 96.2 5.7 0.00012 51.9 31.9 48 411-462 1037-1084(1930)
13 PF10174 Cast: RIM-binding pro 96.1 2.3 4.9E-05 51.1 25.9 218 255-483 401-635 (775)
14 KOG0579 Ste20-like serine/thre 95.9 3.9 8.4E-05 48.3 25.3 222 229-467 789-1022(1187)
15 COG1196 Smc Chromosome segrega 95.6 9.1 0.0002 47.9 31.4 12 83-94 40-51 (1163)
16 PRK11637 AmiB activator; Provi 95.5 3.1 6.7E-05 46.1 22.9 44 314-357 170-213 (428)
17 PF15066 CAGE1: Cancer-associa 95.3 1.3 2.7E-05 50.0 18.4 64 332-395 443-508 (527)
18 PF12128 DUF3584: Protein of u 95.3 12 0.00026 47.1 29.5 226 253-484 281-520 (1201)
19 PRK11637 AmiB activator; Provi 95.2 6.4 0.00014 43.7 28.1 48 382-429 168-215 (428)
20 KOG0250 DNA repair protein RAD 95.1 12 0.00026 46.3 27.2 53 436-488 867-921 (1074)
21 KOG0996 Structural maintenance 95.1 13 0.00028 46.4 29.5 65 250-314 303-367 (1293)
22 PF15619 Lebercilin: Ciliary p 94.9 4.8 0.0001 40.7 22.1 136 288-472 57-193 (194)
23 KOG0612 Rho-associated, coiled 94.8 16 0.00034 45.8 28.2 189 272-466 492-693 (1317)
24 KOG0976 Rho/Rac1-interacting s 94.8 13 0.00028 44.8 27.7 131 316-457 258-399 (1265)
25 TIGR02168 SMC_prok_B chromosom 94.2 18 0.00038 44.0 32.3 18 584-601 634-651 (1179)
26 PF09726 Macoilin: Transmembra 94.1 8.5 0.00018 45.9 22.7 43 259-301 459-501 (697)
27 COG1382 GimC Prefoldin, chaper 94.1 1 2.2E-05 42.4 12.2 93 394-491 9-114 (119)
28 KOG0250 DNA repair protein RAD 94.1 21 0.00045 44.3 29.9 67 249-315 224-304 (1074)
29 KOG0994 Extracellular matrix g 93.7 25 0.00055 44.0 25.6 61 226-286 1479-1544(1758)
30 PF08317 Spc7: Spc7 kinetochor 93.6 5.3 0.00012 42.9 18.4 41 390-430 250-291 (325)
31 KOG0971 Microtubule-associated 93.3 26 0.00056 42.9 25.9 24 445-468 463-486 (1243)
32 KOG0964 Structural maintenance 93.2 16 0.00036 44.8 22.7 21 581-602 561-581 (1200)
33 PHA02562 46 endonuclease subun 93.2 18 0.00039 40.9 27.0 35 390-424 312-346 (562)
34 PRK02224 chromosome segregatio 93.2 24 0.00053 42.4 27.9 13 395-407 346-358 (880)
35 PRK09039 hypothetical protein; 92.5 17 0.00038 39.6 20.3 28 474-501 189-216 (343)
36 KOG0982 Centrosomal protein Nu 92.3 23 0.0005 40.0 21.2 174 239-418 204-394 (502)
37 TIGR00606 rad50 rad50. This fa 92.3 42 0.0009 42.8 30.5 9 530-538 1145-1153(1311)
38 KOG4674 Uncharacterized conser 92.2 49 0.0011 43.5 29.9 169 252-424 1242-1424(1822)
39 TIGR00606 rad50 rad50. This fa 92.0 45 0.00097 42.5 26.7 58 396-457 869-926 (1311)
40 KOG0933 Structural maintenance 91.9 40 0.00087 41.8 24.4 107 251-357 242-348 (1174)
41 KOG0933 Structural maintenance 91.8 41 0.00089 41.7 24.4 47 396-446 887-933 (1174)
42 KOG0239 Kinesin (KAR3 subfamil 91.7 11 0.00025 44.6 19.0 204 251-501 112-319 (670)
43 KOG4674 Uncharacterized conser 91.4 60 0.0013 42.7 27.5 73 392-474 1308-1380(1822)
44 KOG1853 LIS1-interacting prote 91.2 23 0.0005 37.6 20.3 158 292-485 20-181 (333)
45 KOG1029 Endocytic adaptor prot 90.9 45 0.00097 40.4 28.3 21 437-457 546-566 (1118)
46 KOG0612 Rho-associated, coiled 89.2 74 0.0016 40.3 25.8 52 558-610 965-1022(1317)
47 COG1340 Uncharacterized archae 88.7 39 0.00084 36.5 21.3 59 394-456 134-195 (294)
48 PF05701 WEMBL: Weak chloropla 87.7 59 0.0013 37.5 31.3 95 250-345 169-263 (522)
49 KOG1937 Uncharacterized conser 87.1 22 0.00048 40.4 15.7 89 398-493 307-396 (521)
50 PF05701 WEMBL: Weak chloropla 86.9 65 0.0014 37.1 29.9 40 389-428 216-262 (522)
51 PRK04863 mukB cell division pr 86.8 1.1E+02 0.0025 39.8 34.3 29 433-461 435-463 (1486)
52 PF05483 SCP-1: Synaptonemal c 86.6 80 0.0017 37.8 26.8 136 274-409 485-633 (786)
53 PF05605 zf-Di19: Drought indu 86.3 0.39 8.3E-06 38.4 1.4 23 38-64 1-23 (54)
54 KOG4572 Predicted DNA-binding 86.1 72 0.0016 38.9 19.7 100 258-357 920-1042(1424)
55 KOG0980 Actin-binding protein 84.8 1.1E+02 0.0023 37.7 25.9 37 504-545 615-651 (980)
56 PF15272 BBP1_C: Spindle pole 84.5 51 0.0011 33.7 18.3 134 246-408 12-149 (196)
57 KOG0978 E3 ubiquitin ligase in 83.8 1.1E+02 0.0023 36.9 26.5 100 326-432 515-625 (698)
58 PRK04778 septation ring format 83.1 99 0.0021 35.9 28.7 105 380-484 313-427 (569)
59 PF00076 RRM_1: RNA recognitio 83.1 2.8 6.1E-05 33.0 5.1 54 123-185 1-57 (70)
60 PF09726 Macoilin: Transmembra 83.0 1.1E+02 0.0023 37.0 19.9 16 394-409 548-563 (697)
61 PF05667 DUF812: Protein of un 82.0 1.2E+02 0.0025 36.0 22.6 34 382-425 496-529 (594)
62 PF15070 GOLGA2L5: Putative go 82.0 1.2E+02 0.0026 36.1 23.2 34 245-278 28-61 (617)
63 PF13851 GAS: Growth-arrest sp 81.4 29 0.00062 35.2 12.7 87 249-335 82-168 (201)
64 PRK03918 chromosome segregatio 81.2 1.3E+02 0.0029 36.1 30.8 7 85-91 41-47 (880)
65 PF05010 TACC: Transforming ac 80.8 72 0.0016 32.8 19.5 129 238-370 51-182 (207)
66 KOG0249 LAR-interacting protei 80.8 1.2E+02 0.0025 36.7 18.6 115 215-335 62-181 (916)
67 PF00261 Tropomyosin: Tropomyo 80.6 73 0.0016 32.8 23.0 36 252-287 35-70 (237)
68 PF10174 Cast: RIM-binding pro 80.5 1.5E+02 0.0032 36.2 26.5 213 236-460 319-534 (775)
69 KOG0977 Nuclear envelope prote 79.9 1.3E+02 0.0028 35.2 19.8 134 280-427 203-336 (546)
70 KOG1103 Predicted coiled-coil 79.5 1.1E+02 0.0024 34.1 18.3 53 304-356 101-153 (561)
71 PRK00409 recombination and DNA 78.3 43 0.00093 40.5 14.9 79 312-403 518-596 (782)
72 KOG1853 LIS1-interacting prote 78.0 1E+02 0.0022 33.0 19.3 40 383-422 132-171 (333)
73 KOG0018 Structural maintenance 77.8 2E+02 0.0044 36.2 24.7 116 211-336 629-754 (1141)
74 smart00787 Spc7 Spc7 kinetocho 77.7 1.1E+02 0.0024 33.2 18.8 22 410-431 248-269 (312)
75 KOG0971 Microtubule-associated 77.3 2E+02 0.0043 35.9 27.0 202 339-559 386-619 (1243)
76 KOG0239 Kinesin (KAR3 subfamil 77.3 98 0.0021 37.1 17.1 26 405-430 297-322 (670)
77 PF10186 Atg14: UV radiation r 77.3 92 0.002 32.0 16.4 19 528-546 204-222 (302)
78 KOG0962 DNA repair protein RAD 76.6 2.4E+02 0.0051 36.4 25.3 73 350-429 827-899 (1294)
79 PF14259 RRM_6: RNA recognitio 76.6 5.8 0.00013 31.9 5.0 57 123-188 1-60 (70)
80 KOG0995 Centromere-associated 76.1 1.7E+02 0.0037 34.5 28.7 51 226-279 204-254 (581)
81 COG1579 Zn-ribbon protein, pos 75.7 1.1E+02 0.0024 32.2 20.6 73 344-423 84-157 (239)
82 PF05911 DUF869: Plant protein 74.9 2.1E+02 0.0045 35.0 28.9 91 249-349 20-110 (769)
83 PF00038 Filament: Intermediat 74.1 1.2E+02 0.0026 31.9 21.9 64 389-459 214-281 (312)
84 PF08702 Fib_alpha: Fibrinogen 74.0 51 0.0011 32.0 11.5 41 270-310 74-115 (146)
85 PRK04863 mukB cell division pr 73.2 3.1E+02 0.0066 36.1 27.3 26 437-462 446-471 (1486)
86 PTZ00121 MAEBL; Provisional 72.7 3.1E+02 0.0068 36.0 25.6 72 285-360 1570-1641(2084)
87 TIGR01069 mutS2 MutS2 family p 71.5 71 0.0015 38.7 14.3 43 313-355 514-556 (771)
88 KOG0964 Structural maintenance 70.5 2.9E+02 0.0063 34.8 25.0 117 213-345 631-755 (1200)
89 smart00362 RRM_2 RNA recogniti 70.5 9.6 0.00021 29.0 4.7 46 123-176 2-49 (72)
90 KOG0946 ER-Golgi vesicle-tethe 70.1 2.7E+02 0.0059 34.3 23.4 49 226-274 630-678 (970)
91 PF05010 TACC: Transforming ac 69.8 1.4E+02 0.003 30.8 25.6 84 251-334 7-93 (207)
92 PF12128 DUF3584: Protein of u 69.2 3.3E+02 0.0071 34.8 34.7 44 552-595 893-936 (1201)
93 PF05769 DUF837: Protein of un 68.5 1.4E+02 0.0029 30.1 18.5 39 296-334 45-94 (181)
94 KOG0979 Structural maintenance 67.9 3.3E+02 0.0071 34.3 26.6 93 173-291 119-212 (1072)
95 PF00261 Tropomyosin: Tropomyo 66.5 1.6E+02 0.0035 30.3 21.6 46 437-482 173-218 (237)
96 PHA02562 46 endonuclease subun 66.4 2.3E+02 0.0051 32.1 28.6 26 245-270 173-198 (562)
97 COG0419 SbcC ATPase involved i 65.9 3.3E+02 0.007 33.5 29.1 32 400-431 680-712 (908)
98 KOG0995 Centromere-associated 65.6 2.8E+02 0.0061 32.7 27.8 93 253-345 266-367 (581)
99 PRK12704 phosphodiesterase; Pr 65.2 2.7E+02 0.0058 32.4 23.0 55 370-424 147-205 (520)
100 KOG4807 F-actin binding protei 64.7 2.5E+02 0.0055 31.9 20.0 79 390-482 462-540 (593)
101 KOG2412 Nuclear-export-signal 64.5 2.4E+02 0.0051 33.2 15.7 47 311-359 198-246 (591)
102 TIGR01069 mutS2 MutS2 family p 64.5 1.7E+02 0.0038 35.5 15.6 56 305-360 499-554 (771)
103 PRK04778 septation ring format 62.7 3E+02 0.0065 32.1 25.4 22 280-301 281-302 (569)
104 PF04880 NUDE_C: NUDE protein, 62.2 12 0.00026 37.2 4.7 28 395-422 11-38 (166)
105 KOG1029 Endocytic adaptor prot 62.1 3.8E+02 0.0083 33.1 23.5 14 412-425 448-461 (1118)
106 PF07106 TBPIP: Tat binding pr 62.0 53 0.0011 31.9 9.0 78 395-483 76-153 (169)
107 PRK00106 hypothetical protein; 61.9 3.2E+02 0.0069 32.1 22.7 54 370-423 162-219 (535)
108 PLN03229 acetyl-coenzyme A car 61.8 3.7E+02 0.0081 32.8 21.3 59 397-455 648-710 (762)
109 PF10234 Cluap1: Clusterin-ass 61.6 1.6E+02 0.0034 31.6 13.0 120 232-360 114-236 (267)
110 KOG1937 Uncharacterized conser 61.1 3.1E+02 0.0067 31.7 19.4 48 310-357 359-411 (521)
111 TIGR03319 YmdA_YtgF conserved 61.0 3.2E+02 0.0069 31.8 22.8 55 370-424 141-199 (514)
112 PRK03918 chromosome segregatio 60.6 3.7E+02 0.008 32.4 32.0 6 515-520 441-446 (880)
113 PF04012 PspA_IM30: PspA/IM30 60.5 1.9E+02 0.0041 29.0 23.7 161 290-463 24-188 (221)
114 KOG0804 Cytoplasmic Zn-finger 60.5 3.2E+02 0.0068 31.6 16.3 20 324-343 347-366 (493)
115 KOG4673 Transcription factor T 60.2 3.9E+02 0.0084 32.5 26.2 31 243-273 343-373 (961)
116 PRK00409 recombination and DNA 59.9 2E+02 0.0043 35.1 15.1 71 245-319 512-582 (782)
117 PF03962 Mnd1: Mnd1 family; I 59.8 2E+02 0.0043 29.0 13.0 69 397-468 68-138 (188)
118 PF05622 HOOK: HOOK protein; 58.8 3.2 6.9E-05 49.1 0.0 70 393-465 532-601 (713)
119 PF10481 CENP-F_N: Cenp-F N-te 58.6 2E+02 0.0042 31.2 12.9 100 354-460 30-129 (307)
120 PF05557 MAD: Mitotic checkpoi 57.9 3.4 7.3E-05 49.0 0.0 93 391-483 288-393 (722)
121 PF05262 Borrelia_P83: Borreli 57.8 3.6E+02 0.0078 31.4 16.5 21 185-205 108-128 (489)
122 PF09731 Mitofilin: Mitochondr 57.6 3.5E+02 0.0077 31.2 21.8 23 392-414 379-401 (582)
123 COG1842 PspA Phage shock prote 56.9 2.5E+02 0.0054 29.2 18.6 43 287-329 22-64 (225)
124 PF10168 Nup88: Nuclear pore c 56.5 4.4E+02 0.0095 32.0 17.8 68 267-334 551-624 (717)
125 KOG0163 Myosin class VI heavy 56.4 4.7E+02 0.01 32.3 19.9 10 210-219 822-831 (1259)
126 PRK09039 hypothetical protein; 56.3 3.1E+02 0.0066 30.1 17.9 48 251-298 58-105 (343)
127 cd07651 F-BAR_PombeCdc15_like 55.9 2.4E+02 0.0052 28.8 18.7 102 311-425 108-214 (236)
128 smart00030 CLb CLUSTERIN Beta 55.6 52 0.0011 33.8 7.9 36 378-413 44-79 (206)
129 KOG1854 Mitochondrial inner me 55.6 4.4E+02 0.0095 31.7 20.2 118 243-360 155-297 (657)
130 KOG4643 Uncharacterized coiled 55.4 5.4E+02 0.012 32.7 28.9 36 208-243 284-319 (1195)
131 TIGR01661 ELAV_HUD_SF ELAV/HuD 55.2 20 0.00043 37.8 5.2 51 122-180 271-325 (352)
132 PF04012 PspA_IM30: PspA/IM30 54.8 2.4E+02 0.0051 28.4 16.8 48 313-360 15-62 (221)
133 PRK09343 prefoldin subunit bet 54.4 1.9E+02 0.0041 27.1 12.1 80 407-491 27-115 (121)
134 PF10168 Nup88: Nuclear pore c 54.4 4.8E+02 0.01 31.7 17.8 27 329-355 637-663 (717)
135 PF06637 PV-1: PV-1 protein (P 53.9 3.7E+02 0.008 30.5 14.5 109 249-357 281-389 (442)
136 PRK12704 phosphodiesterase; Pr 53.7 4.2E+02 0.009 30.9 20.7 34 538-577 273-306 (520)
137 PF10498 IFT57: Intra-flagella 53.4 3.6E+02 0.0077 30.0 16.0 42 43-92 16-57 (359)
138 KOG0976 Rho/Rac1-interacting s 53.3 5.4E+02 0.012 32.0 24.5 16 187-202 47-62 (1265)
139 PF13894 zf-C2H2_4: C2H2-type 52.3 8.8 0.00019 24.3 1.3 20 40-62 1-20 (24)
140 PF15236 CCDC66: Coiled-coil d 51.5 2.6E+02 0.0056 27.8 15.5 97 214-310 15-116 (157)
141 COG2433 Uncharacterized conser 51.0 1.8E+02 0.0039 34.6 12.2 37 391-430 474-510 (652)
142 PLN03120 nucleic acid binding 51.0 24 0.00052 37.4 4.9 59 122-189 6-65 (260)
143 PF15070 GOLGA2L5: Putative go 50.9 5E+02 0.011 31.0 23.8 26 282-307 5-30 (617)
144 PF15254 CCDC14: Coiled-coil d 49.8 4.8E+02 0.01 32.1 15.5 94 376-488 454-548 (861)
145 PF15619 Lebercilin: Ciliary p 49.5 3E+02 0.0065 28.0 16.2 23 254-276 62-84 (194)
146 COG1842 PspA Phage shock prote 48.9 3.3E+02 0.0072 28.3 22.2 47 254-300 18-64 (225)
147 PLN03121 nucleic acid binding 48.5 29 0.00063 36.5 5.0 61 120-189 5-66 (243)
148 COG2433 Uncharacterized conser 47.9 2.2E+02 0.0047 34.0 12.1 61 381-459 440-500 (652)
149 COG4942 Membrane-bound metallo 47.7 4.8E+02 0.01 29.8 21.8 39 413-455 215-253 (420)
150 PF12325 TMF_TATA_bd: TATA ele 47.7 1.9E+02 0.0042 27.3 9.9 45 412-467 72-116 (120)
151 COG0419 SbcC ATPase involved i 47.5 6.3E+02 0.014 31.1 30.7 36 387-422 420-455 (908)
152 KOG0579 Ste20-like serine/thre 47.4 6.2E+02 0.014 31.1 19.9 49 297-345 803-851 (1187)
153 PF04111 APG6: Autophagy prote 47.3 3.1E+02 0.0067 29.8 12.7 53 495-553 150-202 (314)
154 KOG0977 Nuclear envelope prote 47.2 5.5E+02 0.012 30.3 27.5 52 390-441 175-230 (546)
155 PF13863 DUF4200: Domain of un 46.9 2.3E+02 0.0049 25.8 14.4 27 403-429 69-95 (126)
156 KOG0247 Kinesin-like protein [ 45.3 6.7E+02 0.014 30.8 16.0 66 390-461 580-647 (809)
157 PTZ00464 SNF-7-like protein; P 45.2 3.7E+02 0.0079 27.8 14.8 28 326-353 16-43 (211)
158 PRK12705 hypothetical protein; 45.1 5.7E+02 0.012 29.9 20.9 72 326-399 93-165 (508)
159 PF11068 YlqD: YlqD protein; 45.0 95 0.0021 29.8 7.5 86 320-428 19-104 (131)
160 KOG2129 Uncharacterized conser 44.5 5.2E+02 0.011 29.7 13.9 68 261-328 188-271 (552)
161 PRK00106 hypothetical protein; 44.5 5.9E+02 0.013 29.9 18.2 9 333-341 113-121 (535)
162 PF08317 Spc7: Spc7 kinetochor 43.9 4.5E+02 0.0097 28.4 22.0 34 324-357 131-164 (325)
163 PF08702 Fib_alpha: Fibrinogen 42.3 3.3E+02 0.0072 26.4 14.8 65 241-305 24-91 (146)
164 PF11559 ADIP: Afadin- and alp 42.3 3.1E+02 0.0067 26.0 14.0 99 296-425 52-150 (151)
165 PF00769 ERM: Ezrin/radixin/mo 42.2 4.3E+02 0.0093 27.7 16.5 66 294-359 14-85 (246)
166 PF09727 CortBP2: Cortactin-bi 41.2 3.4E+02 0.0074 27.8 11.1 54 304-357 96-149 (192)
167 KOG1265 Phospholipase C [Lipid 40.7 8.6E+02 0.019 30.7 18.6 23 24-46 791-819 (1189)
168 TIGR02894 DNA_bind_RsfA transc 40.1 4E+02 0.0086 26.7 11.8 57 410-484 99-155 (161)
169 PRK06569 F0F1 ATP synthase sub 40.0 3.8E+02 0.0083 26.5 14.8 44 342-398 88-131 (155)
170 PRK10884 SH3 domain-containing 39.4 3.5E+02 0.0076 27.8 11.1 23 312-334 134-156 (206)
171 KOG0946 ER-Golgi vesicle-tethe 38.7 8.7E+02 0.019 30.3 21.4 44 437-480 796-839 (970)
172 PF07111 HCR: Alpha helical co 38.4 8.2E+02 0.018 29.9 21.9 163 258-466 61-223 (739)
173 PF00096 zf-C2H2: Zinc finger, 38.3 16 0.00035 23.6 0.9 20 40-62 1-20 (23)
174 PF05622 HOOK: HOOK protein; 38.3 11 0.00023 44.9 0.0 105 318-427 292-403 (713)
175 KOG1103 Predicted coiled-coil 38.2 6.3E+02 0.014 28.5 19.1 56 368-426 198-263 (561)
176 COG5185 HEC1 Protein involved 37.7 7.3E+02 0.016 29.1 25.9 142 241-401 252-413 (622)
177 PF09787 Golgin_A5: Golgin sub 37.1 7.1E+02 0.015 28.7 23.8 17 576-592 468-484 (511)
178 PF07989 Microtub_assoc: Micro 37.1 70 0.0015 27.8 4.8 42 304-345 30-71 (75)
179 PLN03134 glycine-rich RNA-bind 37.0 66 0.0014 30.7 5.2 55 122-185 36-94 (144)
180 KOG0963 Transcription factor/C 37.0 8.1E+02 0.018 29.4 26.1 39 390-431 309-360 (629)
181 KOG4572 Predicted DNA-binding 36.8 9.5E+02 0.021 30.1 21.7 28 402-429 1017-1045(1424)
182 PF04508 Pox_A_type_inc: Viral 36.6 34 0.00074 23.7 2.2 19 391-409 1-19 (23)
183 PF04065 Not3: Not1 N-terminal 36.1 5.4E+02 0.012 27.1 16.2 142 258-424 6-152 (233)
184 PF04880 NUDE_C: NUDE protein, 35.5 43 0.00093 33.4 3.7 11 269-279 2-12 (166)
185 COG1579 Zn-ribbon protein, pos 35.2 5.7E+02 0.012 27.1 19.4 13 530-542 175-187 (239)
186 TIGR01005 eps_transp_fam exopo 35.1 7.1E+02 0.015 29.8 14.4 59 253-311 288-346 (754)
187 COG3883 Uncharacterized protei 35.0 6E+02 0.013 27.3 19.1 55 253-307 52-113 (265)
188 PTZ00332 paraflagellar rod pro 35.0 8.1E+02 0.018 28.8 24.0 113 283-431 262-393 (589)
189 PF09744 Jnk-SapK_ap_N: JNK_SA 35.0 4.6E+02 0.01 25.9 16.8 132 255-407 24-155 (158)
190 PF14662 CCDC155: Coiled-coil 34.9 5.2E+02 0.011 26.6 22.6 64 300-364 51-117 (193)
191 PF10458 Val_tRNA-synt_C: Valy 34.8 2E+02 0.0043 24.0 7.1 54 397-453 3-59 (66)
192 PRK10803 tol-pal system protei 34.5 1E+02 0.0023 32.4 6.6 44 400-457 56-99 (263)
193 PF14988 DUF4515: Domain of un 34.5 5.2E+02 0.011 26.5 24.5 58 252-309 21-78 (206)
194 PF05483 SCP-1: Synaptonemal c 34.2 9.5E+02 0.021 29.4 30.2 35 252-286 239-273 (786)
195 KOG4360 Uncharacterized coiled 34.2 8.5E+02 0.018 28.8 15.4 29 401-429 236-268 (596)
196 PLN03188 kinesin-12 family pro 34.2 1.2E+03 0.026 30.5 17.3 46 251-296 1077-1122(1320)
197 PF14354 Lar_restr_allev: Rest 34.2 18 0.00039 29.2 0.7 11 39-50 3-13 (61)
198 PLN02678 seryl-tRNA synthetase 34.1 2.8E+02 0.006 31.8 10.3 55 433-505 71-133 (448)
199 PF04810 zf-Sec23_Sec24: Sec23 34.1 28 0.00061 26.4 1.8 15 33-47 17-32 (40)
200 PF01576 Myosin_tail_1: Myosin 34.0 14 0.00029 45.1 0.0 78 280-357 104-188 (859)
201 PRK01156 chromosome segregatio 34.0 9.5E+02 0.021 29.3 31.8 14 326-339 261-274 (895)
202 PRK00398 rpoP DNA-directed RNA 33.9 29 0.00063 26.9 1.8 17 32-48 13-30 (46)
203 PF08826 DMPK_coil: DMPK coile 33.9 1.3E+02 0.0029 25.3 5.8 53 402-459 5-58 (61)
204 PF05667 DUF812: Protein of un 33.8 8.8E+02 0.019 28.9 27.6 214 250-484 325-556 (594)
205 PRK13182 racA polar chromosome 33.8 2.3E+02 0.0049 28.4 8.5 34 376-409 110-143 (175)
206 PRK14143 heat shock protein Gr 33.7 4E+02 0.0087 28.1 10.6 26 478-511 152-177 (238)
207 PTZ00491 major vault protein; 33.7 6.6E+02 0.014 31.3 13.6 28 260-287 626-653 (850)
208 KOG2264 Exostosin EXT1L [Signa 33.6 2.8E+02 0.006 33.0 10.0 46 381-429 76-121 (907)
209 PRK01156 chromosome segregatio 33.5 9.7E+02 0.021 29.2 31.6 35 251-285 467-501 (895)
210 PRK10698 phage shock protein P 33.1 5.6E+02 0.012 26.4 23.1 49 289-337 24-72 (222)
211 PF11932 DUF3450: Protein of u 33.0 5.7E+02 0.012 26.4 12.5 55 409-467 50-104 (251)
212 COG0466 Lon ATP-dependent Lon 32.8 1E+03 0.022 29.3 15.1 85 400-484 207-321 (782)
213 PHA02540 61 DNA primase; Provi 32.5 27 0.0006 38.3 2.0 63 33-95 19-91 (337)
214 TIGR01649 hnRNP-L_PTB hnRNP-L/ 32.4 71 0.0015 36.1 5.3 69 117-194 389-463 (481)
215 PF09738 DUF2051: Double stran 32.4 6.9E+02 0.015 27.2 15.9 28 266-293 83-110 (302)
216 KOG2996 Rho guanine nucleotide 31.8 9.3E+02 0.02 29.0 13.8 162 269-467 205-401 (865)
217 PF03670 UPF0184: Uncharacteri 31.0 1.7E+02 0.0036 26.3 6.2 49 254-302 27-75 (83)
218 smart00360 RRM RNA recognition 30.9 72 0.0016 23.9 3.7 45 139-184 7-55 (71)
219 PF10473 CENP-F_leu_zip: Leuci 30.8 5.1E+02 0.011 25.2 18.2 130 274-408 3-136 (140)
220 PF06637 PV-1: PV-1 protein (P 30.7 8.5E+02 0.018 27.7 14.4 25 399-426 357-381 (442)
221 smart00400 ZnF_CHCC zinc finge 30.7 62 0.0013 25.8 3.3 35 27-65 10-45 (55)
222 KOG0533 RRM motif-containing p 30.5 67 0.0014 33.9 4.3 66 121-195 84-152 (243)
223 PF07926 TPR_MLP1_2: TPR/MLP1/ 30.0 4.7E+02 0.01 24.5 15.7 43 317-359 66-108 (132)
224 TIGR01843 type_I_hlyD type I s 30.0 7.2E+02 0.016 26.7 15.2 11 616-626 404-414 (423)
225 COG4026 Uncharacterized protei 29.8 3.1E+02 0.0068 29.0 8.8 64 386-449 144-207 (290)
226 COG1340 Uncharacterized archae 29.8 7.7E+02 0.017 27.0 28.8 101 385-489 166-275 (294)
227 KOG0963 Transcription factor/C 29.7 1.1E+03 0.023 28.5 24.6 48 435-491 312-359 (629)
228 PF11608 Limkain-b1: Limkain b 29.7 45 0.00098 30.2 2.5 46 122-176 4-49 (90)
229 smart00531 TFIIE Transcription 29.5 28 0.0006 33.3 1.3 13 36-48 120-132 (147)
230 TIGR03655 anti_R_Lar restricti 29.3 24 0.00052 28.2 0.7 10 41-50 3-12 (53)
231 PF12344 UvrB: Ultra-violet re 29.1 68 0.0015 25.5 3.1 24 277-300 4-30 (44)
232 COG0576 GrpE Molecular chapero 29.0 3.3E+02 0.0072 27.6 8.9 55 456-517 93-156 (193)
233 PF14817 HAUS5: HAUS augmin-li 28.4 6.2E+02 0.014 30.4 12.2 78 244-321 77-160 (632)
234 KOG0962 DNA repair protein RAD 28.0 1.5E+03 0.032 29.7 24.9 64 261-324 886-952 (1294)
235 KOG0993 Rab5 GTPase effector R 28.0 9.8E+02 0.021 27.6 15.3 92 214-307 19-115 (542)
236 PF04094 DUF390: Protein of un 27.9 1.2E+03 0.026 28.7 17.3 111 237-348 412-529 (828)
237 PRK10884 SH3 domain-containing 27.9 6.8E+02 0.015 25.7 12.1 17 199-217 66-82 (206)
238 COG0172 SerS Seryl-tRNA synthe 27.8 4.3E+02 0.0094 30.2 10.3 55 435-507 70-132 (429)
239 COG4985 ABC-type phosphate tra 27.7 3.7E+02 0.0079 28.7 8.9 15 208-222 140-154 (289)
240 KOG0804 Cytoplasmic Zn-finger 27.5 1E+03 0.022 27.7 16.4 22 410-431 430-452 (493)
241 KOG4403 Cell surface glycoprot 27.5 1E+03 0.022 27.6 13.1 45 439-483 308-369 (575)
242 TIGR00219 mreC rod shape-deter 27.5 1.3E+02 0.0029 32.0 6.0 43 388-430 70-113 (283)
243 KOG2072 Translation initiation 27.4 1.3E+03 0.028 28.9 21.7 27 382-408 668-694 (988)
244 PF05129 Elf1: Transcription e 27.3 25 0.00054 30.9 0.5 11 36-46 19-29 (81)
245 PF09787 Golgin_A5: Golgin sub 27.2 1E+03 0.022 27.5 26.1 55 413-469 367-421 (511)
246 PF03804 DUF325: Viral domain 26.9 39 0.00084 29.0 1.5 23 495-517 33-55 (71)
247 PF05266 DUF724: Protein of un 26.9 6.5E+02 0.014 25.5 10.5 15 414-428 137-151 (190)
248 TIGR03185 DNA_S_dndD DNA sulfu 26.8 1.1E+03 0.024 27.8 28.2 15 150-164 141-155 (650)
249 PF10058 DUF2296: Predicted in 26.8 34 0.00073 28.0 1.2 18 29-46 32-51 (54)
250 KOG4593 Mitotic checkpoint pro 26.7 1.2E+03 0.027 28.4 23.0 188 244-465 156-344 (716)
251 KOG0018 Structural maintenance 26.3 1.5E+03 0.032 29.1 25.6 73 409-485 403-475 (1141)
252 PF10805 DUF2730: Protein of u 25.9 2.8E+02 0.0061 25.4 7.1 42 427-468 58-100 (106)
253 KOG0244 Kinesin-like protein [ 25.7 1.4E+03 0.031 28.7 14.8 79 405-484 576-662 (913)
254 TIGR01661 ELAV_HUD_SF ELAV/HuD 25.7 1.1E+02 0.0024 32.2 5.1 47 122-176 5-55 (352)
255 PF13912 zf-C2H2_6: C2H2-type 25.0 35 0.00076 22.9 0.8 22 39-63 1-22 (27)
256 KOG2606 OTU (ovarian tumor)-li 25.0 2.8E+02 0.006 30.3 7.7 30 391-420 45-74 (302)
257 PF06705 SF-assemblin: SF-asse 24.9 7.8E+02 0.017 25.4 24.4 26 414-439 174-199 (247)
258 PF13909 zf-H2C2_5: C2H2-type 24.9 36 0.00078 22.4 0.8 19 40-62 1-19 (24)
259 PF12711 Kinesin-relat_1: Kine 24.4 5.3E+02 0.011 23.3 9.0 56 267-326 3-60 (86)
260 PF00038 Filament: Intermediat 24.4 8.4E+02 0.018 25.6 26.3 168 290-486 45-220 (312)
261 COG0724 RNA-binding proteins ( 24.3 1.3E+02 0.0029 28.6 4.9 60 120-187 115-178 (306)
262 PRK05431 seryl-tRNA synthetase 24.2 6.3E+02 0.014 28.5 10.9 55 434-506 67-129 (425)
263 PF07899 Frigida: Frigida-like 24.1 1.9E+02 0.0042 31.0 6.6 44 366-409 234-281 (290)
264 PF15358 TSKS: Testis-specific 23.8 4.2E+02 0.0091 30.4 9.1 54 236-289 108-161 (558)
265 PF11932 DUF3450: Protein of u 23.8 8.2E+02 0.018 25.2 13.0 12 400-411 86-97 (251)
266 PF10046 BLOC1_2: Biogenesis o 23.7 5.4E+02 0.012 23.1 12.8 89 252-342 6-94 (99)
267 cd07647 F-BAR_PSTPIP The F-BAR 23.5 8.1E+02 0.018 25.1 17.2 116 306-427 102-219 (239)
268 KOG0577 Serine/threonine prote 23.3 1.4E+03 0.031 27.9 25.9 69 235-303 464-538 (948)
269 PRK10698 phage shock protein P 23.1 8.4E+02 0.018 25.1 16.8 47 252-298 16-62 (222)
270 PF10481 CENP-F_N: Cenp-F N-te 23.1 1E+03 0.022 26.1 15.8 104 322-436 23-137 (307)
271 cd00590 RRM RRM (RNA recogniti 23.0 1.9E+02 0.004 21.8 4.7 44 140-184 11-57 (74)
272 PF00301 Rubredoxin: Rubredoxi 22.9 35 0.00075 27.2 0.5 13 38-50 33-45 (47)
273 PF13893 RRM_5: RNA recognitio 22.8 1.1E+02 0.0025 23.6 3.5 29 145-175 1-30 (56)
274 KOG4360 Uncharacterized coiled 22.8 1.3E+03 0.029 27.3 14.4 104 251-354 196-301 (596)
275 TIGR03185 DNA_S_dndD DNA sulfu 22.7 1.3E+03 0.028 27.3 28.9 19 407-425 397-415 (650)
276 PF10805 DUF2730: Protein of u 22.7 2E+02 0.0044 26.3 5.5 34 396-429 47-86 (106)
277 smart00787 Spc7 Spc7 kinetocho 22.4 1E+03 0.022 25.9 21.7 39 439-484 224-262 (312)
278 PF13870 DUF4201: Domain of un 22.4 7.3E+02 0.016 24.2 16.2 26 296-321 60-85 (177)
279 PHA00616 hypothetical protein 22.2 28 0.00061 27.6 -0.1 21 40-63 2-22 (44)
280 PF13913 zf-C2HC_2: zinc-finge 22.2 49 0.0011 22.8 1.1 20 39-62 2-21 (25)
281 PF07246 Phlebovirus_NSM: Phle 22.1 6.4E+02 0.014 27.1 9.7 41 134-176 67-112 (264)
282 KOG0163 Myosin class VI heavy 22.1 1.6E+03 0.035 28.1 18.4 19 310-328 896-914 (1259)
283 PF02994 Transposase_22: L1 tr 21.9 1.6E+02 0.0036 32.5 5.7 30 436-465 140-169 (370)
284 TIGR02231 conserved hypothetic 21.8 3.8E+02 0.0083 30.7 8.8 26 460-485 144-169 (525)
285 TIGR03545 conserved hypothetic 21.7 8.9E+02 0.019 28.5 11.7 32 409-440 238-269 (555)
286 KOG2903 Predicted glutathione 21.7 42 0.00091 36.0 1.0 23 585-607 110-132 (319)
287 PF01093 Clusterin: Clusterin; 21.5 3.2E+02 0.007 31.3 7.8 36 378-413 38-73 (436)
288 PRK10929 putative mechanosensi 21.4 1.8E+03 0.04 28.4 25.1 104 309-412 257-361 (1109)
289 PF01576 Myosin_tail_1: Myosin 21.2 32 0.00069 42.1 0.0 71 409-483 322-392 (859)
290 KOG3214 Uncharacterized Zn rib 21.0 40 0.00087 31.2 0.6 15 36-50 20-34 (109)
291 COG5019 CDC3 Septin family pro 20.8 4.7E+02 0.01 29.4 8.8 55 288-342 313-367 (373)
292 PF03114 BAR: BAR domain; Int 20.7 7.5E+02 0.016 23.7 17.7 62 283-344 97-158 (229)
293 cd04718 BAH_plant_2 BAH, or Br 20.6 43 0.00094 32.8 0.8 13 36-48 15-27 (148)
294 KOG4571 Activating transcripti 20.6 3.6E+02 0.0078 29.4 7.6 43 383-425 240-286 (294)
295 PF07464 ApoLp-III: Apolipopho 20.6 1.6E+02 0.0035 29.0 4.7 76 252-330 44-119 (155)
296 PF07246 Phlebovirus_NSM: Phle 20.5 5.1E+02 0.011 27.9 8.6 13 474-486 222-234 (264)
297 PF06428 Sec2p: GDP/GTP exchan 20.5 3.1E+02 0.0067 25.2 6.2 77 345-427 4-84 (100)
298 PF12760 Zn_Tnp_IS1595: Transp 20.4 36 0.00078 26.4 0.2 20 34-56 13-33 (46)
299 KOG4364 Chromatin assembly fac 20.3 1.4E+03 0.03 28.0 12.6 15 591-605 486-500 (811)
300 PF07889 DUF1664: Protein of u 20.3 7.7E+02 0.017 23.6 13.2 95 239-334 29-123 (126)
301 TIGR00414 serS seryl-tRNA synt 20.3 8.3E+02 0.018 27.5 10.8 53 436-506 72-132 (418)
302 PF03127 GAT: GAT domain; Int 20.2 4.4E+02 0.0096 23.4 7.1 25 406-430 2-26 (100)
303 PF14932 HAUS-augmin3: HAUS au 20.2 1E+03 0.022 24.9 12.0 41 474-515 134-178 (256)
304 PRK13729 conjugal transfer pil 20.1 3.2E+02 0.0069 31.7 7.4 18 439-456 103-120 (475)
305 COG5533 UBP5 Ubiquitin C-termi 20.1 61 0.0013 35.6 1.8 28 16-48 266-293 (415)
No 1
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT. The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
Probab=100.00 E-value=1e-64 Score=468.50 Aligned_cols=131 Identities=66% Similarity=1.175 Sum_probs=130.4
Q ss_pred cccCCCCChhhHHHHhhcCCchhHHHHHHHHhhHHHHhhcCCCCcceEEEEecCccccccCcccHHHHHHH-HhhHHHHH
Q 006762 501 KRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEGTPKEIIDEEDEKIKSLK-ELGDEIYM 579 (632)
Q Consensus 501 KrmGeld~kpf~~ac~~k~~~~~~~~~a~~lcs~Wq~~l~~p~WhPFk~v~v~g~~keii~edD~kL~~Lk-e~Geev~~ 579 (632)
||||+||.+||+.||++||++++|+++|++|||+||++|+||+|||||||+++|+.++|||+||+||+.|| +||+|||+
T Consensus 1 KrMGeLd~kpF~~Ack~k~~~eeae~~A~~LcS~Wqe~ikdp~WhPFkvv~~~g~~~evi~edDekL~~Lk~e~Geevy~ 80 (132)
T PF03469_consen 1 KRMGELDEKPFLNACKRKYPEEEAEVKAAELCSLWQEEIKDPEWHPFKVVTVDGKEKEVIDEDDEKLQELKEEWGEEVYN 80 (132)
T ss_pred CcccccChHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhhCCCccceEEeccCCcccccccCchHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhhhhcCCCCcccccccccccCccccHHHHHHHHHHHHHhhhccc
Q 006762 580 AVTTALKELNEYNPSGRYVIPDLWNFKEGRKATLKEVISYIVGNIRRLKRKR 631 (632)
Q Consensus 580 aV~~Al~E~neyN~sgry~v~elWN~ke~rkAtl~E~~~~~~~~~k~~k~kr 631 (632)
||++||+|||||||||||||||||||+|||||||+|||+||++||+++||||
T Consensus 81 aV~~Al~E~nEyN~sGry~v~eLWN~ke~RkAtl~E~v~~i~~q~k~~krkr 132 (132)
T PF03469_consen 81 AVTKALLEINEYNPSGRYPVPELWNFKEGRKATLKEVVQYILKQWKTLKRKR 132 (132)
T ss_pred HHHHHHHHHHHhccCCCCCCccCCccccccccCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999998
No 2
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=100.00 E-value=1.4e-45 Score=336.16 Aligned_cols=114 Identities=46% Similarity=0.845 Sum_probs=87.0
Q ss_pred CCceeeecceEEEEecccccc-CCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHHHHhhh
Q 006762 113 QEDLYVWPWMGIIVNIVMETK-DRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAF 190 (632)
Q Consensus 113 ~de~iVWPwmgII~Ni~te~~-dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~lek~F 190 (632)
+|++|||||||||+||+|+++ +|+++|+|++.|++ |+.|+|.+|+||||+.||+|+|||+|++||+||+||++||+||
T Consensus 1 qdd~~VWPwmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~~F 80 (116)
T PF03468_consen 1 QDDLIVWPWMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEKHF 80 (116)
T ss_dssp ---EEEES-EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHHHH
T ss_pred CCCcccCCCEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHHHHH
Confidence 589999999999999999996 89999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhcCCChhhhhhhcCCCCCceeeeecccCCCCCCCCh
Q 006762 191 DADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPI 227 (632)
Q Consensus 191 e~~~~GRkdW~~~~~~~~~~LYGWvAradDy~~~g~i 227 (632)
+.+||||+||.+++.. +++||||||++|||++.|||
T Consensus 81 ~~~~~Gr~dW~~~~~~-~~~lYGw~A~~dD~~~~~~i 116 (116)
T PF03468_consen 81 EAQGHGRKDWERRRGG-GSQLYGWVARADDYNSPGPI 116 (116)
T ss_dssp HHTT-SHHHHT-SSS----S-EEEE-BHHHHHSSSHH
T ss_pred HHcCCCHHHHhhccCC-CCceeeeeCchhhccCCCCC
Confidence 9999999999988765 89999999999999999986
No 3
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=99.74 E-value=6.4e-19 Score=134.46 Aligned_cols=43 Identities=77% Similarity=1.188 Sum_probs=41.7
Q ss_pred ccCCCCCCcCccCchhHHhhhccCCCCCCCcChHHHHhHHHHH
Q 006762 42 CPFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKANHLALA 84 (632)
Q Consensus 42 CP~C~gkkk~~y~~~~LLqHA~gvG~sss~r~~k~ka~HraLa 84 (632)
||||+|++|++|.|+||||||+|||+||+.|+++++|+|||||
T Consensus 1 CP~C~~kkk~~Y~~~~LlqHA~gvg~~~~~r~~k~ka~HrALa 43 (43)
T PF03470_consen 1 CPFCPGKKKQDYKYRELLQHASGVGASSSRRSAKEKANHRALA 43 (43)
T ss_pred CCCCCCCCCcceehhHHHHHHHhhCcCcccchHHHHHhhhhhC
Confidence 9999999999999999999999999998889999999999996
No 4
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.97 E-value=0.3 Score=55.97 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHh
Q 006762 395 EALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMK 428 (632)
Q Consensus 395 ~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmK 428 (632)
.+-..+.+++..+...+.++.|+..|+.+|..+.
