Query 006763
Match_columns 632
No_of_seqs 281 out of 1441
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 14:08:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006763.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006763hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00429 beta-adaptin; Provisi 100.0 9E-116 2E-120 992.3 59.7 608 1-615 60-678 (746)
2 KOG1061 Vesicle coat complex A 100.0 1E-107 2E-112 889.1 46.3 547 1-551 41-588 (734)
3 KOG1060 Vesicle coat complex A 100.0 1.1E-81 2.4E-86 677.8 40.1 520 1-539 63-623 (968)
4 PF01602 Adaptin_N: Adaptin N 100.0 7.6E-77 1.6E-81 668.5 39.0 482 1-491 34-524 (526)
5 KOG1062 Vesicle coat complex A 100.0 2.6E-75 5.6E-80 632.5 45.0 495 3-511 64-600 (866)
6 KOG1077 Vesicle coat complex A 100.0 6.9E-71 1.5E-75 587.5 45.0 499 3-511 68-607 (938)
7 COG5096 Vesicle coat complex, 100.0 3E-68 6.5E-73 591.3 36.3 545 1-549 47-630 (757)
8 KOG1059 Vesicle coat complex A 100.0 4.1E-55 8.9E-60 469.0 36.6 478 3-490 66-576 (877)
9 KOG1058 Vesicle coat complex C 100.0 5.6E-46 1.2E-50 399.9 26.8 402 1-421 48-469 (948)
10 KOG1078 Vesicle coat complex C 100.0 2.7E-38 5.9E-43 343.3 33.5 465 6-490 61-531 (865)
11 COG5240 SEC21 Vesicle coat com 100.0 3.5E-35 7.6E-40 308.5 33.9 467 7-490 63-554 (898)
12 PF01602 Adaptin_N: Adaptin N 99.5 2.8E-12 6E-17 144.6 25.9 407 17-440 87-513 (526)
13 PTZ00429 beta-adaptin; Provisi 99.4 4.1E-09 8.9E-14 121.5 44.8 439 12-481 35-497 (746)
14 PRK09687 putative lyase; Provi 99.1 2.4E-09 5.2E-14 110.8 18.9 251 47-372 24-277 (280)
15 PRK13800 putative oxidoreducta 99.1 1.6E-08 3.5E-13 120.9 27.5 255 61-374 609-864 (897)
16 PRK13800 putative oxidoreducta 99.1 1E-08 2.2E-13 122.7 25.5 273 47-373 622-895 (897)
17 PLN03200 cellulose synthase-in 99.1 2.8E-07 6.1E-12 114.3 36.1 441 48-506 364-891 (2102)
18 PF12717 Cnd1: non-SMC mitotic 99.1 5E-09 1.1E-13 101.3 16.3 146 59-209 1-157 (178)
19 PLN03200 cellulose synthase-in 99.0 6.1E-07 1.3E-11 111.4 35.1 321 14-343 409-767 (2102)
20 PRK09687 putative lyase; Provi 99.0 1.4E-07 3E-12 97.7 24.9 191 13-225 27-219 (280)
21 KOG2171 Karyopherin (importin) 99.0 1.7E-05 3.6E-10 92.5 41.8 522 9-542 4-605 (1075)
22 KOG2171 Karyopherin (importin) 98.9 6E-06 1.3E-10 96.1 36.2 428 51-487 9-500 (1075)
23 PF10508 Proteasom_PSMB: Prote 98.8 2.3E-05 4.9E-10 88.1 36.9 285 51-339 43-365 (503)
24 KOG2023 Nuclear transport rece 98.7 7E-07 1.5E-11 97.8 20.1 408 64-494 376-821 (885)
25 KOG0212 Uncharacterized conser 98.7 8.2E-05 1.8E-09 80.7 34.1 359 14-378 5-407 (675)
26 KOG0166 Karyopherin (importin) 98.7 5.5E-06 1.2E-10 90.5 25.0 257 82-341 110-394 (514)
27 KOG2023 Nuclear transport rece 98.7 6.6E-06 1.4E-10 90.4 25.3 410 13-466 17-519 (885)
28 PF10508 Proteasom_PSMB: Prote 98.7 4.2E-06 9.1E-11 93.9 23.9 310 10-322 78-440 (503)
29 KOG1060 Vesicle coat complex A 98.6 5.9E-05 1.3E-09 84.5 29.7 279 55-349 44-359 (968)
30 KOG1059 Vesicle coat complex A 98.5 8.9E-05 1.9E-09 82.4 29.4 306 39-360 137-462 (877)
31 PF14764 SPG48: AP-5 complex s 98.4 0.00021 4.5E-09 77.4 27.2 127 371-500 291-454 (459)
32 KOG1058 Vesicle coat complex C 98.4 6E-05 1.3E-09 84.1 22.5 271 171-490 109-380 (948)
33 KOG0213 Splicing factor 3b, su 98.3 0.00076 1.6E-08 75.3 28.8 102 47-148 477-584 (1172)
34 KOG0166 Karyopherin (importin) 98.3 9.8E-05 2.1E-09 80.9 21.5 297 11-309 68-397 (514)
35 KOG1062 Vesicle coat complex A 98.2 0.00061 1.3E-08 76.9 25.8 176 87-273 76-267 (866)
36 KOG1020 Sister chromatid cohes 98.2 0.0044 9.5E-08 74.4 33.7 454 23-489 794-1403(1692)
37 PF13646 HEAT_2: HEAT repeats; 98.1 1.3E-05 2.8E-10 67.5 8.7 84 49-144 2-87 (88)
38 KOG1824 TATA-binding protein-i 98.1 0.025 5.4E-07 65.3 35.6 324 37-379 15-404 (1233)
39 PF05918 API5: Apoptosis inhib 98.1 0.0078 1.7E-07 67.3 31.0 135 10-149 24-162 (556)
40 COG5240 SEC21 Vesicle coat com 98.0 0.00042 9.1E-09 75.4 19.0 336 59-410 203-550 (898)
41 KOG4224 Armadillo repeat prote 97.9 0.00045 9.7E-09 71.6 16.6 253 14-270 90-364 (550)
42 PF05804 KAP: Kinesin-associat 97.9 0.0015 3.2E-08 75.4 22.6 346 57-415 261-652 (708)
43 KOG1241 Karyopherin (importin) 97.9 0.031 6.6E-07 63.4 31.2 494 10-542 260-822 (859)
44 KOG1078 Vesicle coat complex C 97.9 0.0028 6E-08 71.6 23.1 269 120-403 245-520 (865)
45 PF12717 Cnd1: non-SMC mitotic 97.8 0.00036 7.8E-09 67.4 13.1 93 253-345 1-98 (178)
46 KOG2259 Uncharacterized conser 97.7 0.0064 1.4E-07 67.6 22.6 341 43-392 118-526 (823)
47 PF04826 Arm_2: Armadillo-like 97.7 0.0025 5.3E-08 65.0 18.1 225 84-331 15-253 (254)
48 PF05804 KAP: Kinesin-associat 97.7 0.014 3.1E-07 67.5 26.0 366 123-498 253-657 (708)
49 COG5181 HSH155 U2 snRNP splice 97.7 0.0075 1.6E-07 66.5 22.2 436 48-492 283-871 (975)
50 KOG0213 Splicing factor 3b, su 97.7 0.075 1.6E-06 60.1 30.1 427 14-491 641-1139(1172)
51 KOG1824 TATA-binding protein-i 97.6 0.13 2.8E-06 59.7 31.9 416 60-491 628-1096(1233)
52 KOG1241 Karyopherin (importin) 97.6 0.074 1.6E-06 60.4 29.3 410 39-465 83-543 (859)
53 KOG1242 Protein containing ada 97.6 0.028 6E-07 62.6 25.8 265 3-271 128-446 (569)
54 TIGR02270 conserved hypothetic 97.6 0.0023 5E-08 69.8 17.4 91 47-150 87-177 (410)
55 KOG0212 Uncharacterized conser 97.6 0.089 1.9E-06 57.9 28.1 396 43-489 19-442 (675)
56 KOG0414 Chromosome condensatio 97.5 0.00053 1.1E-08 80.3 11.4 155 9-166 919-1080(1251)
57 COG5181 HSH155 U2 snRNP splice 97.5 0.091 2E-06 58.3 27.5 311 3-360 435-777 (975)
58 cd00020 ARM Armadillo/beta-cat 97.4 0.00051 1.1E-08 60.6 7.6 70 82-151 8-80 (120)
59 COG1413 FOG: HEAT repeat [Ener 97.4 0.0094 2E-07 63.3 18.5 184 10-224 44-239 (335)
60 COG5215 KAP95 Karyopherin (imp 97.4 0.072 1.6E-06 58.6 24.6 390 53-469 270-731 (858)
61 KOG1061 Vesicle coat complex A 97.3 0.022 4.7E-07 64.8 20.9 171 48-226 15-188 (734)
62 TIGR02270 conserved hypothetic 97.3 0.02 4.4E-07 62.5 20.1 249 67-376 45-295 (410)
63 cd00256 VATPase_H VATPase_H, r 97.3 0.059 1.3E-06 58.8 23.2 283 163-452 103-426 (429)
64 KOG1242 Protein containing ada 97.3 0.33 7.2E-06 54.3 29.0 300 45-357 95-420 (569)
65 KOG2259 Uncharacterized conser 97.3 0.1 2.2E-06 58.4 24.7 382 91-487 89-547 (823)
66 cd00020 ARM Armadillo/beta-cat 97.3 0.0007 1.5E-08 59.7 6.9 102 47-148 8-119 (120)
67 COG5096 Vesicle coat complex, 97.3 0.31 6.7E-06 56.5 29.6 170 48-225 20-193 (757)
68 PF12348 CLASP_N: CLASP N term 97.2 0.0047 1E-07 61.8 13.0 184 89-275 15-212 (228)
69 KOG0414 Chromosome condensatio 97.2 0.53 1.2E-05 56.2 30.8 148 5-152 266-431 (1251)
70 KOG1924 RhoA GTPase effector D 97.2 0.12 2.7E-06 58.6 24.4 24 474-503 416-439 (1102)
71 PF13646 HEAT_2: HEAT repeats; 97.2 0.002 4.4E-08 53.9 8.3 83 84-184 2-86 (88)
72 KOG0915 Uncharacterized conser 97.1 0.37 8E-06 58.8 28.9 369 81-494 956-1348(1702)
73 COG1413 FOG: HEAT repeat [Ener 97.1 0.074 1.6E-06 56.5 21.0 217 46-329 43-262 (335)
74 PF04826 Arm_2: Armadillo-like 97.0 0.015 3.2E-07 59.4 14.6 166 57-227 24-205 (254)
75 COG5064 SRP1 Karyopherin (impo 96.9 0.064 1.4E-06 55.6 17.4 142 195-339 240-397 (526)
76 KOG1240 Protein kinase contain 96.8 0.13 2.9E-06 61.1 20.9 217 47-271 463-727 (1431)
77 KOG0211 Protein phosphatase 2A 96.8 0.54 1.2E-05 54.9 25.8 413 72-490 228-663 (759)
78 COG5098 Chromosome condensatio 96.7 0.016 3.5E-07 64.7 12.3 132 20-151 273-417 (1128)
79 PF12348 CLASP_N: CLASP N term 96.7 0.0078 1.7E-07 60.2 9.4 138 14-151 58-208 (228)
80 KOG0946 ER-Golgi vesicle-tethe 96.7 0.81 1.7E-05 52.6 25.5 133 18-152 32-198 (970)
81 KOG1077 Vesicle coat complex A 96.6 1.8 3.9E-05 49.3 43.4 407 60-488 91-565 (938)
82 PF12755 Vac14_Fab1_bd: Vacuol 96.5 0.012 2.7E-07 50.8 7.9 66 75-140 21-88 (97)