T Consensus 263 rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~q 296 (546)
T PF07888_consen 263 RLKETVVQLKQEETQAQQLQQENEALKEQLRSAQ 296 (546)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3444455555555555666666666666665553
No 5
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.89 E-value=1.3 Score=51.02 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=44.9
Q ss_pred hhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHH
Q 006762 231 LRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVE 299 (632)
Q Consensus 231 LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yne 299 (632)
.+...+|.........+.......|..|...+....+....|+..+...+.+...+-+|++.|...+.+
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555556666777777777777777788888888888888777777766554433
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.80 E-value=1.9 Score=52.44 Aligned_cols=7 Identities=0% Similarity=-0.363 Sum_probs=3.7
Q ss_pred ChhhHhh
Q 006762 141 SGYWLKR 147 (632)
Q Consensus 141 s~~~L~d 147 (632)
+...+.+
T Consensus 118 ~~~~~~~ 124 (1164)
T TIGR02169 118 RLSEIHD 124 (1164)
T ss_pred cHHHHHH
Confidence 4455555
No 7
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.44 E-value=2.8 Score=51.74 Aligned_cols=152 Identities=20% Similarity=0.205 Sum_probs=83.8
Q ss_pred HhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006762 251 KIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHY------AFVEETRKMQRLARDNVRRILEEQEKLSC 324 (632)
Q Consensus 251 ~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~------~yneE~rkmQ~~a~~~~~rI~~e~ekl~~ 324 (632)
-....+-+.|....-.+..+++|...-..-..|.++.....+|-. .-..|+++|=..++..+++.-.+..+|..
T Consensus 375 ~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~ 454 (1293)
T KOG0996|consen 375 IKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEE 454 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHH
Confidence 355566666666666667777776666665555555544333321 22345777777777778887788888887
Q ss_pred HHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006762 325 ELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLE 404 (632)
Q Consensus 325 eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~Le 404 (632)
.++.-.++|+---..|++...---.+..++++++..-. ..+.-|.-|-+-|....--|.. -.+.+.++...|.
T Consensus 455 ~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~---~~~n~~~~e~~vaesel~~L~~----~~~~~~~~~e~lk 527 (1293)
T KOG0996|consen 455 LLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLL---KQVNEARSELDVAESELDILLS----RHETGLKKVEELK 527 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 77777777776655555544444445555555544321 1122233333333322222222 2344556666666
Q ss_pred HHhhH
Q 006762 405 KQLDA 409 (632)
Q Consensus 405 kqL~~ 409 (632)
.+|.+
T Consensus 528 ~~L~~ 532 (1293)
T KOG0996|consen 528 GKLLA 532 (1293)
T ss_pred HHHHH
Confidence 66655
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.38 E-value=3.7 Score=49.90 Aligned_cols=6 Identities=0% Similarity=0.562 Sum_probs=2.7
Q ss_pred cccCcc
Q 006762 558 EIIDEE 563 (632)
Q Consensus 558 eii~ed 563 (632)
.+|+-+
T Consensus 604 ~~i~~~ 609 (1164)
T TIGR02169 604 DLVEFD 609 (1164)
T ss_pred HHccCc
Confidence 345543
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.38 E-value=2.1 Score=55.65 Aligned_cols=222 Identities=23% Similarity=0.256 Sum_probs=103.3
Q ss_pred ceeeeecccCCC------CCCCChhhhhhhccCCCCHHHHH-----HHh--hhhHhHHHHHHHhHHHhhhhhHHHHHHHh
Q 006762 210 RIYGWFARADDN------TSEGPIGEYLRQEGKLRTVSDIV-----QED--AQSKIHVVAHLASKIDMKNEDLSELQCKF 276 (632)
Q Consensus 210 ~LYGWvAradDy------~~~g~iG~~LrK~gdLKTi~ei~-----~E~--~rk~~~lv~~L~n~I~~knk~l~elE~k~ 276 (632)
..=||+||.+=. .+--+|.+..|.+..||+-+=.- ... ..++...+.....+|......++..|.+-
T Consensus 782 ~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~ 861 (1930)
T KOG0161|consen 782 AIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKR 861 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344666665433 33347888888888888755321 000 01333334444444444445555555555
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH-------HHHHhhHHHHHHHhhhHHHHHHH
Q 006762 277 NETTMSLSRMLEEKDRLHYAFVEETRK---------MQRLARDNVRRILE-------EQEKLSCELETKKKKLDSWSKQL 340 (632)
Q Consensus 277 ne~t~sL~r~meEk~~lh~~yneE~rk---------mQ~~a~~~~~rI~~-------e~ekl~~eLe~k~~eL~~r~k~L 340 (632)
++......++..++..|......|... --..-+..+++++. +.+.....|+.++++++..+..|
T Consensus 862 ~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l 941 (1930)
T KOG0161|consen 862 KELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQEL 941 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544443333333221 11112222222222 22333445555666666555555
Q ss_pred HHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHhhhhhh
Q 006762 341 NKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQL----DAKQKLEME 416 (632)
Q Consensus 341 ~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL----~~kQ~LELE 416 (632)
.+.-..-+..+.+++.|+.....+...|.-....+...-..+.+........-..+...+...|.++ ..+.+||-.
T Consensus 942 ~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~ 1021 (1930)
T KOG0161|consen 942 KEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQ 1021 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555666666655555555555544444322222222222221111222223333333332 245566666
Q ss_pred HHHhhhhHHHHhhcC
Q 006762 417 IEDLKGKLEVMKHLG 431 (632)
Q Consensus 417 i~qLkG~L~VmKh~~ 431 (632)
+..|.+.|+=.+.+.
T Consensus 1022 l~~le~~le~e~~~r 1036 (1930)
T KOG0161|consen 1022 LDDLEVTLEREKRIR 1036 (1930)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666555543
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.36 E-value=4.5 Score=50.54 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhh-------------hccC-Ccccccccc
Q 006762 437 AVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLS-------------DLIG-ARTNIGVKR 502 (632)
Q Consensus 437 ~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~-------------~~~~-~~~~IgiKr 502 (632)
+....+..+.+.+++-.+.+..++.--..+-.+.+...++++.++..+..--. ...+ ....+| +
T Consensus 443 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~G--~ 520 (1163)
T COG1196 443 ELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYG--P 520 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCCccc--h
Confidence 34445555555555555556666555566666777777788877765432100 0000 011122 3
Q ss_pred cCCC--CChhhHHH----HhhcCCc--hhHHHHHHHHhhHHHH-hhcCCCCcceEEEEecCcc------------ccccC
Q 006762 503 LGEI--DPKPFQDA----CKNKFPL--EEAQVEASTLCSLWQE-NLKATEWHPFKIIHVEGTP------------KEIID 561 (632)
Q Consensus 503 mGel--d~kpf~~a----c~~k~~~--~~~~~~a~~lcs~Wq~-~l~~p~WhPFk~v~v~g~~------------keii~ 561 (632)
+|+| -...|..| |...... -+-+..|......|-. .+.-.+.-|-..|...... -.+|+
T Consensus 521 v~~li~v~~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~~~g~~~~a~dli~ 600 (1163)
T COG1196 521 VAELIKVKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLID 600 (1163)
T ss_pred HHHhcCcChHHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhccccccccccccchhHHHHHHhc
Confidence 4444 12244444 4333321 1334566777778865 5666666665555432221 14666
Q ss_pred cccHHHHHHH-HhhHH-HHHHHHHHHHHhhhh
Q 006762 562 EEDEKIKSLK-ELGDE-IYMAVTTALKELNEY 591 (632)
Q Consensus 562 edD~kL~~Lk-e~Gee-v~~aV~~Al~E~ney 591 (632)
-|+.--.-+. =+|.- |+.-+..|..-...+
T Consensus 601 ~d~~~~~~~~~~l~~t~Iv~~l~~A~~l~~~~ 632 (1163)
T COG1196 601 FDPKYEPAVRFVLGDTLVVDDLEQARRLARKL 632 (1163)
T ss_pred CCHHHHHHHHHHhCCeEEecCHHHHHHHHHhc
Confidence 6652222234 44432 233344555555555
No 11
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.30 E-value=2.2 Score=51.83 Aligned_cols=172 Identities=20% Similarity=0.194 Sum_probs=106.4
Q ss_pred HHHHHHHhhhhHhHHH--HHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHH-------------------------
Q 006762 240 VSDIVQEDAQSKIHVV--AHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDR------------------------- 292 (632)
Q Consensus 240 i~ei~~E~~rk~~~lv--~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~------------------------- 292 (632)
-.+|..++.++....- +.|..+|-.-++.+..|+.-....--.+..+|+|+-.
T Consensus 279 ekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~e 358 (1195)
T KOG4643|consen 279 EKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELE 358 (1195)
T ss_pred HHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhh
Confidence 3455666665444433 5666667777777777766665555555555555331
Q ss_pred ----------HHH--HHHHHHHH---------HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Q 006762 293 ----------LHY--AFVEETRK---------MQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERER 351 (632)
Q Consensus 293 ----------lh~--~yneE~rk---------mQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er 351 (632)
|-. +|.-+|.+ .|....+....=+-+-++...-|+-+-..|+-|-.++.++-++.+...
T Consensus 359 n~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~ 438 (1195)
T KOG4643|consen 359 NESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLE 438 (1195)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 22222221 122222222222223333333444455566666666777888888888
Q ss_pred HhhHHHHHhhhhhhchhHhhHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 006762 352 QKLDADRQQNDLRNNSLQLASMEQKK---ADENVLRLVEEQKREKEEALSKILQLEKQLDAKQ 411 (632)
Q Consensus 352 ~kL~~Ek~kn~~~~~~L~lA~~EQ~k---ade~vlkLve~hkrEke~~~~kil~LekqL~~kQ 411 (632)
++|..|.++--..++++..+.-+|++ ++..++.+...+..+-++++++|..|-+-|...+
T Consensus 439 K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~ 501 (1195)
T KOG4643|consen 439 KKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRD 501 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888888844 5666788888888899999999888887776654
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.24 E-value=5.7 Score=51.92 Aligned_cols=48 Identities=25% Similarity=0.454 Sum_probs=30.5
Q ss_pred hhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHh
Q 006762 411 QKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESL 462 (632)
Q Consensus 411 Q~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~ 462 (632)
+.+|-.+..|.|.|..+. +...+++.+.++|...|..++.++..|.+-
T Consensus 1037 ~e~Ek~~rkle~el~~~~----e~~~~~~~~~~el~~~l~kke~El~~l~~k 1084 (1930)
T KOG0161|consen 1037 MELEKAKRKLEGELKDLQ----ESIEELKKQKEELDNQLKKKESELSQLQSK 1084 (1930)
T ss_pred HHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444446666664332 234557788888888888888888766543
No 13
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.08 E-value=2.3 Score=51.07 Aligned_cols=218 Identities=23% Similarity=0.340 Sum_probs=117.6
Q ss_pred HHHHHhHHHhhhhhHHHHHHHhh---------hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006762 255 VAHLASKIDMKNEDLSELQCKFN---------ETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCE 325 (632)
Q Consensus 255 v~~L~n~I~~knk~l~elE~k~n---------e~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~e 325 (632)
+.+|..++..+.+.+..+..++. ....+|.....+++++....++....-.+-..+.....=.++..++..
T Consensus 401 ie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~ 480 (775)
T PF10174_consen 401 IENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAK 480 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777777776666 344566666667777766655432221111112222222233333333
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHH
Q 006762 326 LETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKR--EKEEALSKILQL 403 (632)
Q Consensus 326 Le~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkr--Eke~~~~kil~L 403 (632)
+++--.+|..+.-+|.... .+--+|..-..|+ .+.+.-+.++-.+..+.+-+|....++ ...++..+|..|
T Consensus 481 ~~~LQ~eLsEk~~~l~~~k----ee~s~l~s~~~K~---~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~L 553 (775)
T PF10174_consen 481 LESLQKELSEKELQLEDAK----EEASKLASSQEKK---DSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQL 553 (775)
T ss_pred HHHHhhhhHHHHHHHHHhh----hHHHHHhhccchh---hhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHH
Confidence 3333333333333333211 1122222222222 344455555556666777777777665 234567778888
Q ss_pred HHHhhHHh----hhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHH--HhhccHHH
Q 006762 404 EKQLDAKQ----KLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAK--ERQSNDEL 477 (632)
Q Consensus 404 ekqL~~kQ----~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~k--er~sndEL 477 (632)
|+.....- +-..||.+|.+-|.-+--- -...-++|..|..+|++---.+......++++-+. +|++..+|
T Consensus 554 e~ev~~~~ee~~kaq~EVERLl~~L~~~E~E----K~~ke~ki~~LekeLek~~~~~~~~~~~~~~~k~~~~~~~~~ell 629 (775)
T PF10174_consen 554 EQEVTRYREESEKAQAEVERLLDILREAENE----KNDKEKKIGELEKELEKAQMHLAKQQETVEATKIEENKRKRAELL 629 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHhhhHHH
Confidence 88654332 2246777777644433221 11334778888888877666666655666665544 88899999
Q ss_pred HHHHHH
Q 006762 478 QEARRE 483 (632)
Q Consensus 478 q~aRk~ 483 (632)
.+|+++
T Consensus 630 eea~Re 635 (775)
T PF10174_consen 630 EEALRE 635 (775)
T ss_pred HHHHhh
Confidence 999883
No 14
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.86 E-value=3.9 Score=48.33 Aligned_cols=222 Identities=18% Similarity=0.284 Sum_probs=105.5
Q ss_pred hhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHH-HHHHHHHHHHHHHHHHHHHH
Q 006762 229 EYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRML-EEKDRLHYAFVEETRKMQRL 307 (632)
Q Consensus 229 ~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~m-eEk~~lh~~yneE~rkmQ~~ 307 (632)
+|||+. +|+-.--+..++.|...+|-+-+-.+++..-+. |...-+++.|.- -|.+.|-..-.++|.+|.+
T Consensus 789 rflRrQ-eLreLR~LQkeE~R~qqqL~~k~~~q~Eq~~rr-------FeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq- 859 (1187)
T KOG0579|consen 789 RFLRRQ-ELRELRRLQKEEARQQQQLQAKGIKQVEQQARR-------FEQEQTNKKRTSDLEMENLERQQKQEIEDTEQ- 859 (1187)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-
Confidence 678876 777777788888887777766665544433222 111112222221 1223333333334443332
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHH-----HhhhHHHHHh-hHHHHHhhhhh--hchhHhhHHHHHHhh
Q 006762 308 ARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKR-----EALTERERQK-LDADRQQNDLR--NNSLQLASMEQKKAD 379 (632)
Q Consensus 308 a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~-----~~~~~~er~k-L~~Ek~kn~~~--~~~L~lA~~EQ~kad 379 (632)
.|..+.-++..++|.|-+--|+....+-|+--|. .-.+...|+- |.+-+++...+ -..-..-+.-||-++
T Consensus 860 --~h~~rlR~eakRir~EQekd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~ekdFv~kqqq~le 937 (1187)
T KOG0579|consen 860 --AHEHRLRNEAKRIRIEQEKDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKEKDFVMKQQQNLE 937 (1187)
T ss_pred --HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2222333333344444443333333222221111 0011111110 11111111100 001122334455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHh--hhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhH
Q 006762 380 ENVLRLVEEQKREKEEALSKILQLEKQLD-AKQ--KLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDL 456 (632)
Q Consensus 380 e~vlkLve~hkrEke~~~~kil~LekqL~-~kQ--~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el 456 (632)
-.+-+++++||.|+-.+...-+---++|- ++. --|||-.||+.+-+..|..--|. =. ---+.=|.--+.+|
T Consensus 938 ~~lkrm~~~~k~ema~iErecLm~Kq~LlRarEaaiWElEe~qlqEkhqL~kqqlKDq--Yf----lqRhqlL~rHekE~ 1011 (1187)
T KOG0579|consen 938 AMLKRMAEKHKEEMASIERECLMQKQNLLRAREAAIWELEEKQLQEKHQLHKQQLKDQ--YF----LQRHQLLARHEKEM 1011 (1187)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHH
Confidence 77778888888776655554433222221 111 13888899999888887743211 11 11123355667889
Q ss_pred HHHHHhhHHHH
Q 006762 457 DEMESLNKTLI 467 (632)
Q Consensus 457 ~~~e~~nq~L~ 467 (632)
+.|+-.||.+|
T Consensus 1012 eQmqrynQr~i 1022 (1187)
T KOG0579|consen 1012 EQMQRYNQREI 1022 (1187)
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.62 E-value=9.1 Score=47.88 Aligned_cols=12 Identities=8% Similarity=0.122 Sum_probs=6.3
Q ss_pred HHHHHHHhcCCC
Q 006762 83 LAKYLEVDLAGG 94 (632)
Q Consensus 83 Lak~Le~dl~~~ 94 (632)
+..+|+.=||..
T Consensus 40 I~DAi~fVLG~~ 51 (1163)
T COG1196 40 IVDAIRFVLGEQ 51 (1163)
T ss_pred HHHHHHHHhCcc
Confidence 445555555554
No 16
>PRK11637 AmiB activator; Provisional
Probab=95.54 E-value=3.1 Score=46.09 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=21.5
Q ss_pred HHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHH
Q 006762 314 RILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDAD 357 (632)
Q Consensus 314 rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~E 357 (632)
.++++....+.+|++++.+|+..-.+|..+.+....++..|+.+
T Consensus 170 ~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~ 213 (428)
T PRK11637 170 ETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQA 213 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555554444444444444433
No 17
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.28 E-value=1.3 Score=49.98 Aligned_cols=64 Identities=27% Similarity=0.302 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHhhhHHHHHhhHHHHHhhh-hhhchhHhhHHHHHHhhHHHHHHH-HHHHHHHHH
Q 006762 332 KLDSWSKQLNKREALTERERQKLDADRQQND-LRNNSLQLASMEQKKADENVLRLV-EEQKREKEE 395 (632)
Q Consensus 332 eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~-~~~~~L~lA~~EQ~kade~vlkLv-e~hkrEke~ 395 (632)
+--+.|-++++.=-+.+.+-..|+..+-+-. .-.+.|++...|....+-..|.|- |.||+||+.
T Consensus 443 ksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~eken 508 (527)
T PF15066_consen 443 KSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKEN 508 (527)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345677777777777777777777653322 235778888877777777777774 456666654
No 18
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.28 E-value=12 Score=47.09 Aligned_cols=226 Identities=19% Similarity=0.239 Sum_probs=95.5
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 006762 253 HVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKK 332 (632)
Q Consensus 253 ~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~e 332 (632)
+....+...+..-+..+..++..+++....++.-...-..-+...+.++..+++.-..+...=+.+-...-..|..-..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~ 360 (1201)
T PF12128_consen 281 QEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNE 360 (1201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHH
Confidence 33333444444444444444444444444444444444444455555555555555544332233333444444444555
Q ss_pred hHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---
Q 006762 333 LDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDA--- 409 (632)
Q Consensus 333 L~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~--- 409 (632)
++....+++.+......-..+....+++-....+. ..+...+. .-.+-+...+.++...+.+..|+.++.+
T Consensus 361 ~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~----~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~ 434 (1201)
T PF12128_consen 361 LENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNR----QQERLQAQ--QDEIREEKAERREQIEEEYQALEQELRQQSQ 434 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444444333333333321111110 01111011 1222233333344555555555555542
Q ss_pred --HhhhhhhHHHhhhhHHHHhhcCC--CCcHHHHHHHHHHHHH-------HHhHHhhHHHHHHhhHHHHHHHhhccHHHH
Q 006762 410 --KQKLEMEIEDLKGKLEVMKHLGD--EDDAAVQKKMKEMNDE-------LESKIDDLDEMESLNKTLIAKERQSNDELQ 478 (632)
Q Consensus 410 --kQ~LELEi~qLkG~L~VmKh~~~--~~d~~~~~k~~~l~~~-------l~ek~~el~~~e~~nq~L~~ker~sndELq 478 (632)
.+.+.-+-.+++..|..+++.-. .-.++....++.+... +......+..++.--+.+-..-.+..++|+
T Consensus 435 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 514 (1201)
T PF12128_consen 435 EQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELR 514 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333344444444444311 1233444444444443 333444444444444444444455566777
Q ss_pred HHHHHH
Q 006762 479 EARREL 484 (632)
Q Consensus 479 ~aRk~l 484 (632)
.+|.++
T Consensus 515 ~~~~~~ 520 (1201)
T PF12128_consen 515 QARREL 520 (1201)
T ss_pred HHHHHH
Confidence 766654
No 19
>PRK11637 AmiB activator; Provisional
Probab=95.22 E-value=6.4 Score=43.66 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhh
Q 006762 382 VLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKH 429 (632)
Q Consensus 382 vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh 429 (632)
-..+++..+..+.++.....+|+.++...+.+.-+.++-+..|+..+.
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~ 215 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARN 215 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888888888888888888888888888888876664
No 20
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.14 E-value=12 Score=46.29 Aligned_cols=53 Identities=26% Similarity=0.461 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHhhHH--HHHHHhhccHHHHHHHHHHHHhh
Q 006762 436 AAVQKKMKEMNDELESKIDDLDEMESLNKT--LIAKERQSNDELQEARRELIQGL 488 (632)
Q Consensus 436 ~~~~~k~~~l~~~l~ek~~el~~~e~~nq~--L~~ker~sndELq~aRk~lI~~l 488 (632)
+++++.|..|+...+..++.+.+++.+... +-.++.+--+++..+=+++|+.+
T Consensus 867 ~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~~~k~~~~k~~~~e~L~~l 921 (1074)
T KOG0250|consen 867 AEIKREIKRLKRQIQMCEESLGELEELHRGLHEARKELKKEDELKVTLDELLKAL 921 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 688899999999999999999999999888 44566666677777655555543
No 21
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.07 E-value=13 Score=46.35 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=39.3
Q ss_pred hHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006762 250 SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRR 314 (632)
Q Consensus 250 k~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~r 314 (632)
..+.-+.+|...-+-.-.+-+..+..+.++..++..+.++...++..-..+-++++..+.+..++
T Consensus 303 ~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k 367 (1293)
T KOG0996|consen 303 PKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEK 367 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHH
Confidence 34556666665555444555556666666666666666666666666666666666555555443
No 22
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.94 E-value=4.8 Score=40.69 Aligned_cols=136 Identities=29% Similarity=0.350 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHh-hhHHHHHhhHHHHHhhhhhhc
Q 006762 288 EEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREA-LTERERQKLDADRQQNDLRNN 366 (632)
Q Consensus 288 eEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~-~~~~er~kL~~Ek~kn~~~~~ 366 (632)
.+--++++.|++|++-++..-|....++-.-..+++ +.+..+..+....+.|.++.. .+=.+|.+|...
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk-~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~k--------- 126 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLK-DKDEELLKTKDELKHLKKLSEDKNLAEREELQRK--------- 126 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH---------
Confidence 445588999999999999988887776654444433 444444455555555555433 233344444322
Q ss_pred hhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHH
Q 006762 367 SLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMN 446 (632)
Q Consensus 367 ~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~ 446 (632)
++......++.-.+|..|+++| +|.-.-.+-.|.+- .+|+.++.
T Consensus 127 -------------------L~~~~~~l~~~~~ki~~Lek~l------eL~~k~~~rql~~e-----------~kK~~~~~ 170 (194)
T PF15619_consen 127 -------------------LSQLEQKLQEKEKKIQELEKQL------ELENKSFRRQLASE-----------KKKHKEAQ 170 (194)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHH-----------HHHHHHHH
Confidence 2233344555566777777754 44444444444432 34555555
Q ss_pred HHHHhHHhhHHHHHHhhHHHHHHHhh
Q 006762 447 DELESKIDDLDEMESLNKTLIAKERQ 472 (632)
Q Consensus 447 ~~l~ek~~el~~~e~~nq~L~~ker~ 472 (632)
.++..-..+. +.|++.|-.|+|.
T Consensus 171 ~~~~~l~~ei---~~L~~klkEKer~ 193 (194)
T PF15619_consen 171 EEVKSLQEEI---QRLNQKLKEKERE 193 (194)
T ss_pred HHHHHHHHHH---HHHHHHHHHHhhc
Confidence 5554444444 4677877777764
No 23
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.76 E-value=16 Score=45.81 Aligned_cols=189 Identities=20% Similarity=0.237 Sum_probs=103.9
Q ss_pred HHHHhhhhhHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhH
Q 006762 272 LQCKFNETTMSLSRMLEEKDR---LHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTE 348 (632)
Q Consensus 272 lE~k~ne~t~sL~r~meEk~~---lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~ 348 (632)
++..+++....+...-+++.. +...+.+|+... +.-.++.+-..+.-.+++.+|+.....+-.......++.....
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~-q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~ 570 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA-QKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSK 570 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhh
Confidence 335556665555555555553 367788888888 4445566666677777888888766666555555555555555
Q ss_pred HHHHhhHHHHHhhhh---hhchhHhhHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhHHhhhhhhHH
Q 006762 349 RERQKLDADRQQNDL---RNNSLQLASMEQKKADENVLRLVEE-------QKREKEEALSKILQLEKQLDAKQKLEMEIE 418 (632)
Q Consensus 349 ~er~kL~~Ek~kn~~---~~~~L~lA~~EQ~kade~vlkLve~-------hkrEke~~~~kil~LekqL~~kQ~LELEi~ 418 (632)
.=-..++++.+.+.. .+..|+.+...--+....+.-.++. +..+..++-+.|.-|+.-+.+++..++-++
T Consensus 571 e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 571 ELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred hhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 444555555553332 2333333322222222233333333 345667778888888888888888777777
Q ss_pred HhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHH
Q 006762 419 DLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTL 466 (632)
Q Consensus 419 qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L 466 (632)
+|+-... .+..+-+-+.. =..+.-+|+...++++.+.+-|+.+
T Consensus 651 el~r~~~--e~~~~~ek~~~---e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 651 ELKRENQ--ERISDSEKEAL---EIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHH--HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7554332 22211111111 1234455555566666666666665
No 24
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.75 E-value=13 Score=44.78 Aligned_cols=131 Identities=21% Similarity=0.282 Sum_probs=69.4
Q ss_pred HHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHH----HHhhHHHHHhhh-------hhhchhHhhHHHHHHhhHHHHH
Q 006762 316 LEEQEKLSCELETKKKKLDSWSKQLNKREALTERE----RQKLDADRQQND-------LRNNSLQLASMEQKKADENVLR 384 (632)
Q Consensus 316 ~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~e----r~kL~~Ek~kn~-------~~~~~L~lA~~EQ~kade~vlk 384 (632)
..+.+-+..+|+.+|+.|++|..-|.+--.+-+.- .+-|+.+++--+ .-...|+++.++-.+.--++--
T Consensus 258 d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc 337 (1265)
T KOG0976|consen 258 DMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRC 337 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888889999988877665322222211 112222222111 1144566666555443333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHH
Q 006762 385 LVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLD 457 (632)
Q Consensus 385 Lve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~ 457 (632)
-+-++++--|-+-++..+|||+-|. +++.++.++.+++-. .+.+..+-++..++++.++++.
T Consensus 338 ~LlEarrk~egfddk~~eLEKkrd~---al~dvr~i~e~k~nv--------e~elqsL~~l~aerqeQidelK 399 (1265)
T KOG0976|consen 338 ALLEARRKAEGFDDKLNELEKKRDM---ALMDVRSIQEKKENV--------EEELQSLLELQAERQEQIDELK 399 (1265)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHH---HHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777888888887663 444444444444321 1224445555566655555554
No 25
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.20 E-value=18 Score=44.01 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=11.3
Q ss_pred HHHHhhhhcCCCCccccc
Q 006762 584 ALKELNEYNPSGRYVIPD 601 (632)
Q Consensus 584 Al~E~neyN~sgry~v~e 601 (632)
|...+..+.+.|+.+.+.
T Consensus 634 a~~~~~~~~~~g~~v~~~ 651 (1179)
T TIGR02168 634 ALELAKKLRPGYRIVTLD 651 (1179)
T ss_pred HHHHHHHcCCCceEEecC
Confidence 666666666777655543
No 26
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.15 E-value=8.5 Score=45.87 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=22.8
Q ss_pred HhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHH
Q 006762 259 ASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEET 301 (632)
Q Consensus 259 ~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~ 301 (632)
+..|....+.-++|+.+++..+.+.+.-+.-...|-..+.+|.
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666666665555544444444444444443
No 27
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=1 Score=42.40 Aligned_cols=93 Identities=34% Similarity=0.497 Sum_probs=70.4
Q ss_pred HHHHHHHHHH----HHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHH---------HHHHHHHHhHHhhHHHHH
Q 006762 394 EEALSKILQL----EKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKM---------KEMNDELESKIDDLDEME 460 (632)
Q Consensus 394 e~~~~kil~L----ekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~---------~~l~~~l~ek~~el~~~e 460 (632)
++.+++..+| +..+.+||+||.++...+-.|+-...++ +|..+++++ +++..+|+++.+.| +
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~--eD~~vYk~VG~llvk~~k~~~~~eL~er~E~L---e 83 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLD--EDAPVYKKVGNLLVKVSKEEAVDELEERKETL---E 83 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cccHHHHHhhhHHhhhhHHHHHHHHHHHHHHH---H
Confidence 3444555444 4455689999999999999888888774 466788776 45566665555554 5
Q ss_pred HhhHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q 006762 461 SLNKTLIAKERQSNDELQEARRELIQGLSDL 491 (632)
Q Consensus 461 ~~nq~L~~ker~sndELq~aRk~lI~~l~~~ 491 (632)
---.||-..|+....+|++-+.+|++-|..-
T Consensus 84 ~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 84 LRIKTLEKQEEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7788999999999999999999999888753
No 28
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.06 E-value=21 Score=44.31 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=40.6
Q ss_pred hhHhHHHHHHHhHHHhhhhhHHHHHHHhhh---hhHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006762 249 QSKIHVVAHLASKIDMKNEDLSELQCKFNE---TTMSLSRMLEE-----------KDRLHYAFVEETRKMQRLARDNVRR 314 (632)
Q Consensus 249 rk~~~lv~~L~n~I~~knk~l~elE~k~ne---~t~sL~r~meE-----------k~~lh~~yneE~rkmQ~~a~~~~~r 314 (632)
..+..+|+.+...|..-.+++++++.+... +.+.+.+.+.= +++-.....++|.+.|...-...++
T Consensus 224 ~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~k 303 (1074)
T KOG0250|consen 224 DHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEK 303 (1074)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888777663 33333333322 3344444555666666665555444
Q ss_pred H
Q 006762 315 I 315 (632)
Q Consensus 315 I 315 (632)
|
T Consensus 304 i 304 (1074)
T KOG0250|consen 304 I 304 (1074)
T ss_pred H
Confidence 4
No 29
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.68 E-value=25 Score=44.03 Aligned_cols=61 Identities=13% Similarity=0.281 Sum_probs=45.7
Q ss_pred Chhhhhhhcc-CCCCHHHHHHHhhh----hHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhH
Q 006762 226 PIGEYLRQEG-KLRTVSDIVQEDAQ----SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRM 286 (632)
Q Consensus 226 ~iG~~LrK~g-dLKTi~ei~~E~~r----k~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~ 286 (632)
.|++||-..+ |.-||.++.++-.. -+-.+|.+|+++|..--..|..++.-++.|---++|+
T Consensus 1479 ~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra 1544 (1758)
T KOG0994|consen 1479 QVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARA 1544 (1758)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHH
Confidence 4788887765 77788777766553 5577888999999888888888888888776555544
No 30
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.62 E-value=5.3 Score=42.93 Aligned_cols=41 Identities=27% Similarity=0.438 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhh-HHhhhhhhHHHhhhhHHHHhhc
Q 006762 390 KREKEEALSKILQLEKQLD-AKQKLEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 390 krEke~~~~kil~LekqL~-~kQ~LELEi~qLkG~L~VmKh~ 430 (632)
..++.++...|.++++.++ .+..=.-||.+|+.++..+.++
T Consensus 250 ~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 250 EEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665 3333555666666666655554
No 31
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.26 E-value=26 Score=42.88 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=16.5
Q ss_pred HHHHHHhHHhhHHHHHHhhHHHHH
Q 006762 445 MNDELESKIDDLDEMESLNKTLIA 468 (632)
Q Consensus 445 l~~~l~ek~~el~~~e~~nq~L~~ 468 (632)
--..|+|.+.+|+.|+++|-.|+-
T Consensus 463 kVklLeetv~dlEalee~~EQL~E 486 (1243)
T KOG0971|consen 463 KVKLLEETVGDLEALEEMNEQLQE 486 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566667778888888777763
No 32
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.24 E-value=16 Score=44.79 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=15.7
Q ss_pred HHHHHHHhhhhcCCCCcccccc
Q 006762 581 VTTALKELNEYNPSGRYVIPDL 602 (632)
Q Consensus 581 V~~Al~E~neyN~sgry~v~el 602 (632)
.|+-|.+||.-|. ||..+--|
T Consensus 561 ATkIl~~~n~m~~-GrVTF~PL 581 (1200)
T KOG0964|consen 561 ATKILRKLNKMKG-GRVTFMPL 581 (1200)
T ss_pred HHHHHHHHHhccC-CeeEEeec
Confidence 4677888888888 88766554
No 33
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.24 E-value=18 Score=40.94 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhH
Q 006762 390 KREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKL 424 (632)
Q Consensus 390 krEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L 424 (632)
+.+.+.+...|.+++......+.+.-.+..++..+
T Consensus 312 ~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i 346 (562)
T PHA02562 312 QHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKI 346 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=93.19 E-value=24 Score=42.37 Aligned_cols=13 Identities=15% Similarity=0.072 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHh
Q 006762 395 EALSKILQLEKQL 407 (632)
Q Consensus 395 ~~~~kil~LekqL 407 (632)
.+...+..|+..+
T Consensus 346 ~~~~~~~~le~~~ 358 (880)
T PRK02224 346 SLREDADDLEERA 358 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
No 35
>PRK09039 hypothetical protein; Validated
Probab=92.45 E-value=17 Score=39.57 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHhhhhccCCccccccc
Q 006762 474 NDELQEARRELIQGLSDLIGARTNIGVK 501 (632)
Q Consensus 474 ndELq~aRk~lI~~l~~~~~~~~~IgiK 501 (632)
..||...|.+++..|.++.+++..|.|.