83 PF05918 API5: Apoptosis inhib 96.5 0.38 8.3E-06 54.1 21.4 65 85-152 27-91 (556)
84 PF02985 HEAT: HEAT repeat; I 96.5 0.0049 1.1E-07 41.3 4.1 30 82-111 1-30 (31)
85 PF12719 Cnd3: Nuclear condens 96.4 0.11 2.3E-06 54.6 16.1 148 310-481 25-175 (298)
86 PF13513 HEAT_EZ: HEAT-like re 96.3 0.0098 2.1E-07 45.4 5.8 49 60-108 1-55 (55)
87 KOG1240 Protein kinase contain 96.3 0.2 4.2E-06 59.7 18.5 130 287-417 589-727 (1431)
88 COG5098 Chromosome condensatio 96.3 0.037 7.9E-07 62.0 12.1 163 21-190 908-1076(1128)
89 KOG1943 Beta-tubulin folding c 96.2 4.1 8.9E-05 48.6 28.9 246 75-358 335-592 (1133)
90 COG5064 SRP1 Karyopherin (impo 96.2 0.55 1.2E-05 48.9 18.9 218 48-268 159-397 (526)
91 PF12830 Nipped-B_C: Sister ch 96.1 0.052 1.1E-06 52.9 10.9 151 48-203 10-183 (187)
92 KOG1020 Sister chromatid cohes 96.1 5.7 0.00012 49.1 29.1 85 180-267 874-958 (1692)
93 KOG0413 Uncharacterized conser 96.0 0.41 8.8E-06 55.8 18.6 399 61-487 592-1069(1529)
94 KOG0915 Uncharacterized conser 96.0 1.8 3.8E-05 53.3 24.4 320 81-416 998-1348(1702)
95 PF12460 MMS19_C: RNAPII trans 95.9 1.8 3.9E-05 47.6 23.1 179 308-488 186-391 (415)
96 KOG4224 Armadillo repeat prote 95.9 2.1 4.5E-05 45.3 21.4 217 7-224 165-402 (550)
97 PF13513 HEAT_EZ: HEAT-like re 95.9 0.0094 2E-07 45.5 3.6 53 95-147 1-55 (55)
98 KOG1525 Sister chromatid cohes 95.9 7.1 0.00015 48.4 30.0 199 290-491 236-472 (1266)
99 KOG1820 Microtubule-associated 95.8 0.15 3.2E-06 60.0 14.7 197 74-272 246-446 (815)
100 PF12460 MMS19_C: RNAPII trans 95.7 0.31 6.8E-06 53.6 16.3 226 24-280 163-405 (415)
101 PF14500 MMS19_N: Dos2-interac 95.7 1.4 2.9E-05 45.4 19.7 164 192-357 74-255 (262)
102 KOG1248 Uncharacterized conser 95.7 7.2 0.00016 47.1 28.4 279 94-379 586-900 (1176)
103 KOG0168 Putative ubiquitin fus 95.6 1.6 3.4E-05 50.7 20.8 189 48-238 169-376 (1051)
104 COG5215 KAP95 Karyopherin (imp 95.5 5.3 0.00012 44.6 24.2 108 10-117 322-444 (858)
105 KOG1248 Uncharacterized conser 95.5 8.3 0.00018 46.6 27.9 208 174-382 629-861 (1176)
106 KOG2274 Predicted importin 9 [ 95.5 5.9 0.00013 46.5 25.1 297 76-380 444-783 (1005)
107 KOG0211 Protein phosphatase 2A 95.3 0.77 1.7E-05 53.7 17.8 257 8-270 397-665 (759)
108 KOG1822 Uncharacterized conser 95.2 1.8 3.9E-05 54.2 20.8 126 43-168 873-1007(2067)
109 KOG2025 Chromosome condensatio 95.1 8.4 0.00018 44.2 28.9 93 50-144 89-188 (892)
110 PF10363 DUF2435: Protein of u 95.0 0.091 2E-06 44.9 7.2 69 48-116 5-78 (92)
111 PF12719 Cnd3: Nuclear condens 95.0 1.1 2.3E-05 47.0 16.7 70 81-152 27-96 (298)
112 PF14664 RICTOR_N: Rapamycin-i 94.7 3.3 7.1E-05 44.8 19.7 206 248-454 33-272 (371)
113 KOG2759 Vacuolar H+-ATPase V1 94.6 8 0.00017 41.8 26.0 354 57-451 61-438 (442)
114 KOG4413 26S proteasome regulat 94.5 7.2 0.00016 40.8 25.5 149 75-226 76-242 (524)
115 smart00638 LPD_N Lipoprotein N 94.3 0.16 3.6E-06 58.2 9.3 120 22-147 410-543 (574)
116 KOG1517 Guanine nucleotide bin 94.1 1.4 3E-05 52.2 15.6 136 10-150 513-672 (1387)
117 KOG1924 RhoA GTPase effector D 93.9 16 0.00034 42.4 29.8 14 476-489 470-483 (1102)
118 COG5218 YCG1 Chromosome conden 93.4 2.9 6.3E-05 46.7 15.9 138 121-265 47-195 (885)
119 PF12755 Vac14_Fab1_bd: Vacuol 93.1 0.25 5.5E-06 42.6 6.1 57 97-153 2-60 (97)
120 KOG1943 Beta-tubulin folding c 93.0 26 0.00056 42.2 35.7 429 4-468 332-808 (1133)
121 PF10363 DUF2435: Protein of u 93.0 0.74 1.6E-05 39.4 8.7 81 83-170 5-86 (92)
122 KOG1949 Uncharacterized conser 92.8 2.1 4.6E-05 48.7 13.9 138 44-187 172-328 (1005)
123 KOG1525 Sister chromatid cohes 92.3 37 0.00081 42.4 25.0 191 199-394 260-470 (1266)
124 PF08167 RIX1: rRNA processing 91.8 1.5 3.4E-05 41.6 10.3 125 120-280 25-154 (165)
125 KOG0168 Putative ubiquitin fus 91.7 5.1 0.00011 46.7 15.6 182 201-383 170-373 (1051)
126 smart00638 LPD_N Lipoprotein N 91.7 8.8 0.00019 44.0 18.3 191 290-493 340-545 (574)
127 KOG2956 CLIP-associating prote 91.0 11 0.00023 41.4 16.5 184 92-282 298-491 (516)
128 KOG0567 HEAT repeat-containing 90.4 2.5 5.3E-05 42.9 10.3 90 47-146 188-277 (289)
129 KOG2933 Uncharacterized conser 90.4 4.8 0.0001 41.8 12.6 153 27-226 71-233 (334)
130 KOG1293 Proteins containing ar 90.1 20 0.00042 40.9 18.0 172 54-226 339-532 (678)
131 PF08713 DNA_alkylation: DNA a 89.9 0.7 1.5E-05 45.5 6.2 131 13-152 55-187 (213)
132 PF02985 HEAT: HEAT repeat; I 89.4 0.75 1.6E-05 30.6 4.1 29 121-149 1-29 (31)
133 KOG1949 Uncharacterized conser 89.3 2.9 6.3E-05 47.6 10.9 146 75-225 167-329 (1005)
134 KOG2062 26S proteasome regulat 89.3 1.1 2.3E-05 51.2 7.6 155 14-179 524-688 (929)
135 KOG2025 Chromosome condensatio 89.2 4 8.6E-05 46.7 11.8 134 8-146 84-256 (892)
136 PF01347 Vitellogenin_N: Lipop 89.1 0.41 8.8E-06 55.4 4.5 121 21-147 447-587 (618)
137 PF11698 V-ATPase_H_C: V-ATPas 88.9 0.77 1.7E-05 41.1 5.0 68 384-451 42-115 (119)
138 KOG2160 Armadillo/beta-catenin 88.8 8.7 0.00019 40.7 13.5 131 19-151 93-242 (342)
139 COG5218 YCG1 Chromosome conden 88.6 49 0.0011 37.5 28.3 125 25-151 28-163 (885)
140 KOG2160 Armadillo/beta-catenin 88.4 3.1 6.7E-05 44.0 9.9 106 84-190 127-240 (342)
141 KOG0946 ER-Golgi vesicle-tethe 88.3 25 0.00055 41.0 17.4 140 241-395 61-218 (970)
142 PF11864 DUF3384: Domain of un 88.1 49 0.0011 37.0 32.7 194 291-486 230-461 (464)
143 PF13251 DUF4042: Domain of un 88.1 5.9 0.00013 38.3 11.0 151 97-272 2-177 (182)
144 PF05536 Neurochondrin: Neuroc 88.0 55 0.0012 37.4 24.3 237 7-271 3-263 (543)
145 KOG0413 Uncharacterized conser 87.9 51 0.0011 39.4 19.6 130 24-154 946-1078(1529)
146 PF12830 Nipped-B_C: Sister ch 87.6 5.8 0.00013 38.5 10.8 134 309-454 6-143 (187)
147 PF05004 IFRD: Interferon-rela 87.6 40 0.00088 35.5 20.6 188 83-271 45-259 (309)
148 KOG4413 26S proteasome regulat 87.5 41 0.00088 35.4 21.7 209 18-226 91-332 (524)
149 PF14664 RICTOR_N: Rapamycin-i 87.3 16 0.00034 39.6 14.9 137 12-150 28-177 (371)
150 PF01603 B56: Protein phosphat 87.1 27 0.00059 38.3 16.9 187 314-501 136-342 (409)
151 PF02854 MIF4G: MIF4G domain; 86.6 23 0.00049 34.0 14.6 61 296-356 3-63 (209)
152 KOG1992 Nuclear export recepto 86.3 77 0.0017 37.4 20.5 243 42-328 452-716 (960)
153 KOG2956 CLIP-associating prote 85.9 25 0.00053 38.7 15.0 164 287-454 298-480 (516)
154 PLN03076 ARF guanine nucleotid 85.4 1.3E+02 0.0028 39.3 23.3 127 22-149 1110-1253(1780)
155 KOG0567 HEAT repeat-containing 85.1 1.5 3.3E-05 44.4 5.2 56 48-107 220-277 (289)
156 KOG2213 Apoptosis inhibitor 5/ 85.1 60 0.0013 35.0 17.1 64 258-321 42-106 (460)
157 cd06561 AlkD_like A new struct 85.0 11 0.00024 36.4 11.3 107 41-152 53-173 (197)
158 COG5116 RPN2 26S proteasome re 84.5 10 0.00023 42.4 11.6 131 10-152 482-618 (926)
159 PF01347 Vitellogenin_N: Lipop 83.9 23 0.0005 40.9 15.3 193 289-494 377-590 (618)
160 PF12765 Cohesin_HEAT: HEAT re 83.8 1.5 3.3E-05 31.6 3.4 40 104-143 2-41 (42)
161 PF08713 DNA_alkylation: DNA a 83.6 1.6 3.5E-05 42.9 4.9 68 50-117 124-191 (213)
162 PF08569 Mo25: Mo25-like; Int 83.3 68 0.0015 34.2 21.5 101 198-330 209-322 (335)
163 KOG2062 26S proteasome regulat 83.2 19 0.0004 41.7 13.1 136 4-152 479-621 (929)
164 PF03378 CAS_CSE1: CAS/CSE pro 83.0 75 0.0016 35.2 17.9 155 160-327 25-194 (435)
165 COG5116 RPN2 26S proteasome re 83.0 5.6 0.00012 44.4 8.8 127 13-147 519-648 (926)
166 KOG4653 Uncharacterized conser 82.3 84 0.0018 37.3 18.0 73 81-153 727-801 (982)
167 PF01603 B56: Protein phosphat 82.3 79 0.0017 34.7 17.7 90 61-150 109-205 (409)
168 PF11864 DUF3384: Domain of un 82.0 92 0.002 34.8 29.3 373 62-447 6-462 (464)
169 PF03224 V-ATPase_H_N: V-ATPas 81.8 29 0.00062 36.5 13.7 143 121-269 60-227 (312)
170 PF13001 Ecm29: Proteasome sta 81.6 35 0.00076 38.6 15.1 167 130-304 247-442 (501)
171 PF08167 RIX1: rRNA processing 81.6 9.8 0.00021 36.1 9.1 77 75-151 19-99 (165)
172 cd03561 VHS VHS domain family; 81.5 21 0.00046 32.5 11.0 88 27-114 18-116 (133)
173 PF14676 FANCI_S2: FANCI solen 81.0 9.3 0.0002 36.1 8.6 112 369-483 39-153 (158)
174 KOG1222 Kinesin associated pro 80.9 98 0.0021 34.4 23.9 92 287-378 516-622 (791)
175 cd03569 VHS_Hrs_Vps27p VHS dom 80.6 20 0.00043 33.2 10.5 82 29-110 24-114 (142)
176 PF11935 DUF3453: Domain of un 80.2 25 0.00055 35.5 12.1 128 89-226 1-144 (239)
177 KOG1243 Protein kinase [Genera 80.1 2.5 5.3E-05 48.3 5.1 102 10-111 331-438 (690)
178 KOG4500 Rho/Rac GTPase guanine 79.8 1E+02 0.0022 33.9 24.7 264 12-275 226-525 (604)
179 PF13001 Ecm29: Proteasome sta 79.8 23 0.0005 40.0 12.8 126 20-148 296-442 (501)
180 PF12231 Rif1_N: Rap1-interact 79.7 96 0.0021 33.6 20.6 170 99-268 152-351 (372)
181 PF00790 VHS: VHS domain; Int 78.0 19 0.00042 33.0 9.7 94 17-110 13-118 (140)
182 PF08389 Xpo1: Exportin 1-like 77.9 24 0.00051 32.0 10.3 51 95-148 2-53 (148)
183 cd06561 AlkD_like A new struct 77.4 3 6.6E-05 40.4 4.3 63 55-117 114-177 (197)
184 KOG4653 Uncharacterized conser 76.9 52 0.0011 38.9 14.2 63 54-116 735-803 (982)
185 smart00288 VHS Domain present 76.1 33 0.00072 31.3 10.5 89 23-111 14-112 (133)
186 PF11698 V-ATPase_H_C: V-ATPas 75.4 7.8 0.00017 34.7 5.9 66 84-149 46-115 (119)
187 KOG2038 CAATT-binding transcri 75.3 1.6E+02 0.0035 34.7 17.2 72 79-152 302-373 (988)
188 KOG1991 Nuclear transport rece 75.1 2E+02 0.0043 34.8 32.3 212 87-305 10-272 (1010)
189 KOG2032 Uncharacterized conser 74.5 23 0.0005 39.1 10.2 107 46-152 255-374 (533)
190 PF11865 DUF3385: Domain of un 74.1 17 0.00037 34.4 8.3 35 39-76 7-41 (160)
191 cd03568 VHS_STAM VHS domain fa 73.7 25 0.00055 32.6 9.1 82 29-110 20-110 (144)
192 KOG1967 DNA repair/transcripti 72.6 25 0.00054 41.7 10.4 246 44-298 731-1017(1030)
193 PF08506 Cse1: Cse1; InterPro 72.6 7.9 0.00017 41.9 6.4 63 43-105 302-370 (370)
194 PF12074 DUF3554: Domain of un 72.2 83 0.0018 33.4 14.1 68 43-110 19-90 (339)
195 PF12765 Cohesin_HEAT: HEAT re 72.2 4.7 0.0001 29.0 3.1 24 81-104 18-41 (42)
196 PF10521 DUF2454: Protein of u 70.7 93 0.002 32.2 13.6 74 75-148 113-202 (282)
197 PF00514 Arm: Armadillo/beta-c 70.3 8.8 0.00019 27.0 4.2 28 82-109 13-40 (41)
198 KOG1048 Neural adherens juncti 70.1 2.2E+02 0.0048 33.4 17.2 69 83-151 235-306 (717)
199 KOG2032 Uncharacterized conser 69.9 1.9E+02 0.0041 32.3 18.5 147 79-225 256-414 (533)
200 COG5656 SXM1 Importin, protein 68.8 2.4E+02 0.0053 33.2 30.3 111 59-169 429-550 (970)
201 PF08506 Cse1: Cse1; InterPro 68.8 52 0.0011 35.6 11.5 127 94-221 223-369 (370)
202 PF11838 ERAP1_C: ERAP1-like C 68.4 88 0.0019 32.5 13.2 97 289-394 168-264 (324)
203 PF12530 DUF3730: Protein of u 68.2 1.4E+02 0.003 30.0 17.3 131 19-151 11-153 (234)
204 PF11701 UNC45-central: Myosin 68.2 18 0.00039 34.0 7.0 55 92-147 16-70 (157)
205 PF10274 ParcG: Parkin co-regu 67.0 55 0.0012 31.7 10.0 88 81-170 38-129 (183)
206 PF09759 Atx10homo_assoc: Spin 66.2 20 0.00044 31.2 6.3 62 439-502 3-70 (102)
207 PF08623 TIP120: TATA-binding 65.7 11 0.00023 36.0 4.9 59 93-152 39-97 (169)
208 PF00514 Arm: Armadillo/beta-c 65.4 9.4 0.0002 26.8 3.5 31 118-148 10-40 (41)
209 PF14500 MMS19_N: Dos2-interac 65.3 1.7E+02 0.0037 30.1 18.2 202 249-455 8-241 (262)
210 KOG2274 Predicted importin 9 [ 65.1 3.1E+02 0.0067 33.0 28.5 220 41-271 444-691 (1005)
211 PLN03076 ARF guanine nucleotid 63.9 2.8E+02 0.0061 36.4 18.1 134 208-341 1147-1300(1780)
212 PF03224 V-ATPase_H_N: V-ATPas 63.2 97 0.0021 32.5 12.2 156 59-225 53-225 (312)
213 KOG1820 Microtubule-associated 61.9 1.8E+02 0.0039 34.9 14.9 175 47-227 254-443 (815)
214 PF12074 DUF3554: Domain of un 61.5 2.2E+02 0.0048 30.1 18.3 109 62-171 3-113 (339)
215 PF13251 DUF4042: Domain of un 61.4 27 0.00059 33.8 6.9 119 25-149 18-174 (182)
216 PF08631 SPO22: Meiosis protei 60.7 2.1E+02 0.0044 29.5 16.2 108 254-362 80-193 (278)
217 KOG2051 Nonsense-mediated mRNA 60.4 3.6E+02 0.0077 33.0 16.7 81 401-483 520-606 (1128)
218 KOG2137 Protein kinase [Signal 58.5 3.6E+02 0.0078 31.6 16.6 248 77-342 236-498 (700)
219 PF14631 FancD2: Fanconi anaem 57.8 1.8E+02 0.0038 37.4 14.8 149 76-226 430-586 (1426)
220 KOG2933 Uncharacterized conser 57.8 13 0.00028 38.8 4.1 50 58-107 182-231 (334)
221 cd07064 AlkD_like_1 A new stru 57.6 1.2E+02 0.0027 29.8 11.1 66 84-153 118-183 (208)
222 KOG2038 CAATT-binding transcri 57.3 3.3E+02 0.0073 32.2 15.3 125 20-149 281-409 (988)
223 cd03567 VHS_GGA VHS domain fam 57.2 78 0.0017 29.2 8.9 55 99-156 19-73 (139)
224 PF14631 FancD2: Fanconi anaem 56.4 5.5E+02 0.012 33.1 26.1 96 120-224 192-288 (1426)
225 KOG1991 Nuclear transport rece 56.1 4.5E+02 0.0098 32.0 30.5 114 58-173 430-559 (1010)
226 smart00543 MIF4G Middle domain 56.1 1.8E+02 0.004 27.5 17.0 137 300-451 8-155 (200)
227 KOG2199 Signal transducing ada 56.0 76 0.0017 34.2 9.5 95 12-106 11-114 (462)
228 PF10274 ParcG: Parkin co-regu 55.7 25 0.00053 34.1 5.5 51 77-129 76-126 (183)
229 KOG2213 Apoptosis inhibitor 5/ 54.9 3.1E+02 0.0068 29.8 30.1 79 12-91 28-106 (460)
230 KOG2973 Uncharacterized conser 54.9 1.1E+02 0.0024 32.1 10.2 57 51-109 8-70 (353)
231 PF07539 DRIM: Down-regulated 54.8 70 0.0015 29.6 8.2 50 78-132 14-63 (141)
232 PF09759 Atx10homo_assoc: Spin 54.7 39 0.00084 29.5 6.0 60 327-386 2-68 (102)
233 PF03130 HEAT_PBS: PBS lyase H 52.6 21 0.00046 22.8 3.1 26 62-87 1-26 (27)
234 PF05004 IFRD: Interferon-rela 51.3 3.2E+02 0.0069 28.8 16.8 107 381-489 125-255 (309)
235 PF12530 DUF3730: Protein of u 51.2 2.7E+02 0.0058 27.9 17.2 159 56-221 11-183 (234)
236 KOG2005 26S proteasome regulat 49.9 1E+02 0.0022 35.6 9.7 117 59-189 621-742 (878)
237 cd03568 VHS_STAM VHS domain fa 49.4 2.2E+02 0.0047 26.4 11.3 85 249-361 46-132 (144)
238 cd00238 ERp29c ERp29 and ERp38 49.2 1.3E+02 0.0029 25.6 8.4 63 314-378 5-72 (93)
239 KOG2137 Protein kinase [Signal 48.6 2.5E+02 0.0054 32.8 12.7 205 251-455 284-500 (700)
240 cd03567 VHS_GGA VHS domain fam 48.1 1.4E+02 0.003 27.5 9.0 79 31-109 23-115 (139)
241 PF10521 DUF2454: Protein of u 47.0 1.2E+02 0.0026 31.4 9.5 38 235-272 113-151 (282)
242 PF05327 RRN3: RNA polymerase 46.8 2.9E+02 0.0064 31.7 13.4 46 423-469 163-210 (563)
243 PF12231 Rif1_N: Rap1-interact 46.5 4.1E+02 0.0089 28.7 19.7 160 198-378 90-263 (372)
244 PF14961 BROMI: Broad-minded p 46.5 1.7E+02 0.0038 36.2 11.5 68 49-116 164-237 (1296)
245 COG5369 Uncharacterized conser 45.7 73 0.0016 35.8 7.7 143 81-224 431-591 (743)
246 PF09324 DUF1981: Domain of un 45.7 82 0.0018 26.4 6.5 66 78-144 14-83 (86)
247 smart00185 ARM Armadillo/beta- 45.5 35 0.00076 23.2 3.7 27 82-108 13-39 (41)
248 cd03569 VHS_Hrs_Vps27p VHS dom 45.4 1.7E+02 0.0037 27.0 9.2 65 86-153 9-73 (142)
249 KOG2149 Uncharacterized conser 45.2 1.9E+02 0.0041 31.4 10.5 68 85-152 62-131 (393)
250 PF04388 Hamartin: Hamartin pr 44.6 2.9E+02 0.0063 32.5 13.1 102 46-153 39-144 (668)
251 cd03561 VHS VHS domain family; 44.0 1E+02 0.0022 28.0 7.4 52 99-153 18-69 (133)
252 KOG1243 Protein kinase [Genera 43.9 5.9E+02 0.013 29.8 16.1 162 8-191 250-419 (690)
253 PF07749 ERp29: Endoplasmic re 43.8 1.2E+02 0.0026 25.9 7.4 58 318-377 12-73 (95)
254 KOG1517 Guanine nucleotide bin 43.2 96 0.0021 37.7 8.5 99 13-111 603-733 (1387)
255 cd00197 VHS_ENTH_ANTH VHS, ENT 43.2 1.7E+02 0.0036 25.6 8.6 65 86-152 5-69 (115)
256 PF08767 CRM1_C: CRM1 C termin 43.2 1.1E+02 0.0025 32.2 8.8 182 291-490 42-244 (319)
257 cd00197 VHS_ENTH_ANTH VHS, ENT 43.0 2E+02 0.0044 25.0 9.1 51 23-73 14-64 (115)
258 cd08050 TAF6 TATA Binding Prot 42.9 3.3E+02 0.0071 29.1 12.2 140 8-148 177-339 (343)