T Consensus 189 ~~~l~~~~~~~~~~l~~~~~~~~~iri~ 216 (343)
T PRK09039 189 VQELNRYRSEFFGRLREILGDREGIRIV 216 (343)
T ss_pred HHHHHHhHHHHHHHHHHHhCCCCCcEEE
Confidence 3689999999999999888888777776
No 36
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.35 E-value=23 Score=39.99 Aligned_cols=174 Identities=20% Similarity=0.253 Sum_probs=105.3
Q ss_pred CHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 006762 239 TVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFV--EETRKMQRLARDNVRRIL 316 (632)
Q Consensus 239 Ti~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yn--eE~rkmQ~~a~~~~~rI~ 316 (632)
+..|+-.+....-.. .+.-++..-.+.+++|+---+.+..--.+++.|+-+|...|+ ||+++=|..-... +|.
T Consensus 204 ~tedl~~e~mee~r~---di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE--~l~ 278 (502)
T KOG0982|consen 204 ETEDLLVEGMEEERI---DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEE--SLS 278 (502)
T ss_pred chhhhhhhhhhchhh---hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHH
Confidence 445555555543322 244556666677778877777777777788888888877666 5665555432211 111
Q ss_pred HHHHHhhHHH---------------HHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHH
Q 006762 317 EEQEKLSCEL---------------ETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADEN 381 (632)
Q Consensus 317 ~e~ekl~~eL---------------e~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~ 381 (632)
+-++...|+ +.+.+-|+.-..+|..+.|....--.||..++++-...-..+.+-..+.|+-...
T Consensus 279 -Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~r 357 (502)
T KOG0982|consen 279 -EEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVR 357 (502)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222 2333444444455555666666666677777776666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHH
Q 006762 382 VLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIE 418 (632)
Q Consensus 382 vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~ 418 (632)
+.--+-.+.++|++...=|..|-++|.--|.+-+..+
T Consensus 358 m~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 358 MNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLA 394 (502)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666888999999989988888876655444433
No 37
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.27 E-value=42 Score=42.77 Aligned_cols=9 Identities=22% Similarity=0.774 Sum_probs=4.7
Q ss_pred HHhhHHHHh
Q 006762 530 TLCSLWQEN 538 (632)
Q Consensus 530 ~lcs~Wq~~ 538 (632)
.+-.+|+.-
T Consensus 1145 ~~~~~w~~~ 1153 (1311)
T TIGR00606 1145 IIRDLWRST 1153 (1311)
T ss_pred HHHHHHHHH
Confidence 344566654
No 38
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.24 E-value=49 Score=43.48 Aligned_cols=169 Identities=21% Similarity=0.278 Sum_probs=95.9
Q ss_pred hHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHH------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhH
Q 006762 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRL------HYAFVEETRKMQRLAR-DNVRRILEEQEKLSC 324 (632)
Q Consensus 252 ~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~l------h~~yneE~rkmQ~~a~-~~~~rI~~e~ekl~~ 324 (632)
..-+..|..+|..-+..+.-|++...++...+...+.+..+| +...+.++..-+..+- ..+.+.-.+..+|..
T Consensus 1242 ~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~ 1321 (1822)
T KOG4674|consen 1242 LEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKE 1321 (1822)
T ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 344577888888888888888888888888888777776544 2334444444433322 235666667777777
Q ss_pred HHHHHHhhhHHHHHHHHHHH-------hhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006762 325 ELETKKKKLDSWSKQLNKRE-------ALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEAL 397 (632)
Q Consensus 325 eLe~k~~eL~~r~k~L~k~~-------~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~ 397 (632)
+|+++-+.+..=.+.++.+. -....+++.|..+.+.-...+..|.-|--|+.++-..+...-..|.-..+...
T Consensus 1322 el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~~~~~~~e~t~ 1401 (1822)
T KOG4674|consen 1322 ELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKKAHELMQEDTS 1401 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666665555555444 12223444454444443334444444444444443444444455555555555
Q ss_pred HHHHHHHHHhhHHhhhhhhHHHhhhhH
Q 006762 398 SKILQLEKQLDAKQKLEMEIEDLKGKL 424 (632)
Q Consensus 398 ~kil~LekqL~~kQ~LELEi~qLkG~L 424 (632)
.+...+...+. |.-||+.|+.+|
T Consensus 1402 rk~e~~~~k~~----~~~e~~sl~eeL 1424 (1822)
T KOG4674|consen 1402 RKLEKLKEKLE----LSEELESLKEEL 1424 (1822)
T ss_pred HHHHHHHHHHh----HHHHHHHHHHHH
Confidence 55555444443 445555555555
No 39
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.98 E-value=45 Score=42.50 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHH
Q 006762 396 ALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLD 457 (632)
Q Consensus 396 ~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~ 457 (632)
+...-++|..++..++.|+-++.+|+..++-..- +-.++...|..|..++.....+++
T Consensus 869 l~~~klkl~~~l~~r~~le~~L~el~~el~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1311)
T TIGR00606 869 LKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR----EIKDAKEQDSPLETFLEKDQQEKE 926 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4555566666777888888888888777654322 122334444444444444444443
No 40
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.92 E-value=40 Score=41.78 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=64.2
Q ss_pred HhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006762 251 KIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKK 330 (632)
Q Consensus 251 ~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~ 330 (632)
....+.+++..|+....++..+.+.++.+...+...-++...|-++--.||-.--..-.....-.-.+.-+...-|..+.
T Consensus 242 ~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~ 321 (1174)
T KOG0933|consen 242 AEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKK 321 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777777777777777666666655555555555444443332333333344444455556666666
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHhhHHH
Q 006762 331 KKLDSWSKQLNKREALTERERQKLDAD 357 (632)
Q Consensus 331 ~eL~~r~k~L~k~~~~~~~er~kL~~E 357 (632)
..|+--.+.++++.-.-..+|++|...
T Consensus 322 ~tl~~e~~k~e~i~~~i~e~~~~l~~k 348 (1174)
T KOG0933|consen 322 ETLNGEEEKLEEIRKNIEEDRKKLKEK 348 (1174)
T ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 777777777777777777777777543
No 41
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.80 E-value=41 Score=41.69 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHH
Q 006762 396 ALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMN 446 (632)
Q Consensus 396 ~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~ 446 (632)
+-.-+...|+-+.+++..+|+++.|.+-+.-|+. +..+..++|+.|.
T Consensus 887 i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~----e~~~~~k~v~~l~ 933 (1174)
T KOG0933|consen 887 ISGLLTSQEKCLSEKSDGELERKKLEHEVTKLES----EKANARKEVEKLL 933 (1174)
T ss_pred HhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhh----hHHHHHHHHHHHH
Confidence 3334456677788999999999999988877665 2344455555443
No 42
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=91.67 E-value=11 Score=44.61 Aligned_cols=204 Identities=22% Similarity=0.238 Sum_probs=107.4
Q ss_pred HhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006762 251 KIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAF----VEETRKMQRLARDNVRRILEEQEKLSCEL 326 (632)
Q Consensus 251 ~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~y----neE~rkmQ~~a~~~~~rI~~e~ekl~~eL 326 (632)
.......+.-.+...+..+...+..+.-...++..+-.+...++... .+...+++..+.+...+...+...+..+|
T Consensus 112 ~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~l 191 (670)
T KOG0239|consen 112 LQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLSKVTPENSLSLLDLALKESLKLESDLGDLVTEL 191 (670)
T ss_pred cccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccccccchhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444444445555555555666666666666666665544332221 22223355578888888888888888888
Q ss_pred HHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006762 327 ETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQ 406 (632)
Q Consensus 327 e~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~Lekq 406 (632)
+..+...+.-..+|.. ...++..|+.... ....+..++..|+..
T Consensus 192 ~~v~~~~~~~~~~l~~----~~~~~~~l~~~~~--------------------------------~~~~~~~~~~~l~~~ 235 (670)
T KOG0239|consen 192 EHVTNSISELESVLKS----AQEERRVLADSLG--------------------------------NYADLRRNIKPLEGL 235 (670)
T ss_pred HHHHHHHHHHHHHhhh----hHHHHHHHHHHhh--------------------------------hhhhHHHhhhhhhhh
Confidence 8777777776666665 2223333332211 111112222222222
Q ss_pred hhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHH
Q 006762 407 LDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQ 486 (632)
Q Consensus 407 L~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~ 486 (632)
.....+- |..|+..|+.+++-..+-...+.....++.+-+..-..-+..+.+++..|+.++ .-+.+|++|=+
T Consensus 236 ~~~~~~~---i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-----~e~~~r~kL~N 307 (670)
T KOG0239|consen 236 ESTIKKK---IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-----KEKEERRKLHN 307 (670)
T ss_pred hhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 2221111 444444444444433222334444455555555544555666778888887655 23467888877
Q ss_pred hhhhccCCccccccc
Q 006762 487 GLSDLIGARTNIGVK 501 (632)
Q Consensus 487 ~l~~~~~~~~~IgiK 501 (632)
-+.++ ..||.|.
T Consensus 308 ~i~eL---kGnIRV~ 319 (670)
T KOG0239|consen 308 EILEL---KGNIRVF 319 (670)
T ss_pred HHHHh---hcCceEE
Confidence 77766 4467764
No 43
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.37 E-value=60 Score=42.72 Aligned_cols=73 Identities=26% Similarity=0.445 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHh
Q 006762 392 EKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKER 471 (632)
Q Consensus 392 Eke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker 471 (632)
+-+.+.+.|-.|+.+|..++.+--|+...-+.++ ..++++++++..+.+.+...+..++++++.|-...+
T Consensus 1308 ~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q----------~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~ 1377 (1822)
T KOG4674|consen 1308 DYEKLKSEISRLKEELEEKENLIAELKKELNRLQ----------EKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALS 1377 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555777777777766666555544444444 466777777777777777777777777777765544
Q ss_pred hcc
Q 006762 472 QSN 474 (632)
Q Consensus 472 ~sn 474 (632)
.-|
T Consensus 1378 e~~ 1380 (1822)
T KOG4674|consen 1378 EKN 1380 (1822)
T ss_pred HHH
Confidence 433
No 44
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=91.18 E-value=23 Score=37.61 Aligned_cols=158 Identities=23% Similarity=0.348 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhh
Q 006762 292 RLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLA 371 (632)
Q Consensus 292 ~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA 371 (632)
.||..|..-...|+.-.++ .-.....+-.+|+++...|+.|-+.|. ++..|-+.+.+.-|....-.+.+-+
T Consensus 20 ~l~~~ykq~f~~~reEl~E----FQegSrE~EaelesqL~q~etrnrdl~-----t~nqrl~~E~e~~Kek~e~q~~q~y 90 (333)
T KOG1853|consen 20 LLHHEYKQHFLQMREELNE----FQEGSREIEAELESQLDQLETRNRDLE-----TRNQRLTTEQERNKEKQEDQRVQFY 90 (333)
T ss_pred hhHHHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677776655555444332 222334455677888777777776654 4566667777766666666666666
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHH
Q 006762 372 SMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLD----AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMND 447 (632)
Q Consensus 372 ~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~----~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~ 447 (632)
..+-+-.|+.. .-+-.||.+++.|-+||+--| +|.+-+.-.+-+..+|+ ....++.=|..
T Consensus 91 ~q~s~Leddls-----qt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLn-----------qAIErnAfLES 154 (333)
T KOG1853|consen 91 QQESQLEDDLS-----QTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLN-----------QAIERNAFLES 154 (333)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHH-----------HHHHHHHHHHH
Confidence 65554444321 112356777788888876544 23333333333333333 22456677888
Q ss_pred HHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHH
Q 006762 448 ELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELI 485 (632)
Q Consensus 448 ~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI 485 (632)
+|.||+--|+.+. -| .||-.+.|++|-
T Consensus 155 ELdEke~llesvq----RL-------kdEardlrqela 181 (333)
T KOG1853|consen 155 ELDEKEVLLESVQ----RL-------KDEARDLRQELA 181 (333)
T ss_pred HhhHHHHHHHHHH----HH-------HHHHHHHHHHHH
Confidence 8888877665433 22 366667777663
No 45
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.88 E-value=45 Score=40.40 Aligned_cols=21 Identities=33% Similarity=0.740 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhHHhhHH
Q 006762 437 AVQKKMKEMNDELESKIDDLD 457 (632)
Q Consensus 437 ~~~~k~~~l~~~l~ek~~el~ 457 (632)
.|+.++++|+.+.+.|..+++
T Consensus 546 ~ikdqldelskE~esk~~eid 566 (1118)
T KOG1029|consen 546 AIKDQLDELSKETESKLNEID 566 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 345566777766666655554
No 46
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=89.16 E-value=74 Score=40.31 Aligned_cols=52 Identities=25% Similarity=0.187 Sum_probs=27.9
Q ss_pred cccCcccHHHHHHHHhhHHHHHHHHHHHHHh-h--hh---cCCCCcccccccccccCcc
Q 006762 558 EIIDEEDEKIKSLKELGDEIYMAVTTALKEL-N--EY---NPSGRYVIPDLWNFKEGRK 610 (632)
Q Consensus 558 eii~edD~kL~~Lke~Geev~~aV~~Al~E~-n--ey---N~sgry~v~elWN~ke~rk 610 (632)
+|+..|+++.+.+..- -.|-.|+++-|-|| | .| +++|+++.--+=|=+|.||
T Consensus 965 ~i~~~d~efs~~~~~e-~~v~~aa~~kl~eif~r~~~~i~~~~~~~t~~l~kkE~EkrK 1022 (1317)
T KOG0612|consen 965 EIVLRDAEFSKKLVTE-RDVKHAAVNKLAEIFNRKTSLIPGKKSTNTLDLRKKEKEKRK 1022 (1317)
T ss_pred hHhhccHHHHhhhhhH-HHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHH
Confidence 5666677777766511 23444555545443 2 22 3445455555556667777
No 47
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.74 E-value=39 Score=36.54 Aligned_cols=59 Identities=24% Similarity=0.428 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhHHhhhhhhH---HHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhH
Q 006762 394 EEALSKILQLEKQLDAKQKLEMEI---EDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDL 456 (632)
Q Consensus 394 e~~~~kil~LekqL~~kQ~LELEi---~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el 456 (632)
..+..+|-+|+++|...++-.-.- +.|.....-.+-- -.++..+|.+|..+.++.-.+|
T Consensus 134 ~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~----~~e~~eki~~la~eaqe~he~m 195 (294)
T COG1340 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKK----AREIHEKIQELANEAQEYHEEM 195 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777666433322 2222333322221 2345555555555554444333
No 48
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.68 E-value=59 Score=37.45 Aligned_cols=95 Identities=15% Similarity=0.172 Sum_probs=58.7
Q ss_pred hHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 006762 250 SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETK 329 (632)
Q Consensus 250 k~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k 329 (632)
...+.|..|...|...+.-+.-......+.......++.+++.....|..++..-+..-..-...+ .-...|...|..-
T Consensus 169 ~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a 247 (522)
T PF05701_consen 169 ENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAEA 247 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 456677778888887777777776666666666666667777777777777654444333333333 4445555556655
Q ss_pred HhhhHHHHHHHHHHHh
Q 006762 330 KKKLDSWSKQLNKREA 345 (632)
Q Consensus 330 ~~eL~~r~k~L~k~~~ 345 (632)
...+..-..+|.....
T Consensus 248 ~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 248 SAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566555555554443
No 49
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.06 E-value=22 Score=40.36 Aligned_cols=89 Identities=20% Similarity=0.405 Sum_probs=70.0
Q ss_pred HHHHHHHHHhh-HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHH
Q 006762 398 SKILQLEKQLD-AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDE 476 (632)
Q Consensus 398 ~kil~LekqL~-~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndE 476 (632)
.+++.|-+|-+ -+|.|.-+..+|+..|.+. +-++++ ..+|.+|+.+|+-..++.+..+.++-+|...--+-.+.
T Consensus 307 ~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~----e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~d 381 (521)
T KOG1937|consen 307 KQMEELTQQWEDTRQPLLQKKLQLREELKNL----ETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDD 381 (521)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc----cchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCch
Confidence 45666666654 5777887777887777654 345566 78999999999999999999999999999877777777
Q ss_pred HHHHHHHHHHhhhhccC
Q 006762 477 LQEARRELIQGLSDLIG 493 (632)
Q Consensus 477 Lq~aRk~lI~~l~~~~~ 493 (632)
.+ |+..+.++.++.+
T Consensus 382 v~--rk~ytqrikEi~g 396 (521)
T KOG1937|consen 382 VQ--RKVYTQRIKEIDG 396 (521)
T ss_pred hH--HHHHHHHHHHHHh
Confidence 77 9999999888754
No 50
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=86.88 E-value=65 Score=37.11 Aligned_cols=40 Identities=38% Similarity=0.547 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhh-------hHHHhhhhHHHHh
Q 006762 389 QKREKEEALSKILQLEKQLDAKQKLEM-------EIEDLKGKLEVMK 428 (632)
Q Consensus 389 hkrEke~~~~kil~LekqL~~kQ~LEL-------Ei~qLkG~L~VmK 428 (632)
-+.+.+.+..++.+|..++...+.|+- +|.-|+..|..-+
T Consensus 216 ~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~ 262 (522)
T PF05701_consen 216 WEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAK 262 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888887777765 4444555444333
No 51
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.80 E-value=1.1e+02 Score=39.79 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=19.9
Q ss_pred CCcHHHHHHHHHHHHHHHhHHhhHHHHHH
Q 006762 433 EDDAAVQKKMKEMNDELESKIDDLDEMES 461 (632)
Q Consensus 433 ~~d~~~~~k~~~l~~~l~ek~~el~~~e~ 461 (632)
=.++++...++.....+.++...+.+++.
T Consensus 435 ~SdEeLe~~LenF~aklee~e~qL~elE~ 463 (1486)
T PRK04863 435 LTADNAEDWLEEFQAKEQEATEELLSLEQ 463 (1486)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777777765543
No 52
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=86.60 E-value=80 Score=37.83 Aligned_cols=136 Identities=20% Similarity=0.229 Sum_probs=89.5
Q ss_pred HHhhhhhHHHHhHHHHHHHHHHHHHH---HHHHH----------HHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHH
Q 006762 274 CKFNETTMSLSRMLEEKDRLHYAFVE---ETRKM----------QRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQL 340 (632)
Q Consensus 274 ~k~ne~t~sL~r~meEk~~lh~~yne---E~rkm----------Q~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L 340 (632)
.++.+.|.+...+--|+..|.+.... |+.++ .......++.....+..||.+|++-+.+|.....++
T Consensus 485 LKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev 564 (786)
T PF05483_consen 485 LKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEV 564 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666655444332 22222 334556777888888899999999999999888888
Q ss_pred HHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006762 341 NKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDA 409 (632)
Q Consensus 341 ~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~ 409 (632)
.-.--.++.-+|..+-++-+...+...|.=-.---+|.-++-.+.+++-..+...+-.+|..--+|+..
T Consensus 565 ~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~ 633 (786)
T PF05483_consen 565 KCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNV 633 (786)
T ss_pred HHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876677777777777776665555444433333344566677777777777777777777666666553
No 53
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=86.32 E-value=0.39 Score=38.42 Aligned_cols=23 Identities=26% Similarity=0.917 Sum_probs=17.9
Q ss_pred CeeeccCCCCCCcCccCchhHHhhhcc
Q 006762 38 GTLRCPFCSGKKKQDYKHKDLLQHASG 64 (632)
Q Consensus 38 ~~~~CP~C~gkkk~~y~~~~LLqHA~g 64 (632)
.+|.||||. + .++...|+.|-..
T Consensus 1 ~~f~CP~C~-~---~~~~~~L~~H~~~ 23 (54)
T PF05605_consen 1 DSFTCPYCG-K---GFSESSLVEHCED 23 (54)
T ss_pred CCcCCCCCC-C---ccCHHHHHHHHHh
Confidence 379999997 3 3778899988654
No 54
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=86.08 E-value=72 Score=38.95 Aligned_cols=100 Identities=21% Similarity=0.254 Sum_probs=65.5
Q ss_pred HHhHHHhhhhhHHHHHHHhhhhhHHHHhH-------HHHHHHHHHHHHHHHHHH-------HH---------HHHHHHHH
Q 006762 258 LASKIDMKNEDLSELQCKFNETTMSLSRM-------LEEKDRLHYAFVEETRKM-------QR---------LARDNVRR 314 (632)
Q Consensus 258 L~n~I~~knk~l~elE~k~ne~t~sL~r~-------meEk~~lh~~yneE~rkm-------Q~---------~a~~~~~r 314 (632)
-..+|+.|.+.+.+||-+....+--.... .|++.+||-...+|+.+. .+ .+-+|.+.
T Consensus 920 sicl~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~ke 999 (1424)
T KOG4572|consen 920 SICLIEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKE 999 (1424)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34567778888888877766554443333 245556665555544332 12 23455566
Q ss_pred HHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHH
Q 006762 315 ILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDAD 357 (632)
Q Consensus 315 I~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~E 357 (632)
.--++..+|++||+++++|+.--.|++++++.--++..+--.+
T Consensus 1000 fE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e 1042 (1424)
T KOG4572|consen 1000 FEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIE 1042 (1424)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 6667788999999999999999999999888776665543333
No 55
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=84.79 E-value=1.1e+02 Score=37.72 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=22.4
Q ss_pred CCCCChhhHHHHhhcCCchhHHHHHHHHhhHHHHhhcCCCCc
Q 006762 504 GEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWH 545 (632)
Q Consensus 504 Geld~kpf~~ac~~k~~~~~~~~~a~~lcs~Wq~~l~~p~Wh 545 (632)
|-+++-.|+..- .+.+-..+..+-..|-++|-++.=+
T Consensus 615 ~~~~~p~~Llst-----~~~~s~n~~~~e~~~~~yla~~~d~ 651 (980)
T KOG0980|consen 615 RCLTSPDFLLST-----AENASVNATQFETSFNNYLADGDDA 651 (980)
T ss_pred CcCCCHHHHHHH-----HHHHHHHHHHHHHHHhhhcCCchhh
Confidence 455555566543 2355566666777788887776544
No 56
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=84.54 E-value=51 Score=33.73 Aligned_cols=134 Identities=19% Similarity=0.298 Sum_probs=81.0
Q ss_pred HhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006762 246 EDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCE 325 (632)
Q Consensus 246 E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~e 325 (632)
+..-..++.+..|...|...+++.+..|..|......|+ +.|..|++.++... +..-+.+.-...|+.
T Consensus 12 d~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR----------~ElI~ELkqsKkly-dnYYkL~~KY~~LK~- 79 (196)
T PF15272_consen 12 DQLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLR----------QELINELKQSKKLY-DNYYKLYSKYQELKK- 79 (196)
T ss_pred HHHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHH----------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-
Confidence 344577889999999999999999999999998888776 56777777666543 333445555555554
Q ss_pred HHHHHhhhHHHHHHHH----HHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006762 326 LETKKKKLDSWSKQLN----KREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKIL 401 (632)
Q Consensus 326 Le~k~~eL~~r~k~L~----k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil 401 (632)
+-.+...|..++..|+ .+.+..+...+.+.++.-. + .-....|..++++++-+...+|.
T Consensus 80 ~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~---------~--------~~r~~el~~~r~~e~~~YesRI~ 142 (196)
T PF15272_consen 80 SSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLS---------L--------ELRNKELQNERERERIAYESRIA 142 (196)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------H--------HHHHHHHHhHHHHHHHHHHHHHH
Confidence 2223333333333333 2233333333333333211 1 11123456666777778888888
Q ss_pred HHHHHhh
Q 006762 402 QLEKQLD 408 (632)
Q Consensus 402 ~LekqL~ 408 (632)
+||.||.
T Consensus 143 dLE~~L~ 149 (196)
T PF15272_consen 143 DLERQLN 149 (196)
T ss_pred HHHHHHH
Confidence 8888776
No 57
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=83.83 E-value=1.1e+02 Score=36.91 Aligned_cols=100 Identities=26% Similarity=0.273 Sum_probs=71.0
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006762 326 LETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEK 405 (632)
Q Consensus 326 Le~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~Lek 405 (632)
|-+.-..+..+...|++.....-....++..|.. .+..+....++---++.+.++.-+-+.+..++++-+++.
T Consensus 515 l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~-------~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~ 587 (698)
T KOG0978|consen 515 LKASVDKLELKIGKLEEQERGLTSNESKLIKELT-------TLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQE 587 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666655555555555555544 355666667777778888889888899999999888888
Q ss_pred HhhHH-----------hhhhhhHHHhhhhHHHHhhcCC
Q 006762 406 QLDAK-----------QKLEMEIEDLKGKLEVMKHLGD 432 (632)
Q Consensus 406 qL~~k-----------Q~LELEi~qLkG~L~VmKh~~~ 432 (632)
++.+. +.||-|+.+|+++|.-++.+..
T Consensus 588 ~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 588 QYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 77642 5688888999999998888754
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=83.11 E-value=99 Score=35.95 Aligned_cols=105 Identities=17% Similarity=0.367 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHhhhhhhHHHhhhhHH-HHhhcCC--CCcHHHHHHHHHHHHHH
Q 006762 380 ENVLRLVEEQKREKEEALSKILQLEKQ-------LDAKQKLEMEIEDLKGKLE-VMKHLGD--EDDAAVQKKMKEMNDEL 449 (632)
Q Consensus 380 e~vlkLve~hkrEke~~~~kil~Lekq-------L~~kQ~LELEi~qLkG~L~-VmKh~~~--~~d~~~~~k~~~l~~~l 449 (632)
..+...+...+.+...+...|..|.+. +..-+.++-+++.|...+. +...+.. ..-+++...++++.+.|
T Consensus 313 ~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~l 392 (569)
T PRK04778 313 DTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQL 392 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 334444555556666666677666554 6667888888888888888 4444433 33688889999999999
Q ss_pred HhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHH
Q 006762 450 ESKIDDLDEMESLNKTLIAKERQSNDELQEARREL 484 (632)
Q Consensus 450 ~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~l 484 (632)
.+-..+...+...-+.|-..|..+.+.|+..++.|
T Consensus 393 eeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 393 EEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888899988888888888888765
No 59
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=83.08 E-value=2.8 Score=32.95 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=39.6
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeec-cCCCCcceEEEEeCCChhchhhHHH
Q 006762 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFW-NEENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 123 gII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~-~~~Gh~G~aVV~F~~dw~Gf~nA~~ 185 (632)
+.|-|+|. ..+...|++ |+.|.+. .+.... ....+.|+++|.|.+ +..-..|+.
T Consensus 1 l~v~nlp~--------~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~-~~~a~~a~~ 57 (70)
T PF00076_consen 1 LYVGNLPP--------DVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFES-EEDAEKALE 57 (70)
T ss_dssp EEEESETT--------TSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESS-HHHHHHHHH
T ss_pred cEEcCCCC--------cCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcC-HHHHHHHHH
Confidence 35778865 457789999 9999987 444444 345688999999987 666666666
No 60
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=83.01 E-value=1.1e+02 Score=36.97 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhhH
Q 006762 394 EEALSKILQLEKQLDA 409 (632)
Q Consensus 394 e~~~~kil~LekqL~~ 409 (632)
.++..+|-+|+.+|..
T Consensus 548 ~~lE~E~~~lr~elk~ 563 (697)
T PF09726_consen 548 RQLESELKKLRRELKQ 563 (697)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334445555554443
No 61
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.04 E-value=1.2e+02 Score=35.98 Aligned_cols=34 Identities=38% Similarity=0.590 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHH
Q 006762 382 VLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLE 425 (632)
Q Consensus 382 vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~ 425 (632)
+.+-+.+|+.+-..++...- .|..||..|.|+|.
T Consensus 496 Iv~NI~KQk~eI~KIl~DTr----------~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 496 IVKNIRKQKEEIEKILSDTR----------ELQKEINSLTGKLD 529 (594)
T ss_pred HHHhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 44555566655555555444 45556677788775
No 62
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=81.96 E-value=1.2e+02 Score=36.05 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=18.8
Q ss_pred HHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhh
Q 006762 245 QEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNE 278 (632)
Q Consensus 245 ~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne 278 (632)
++..+.....|..|++....-..++++||.+..+
T Consensus 28 qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e 61 (617)
T PF15070_consen 28 QQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE 61 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555566666555544
No 63
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=81.37 E-value=29 Score=35.21 Aligned_cols=87 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006762 249 QSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELET 328 (632)
Q Consensus 249 rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~ 328 (632)
.++...+.++...+....+.+..|+..+......+.++-.||+.|...|+.=|...|+.+--...-.-..-..|...||.
T Consensus 82 ~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ 161 (201)
T PF13851_consen 82 EKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEK 161 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhHH
Q 006762 329 KKKKLDS 335 (632)
Q Consensus 329 k~~eL~~ 335 (632)
+--.|..
T Consensus 162 keaqL~e 168 (201)
T PF13851_consen 162 KEAQLNE 168 (201)
T ss_pred HHHHHHH
No 64
>PRK03918 chromosome segregation protein; Provisional
Probab=81.22 E-value=1.3e+02 Score=36.12 Aligned_cols=7 Identities=29% Similarity=0.311 Sum_probs=2.6
Q ss_pred HHHHHhc
Q 006762 85 KYLEVDL 91 (632)
Q Consensus 85 k~Le~dl 91 (632)
.++..-|
T Consensus 41 ~ai~~~l 47 (880)
T PRK03918 41 EAILVGL 47 (880)
T ss_pred HHHHHHh
Confidence 3333333
No 65
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=80.80 E-value=72 Score=32.81 Aligned_cols=129 Identities=13% Similarity=0.268 Sum_probs=62.2
Q ss_pred CCHHHHHHHhhhhHhHHHHHHHhHHHhh---hhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006762 238 RTVSDIVQEDAQSKIHVVAHLASKIDMK---NEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRR 314 (632)
Q Consensus 238 KTi~ei~~E~~rk~~~lv~~L~n~I~~k---nk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~r 314 (632)
+||+.++.+..+.....-..+...+..+ ..+|.-||..|+.......++ ......|...-..+...+.++..+
T Consensus 51 k~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~----K~vi~~~k~NEE~Lkk~~~ey~~~ 126 (207)
T PF05010_consen 51 KTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQ----KEVIEGYKKNEETLKKCIEEYEER 126 (207)
T ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3666666665544333233333333333 334444555554333222222 122333333333333444445555
Q ss_pred HHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHh
Q 006762 315 ILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQL 370 (632)
Q Consensus 315 I~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~l 370 (632)
|-.+.++...--..-...|+.=..+++........+-..|+...++..++..||.-
T Consensus 127 l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~ 182 (207)
T PF05010_consen 127 LKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEE 182 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444443333333345566666677777777777777777666666555555543
No 66
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=80.76 E-value=1.2e+02 Score=36.74 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=61.0
Q ss_pred ecccCCCCCC-CChh-hhhhhccCCCCHHHHHHHh---hhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH
Q 006762 215 FARADDNTSE-GPIG-EYLRQEGKLRTVSDIVQED---AQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE 289 (632)
Q Consensus 215 vAradDy~~~-g~iG-~~LrK~gdLKTi~ei~~E~---~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE 289 (632)
+|+..|.+-. ..+| .||-..++=.|+.+++.+- ....+..|--+-++.-.-+..|...|.+...+-. ...+.+
T Consensus 62 ~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r--ae~lpe 139 (916)
T KOG0249|consen 62 MAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR--AETLPE 139 (916)
T ss_pred HhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh--hhhhhh
Confidence 5666676543 2233 4555556666666654322 2222333333334444455555555555443322 233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHH
Q 006762 290 KDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDS 335 (632)
Q Consensus 290 k~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~ 335 (632)
-+.-++.-+.+.. ++++|...|.+-.++|..+++..-.+|..
T Consensus 140 veael~qr~~al~----~aee~~~~~eer~~kl~~~~qe~naeL~r 181 (916)
T KOG0249|consen 140 VEAELAQRNAALT----KAEEHSGNIEERTRKLEEQLEELNAELQR 181 (916)
T ss_pred hHHHHHHHHHHHH----HHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455554 46777777888888888888777666643
No 67
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=80.56 E-value=73 Score=32.76 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=17.7
Q ss_pred hHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHH
Q 006762 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRML 287 (632)
Q Consensus 252 ~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~m 287 (632)
..-|+.|.+.|.-....|...+..+..++..|..+-
T Consensus 35 E~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e 70 (237)
T PF00261_consen 35 EAEVASLQRRIQLLEEELERAEERLEEATEKLEEAE 70 (237)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544444433
No 68
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=80.54 E-value=1.5e+02 Score=36.25 Aligned_cols=213 Identities=20% Similarity=0.327 Sum_probs=101.3
Q ss_pred CCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006762 236 KLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRI 315 (632)
Q Consensus 236 dLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI 315 (632)
|++.--++..+..+...+--+.|-..|+.....|..-+..++..+.++..+-+|+..+.-... +|+.|-...-..+..+
T Consensus 319 d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~-~l~d~~d~~e~ki~~L 397 (775)
T PF10174_consen 319 DMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIE-DLRDMLDKKERKINVL 397 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666666666667677777777777777766655433222 2444444444444444
Q ss_pred HHHHHHhhHHHHHHHhhhHHHHHHHHH--HHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHH-hhHHHHHHHHHHHHH
Q 006762 316 LEEQEKLSCELETKKKKLDSWSKQLNK--REALTERERQKLDADRQQNDLRNNSLQLASMEQKK-ADENVLRLVEEQKRE 392 (632)
Q Consensus 316 ~~e~ekl~~eLe~k~~eL~~r~k~L~k--~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~k-ade~vlkLve~hkrE 392 (632)
-...++|...|-.+-+.|+.-..-|.- -...++.-+..|++=......-.+.|. ++.. +.-.-..=.+.++++
T Consensus 398 q~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~----e~r~~~e~e~~Eele~~~~e 473 (775)
T PF10174_consen 398 QKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLE----EQRERAEKERQEELETYQKE 473 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 444444444443333332222211110 000001111111111000000011111 1110 111122234778889
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHH
Q 006762 393 KEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEME 460 (632)
Q Consensus 393 ke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e 460 (632)
-+.+-.++-.|++.|..++- .+..+++...-+-.=..--|++ |+.|...|+-+.++...|+
T Consensus 474 ~~~lk~~~~~LQ~eLsEk~~---~l~~~kee~s~l~s~~~K~~s~----i~~l~I~lEk~rek~~kl~ 534 (775)
T PF10174_consen 474 LKELKAKLESLQKELSEKEL---QLEDAKEEASKLASSQEKKDSE----IERLEIELEKKREKHEKLE 534 (775)
T ss_pred HHHHHHHHHHHhhhhHHHHH---HHHHhhhHHHHHhhccchhhhH----HHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999883 2234444433332211111333 5555555555555544433
No 69
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=79.91 E-value=1.3e+02 Score=35.25 Aligned_cols=134 Identities=22% Similarity=0.237 Sum_probs=74.6
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 006762 280 TMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQ 359 (632)
Q Consensus 280 t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~ 359 (632)
..+.+-++++-.-+.+.|..||+..+..++...- -+..+-.+.+|...+++|-+.- +.....|..|-......+=
T Consensus 203 ~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--~~~r~~F~~eL~~Ai~eiRaqy---e~~~~~nR~diE~~Y~~kI 277 (546)
T KOG0977|consen 203 QNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--ADNREYFKNELALAIREIRAQY---EAISRQNRKDIESWYKRKI 277 (546)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc--ccchHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHH
Confidence 3445556677777788888888888777665541 2333445567777777665432 2222333333333322211
Q ss_pred hhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHH
Q 006762 360 QNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVM 427 (632)
Q Consensus 360 kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~Vm 427 (632)
.+ -+.+-..+..++..+.|+|+++-.. --.+..++-+||.. -+.|+-.|+.|+-+|.=-
T Consensus 278 ~~--i~~~~~~~~~~~~~~rEEl~~~R~~----i~~Lr~klselE~~---n~~L~~~I~dL~~ql~e~ 336 (546)
T KOG0977|consen 278 QE--IRTSAERANVEQNYAREELRRIRSR----ISGLRAKLSELESR---NSALEKRIEDLEYQLDED 336 (546)
T ss_pred HH--HHhhhccccchhHHHHHHHHHHHhc----ccchhhhhcccccc---ChhHHHHHHHHHhhhhhh
Confidence 11 1223345666777777777665432 33455566666554 356778888887776533
No 70
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=79.51 E-value=1.1e+02 Score=34.12 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHH
Q 006762 304 MQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDA 356 (632)
Q Consensus 304 mQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~ 356 (632)
||+.|--.....-..|.||-..||+.+..--.-..+=+.+.+.-+-||..|++
T Consensus 101 mQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~Q 153 (561)
T KOG1103|consen 101 MQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQ 153 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHH
Confidence 34333333333333444444444443333333333344444444444444433
No 71
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=78.27 E-value=43 Score=40.54 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHH
Q 006762 312 VRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKR 391 (632)
Q Consensus 312 ~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkr 391 (632)
..+++.+-+..+.+++.+..+++....+++++...-+.++.+|++++++ ..+++.+.+-.++++-++
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~-------------~~~~~~~~a~~~l~~a~~ 584 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK-------------LLEEAEKEAQQAIKEAKK 584 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555544443 123345555667777777
Q ss_pred HHHHHHHHHHHH
Q 006762 392 EKEEALSKILQL 403 (632)
Q Consensus 392 Eke~~~~kil~L 403 (632)
|-+++++++-++
T Consensus 585 ~~~~~i~~lk~~ 596 (782)
T PRK00409 585 EADEIIKELRQL 596 (782)
T ss_pred HHHHHHHHHHHh
Confidence 777777777654
No 72
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=77.99 E-value=1e+02 Score=32.96 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhh
Q 006762 383 LRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKG 422 (632)
Q Consensus 383 lkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG 422 (632)
.-++++-..---.+..++.-||-+||.||-|=-++|+||.
T Consensus 132 i~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkd 171 (333)
T KOG1853|consen 132 IYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKD 171 (333)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445555555566778888999999999999888888874
No 73
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.76 E-value=2e+02 Score=36.23 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=69.9
Q ss_pred eeeeecccCCCCCCCChhhhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH-
Q 006762 211 IYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE- 289 (632)
Q Consensus 211 LYGWvAradDy~~~g~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE- 289 (632)
|=|=+-..--+=++|+.| ++ .|=+-+..+. .+.++|..-|.+... ....+..++.+.+-..+.|..++-+
T Consensus 629 ldGtl~~ksGlmsGG~s~---~~-wdek~~~~L~----~~k~rl~eel~ei~~-~~~e~~~v~~~i~~le~~~~~~~~~~ 699 (1141)
T KOG0018|consen 629 LDGTLIHKSGLMSGGSSG---AK-WDEKEVDQLK----EKKERLLEELKEIQK-RRKEVSSVESKIHGLEMRLKYSKLDL 699 (1141)
T ss_pred eeeeEEeccceecCCccC---CC-cCHHHHHHHH----HHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555566777888 34 3544444443 344555555655555 3337777777777666666655544
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHH
Q 006762 290 ---------KDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSW 336 (632)
Q Consensus 290 ---------k~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r 336 (632)
+++-++.++.+|...+-... .+.|.++.-+.-..+|+.+|++++.+
T Consensus 700 ~~~k~~l~~~~~El~~~~~~i~~~~p~i~-~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 700 EQLKRSLEQNELELQRTESEIDEFGPEIS-EIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666666665555555 66777777777777777777777654
No 74
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.71 E-value=1.1e+02 Score=33.20 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=12.0
Q ss_pred HhhhhhhHHHhhhhHHHHhhcC
Q 006762 410 KQKLEMEIEDLKGKLEVMKHLG 431 (632)
Q Consensus 410 kQ~LELEi~qLkG~L~VmKh~~ 431 (632)
+++++-+|+.+...++--++..
T Consensus 248 k~e~~~~I~~ae~~~~~~r~~t 269 (312)
T smart00787 248 KSELNTEIAEAEKKLEQCRGFT 269 (312)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC
Confidence 4455555555555555555544
No 75
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.35 E-value=2e+02 Score=35.88 Aligned_cols=202 Identities=17% Similarity=0.204 Sum_probs=93.8
Q ss_pred HHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-------
Q 006762 339 QLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQ------- 411 (632)
Q Consensus 339 ~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ------- 411 (632)
.|..+-|+--.|++|+..|.++...+++.| .+-.|.-+|+-+.+...|..|..|.|+-=
T Consensus 386 rLRDlsA~ek~d~qK~~kelE~k~sE~~eL--------------~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~ 451 (1243)
T KOG0971|consen 386 RLRDLSASEKQDHQKLQKELEKKNSELEEL--------------RRQKERLSRELDQAESTIADLKEQVDAALGAEEMVE 451 (1243)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Confidence 455566666778888888877755444433 23334555666666667777766666532
Q ss_pred -------hhhhhHHHhhhhHHHHhhcCC---C-------CcHHHHHHHHHH----HHHHHhHHhhHHHHHHhhHHHHH-H
Q 006762 412 -------KLEMEIEDLKGKLEVMKHLGD---E-------DDAAVQKKMKEM----NDELESKIDDLDEMESLNKTLIA-K 469 (632)
Q Consensus 412 -------~LELEi~qLkG~L~VmKh~~~---~-------~d~~~~~k~~~l----~~~l~ek~~el~~~e~~nq~L~~-k 469 (632)
.||--|.+|.....=|..|++ + -.-++.+.||-+ ++-.......++..=+..||++. +
T Consensus 452 qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfR 531 (1243)
T KOG0971|consen 452 QLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFR 531 (1243)
T ss_pred HHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 222233444433222222211 0 001112222222 22223344555555667777553 2
Q ss_pred H--hhccHHHHHHHHHHHHhhhhccCCcccccccccCCCCChhhHHHHhhcCCch-hHHHHHHHHhhHHHHhhcCCCCcc
Q 006762 470 E--RQSNDELQEARRELIQGLSDLIGARTNIGVKRLGEIDPKPFQDACKNKFPLE-EAQVEASTLCSLWQENLKATEWHP 546 (632)
Q Consensus 470 e--r~sndELq~aRk~lI~~l~~~~~~~~~IgiKrmGeld~kpf~~ac~~k~~~~-~~~~~a~~lcs~Wq~~l~~p~WhP 546 (632)
| +.-||.||+-+.+-...-.+ ....|||+ --..|-+--..+- +-|... |.++++.++---=++-=-=..+-|
T Consensus 532 elva~Lqdqlqe~~dq~~Sseee---s~q~~s~~-~et~dyk~~fa~s-kayaraie~QlrqiEv~~a~rh~~~l~AFmP 606 (1243)
T KOG0971|consen 532 ELVAHLQDQLQELTDQQESSEEE---SQQPPSVD-PETFDYKIKFAES-KAYARAIEMQLRQIEVAQANRHMSLLTAFMP 606 (1243)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHH---hcCCCCCc-hhhhHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3 34567777776654433222 24467777 2223322211111 113221 455555555433222111123444
Q ss_pred eEEEEecCccccc
Q 006762 547 FKIIHVEGTPKEI 559 (632)
Q Consensus 547 Fk~v~v~g~~kei 559 (632)
=-..-++|.+--|
T Consensus 607 dsFlrrGGdhDsv 619 (1243)
T KOG0971|consen 607 DSFLRRGGDHDSV 619 (1243)
T ss_pred HhhccCCCCccee
Confidence 4445668876433
No 76
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=77.30 E-value=98 Score=37.06 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=19.9
Q ss_pred HHhhHHhhhhhhHHHhhhhHHHHhhc
Q 006762 405 KQLDAKQKLEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 405 kqL~~kQ~LELEi~qLkG~L~VmKh~ 430 (632)
++..+..+|--+|++|+|...|-...
T Consensus 297 ~e~~~r~kL~N~i~eLkGnIRV~CRv 322 (670)
T KOG0239|consen 297 KEKEERRKLHNEILELKGNIRVFCRV 322 (670)
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEe
Confidence 33455567888899999999998775
No 77
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=77.26 E-value=92 Score=32.00 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=10.0
Q ss_pred HHHHhhHHHHhhcCCCCcc
Q 006762 528 ASTLCSLWQENLKATEWHP 546 (632)
Q Consensus 528 a~~lcs~Wq~~l~~p~WhP 546 (632)
.+.|.+.=-.+|.=|==||
T Consensus 204 vahlv~lls~yL~v~Lpy~ 222 (302)
T PF10186_consen 204 VAHLVSLLSRYLGVPLPYP 222 (302)
T ss_pred HHHHHHHHHHHhCCCCCCC
Confidence 3445555556666554333
No 78
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=76.63 E-value=2.4e+02 Score=36.41 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=44.6
Q ss_pred HHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhh
Q 006762 350 ERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKH 429 (632)
Q Consensus 350 er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh 429 (632)
+++++..+..+-...-..+++...++++.-.+...|-.. +.....+++.+|...|.||-+|..|...+.-...
T Consensus 827 Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e-------~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s 899 (1294)
T KOG0962|consen 827 EKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNE-------LKEEKQKIERSLARLQQLEEDIEELSEEITRLDS 899 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444444444445555666777777776655555444443 3445566677777788888888877766654433
No 79
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=76.59 E-value=5.8 Score=31.85 Aligned_cols=57 Identities=23% Similarity=0.268 Sum_probs=40.3
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCC-ceeeeeccCCC-CcceEEEEeCCChhchhhHHHHHh
Q 006762 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP-VEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDFEK 188 (632)
Q Consensus 123 gII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p-~kv~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~lek 188 (632)
+.|-|+|. +.+...|.+ |+.|.+ .++....++.| .+|+|.|.|. +-.....|+.+.+
T Consensus 1 v~i~nlp~--------~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~-~~~~a~~al~~~~ 60 (70)
T PF14259_consen 1 VYISNLPP--------STTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFS-SEEDAKRALELLN 60 (70)
T ss_dssp EEEESSTT--------T--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEES-SHHHHHHHHHHHT
T ss_pred CEEeCCCC--------CCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeC-CHHHHHHHHHHCC
Confidence 35778875 346788899 988874 56777777654 4799999996 6667777777754
No 80
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.11 E-value=1.7e+02 Score=34.48 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=42.6
Q ss_pred ChhhhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhh
Q 006762 226 PIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNET 279 (632)
Q Consensus 226 ~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~ 279 (632)
+.+.|++---+ ++++..|-..+-.++...++++|+...+...+|+.++++.
T Consensus 204 ~Y~~fl~g~d~---~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ 254 (581)
T KOG0995|consen 204 SYTSFLKGEDN---SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINER 254 (581)
T ss_pred HHHHHhccCcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666665433 7889999999999999999999999999999999999854
No 81
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=75.68 E-value=1.1e+02 Score=32.19 Aligned_cols=73 Identities=29% Similarity=0.424 Sum_probs=38.9
Q ss_pred HhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHhhhhhhHHHhhh
Q 006762 344 EALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQL-DAKQKLEMEIEDLKG 422 (632)
Q Consensus 344 ~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL-~~kQ~LELEi~qLkG 422 (632)
.+.+..+...|..|+..-..+..+| +- .=.+++...++-..+.+.+..+|..+|+.+ +.++.++.++..+..
T Consensus 84 ~v~~~~e~~aL~~E~~~ak~r~~~l-----e~--el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 84 AVKDERELRALNIEIQIAKERINSL-----ED--ELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666655432222222 21 112344455555566666777777777776 345666666665554
Q ss_pred h
Q 006762 423 K 423 (632)
Q Consensus 423 ~ 423 (632)
+
T Consensus 157 ~ 157 (239)
T COG1579 157 E 157 (239)
T ss_pred H
Confidence 3
No 82
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=74.93 E-value=2.1e+02 Score=34.99 Aligned_cols=91 Identities=21% Similarity=0.267 Sum_probs=64.0
Q ss_pred hhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006762 249 QSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELET 328 (632)
Q Consensus 249 rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~ 328 (632)
.|...=|..|+.+++.--..--.+|.+..-.---|..-|. +|+.+..|--++|| +-+-++-.+.++.+.+||.
T Consensus 20 ekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~---qlr~~ree~eq~i~----~~~~~~s~e~e~~~~~le~ 92 (769)
T PF05911_consen 20 EKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMR---QLRQVREEQEQKIH----EAVAKKSKEWEKIKSELEA 92 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHH---HHHHhhHHHHHHHH----HHHHHHhHHHHHHHHHHHH
Confidence 5788889999999998887777777777766666666663 44444444444444 4455666788999999999
Q ss_pred HHhhhHHHHHHHHHHHhhhHH
Q 006762 329 KKKKLDSWSKQLNKREALTER 349 (632)
Q Consensus 329 k~~eL~~r~k~L~k~~~~~~~ 349 (632)
+.-++. ++|.+..+.|..
T Consensus 93 ~l~e~~---~~l~~~~~e~~~ 110 (769)
T PF05911_consen 93 KLAELS---KRLAESAAENSA 110 (769)
T ss_pred HHHHHH---HHHHHHHhhhHH
Confidence 888874 467777776664
No 83
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=74.13 E-value=1.2e+02 Score=31.85 Aligned_cols=64 Identities=22% Similarity=0.401 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhH----HhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHH
Q 006762 389 QKREKEEALSKILQLEKQLDA----KQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEM 459 (632)
Q Consensus 389 hkrEke~~~~kil~LekqL~~----kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~ 459 (632)
.+.|--.+...|..|+.+|+. +..||-.|..|...+.... ......|..+..+|.+-..+|...
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~-------~~~~~~i~~le~el~~l~~~~~~~ 281 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEER-------EEYQAEIAELEEELAELREEMARQ 281 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHH-------HHHHHhhhccchhHHHHHHHHHHH
Confidence 344445555555555555543 3345555555554444322 233444555555555555555433
No 84
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=73.99 E-value=51 Score=31.98 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=16.9
Q ss_pred HHHHHHhhhhhHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 006762 270 SELQCKFNETTMSLSRML-EEKDRLHYAFVEETRKMQRLARD 310 (632)
Q Consensus 270 ~elE~k~ne~t~sL~r~m-eEk~~lh~~yneE~rkmQ~~a~~ 310 (632)
+.-+..|++++.+|++|+ .-.+...-++-.-|+-+|..-+.
T Consensus 74 ~~n~~i~~~~s~~l~~~~~~~~e~~i~~~~~~I~~Lq~~~~~ 115 (146)
T PF08702_consen 74 KPNDNIYNQYSKSLRKMIIYILETKIINQPSNIRVLQNILRS 115 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 333344444444444444 33334444444444443333333
No 85
>PRK04863 mukB cell division protein MukB; Provisional
Probab=73.15 E-value=3.1e+02 Score=36.09 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHh
Q 006762 437 AVQKKMKEMNDELESKIDDLDEMESL 462 (632)
Q Consensus 437 ~~~~k~~~l~~~l~ek~~el~~~e~~ 462 (632)
....++.++..+|.+.+.+|..++.-
T Consensus 446 nF~aklee~e~qL~elE~kL~~lea~ 471 (1486)
T PRK04863 446 EFQAKEQEATEELLSLEQKLSVAQAA 471 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666655443
No 86
>PTZ00121 MAEBL; Provisional
Probab=72.73 E-value=3.1e+02 Score=36.03 Aligned_cols=72 Identities=22% Similarity=0.367 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHh
Q 006762 285 RMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQ 360 (632)
Q Consensus 285 r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~k 360 (632)
|..+|...|-+.-.+|.+..|..-.+.+.+++.+..+.+.+-.-+..+-..+..+|-+ .+.+|+++++.+++
T Consensus 1570 r~aeE~k~~a~rkaee~~~~~~~~~~~~~~~~~~~~~~kae~~kk~ee~~kk~E~~kk----~eeekKk~Eelkk~ 1641 (2084)
T PTZ00121 1570 KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK----AEEEKKKVEQLKKK 1641 (2084)
T ss_pred HHHhhhhhhhhhhHHHHHhHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 3334444556666777777777766777777777777665544443333333333332 34455555544433
No 87
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=71.46 E-value=71 Score=38.71 Aligned_cols=43 Identities=28% Similarity=0.355 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhH
Q 006762 313 RRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLD 355 (632)
Q Consensus 313 ~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~ 355 (632)
.+++.+-+..+.+++.++.+++....++++....-+.+..+|+
T Consensus 514 ~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 556 (771)
T TIGR01069 514 NVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELK 556 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444433333333333333
No 88
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=70.54 E-value=2.9e+02 Score=34.75 Aligned_cols=117 Identities=22% Similarity=0.290 Sum_probs=71.1
Q ss_pred eeecccCCCCCCCChhhhhhhccCCCC-HHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHH
Q 006762 213 GWFARADDNTSEGPIGEYLRQEGKLRT-VSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKD 291 (632)
Q Consensus 213 GWvAradDy~~~g~iG~~LrK~gdLKT-i~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~ 291 (632)
-++|+..++|+-..=|+...+.|-|.- |-|- ...-+..++| +..-...+.+|+.++++ +++++++.+
T Consensus 631 ~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~-------krsrLe~~k~-~~~~~~~~~~l~~~L~~----~r~~i~~~~ 698 (1200)
T KOG0964|consen 631 LRLAKKHELNCITLSGDQVSKKGVLTGGYEDQ-------KRSRLELLKN-VNESRSELKELQESLDE----VRNEIEDID 698 (1200)
T ss_pred HHHHHhcCCCeEEeccceecccCCccccchhh-------hhhHHHHHhh-hHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 367999999988778888888887752 2221 1222333332 33444556677777776 677788887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------hhhHHHHHHHHHHHh
Q 006762 292 RLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKK-------KKLDSWSKQLNKREA 345 (632)
Q Consensus 292 ~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~-------~eL~~r~k~L~k~~~ 345 (632)
+-+.+.+-+|++.+ -....+..+++.|+.++-... ..|+-..++|..+.+
T Consensus 699 ~~i~q~~~~~qk~e----~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~ 755 (1200)
T KOG0964|consen 699 QKIDQLNNNMQKVE----NDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKT 755 (1200)
T ss_pred HHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777665543 233445556666666665443 334555556655444
No 89
>smart00362 RRM_2 RNA recognition motif.
Probab=70.47 E-value=9.6 Score=29.02 Aligned_cols=46 Identities=26% Similarity=0.297 Sum_probs=32.3
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCCCcceEEEEeCCC
Q 006762 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 123 gII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~~Gh~G~aVV~F~~d 176 (632)
++|-|+|. +.+...|++ |..|.+.. +....++..++|++.|.|.+.
T Consensus 2 v~i~~l~~--------~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~ 49 (72)
T smart00362 2 LFVGNLPP--------DVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESE 49 (72)
T ss_pred EEEcCCCC--------cCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCH
Confidence 56777754 346678888 88898754 444444455789999999864
No 90
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.14 E-value=2.7e+02 Score=34.27 Aligned_cols=49 Identities=8% Similarity=0.088 Sum_probs=32.5
Q ss_pred ChhhhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHH
Q 006762 226 PIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQC 274 (632)
Q Consensus 226 ~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~ 274 (632)
.|.+.+..+++.--...++.+.-.+-+.++..|++.|....-.++.+..
T Consensus 630 ~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ 678 (970)
T KOG0946|consen 630 LIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQ 678 (970)
T ss_pred HHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4566667777777777777776677777777777777665555555433
No 91
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=69.75 E-value=1.4e+02 Score=30.76 Aligned_cols=84 Identities=19% Similarity=0.406 Sum_probs=56.4
Q ss_pred HhHHHHHHHhHHHhhhhhHHHHHHHhhh---hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006762 251 KIHVVAHLASKIDMKNEDLSELQCKFNE---TTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELE 327 (632)
Q Consensus 251 ~~~lv~~L~n~I~~knk~l~elE~k~ne---~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe 327 (632)
.+..+..+.+.+..+.....++-.+|.+ ....+.++|++-++.+...-+|-.+-...+...+++|+.+...+..+|.
T Consensus 7 ~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~ 86 (207)
T PF05010_consen 7 LDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLN 86 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHH
Confidence 4455555555555544555555555544 3556778888877777777777666677777888899999888888887
Q ss_pred HHHhhhH
Q 006762 328 TKKKKLD 334 (632)
Q Consensus 328 ~k~~eL~ 334 (632)
|.-...-
T Consensus 87 s~E~sfs 93 (207)
T PF05010_consen 87 SLEKSFS 93 (207)
T ss_pred HHHhhHH
Confidence 6554443
No 92
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=69.21 E-value=3.3e+02 Score=34.79 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=24.8
Q ss_pred ecCccccccCcccHHHHHHHHhhHHHHHHHHHHHHHhhhhcCCC
Q 006762 552 VEGTPKEIIDEEDEKIKSLKELGDEIYMAVTTALKELNEYNPSG 595 (632)
Q Consensus 552 v~g~~keii~edD~kL~~Lke~Geev~~aV~~Al~E~neyN~sg 595 (632)
..|...+.+..-.+.+..+...-+.+..+|-..-.-|+.|+.|+
T Consensus 893 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~l~~~~~~~ 936 (1201)
T PF12128_consen 893 AEGSVDERLRDLEDLLQRRKRLREELKKAVERFKGVLTKHSGSE 936 (1201)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34444556655555555555555556666665555555665544
No 93
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=68.48 E-value=1.4e+02 Score=30.11 Aligned_cols=39 Identities=23% Similarity=0.518 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHhhhH
Q 006762 296 AFVEETRKMQRLAR-----------DNVRRILEEQEKLSCELETKKKKLD 334 (632)
Q Consensus 296 ~yneE~rkmQ~~a~-----------~~~~rI~~e~ekl~~eLe~k~~eL~ 334 (632)
.|.+|+..+...+. .+++.+..||..|+.-|+.--..|+
T Consensus 45 ~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~~leEhq~ale 94 (181)
T PF05769_consen 45 QYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENRELRQSLEEHQSALE 94 (181)
T ss_pred HHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566555555544 3344555666666666655544444
No 94
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=67.90 E-value=3.3e+02 Score=34.31 Aligned_cols=93 Identities=15% Similarity=0.221 Sum_probs=58.4
Q ss_pred eCCChhchhhHHHHHhhhhhcCCChhhhhhhcCCCCCceeeeecccCCCCCCCChhhhhhhccCCCCHHHHHHHhhhhHh
Q 006762 173 FNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKI 252 (632)
Q Consensus 173 F~~dw~Gf~nA~~lek~Fe~~~~GRkdW~~~~~~~~~~LYGWvAradDy~~~g~iG~~LrK~gdLKTi~ei~~E~~rk~~ 252 (632)
|+.+..-=.+-..|-.+|..| -+.|.-|++. +-|++| ..|.+|+=++..+.--..
T Consensus 119 iN~~a~t~s~i~elv~~fNIQ--------------i~NLCqFLpQ-------DkV~EF----a~L~pi~LL~eTekAig~ 173 (1072)
T KOG0979|consen 119 INDSATTKSEIEELVAHFNIQ--------------IDNLCQFLPQ-------DKVKEF----ARLSPIELLVETEKAIGA 173 (1072)
T ss_pred eccchhhhHHHHHHHHHHhcc--------------cCchhhhccH-------HHHHHH----HcCChHHHHHHHHHhcCc
Confidence 344444445566677777754 1244444432 346676 678888887766655333
Q ss_pred -HHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHH
Q 006762 253 -HVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKD 291 (632)
Q Consensus 253 -~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~ 291 (632)
.|+.++ ..+.......+.||.+|+..+..|.++-.+.+
T Consensus 174 ~~ll~~h-~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~ 212 (1072)
T KOG0979|consen 174 EELLQYH-IELMDLREDEKSLEDKLTTKTEKLNRLEDEID 212 (1072)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 355544 36667777888888888888888887776544
No 95
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=66.53 E-value=1.6e+02 Score=30.27 Aligned_cols=46 Identities=17% Similarity=0.303 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHH
Q 006762 437 AVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARR 482 (632)
Q Consensus 437 ~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk 482 (632)
.+..+|..|...|.+-+...+..+.-++.|-..--.-.++|...+.
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888877777777777776554444555554443
No 96
>PHA02562 46 endonuclease subunit; Provisional
Probab=66.45 E-value=2.3e+02 Score=32.08 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=11.5
Q ss_pred HHhhhhHhHHHHHHHhHHHhhhhhHH
Q 006762 245 QEDAQSKIHVVAHLASKIDMKNEDLS 270 (632)
Q Consensus 245 ~E~~rk~~~lv~~L~n~I~~knk~l~ 270 (632)
.+..+...+.+..|..+|...+..+.
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 97
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.92 E-value=3.3e+02 Score=33.55 Aligned_cols=32 Identities=44% Similarity=0.683 Sum_probs=18.7
Q ss_pred HHHHHHHhhHHhhhhhhHHHhhhhHH-HHhhcC
Q 006762 400 ILQLEKQLDAKQKLEMEIEDLKGKLE-VMKHLG 431 (632)
Q Consensus 400 il~LekqL~~kQ~LELEi~qLkG~L~-VmKh~~ 431 (632)
+.+++..++.-+.++-++++++.+|+ +-+.++
T Consensus 680 ~~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~ 712 (908)
T COG0419 680 EEQLEEKLEELEQLEEELEQLREELEELLKKLG 712 (908)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666666666777777777763 344443
No 98
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.62 E-value=2.8e+02 Score=32.73 Aligned_cols=93 Identities=23% Similarity=0.255 Sum_probs=58.4
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH---HH---HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Q 006762 253 HVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE---KD---RLHYAFVEETRKM---QRLARDNVRRILEEQEKLS 323 (632)
Q Consensus 253 ~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE---k~---~lh~~yneE~rkm---Q~~a~~~~~rI~~e~ekl~ 323 (632)
+.-+.|.+-+.+-.-++.+|+.+.-...-.|.++=+| ++ +.+++-+.++++. |..+-..+.++..|.++|.
T Consensus 266 e~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~ 345 (581)
T KOG0995|consen 266 EKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLK 345 (581)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3444455555555556666666655555555554433 22 3345556666554 4446778888889999998
Q ss_pred HHHHHHHhhhHHHHHHHHHHHh
Q 006762 324 CELETKKKKLDSWSKQLNKREA 345 (632)
Q Consensus 324 ~eLe~k~~eL~~r~k~L~k~~~ 345 (632)
.+|..-..++|...+.+=++.-
T Consensus 346 r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 346 RELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 8888888888877777654443
No 99
>PRK12704 phosphodiesterase; Provisional
Probab=65.22 E-value=2.7e+02 Score=32.36 Aligned_cols=55 Identities=25% Similarity=0.350 Sum_probs=29.0
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh----hhhhHHHhhhhH
Q 006762 370 LASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQK----LEMEIEDLKGKL 424 (632)
Q Consensus 370 lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~----LELEi~qLkG~L 424 (632)
.|.+-+..|.+.+++-+++.-+.--..+-+-.+-|.+..+.++ |-.-||+.-+-.
T Consensus 147 ~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~a~qr~a~~~ 205 (520)
T PRK12704 147 ISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKEILAQAIQRCAADH 205 (520)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 4555566677888887777654333332222333333333333 556666665433
No 100
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=64.67 E-value=2.5e+02 Score=31.86 Aligned_cols=79 Identities=28% Similarity=0.272 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHH
Q 006762 390 KREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAK 469 (632)
Q Consensus 390 krEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~k 469 (632)
+||..++.+--.+|-.. |-.||.+|+|-|-- --|+..-.-..-+--=+|.-=|.=|+.++.++..-.+.|-
T Consensus 462 QrEnQELnaHNQELnnR------LaaEItrLRtlltg-dGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLk-- 532 (593)
T KOG4807|consen 462 QRENQELNAHNQELNNR------LAAEITRLRTLLTG-DGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLK-- 532 (593)
T ss_pred HHhhHHHHHHHHHHhhH------HHHHHHHHHHHhcc-CCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHH--
Confidence 35566665555555443 45689999987641 1111110111112234566667778888887776666665
Q ss_pred HhhccHHHHHHHH
Q 006762 470 ERQSNDELQEARR 482 (632)
Q Consensus 470 er~sndELq~aRk 482 (632)
||||-|-+
T Consensus 533 -----DELQtalr 540 (593)
T KOG4807|consen 533 -----DELQTALR 540 (593)
T ss_pred -----HHHHHHHh
Confidence 77776643
No 101
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=64.48 E-value=2.4e+02 Score=33.22 Aligned_cols=47 Identities=26% Similarity=0.307 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhHHHHHHH--HHHHhhhHHHHHhhHHHHH
Q 006762 311 NVRRILEEQEKLSCELETKKKKLDSWSKQL--NKREALTERERQKLDADRQ 359 (632)
Q Consensus 311 ~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L--~k~~~~~~~er~kL~~Ek~ 359 (632)
+++.|..+++. .+.....+++..+++.= .++.++-+..|+|.+.+++
T Consensus 198 el~~i~~~~q~--~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~ 246 (591)
T KOG2412|consen 198 ELQAIQREKQR--KEQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAE 246 (591)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77888877765 33334444443333222 2344444555555554443
No 102
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=64.47 E-value=1.7e+02 Score=35.51 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHh
Q 006762 305 QRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQ 360 (632)
Q Consensus 305 Q~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~k 360 (632)
-..|+......-.+-+++=..|+.++++++....++++.....+..++.|+++.++
T Consensus 499 i~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~ 554 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEE 554 (771)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556667777777777777777777777777777777777666553
No 103
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=62.73 E-value=3e+02 Score=32.06 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=9.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHH
Q 006762 280 TMSLSRMLEEKDRLHYAFVEET 301 (632)
Q Consensus 280 t~sL~r~meEk~~lh~~yneE~ 301 (632)
...+..+-++.+.|......|+
T Consensus 281 ~~~~~~i~~~Id~Lyd~lekE~ 302 (569)
T PRK04778 281 EEKNEEIQERIDQLYDILEREV 302 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 104
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=62.20 E-value=12 Score=37.16 Aligned_cols=28 Identities=36% Similarity=0.546 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhHHhhhhhhHHHhhh
Q 006762 395 EALSKILQLEKQLDAKQKLEMEIEDLKG 422 (632)
Q Consensus 395 ~~~~kil~LekqL~~kQ~LELEi~qLkG 422 (632)
.+..+..-||-+||+|..|.-++|+||.
T Consensus 11 ~AIERnalLE~ELdEKE~L~~~~QRLkD 38 (166)
T PF04880_consen 11 QAIERNALLESELDEKENLREEVQRLKD 38 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCH-----
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556688888999999999988874
No 105
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.10 E-value=3.8e+02 Score=33.05 Aligned_cols=14 Identities=36% Similarity=0.781 Sum_probs=7.8
Q ss_pred hhhhhHHHhhhhHH
Q 006762 412 KLEMEIEDLKGKLE 425 (632)
Q Consensus 412 ~LELEi~qLkG~L~ 425 (632)
.|.--++||.|+|+
T Consensus 448 tLn~k~qqls~kl~ 461 (1118)
T KOG1029|consen 448 TLNFKLQQLSGKLQ 461 (1118)
T ss_pred HHHHHHHHHhhhhh
Confidence 34555566666655
No 106
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.99 E-value=53 Score=31.91 Aligned_cols=78 Identities=21% Similarity=0.410 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhcc
Q 006762 395 EALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSN 474 (632)
Q Consensus 395 ~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sn 474 (632)
++-..|.+|..||. .|.-++..|+..|..+...+. .+++...|..|..++...++.|+.+.+ +...| +.
T Consensus 76 ~ld~ei~~L~~el~---~l~~~~k~l~~eL~~L~~~~t--~~el~~~i~~l~~e~~~l~~kL~~l~~-~~~~v-----s~ 144 (169)
T PF07106_consen 76 ELDAEIKELREELA---ELKKEVKSLEAELASLSSEPT--NEELREEIEELEEEIEELEEKLEKLRS-GSKPV-----SP 144 (169)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC-----CH
Confidence 34445777777664 577888889999999988876 567889999999999999999988777 44442 34
Q ss_pred HHHHHHHHH
Q 006762 475 DELQEARRE 483 (632)
Q Consensus 475 dELq~aRk~ 483 (632)
+|.+.+.+.
T Consensus 145 ee~~~~~~~ 153 (169)
T PF07106_consen 145 EEKEKLEKE 153 (169)
T ss_pred HHHHHHHHH
Confidence 455544443
No 107
>PRK00106 hypothetical protein; Provisional
Probab=61.91 E-value=3.2e+02 Score=32.07 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=28.3
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh----hhhhHHHhhhh
Q 006762 370 LASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQK----LEMEIEDLKGK 423 (632)
Q Consensus 370 lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~----LELEi~qLkG~ 423 (632)
.|.+-+..|.+.+++-+++.-+.--+.+-+-.+-|-+..+.++ +-.-||+.-+-
T Consensus 162 ~a~lt~~eak~~l~~~~~~~~~~~~~~~i~~~e~~a~~~a~~~a~~ii~~aiqr~a~~ 219 (535)
T PRK00106 162 VAALSQAEAREIILAETENKLTHEIATRIREAEREVKDRSDKMAKDLLAQAMQRLAGE 219 (535)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4555556677778877777654333333222233333344443 56666666543
No 108
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=61.78 E-value=3.7e+02 Score=32.82 Aligned_cols=59 Identities=24% Similarity=0.422 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhh---cC-CCCcHHHHHHHHHHHHHHHhHHhh
Q 006762 397 LSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKH---LG-DEDDAAVQKKMKEMNDELESKIDD 455 (632)
Q Consensus 397 ~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh---~~-~~~d~~~~~k~~~l~~~l~ek~~e 455 (632)
..||-.|++|..++=.--+-.-.||++.+-+|- .. ..-|.+.+.||+.|..+++.+..+
T Consensus 648 k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~ 710 (762)
T PLN03229 648 QEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAE 710 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 446666666665543333333445555555444 22 234677788888888877766654
No 109
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=61.61 E-value=1.6e+02 Score=31.62 Aligned_cols=120 Identities=16% Similarity=0.298 Sum_probs=80.4
Q ss_pred hhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006762 232 RQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDN 311 (632)
Q Consensus 232 rK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~ 311 (632)
.|.+|||.+..+..+-...--.|.+-|...++.+......+-.-. .+ .+-++..++--..+..--+..+..
T Consensus 114 ~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~-----e~----~~iE~~l~~ai~~~~~~~~~~~~~ 184 (267)
T PF10234_consen 114 SKIQDLKAARQLASEITQRGASLYDLLGKEVELREERQRALARPL-----EL----NEIEKALKEAIKAVQQQLQQTQQQ 184 (267)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCc-----CH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999998888888899999988877776666553111 11 112222222222222223334445
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHH---HHHhhHHHHHh
Q 006762 312 VRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTER---ERQKLDADRQQ 360 (632)
Q Consensus 312 ~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~---er~kL~~Ek~k 360 (632)
...+-.+...|...++-++.|||.-.|.|.-++.-.+. |..+|+.|.++
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 55666677788888999999999999999988877765 67777777664
No 110
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.14 E-value=3.1e+02 Score=31.68 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhHHHHH-----HHhhhHHHHHHHHHHHhhhHHHHHhhHHH
Q 006762 310 DNVRRILEEQEKLSCELET-----KKKKLDSWSKQLNKREALTERERQKLDAD 357 (632)
Q Consensus 310 ~~~~rI~~e~ekl~~eLe~-----k~~eL~~r~k~L~k~~~~~~~er~kL~~E 357 (632)
..+++-.+.+.+|+++|+. .|..+..|.+++..--.+-+.|-.|...|
T Consensus 359 eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~e 411 (521)
T KOG1937|consen 359 EEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEE 411 (521)
T ss_pred HHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3445555889999999986 47889999999987766666666666555
No 111
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=61.04 E-value=3.2e+02 Score=31.76 Aligned_cols=55 Identities=29% Similarity=0.409 Sum_probs=28.7
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh----hhhhHHHhhhhH
Q 006762 370 LASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQK----LEMEIEDLKGKL 424 (632)
Q Consensus 370 lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~----LELEi~qLkG~L 424 (632)
.|.+-+..|.+.+++-+++.-+.--+..-+-.+-|.+..+.++ |-.-||+.-+-.
T Consensus 141 ~a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~aiqr~a~~~ 199 (514)
T TIGR03319 141 ISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKEILATAIQRYAGDH 199 (514)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 4555555677788887777654333322222222333333333 666677666443
No 112
>PRK03918 chromosome segregation protein; Provisional
Probab=60.62 E-value=3.7e+02 Score=32.40 Aligned_cols=6 Identities=17% Similarity=0.778 Sum_probs=2.8
Q ss_pred HhhcCC
Q 006762 515 CKNKFP 520 (632)
Q Consensus 515 c~~k~~ 520 (632)
|++...