259 KOG4535 HEAT and armadillo rep 42.3 1.8E+02 0.0038 32.5 9.8 157 91-270 6-180 (728)
260 KOG2973 Uncharacterized conser 42.1 1.6E+02 0.0034 31.0 9.0 65 84-150 6-72 (353)
261 KOG1923 Rac1 GTPase effector F 41.4 58 0.0013 37.9 6.3 8 604-611 315-322 (830)
262 PF00790 VHS: VHS domain; Int 41.1 1.6E+02 0.0034 26.9 8.4 52 98-151 22-73 (140)
263 smart00567 EZ_HEAT E-Z type HE 41.0 30 0.00064 22.4 2.5 24 61-84 2-25 (30)
264 cd03572 ENTH_epsin_related ENT 40.1 1.2E+02 0.0026 27.3 7.1 49 179-227 19-67 (122)
265 KOG0891 DNA-dependent protein 39.3 1E+03 0.022 32.4 17.6 267 65-339 463-762 (2341)
266 PF07539 DRIM: Down-regulated 39.2 61 0.0013 30.0 5.2 44 49-93 20-63 (141)
267 KOG1993 Nuclear transport rece 38.3 7.7E+02 0.017 29.5 22.1 329 78-478 432-799 (978)
268 PF11935 DUF3453: Domain of un 37.0 4.5E+02 0.0098 26.4 15.7 146 207-360 2-165 (239)
269 PF07462 MSP1_C: Merozoite sur 36.5 65 0.0014 36.1 5.6 8 445-452 159-166 (574)
270 PF14676 FANCI_S2: FANCI solen 36.3 3.3E+02 0.0072 25.7 9.7 110 295-405 37-151 (158)
271 KOG4535 HEAT and armadillo rep 36.1 43 0.00094 37.0 4.1 130 18-150 21-180 (728)
272 smart00802 UME Domain in UVSB 36.0 3E+02 0.0065 24.1 8.9 47 312-358 12-62 (107)
273 smart00185 ARM Armadillo/beta- 35.9 60 0.0013 22.0 3.7 29 120-148 12-40 (41)
274 PF11707 Npa1: Ribosome 60S bi 35.6 5.6E+02 0.012 27.1 13.1 98 49-146 59-184 (330)
275 KOG4500 Rho/Rac GTPase guanine 35.2 6.6E+02 0.014 27.9 20.2 99 119-217 314-421 (604)
276 PF05327 RRN3: RNA polymerase 34.6 4.6E+02 0.0099 30.1 12.5 110 305-416 68-197 (563)
277 PF08389 Xpo1: Exportin 1-like 34.5 76 0.0017 28.5 5.2 59 75-133 80-139 (148)
278 KOG0889 Histone acetyltransfer 34.3 1.6E+03 0.034 31.9 21.3 67 46-112 927-1015(3550)
279 KOG2286 Exocyst complex subuni 34.0 3E+02 0.0065 32.2 10.6 66 338-403 576-641 (667)
280 PF07571 DUF1546: Protein of u 33.9 1.5E+02 0.0033 25.1 6.4 59 91-149 16-78 (92)
281 cd00871 PI4Ka Phosphoinositide 33.8 68 0.0015 30.9 4.7 39 59-97 84-122 (175)
282 PF00613 PI3Ka: Phosphoinositi 33.1 1.6E+02 0.0035 28.4 7.3 92 24-130 28-121 (184)
283 PF14663 RasGEF_N_2: Rapamycin 32.9 82 0.0018 27.9 4.8 30 122-151 10-39 (115)
284 PF08568 Kinetochor_Ybp2: Unch 32.5 4.4E+02 0.0096 30.7 12.2 67 78-148 439-506 (633)
285 KOG3723 PH domain protein Melt 31.9 3.7E+02 0.0081 30.6 10.3 61 375-435 226-287 (851)
286 PTZ00479 RAP Superfamily; Prov 31.2 7.5E+02 0.016 27.3 16.2 102 120-225 83-184 (435)
287 PF03378 CAS_CSE1: CAS/CSE pro 30.9 5.3E+02 0.011 28.6 11.7 172 49-226 33-231 (435)
288 KOG4199 Uncharacterized conser 30.8 3E+02 0.0066 29.4 9.0 120 29-153 230-363 (461)
289 KOG2011 Sister chromatid cohes 30.6 4.4E+02 0.0094 32.5 11.5 156 253-423 300-459 (1048)
290 KOG4524 Uncharacterized conser 30.3 5.2E+02 0.011 31.4 11.8 75 77-152 799-879 (1014)
291 cd07064 AlkD_like_1 A new stru 28.9 1.3E+02 0.0029 29.6 6.1 66 53-118 122-187 (208)
292 PF12333 Ipi1_N: Rix1 complex 28.7 1.3E+02 0.0028 26.1 5.2 50 78-127 8-57 (102)
293 PTZ00479 RAP Superfamily; Prov 28.7 8.3E+02 0.018 27.0 13.3 79 371-453 106-188 (435)
294 KOG1967 DNA repair/transcripti 27.9 1.2E+03 0.025 28.5 24.1 75 285-359 226-304 (1030)
295 KOG0392 SNF2 family DNA-depend 27.5 4.8E+02 0.01 32.8 11.0 57 79-136 814-870 (1549)
296 KOG2675 Adenylate cyclase-asso 27.5 52 0.0011 35.8 3.0 9 478-486 163-171 (480)
297 cd00864 PI3Ka Phosphoinositide 27.4 2.5E+02 0.0055 26.2 7.4 15 93-107 83-97 (152)
298 KOG2085 Serine/threonine prote 27.0 5.9E+02 0.013 28.0 10.6 22 466-488 346-367 (457)
299 KOG1684 Enoyl-CoA hydratase [L 26.7 2.2E+02 0.0047 30.6 7.2 50 288-337 257-307 (401)
300 PF06025 DUF913: Domain of Unk 26.3 8.6E+02 0.019 26.4 13.7 59 95-153 70-142 (379)
301 smart00145 PI3Ka Phosphoinosit 25.9 3.1E+02 0.0066 26.6 7.8 95 22-130 24-120 (184)
302 PF13981 SopA: SopA-like centr 25.7 2E+02 0.0044 26.4 6.2 53 436-489 67-121 (135)
303 COG5593 Nucleic-acid-binding p 25.2 8.8E+02 0.019 27.5 11.7 90 252-344 169-261 (821)
304 KOG2374 Uncharacterized conser 24.9 2.3E+02 0.0049 31.6 7.2 85 308-395 7-91 (661)
305 KOG2759 Vacuolar H+-ATPase V1 24.8 1.2E+02 0.0026 33.1 5.1 70 81-150 366-439 (442)
306 PF12031 DUF3518: Domain of un 24.8 4.4E+02 0.0095 26.9 8.7 22 290-311 138-160 (257)
307 PF14837 INTS5_N: Integrator c 24.2 6E+02 0.013 25.3 9.5 31 311-341 3-33 (213)
308 PF12612 TFCD_C: Tubulin foldi 24.0 6.5E+02 0.014 24.2 10.4 37 75-111 1-37 (193)
309 cd03572 ENTH_epsin_related ENT 23.9 2.3E+02 0.0051 25.5 6.1 47 335-381 25-71 (122)
310 PF11701 UNC45-central: Myosin 23.6 1.4E+02 0.0029 28.1 4.8 91 58-148 17-116 (157)
311 cd00872 PI3Ka_I Phosphoinositi 23.3 2.5E+02 0.0055 26.8 6.6 94 22-130 20-115 (171)
312 PF12054 DUF3535: Domain of un 23.1 1.1E+03 0.023 26.3 15.6 44 444-489 296-340 (441)
313 KOG2753 Uncharacterized conser 23.0 9.4E+02 0.02 25.7 11.1 119 313-453 18-137 (378)
314 KOG1848 Uncharacterized conser 23.0 6.1E+02 0.013 32.2 10.9 54 77-130 993-1050(1610)
315 PHA02962 hypothetical protein; 22.3 1.1E+03 0.024 27.7 12.2 52 408-469 380-434 (722)
316 PF12238 MSA-2c: Merozoite sur 22.0 1.8E+02 0.0039 28.7 5.3 6 620-625 196-201 (205)
317 PF11865 DUF3385: Domain of un 21.8 6.7E+02 0.014 23.5 9.6 31 246-276 15-47 (160)
318 KOG4524 Uncharacterized conser 21.5 1.5E+03 0.034 27.6 25.8 136 331-468 568-721 (1014)
319 PF04078 Rcd1: Cell differenti 21.3 9.1E+02 0.02 24.8 10.6 27 290-317 110-136 (262)
320 COG5110 RPN1 26S proteasome re 21.3 6.1E+02 0.013 28.9 9.6 115 45-170 595-719 (881)
321 smart00288 VHS Domain present 21.3 4.2E+02 0.0091 24.0 7.4 27 420-446 35-61 (133)
322 PF08569 Mo25: Mo25-like; Int 21.2 1E+03 0.022 25.4 28.3 111 252-391 176-296 (335)
323 PF08146 BP28CT: BP28CT (NUC21 21.0 2.1E+02 0.0045 26.8 5.4 64 436-499 35-101 (153)
324 KOG1293 Proteins containing ar 20.9 1.4E+03 0.03 26.7 33.2 33 82-114 96-129 (678)
325 PF06239 ECSIT: Evolutionarily 20.8 4.2E+02 0.0092 26.6 7.6 105 305-416 46-154 (228)
326 KOG2005 26S proteasome regulat 20.4 5.6E+02 0.012 29.9 9.3 96 48-147 417-516 (878)
327 PF11841 DUF3361: Domain of un 20.1 7.5E+02 0.016 23.4 14.4 103 123-226 14-130 (160)
No 1
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=8.8e-116 Score=992.30 Aligned_cols=608 Identities=36% Similarity=0.637 Sum_probs=547.6
Q ss_pred CCCCCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHH
Q 006763 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (632)
Q Consensus 1 mtlG~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~ 80 (632)
||+|+|+|++|++|+++++|+|+++|||+|+|+++|++.+||+++|+||+|+||++|+||++||+|||+||+|+.+++++
T Consensus 60 mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e 139 (746)
T PTZ00429 60 MTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLE 139 (746)
T ss_pred HHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccH
Q 006763 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (632)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~ 160 (632)
++.++|++++.|++|||||+|++|++|+|+.+|+.+++.+|.+.|.+||.|+||+|++||+.+|++|+..++. .+.+.+
T Consensus 140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~-~l~l~~ 218 (746)
T PTZ00429 140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE-KIESSN 218 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch-hhHHHH
Confidence 9999999999999999999999999999999999998778999999999999999999999999999987763 478889
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHH
Q 006763 161 HTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240 (632)
Q Consensus 161 ~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~ 240 (632)
+.+++|++.+++++||+|+++|++|.+|.|.+.+++.++++.+.++|+|+|+||+++|+|+++++.++. +++.++++++
T Consensus 219 ~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~~~~~~~~~~ 297 (746)