T Consensus 441 c~~~L~ 446 (880)
T PRK03918 441 CGRELT 446 (880)
T ss_pred CCCcCC
Confidence 444443
No 113
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=60.49 E-value=1.9e+02 Score=29.04 Aligned_cols=161 Identities=17% Similarity=0.288 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhH
Q 006762 290 KDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQ 369 (632)
Q Consensus 290 k~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~ 369 (632)
-..++..|-.+|..--..++..+.+++.....+..+++.-..++..|..+...--...+.+--+.--..+
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k---------- 93 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRK---------- 93 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----------
Confidence 3355555555555555556666666666666666666555555555554443221111111111000000
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-hh---hhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHH
Q 006762 370 LASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAK-QK---LEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEM 445 (632)
Q Consensus 370 lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~k-Q~---LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l 445 (632)
+..+. .-+.+...++.+...-+.+...|.+|+.+|..- ++ |-.--..-+-+..|-..+.+-+-.+....++.+
T Consensus 94 -~~~e~--~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~ 170 (221)
T PF04012_consen 94 -ADLEE--QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERM 170 (221)
T ss_pred -HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 00000 111222233444444444555555555544321 11 111222223334444555554445556667777
Q ss_pred HHHHHhHHhhHHHHHHhh
Q 006762 446 NDELESKIDDLDEMESLN 463 (632)
Q Consensus 446 ~~~l~ek~~el~~~e~~n 463 (632)
.+.+.+.+...+.+..+.
T Consensus 171 e~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 171 EEKIEEMEARAEASAELA 188 (221)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 777766666666555555
No 114
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=60.48 E-value=3.2e+02 Score=31.56 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=13.8
Q ss_pred HHHHHHHhhhHHHHHHHHHH
Q 006762 324 CELETKKKKLDSWSKQLNKR 343 (632)
Q Consensus 324 ~eLe~k~~eL~~r~k~L~k~ 343 (632)
.+|++++..++.+..+.+.+
T Consensus 347 sqlen~k~~~e~~~~e~~~l 366 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSL 366 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhh
Confidence 67777777777777666653
No 115
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=60.20 E-value=3.9e+02 Score=32.53 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=20.6
Q ss_pred HHHHhhhhHhHHHHHHHhHHHhhhhhHHHHH
Q 006762 243 IVQEDAQSKIHVVAHLASKIDMKNEDLSELQ 273 (632)
Q Consensus 243 i~~E~~rk~~~lv~~L~n~I~~knk~l~elE 273 (632)
.++-..-|+.+.|.-|.+.|+.-...|..+|
T Consensus 343 ~~q~eLdK~~~~i~~Ln~~leaReaqll~~e 373 (961)
T KOG4673|consen 343 DVQLELDKTKKEIKMLNNALEAREAQLLADE 373 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556667777777777777666665554
No 116
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=59.92 E-value=2e+02 Score=35.05 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=33.1
Q ss_pred HHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006762 245 QEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQ 319 (632)
Q Consensus 245 ~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ 319 (632)
.++....+.++..|..+...-.+...+++....+.....+++.++.+++-+ +-+++.+.|++.+++++.+-
T Consensus 512 ~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~----~~~~~~~~~~~~a~~~l~~a 582 (782)
T PRK00409 512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQE----EEDKLLEEAEKEAQQAIKEA 582 (782)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666555555555555544444444433333333333333 33334444444444444433
No 117
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=59.85 E-value=2e+02 Score=28.99 Aligned_cols=69 Identities=25% Similarity=0.399 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCC--CcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHH
Q 006762 397 LSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDE--DDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIA 468 (632)
Q Consensus 397 ~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~--~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ 468 (632)
..++-+|.++ .+.++.+|..|+..|+..+--..+ +-.....++.+|..++.....+|+.....+...|-
T Consensus 68 ~~~~~~l~~~---~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~ 138 (188)
T PF03962_consen 68 QNKLEKLQKE---IEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIE 138 (188)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3344444444 346777888888888888654332 23455567788888888888888766666666663
No 118
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=58.80 E-value=3.2 Score=49.14 Aligned_cols=70 Identities=23% Similarity=0.411 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHH
Q 006762 393 KEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKT 465 (632)
Q Consensus 393 ke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~ 465 (632)
.+.......+|++++..-+++..+++.++..|+-+. .+-+..+..+|++|...|..+..+|..+++....
T Consensus 532 ~~d~~~lk~~le~~~~~l~e~~~e~~~~~~~le~l~---~~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~k~ 601 (713)
T PF05622_consen 532 SEDSSELKQKLEEHLEKLRELKDELQKKREQLEELE---QELNQSLSQKIEELEEALQKKEEEMRAMEERYKK 601 (713)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHhHHHHHhHHHHHHH
Confidence 333333344555555555555555555555544322 1223344678999999999999999888764433
No 119
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=58.57 E-value=2e+02 Score=31.22 Aligned_cols=100 Identities=23% Similarity=0.328 Sum_probs=53.9
Q ss_pred hHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCC
Q 006762 354 LDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDE 433 (632)
Q Consensus 354 L~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~ 433 (632)
|..|+++.--+..+|..|-..|+...++...-.---|||..-+..---.||+ .+|+|.-+++-=.+++.++.--
T Consensus 30 LkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek---~rqKlshdlq~Ke~qv~~lEgQ--- 103 (307)
T PF10481_consen 30 LKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEK---TRQKLSHDLQVKESQVNFLEGQ--- 103 (307)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH---HHHHhhHHHhhhHHHHHHHHHH---
Confidence 3334444444444555555555555555444444455555555555555554 3455555544433333333211
Q ss_pred CcHHHHHHHHHHHHHHHhHHhhHHHHH
Q 006762 434 DDAAVQKKMKEMNDELESKIDDLDEME 460 (632)
Q Consensus 434 ~d~~~~~k~~~l~~~l~ek~~el~~~e 460 (632)
-...|+.|+.|..+|.-...+|+...
T Consensus 104 -l~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 104 -LNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12456788899999888888887544
No 120
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=57.89 E-value=3.4 Score=48.97 Aligned_cols=93 Identities=22% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCC------cHHHHHHHHH-------HHHHHHhHHhhHH
Q 006762 391 REKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDED------DAAVQKKMKE-------MNDELESKIDDLD 457 (632)
Q Consensus 391 rEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~------d~~~~~k~~~-------l~~~l~ek~~el~ 457 (632)
-|+..+-.|+..+|.-..+=..|++++++|...+.-...+..+. .+++...+.. |.+++.....++.
T Consensus 288 Ee~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~ 367 (722)
T PF05557_consen 288 EEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELR 367 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 46677777888787777777789999999999999888774442 2455555544 3445555556666
Q ss_pred HHHHhhHHHHHHHhhccHHHHHHHHH
Q 006762 458 EMESLNKTLIAKERQSNDELQEARRE 483 (632)
Q Consensus 458 ~~e~~nq~L~~ker~sndELq~aRk~ 483 (632)
.++..|+.|-..-....+++++++..
T Consensus 368 ~l~~~~~~Le~e~~~l~~~~~~l~~~ 393 (722)
T PF05557_consen 368 ELEEEIQELEQEKEQLLKEIEELEAS 393 (722)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677776665444444555555443
No 121
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=57.81 E-value=3.6e+02 Score=31.36 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=15.4
Q ss_pred HHHhhhhhcCCChhhhhhhcC
Q 006762 185 DFEKAFDADHQGKRHWIARKE 205 (632)
Q Consensus 185 ~lek~Fe~~~~GRkdW~~~~~ 205 (632)
.|-..|.+-++|-.++...+.
T Consensus 108 ~fit~YNAv~R~~~~~~~~~Y 128 (489)
T PF05262_consen 108 TFITIYNAVYRGDLDYFKKKY 128 (489)
T ss_pred HHHHHHHHHHcCCHHHHHHHh
Confidence 355678888888888887653
No 122
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=57.59 E-value=3.5e+02 Score=31.23 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhh
Q 006762 392 EKEEALSKILQLEKQLDAKQKLE 414 (632)
Q Consensus 392 Eke~~~~kil~LekqL~~kQ~LE 414 (632)
.-+++..+|-.||+-++.....+
T Consensus 379 ~l~~~~~~~~~le~~~~~~~~~~ 401 (582)
T PF09731_consen 379 KLAELNSRLKALEEALDARSEAE 401 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444333
No 123
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=56.88 E-value=2.5e+02 Score=29.24 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 006762 287 LEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETK 329 (632)
Q Consensus 287 meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k 329 (632)
+++-.+|++.|-++|..-...++..+-+++-.+..+..+|+.-
T Consensus 22 ~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~ 64 (225)
T COG1842 22 AEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEA 64 (225)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455688888888998888899999999988887665555443
No 124
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.53 E-value=4.4e+02 Score=31.99 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=36.2
Q ss_pred hhHHHHHHHhhhhhHHHHhHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHhhhH
Q 006762 267 EDLSELQCKFNETTMSLSRMLEEKDRL---HYAFVEETRKMQRLA---RDNVRRILEEQEKLSCELETKKKKLD 334 (632)
Q Consensus 267 k~l~elE~k~ne~t~sL~r~meEk~~l---h~~yneE~rkmQ~~a---~~~~~rI~~e~ekl~~eLe~k~~eL~ 334 (632)
+|+...+--..+....+.....++++. +....+++..++..| .+-..+|.+.+++|..-++.-++.+.
T Consensus 551 eYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 551 EYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555556555555555555432 344455566665555 44455555566665555555544443
No 125
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=56.43 E-value=4.7e+02 Score=32.31 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=6.1
Q ss_pred ceeeeecccC
Q 006762 210 RIYGWFARAD 219 (632)
Q Consensus 210 ~LYGWvArad 219 (632)
.+-||++|.-
T Consensus 822 ~~Rg~L~rkr 831 (1259)
T KOG0163|consen 822 IARGYLARKR 831 (1259)
T ss_pred HHHHHHHHhh
Confidence 4457777654
No 126
>PRK09039 hypothetical protein; Validated
Probab=56.33 E-value=3.1e+02 Score=30.11 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=32.0
Q ss_pred HhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHH
Q 006762 251 KIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFV 298 (632)
Q Consensus 251 ~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yn 298 (632)
.+..|+.|...+...+.....++.........|+-...++..|...|.
T Consensus 58 L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 58 LNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456677777777777777777777777777766666666655555
No 127
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=55.92 E-value=2.4e+02 Score=28.77 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhH----HHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHH
Q 006762 311 NVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTE----RERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLV 386 (632)
Q Consensus 311 ~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~----~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLv 386 (632)
+..++..........|+.-++..+..|.+++....++. .+-.|++. .+.-|..+-.+++.+....|
T Consensus 108 ~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~----------k~~k~~~~~~~~~~~Y~~~v 177 (236)
T cd07651 108 HMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNA----------KLNKAQSSINSSRRDYQNAV 177 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566777777888888888886655422 12233332 24456666677888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhhhh-HHHhhhhHH
Q 006762 387 EEQKREKEEALSKILQLEKQLDAKQKLEME-IEDLKGKLE 425 (632)
Q Consensus 387 e~hkrEke~~~~kil~LekqL~~kQ~LELE-i~qLkG~L~ 425 (632)
+...+=+......+ ..-++.=|.||-+ |+.|+..|.
T Consensus 178 ~~~~~~~~~~~~~~---~~~~~~~Q~lEe~Ri~~lk~~l~ 214 (236)
T cd07651 178 KALRELNEIWNREW---KAALDDFQDLEEERIQFLKSNCW 214 (236)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 87765444333333 2334444444433 555665444
No 128
>smart00030 CLb CLUSTERIN Beta chain.
Probab=55.61 E-value=52 Score=33.81 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 006762 378 ADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKL 413 (632)
Q Consensus 378 ade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~L 413 (632)
...++|+-+|+-|++||+|++...+.|++|.+.|.+
T Consensus 44 eh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~v 79 (206)
T smart00030 44 ERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGV 79 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999999888765
No 129
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=55.58 E-value=4.4e+02 Score=31.66 Aligned_cols=118 Identities=17% Similarity=0.254 Sum_probs=69.9
Q ss_pred HHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhh----------hHHHHhHHHHHH----HHHHHHHHHHHHHHHH-
Q 006762 243 IVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNET----------TMSLSRMLEEKD----RLHYAFVEETRKMQRL- 307 (632)
Q Consensus 243 i~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~----------t~sL~r~meEk~----~lh~~yneE~rkmQ~~- 307 (632)
....-...+...+....-.|.+.|.|...+-...+.- +.++..-+-+++ +.-..|.+.|..+-..
T Consensus 155 ~l~~te~~T~~A~sa~n~~I~alndh~~~~kes~d~s~~~~w~sv~~aL~~~~~~ad~da~AEk~aRn~~e~L~~i~n~g 234 (657)
T KOG1854|consen 155 LLQSTENITKLATSAKNVAIGALNDHVNILKESLDDSKEAGWNSVTTALKLPESAADKDATAEKSARNAQEKLVTIANLG 234 (657)
T ss_pred HHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 3444445666666677777888888888766666655 566665555433 4555566777766544
Q ss_pred -------HHHHHHHHHHHHHHhhHHHHHHHhhhH---HHHHHHHHHHhhhHHHHHhhHHHHHh
Q 006762 308 -------ARDNVRRILEEQEKLSCELETKKKKLD---SWSKQLNKREALTERERQKLDADRQQ 360 (632)
Q Consensus 308 -------a~~~~~rI~~e~ekl~~eLe~k~~eL~---~r~k~L~k~~~~~~~er~kL~~Ek~k 360 (632)
+-.++...-+--.+|..+|++-.+++- +-..=+.+.--.-+.-|..++.|++.
T Consensus 235 ~~~eTaq~nPlI~~t~~ta~kLs~qldnv~~ev~~~~se~~vv~ky~~~ve~ar~~F~~EL~s 297 (657)
T KOG1854|consen 235 ETGETAQANPLITATKDTAHKLSNQLDNVKREVSSSNSEAEVVGKYSELVEKARHQFEQELES 297 (657)
T ss_pred ccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233455555556677777777777632 22222334444445567777777764
No 130
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=55.45 E-value=5.4e+02 Score=32.66 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=17.6
Q ss_pred CCceeeeecccCCCCCCCChhhhhhhccCCCCHHHH
Q 006762 208 GLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDI 243 (632)
Q Consensus 208 ~~~LYGWvAradDy~~~g~iG~~LrK~gdLKTi~ei 243 (632)
..+|-|+-|+.|-..-..-|=.+-.+-.+|.+--++
T Consensus 284 eeQLq~lrarse~~tleseiiqlkqkl~dm~~erdt 319 (1195)
T KOG4643|consen 284 EEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDT 319 (1195)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhh
Confidence 347777878776633222233333333345444443
No 131
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=55.23 E-value=20 Score=37.82 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=37.7
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhch
Q 006762 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGF 180 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~Gf 180 (632)
.++|-|+|... +...|++ |+.|.++ .|+.++++ ....|+++|.|.+--.-.
T Consensus 271 ~lfV~NL~~~~--------~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 271 CIFVYNLSPDT--------DETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred EEEEeCCCCCC--------CHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHH
Confidence 37789998643 5677899 9999976 56666654 457899999998755443
No 132
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=54.78 E-value=2.4e+02 Score=28.36 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHh
Q 006762 313 RRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQ 360 (632)
Q Consensus 313 ~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~k 360 (632)
..+++..+.=..-|+-..++++.--.++...-+..-..++.|+.+...
T Consensus 15 ~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~ 62 (221)
T PF04012_consen 15 NELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDE 62 (221)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444444455555444433
No 133
>PRK09343 prefoldin subunit beta; Provisional
Probab=54.41 E-value=1.9e+02 Score=27.07 Aligned_cols=80 Identities=25% Similarity=0.442 Sum_probs=49.2
Q ss_pred hhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHH---------HHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHH
Q 006762 407 LDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKM---------KEMNDELESKIDDLDEMESLNKTLIAKERQSNDEL 477 (632)
Q Consensus 407 L~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~---------~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndEL 477 (632)
..++|.|+.++.+.+..+.=+.-++ +|..+++-+ +++..+|.++.+-+ +.--.+|-.++..-...+
T Consensus 27 ~~q~~~le~q~~e~~~~~~EL~~L~--~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i---e~~ik~lekq~~~l~~~l 101 (121)
T PRK09343 27 LQQKSQIDLELREINKALEELEKLP--DDTPIYKIVGNLLVKVDKTKVEKELKERKELL---ELRSRTLEKQEKKLREKL 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC--CcchhHHHhhHHHhhccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3467888888888888887777776 456666543 45555554444333 355555655555555666
Q ss_pred HHHHHHHHHhhhhc
Q 006762 478 QEARRELIQGLSDL 491 (632)
Q Consensus 478 q~aRk~lI~~l~~~ 491 (632)
.+.+..|-.-+...
T Consensus 102 ~e~q~~l~~ll~~~ 115 (121)
T PRK09343 102 KELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666665555543
No 134
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=54.35 E-value=4.8e+02 Score=31.72 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=13.2
Q ss_pred HHhhhHHHHHHHHHHHhhhHHHHHhhH
Q 006762 329 KKKKLDSWSKQLNKREALTERERQKLD 355 (632)
Q Consensus 329 k~~eL~~r~k~L~k~~~~~~~er~kL~ 355 (632)
.++||+.=..+|..+++.-+.-+.+++
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555554
No 135
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=53.90 E-value=3.7e+02 Score=30.47 Aligned_cols=109 Identities=19% Similarity=0.171 Sum_probs=84.7
Q ss_pred hhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006762 249 QSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELET 328 (632)
Q Consensus 249 rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~ 328 (632)
-|-..+...|.--|+..-+.-.+|+-..-+...+|+-.-|.+++-...-..---+.|--.-+..+..++|.-.||.+-++
T Consensus 281 tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~ 360 (442)
T PF06637_consen 281 TKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDS 360 (442)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777778888888888888888888887755555555588888888999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHhhhHHHHHhhHHH
Q 006762 329 KKKKLDSWSKQLNKREALTERERQKLDAD 357 (632)
Q Consensus 329 k~~eL~~r~k~L~k~~~~~~~er~kL~~E 357 (632)
-.++|+.+.++|+.+..+.+-.-.-|+-=
T Consensus 361 L~keLeekkreleql~~q~~v~~saLdtC 389 (442)
T PF06637_consen 361 LAKELEEKKRELEQLKMQLAVKTSALDTC 389 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999998777665554555443
No 136
>PRK12704 phosphodiesterase; Provisional
Probab=53.72 E-value=4.2e+02 Score=30.87 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=19.5
Q ss_pred hhcCCCCcceEEEEecCccccccCcccHHHHHHHHhhHHH
Q 006762 538 NLKATEWHPFKIIHVEGTPKEIIDEEDEKIKSLKELGDEI 577 (632)
Q Consensus 538 ~l~~p~WhPFk~v~v~g~~keii~edD~kL~~Lke~Geev 577 (632)
-+.|--=|||++-.+=-+...-|+ +.+++.|+++
T Consensus 273 l~~dg~i~P~~iee~~~~~~~~~~------~~~~~~ge~~ 306 (520)
T PRK12704 273 LVQDGRIHPARIEEMVEKARKEVD------EEIREEGEQA 306 (520)
T ss_pred HHhcCCcCCCCHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 356888899987544322222222 3345788876
No 137
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=53.43 E-value=3.6e+02 Score=30.01 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=26.8
Q ss_pred cCCCCCCcCccCchhHHhhhccCCCCCCCcChHHHHhHHHHHHHHHHhcC
Q 006762 43 PFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKANHLALAKYLEVDLA 92 (632)
Q Consensus 43 P~C~gkkk~~y~~~~LLqHA~gvG~sss~r~~k~ka~HraLak~Le~dl~ 92 (632)
-||+.. ++++|-.|-+.+- + +-...+.---..||.+|-...+
T Consensus 16 ~f~~~~-----~~kpl~r~yFa~~-~--~Np~eQF~~F~~L~~WL~~~~g 57 (359)
T PF10498_consen 16 DFCKKR-----KMKPLSRHYFAVP-S--TNPGEQFYYFTSLCAWLISKAG 57 (359)
T ss_pred HHhhhc-----CCCCCCHHHhcCC-C--CCchHHHHHHHHHHHHHHHhcC
Confidence 477622 3778888877631 1 2235566666788888888766
No 138
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=53.27 E-value=5.4e+02 Score=32.01 Aligned_cols=16 Identities=6% Similarity=0.001 Sum_probs=8.3
Q ss_pred HhhhhhcCCChhhhhh
Q 006762 187 EKAFDADHQGKRHWIA 202 (632)
Q Consensus 187 ek~Fe~~~~GRkdW~~ 202 (632)
++.+..-+.||.+-..
T Consensus 47 eniiqdlrserdalhe 62 (1265)
T KOG0976|consen 47 ENIIQDLRSERDALHE 62 (1265)
T ss_pred HHHHHHHHhhHHHHHH
Confidence 4445555556655543
No 139
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=52.34 E-value=8.8 Score=24.35 Aligned_cols=20 Identities=30% Similarity=0.692 Sum_probs=12.3
Q ss_pred eeccCCCCCCcCccCchhHHhhh
Q 006762 40 LRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 40 ~~CP~C~gkkk~~y~~~~LLqHA 62 (632)
|.||.|+-. .-...+|.+|-
T Consensus 1 ~~C~~C~~~---~~~~~~l~~H~ 20 (24)
T PF13894_consen 1 FQCPICGKS---FRSKSELRQHM 20 (24)
T ss_dssp EE-SSTS-E---ESSHHHHHHHH
T ss_pred CCCcCCCCc---CCcHHHHHHHH
Confidence 789999733 33566677774
No 140
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=51.50 E-value=2.6e+02 Score=27.82 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=66.8
Q ss_pred eecccCCCCCCCChh--hhhhhccCCCCHHHHHHHhhh--hHhHHHHHHHhHHHhhhh-hHHHHHHHhhhhhHHHHhHHH
Q 006762 214 WFARADDNTSEGPIG--EYLRQEGKLRTVSDIVQEDAQ--SKIHVVAHLASKIDMKNE-DLSELQCKFNETTMSLSRMLE 288 (632)
Q Consensus 214 WvAradDy~~~g~iG--~~LrK~gdLKTi~ei~~E~~r--k~~~lv~~L~n~I~~knk-~l~elE~k~ne~t~sL~r~me 288 (632)
|++.+++..+.+..+ .|||-.+-|-+...|..-+.+ +...+=..+..||+.+.. .-.+.+...-+--.--.|+-.
T Consensus 15 ~~~~~~~~~~~~~~~~~s~LR~~tallDpa~~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~err~~EE~~EE~Rl~r 94 (157)
T PF15236_consen 15 NLGKASRVTSMQSSSKTSFLRGMTALLDPAQIEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRRREEEEEEERLAR 94 (157)
T ss_pred hhcccccccccccccccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 566777777666555 899999888888887766554 334444455666665543 344555555566666677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006762 289 EKDRLHYAFVEETRKMQRLARD 310 (632)
Q Consensus 289 Ek~~lh~~yneE~rkmQ~~a~~ 310 (632)
++..|...|.+|..++.++--.
T Consensus 95 ere~~q~~~E~E~~~~~~KEe~ 116 (157)
T PF15236_consen 95 EREELQRQFEEEQRKQREKEEE 116 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999887765443
No 141
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=51.04 E-value=1.8e+02 Score=34.55 Aligned_cols=37 Identities=32% Similarity=0.522 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhc
Q 006762 391 REKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 391 rEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~ 430 (632)
+|-+....+|-.|++.|..+- .+|++|+++|.-.+.|
T Consensus 474 rei~~~~~~I~~L~~~L~e~~---~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 474 REIRARDRRIERLEKELEEKK---KRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 455566677777777776653 4666677666655543
No 142
>PLN03120 nucleic acid binding protein; Provisional
Probab=50.97 E-value=24 Score=37.45 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=41.8
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHHHHhh
Q 006762 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKA 189 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~lek~ 189 (632)
++.|-|++. ..+...|++ |+.|.++.-.-+..+..++|++.|.|.+. .+...|+.|...
T Consensus 6 tVfVgNLs~--------~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~-eaAe~AllLnG~ 65 (260)
T PLN03120 6 TVKVSNVSL--------KATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDP-QGAETALLLSGA 65 (260)
T ss_pred EEEEeCCCC--------CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcH-HHHHHHHHhcCC
Confidence 467888875 346788999 98887654444444445789999999654 777888866543
No 143
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=50.89 E-value=5e+02 Score=30.99 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=11.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006762 282 SLSRMLEEKDRLHYAFVEETRKMQRL 307 (632)
Q Consensus 282 sL~r~meEk~~lh~~yneE~rkmQ~~ 307 (632)
||..+--|||...+.++.|....|+.
T Consensus 5 ~l~qlq~Erd~ya~~lk~e~a~~qqr 30 (617)
T PF15070_consen 5 SLKQLQAERDQYAQQLKEESAQWQQR 30 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443433
No 144
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=49.83 E-value=4.8e+02 Score=32.08 Aligned_cols=94 Identities=26% Similarity=0.399 Sum_probs=64.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHh
Q 006762 376 KKADENVLRLVEEQKREKEEALSKILQLEKQL-DAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKID 454 (632)
Q Consensus 376 ~kade~vlkLve~hkrEke~~~~kil~LekqL-~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~ 454 (632)
|..+|+++|.+|.|+.|...+.+-|.+-+++| ..||.-++|+.++|--++ +..-+|+.++=+
T Consensus 454 q~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~-----------eal~~~k~~q~k------ 516 (861)
T PF15254_consen 454 QSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVE-----------EALVNVKSLQFK------ 516 (861)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhh------
Confidence 34678999999999999999999999988885 678888999888764332 222233333333
Q ss_pred hHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhh
Q 006762 455 DLDEMESLNKTLIAKERQSNDELQEARRELIQGL 488 (632)
Q Consensus 455 el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l 488 (632)
|+.-|.-|+.|-+--|+-..|+...| +|+.+|
T Consensus 517 -Le~sekEN~iL~itlrQrDaEi~RL~-eLtR~L 548 (861)
T PF15254_consen 517 -LEASEKENQILGITLRQRDAEIERLR-ELTRTL 548 (861)
T ss_pred -HHHHHhhhhHhhhHHHHHHHHHHHHH-HHHHHH
Confidence 34445567777777777666665443 455554
No 145
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=49.52 E-value=3e+02 Score=27.97 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=9.0
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHh
Q 006762 254 VVAHLASKIDMKNEDLSELQCKF 276 (632)
Q Consensus 254 lv~~L~n~I~~knk~l~elE~k~ 276 (632)
+++...+.|..-...+..+...+
T Consensus 62 ll~~h~eEvr~Lr~~LR~~q~~~ 84 (194)
T PF15619_consen 62 LLQRHNEEVRVLRERLRKSQEQE 84 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333333333333
No 146
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=48.89 E-value=3.3e+02 Score=28.33 Aligned_cols=47 Identities=9% Similarity=0.270 Sum_probs=34.3
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHH
Q 006762 254 VVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEE 300 (632)
Q Consensus 254 lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE 300 (632)
.++-+.+-...-++++.+++.-+.+....+-.+|.....++..|++-
T Consensus 18 ~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~ 64 (225)
T COG1842 18 LLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEA 64 (225)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455677888888888888888888888888887777654
No 147
>PLN03121 nucleic acid binding protein; Provisional
Probab=48.47 E-value=29 Score=36.51 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=44.8
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHHHHhh
Q 006762 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKA 189 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~lek~ 189 (632)
.|++.|-|++.. -+...|++ |+.|.++.-..+..+.+..|++.|.|.. -.+...|+.|...
T Consensus 5 g~TV~V~NLS~~--------tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d-~~aaetAllLnGa 66 (243)
T PLN03121 5 GYTAEVTNLSPK--------ATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKD-AYALETAVLLSGA 66 (243)
T ss_pred ceEEEEecCCCC--------CCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECC-HHHHHHHHhcCCC
Confidence 378999999653 36788999 9888886666666667777899999965 4445677765443
No 148
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.92 E-value=2.2e+02 Score=33.96 Aligned_cols=61 Identities=26% Similarity=0.436 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHH
Q 006762 381 NVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEM 459 (632)
Q Consensus 381 ~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~ 459 (632)
++...+++.+++.+.+.+++-++-..+..+-....||+++. .+|..|+.+|.++....+.|
T Consensus 440 ~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~------------------~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 440 ELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARD------------------RRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777777777777777777777766654 34556666666665555544
No 149
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=47.71 E-value=4.8e+02 Score=29.83 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=20.6
Q ss_pred hhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhh
Q 006762 413 LEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDD 455 (632)
Q Consensus 413 LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~e 455 (632)
|+-++...+-+|+.++.- ...+++.|..+.......-+.
T Consensus 215 l~~~l~~~q~~l~eL~~~----~~~L~~~Ias~e~~aA~~re~ 253 (420)
T COG4942 215 LNSELSADQKKLEELRAN----ESRLKNEIASAEAAAAKAREA 253 (420)
T ss_pred HHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555442 456677777777555433333
No 150
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=47.66 E-value=1.9e+02 Score=27.33 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=24.1
Q ss_pred hhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHH
Q 006762 412 KLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLI 467 (632)
Q Consensus 412 ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~ 467 (632)
.|+-+++.|+.+.+.+=-|=| +-.++.+|-..++.||..|....|
T Consensus 72 ~L~~el~~l~~ry~t~LellG-----------EK~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 72 ELEQELEELQQRYQTLLELLG-----------EKSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555554444433 334455555666666666666655
No 151
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=47.53 E-value=6.3e+02 Score=31.14 Aligned_cols=36 Identities=39% Similarity=0.521 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhh
Q 006762 387 EEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKG 422 (632)
Q Consensus 387 e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG 422 (632)
++-.++-+.+...+..++.++......++.+.+|.|
T Consensus 420 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 455 (908)
T COG0419 420 EELERELEELEEEIKKLEEQINQLESKELMIAELAG 455 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445555555555555555554443455555554
No 152
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.42 E-value=6.2e+02 Score=31.06 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHh
Q 006762 297 FVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREA 345 (632)
Q Consensus 297 yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~ 345 (632)
-.+|-|.-|+..-++.+.+-+-+.+...|..++++..|.-..-|++++.
T Consensus 803 QkeE~R~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQk 851 (1187)
T KOG0579|consen 803 QKEEARQQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQK 851 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 3566777777777777777777777777777777766655544444433
No 153
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=47.34 E-value=3.1e+02 Score=29.75 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=18.7
Q ss_pred cccccccccCCCCChhhHHHHhhcCCchhHHHHHHHHhhHHHHhhcCCCCcceEEEEec
Q 006762 495 RTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVE 553 (632)
Q Consensus 495 ~~~IgiKrmGeld~kpf~~ac~~k~~~~~~~~~a~~lcs~Wq~~l~~p~WhPFk~v~v~ 553 (632)
-+.|-==|+|-|...|--=. . -.-|-..++-|...=-..| +...+-|+.|-.|
T Consensus 150 fGTINGlRLGrl~~~~V~W~--E---INAA~Gq~~LLL~~la~~l-~~~f~~y~l~P~G 202 (314)
T PF04111_consen 150 FGTINGLRLGRLPNVPVEWN--E---INAAWGQTALLLQTLAKKL-NFKFQRYRLVPMG 202 (314)
T ss_dssp EEEETTEEE--BTTB---HH--H---HHHHHHHHHHHHHHHHHHC-T---SSEEEE--G
T ss_pred eeeECCeeeccCCCCCCChH--H---HHHHHHHHHHHHHHHHHHh-CCCcccceeEecC
Confidence 33344447887765542100 0 0122333444444444443 3556566666533
No 154
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=47.15 E-value=5.5e+02 Score=30.34 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhh----HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHH
Q 006762 390 KREKEEALSKILQLEKQLD----AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKK 441 (632)
Q Consensus 390 krEke~~~~kil~LekqL~----~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k 441 (632)
++|...+...|..+-++|| -++.++..++-|...|..|+.+...+-.+...+
T Consensus 175 k~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~ 230 (546)
T KOG0977|consen 175 KAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK 230 (546)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3444455555555555555 467899999999999999998766554444433
No 155
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=46.90 E-value=2.3e+02 Score=25.83 Aligned_cols=27 Identities=37% Similarity=0.494 Sum_probs=17.4
Q ss_pred HHHHhhHHhhhhhhHHHhhhhHHHHhh
Q 006762 403 LEKQLDAKQKLEMEIEDLKGKLEVMKH 429 (632)
Q Consensus 403 LekqL~~kQ~LELEi~qLkG~L~VmKh 429 (632)
.+.+-..++..+.||.+|+..|..|+.
T Consensus 69 a~~e~k~~~~k~~ei~~l~~~l~~l~~ 95 (126)
T PF13863_consen 69 AEEEKKKKEEKEAEIKKLKAELEELKS 95 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566667777777777776655
No 156
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=45.26 E-value=6.7e+02 Score=30.80 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcH--HHHHHHHHHHHHHHhHHhhHHHHHH
Q 006762 390 KREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDA--AVQKKMKEMNDELESKIDDLDEMES 461 (632)
Q Consensus 390 krEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~--~~~~k~~~l~~~l~ek~~el~~~e~ 461 (632)
+++.+.+..++.+ +++.|+.-+.+.+-+..+..-+-...-+ .+..+..+++.+|--+.+.|..+-+
T Consensus 580 ~~~i~~l~~el~e------q~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~~~~l~~~~e~l~~~~~ 647 (809)
T KOG0247|consen 580 EEEIEALDQELEE------QKMELQQKFSEKKKAMAKVRGILANTSPECSVAAKLLELQSKLWFKDEKLKHLTA 647 (809)
T ss_pred hhhhHHHHHHHHh------hhHHHHhhccchhHHHhhhccccCCCchhhhHHHHHHHHHHHhcccHHHHHHhhc
Confidence 4555555544443 3444555555555554444444222222 4555566666666666666654433
No 157
>PTZ00464 SNF-7-like protein; Provisional
Probab=45.23 E-value=3.7e+02 Score=27.76 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=14.4
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHh
Q 006762 326 LETKKKKLDSWSKQLNKREALTERERQK 353 (632)
Q Consensus 326 Le~k~~eL~~r~k~L~k~~~~~~~er~k 353 (632)
+......|+.|...|+++..+-+.|..+
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld~E~~~ 43 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKIDAELMK 43 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666666666665443333333
No 158
>PRK12705 hypothetical protein; Provisional
Probab=45.06 E-value=5.7e+02 Score=29.90 Aligned_cols=72 Identities=25% Similarity=0.425 Sum_probs=35.6
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHH-HHHHHHHH
Q 006762 326 LETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKR-EKEEALSK 399 (632)
Q Consensus 326 Le~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkr-Eke~~~~k 399 (632)
|+.+...|+.+..+|++.+..-......|+...+ .....--..|.+-+..|.+.+++-+++.-+ |.-.+.++
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~--~~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~ 165 (508)
T PRK12705 93 LDARAEKLDNLENQLEEREKALSARELELEELEK--QLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKK 165 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544433333333333211 111222234666666688888888886543 33333333
No 159
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=44.96 E-value=95 Score=29.76 Aligned_cols=86 Identities=29% Similarity=0.391 Sum_probs=52.0
Q ss_pred HHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006762 320 EKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSK 399 (632)
Q Consensus 320 ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~k 399 (632)
+++..+|.++...+|.-+.||+- +-+++..|.++.. .-+.+.+ -..=..|+...+.+
T Consensus 19 ~~l~~~l~~~i~~~d~el~QLef-------q~kr~~~e~~~~~----~~~~~~i------------~~q~~~e~~~r~e~ 75 (131)
T PF11068_consen 19 EELLQELQEQIQQLDQELQQLEF-------QGKRMIKEIKKQN----AQQIQSI------------QQQFEQEKQERLEQ 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTS----SHHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcc----hhhHHHH------------HHHHHHHHHHHHHH
Confidence 34566777777777777777763 3344444433221 1122222 22234567778888
Q ss_pred HHHHHHHhhHHhhhhhhHHHhhhhHHHHh
Q 006762 400 ILQLEKQLDAKQKLEMEIEDLKGKLEVMK 428 (632)
Q Consensus 400 il~LekqL~~kQ~LELEi~qLkG~L~VmK 428 (632)
+-+|..||.+=+.|++.-+=..|+++-+=
T Consensus 76 k~~l~~ql~qv~~L~lgsEv~qg~vE~~v 104 (131)
T PF11068_consen 76 KNQLLQQLEQVQKLELGSEVVQGQVESFV 104 (131)
T ss_dssp HHHHHHHHHHHHHS-TT-EEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEeeeeeEEEE
Confidence 99999999999999998776667665443
No 160
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=44.50 E-value=5.2e+02 Score=29.71 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=35.3
Q ss_pred HHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHH------HHHHH----------HHHHHHHHHHHHHHHHhhH
Q 006762 261 KIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEE------TRKMQ----------RLARDNVRRILEEQEKLSC 324 (632)
Q Consensus 261 ~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE------~rkmQ----------~~a~~~~~rI~~e~ekl~~ 324 (632)
.|+..|.-=++-|.-.|..--.++++-.|++-|...|.++ ++.+- ..-..|++.+-.|.++||.
T Consensus 188 ~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt 267 (552)
T KOG2129|consen 188 AVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRT 267 (552)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555566666666666666554 22222 1123455555566666666
Q ss_pred HHHH
Q 006762 325 ELET 328 (632)
Q Consensus 325 eLe~ 328 (632)
.|-+
T Consensus 268 ~l~~ 271 (552)
T KOG2129|consen 268 YLSR 271 (552)
T ss_pred HHHH
Confidence 6644
No 161
>PRK00106 hypothetical protein; Provisional
Probab=44.49 E-value=5.9e+02 Score=29.95 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=3.3
Q ss_pred hHHHHHHHH
Q 006762 333 LDSWSKQLN 341 (632)
Q Consensus 333 L~~r~k~L~ 341 (632)
|+.|..+|+
T Consensus 113 LekRee~Le 121 (535)
T PRK00106 113 LDRKDENLS 121 (535)
T ss_pred HHHHHHHHH
Confidence 333333333
No 162
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=43.88 E-value=4.5e+02 Score=28.41 Aligned_cols=34 Identities=24% Similarity=0.158 Sum_probs=15.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHH
Q 006762 324 CELETKKKKLDSWSKQLNKREALTERERQKLDAD 357 (632)
Q Consensus 324 ~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~E 357 (632)
..|+||..=.+=|.+-++-+...-+.....|..+
T Consensus 131 aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D 164 (325)
T PF08317_consen 131 ARLEAKKMWYEWRMQLLEGLKEGLEENLELLQED 164 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555445555555554444444444444444
No 163
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=42.34 E-value=3.3e+02 Score=26.43 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=44.5
Q ss_pred HHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHH---HHHHHHHHHHHHHHHHH
Q 006762 241 SDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLE---EKDRLHYAFVEETRKMQ 305 (632)
Q Consensus 241 ~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~me---Ek~~lh~~yneE~rkmQ 305 (632)
.+......+.-++-|..|.+.+..-...-.........+..+++.-.. .++..-.+|.+++++|.
T Consensus 24 ~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~ 91 (146)
T PF08702_consen 24 QDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI 91 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH
Confidence 344445566666677777777666666666666666666666666553 45578899999999998
No 164
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=42.26 E-value=3.1e+02 Score=26.05 Aligned_cols=99 Identities=22% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHH
Q 006762 296 AFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQ 375 (632)
Q Consensus 296 ~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ 375 (632)
.+.+.+..-....+-...+.-..+++|+.+++...+++..-......+..........+..+++. ++.+.-
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee---------~~klk~ 122 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEE---------LQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHH
Q 006762 376 KKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLE 425 (632)
Q Consensus 376 ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~ 425 (632)
.-++-..---+|-.++ |.||..|+.+|.
T Consensus 123 ~~~~~~tq~~~e~rkk----------------------e~E~~kLk~rL~ 150 (151)
T PF11559_consen 123 QLQQRKTQYEHELRKK----------------------EREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHH----------------------HHHHHHHHHHhc
No 165
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=42.16 E-value=4.3e+02 Score=27.67 Aligned_cols=66 Identities=24% Similarity=0.357 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 006762 294 HYAFVEETRKMQRLARDNVRRILEEQEKLS------CELETKKKKLDSWSKQLNKREALTERERQKLDADRQ 359 (632)
Q Consensus 294 h~~yneE~rkmQ~~a~~~~~rI~~e~ekl~------~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~ 359 (632)
+..|.++++..+..-.+...+|..=.++++ ..|+.+..+++.-...|......+..+|..|+.+..
T Consensus 14 L~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~ 85 (246)
T PF00769_consen 14 LRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR 85 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655555555433222222 234444444444444455444445555555554443
No 166
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=41.16 E-value=3.4e+02 Score=27.82 Aligned_cols=54 Identities=26% Similarity=0.274 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHH
Q 006762 304 MQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDAD 357 (632)
Q Consensus 304 mQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~E 357 (632)
||.....+..-.-.-|.+.-.+|+..++.=..=..+-+.+...-+.||.+|.+.
T Consensus 96 ~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~ 149 (192)
T PF09727_consen 96 MQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQ 149 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 333333333333334444444444443333333333344444444444444433
No 167
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=40.69 E-value=8.6e+02 Score=30.73 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=13.6
Q ss_pred HHHhhcCCeEee--cC-C---eeeccCCC
Q 006762 24 YEELRAGKYKVR--VN-G---TLRCPFCS 46 (632)
Q Consensus 24 y~~Lk~g~~kVk--~~-~---~~~CP~C~ 46 (632)
-..|.+|+.-|. +. + ++.|.||.
T Consensus 791 vd~l~~GYrhv~LRse~Nqpl~lp~Lfv~ 819 (1189)
T KOG1265|consen 791 VDGLNAGYRHVCLRSESNQPLTLPALFVY 819 (1189)
T ss_pred hhcccCcceeEEecCCCCCccccceeEEE
Confidence 356888986555 22 2 45566665
No 168
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.09 E-value=4e+02 Score=26.70 Aligned_cols=57 Identities=37% Similarity=0.444 Sum_probs=32.5
Q ss_pred HhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHH
Q 006762 410 KQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARREL 484 (632)
Q Consensus 410 kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~l 484 (632)
-+.|..|.+.|+-.+. .+..+++.|..+++....++..++.=-++|+ .=+..||+-.
T Consensus 99 ~~~~~~e~~~l~~e~~-----------~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~-------~Im~RARkl~ 155 (161)
T TIGR02894 99 DQALQKENERLKNQNE-----------SLQKRNEELEKELEKLRQRLSTIEEDYQTLI-------DIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 3444455555544443 3445566666666666666666666666666 3455566643
No 169
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=39.98 E-value=3.8e+02 Score=26.50 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=24.4
Q ss_pred HHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006762 342 KREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALS 398 (632)
Q Consensus 342 k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~ 398 (632)
++.+..+.+|..++.+... .++| -+.++.+.++.-++++++.+-
T Consensus 88 ~~~a~~~~~~~~~ea~L~~-----------~~~~--~~~~~~~~~~~~~~~~~~~~i 131 (155)
T PRK06569 88 SLESEFLIKKKNLEQDLKN-----------SINQ--NIEDINLAAKQFRTNKSEAII 131 (155)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHH--HHHHHHHHHHHHHHhHHHHHH
Confidence 4445555555556555442 3444 345566777766777665543
No 170
>PRK10884 SH3 domain-containing protein; Provisional
Probab=39.44 E-value=3.5e+02 Score=27.78 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhH
Q 006762 312 VRRILEEQEKLSCELETKKKKLD 334 (632)
Q Consensus 312 ~~rI~~e~ekl~~eLe~k~~eL~ 334 (632)
+..+-.+|.+|+.+|+.-..+++
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777666665444433
No 171
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.66 E-value=8.7e+02 Score=30.25 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHH
Q 006762 437 AVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEA 480 (632)
Q Consensus 437 ~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~a 480 (632)
+.+++..+....|.+-..++..++.--|||+.+--..++.+..+
T Consensus 796 El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m 839 (970)
T KOG0946|consen 796 ELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESM 839 (970)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 33444666666777777777777777778776666666665543
No 172
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=38.39 E-value=8.2e+02 Score=29.86 Aligned_cols=163 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHH
Q 006762 258 LASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWS 337 (632)
Q Consensus 258 L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~ 337 (632)
|..+.+.-..+|++| +|+.+|-..|+.+ .+|++++-..+-. |-+.|.....+-.-| .
T Consensus 61 lsqqaelis~qlqE~-----------rrle~e~~~lre~------sl~qkmrLe~qa~--Ele~l~~ae~agraE----a 117 (739)
T PF07111_consen 61 LSQQAELISRQLQEL-----------RRLEEEVRALRET------SLQQKMRLEAQAE--ELEALARAEKAGRAE----A 117 (739)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH------HHHHHhHHHHHHH--HHHHHHHHHHhhhhh----H
Q ss_pred HHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhH
Q 006762 338 KQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEI 417 (632)
Q Consensus 338 k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi 417 (632)
.+|.-.-|..+.-|++|++..+..-.....++-..+.. |-..|+++-..+-+++..||+.| +.||...
T Consensus 118 e~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~---------Lt~aHq~~l~sL~~k~~~Le~~L---~~le~~r 185 (739)
T PF07111_consen 118 EELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSS---------LTQAHQEALASLTSKAEELEKSL---ESLETRR 185 (739)
T ss_pred HHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q ss_pred HHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHH
Q 006762 418 EDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTL 466 (632)
Q Consensus 418 ~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L 466 (632)
.+....|. .+.+.-+.|.+.|.-.-++|+.--++...|
T Consensus 186 ~~e~~~La-----------~~q~e~d~L~~qLsk~~~~le~q~tlv~~L 223 (739)
T PF07111_consen 186 AGEAKELA-----------EAQREADLLREQLSKTQEELEAQVTLVEQL 223 (739)
T ss_pred HHHHHHHH-----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 173
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=38.35 E-value=16 Score=23.62 Aligned_cols=20 Identities=25% Similarity=0.650 Sum_probs=13.3
Q ss_pred eeccCCCCCCcCccCchhHHhhh
Q 006762 40 LRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 40 ~~CP~C~gkkk~~y~~~~LLqHA 62 (632)
|.||.|... +..-..|.+|-
T Consensus 1 y~C~~C~~~---f~~~~~l~~H~ 20 (23)
T PF00096_consen 1 YKCPICGKS---FSSKSNLKRHM 20 (23)
T ss_dssp EEETTTTEE---ESSHHHHHHHH
T ss_pred CCCCCCCCc---cCCHHHHHHHH
Confidence 789999733 33455666773
No 174
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=38.28 E-value=11 Score=44.87 Aligned_cols=105 Identities=29% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhH---hhHHHHHHhhHHHHHHHHHHHHHHH
Q 006762 318 EQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQ---LASMEQKKADENVLRLVEEQKREKE 394 (632)
Q Consensus 318 e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~---lA~~EQ~kade~vlkLve~hkrEke 394 (632)
+...|+.+|+ .|..++..++++++.-+.-|+||++=- -=..+...|. ..-+++...-|+-++-+..-+.+-+
T Consensus 292 ~a~~LrDElD----~lR~~a~r~~klE~~ve~YKkKLed~~-~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle 366 (713)
T PF05622_consen 292 EARALRDELD----ELREKADRADKLENEVEKYKKKLEDLE-DLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLE 366 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444443 445556667777777777777775320 0001111111 1112222233333344444445555
Q ss_pred HHHHHHHHHHHHhhHH----hhhhhhHHHhhhhHHHH
Q 006762 395 EALSKILQLEKQLDAK----QKLEMEIEDLKGKLEVM 427 (632)
Q Consensus 395 ~~~~kil~LekqL~~k----Q~LELEi~qLkG~L~Vm 427 (632)
.+-..|.+|+.+|+.. ..|+.|+.+|+.++..+
T Consensus 367 ~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l 403 (713)
T PF05622_consen 367 EYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEAL 403 (713)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777776554 34667777777766544
No 175
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=38.22 E-value=6.3e+02 Score=28.47 Aligned_cols=56 Identities=36% Similarity=0.490 Sum_probs=29.7
Q ss_pred hHhhHHHHHHhhHHHHHHHHHHHH----HHHHHHHH------HHHHHHHhhHHhhhhhhHHHhhhhHHH
Q 006762 368 LQLASMEQKKADENVLRLVEEQKR----EKEEALSK------ILQLEKQLDAKQKLEMEIEDLKGKLEV 426 (632)
Q Consensus 368 L~lA~~EQ~kade~vlkLve~hkr----Eke~~~~k------il~LekqL~~kQ~LELEi~qLkG~L~V 426 (632)
+..|..+-+||.+=+|+|-.+.-| +-+.+-.+ -.|.||++. .+..|.++|+..|+-
T Consensus 198 ~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~---EfdiEre~LRAel~r 263 (561)
T KOG1103|consen 198 LLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIE---EFDIEREFLRAELER 263 (561)
T ss_pred HHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 344666777888888887655422 22222222 223333333 355566677766653
No 176
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=37.70 E-value=7.3e+02 Score=29.07 Aligned_cols=142 Identities=19% Similarity=0.266 Sum_probs=79.0
Q ss_pred HHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhH---HHHH-HHH---HHHHHHHHHHHHHHHHHHHH
Q 006762 241 SDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRM---LEEK-DRL---HYAFVEETRKMQRLARDNVR 313 (632)
Q Consensus 241 ~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~---meEk-~~l---h~~yneE~rkmQ~~a~~~~~ 313 (632)
+..++|-.+--++++..+.++|+.+......|+.++.+. ++++.. +++| +.| ...|.-=+..|.++.++..-
T Consensus 252 ~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea-~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g 330 (622)
T COG5185 252 EPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEA-MKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPG 330 (622)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcch
Confidence 345566777889999999999999999999998888765 233322 2222 222 12233334555566655543
Q ss_pred HHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhh-------------HHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhH
Q 006762 314 RILEEQEKLSCELETKKKKLDSWSKQLNKREALT-------------ERERQKLDADRQQNDLRNNSLQLASMEQKKADE 380 (632)
Q Consensus 314 rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~-------------~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade 380 (632)
.+ ++|+.+++-+-.+|++-..+.+.+-++- .+||.+|..|..+-..+. +
T Consensus 331 ~l----~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~--------------~ 392 (622)
T COG5185 331 KL----EKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQS--------------D 392 (622)
T ss_pred HH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchH--------------H
Confidence 33 5666666666655555444444333322 135555555544433333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006762 381 NVLRLVEEQKREKEEALSKIL 401 (632)
Q Consensus 381 ~vlkLve~hkrEke~~~~kil 401 (632)
.+.+-|-++++|-+..-+.+.
T Consensus 393 ~L~k~V~~~~leaq~~~~sle 413 (622)
T COG5185 393 KLTKSVKSRKLEAQGIFKSLE 413 (622)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 445555666665554444333
No 177
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=37.08 E-value=7.1e+02 Score=28.73 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhhc
Q 006762 576 EIYMAVTTALKELNEYN 592 (632)
Q Consensus 576 ev~~aV~~Al~E~neyN 592 (632)
.|+.-|.+|+.-|.-|.
T Consensus 468 ~~~~r~~~a~~~iD~~~ 484 (511)
T PF09787_consen 468 GVARRVKRAASVIDSFS 484 (511)
T ss_pred hHHHHHHHHHHHHhHhh
Confidence 58899999999998874
No 178
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=37.06 E-value=70 Score=27.79 Aligned_cols=42 Identities=29% Similarity=0.490 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHh
Q 006762 304 MQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREA 345 (632)
Q Consensus 304 mQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~ 345 (632)
+++.+-.....++.+|-.|+.++++-.++|....+.|.+.+.
T Consensus 30 l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 30 LQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788899999999999999999999999999987655
No 179
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=37.01 E-value=66 Score=30.71 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=38.8
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCcee-eeeccC--CCCcceEEEEeCCChhchhhHHH
Q 006762 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEV-RIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~kv-~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~~ 185 (632)
.+.|-|++. ..+...|++ |..|.++.. ....+. .-+.|++.|.|.+. ..-..|+.
T Consensus 36 ~lfVgnL~~--------~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~-e~A~~Al~ 94 (144)
T PLN03134 36 KLFIGGLSW--------GTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE-GAATAAIS 94 (144)
T ss_pred EEEEeCCCC--------CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCH-HHHHHHHH
Confidence 456788875 347788999 999987544 444443 34789999999865 56666665
No 180
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=36.98 E-value=8.1e+02 Score=29.41 Aligned_cols=39 Identities=36% Similarity=0.559 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhHHH-------------hhhhHHHHhhcC
Q 006762 390 KREKEEALSKILQLEKQLDAKQKLEMEIED-------------LKGKLEVMKHLG 431 (632)
Q Consensus 390 krEke~~~~kil~LekqL~~kQ~LELEi~q-------------LkG~L~VmKh~~ 431 (632)
..+.+.--+.|-.||++|.++-. +|++ +|-.|.++|.|+
T Consensus 309 ~~e~e~~~~qI~~le~~l~~~~~---~leel~~kL~~~sDYeeIK~ELsiLk~ie 360 (629)
T KOG0963|consen 309 VEEREKHKAQISALEKELKAKIS---ELEELKEKLNSRSDYEEIKKELSILKAIE 360 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhccHHHHHHHHHHHHHhh
Confidence 34666677788888888887643 3344 445566666663
No 181
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=36.78 E-value=9.5e+02 Score=30.12 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=18.5
Q ss_pred HHHHHhhHHhhhhhhHHHhh-hhHHHHhh
Q 006762 402 QLEKQLDAKQKLEMEIEDLK-GKLEVMKH 429 (632)
Q Consensus 402 ~LekqL~~kQ~LELEi~qLk-G~L~VmKh 429 (632)
+||.-..++|.|+.+|-|.+ |.|+..+-
T Consensus 1017 e~eaiineiee~eaeIiQekE~el~e~ef 1045 (1424)
T KOG4572|consen 1017 ELEAIINEIEELEAEIIQEKEGELIEDEF 1045 (1424)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHh
Confidence 44555667888888888876 55555443
No 182
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=36.64 E-value=34 Score=23.73 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhH
Q 006762 391 REKEEALSKILQLEKQLDA 409 (632)
Q Consensus 391 rEke~~~~kil~LekqL~~ 409 (632)
+|.+.+.++|..||+||..
T Consensus 1 ~E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLSE 19 (23)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 3677888999999999974
No 183
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.06 E-value=5.4e+02 Score=27.07 Aligned_cols=142 Identities=23% Similarity=0.319 Sum_probs=80.3
Q ss_pred HHhHHHhhhhhHHHHHHHhhhhhHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhhhH
Q 006762 258 LASKIDMKNEDLSELQCKFNETTMSLSRML--EEKDRLHYAFVEETRKMQRLARDNVRRILEEQE-KLSCELETKKKKLD 334 (632)
Q Consensus 258 L~n~I~~knk~l~elE~k~ne~t~sL~r~m--eEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~e-kl~~eLe~k~~eL~ 334 (632)
|-..|+..-+.+.+-=..|+.+..++...- .+|+++-.--..||+|+|+ .|+.+.--+..++ |=+..|..-++-++
T Consensus 6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR-~RdQIK~W~~~~diKdk~~L~e~Rk~IE 84 (233)
T PF04065_consen 6 LQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQR-LRDQIKTWLSSNDIKDKKKLLENRKLIE 84 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHH-HHHHHHHHccCcccccHHHHHHHHHHHH
Confidence 345566666666666666666666665533 4688998889999999995 4666554443222 11223433344444
Q ss_pred HHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 006762 335 SWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLAS--MEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQK 412 (632)
Q Consensus 335 ~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~--~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~ 412 (632)
.+. ..++-++.+.+-.+--+..|..|+ -.+.++..++. .=+-+-|-+|..|.+ .
T Consensus 85 ~~M-----------ErFK~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~----------~wl~~~Id~L~~QiE---~ 140 (233)
T PF04065_consen 85 EQM-----------ERFKVVEKESKTKAFSKEGLMAASKLDPKEKEKEEAR----------DWLKDSIDELNRQIE---Q 140 (233)
T ss_pred HHH-----------HHHHHHHHHhcccccchhhhhcccccCcchHHHHHHH----------HHHHHHHHHHHHHHH---H
Confidence 333 123334555555555566666555 01111111111 123456778888876 6
Q ss_pred hhhhHHHhhhhH
Q 006762 413 LEMEIEDLKGKL 424 (632)
Q Consensus 413 LELEi~qLkG~L 424 (632)
+|.||+.|.++.
T Consensus 141 ~E~E~E~L~~~~ 152 (233)
T PF04065_consen 141 LEAEIESLSSQK 152 (233)
T ss_pred HHHHHHHHHHhh
Confidence 888888887653
No 184
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=35.54 E-value=43 Score=33.38 Aligned_cols=11 Identities=27% Similarity=0.667 Sum_probs=9.2
Q ss_pred HHHHHHHhhhh
Q 006762 269 LSELQCKFNET 279 (632)
Q Consensus 269 l~elE~k~ne~ 279 (632)
|+++|.|||..
T Consensus 2 LeD~EsklN~A 12 (166)
T PF04880_consen 2 LEDFESKLNQA 12 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67899999876
No 185
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=35.17 E-value=5.7e+02 Score=27.07 Aligned_cols=13 Identities=23% Similarity=0.156 Sum_probs=7.4
Q ss_pred HHhhHHHHhhcCC
Q 006762 530 TLCSLWQENLKAT 542 (632)
Q Consensus 530 ~lcs~Wq~~l~~p 542 (632)
+|.|..+..+++.
T Consensus 175 ell~~yeri~~~~ 187 (239)
T COG1579 175 ELLSEYERIRKNK 187 (239)
T ss_pred HHHHHHHHHHhcC
Confidence 4566666666543
No 186
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=35.06 E-value=7.1e+02 Score=29.80 Aligned_cols=59 Identities=8% Similarity=0.077 Sum_probs=45.2
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006762 253 HVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDN 311 (632)
Q Consensus 253 ~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~ 311 (632)
.+++.|..++......+.++...|....-.+..+-.+...|.....+|+.++.......
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~ 346 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQ 346 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777788888888888888888888888888888888776655433
No 187
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.03 E-value=6e+02 Score=27.33 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=31.5
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH-------HHHHHHHHHHHHHHHHHH
Q 006762 253 HVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE-------KDRLHYAFVEETRKMQRL 307 (632)
Q Consensus 253 ~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE-------k~~lh~~yneE~rkmQ~~ 307 (632)
.-|..|-++|+..+...+++..+.++....+.++-.+ .....+.|.+-+|.||.-
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~n 113 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVN 113 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555666666666666655555555554444433 234455666777777765
No 188
>PTZ00332 paraflagellar rod protein; Provisional
Probab=34.97 E-value=8.1e+02 Score=28.82 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=69.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHh
Q 006762 283 LSRMLEEKDRLHYAFVEETRKMQRLA-----------------RDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREA 345 (632)
Q Consensus 283 L~r~meEk~~lh~~yneE~rkmQ~~a-----------------~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~ 345 (632)
..-|.+-|..+.+++.+.+.++|..- +..+.+.|++|+.-..+-=+++.+|+.+-..|.
T Consensus 262 ~sa~~daK~R~~~~CE~Dl~~i~d~iq~~~~eDa~~~KRy~a~k~~Se~f~~~N~e~Qe~~wnrI~eLer~Lq~l~---- 337 (589)
T PTZ00332 262 TSQMKDAKRRLKQRCETDLKHIHDAIQKADLEDAEAMKRYATNKEKSERFIRENEDRQEEAWNKIQDLERQLQRLG---- 337 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34455667777888888777777542 345778888888877777777778777655555
Q ss_pred hhHHHHHhhHHHHHhhhhhhchhHhhHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhh
Q 006762 346 LTERERQKLDADRQQNDLRNNSLQLASMEQKK--ADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGK 423 (632)
Q Consensus 346 ~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~k--ade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~ 423 (632)
.+|.+.-+.+ |++...|.++ +-+..+..+..|+ |.|++-|.-.-+-
T Consensus 338 ---~eR~~eV~rR---------Ie~~~rEekRr~~yeqFl~~asQHk--------------------qrL~~tv~Ncd~a 385 (589)
T PTZ00332 338 ---TERFEEVKRR---------IEENDREEKRRVEYQQFLEVAGQHK--------------------KLLELTVYNCDLA 385 (589)
T ss_pred ---HHHHHHHHHH---------HHHHHHHHHhHhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHH
Confidence 2333221111 1122222222 3344555555555 6888888888888
Q ss_pred HHHHhhcC
Q 006762 424 LEVMKHLG 431 (632)
Q Consensus 424 L~VmKh~~ 431 (632)
+.+.-.|+
T Consensus 386 ~~~~~~le 393 (589)
T PTZ00332 386 LRCTGLVE 393 (589)
T ss_pred HHHHHHHH
Confidence 87776653
No 189
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=34.97 E-value=4.6e+02 Score=25.94 Aligned_cols=132 Identities=20% Similarity=0.262 Sum_probs=67.0
Q ss_pred HHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhH
Q 006762 255 VAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLD 334 (632)
Q Consensus 255 v~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~ 334 (632)
|..|--.|...=..|..+-+....-..-+.++-+++.+|...|..|-. ....+......+-+..+.=+.+|.++...|+
T Consensus 24 v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~-~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le 102 (158)
T PF09744_consen 24 VKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKE-LRKQAEEELLELEDQWRQERKDLQSQVEQLE 102 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443444555555555666677777888888888765322 2333344444444555555555666655555
Q ss_pred HHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006762 335 SWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQL 407 (632)
Q Consensus 335 ~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL 407 (632)
+..++|... .+|.+-+...++.+.++- -.++-.-|.|+.+-+.+-.-.++++=
T Consensus 103 ~e~r~L~~~-------------------~~~~~~q~~rlee~e~~l-~~e~~~l~er~~e~l~~~~e~ver~k 155 (158)
T PF09744_consen 103 EENRQLELK-------------------LKNLSDQSSRLEEREAEL-KKEYNRLHERERELLRKLKEHVERQK 155 (158)
T ss_pred HHHHHHHHH-------------------hhhhhhhccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555521 122222333333322220 12344556666666666665555543
No 190
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=34.91 E-value=5.2e+02 Score=26.59 Aligned_cols=64 Identities=22% Similarity=0.276 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhh
Q 006762 300 ETRKMQRLARDNVRRILEEQEKLSC---ELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLR 364 (632)
Q Consensus 300 E~rkmQ~~a~~~~~rI~~e~ekl~~---eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~ 364 (632)
.++..|+ |-.-..-+-++++.|+. .|++..+.|-..++++++=.-+-..+-..|+++..+.-..
T Consensus 51 q~~s~Qq-al~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e 117 (193)
T PF14662_consen 51 QLKSLQQ-ALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAE 117 (193)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 3444442 33333344555666553 4666667777777776655544445555555555544333
No 191
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=34.82 E-value=2e+02 Score=23.98 Aligned_cols=54 Identities=37% Similarity=0.471 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhHHhhhhhhHHHhhhhHHH---HhhcCCCCcHHHHHHHHHHHHHHHhHH
Q 006762 397 LSKILQLEKQLDAKQKLEMEIEDLKGKLEV---MKHLGDEDDAAVQKKMKEMNDELESKI 453 (632)
Q Consensus 397 ~~kil~LekqL~~kQ~LELEi~qLkG~L~V---mKh~~~~~d~~~~~k~~~l~~~l~ek~ 453 (632)
-+.|.+|+++|. +++-+|+.+.++|.- +.+-|.+--..-+.++.++..++.--.
T Consensus 3 ~~E~~rL~Kel~---kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~ 59 (66)
T PF10458_consen 3 EAEIERLEKELE---KLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLE 59 (66)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777776 788888899999863 444454433444555555555554333
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=34.47 E-value=1e+02 Score=32.35 Aligned_cols=44 Identities=18% Similarity=0.368 Sum_probs=30.9
Q ss_pred HHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHH
Q 006762 400 ILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLD 457 (632)
Q Consensus 400 il~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~ 457 (632)
+++|..||+ .|..||.+|+|+++++-|- |+.|.+.-.+-..+|+
T Consensus 56 ~~~l~~ql~---~lq~ev~~LrG~~E~~~~~-----------l~~~~~rq~~~y~dld 99 (263)
T PRK10803 56 LTQLQQQLS---DNQSDIDSLRGQIQENQYQ-----------LNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHH---HHHHHHHHHhhHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 567777776 4778999999999998882 4555555555455554
No 193
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=34.46 E-value=5.2e+02 Score=26.46 Aligned_cols=58 Identities=14% Similarity=0.259 Sum_probs=34.9
Q ss_pred hHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006762 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLAR 309 (632)
Q Consensus 252 ~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~ 309 (632)
..|=..+..+...-...-++|.+.|...+.-|...+-++.+....-+.++..|....+
T Consensus 21 ~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~ 78 (206)
T PF14988_consen 21 EKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRR 78 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344444444555555666677777777777776666666666666666665554443
No 194
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=34.24 E-value=9.5e+02 Score=29.37 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=19.7
Q ss_pred hHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhH
Q 006762 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRM 286 (632)
Q Consensus 252 ~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~ 286 (632)
.+.|+-|-.++..|...+++|-..+.++.-..+.+
T Consensus 239 Ekqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qL 273 (786)
T PF05483_consen 239 EKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQL 273 (786)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555555555554444433
No 195
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=34.22 E-value=8.5e+02 Score=28.78 Aligned_cols=29 Identities=38% Similarity=0.374 Sum_probs=13.9
Q ss_pred HHHHHHhhHHhh----hhhhHHHhhhhHHHHhh
Q 006762 401 LQLEKQLDAKQK----LEMEIEDLKGKLEVMKH 429 (632)
Q Consensus 401 l~LekqL~~kQ~----LELEi~qLkG~L~VmKh 429 (632)
-.|.-||-.+|+ +-.|.+.|..-|+.||-
T Consensus 236 skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~d 268 (596)
T KOG4360|consen 236 SKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKD 268 (596)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444443 33444555555565554
No 196
>PLN03188 kinesin-12 family protein; Provisional
Probab=34.16 E-value=1.2e+03 Score=30.50 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=22.9
Q ss_pred HhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHH
Q 006762 251 KIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYA 296 (632)
Q Consensus 251 ~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~ 296 (632)
...+...|.-.++...+...+|..-..-.-.--.||+|+--.|.+.
T Consensus 1077 ~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek 1122 (1320)
T PLN03188 1077 SRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEK 1122 (1320)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655444333333333444443333333
No 197
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=34.15 E-value=18 Score=29.19 Aligned_cols=11 Identities=45% Similarity=1.213 Sum_probs=7.8
Q ss_pred eeeccCCCCCCc
Q 006762 39 TLRCPFCSGKKK 50 (632)
Q Consensus 39 ~~~CP~C~gkkk 50 (632)
...|||| |.+.
T Consensus 3 LkPCPFC-G~~~ 13 (61)
T PF14354_consen 3 LKPCPFC-GSAD 13 (61)
T ss_pred CcCCCCC-CCcc
Confidence 3579999 6654
No 198
>PLN02678 seryl-tRNA synthetase
Probab=34.15 E-value=2.8e+02 Score=31.77 Aligned_cols=55 Identities=22% Similarity=0.396 Sum_probs=35.6
Q ss_pred CCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhhccCCccccc--------ccccC
Q 006762 433 EDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIG--------VKRLG 504 (632)
Q Consensus 433 ~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~~~~~~~~~Ig--------iKrmG 504 (632)
++-++++.++.+|.+++...+.++. ++++...++...|..++.....|| |++.|
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~~------------------~~~~~l~~~~~~iPNi~~~~VP~G~de~~n~~vr~~g 132 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEVQ------------------EAKAALDAKLKTIGNLVHDSVPVSNDEANNAVVRTWG 132 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCcCCCEEEEEEc
Confidence 4456777778888877777776663 566666677777777654333333 66667
Q ss_pred C
Q 006762 505 E 505 (632)
Q Consensus 505 e 505 (632)
.
T Consensus 133 ~ 133 (448)
T PLN02678 133 E 133 (448)
T ss_pred C
Confidence 4
No 199
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=34.06 E-value=28 Score=26.42 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=11.0
Q ss_pred Eee-cCCeeeccCCCC
Q 006762 33 KVR-VNGTLRCPFCSG 47 (632)
Q Consensus 33 kVk-~~~~~~CP~C~g 47 (632)
+|. .+.+|.||||..
T Consensus 17 ~~~~~~~~w~C~~C~~ 32 (40)
T PF04810_consen 17 QFDDGGKTWICNFCGT 32 (40)
T ss_dssp EEETTTTEEEETTT--
T ss_pred eEcCCCCEEECcCCCC
Confidence 566 678999999973
No 200
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=34.02 E-value=14 Score=45.14 Aligned_cols=78 Identities=28% Similarity=0.325 Sum_probs=0.0
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Q 006762 280 TMSLSRMLEEKDRLHYAFVEETRKMQRLARDN-------VRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQ 352 (632)
Q Consensus 280 t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~-------~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~ 352 (632)
..+|++.+++-..-|++--.+|++=+..+-.. .++.-..-+|-+..|+....+|......+.+--+.++.-++
T Consensus 104 l~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K 183 (859)
T PF01576_consen 104 LAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRK 183 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 34566666665555555555555444443332 33333334444444444444444444444444444444444
Q ss_pred hhHHH
Q 006762 353 KLDAD 357 (632)
Q Consensus 353 kL~~E 357 (632)
+|+..
T Consensus 184 ~lE~q 188 (859)
T PF01576_consen 184 QLEAQ 188 (859)
T ss_dssp -----
T ss_pred hHHHH
Confidence 45444
No 201
>PRK01156 chromosome segregation protein; Provisional
Probab=34.00 E-value=9.5e+02 Score=29.31 Aligned_cols=14 Identities=7% Similarity=-0.213 Sum_probs=5.3
Q ss_pred HHHHHhhhHHHHHH
Q 006762 326 LETKKKKLDSWSKQ 339 (632)
Q Consensus 326 Le~k~~eL~~r~k~ 339 (632)
|+++..+|+..-.+
T Consensus 261 le~~l~el~~~~~e 274 (895)
T PRK01156 261 AESDLSMELEKNNY 274 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 34433433333333
No 202
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=33.91 E-value=29 Score=26.85 Aligned_cols=17 Identities=24% Similarity=0.784 Sum_probs=11.0
Q ss_pred eEee-cCCeeeccCCCCC
Q 006762 32 YKVR-VNGTLRCPFCSGK 48 (632)
Q Consensus 32 ~kVk-~~~~~~CP~C~gk 48 (632)
+.+. ....++||+|.+.
T Consensus 13 ~~~~~~~~~~~Cp~CG~~ 30 (46)
T PRK00398 13 VELDEYGTGVRCPYCGYR 30 (46)
T ss_pred EEECCCCCceECCCCCCe
Confidence 3444 3347999999743
No 203
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=33.89 E-value=1.3e+02 Score=25.30 Aligned_cols=53 Identities=25% Similarity=0.444 Sum_probs=36.7
Q ss_pred HHHHHhhHHhhhhhhHHHhhhhHHHHhh-cCCCCcHHHHHHHHHHHHHHHhHHhhHHHH
Q 006762 402 QLEKQLDAKQKLEMEIEDLKGKLEVMKH-LGDEDDAAVQKKMKEMNDELESKIDDLDEM 459 (632)
Q Consensus 402 ~LekqL~~kQ~LELEi~qLkG~L~VmKh-~~~~~d~~~~~k~~~l~~~l~ek~~el~~~ 459 (632)
-|+-++.+||.+.-|+...+........ +. +.-++..+|..++.....+|+.+
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLq-----eaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQ-----EAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4778889999999999998866554443 32 34456667777777666666543
No 204
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=33.79 E-value=8.8e+02 Score=28.88 Aligned_cols=214 Identities=19% Similarity=0.281 Sum_probs=95.2
Q ss_pred hHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006762 250 SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFV--EETRKMQRLARDNVRRILEEQEKLSCELE 327 (632)
Q Consensus 250 k~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yn--eE~rkmQ~~a~~~~~rI~~e~ekl~~eLe 327 (632)
+..+-+..|..+|..-...+.+++........++..+.++...+...-. ++--++...+.+ ++.+-+.--..|+
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~----lL~d~e~ni~kL~ 400 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVE----LLPDAEENIAKLQ 400 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCcHHHHHHHH
Confidence 3445555666666666666666666666666666666655443322111 111112222221 2222211112222
Q ss_pred HHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006762 328 TKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQL 407 (632)
Q Consensus 328 ~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL 407 (632)
.. +++....|..++.+=+.-|.-|.++.+......+....-+. +. -.+-+.++.+|.+++.++
T Consensus 401 ~~---v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~----------~~----~~~ik~~r~~~k~~~~e~ 463 (594)
T PF05667_consen 401 AL---VEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESK----------QK----LQEIKELREEIKEIEEEI 463 (594)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHH----------HH----HHHHHHHHHHHHHHHHHH
Confidence 22 23344445555566666666666665543222111111110 00 122233344444444444
Q ss_pred hHHhh----hhhhHHHhh----------hhHHHHhhcC--CCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHh
Q 006762 408 DAKQK----LEMEIEDLK----------GKLEVMKHLG--DEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKER 471 (632)
Q Consensus 408 ~~kQ~----LELEi~qLk----------G~L~VmKh~~--~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker 471 (632)
..|.. |+-+.+.|. .-|++.|-+. .+|-..|..-+..|+.++..-.+-|+.--...-.||-+.=
T Consensus 464 ~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdA 543 (594)
T PF05667_consen 464 RQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDA 543 (594)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33332 333344433 2344444431 1222333333456666666666666666666667777776
Q ss_pred hccHHHHHHHHHH
Q 006762 472 QSNDELQEARREL 484 (632)
Q Consensus 472 ~sndELq~aRk~l 484 (632)
+.++--+.|=|-|
T Consensus 544 KkDe~~rkaYK~L 556 (594)
T PF05667_consen 544 KKDEAARKAYKLL 556 (594)
T ss_pred hcCHHHHHHHHHH
Confidence 6555444444433
No 205
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=33.76 E-value=2.3e+02 Score=28.43 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=28.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006762 376 KKADENVLRLVEEQKREKEEALSKILQLEKQLDA 409 (632)
Q Consensus 376 ~kade~vlkLve~hkrEke~~~~kil~LekqL~~ 409 (632)
++||+=|.-=+=.|.||.|++...|..||..+..
T Consensus 110 ~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 110 QKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4677777766778999999999999999988765
No 206
>PRK14143 heat shock protein GrpE; Provisional
Probab=33.75 E-value=4e+02 Score=28.05 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhhccCCcccccccccCCCCChhh
Q 006762 478 QEARRELIQGLSDLIGARTNIGVKRLGEIDPKPF 511 (632)
Q Consensus 478 q~aRk~lI~~l~~~~~~~~~IgiKrmGeld~kpf 511 (632)
+-.++.|.+.|.. .||++|+-+ ..||
T Consensus 152 e~i~k~l~~~L~k-------~GV~~i~~~-G~~F 177 (238)
T PRK14143 152 QGLYKQLVDVLKR-------LGVSPMRVV-GQEF 177 (238)
T ss_pred HHHHHHHHHHHHH-------CCCeeeCCC-CCCC
Confidence 3345667776663 688888765 4444
No 207
>PTZ00491 major vault protein; Provisional
Probab=33.66 E-value=6.6e+02 Score=31.25 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=18.7
Q ss_pred hHHHhhhhhHHHHHHHhhhhhHHHHhHH
Q 006762 260 SKIDMKNEDLSELQCKFNETTMSLSRML 287 (632)
Q Consensus 260 n~I~~knk~l~elE~k~ne~t~sL~r~m 287 (632)
|-+...+=+++.+|..=..|..+|++-.
T Consensus 626 N~lvit~VDvqsvEpvD~~tr~~LqkSV 653 (850)
T PTZ00491 626 NNLVITNVDVQSVEPVDERTRDSLQKSV 653 (850)
T ss_pred CCeEEEEEeeeeeeecCHHHHHHHHHHH
Confidence 4455566677777777777777776655
No 208
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=33.62 E-value=2.8e+02 Score=33.04 Aligned_cols=46 Identities=33% Similarity=0.489 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhh
Q 006762 381 NVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKH 429 (632)
Q Consensus 381 ~vlkLve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh 429 (632)
...+.+++++|=++-+.-.+.+||-. +|+|.-||++++-+.+-.|.