T PTZ00429 219 EWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC-SQELIERCTV 297 (746)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987644 4678888888
Q ss_pred hcccchhhhccCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhh
Q 006763 241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYA 320 (632)
Q Consensus 241 ~~~~~L~~Lls~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl 320 (632)
++.++|++|+++++|+||++|++|..|++++|.+|++|++.|||+++||.|||++||++|+.|+|++|+..|++||.+|+
T Consensus 298 rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa 377 (746)
T PTZ00429 298 RVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYA 377 (746)
T ss_pred HHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHh
Confidence 99999999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHHhh--ccCC
Q 006763 321 TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESL--DTLD 398 (632)
Q Consensus 321 ~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l--~~i~ 398 (632)
++.|.+|++++|++||+||.|++..++||+++|+++++.+++++ .+++.++++|+|+||+.+ ++..|++.+ +.+.
T Consensus 378 ~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~~--il~~L~~~~~~~~i~ 454 (746)
T PTZ00429 378 SGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPELL--MLDTLVTDYGADEVV 454 (746)
T ss_pred hcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccHH--HHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999877765 478999999999999864 788888765 7889
Q ss_pred hhhHHHHHHHHHhcccCccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHH
Q 006763 399 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 478 (632)
Q Consensus 399 ~p~a~~~~iWiLGEy~~~i~~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dv 478 (632)
+|++|++++||+|||++.+++++++|+.++++|.+|+++||+++||+++|+|+++|++ .+++++++|+++++++.|+||
T Consensus 455 e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~~~~l~~vL~~~t~~~~d~DV 533 (746)
T PTZ00429 455 EEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-MEPQLNRVLETVTTHSDDPDV 533 (746)
T ss_pred cHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHhcCCChhH
Confidence 9999999999999999999999999999999999999999999999999999999976 899999999999888899999
Q ss_pred HhhHHHHHHHhcCCH--HHHHhhhccCCCCCCCCCCcCCHHHHHHHHHhcCccccccccChhhhhccccccCCCCCCCCC
Q 006763 479 RDRAYIYWRLLSTDP--EAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDY 556 (632)
Q Consensus 479 rdRA~~y~~LL~~~~--~~~~~ivl~~~p~~~~~~~~~~~~~l~~l~~~~~tls~vy~kp~~~~~~~~~~~~~~~~~~~~ 556 (632)
||||++|||||+.++ +.+++|+++++|++...+...|+.++++|+.+|||+||||+||+++|+++......+++||+.
T Consensus 534 RDRA~~Y~rLLs~~~~~~~a~~iv~~~~~~i~~~~~~~d~~~l~~L~~~~~tlssvY~kp~~~f~~~~~~~~~~~~~~~~ 613 (746)
T PTZ00429 534 RDRAFAYWRLLSKGITVAQMKKVVHGQMVPVNVDSTFSDAMTMADLKKSLNTAAIVFARPYQSFLPPYGLADVELDEEDT 613 (746)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcCceeeeecCCHHHhcCchhccccccccccc
Confidence 999999999999875 668999999999987766678888999999999999999999999999988877766544444
Q ss_pred CCCCCCCCCCCCCCcCcCCCCCCCCCCCCC-------cccCCCCCCCCCCCCCCCCCCccccccCC
Q 006763 557 PNGSEQGYSDAPTHVADEGASPQTSSSNAP-------YAATRQPAPPPAAPVSPPVPDLLGDLIGL 615 (632)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (632)
..++++.....+.-+.+.++ |.++...++ +.++++|+|..+.++...-.|++||+|||
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (746)
T PTZ00429 614 EDDDAVELPSTPSMGTQDGS-PAPSAAPAGYDIFEFAGDGTGAPHPVASGSNGAQHADPLGDLFSG 678 (746)
T ss_pred cchhhccCCCCCCCCCCCCC-CCcccccccchhhhhcccCCCCCCccccCCccccccCcHHHHhcC
Confidence 44444433333333334233 333333332 33444454443334444556788999998
No 2
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-107 Score=889.13 Aligned_cols=547 Identities=71% Similarity=1.121 Sum_probs=531.6
Q ss_pred CCCCCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHH
Q 006763 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (632)
Q Consensus 1 mtlG~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~ 80 (632)
||+|+|||.+|++|+|++++.|+++|||+|||+++|+..+|+++++++|+|.||+.|+||.+|++|+|+|++++.+.+.+
T Consensus 41 Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~e 120 (734)
T KOG1061|consen 41 MTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITE 120 (734)
T ss_pred CccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCC-Cchhcc
Q 006763 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEIT 159 (632)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~-~~~~l~ 159 (632)
++..++.++++|.+|||||+|+.|+.|+|+.+++.+++.++++.|++++.|.||.|++||+++|.+|.+..+. ..+.++
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~ 200 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN 200 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988763 667889
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHH
Q 006763 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC 239 (632)
Q Consensus 160 ~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~ 239 (632)
+..++++++.+++|+||+|+.+|+.++.|.|.++.+++++++++.++|+|.|++|++.++|++++..+++. +....+.
T Consensus 201 ~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~--~~~~~~~ 278 (734)
T KOG1061|consen 201 PQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLK--QVNELLF 278 (734)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH--HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999877653 3556788
Q ss_pred HhcccchhhhccCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHh
Q 006763 240 KKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEY 319 (632)
Q Consensus 240 ~~~~~~L~~Lls~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~y 319 (632)
+|+.++|++++++.++++|++|+++..+.++.|++|+.++++|||.|+||+|||..||+++..+++.+|+.+|+.||.+|
T Consensus 279 ~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eY 358 (734)
T KOG1061|consen 279 KKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEY 358 (734)
T ss_pred HHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence 89999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHHhhccCCh
Q 006763 320 ATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDE 399 (632)
Q Consensus 320 l~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~ 399 (632)
+++.|.+|++++|++||+||.|+++. ..|+++++++++.+.+|+++|++.++++++|+||+.++.++..++..++.+++
T Consensus 359 atevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~e 437 (734)
T KOG1061|consen 359 ATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQE 437 (734)
T ss_pred hhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCC
Confidence 99999999999999999999999887 88999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcccCccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHH
Q 006763 400 PEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLR 479 (632)
Q Consensus 400 p~a~~~~iWiLGEy~~~i~~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dvr 479 (632)
|++|++++||+|||++.+++++++|+.|+++|.+|+.+||+++|||++|+|+++|.+ .+++++.+|.+|+.+++|+|+|
T Consensus 438 peak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~-tq~~l~~vL~~~~~d~~~~dlr 516 (734)
T KOG1061|consen 438 PEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTE-TQELLQGVLPLATADTDNPDLR 516 (734)
T ss_pred hHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHhhhhccccChhhh
Confidence 999999999999999999999999999999999999999999999999999999986 9999999999999999999999
Q ss_pred hhHHHHHHHhcCCHHHHHhhhccCCCCCCCCCCcCCHHHHHHHHHhcCccccccccChhhhhccccccCCCC
Q 006763 480 DRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRT 551 (632)
Q Consensus 480 dRA~~y~~LL~~~~~~~~~ivl~~~p~~~~~~~~~~~~~l~~l~~~~~tls~vy~kp~~~~~~~~~~~~~~~ 551 (632)
||+++|||+|+.++..|++|+++++|.++..++..+|.++|+|+.+|||+|+|||||++.|+++.+...+..