T Consensus 76 s~~r~~~e~~RI~~sVs~EL~ele~k---rqel~seI~~~n~kiEelk~ 121 (907)
T KOG2264|consen 76 SIGRILREQKRILASVSLELTELEVK---RQELNSEIEEINTKIEELKR 121 (907)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHH
Confidence 45677899999999999999988753 69999999998877664444
No 209
>PRK01156 chromosome segregation protein; Provisional
Probab=33.48 E-value=9.7e+02 Score=29.25 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=21.2
Q ss_pred HhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHh
Q 006762 251 KIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSR 285 (632)
Q Consensus 251 ~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r 285 (632)
.+.++.++...|......+.+++.........+.+
T Consensus 467 ~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~ 501 (895)
T PRK01156 467 SNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVD 501 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667776766666666666655544444443
No 210
>PRK10698 phage shock protein PspA; Provisional
Probab=33.11 E-value=5.6e+02 Score=26.38 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHH
Q 006762 289 EKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWS 337 (632)
Q Consensus 289 Ek~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~ 337 (632)
+=.+++..|-.||+.--..++..+.+++-....+..+++.-....+.|.
T Consensus 24 DP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e 72 (222)
T PRK10698 24 DPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQ 72 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555556666666666555555555444444444
No 211
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=32.99 E-value=5.7e+02 Score=26.41 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=25.6
Q ss_pred HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHH
Q 006762 409 AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLI 467 (632)
Q Consensus 409 ~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~ 467 (632)
+++.|..+|.+|+..++.++-- .....+-++.++.++.+...+++.++...+.|.
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~----~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVY----NEQLERQVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544431 122333444555555555555544444444443
No 212
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=32.81 E-value=1e+03 Score=29.33 Aligned_cols=85 Identities=27% Similarity=0.530 Sum_probs=45.9
Q ss_pred HHHHHHHhhHHhhhhhhHHH----hhhhHHHHhhc-CCCCc-----HHHHHHHHH------HHHHHHhHHhhHHHHHHhh
Q 006762 400 ILQLEKQLDAKQKLEMEIED----LKGKLEVMKHL-GDEDD-----AAVQKKMKE------MNDELESKIDDLDEMESLN 463 (632)
Q Consensus 400 il~LekqL~~kQ~LELEi~q----LkG~L~VmKh~-~~~~d-----~~~~~k~~~------l~~~l~ek~~el~~~e~~n 463 (632)
++++|+.+..|=+=.+|-+| |+.||.+++.- ++++| .++++||++ ..++......-|+.|..++
T Consensus 207 ~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~~e~~~~~~kie~~~~p~evk~k~~~El~kL~~m~~~S 286 (782)
T COG0466 207 LLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMS 286 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 66777777777666666666 77888888764 33322 334444432 2233333333344333333
Q ss_pred HH----------HH----HHHhhccHHHHHHHHHH
Q 006762 464 KT----------LI----AKERQSNDELQEARREL 484 (632)
Q Consensus 464 q~----------L~----~ker~sndELq~aRk~l 484 (632)
.. |+ .+.-+.+-.|..|++.|
T Consensus 287 aE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iL 321 (782)
T COG0466 287 AEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKIL 321 (782)
T ss_pred chHHHHHHHHHHHHhCCCccccchhhhHHHHHHHh
Confidence 21 11 14555666788888764
No 213
>PHA02540 61 DNA primase; Provisional
Probab=32.46 E-value=27 Score=38.26 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=36.0
Q ss_pred EeecCC--eeeccCCCCCCcC----ccCchhH----HhhhccCCCCCCCcChHHHHhHHHHHHHHHHhcCCCC
Q 006762 33 KVRVNG--TLRCPFCSGKKKQ----DYKHKDL----LQHASGVGKGSANRSAKQKANHLALAKYLEVDLAGGV 95 (632)
Q Consensus 33 kVk~~~--~~~CP~C~gkkk~----~y~~~~L----LqHA~gvG~sss~r~~k~ka~HraLak~Le~dl~~~~ 95 (632)
+|+..+ .++||||..+.++ .+.+.+= +=|-.|-|.+-.-=+--....|+.+-.||+......+
T Consensus 19 ~~~~~~~~~~~CPf~~ds~~~~~kpsF~V~p~k~~~~yhCFgCGa~Gd~i~Flme~e~lsf~Eav~~la~~~g 91 (337)
T PHA02540 19 QVRRSSFYNFRCPICGDSQKDKNKARGWIYEKKDGGVFKCHNCGYHRPFGNFLKDYEPDLYREYIMERFKERG 91 (337)
T ss_pred eeccCceEEecCCCCCCccccCcCCcEEEeccCCceEEEecCCCCCCCHHHHHHHhcCCChHHHHHHHHHHhC
Confidence 345333 6899999976543 3334333 3377776655211112345566777778877766655
No 214
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=32.40 E-value=71 Score=36.10 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=44.8
Q ss_pred eeecce--EEEEeccccccCCccccCChhhHhh-hcccCC---ceeeeeccCCCCcceEEEEeCCChhchhhHHHHHhhh
Q 006762 117 YVWPWM--GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP---VEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAF 190 (632)
Q Consensus 117 iVWPwm--gII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p---~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~lek~F 190 (632)
.++||. ..|-|+|.. .+...|++ |+.|.. ..++.+-...+.+|+++|+|.+.-.- ..|+..=+++
T Consensus 389 ~~~~ps~~L~v~NLp~~--------~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A-~~Al~~ln~~ 459 (481)
T TIGR01649 389 NIQPPSATLHLSNIPLS--------VSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDA-VEALIALNHH 459 (481)
T ss_pred ccCCCCcEEEEecCCCC--------CCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHH-HHHHHHhcCC
Confidence 457885 456688753 36778999 998874 44555444556689999999984443 3555544455
Q ss_pred hhcC
Q 006762 191 DADH 194 (632)
Q Consensus 191 e~~~ 194 (632)
...+
T Consensus 460 ~l~~ 463 (481)
T TIGR01649 460 QLNE 463 (481)
T ss_pred ccCC
Confidence 4443
No 215
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=32.37 E-value=6.9e+02 Score=27.23 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=16.0
Q ss_pred hhhHHHHHHHhhhhhHHHHhHHHHHHHH
Q 006762 266 NEDLSELQCKFNETTMSLSRMLEEKDRL 293 (632)
Q Consensus 266 nk~l~elE~k~ne~t~sL~r~meEk~~l 293 (632)
...|.++|+||...-++...+=.||..|
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l 110 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSAL 110 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHH
Confidence 3456677777776655555544444443
No 216
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=31.76 E-value=9.3e+02 Score=29.05 Aligned_cols=162 Identities=23% Similarity=0.273 Sum_probs=88.8
Q ss_pred HHHHHHHhhhhhHHHHhHH--------------------HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q 006762 269 LSELQCKFNETTMSLSRML--------------------EEKDRLHYAFVEETRKMQR---------LARDNVRRILEEQ 319 (632)
Q Consensus 269 l~elE~k~ne~t~sL~r~m--------------------eEk~~lh~~yneE~rkmQ~---------~a~~~~~rI~~e~ 319 (632)
+++.|.+|-++-.|+.+.. ||--++|.++-.||..--. .+-++-.|.+- .
T Consensus 205 i~~TE~kY~~tL~sI~k~f~~PLk~~l~~ad~~ivFiNieel~klHt~ll~ei~~sv~v~~~qtl~qVFikyker~li-Y 283 (865)
T KOG2996|consen 205 IQQTEEKYTQTLESIEKTFMEPLKRFLPPADYNIVFINIEELNKLHTALLAEIEYSVKVAGGQTLYQVFIKYKERLLI-Y 283 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhheeEecHHHHHHHHHHHHHHhHHHhhCCCcccHHHHHHHHHHHHhh-h
Confidence 4556666666666655543 6677899999888864332 33333332221 1
Q ss_pred HHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHh-hhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006762 320 EKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQ-NDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALS 398 (632)
Q Consensus 320 ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~k-n~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~ 398 (632)
-+.=+.+ ++-.+-|+.+.+-++.-++||++=-.+ |.-+-..-.|-..-=| + +-
T Consensus 284 G~YCS~~-------e~a~k~ln~llktrEdv~~kleEct~r~nngkF~l~DLL~VPmQ-------R------------vl 337 (865)
T KOG2996|consen 284 GKYCSNV-------ESARKLLNELLKTREDVSRKLEECTARANNGKFTLRDLLVVPMQ-------R------------VL 337 (865)
T ss_pred hhhhccc-------hHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCceeeceeeeeeHH-------H------------HH
Confidence 1222333 444566788888888888888754332 2111111111111100 1 22
Q ss_pred HHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCC-----CCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHH
Q 006762 399 KILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGD-----EDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLI 467 (632)
Q Consensus 399 kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~-----~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~ 467 (632)
|-.-|=|+|-.+-.+-.|-++|+..|+||+-+-. --|-+..++|++.+-- .++|+|-|-
T Consensus 338 KYhLLLkEL~kht~~a~ek~~LkeAleaM~Dla~yiNEvkRD~etlr~I~efq~S----------IenL~~pl~ 401 (865)
T KOG2996|consen 338 KYHLLLKELVKHTDEASEKRNLKEALEAMEDLAQYINEVKRDNETLRVIDEFQLS----------IENLSQPLH 401 (865)
T ss_pred HHHHHHHHHHHhcccCChhhhHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHh----------HHhhcchHH
Confidence 3344556666777778888899999999987521 1244445555555432 356666654
No 217
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=31.04 E-value=1.7e+02 Score=26.31 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=41.1
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHH
Q 006762 254 VVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETR 302 (632)
Q Consensus 254 lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~r 302 (632)
-.+.+-.++..-|-.|..||.+..-....|+.+++.+++.+..|.++..
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566777888888999999999999999999999998888888777654
No 218
>smart00360 RRM RNA recognition motif.
Probab=30.88 E-value=72 Score=23.86 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=29.3
Q ss_pred cCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHH
Q 006762 139 LDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 139 G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~ 184 (632)
+.+...|+. |+.|.++ .+.....+ ..++|++.|.|... ..-..|+
T Consensus 7 ~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~-~~a~~a~ 55 (71)
T smart00360 7 DVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESE-EDAEKAL 55 (71)
T ss_pred ccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCH-HHHHHHH
Confidence 346778888 8889865 44444443 35789999999653 4434443
No 219
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=30.77 E-value=5.1e+02 Score=25.22 Aligned_cols=130 Identities=28% Similarity=0.350 Sum_probs=64.9
Q ss_pred HHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhH---HH
Q 006762 274 CKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTE---RE 350 (632)
Q Consensus 274 ~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~---~e 350 (632)
.++..+...|.++-.+++.|.. +.+-+..=-+.+..+...++-+++..+.++++-..+|..=...|+.+...-. ++
T Consensus 3 ~K~l~v~~kLK~~~~e~dsle~-~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 3 EKFLHVEEKLKESESEKDSLED-HVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHHHHHHHHHHHhHhhHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666665533 2222222223345555666667777776655544444444444444333322 46
Q ss_pred HHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 006762 351 RQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQK-REKEEALSKILQLEKQLD 408 (632)
Q Consensus 351 r~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hk-rEke~~~~kil~LekqL~ 408 (632)
+..|.++.++...+.+.|...... -.+.+.-+|..+ +.++.+-..+.+|.+||.
T Consensus 82 k~~L~k~lq~~q~kv~eLE~~~~~----~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 82 KENLDKELQKKQEKVSELESLNSS----LENLLQEKEQEKVQLKEESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777766666566655544322 122333333332 233444455555555554
No 220
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=30.70 E-value=8.5e+02 Score=27.75 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=11.3
Q ss_pred HHHHHHHHhhHHhhhhhhHHHhhhhHHH
Q 006762 399 KILQLEKQLDAKQKLEMEIEDLKGKLEV 426 (632)
Q Consensus 399 kil~LekqL~~kQ~LELEi~qLkG~L~V 426 (632)
+---|+|+|++|+ -|.+||++++.|
T Consensus 357 erd~L~keLeekk---releql~~q~~v 381 (442)
T PF06637_consen 357 ERDSLAKELEEKK---RELEQLKMQLAV 381 (442)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 3334444444432 244555555543
No 221
>smart00400 ZnF_CHCC zinc finger.
Probab=30.67 E-value=62 Score=25.81 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=27.0
Q ss_pred hhcCCeEee-cCCeeeccCCCCCCcCccCchhHHhhhccC
Q 006762 27 LRAGKYKVR-VNGTLRCPFCSGKKKQDYKHKDLLQHASGV 65 (632)
Q Consensus 27 Lk~g~~kVk-~~~~~~CP~C~gkkk~~y~~~~LLqHA~gv 65 (632)
=++.++.|+ ..+.|+|=.|..+ .+.=+|+++-.|+
T Consensus 10 d~~pSf~v~~~kn~~~Cf~cg~g----Gd~i~fv~~~~~~ 45 (55)
T smart00400 10 EKTPSFSVSPDKQFFHCFGCGAG----GNVISFLMKYDKL 45 (55)
T ss_pred CCCCCEEEECCCCEEEEeCCCCC----CCHHHHHHHHHCc
Confidence 356778899 7789999999633 4677888888775
No 222
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=30.48 E-value=67 Score=33.86 Aligned_cols=66 Identities=18% Similarity=0.133 Sum_probs=52.7
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hccc-CCceeeeeccCCC-CcceEEEEeCCChhchhhHHHHHhhhhhcCC
Q 006762 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVF-KPVEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDFEKAFDADHQ 195 (632)
Q Consensus 121 wmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F-~p~kv~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~lek~Fe~~~~ 195 (632)
=.++|-|.++ |.....|++ |..| .+.+|-.=|++.| ..|++-|.|...-.++.--..|+. |..+|.
T Consensus 84 ~~v~v~NL~~--------~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG~ 152 (243)
T KOG0533|consen 84 TKVNVSNLPY--------GVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG-VALDGR 152 (243)
T ss_pred ceeeeecCCc--------CcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC-cccCCc
Confidence 3467888865 667788899 9999 7888888888887 559999999999888888888887 665543
No 223
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=29.98 E-value=4.7e+02 Score=24.54 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=20.7
Q ss_pred HHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 006762 317 EEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQ 359 (632)
Q Consensus 317 ~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~ 359 (632)
.+...++.++..-..+.+.-...|+..++.-+.++..|+.++.
T Consensus 66 ~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~ 108 (132)
T PF07926_consen 66 EELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELS 108 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333344444444444444444555555555555555555544
No 224
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=29.98 E-value=7.2e+02 Score=26.70 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=6.2
Q ss_pred HHHHHHHHHHh
Q 006762 616 VISYIVGNIRR 626 (632)
Q Consensus 616 ~~~~~~~~~k~ 626 (632)
.++||+.-+..
T Consensus 404 ~~~~~l~~~~~ 414 (423)
T TIGR01843 404 VIEYLLKPITD 414 (423)
T ss_pred HHHHHHHHHHH
Confidence 46666655543
No 225
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=29.81 E-value=3.1e+02 Score=29.02 Aligned_cols=64 Identities=25% Similarity=0.303 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHH
Q 006762 386 VEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDEL 449 (632)
Q Consensus 386 ve~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l 449 (632)
.++-..||+++++.+-+||-++.+-|.-=-+++-=+.+|+-|-..--++-.+++++.++|...+
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 3444568899999999999888877653222222233444333332234566677776666554
No 226
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=29.79 E-value=7.7e+02 Score=26.95 Aligned_cols=101 Identities=25% Similarity=0.384 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhh----hhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHH
Q 006762 385 LVEEQKREKEEALSKILQLEKQLDAKQK----LEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEME 460 (632)
Q Consensus 385 Lve~hkrEke~~~~kil~LekqL~~kQ~----LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e 460 (632)
=+..-+.+-.++|.+|.+|=.|.++-.. +=-++..++-.-.-|.-+ -.+...+++++++++.....++.+++
T Consensus 166 ei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~----~ve~~~~~~e~~ee~~~~~~elre~~ 241 (294)
T COG1340 166 EIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEE----FVELSKKIDELHEEFRNLQNELRELE 241 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344455666778888887777744332 112333344333333322 34556778888888888888888777
Q ss_pred HhhHHHHHH-----HhhccHHHHHHHHHHHHhhh
Q 006762 461 SLNKTLIAK-----ERQSNDELQEARRELIQGLS 489 (632)
Q Consensus 461 ~~nq~L~~k-----er~sndELq~aRk~lI~~l~ 489 (632)
..-.+|..+ .|..-++|++-.+++-.-|.
T Consensus 242 k~ik~l~~~~~~~~~~~~~ee~kera~ei~EKfk 275 (294)
T COG1340 242 KKIKALRAKEKAAKRREKREELKERAEEIYEKFK 275 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777654 44455667766666655554
No 227
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=29.74 E-value=1.1e+03 Score=28.52 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhhc
Q 006762 435 DAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDL 491 (632)
Q Consensus 435 d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~~~ 491 (632)
-+..+..|..|..+|..+..+++.|...=+. -....+.+++| +.|..|
T Consensus 312 ~e~~~~qI~~le~~l~~~~~~leel~~kL~~--------~sDYeeIK~EL-siLk~i 359 (629)
T KOG0963|consen 312 REKHKAQISALEKELKAKISELEELKEKLNS--------RSDYEEIKKEL-SILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccHHHHHHHH-HHHHHh
Confidence 3455677788888888888887766432221 14567777776 445544
No 228
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=29.67 E-value=45 Score=30.16 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=27.2
Q ss_pred eEEEEeccccccCCccccCChhhHhhhcccCCceeeeeccCCCCcceEEEEeCCC
Q 006762 122 MGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d~~~F~p~kv~~l~~~~Gh~G~aVV~F~~d 176 (632)
+.+|.|.|+..+-. . --..|+.|+.=|+++|-.+- .|.|||.|.+-
T Consensus 4 ~L~V~NLP~~~d~~-~---I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~ 49 (90)
T PF11608_consen 4 LLYVSNLPTNKDPS-S---IKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQ 49 (90)
T ss_dssp EEEEES--TTS-HH-H---HHHHHHHHHHTTT--EEE-------TT-EEEEESSH
T ss_pred EEEEecCCCCCCHH-H---HHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCH
Confidence 46789999866421 1 23566668889999999984 27899999874
No 229
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=29.53 E-value=28 Score=33.35 Aligned_cols=13 Identities=38% Similarity=1.099 Sum_probs=10.1
Q ss_pred cCCeeeccCCCCC
Q 006762 36 VNGTLRCPFCSGK 48 (632)
Q Consensus 36 ~~~~~~CP~C~gk 48 (632)
+++.|.||.|.+.
T Consensus 120 ~~~~f~Cp~Cg~~ 132 (147)
T smart00531 120 MDGTFTCPRCGEE 132 (147)
T ss_pred CCCcEECCCCCCE
Confidence 4567999999854
No 230
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=29.26 E-value=24 Score=28.21 Aligned_cols=10 Identities=50% Similarity=1.401 Sum_probs=7.9
Q ss_pred eccCCCCCCc
Q 006762 41 RCPFCSGKKK 50 (632)
Q Consensus 41 ~CP~C~gkkk 50 (632)
.||||.+...
T Consensus 3 PCPfCGg~~~ 12 (53)
T TIGR03655 3 PCPFCGGADV 12 (53)
T ss_pred CCCCCCCcce
Confidence 6999987654
No 231
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=29.08 E-value=68 Score=25.53 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=18.7
Q ss_pred hhhhHHHHhHHHH---HHHHHHHHHHH
Q 006762 277 NETTMSLSRMLEE---KDRLHYAFVEE 300 (632)
Q Consensus 277 ne~t~sL~r~meE---k~~lh~~yneE 300 (632)
+..|-|++++|+| |+.++.+||++
T Consensus 4 D~iT~SM~~ai~eT~rRR~~Q~~yN~~ 30 (44)
T PF12344_consen 4 DKITDSMQKAIDETNRRREIQIAYNKE 30 (44)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999988 77889999987
No 232
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=29.01 E-value=3.3e+02 Score=27.58 Aligned_cols=55 Identities=22% Similarity=0.408 Sum_probs=33.6
Q ss_pred HHHHHHhhHHHHHHHhhccHH------HHHHHHHHHHhhhhccCCcccccccccCC---CCChhhHHHHhh
Q 006762 456 LDEMESLNKTLIAKERQSNDE------LQEARRELIQGLSDLIGARTNIGVKRLGE---IDPKPFQDACKN 517 (632)
Q Consensus 456 l~~~e~~nq~L~~ker~sndE------Lq~aRk~lI~~l~~~~~~~~~IgiKrmGe---ld~kpf~~ac~~ 517 (632)
|..+++|..+|..-.-.++.+ ++-.++.|++.|.. -||+.+|. .=.--||.|+..
T Consensus 93 LpviDnlerAl~~~~~~~d~~~~l~~Gvem~~~~l~~~L~k-------~Gv~~i~~~Ge~FDP~~HeAv~~ 156 (193)
T COG0576 93 LPVIDNLERALEAAEDDKDPEKALLEGVEMTLDQLLDALEK-------LGVEEIGPEGEKFDPNLHEAVQR 156 (193)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH-------CCCEEeCCCCCCCCHHHhhheee
Confidence 677788888887755555544 66666666666664 46666654 222235666544
No 233
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=28.39 E-value=6.2e+02 Score=30.39 Aligned_cols=78 Identities=17% Similarity=0.275 Sum_probs=63.0
Q ss_pred HHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006762 244 VQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE------KDRLHYAFVEETRKMQRLARDNVRRILE 317 (632)
Q Consensus 244 ~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE------k~~lh~~yneE~rkmQ~~a~~~~~rI~~ 317 (632)
.....++-.+-|+-|...|....+.++.+|.......+++.+|..+ |.-|+++|+.-.+.-+..++++.+||=.
T Consensus 77 ~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~ 156 (632)
T PF14817_consen 77 EARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQG 156 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334446677899999999999999999999999999999999876 4578999999998888888888887754
Q ss_pred HHHH
Q 006762 318 EQEK 321 (632)
Q Consensus 318 e~ek 321 (632)
--+.
T Consensus 157 ~~~~ 160 (632)
T PF14817_consen 157 QVEQ 160 (632)
T ss_pred HHHH
Confidence 4433
No 234
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=28.04 E-value=1.5e+03 Score=29.71 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=37.5
Q ss_pred HHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhH
Q 006762 261 KIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRK---MQRLARDNVRRILEEQEKLSC 324 (632)
Q Consensus 261 ~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rk---mQ~~a~~~~~rI~~e~ekl~~ 324 (632)
.|...+..+..+-++..+....+...-.+.+...++|.+++.+ -+..|.+....|..-+..|+.
T Consensus 886 ~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~ 952 (1294)
T KOG0962|consen 886 DIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQ 952 (1294)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444445567788888888877 577777777777666655543
No 235
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.02 E-value=9.8e+02 Score=27.60 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=50.8
Q ss_pred eecccCCCCCCCChhhhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH----
Q 006762 214 WFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE---- 289 (632)
Q Consensus 214 WvAradDy~~~g~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE---- 289 (632)
|+|.++|+...|.+|..- .|||--.---.++..-++..+-+.-.-.--.|..-+.++.-.+.+--.||.-.|.+
T Consensus 19 ~~a~ee~~~rq~a~~qa~--q~dl~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ 96 (542)
T KOG0993|consen 19 YLAKEEDLKRQNAVLQAA--QDDLGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPT 96 (542)
T ss_pred ccchhhHHHhccchhhhh--cchHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCcc
Confidence 589999999988887642 23443332222333333322222222112234445555666666667777777755
Q ss_pred -HHHHHHHHHHHHHHHHHH
Q 006762 290 -KDRLHYAFVEETRKMQRL 307 (632)
Q Consensus 290 -k~~lh~~yneE~rkmQ~~ 307 (632)
--++|+.|..|..-.|+-
T Consensus 97 ye~q~~~~leqertq~qq~ 115 (542)
T KOG0993|consen 97 YECQMCQNLEQERTQLQQN 115 (542)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 226777777776666554
No 236
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=27.90 E-value=1.2e+03 Score=28.66 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=62.2
Q ss_pred CCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHh---hhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006762 237 LRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKF---NETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVR 313 (632)
Q Consensus 237 LKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~---ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~ 313 (632)
-++|.+||..+..-....|+.|--.-+....-..+.|+.- -+.|.-|+....+....+.+|.+++.|--..|+--.-
T Consensus 412 rr~v~~mv~~grk~~~~~~~e~~ar~~~l~~v~re~eeer~aalias~~l~ea~~~irlqy~~~~~~l~k~~~~a~gvld 491 (828)
T PF04094_consen 412 RRAVDAMVEVGRKAHQAHLAEIQAREETLDSVMRETEEERQAALIASSVLDEALGDIRLQYEAHAEDLAKRVDDARGVLD 491 (828)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHhhhhhhh
Confidence 4567777766655444555554433333333333333332 2345556666666778899999999887666554322
Q ss_pred HHHHHHHHhhHH----HHHHHhhhHHHHHHHHHHHhhhH
Q 006762 314 RILEEQEKLSCE----LETKKKKLDSWSKQLNKREALTE 348 (632)
Q Consensus 314 rI~~e~ekl~~e----Le~k~~eL~~r~k~L~k~~~~~~ 348 (632)
... -++.--.+ +...+..|+.+.+.|+++...-+
T Consensus 492 aaa-arErrAsE~eas~r~R~~ALEara~ALeERAr~~e 529 (828)
T PF04094_consen 492 AAA-ARERRASEAEASLRAREEALEARAKALEERARAAE 529 (828)
T ss_pred hhh-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 211 11222223 33455668888888888875544
No 237
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.87 E-value=6.8e+02 Score=25.71 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=8.5
Q ss_pred hhhhhcCCCCCceeeeecc
Q 006762 199 HWIARKESPGLRIYGWFAR 217 (632)
Q Consensus 199 dW~~~~~~~~~~LYGWvAr 217 (632)
+|...+.. .+-=|||+.
T Consensus 66 ~w~~Vr~~--~G~~GWV~~ 82 (206)
T PRK10884 66 NYAQIRDS--KGRTAWIPL 82 (206)
T ss_pred CEEEEEeC--CCCEEeEEH
Confidence 56554432 122399853
No 238
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.82 E-value=4.3e+02 Score=30.23 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhhccCC--------cccccccccCCC
Q 006762 435 DAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGA--------RTNIGVKRLGEI 506 (632)
Q Consensus 435 d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~~~~~~--------~~~IgiKrmGel 506 (632)
.+.++..+..|.++|++.+..+. +++.....++..|..+... ..|+=|++-|+.
T Consensus 70 ~~~l~~e~~~l~~~l~~~e~~~~------------------~~~~~l~~~ll~ipNi~~~~VPvg~de~~n~~vr~~g~~ 131 (429)
T COG0172 70 AEELIAEVKELKEKLKELEAALD------------------ELEAELDTLLLTIPNIPHESVPVGKDEDDNVEVRRWGEP 131 (429)
T ss_pred HHHHHHHHHHHHHHHHhccHHHH------------------HHHHHHHHHHHhCCCCCccccCcCCCcccceEEEEEecC
Confidence 46677778888888877777664 4555555666677766543 445558898987
Q ss_pred C
Q 006762 507 D 507 (632)
Q Consensus 507 d 507 (632)
.
T Consensus 132 ~ 132 (429)
T COG0172 132 P 132 (429)
T ss_pred c
Confidence 3
No 239
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=27.65 E-value=3.7e+02 Score=28.68 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=12.6
Q ss_pred CCceeeeecccCCCC
Q 006762 208 GLRIYGWFARADDNT 222 (632)
Q Consensus 208 ~~~LYGWvAradDy~ 222 (632)
++.+||++++-+|-.
T Consensus 140 ~G~~yG~ll~~~~ng 154 (289)
T COG4985 140 GGQLYGKLLRFDSNG 154 (289)
T ss_pred CcchhhheeeeccCC
Confidence 679999999987754
No 240
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=27.54 E-value=1e+03 Score=27.66 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=11.8
Q ss_pred HhhhhhhHHHhhhhHH-HHhhcC
Q 006762 410 KQKLEMEIEDLKGKLE-VMKHLG 431 (632)
Q Consensus 410 kQ~LELEi~qLkG~L~-VmKh~~ 431 (632)
.+..+..|+.|+.+|. +|=+|+
T Consensus 430 ~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 430 LGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHHHHHHHHHhHheehh
Confidence 4445555666665553 555553
No 241
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=27.50 E-value=1e+03 Score=27.64 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhHHhhHHHH-----------------HHhhHHHHHHHhhccHHHHHHHHH
Q 006762 439 QKKMKEMNDELESKIDDLDEM-----------------ESLNKTLIAKERQSNDELQEARRE 483 (632)
Q Consensus 439 ~~k~~~l~~~l~ek~~el~~~-----------------e~~nq~L~~ker~sndELq~aRk~ 483 (632)
++.++-++..|+.-+.+|+.. |.-.|-+-+|-..+.-+|+.|+..
T Consensus 308 rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~ 369 (575)
T KOG4403|consen 308 RKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEM 369 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445666777777777776643 122333445555555666666654
No 242
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=27.49 E-value=1.3e+02 Score=32.00 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhh-hhhhHHHhhhhHHHHhhc
Q 006762 388 EQKREKEEALSKILQLEKQLDAKQK-LEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 388 ~hkrEke~~~~kil~LekqL~~kQ~-LELEi~qLkG~L~VmKh~ 430 (632)
.=+.|.+++..++.+|..++..... |+.|.++|+..|......
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~~ 113 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLSS 113 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 3357888899999999777766655 999999999999887654
No 243
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=27.43 E-value=1.3e+03 Score=28.89 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006762 382 VLRLVEEQKREKEEALSKILQLEKQLD 408 (632)
Q Consensus 382 vlkLve~hkrEke~~~~kil~LekqL~ 408 (632)
.-+-+++..+|+.++..++..++|.+|
T Consensus 668 ~~~q~eel~Ke~kElq~rL~~q~KkiD 694 (988)
T KOG2072|consen 668 KARQIEELEKERKELQSRLQYQEKKID 694 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334566666777777777777776665
No 244
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=27.31 E-value=25 Score=30.89 Aligned_cols=11 Identities=36% Similarity=1.210 Sum_probs=4.5
Q ss_pred cCCeeeccCCC
Q 006762 36 VNGTLRCPFCS 46 (632)
Q Consensus 36 ~~~~~~CP~C~ 46 (632)
...+|.||||.
T Consensus 19 l~~~F~CPfC~ 29 (81)
T PF05129_consen 19 LPKVFDCPFCN 29 (81)
T ss_dssp -SS----TTT-
T ss_pred CCceEcCCcCC
Confidence 66899999997
No 245
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=27.23 E-value=1e+03 Score=27.49 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=43.9
Q ss_pred hhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHH
Q 006762 413 LEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAK 469 (632)
Q Consensus 413 LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~k 469 (632)
-+-||+.|+-+|.+--+... -.|+-+.+..|.+-|-.|-..|+.+-.-+.+|.+.
T Consensus 367 ke~E~q~lr~~l~~~~~~s~--~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lq 421 (511)
T PF09787_consen 367 KESEIQKLRNQLSARASSSS--WNELESRLTQLTESLIQKQTQLESLGSEKNALRLQ 421 (511)
T ss_pred HHHHHHHHHHHHHHHhccCC--cHhHHHHHhhccHHHHHHHHHHHHHHhhhhhcccc
Confidence 37888999888877554433 45788899999999999999999888888888864
No 246
>PF03804 DUF325: Viral domain of unknown function; InterPro: IPR003225 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.91 E-value=39 Score=29.00 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.8
Q ss_pred cccccccccCCCCChhhHHHHhh
Q 006762 495 RTNIGVKRLGEIDPKPFQDACKN 517 (632)
Q Consensus 495 ~~~IgiKrmGeld~kpf~~ac~~ 517 (632)
-++--|.|.|-+|-..|+.||+.
T Consensus 33 vt~~dV~RFgf~dRnalv~ACM~ 55 (71)
T PF03804_consen 33 VTHADVRRFGFLDRNALVSACMA 55 (71)
T ss_pred ccHhHHHHhCCCcHHHHHHHHHh
Confidence 56678999999999999999986
No 247
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=26.88 E-value=6.5e+02 Score=25.53 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=6.4
Q ss_pred hhhHHHhhhhHHHHh
Q 006762 414 EMEIEDLKGKLEVMK 428 (632)
Q Consensus 414 ELEi~qLkG~L~VmK 428 (632)
|..|.+|+.+.++|+
T Consensus 137 e~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 137 EMKILELQRQAAKLK 151 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 248
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=26.80 E-value=1.1e+03 Score=27.84 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=7.0
Q ss_pred ccCCceeeeeccCCC
Q 006762 150 VFKPVEVRIFWNEEN 164 (632)
Q Consensus 150 ~F~p~kv~~l~~~~G 164 (632)
.+-|..+.+++.++|
T Consensus 141 ~ilp~~~~~~FfFDG 155 (650)
T TIGR03185 141 ELLPLELADLFFFDG 155 (650)
T ss_pred HhCCHhHHHHhcccH
Confidence 344444444444443
No 249
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=26.78 E-value=34 Score=27.98 Aligned_cols=18 Identities=33% Similarity=0.722 Sum_probs=12.1
Q ss_pred cCCe-Eee-cCCeeeccCCC
Q 006762 29 AGKY-KVR-VNGTLRCPFCS 46 (632)
Q Consensus 29 ~g~~-kVk-~~~~~~CP~C~ 46 (632)
+|-+ +.. ..-+|+||+|.
T Consensus 32 NGla~~~~~~~i~y~C~~Cg 51 (54)
T PF10058_consen 32 NGLAPKEEFEEIQYRCPYCG 51 (54)
T ss_pred hcccccccCCceEEEcCCCC
Confidence 4443 344 55599999996
No 250
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.72 E-value=1.2e+03 Score=28.36 Aligned_cols=188 Identities=19% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006762 244 VQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLS 323 (632)
Q Consensus 244 ~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~ 323 (632)
......+.+.-++-+.+++-.-+..++.+....+..---|++--.+-+...+.-.+.+...++.+--..+.---+..=..
T Consensus 156 ~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~ 235 (716)
T KOG4593|consen 156 LGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSL 235 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q ss_pred H-HHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006762 324 C-ELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQ 402 (632)
Q Consensus 324 ~-eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~ 402 (632)
. ||+........+-.+|.++......-+..+..-++.++ .|..=+-|.|.+.+++-+
T Consensus 236 ~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~----------------------tv~~LqeE~e~Lqskl~~ 293 (716)
T KOG4593|consen 236 SEELEAINKNMKDQLQELEELERALSQLREELATLRENRE----------------------TVGLLQEELEGLQSKLGR 293 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------hhHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHH
Q 006762 403 LEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKT 465 (632)
Q Consensus 403 LekqL~~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~ 465 (632)
|++=-+..--||||...|+.+|+=-+...++.+ .+..+..-|+.+...-+.
T Consensus 294 ~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~------------~~~~~~~~~~~~~~e~s~ 344 (716)
T KOG4593|consen 294 LEKLQSTLLGLELENEDLLTKLQRWERADQEMG------------SLRTPEDLMEKLVNEQSR 344 (716)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh------------ccCCHHHHHHHHHHHHHH
No 251
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.27 E-value=1.5e+03 Score=29.14 Aligned_cols=73 Identities=25% Similarity=0.334 Sum_probs=43.0
Q ss_pred HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHH
Q 006762 409 AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELI 485 (632)
Q Consensus 409 ~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI 485 (632)
-.+.||-.|.+|++.+ +.-- .--..+.-+|.+++..+.+...++..++...-.+.-+.-.-|+||++.+.+|-
T Consensus 403 ~~~elE~r~k~l~~sv--er~~--~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~ 475 (1141)
T KOG0018|consen 403 RRAELEARIKQLKESV--ERLD--KRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLL 475 (1141)
T ss_pred HHHHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3455666666666555 1110 01123445566667777777777777777666666666777777777665543
No 252
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.87 E-value=2.8e+02 Score=25.35 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=30.2
Q ss_pred HhhcCCCCc-HHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHH
Q 006762 427 MKHLGDEDD-AAVQKKMKEMNDELESKIDDLDEMESLNKTLIA 468 (632)
Q Consensus 427 mKh~~~~~d-~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ 468 (632)
++|||+.+| ..+.-.|.+++-++..-...++.++....-|+-
T Consensus 58 l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 58 LEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 457887665 666677788887777777777777777666664
No 253
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=25.73 E-value=1.4e+03 Score=28.72 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=40.1
Q ss_pred HHhhHHhhhhhhHHHhhh-hHHHHhhcCCCCcHHHH-------HHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHH
Q 006762 405 KQLDAKQKLEMEIEDLKG-KLEVMKHLGDEDDAAVQ-------KKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDE 476 (632)
Q Consensus 405 kqL~~kQ~LELEi~qLkG-~L~VmKh~~~~~d~~~~-------~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndE 476 (632)
+-.+..++|.-||+.+++ +++++..|..| ++... |-+..+..+..--..++.-++.+++.=-.--+.--.|
T Consensus 576 ~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d-~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~e 654 (913)
T KOG0244|consen 576 KSEGIRAKLLQEIHIAKGQKVQLLRVMKED-AEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEE 654 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888887 46777777532 22222 3344444444444455544444443221111222234
Q ss_pred HHHHHHHH
Q 006762 477 LQEARREL 484 (632)
Q Consensus 477 Lq~aRk~l 484 (632)
.-.|+|.|
T Consensus 655 as~~~krl 662 (913)
T KOG0244|consen 655 ASAANKRL 662 (913)
T ss_pred HHHHHHHH
Confidence 55555553
No 254
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=25.70 E-value=1.1e+02 Score=32.17 Aligned_cols=47 Identities=6% Similarity=0.107 Sum_probs=34.5
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC-CC-CcceEEEEeCCC
Q 006762 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE-EN-PTAQAVVKFNND 176 (632)
Q Consensus 122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~-~G-h~G~aVV~F~~d 176 (632)
.+.|-|+|.. .+..+|++ |+.|.|+ .|+.+.++ .| +.||+.|.|.+.
T Consensus 5 ~l~V~nLp~~--------~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~ 55 (352)
T TIGR01661 5 NLIVNYLPQT--------MTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRP 55 (352)
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcH
Confidence 3567888753 36788999 9999985 56666554 23 779999999764
No 255
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=25.02 E-value=35 Score=22.92 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=16.3
Q ss_pred eeeccCCCCCCcCccCchhHHhhhc
Q 006762 39 TLRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 39 ~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (632)
.|.|+.|... +-.+..|+.|-.