T Consensus 517 Dr~l~Y~RlLs~~~~~a~~v~~~~kP~is~~~~~~~p~~le~l~~~i~tlssVY~Kp~~~f~~~~~~~~~~~ 588 (734)
T KOG1061|consen 517 DRGLIYWRLLSEDPLIAKDVVLAEKPLISEETDSLDPTLLEELLCDIGTLSSVYHKPPSAFVEGQKGGLFKR 588 (734)
T ss_pred hhHHHHHHHhhcCHHHHHHHHhcCCCccccCCCCCCchHHHHHHHhhccccceeecChHHhcCcCcccccCC
Confidence 999999999999999999999999999999998899999999999999999999999999999988877644
No 3
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-81 Score=677.76 Aligned_cols=520 Identities=36% Similarity=0.600 Sum_probs=472.0
Q ss_pred CCCCCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHH
Q 006763 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (632)
Q Consensus 1 mtlG~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~ 80 (632)
|..|+|+|.+|++|+|+++++|.++||++|+|+.+||+++||+++|.||||||+|.|+|+.+||-|||+|++||.+.+++
T Consensus 63 iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaP 142 (968)
T KOG1060|consen 63 IAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIRVPMIAP 142 (968)
T ss_pred HhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccH
Q 006763 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (632)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~ 160 (632)
.++-+|+++..|++|||||+||.|+.|+|.++|+.-. .+.+.++.||.|++|.|+++|+.++.++|+ +.++++|
T Consensus 143 I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~--qL~e~I~~LLaD~splVvgsAv~AF~evCP----erldLIH 216 (968)
T KOG1060|consen 143 IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD--QLEEVIKKLLADRSPLVVGSAVMAFEEVCP----ERLDLIH 216 (968)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH--HHHHHHHHHhcCCCCcchhHHHHHHHHhch----hHHHHhh
Confidence 9999999999999999999999999999999999876 589999999999999999999999999975 4589999
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhccccC---------------------------------CHHHHHHHHHHHHHhh
Q 006763 161 HTLSKLLTALNECTEWGQVFILDALSRYKAA---------------------------------DAREAENIVERVTPRL 207 (632)
Q Consensus 161 ~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~---------------------------------~~~~~~~il~~v~~~L 207 (632)
+++++||+.+.+.++|+|+.++.+|.+|+.. ...+...+++...++|
T Consensus 217 knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl 296 (968)
T KOG1060|consen 217 KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL 296 (968)
T ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHH
Confidence 9999999999999999999999999999731 0234456788888999
Q ss_pred cCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccCchhHHHHHHHHHHHHHhhCccchhcccceeEeccC
Q 006763 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYN 287 (632)
Q Consensus 208 ~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~ 287 (632)
++.|++|+++++++++++.+ +.-. .+++.+|++||.+++++||++|++|..|+.+.|.+|.+|++.||+..+
T Consensus 297 ~S~n~sVVmA~aql~y~lAP----~~~~----~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ss 368 (968)
T KOG1060|consen 297 QSRNPSVVMAVAQLFYHLAP----KNQV----TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSS 368 (968)
T ss_pred hcCCcHHHHHHHhHHHhhCC----HHHH----HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecC
Confidence 99999999999999998754 2112 246888999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHH
Q 006763 288 DPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQE 367 (632)
Q Consensus 288 dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e 367 (632)
||..+|..||++|..|+|+.|+..|++||..|+.+.|.+|+..+|++||+||.+.....+.|++.|+.+++.....|+.|
T Consensus 369 Dp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~e 448 (968)
T KOG1060|consen 369 DPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAE 448 (968)
T ss_pred CHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCcccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCccCC-HHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 006763 368 AIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTAT 446 (632)
Q Consensus 368 ~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~-~~~~l~~l~~~f~~e~~~vq~~iLta~ 446 (632)
++.+|+.++++.|-....++.+|.+.++.+.-|.|+++++|++|||+..++. +++++|.++++|.+|.++||+|+|...
T Consensus 449 aV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~~evKlQILnL~ 528 (968)
T KOG1060|consen 449 AVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLS 528 (968)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccccchhhHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999865 899999999999999999999999999
Q ss_pred HHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcCCH---HHHHhhhccCCCCCCCCCCc----CCHHHH
Q 006763 447 VKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDP---EAAKDVVLAEKPVISDDSNQ----LDPSLL 519 (632)
Q Consensus 447 ~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~~~---~~~~~ivl~~~p~~~~~~~~----~~~~~l 519 (632)
+||+...+++ .+.+++++++.+.+ +.++|+||||+|+..|+.... +-+++++++.||........ .-.+.+
T Consensus 529 aKLyl~~~~~-~kll~~Yv~~L~~y-D~sYDiRDRaRF~r~l~~~~~~Ls~h~~ei~l~~Kpa~~~es~f~~~~~~~gsl 606 (968)
T KOG1060|consen 529 AKLYLTNIDQ-TKLLVQYVFELARY-DLSYDIRDRARFLRQLISPLEALSKHAREIFLASKPAPVLESSFKDRHYQLGSL 606 (968)
T ss_pred hhheEechhh-HHHHHHHHHHHhcc-CCCcchhHHHHHHHHHhccHHHHHHHHHHHhhccCCCccCcccccCCCcccchH
Confidence 9999998875 99999999999875 589999999999999988643 45789999988644322211 222333
Q ss_pred HHHHHhcCccccccccChhh
Q 006763 520 DELLANIATLSSVYHKPPEA 539 (632)
Q Consensus 520 ~~l~~~~~tls~vy~kp~~~ 539 (632)
..+ ++.-+..|..-|.+
T Consensus 607 S~l---Ln~~a~GY~~lp~~ 623 (968)
T KOG1060|consen 607 SLL---LNAPAPGYEPLPNW 623 (968)
T ss_pred HHH---hcCcCcCCccCCCc
Confidence 333 45567777776655
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=7.6e-77 Score=668.54 Aligned_cols=482 Identities=37% Similarity=0.646 Sum_probs=435.0
Q ss_pred CCCCCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHH
Q 006763 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (632)
Q Consensus 1 mtlG~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~ 80 (632)
|++|+|++++|++++++++++|++.||+||+|++.+++.+||+++|++|+++||++|+||++||+|||+||+++++++++
T Consensus 34 ~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~ 113 (526)
T PF01602_consen 34 MMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAE 113 (526)
T ss_dssp HHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHH
T ss_pred HHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccH
Q 006763 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (632)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~ 160 (632)
.+.+.|.+++.|++|||||+|++|++|+|+.+|+.+++. |++.+.++|.|+|++|+.+|+.++.++ ..++.....+.+
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~ 191 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIP 191 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHH
Confidence 999999999999999999999999999999999999865 899999999999999999999999999 322222236677
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHH
Q 006763 161 HTLSKLLTALNECTEWGQVFILDALSRYKAADAREA--ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNL 238 (632)
Q Consensus 161 ~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~--~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~ 238 (632)
..+++|.+.+..++||.|+.++++|..|.+.++... ..+++.+.+.+++++++|+++|++++.++.+ ++...
T Consensus 192 ~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~---~~~~~--- 265 (526)
T PF01602_consen 192 KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP---SPELL--- 265 (526)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SHHHH---
T ss_pred HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc---chHHH---
Confidence 778888888899999999999999999999988888 7899999999999999999999999998743 34333
Q ss_pred HHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCc-cchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHH
Q 006763 239 CKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP-TILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEF 316 (632)
Q Consensus 239 ~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p-~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL 316 (632)
..++++|++++ ++++|+||++|++|..|++.+| .++..+...|++++++|.+||++||++|+.++|++|+..|++||
T Consensus 266 -~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL 344 (526)
T PF01602_consen 266 -QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDEL 344 (526)
T ss_dssp -HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred -HhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHH
Confidence 35677888888 4789999999999999999994 45545566677787999999999999999999999999999999
Q ss_pred HHhhhhc-CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHHhhc
Q 006763 317 KEYATEV-DVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLD 395 (632)
Q Consensus 317 ~~yl~~~-d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~ 395 (632)
.+|+++. |.+++++++++|+.++.+++++.+||++++++++..+++++..++|..++++++++|+.++.++..|++.++
T Consensus 345 ~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~ 424 (526)
T PF01602_consen 345 LKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLE 424 (526)
T ss_dssp HHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHT
T ss_pred HHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHH
Confidence 9999665 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHhcccCccCC---HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChH-HHHHHHHHhhhc
Q 006763 396 TLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQ-QMIQVVLNNATV 471 (632)
Q Consensus 396 ~i~~p~a~~~~iWiLGEy~~~i~~---~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~-~~v~~ll~~~~~ 471 (632)
++.+++++++++|++|||++.+++ ++++++.+.++|..+++.||.++||+++|++.+.|.++.+ .+++.+.+.+.+
T Consensus 425 ~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~ 504 (526)
T PF01602_consen 425 DISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATE 504 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHH
T ss_pred HhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcc
Confidence 999999999999999999999998 9999999999999999999999999999999999964343 677777777776
Q ss_pred CCCChHHHhhHHHHHHHhcC
Q 006763 472 ETDNPDLRDRAYIYWRLLST 491 (632)
Q Consensus 472 ~s~~~dvrdRA~~y~~LL~~ 491 (632)
+|.|+||||||+|||+||+.
T Consensus 505 ~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 505 DSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp S-SSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcc
Confidence 78999999999999999974
No 5
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-75 Score=632.51 Aligned_cols=495 Identities=22% Similarity=0.333 Sum_probs=426.7
Q ss_pred CCCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHH
Q 006763 3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL 82 (632)
Q Consensus 3 lG~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l 82 (632)
+|||.+|++++++|+++|+++..||+|||+++.++++++|+.+|++|+++|||+|+|.+++|+||.++|+|.++||++++
T Consensus 64 LGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~Emardl 143 (866)
T KOG1062|consen 64 LGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDL 143 (866)
T ss_pred hCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCC--chhccH
Q 006763 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP--IFEITS 160 (632)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~--~~~l~~ 160 (632)
.|.|.+++++++|||||||++|.+|++++.|++++. |+....++|+|+|++|+.+++..+.++|+.++.. .|.-..
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~--f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~ 221 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH--FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLV 221 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH--hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999984 9999999999999999999999999999987532 233233
Q ss_pred HHHHHHHHHhh------------ccChhhHHHHHHHHhccccCCHHH---HHHHHHHHHHhh---cCCCHHHHHHHHHHH
Q 006763 161 HTLSKLLTALN------------ECTEWGQVFILDALSRYKAADARE---AENIVERVTPRL---QHANCAVVLSAVKMI 222 (632)
Q Consensus 161 ~~~~~Ll~~l~------------~~~ew~qi~lL~lL~~y~~~~~~~---~~~il~~v~~~L---~~~n~aVv~eaik~i 222 (632)
+.+.++|+.+. -++||+|+.||++|+.++..+.+. +.+++..+.+.- ++.+.||+||||++|
T Consensus 222 ~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI 301 (866)
T KOG1062|consen 222 PSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTI 301 (866)
T ss_pred HHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 44455555553 169999999999999998765433 334455444433 345679999999999
Q ss_pred HHhhhccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhcccc-eeEeccCCchhHHHHHHHHH
Q 006763 223 LQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIM 300 (632)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~~-~f~~l~~dd~~Ik~~kL~lL 300 (632)
+.+. +...++.+ .++.|.++| +++.|+||++|..|.+.++..|+.+++|.. ++.|+.+.|.+||++|||++
T Consensus 302 ~~I~----~~~~Lrvl---ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs 374 (866)
T KOG1062|consen 302 MDIR----SNSGLRVL---AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELS 374 (866)
T ss_pred Hhcc----CCchHHHH---HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 9753 33445555 345555555 789999999999999999999999999976 88999999999999999999
Q ss_pred HHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhC-
Q 006763 301 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY- 379 (632)
Q Consensus 301 ~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~- 379 (632)
|.|+|++|+..+++||++|+...|.+|+.+.+..|..+|++|+++..|++|++++.++.+|++|..++|..+..++.+-
T Consensus 375 ~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~ 454 (866)
T KOG1062|consen 375 YALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAF 454 (866)
T ss_pred HHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988888876
Q ss_pred cccHHHHHHHHHHhhc-----cCChhhHHHHHHHHHhcccCccCC-----------HH---HHHHHHhhhCCCCCHHHHH
Q 006763 380 PNTYESIIATLCESLD-----TLDEPEAKASMIWIIGEYAERIDN-----------AD---ELLESFLESFPEEPAQVQL 440 (632)
Q Consensus 380 p~~~~~ii~~L~~~l~-----~i~~p~a~~~~iWiLGEy~~~i~~-----------~~---~~l~~l~~~f~~e~~~vq~ 440 (632)
++..++.+.+|...+. ++.++...++++|+|||||++.-+ .. ++++.++.+.. .++.+|.
T Consensus 455 ~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~-s~~~tk~ 533 (866)
T KOG1062|consen 455 QELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHS-SDSTTKG 533 (866)
T ss_pred cchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhcc-chHHHHH
Confidence 8888888888877553 255556689999999999976533 23 45555555544 3489999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcCCHHHHHhhhccCCCCCCCCC
Q 006763 441 QLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDS 511 (632)
Q Consensus 441 ~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~~~~~~~~ivl~~~p~~~~~~ 511 (632)
++|+|++||..+.++ ..+.+++++... ..|.|.|+||||+||..++..+ ..++..++..||.++.-+
T Consensus 534 yal~Al~KLSsr~~s--~~~ri~~lI~~~-~~s~~~elQQRa~E~~~l~~~~-~~lr~siLe~mp~~e~~~ 600 (866)
T KOG1062|consen 534 YALTALLKLSSRFHS--SSERIKQLISSY-KSSLDTELQQRAVEYNALFAKD-KHLRKSILERMPSCEDIT 600 (866)
T ss_pred HHHHHHHHHHhhccc--cHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHH-HHHHHHhcccCccccccc
Confidence 999999999999997 567788888864 4789999999999999999754 467778999999887643
No 6
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-71 Score=587.53 Aligned_cols=499 Identities=20% Similarity=0.299 Sum_probs=435.0
Q ss_pred CCCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHH
Q 006763 3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL 82 (632)
Q Consensus 3 lG~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l 82 (632)
+|+|+.|++++.+++++++.+..|.+||++++.+.++|+|+.-|++|+++|||.+.||...+|||.++++|+..+|.+.+
T Consensus 68 lg~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~ 147 (938)
T KOG1077|consen 68 LGYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAF 147 (938)
T ss_pred hcCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCC--CChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccH
Q 006763 83 CDPLQRCLKD--DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (632)
Q Consensus 83 ~~~v~~~L~d--~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~ 160 (632)
.++|.|+|.+ +.+||||+||+|++++|+..||++...+|.+.+..+|+|++-+|+.++..++.-|++++++.+..-..
T Consensus 148 ~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~ 227 (938)
T KOG1077|consen 148 ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP 227 (938)
T ss_pred hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH
Confidence 9999999986 78999999999999999999999998899999999999999999999999999999888765433333
Q ss_pred HHHHHHHHHhh-------------ccChhhHHHHHHHHhccccC-CHHHH---HHHHHHHHHhh---------cCCC--H
Q 006763 161 HTLSKLLTALN-------------ECTEWGQVFILDALSRYKAA-DAREA---ENIVERVTPRL---------QHAN--C 212 (632)
Q Consensus 161 ~~~~~Ll~~l~-------------~~~ew~qi~lL~lL~~y~~~-~~~~~---~~il~~v~~~L---------~~~n--~ 212 (632)
..+.+|.+... -++||+|++++++|+.|.+. |+... .++++.+.... +|+| .
T Consensus 228 ~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~n 307 (938)
T KOG1077|consen 228 LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKN 307 (938)
T ss_pred HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHH
Confidence 34444443321 26999999999999999543 33322 34444444333 2444 4
Q ss_pred HHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCc--cchhcccc-eeEecc-C
Q 006763 213 AVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP--TILAHEIK-VFFCKY-N 287 (632)
Q Consensus 213 aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p--~~~~~~~~-~f~~l~-~ 287 (632)
||+|||+++++++- ++++++. ++...|+.+++ +++|+||++|+++..++...+ +.++.|.. +|..+. +
T Consensus 308 aVLFeaI~l~~h~D---~e~~ll~----~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkte 380 (938)
T KOG1077|consen 308 AVLFEAISLAIHLD---SEPELLS----RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTE 380 (938)
T ss_pred HHHHHHHHHHHHcC---CcHHHHH----HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccc
Confidence 99999999999852 3565554 45666777874 899999999999999998765 35777876 555555 7
Q ss_pred CchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHH
Q 006763 288 DPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQE 367 (632)
Q Consensus 288 dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e 367 (632)
.|.+||++++|+||.||+.+|+++||.||+.|+...|..++.+++-+++.+|+||+++..||||+.++|++..|+|+.+|
T Consensus 381 rDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsde 460 (938)
T KOG1077|consen 381 RDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDE 460 (938)
T ss_pred cchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCcccHHHHHHHHHHhhccCChhhH-HHHHHHHHhcccCccCC-----HHHHHHHHhhhCCCCCHHHHHH
Q 006763 368 AIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEA-KASMIWIIGEYAERIDN-----ADELLESFLESFPEEPAQVQLQ 441 (632)
Q Consensus 368 ~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a-~~~~iWiLGEy~~~i~~-----~~~~l~~l~~~f~~e~~~vq~~ 441 (632)
+|..+.+|+.++++.+.++.+++++++....-.|. ..+-.+|+||||+++.+ +...+..+.++|..+++.+|..
T Consensus 461 VW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~l 540 (938)
T KOG1077|consen 461 VWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRAL 540 (938)
T ss_pred HHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHH
Confidence 99999999999999999999999999975444443 35667999999999865 6789999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcCCHHHHHhhhccCCCCCCCCC
Q 006763 442 LLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDS 511 (632)
Q Consensus 442 iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~~~~~~~~ivl~~~p~~~~~~ 511 (632)
+||+..|++...|+ +++.++++|+.- .+..|+|+||||+||..|.....-.+..+|+.+||+|.+..
T Consensus 541 LLtTyiKl~nl~PE--i~~~v~~vFq~~-~n~~D~ElQqRa~EYLql~k~as~dvL~~vleeMPpF~er~ 607 (938)
T KOG1077|consen 541 LLTTYIKLINLFPE--IKSNVQKVFQLY-SNLIDVELQQRAVEYLQLSKLASTDVLQTVLEEMPPFPERE 607 (938)
T ss_pred HHHHHHHHHhhChh--hhHHHHHHHHhh-cccCCHHHHHHHHHHHHHHHhccchHHHHHHhhCCCCcccc
Confidence 99999999999996 999999999974 46799999999999999998765567788999999998654
No 7
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=3e-68 Score=591.28 Aligned_cols=545 Identities=39% Similarity=0.598 Sum_probs=466.6
Q ss_pred CCCCCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHH
Q 006763 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (632)
Q Consensus 1 mtlG~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~ 80 (632)
|+.|+|||.+|++|+|.++|.|.++|||+|+|+.+|++.+|++++|++|+++||++|+||++||+|||+||.++.+++++
T Consensus 47 M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~ 126 (757)
T COG5096 47 MSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLG 126 (757)
T ss_pred HhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccH
Q 006763 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (632)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~ 160 (632)
+++++|+++++|+++||||+|++|+.|+|+.+++.+++.|..+.+..++.|.||.|++||+.+|.+|.......++.-..
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~ 206 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVI 206 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999998763221111111
Q ss_pred HHHHHHHHHhhc-cChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHH
Q 006763 161 HTLSKLLTALNE-CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC 239 (632)
Q Consensus 161 ~~~~~Ll~~l~~-~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~ 239 (632)
..+.++.-.... +.+|.+..+++.|..+.+.++.++..+.+++.+.++|.|++|+..+++.++.+++++++.. +.
T Consensus 207 ~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~----~~ 282 (757)
T COG5096 207 LRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNN----LF 282 (757)
T ss_pred HHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhcccc----HH
Confidence 111111101112 3599999999999999998888889999999999999999999999999999887665443 44
Q ss_pred HhcccchhhhccCc-hhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 006763 240 KKMAPPLVTLLSAE-PEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE 318 (632)
Q Consensus 240 ~~~~~~L~~Lls~~-~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~ 318 (632)
....+++.+|+.++ +.++|+...++..+....|..+....+.|+|.+++|.|++.+|+++++.+++.+|..+++.|+.+
T Consensus 283 ~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~ 362 (757)
T COG5096 283 LISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIY 362 (757)
T ss_pred HhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Confidence 46778888988765 89999999999999999999999888999999999999999999999999999999999999999
Q ss_pred hhhh--cCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hhchhhHHHH-----HHHHH---HHHhhCccc-HH
Q 006763 319 YATE--VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK---IKVNYVVQEA-----IIVIK---DIFRRYPNT-YE 384 (632)
Q Consensus 319 yl~~--~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~---~~~~~v~~e~-----i~~l~---~ilr~~p~~-~~ 384 (632)
|+.+ .|.+++++++++||.++.+.+.....|++.+++++. ..++|+.+|+ |.+++ +++|.+|+- .+
T Consensus 363 y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~ 442 (757)
T COG5096 363 YIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRILPNEYPK 442 (757)
T ss_pred HHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccchhhccchhhhhhcccceeeeeehhcchhhhcCCcchh
Confidence 9998 999999999999999999998888999999999999 8999999998 66665 778887766 44
Q ss_pred HHHHHHHHhhccCC----hhhHHHHH-----HHHHhcccCccCCH-HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCC
Q 006763 385 SIIATLCESLDTLD----EPEAKASM-----IWIIGEYAERIDNA-DELLESFLESFPEEPAQVQLQLLTATVKLFLKKP 454 (632)
Q Consensus 385 ~ii~~L~~~l~~i~----~p~a~~~~-----iWiLGEy~~~i~~~-~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p 454 (632)
..+..++...+.++ .|.++.++ +|++|||++.+..- ++.++.++.+|..|+.+||.+|+++.+|++...+
T Consensus 443 ~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~i~r~~~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~~ 522 (757)
T COG5096 443 ILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDIIPRLEPELLRIAISNFVDETLEVQYTILMSSVKLIANSI 522 (757)
T ss_pred hhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhCc
Confidence 44444444444444 79999888 99999999998774 5899999999999999999999999999999987
Q ss_pred CCChH---HHHHHHHHhhhcCCCChHHHhhHHHHHHHhcC-CHHHHHhhhccCCCCCCCCC-------CcCCHHHHHHHH
Q 006763 455 TEGPQ---QMIQVVLNNATVETDNPDLRDRAYIYWRLLST-DPEAAKDVVLAEKPVISDDS-------NQLDPSLLDELL 523 (632)
Q Consensus 455 ~e~~~---~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~-~~~~~~~ivl~~~p~~~~~~-------~~~~~~~l~~l~ 523 (632)
....+ ++.+.++++|+....++|+||||.+||++++. .++.+..+++.++|...... ....+++++.+.