T Consensus 1 ~~~C~~C~~~---F~~~~~l~~H~~ 22 (27)
T PF13912_consen 1 PFECDECGKT---FSSLSALREHKR 22 (27)
T ss_dssp SEEETTTTEE---ESSHHHHHHHHC
T ss_pred CCCCCccCCc---cCChhHHHHHhH
Confidence 4899999733 456888999953
No 256
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=24.99 E-value=2.8e+02 Score=30.31 Aligned_cols=30 Identities=37% Similarity=0.510 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhHHHh
Q 006762 391 REKEEALSKILQLEKQLDAKQKLEMEIEDL 420 (632)
Q Consensus 391 rEke~~~~kil~LekqL~~kQ~LELEi~qL 420 (632)
..+.++..+|.+||+.|.+||+=||+-..+
T Consensus 45 ~~rK~~~~~~~~le~el~qkH~kEL~~~~~ 74 (302)
T KOG2606|consen 45 KKRKELTEDIAKLEKELSQKHKKELEKLKL 74 (302)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhcc
Confidence 344567889999999999999999998887
No 257
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=24.93 E-value=7.8e+02 Score=25.39 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=10.8
Q ss_pred hhhHHHhhhhHHHHhhcCCCCcHHHH
Q 006762 414 EMEIEDLKGKLEVMKHLGDEDDAAVQ 439 (632)
Q Consensus 414 ELEi~qLkG~L~VmKh~~~~~d~~~~ 439 (632)
|..+..|+.-|+=+++....+|..++
T Consensus 174 e~~~~~l~~~le~~~~~~~~~~e~f~ 199 (247)
T PF06705_consen 174 ESKLSELRSELEEVKRRREKGDEQFQ 199 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33444444444444444333333333
No 258
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=24.91 E-value=36 Score=22.45 Aligned_cols=19 Identities=32% Similarity=0.716 Sum_probs=10.0
Q ss_pred eeccCCCCCCcCccCchhHHhhh
Q 006762 40 LRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 40 ~~CP~C~gkkk~~y~~~~LLqHA 62 (632)
|+||+|+=. .....|..|-
T Consensus 1 y~C~~C~y~----t~~~~l~~H~ 19 (24)
T PF13909_consen 1 YKCPHCSYS----TSKSNLKRHL 19 (24)
T ss_dssp EE-SSSS-E----ESHHHHHHHH
T ss_pred CCCCCCCCc----CCHHHHHHHH
Confidence 789999721 1234566663
No 259
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=24.45 E-value=5.3e+02 Score=23.29 Aligned_cols=56 Identities=27% Similarity=0.282 Sum_probs=32.2
Q ss_pred hhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHH
Q 006762 267 EDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDN--VRRILEEQEKLSCEL 326 (632)
Q Consensus 267 k~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~--~~rI~~e~ekl~~eL 326 (632)
.++.-||......-.+..-+++++ .+-.+||+=+|...-.| +-|.--||-.|+.++
T Consensus 3 dkI~rLE~~~~g~l~~~~~~~~e~----~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~ 60 (86)
T PF12711_consen 3 DKIKRLEKLLDGKLPSESYLEEEN----EALKEEIQLLREQVEHNPEVTRFAMENIRLREEL 60 (86)
T ss_pred hHHHHHHHHhcCCCCccchhHHHH----HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 456666766666666666666666 44456777666655444 334444444444443
No 260
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=24.43 E-value=8.4e+02 Score=25.58 Aligned_cols=168 Identities=20% Similarity=0.390 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhH
Q 006762 290 KDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQ 369 (632)
Q Consensus 290 k~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~ 369 (632)
...+...|..||+.+++ .+..+..++-++..++++-..+++.-..+++.. -..+..++.+...
T Consensus 45 ~~~~~~~ye~el~~lr~----~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e----~~~~~~le~el~~--------- 107 (312)
T PF00038_consen 45 VSRIKEMYEEELRELRR----QIDDLSKEKARLELEIDNLKEELEDLRRKYEEE----LAERKDLEEELES--------- 107 (312)
T ss_dssp -HHHHHHHHHHHHCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH---------
T ss_pred CcccccchhhHHHHhHH----hhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHhh---------
Confidence 34567788888876543 344444455555555554444444333333322 1122223322221
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-hhhhhHHHhhhhHH--HHhhcCCCCcHHHHHHHHHHH
Q 006762 370 LASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQ-KLEMEIEDLKGKLE--VMKHLGDEDDAAVQKKMKEMN 446 (632)
Q Consensus 370 lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ-~LELEi~qLkG~L~--VmKh~~~~~d~~~~~k~~~l~ 446 (632)
+-+-++......-.+.++|..|+.+|+-.. --+-||..|+.++. +--.+.+.-..++-..|.+++
T Consensus 108 ------------lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR 175 (312)
T PF00038_consen 108 ------------LRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIR 175 (312)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHH
T ss_pred ------------hhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHH
Confidence 113445555566667778888888887654 45677999999886 111111111345556666666
Q ss_pred HHHHhHHhhH-HHHHHhhHH----HHHHHhhccHHHHHHHHHHHH
Q 006762 447 DELESKIDDL-DEMESLNKT----LIAKERQSNDELQEARRELIQ 486 (632)
Q Consensus 447 ~~l~ek~~el-~~~e~~nq~----L~~ker~sndELq~aRk~lI~ 486 (632)
.+.+...... .+++...+. |...-..++.++..++.++..
T Consensus 176 ~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~ 220 (312)
T PF00038_consen 176 AQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKE 220 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHH
Confidence 5554333221 233333332 333344566777777777644
No 261
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=24.30 E-value=1.3e+02 Score=28.58 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=43.8
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHHHH
Q 006762 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASDFE 187 (632)
Q Consensus 120 PwmgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~~le 187 (632)
+.++.|-|++. ..+...|.+ |..|.+. .++..+.. .-.+|++.|.|.+.-....-...+.
T Consensus 115 ~~~l~v~nL~~--------~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~ 178 (306)
T COG0724 115 NNTLFVGNLPY--------DVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN 178 (306)
T ss_pred CceEEEeCCCC--------CCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC
Confidence 68888999985 336778899 9999976 56665653 5688999999998765544444444
No 262
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=24.16 E-value=6.3e+02 Score=28.49 Aligned_cols=55 Identities=31% Similarity=0.493 Sum_probs=36.5
Q ss_pred CcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhhccCCcc--------cccccccCC
Q 006762 434 DDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGART--------NIGVKRLGE 505 (632)
Q Consensus 434 ~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~~~~~~~~--------~IgiKrmGe 505 (632)
+..+++.++.+|.+++.+.++++. ++++.+.+++..+..++.... |+=||+.|+
T Consensus 67 ~~~~l~~~~~~l~~~~~~~~~~~~------------------~~~~~~~~~~~~iPN~~~~~vP~g~~~~~n~~i~~~g~ 128 (425)
T PRK05431 67 DAEALIAEVKELKEEIKALEAELD------------------ELEAELEELLLRIPNLPHDSVPVGKDEDDNVEVRRWGE 128 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCCCCceEEEEeCC
Confidence 345677777777777777766663 666667777777777764433 344788886
Q ss_pred C
Q 006762 506 I 506 (632)
Q Consensus 506 l 506 (632)
-
T Consensus 129 ~ 129 (425)
T PRK05431 129 P 129 (425)
T ss_pred C
Confidence 3
No 263
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=24.13 E-value=1.9e+02 Score=31.05 Aligned_cols=44 Identities=32% Similarity=0.319 Sum_probs=33.6
Q ss_pred chhHhhHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhH
Q 006762 366 NSLQLASMEQKKADENVLRLVEEQKREK----EEALSKILQLEKQLDA 409 (632)
Q Consensus 366 ~~L~lA~~EQ~kade~vlkLve~hkrEk----e~~~~kil~LekqL~~ 409 (632)
.+..-|+-.+.-+--.|++.||+||-|- +.+.++|.+||++--.
T Consensus 234 ~a~~ea~~kel~aL~~vikcIee~kLes~~~~~~l~kri~~Lek~~~~ 281 (290)
T PF07899_consen 234 EAQNEANEKELAALKSVIKCIEEHKLESEFPLEPLQKRIEQLEKQKAD 281 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccChHHHHHHHHHHHHHHHH
Confidence 4445566666677788999999999654 4588899999998743
No 264
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=23.82 E-value=4.2e+02 Score=30.37 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH
Q 006762 236 KLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE 289 (632)
Q Consensus 236 dLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meE 289 (632)
|.+.+-++++.+.-+..--+..|+.+-...|+|++-|+++|...+.-|.+-=.|
T Consensus 108 Di~~~l~gvnSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQE 161 (558)
T PF15358_consen 108 DITELLEGVNSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQE 161 (558)
T ss_pred cHHHHHhhhcccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhH
Confidence 555555666666655555678899999999999999999999988777654433
No 265
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.79 E-value=8.2e+02 Score=25.25 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=4.7
Q ss_pred HHHHHHHhhHHh
Q 006762 400 ILQLEKQLDAKQ 411 (632)
Q Consensus 400 il~LekqL~~kQ 411 (632)
|..|+.|+++-+
T Consensus 86 l~~L~~qi~~~~ 97 (251)
T PF11932_consen 86 LASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 266
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=23.69 E-value=5.4e+02 Score=23.13 Aligned_cols=89 Identities=21% Similarity=0.250 Sum_probs=51.4
Q ss_pred hHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 006762 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKK 331 (632)
Q Consensus 252 ~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~ 331 (632)
.+...++..++.....+++-||.....++..-..|-. .-.=+..+.+.+.........+.+.| ++-++--.+||.--.
T Consensus 6 ~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~-~~~~l~~~~~~l~~k~~~l~~~l~~I-d~Ie~~V~~LE~~v~ 83 (99)
T PF10046_consen 6 SKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKD-IAAGLEKNLEDLNQKYEELQPYLQQI-DQIEEQVTELEQTVY 83 (99)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3455566666666666666666666555544443332 12222333333444333444555544 555555678888889
Q ss_pred hhHHHHHHHHH
Q 006762 332 KLDSWSKQLNK 342 (632)
Q Consensus 332 eL~~r~k~L~k 342 (632)
.||.++++|+.
T Consensus 84 ~LD~ysk~LE~ 94 (99)
T PF10046_consen 84 ELDEYSKELES 94 (99)
T ss_pred HHHHHHHHHHH
Confidence 99999988874
No 267
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.53 E-value=8.1e+02 Score=25.12 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhh-HHHHHhhhhhhchhHhhHHHHHHhhHHHHH
Q 006762 306 RLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKL-DADRQQNDLRNNSLQLASMEQKKADENVLR 384 (632)
Q Consensus 306 ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL-~~Ek~kn~~~~~~L~lA~~EQ~kade~vlk 384 (632)
.....+..++-.....+-..|+.-++..+.+|++++........-.... ..+.+|. ..-+..|...-.+++.+...
T Consensus 102 K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~---~~K~~k~~~~~~~a~~~Y~~ 178 (239)
T cd07647 102 KKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKL---KKKAAQCKTSAEEADSAYKS 178 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3334444445445555556777777888888888876432211111000 1111111 12344555666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhh-HHHhhhhHHHH
Q 006762 385 LVEEQKREKEEALSKILQLEKQLDAKQKLEME-IEDLKGKLEVM 427 (632)
Q Consensus 385 Lve~hkrEke~~~~kil~LekqL~~kQ~LELE-i~qLkG~L~Vm 427 (632)
.|+...+=.......+... ++.=|.||-+ |..|+..|.+=
T Consensus 179 ~v~~l~~~~~~~~~~~~~~---~~~~Q~lEe~Ri~~lk~~l~~y 219 (239)
T cd07647 179 SIGCLEDARVEWESEHATA---CQVFQNMEEERIKFLRNALWVH 219 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 7766655444433333332 2222555443 56666666553
No 268
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=23.26 E-value=1.4e+03 Score=27.92 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=40.0
Q ss_pred cCCCCHHHHHHHhh-----hhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHH-HHHHHHHHHHHHHHHH
Q 006762 235 GKLRTVSDIVQEDA-----QSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRML-EEKDRLHYAFVEETRK 303 (632)
Q Consensus 235 gdLKTi~ei~~E~~-----rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~m-eEk~~lh~~yneE~rk 303 (632)
.-+||.+=|..... ...-.+++-++..-..-.++|..||++|.-.-.-++--| .|-+.+...|..|+.+
T Consensus 464 ATiRtaslvtrq~~Eheqe~~l~EQmSgYKrmRrqHqkqL~~lE~r~k~e~eehr~~ldrEle~~~~~f~~e~ek 538 (948)
T KOG0577|consen 464 ATIRTASLVTRQIQEHEQESELREQMSGYKRMRRQHQKQLLALEERLKGEREEHRARLDRELETLRANFSAELEK 538 (948)
T ss_pred HHHhHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 35666665543332 244566777777777888999999999875533333222 2333444455555443
No 269
>PRK10698 phage shock protein PspA; Provisional
Probab=23.10 E-value=8.4e+02 Score=25.12 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=32.4
Q ss_pred hHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHH
Q 006762 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFV 298 (632)
Q Consensus 252 ~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yn 298 (632)
+.++....+=+..-+..+.+|+.-+.+.-..+.++|-....+...|.
T Consensus 16 n~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~ 62 (222)
T PRK10698 16 NALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIE 62 (222)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666677778888888888888888888877666544443
No 270
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=23.09 E-value=1e+03 Score=26.05 Aligned_cols=104 Identities=22% Similarity=0.373 Sum_probs=55.0
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHH---
Q 006762 322 LSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALS--- 398 (632)
Q Consensus 322 l~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~--- 398 (632)
|-.+|+--++|=.-|-=+|+-++|--.-.++|.+.++-+- |++.- -.-.++...+.-.+-++.+..
T Consensus 23 lE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~---------s~LkR--Enq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 23 LEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEY---------SALKR--ENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh---------hhhhh--hhhhHHHHHHHHHHHHHHhhHHHh
Confidence 3344444444444556667777776666666666665432 22211 222333333333333333322
Q ss_pred ----HHHHHHHHhhH----HhhhhhhHHHhhhhHHHHhhcCCCCcH
Q 006762 399 ----KILQLEKQLDA----KQKLEMEIEDLKGKLEVMKHLGDEDDA 436 (632)
Q Consensus 399 ----kil~LekqL~~----kQ~LELEi~qLkG~L~VmKh~~~~~d~ 436 (632)
.+-=||-||.. -..||-||.+++..|+=.-.-....|+
T Consensus 92 ~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~ 137 (307)
T PF10481_consen 92 VKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDV 137 (307)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 23345666643 457889999999999866554444443
No 271
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=22.97 E-value=1.9e+02 Score=21.84 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=28.2
Q ss_pred CChhhHhh-hcccCC-ceeeeeccCC-CCcceEEEEeCCChhchhhHH
Q 006762 140 DSGYWLKR-FAVFKP-VEVRIFWNEE-NPTAQAVVKFNNDWNGFMQAS 184 (632)
Q Consensus 140 ~s~~~L~d-~~~F~p-~kv~~l~~~~-Gh~G~aVV~F~~dw~Gf~nA~ 184 (632)
.+..+++. |+.|.+ ..+...+.+. .++|++.|.|.+. ..-..|.
T Consensus 11 ~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~-~~a~~a~ 57 (74)
T cd00590 11 VTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDE-EDAEKAL 57 (74)
T ss_pred cCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCH-HHHHHHH
Confidence 46778888 888764 3444444433 3588999999965 3444443
No 272
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=22.87 E-value=35 Score=27.25 Aligned_cols=13 Identities=31% Similarity=0.813 Sum_probs=7.8
Q ss_pred CeeeccCCCCCCc
Q 006762 38 GTLRCPFCSGKKK 50 (632)
Q Consensus 38 ~~~~CP~C~gkkk 50 (632)
..|+||-|...|.
T Consensus 33 ~~w~CP~C~a~K~ 45 (47)
T PF00301_consen 33 DDWVCPVCGAPKS 45 (47)
T ss_dssp TT-B-TTTSSBGG
T ss_pred CCCcCcCCCCccc
Confidence 4499999986543
No 273
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=22.85 E-value=1.1e+02 Score=23.57 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=19.2
Q ss_pred Hhh-hcccCCceeeeeccCCCCcceEEEEeCC
Q 006762 145 LKR-FAVFKPVEVRIFWNEENPTAQAVVKFNN 175 (632)
Q Consensus 145 L~d-~~~F~p~kv~~l~~~~Gh~G~aVV~F~~ 175 (632)
|.+ |+.|.++.-..+.... +|+|.|+|.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~ 30 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFAS 30 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESS
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECC
Confidence 455 8889876644443333 7899999974
No 274
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=22.82 E-value=1.3e+03 Score=27.30 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=45.5
Q ss_pred HhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHHH
Q 006762 251 KIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLA--RDNVRRILEEQEKLSCELET 328 (632)
Q Consensus 251 ~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a--~~~~~rI~~e~ekl~~eLe~ 328 (632)
.++++..+..++...|-..--+..-....+.-|.+.|||+-+|...-..==+|+-..+ -+..-.|+........+|++
T Consensus 196 eq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~a 275 (596)
T KOG4360|consen 196 EQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTA 275 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3445545555555555555555444455555555556555544332211111111111 11111223333333344555
Q ss_pred HHhhhHHHHHHHHHHHhhhHHHHHhh
Q 006762 329 KKKKLDSWSKQLNKREALTERERQKL 354 (632)
Q Consensus 329 k~~eL~~r~k~L~k~~~~~~~er~kL 354 (632)
..+||+-+--++-.-.+.++.|-++|
T Consensus 276 E~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 276 ELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566665555555555555444444
No 275
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=22.74 E-value=1.3e+03 Score=27.25 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=10.7
Q ss_pred hhHHhhhhhhHHHhhhhHH
Q 006762 407 LDAKQKLEMEIEDLKGKLE 425 (632)
Q Consensus 407 L~~kQ~LELEi~qLkG~L~ 425 (632)
++.-+.++.|+.+|.-+|.
T Consensus 397 ~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 397 LKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444556666666666654
No 276
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.68 E-value=2e+02 Score=26.28 Aligned_cols=34 Identities=24% Similarity=0.500 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhHH------hhhhhhHHHhhhhHHHHhh
Q 006762 396 ALSKILQLEKQLDAK------QKLEMEIEDLKGKLEVMKH 429 (632)
Q Consensus 396 ~~~kil~LekqL~~k------Q~LELEi~qLkG~L~VmKh 429 (632)
.-.++.++|.+++.= +.|+++|.+++|.+..|.-
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 467788888887654 7899999999999987754
No 277
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.38 E-value=1e+03 Score=25.91 Aligned_cols=39 Identities=26% Similarity=0.506 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHH
Q 006762 439 QKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARREL 484 (632)
Q Consensus 439 ~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~l 484 (632)
++++.+++.+|.+....++...+.-+ +.+.++++|++.+
T Consensus 224 ~~~l~e~~~~l~~l~~~I~~~~~~k~-------e~~~~I~~ae~~~ 262 (312)
T smart00787 224 VKKLEELEEELQELESKIEDLTNKKS-------ELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34455555555555554443333333 3346777777643
No 278
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=22.36 E-value=7.3e+02 Score=24.18 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006762 296 AFVEETRKMQRLARDNVRRILEEQEK 321 (632)
Q Consensus 296 ~yneE~rkmQ~~a~~~~~rI~~e~ek 321 (632)
.-|.|+.+|...+...++-+-+--+|
T Consensus 60 ERn~eL~~Lk~~~~~~v~~L~h~keK 85 (177)
T PF13870_consen 60 ERNKELLKLKKKIGKTVQILTHVKEK 85 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555554444444333333
No 279
>PHA00616 hypothetical protein
Probab=22.20 E-value=28 Score=27.59 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=16.0
Q ss_pred eeccCCCCCCcCccCchhHHhhhc
Q 006762 40 LRCPFCSGKKKQDYKHKDLLQHAS 63 (632)
Q Consensus 40 ~~CP~C~gkkk~~y~~~~LLqHA~ 63 (632)
|.||-|+.. +-..++|..|-.
T Consensus 2 YqC~~CG~~---F~~~s~l~~H~r 22 (44)
T PHA00616 2 YQCLRCGGI---FRKKKEVIEHLL 22 (44)
T ss_pred CccchhhHH---HhhHHHHHHHHH
Confidence 789999854 557788888853
No 280
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=22.16 E-value=49 Score=22.80 Aligned_cols=20 Identities=30% Similarity=0.791 Sum_probs=15.0
Q ss_pred eeeccCCCCCCcCccCchhHHhhh
Q 006762 39 TLRCPFCSGKKKQDYKHKDLLQHA 62 (632)
Q Consensus 39 ~~~CP~C~gkkk~~y~~~~LLqHA 62 (632)
...||.|.++ |....|-.|.
T Consensus 2 l~~C~~CgR~----F~~~~l~~H~ 21 (25)
T PF13913_consen 2 LVPCPICGRK----FNPDRLEKHE 21 (25)
T ss_pred CCcCCCCCCE----ECHHHHHHHH
Confidence 4679999866 6777777774
No 281
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=22.10 E-value=6.4e+02 Score=27.15 Aligned_cols=41 Identities=5% Similarity=-0.022 Sum_probs=19.9
Q ss_pred CCccccCChhhHhhhc-----ccCCceeeeeccCCCCcceEEEEeCCC
Q 006762 134 DRGSFLDSGYWLKRFA-----VFKPVEVRIFWNEENPTAQAVVKFNND 176 (632)
Q Consensus 134 dg~~~G~s~~~L~d~~-----~F~p~kv~~l~~~~Gh~G~aVV~F~~d 176 (632)
+|..--|++..+-.|. .-.|.+++ +.+..|-.| +.|.|++.
T Consensus 67 ~g~~k~mtn~t~mk~IeeVq~S~~~LrlT-C~~~~~s~G-v~l~fnGl 112 (264)
T PF07246_consen 67 SGDLKEMTNKTMMKIIEEVQLSISNLRLT-CIGSLGSEG-VSLDFNGL 112 (264)
T ss_pred CcchhhcchhhHHHHHHHHhcccccceee-ecCCCCcce-eEEecCCC
Confidence 4444445554444422 13344443 345556555 46677654
No 282
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=22.08 E-value=1.6e+03 Score=28.07 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 006762 310 DNVRRILEEQEKLSCELET 328 (632)
Q Consensus 310 ~~~~rI~~e~ekl~~eLe~ 328 (632)
.+..+.+...++|-..|++
T Consensus 896 ~~~d~~~~~~e~~~~~l~s 914 (1259)
T KOG0163|consen 896 SEYDVAVKNYEKLVKRLDS 914 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3333344444444444444
No 283
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.94 E-value=1.6e+02 Score=32.50 Aligned_cols=30 Identities=17% Similarity=0.413 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHhhHH
Q 006762 436 AAVQKKMKEMNDELESKIDDLDEMESLNKT 465 (632)
Q Consensus 436 ~~~~~k~~~l~~~l~ek~~el~~~e~~nq~ 465 (632)
..+..+|+++.+.+.+.++.++.++.-.+.
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~ 169 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKE 169 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHH
Confidence 345677777777777777766655544443
No 284
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.83 E-value=3.8e+02 Score=30.66 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=17.9
Q ss_pred HHhhHHHHHHHhhccHHHHHHHHHHH
Q 006762 460 ESLNKTLIAKERQSNDELQEARRELI 485 (632)
Q Consensus 460 e~~nq~L~~ker~sndELq~aRk~lI 485 (632)
..-..+|..+.+....+|+.++++|-
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 144 LTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777788888888764
No 285
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=21.71 E-value=8.9e+02 Score=28.55 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=24.5
Q ss_pred HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHH
Q 006762 409 AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQK 440 (632)
Q Consensus 409 ~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~ 440 (632)
.++.|+-..++++..+.-+|.++.+|-.-+..
T Consensus 238 ~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~ 269 (555)
T TIGR03545 238 AKNDLQNDKKQLKADLAELKKAPQNDLKRLEN 269 (555)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccHhHHHHHHH
Confidence 46678888899999999999998765444443
No 286
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.68 E-value=42 Score=36.03 Aligned_cols=23 Identities=35% Similarity=0.735 Sum_probs=17.1
Q ss_pred HHHhhhhcCCCCccccccccccc
Q 006762 585 LKELNEYNPSGRYVIPDLWNFKE 607 (632)
Q Consensus 585 l~E~neyN~sgry~v~elWN~ke 607 (632)
|-+++.=|=+|||.||+||+.|-
T Consensus 110 lY~~~~p~Y~grfTVPVLWD~k~ 132 (319)
T KOG2903|consen 110 LYYIASPNYTGRFTVPVLWDLKT 132 (319)
T ss_pred HHhhcCCCCCceEEEEEEEcccc
Confidence 33445556779999999999763
No 287
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=21.50 E-value=3.2e+02 Score=31.30 Aligned_cols=36 Identities=28% Similarity=0.540 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 006762 378 ADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKL 413 (632)
Q Consensus 378 ade~vlkLve~hkrEke~~~~kil~LekqL~~kQ~L 413 (632)
...++|+-+++-+++||+|+.-..+.|++|.+.+.+
T Consensus 38 eh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~ 73 (436)
T PF01093_consen 38 EHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEV 73 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888999999999999999999888764
No 288
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=21.43 E-value=1.8e+03 Score=28.45 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhh-hhhchhHhhHHHHHHhhHHHHHHHH
Q 006762 309 RDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQND-LRNNSLQLASMEQKKADENVLRLVE 387 (632)
Q Consensus 309 ~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~Ek~kn~-~~~~~L~lA~~EQ~kade~vlkLve 387 (632)
...+++-++.|.+|..+|...-.+++.=..+-.....+.+.-++-+..-+++-. .+.+.+=--++-||++.---....+
T Consensus 257 ~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~LP~~~~~~ 336 (1109)
T PRK10929 257 PKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALRAQVARLPEMPKPQ 336 (1109)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhCCCCcccc
Confidence 345777788899999999888887777666655555555555555443333322 2222222233444444333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhh
Q 006762 388 EQKREKEEALSKILQLEKQLDAKQK 412 (632)
Q Consensus 388 ~hkrEke~~~~kil~LekqL~~kQ~ 412 (632)
.-..+.-++.-+..++++|+|+-+.
T Consensus 337 ~l~~~IAdlRl~~f~~~q~~~~l~~ 361 (1109)
T PRK10929 337 QLDTEMAQLRVQRLRYEDLLNKQPQ 361 (1109)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445566666667777777776554
No 289
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=21.22 E-value=32 Score=42.06 Aligned_cols=71 Identities=27% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHH
Q 006762 409 AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRE 483 (632)
Q Consensus 409 ~kQ~LELEi~qLkG~L~VmKh~~~~~d~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~ 483 (632)
+|.+|.-.+..+...|+..+.--+ .+.+.-..|..++++-.-+|+...+.+..|-.|-|+-.-.|.+.+..
T Consensus 322 aKKkL~~~L~el~e~le~~~~~~~----~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~ 392 (859)
T PF01576_consen 322 AKKKLERKLQELQEQLEEANAKVS----SLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAK 392 (859)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455555555555555555544321 23334445666666666666666666667777666666666666554
No 290
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=21.01 E-value=40 Score=31.20 Aligned_cols=15 Identities=27% Similarity=0.820 Sum_probs=11.3
Q ss_pred cCCeeeccCCCCCCc
Q 006762 36 VNGTLRCPFCSGKKK 50 (632)
Q Consensus 36 ~~~~~~CP~C~gkkk 50 (632)
.+-+|.||||---+.
T Consensus 20 ldt~FnClfcnHek~ 34 (109)
T KOG3214|consen 20 LDTQFNCLFCNHEKS 34 (109)
T ss_pred hheeeccCccccccc
Confidence 456899999985543
No 291
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=20.82 E-value=4.7e+02 Score=29.43 Aligned_cols=55 Identities=31% Similarity=0.504 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHH
Q 006762 288 EEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNK 342 (632)
Q Consensus 288 eEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k 342 (632)
+++..+-..|.+.++.-++.....-++++.++..+...|+..-++|+...++|.+
T Consensus 313 ~~~~~~k~~~~~ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~ 367 (373)
T COG5019 313 EEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEK 367 (373)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555666666666666666666666666666666666665555555555543
No 292
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=20.68 E-value=7.5e+02 Score=23.66 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=28.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHH
Q 006762 283 LSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKRE 344 (632)
Q Consensus 283 L~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~ 344 (632)
+..++++-......++..+...--.--..+...+.+-.++...++.++-++|+-...+.+..
T Consensus 97 ~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~ 158 (229)
T PF03114_consen 97 FGEAMQEIEEARKELESQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARSKLEKLR 158 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433322111122224455555555666666666666555555444
No 293
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=20.65 E-value=43 Score=32.83 Aligned_cols=13 Identities=38% Similarity=0.981 Sum_probs=11.4
Q ss_pred cCCeeeccCCCCC
Q 006762 36 VNGTLRCPFCSGK 48 (632)
Q Consensus 36 ~~~~~~CP~C~gk 48 (632)
|+|.|+||.|..+
T Consensus 15 P~g~W~Cp~C~~~ 27 (148)
T cd04718 15 PEGDWICPFCEVE 27 (148)
T ss_pred CCCCcCCCCCcCC
Confidence 8899999999844
No 294
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=20.63 E-value=3.6e+02 Score=29.38 Aligned_cols=43 Identities=35% Similarity=0.402 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----hHHhhhhhhHHHhhhhHH
Q 006762 383 LRLVEEQKREKEEALSKILQLEKQL----DAKQKLEMEIEDLKGKLE 425 (632)
Q Consensus 383 lkLve~hkrEke~~~~kil~LekqL----~~kQ~LELEi~qLkG~L~ 425 (632)
.|.=++++.|+|+++..+..||+.= ++-+.||-||+.||--+.
T Consensus 240 tRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 240 TRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888999988888877653 345667777777765544
No 295
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=20.58 E-value=1.6e+02 Score=28.98 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=32.4
Q ss_pred hHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006762 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKK 330 (632)
Q Consensus 252 ~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e~ekl~~eLe~k~ 330 (632)
..+..+|...|...|-. ++.........|.++.++-.+-|-.-.+-..+++......++-++.+.+++-.+|...+
T Consensus 44 ~~~~~~l~eeik~~n~~---~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~ 119 (155)
T PF07464_consen 44 QNVSSSLQEEIKDANPE---AEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENS 119 (155)
T ss_dssp HHHHHHHHHHHTT-SST---HHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHhcChh---HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333 23333344444444443322223333333344445555566666667767666665443
No 296
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=20.50 E-value=5.1e+02 Score=27.88 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=9.2
Q ss_pred cHHHHHHHHHHHH
Q 006762 474 NDELQEARRELIQ 486 (632)
Q Consensus 474 ndELq~aRk~lI~ 486 (632)
.+||++|....+.
T Consensus 222 ~~el~~aK~~~~~ 234 (264)
T PF07246_consen 222 EHELSDAKEDMIR 234 (264)
T ss_pred HHHHHHHHHHHHH
Confidence 4788888777654
No 297
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=20.49 E-value=3.1e+02 Score=25.22 Aligned_cols=77 Identities=26% Similarity=0.396 Sum_probs=0.0
Q ss_pred hhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh----hhhhhHHHh
Q 006762 345 ALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQ----KLEMEIEDL 420 (632)
Q Consensus 345 ~~~~~er~kL~~Ek~kn~~~~~~L~lA~~EQ~kade~vlkLve~hkrEke~~~~kil~LekqL~~kQ----~LELEi~qL 420 (632)
......|..++.++.+-..+-..|--+=.++ .=+.|..-+++...+..+..+|+++|..+. .|..++..|
T Consensus 4 ~~e~~~r~~ae~~~~~ie~ElEeLTasLFeE------AN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~L 77 (100)
T PF06428_consen 4 EEERERREEAEQEKEQIESELEELTASLFEE------ANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKEL 77 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHH
Q 006762 421 KGKLEVM 427 (632)
Q Consensus 421 kG~L~Vm 427 (632)
+-.++-|
T Consensus 78 K~v~~~~ 84 (100)
T PF06428_consen 78 KTVMESM 84 (100)
T ss_dssp HHCTTT-
T ss_pred HHHHHHc
No 298
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=20.39 E-value=36 Score=26.41 Aligned_cols=20 Identities=35% Similarity=0.997 Sum_probs=13.3
Q ss_pred ee-cCCeeeccCCCCCCcCccCch
Q 006762 34 VR-VNGTLRCPFCSGKKKQDYKHK 56 (632)
Q Consensus 34 Vk-~~~~~~CP~C~gkkk~~y~~~ 56 (632)
++ ++| |.||.|... ..|.+.
T Consensus 13 ~RW~~g-~~CP~Cg~~--~~~~~~ 33 (46)
T PF12760_consen 13 IRWPDG-FVCPHCGST--KHYRLK 33 (46)
T ss_pred hcCCCC-CCCCCCCCe--eeEEeC
Confidence 46 677 889999754 345444
No 299
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=20.33 E-value=1.4e+03 Score=27.98 Aligned_cols=15 Identities=13% Similarity=0.248 Sum_probs=7.6
Q ss_pred hcCCCCccccccccc
Q 006762 591 YNPSGRYVIPDLWNF 605 (632)
Q Consensus 591 yN~sgry~v~elWN~ 605 (632)
|.-+-|....-.|+-
T Consensus 486 F~~NrRP~YyGTWrK 500 (811)
T KOG4364|consen 486 FDKNRRPGYYGTWRK 500 (811)
T ss_pred hccccCCcccccccc
Confidence 334455555555554
No 300
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.28 E-value=7.7e+02 Score=23.63 Aligned_cols=95 Identities=15% Similarity=0.245 Sum_probs=52.8
Q ss_pred CHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006762 239 TVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEE 318 (632)
Q Consensus 239 Ti~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~ne~t~sL~r~meEk~~lh~~yneE~rkmQ~~a~~~~~rI~~e 318 (632)
++||++---.|-...-++.+..+++.-..-|......+...-..|..-+++-..+.+.-.+|+-.++.... ++...++.
T Consensus 29 s~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~-~i~~dv~~ 107 (126)
T PF07889_consen 29 SFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVS-QIGDDVDS 107 (126)
T ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHH
Confidence 56777766666666666666666666666555555555555555666666666666666666655554322 12222222
Q ss_pred HHHhhHHHHHHHhhhH
Q 006762 319 QEKLSCELETKKKKLD 334 (632)
Q Consensus 319 ~ekl~~eLe~k~~eL~ 334 (632)
-...=..|+.|+.+|+
T Consensus 108 v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 108 VQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 2233334555555444
No 301
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.27 E-value=8.3e+02 Score=27.51 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhhccCCc--------ccccccccCCC
Q 006762 436 AAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGAR--------TNIGVKRLGEI 506 (632)
Q Consensus 436 ~~~~~k~~~l~~~l~ek~~el~~~e~~nq~L~~ker~sndELq~aRk~lI~~l~~~~~~~--------~~IgiKrmGel 506 (632)
.+++..+.+|.+++.+.+..+. ++++...++...+..++... .++=||+.|+.
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~------------------~~~~~~~~~~~~lPN~~~~~vP~g~~~~~n~~~~~~g~~ 132 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALK------------------ALEAELQDKLLSIPNIPHESVPVGKDEEDNLEVKRWGTP 132 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCcccCeEeeecCCC
Confidence 5667777777777777666663 56666666777777665322 34447777753
No 302
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=20.22 E-value=4.4e+02 Score=23.42 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=19.9
Q ss_pred HhhHHhhhhhhHHHhhhhHHHHhhc
Q 006762 406 QLDAKQKLEMEIEDLKGKLEVMKHL 430 (632)
Q Consensus 406 qL~~kQ~LELEi~qLkG~L~VmKh~ 430 (632)
..+...++-.+|+..+++..|+..|
T Consensus 2 ~~e~~~k~~~~l~~v~~~~~lL~em 26 (100)
T PF03127_consen 2 RPEQVSKRRSELEKVKNNAKLLNEM 26 (100)
T ss_dssp HHCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888999999888876
No 303
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=20.19 E-value=1e+03 Score=24.94 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=23.6
Q ss_pred cHHHHHHHH---HHHHhhhhccCC-cccccccccCCCCChhhHHHH
Q 006762 474 NDELQEARR---ELIQGLSDLIGA-RTNIGVKRLGEIDPKPFQDAC 515 (632)
Q Consensus 474 ndELq~aRk---~lI~~l~~~~~~-~~~IgiKrmGeld~kpf~~ac 515 (632)
|.+|+..-. .++.-+....++ ....+| -|-.+|..||+..|
T Consensus 134 ~~~l~~l~~~v~~l~~~~~~~~~~~~~~~~~-flsq~~l~~Y~~~e 178 (256)
T PF14932_consen 134 NNELNQLLGEVSKLASELAHAHSGQQQNPPV-FLSQMPLEQYLSQE 178 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCCc-hhhhCCHHHHHHHH
Confidence 344444443 334333332222 345666 88899999998876
No 304
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.09 E-value=3.2e+02 Score=31.69 Aligned_cols=18 Identities=6% Similarity=0.379 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhHHhhH
Q 006762 439 QKKMKEMNDELESKIDDL 456 (632)
Q Consensus 439 ~~k~~~l~~~l~ek~~el 456 (632)
..||++|+.++......+
T Consensus 103 e~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555444444
No 305
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=20.08 E-value=61 Score=35.64 Aligned_cols=28 Identities=32% Similarity=0.667 Sum_probs=20.0
Q ss_pred HHHhhhhhHHHhhcCCeEeecCCeeeccCCCCC
Q 006762 16 INEYLEKPYEELRAGKYKVRVNGTLRCPFCSGK 48 (632)
Q Consensus 16 i~~y~~k~y~~Lk~g~~kVk~~~~~~CP~C~gk 48 (632)
|-|..++||+.-+=| .+..||||.|..+
T Consensus 266 l~eC~~~f~~~e~L~-----g~d~W~CpkC~~k 293 (415)
T COG5533 266 LQECIDRFYEEEKLE-----GKDAWRCPKCGRK 293 (415)
T ss_pred HHHHHHHhhhHHhhc-----CcccccCchhccc
Confidence 456778888765433 4678999999743
Done!