T Consensus 523 ~~~~~~~~~~d~~v~~~~~~~v~~~DlRDra~my~~~lst~~~~~s~~i~~e~~~s~~~~~~i~~~~~~~~t~~~l~nl~ 602 (757)
T COG5096 523 RKAKQCNSELDQDVLRRCFDYVLVPDLRDRARMYSRLLSTPLPEFSDPILCEAKKSNSQFEIILSALLTNQTPELLENLR 602 (757)
T ss_pred HhhhhccchhccHHHHHHHhccCChhHHHHHHHHHHHhcCCCccccchhhhcccccccchhhhhhhhccccCHHHHHhhh
Confidence 64222 46778999999999999999999999999994 56778888888866554321 223355555544
Q ss_pred Hhc--CccccccccChhhhhccccccCC
Q 006763 524 ANI--ATLSSVYHKPPEAFVTRVKTTAS 549 (632)
Q Consensus 524 ~~~--~tls~vy~kp~~~~~~~~~~~~~ 549 (632)
..| |++.++|++|+..+..+.+...+
T Consensus 603 ~~~t~~~l~~~~~~~~~~l~~~~~~~~~ 630 (757)
T COG5096 603 LDFTLGTLSTIPLKPIFNLRKGAVVLQQ 630 (757)
T ss_pred ccccccceeccCCCCcccCCCCceeeee
Confidence 445 99999999999998777444333
No 8
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-55 Score=468.95 Aligned_cols=478 Identities=19% Similarity=0.324 Sum_probs=409.2
Q ss_pred CCCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHH
Q 006763 3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL 82 (632)
Q Consensus 3 lG~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l 82 (632)
+|+|++|.-++++..|++..+..||+||++...-++...|..+|++|+++||++|+|.+-.|+||..|+++.+|++++++
T Consensus 66 lg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDL 145 (877)
T KOG1059|consen 66 LGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDL 145 (877)
T ss_pred HcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHH
Q 006763 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (632)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~ 162 (632)
.+.|..+|+++.|||||+|+..++|+|.++|+.+.. -+++|..-|.|.||+|+++|+.++||++.++|++++.+.+ .
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~--~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP-~ 222 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP--CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAP-L 222 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh--hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccH-H
Confidence 999999999999999999999999999999999985 6799999999999999999999999999999999888865 5
Q ss_pred HHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHh--hhcc-CChHHHHHH
Q 006763 163 LSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANC-AVVLSAVKMILQQ--MELI-TSTDVVRNL 238 (632)
Q Consensus 163 ~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~-aVv~eaik~i~~~--~~~i-~~~~~~~~~ 238 (632)
+.+|+.. ..+.|.-++|+++++.+.|-+++...++++.+..++.+..+ +++||||++++.. .... .+...++-
T Consensus 223 ffklltt--SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL- 299 (877)
T KOG1059|consen 223 FYKLLVT--SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQL- 299 (877)
T ss_pred HHHHHhc--cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHH-
Confidence 5566543 57899999999999999999999999999999988877554 9999999999864 1111 12333433
Q ss_pred HHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhcccc-eeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHH
Q 006763 239 CKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEF 316 (632)
Q Consensus 239 ~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~~-~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL 316 (632)
++..|..|+ .+|+|+||++|-.+.+|+..+|..++.|.. ++.|+.+.|.+||.+||++|+.|++++|+.+|++.|
T Consensus 300 ---CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~L 376 (877)
T KOG1059|consen 300 ---CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTL 376 (877)
T ss_pred ---HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 355566666 689999999999999999999999999988 678999999999999999999999999999999999
Q ss_pred HHhhhhcCH-HHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHH
Q 006763 317 KEYATEVDV-DFVRKAVRAIGRCAIK----LERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLC 391 (632)
Q Consensus 317 ~~yl~~~d~-~~~~~~i~aIg~la~k----~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~ 391 (632)
+.|+...+. .|+.+++..|-.++.+ |-.+++||+.++++|....+..-...+...+.++.-+.|..+...+....
T Consensus 377 M~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~ 456 (877)
T KOG1059|consen 377 MKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMS 456 (877)
T ss_pred HHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHH
Confidence 999987665 8999998665544443 45789999999999999988666667778899998899999988888877
Q ss_pred HhhccC----------ChhhHHHHHHHHHhcccCccCCHHHHHHHHhhh-CCCCCHHHHHHHHHHHHHHhhcCCCC----
Q 006763 392 ESLDTL----------DEPEAKASMIWIIGEYAERIDNADELLESFLES-FPEEPAQVQLQLLTATVKLFLKKPTE---- 456 (632)
Q Consensus 392 ~~l~~i----------~~p~a~~~~iWiLGEy~~~i~~~~~~l~~l~~~-f~~e~~~vq~~iLta~~Kl~~~~p~e---- 456 (632)
..+++. +-+++..+++||+|||+++++|+.++++.++.. +...+..+|...+.+++|+|+..-.+
T Consensus 457 ~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~ 536 (877)
T KOG1059|consen 457 ALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPNDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEET 536 (877)
T ss_pred HHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 776621 246778999999999999999999999999975 55789999999999999999864221
Q ss_pred ----ChHHHHH---HHHHhhhcCCCChHHHhhHHHHHHHhc
Q 006763 457 ----GPQQMIQ---VVLNNATVETDNPDLRDRAYIYWRLLS 490 (632)
Q Consensus 457 ----~~~~~v~---~ll~~~~~~s~~~dvrdRA~~y~~LL~ 490 (632)
+...++. ..|.. +..+.|.|||.||.+...+++
T Consensus 537 ~~~e~~~sL~~~i~~~l~q-f~~s~d~EvQERA~~~~~li~ 576 (877)
T KOG1059|consen 537 KDFEGIVSLVNLILSFLEQ-FSGSSDLEVQERASEVLELIR 576 (877)
T ss_pred cchhHHHHHHHHHHHHhhc-ccCccchhHHHHHHHHHHHHH
Confidence 1222222 22332 346789999999665555544
No 9
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-46 Score=399.93 Aligned_cols=402 Identities=23% Similarity=0.414 Sum_probs=356.4
Q ss_pred CCCCCCCcchhHHHHH-hhcCCCcchHHHHHHHHHHhcCCCCc-----HHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC
Q 006763 1 MTVGKDVSSLFTDVVN-CMQTENLELKKLVYLYLINYAKSQPD-----LAILAVNTFVKDSQDPNPLIRALAVRTMGCIR 74 (632)
Q Consensus 1 mtlG~Dvs~lf~~vi~-l~~s~d~~~Krl~YLyl~~~~~~~~e-----l~lL~iNtl~kDl~~~np~ir~lALr~L~~I~ 74 (632)
|.-|++++.++++||+ ++.++|.++||+.|+||...-+.++| .++|++|.++|||+|||++|||..||++|.++
T Consensus 48 mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLk 127 (948)
T KOG1058|consen 48 MLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLK 127 (948)
T ss_pred HHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcC
Confidence 4569999999999999 68999999999999999999998874 69999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHH-hcCCChhHHHHHHHHHHHHHhcCCC
Q 006763 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDL-ISDNNPMVVANAVAALAEIEENSSR 153 (632)
Q Consensus 75 ~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~l-L~D~d~~Vv~~Al~aL~eI~~~~~~ 153 (632)
.+|+++.++|.|+.||.|+++||||.|++|+..+|+..-.++++ --+.+... +.+.||++..||+..|..+.+..
T Consensus 128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pD--apeLi~~fL~~e~DpsCkRNAFi~L~~~D~Er-- 203 (948)
T KOG1058|consen 128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPD--APELIESFLLTEQDPSCKRNAFLMLFTTDPER-- 203 (948)
T ss_pred cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCC--hHHHHHHHHHhccCchhHHHHHHHHHhcCHHH--
Confidence 99999999999999999999999999999999999997777775 44666664 46999999999999998875443
Q ss_pred CchhccHHHHHHHHHHhhc---cChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccC
Q 006763 154 PIFEITSHTLSKLLTALNE---CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (632)
Q Consensus 154 ~~~~l~~~~~~~Ll~~l~~---~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~ 230 (632)
.+.+|.+.+.+ .++-+|..|++++.+-+..++.+....++.+..+|++.+++|+|||+-++..+. +
T Consensus 204 --------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS---~ 272 (948)
T KOG1058|consen 204 --------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS---N 272 (948)
T ss_pred --------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEcc---C
Confidence 46677776544 567789999999999988889898899999999999999999999999888764 3
Q ss_pred ChHHHHHHHHhcccchhhhcc--CchhHHHHHHHHHHHHHhhCccchhcccc-eeEeccCCchhHHHHHHHHHHHhcCcc
Q 006763 231 STDVVRNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDR 307 (632)
Q Consensus 231 ~~~~~~~~~~~~~~~L~~Lls--~~~niryvaL~~l~~i~~~~p~~~~~~~~-~f~~l~~dd~~Ik~~kL~lL~~L~n~~ 307 (632)
+|..++ .+.+.++.|+- +++|++.+.|..|..+...+..+++..+. ++..+...|..+|+++|++.+.|++..
T Consensus 273 ~p~alk----~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 273 DPTALK----AAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred CHHHHH----HHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence 676665 45677777773 68999999999999999888888988765 567788899999999999999999999
Q ss_pred cHHHHHHHHHH-hhhhc------CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCc
Q 006763 308 NIDQVLLEFKE-YATEV------DVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP 380 (632)
Q Consensus 308 Ni~~Iv~EL~~-yl~~~------d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p 380 (632)
|+++|+.-|.. +.... +..||+.++++|..||.+||..+...|..+++++...++.....++..++..+.++|
T Consensus 349 Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 349 NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 99999999984 44332 356899999999999999999999999999999999999888999999999999999
Q ss_pred ccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCccCCHH
Q 006763 381 NTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNAD 421 (632)
Q Consensus 381 ~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~~~ 421 (632)
+++..++.+|.+.+..+..+++....+||+|||++-..+..
T Consensus 429 ~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i~ 469 (948)
T KOG1058|consen 429 NLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLSEIQ 469 (948)
T ss_pred hHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999998765433
No 10
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-38 Score=343.34 Aligned_cols=465 Identities=18% Similarity=0.307 Sum_probs=400.6
Q ss_pred CCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHH
Q 006763 6 DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDP 85 (632)
Q Consensus 6 Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~ 85 (632)
+...+|+.+.|++|++|..+||++|+++..+.....| .+++++++.||.+..++.+|+.|||+||+|....|...+...
T Consensus 61 eate~ff~~tKlfQskd~~LRr~vYl~Ikels~ised-viivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery 139 (865)
T KOG1078|consen 61 EATELFFAITKLFQSKDVSLRRMVYLAIKELSKISED-VIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERY 139 (865)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchh-hhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHH
Confidence 4567899999999999999999999999999988777 678999999999999999999999999999999999999999
Q ss_pred HHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHH
Q 006763 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSK 165 (632)
Q Consensus 86 v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~ 165 (632)
+++++.|+++.|+-.|...-++++..+++.+.. |.+.++....+.|.+|.++|+.+|+.|.+++.. .+.+
T Consensus 140 ~kqaivd~~~avSsaalvss~hll~~~~~~vkr--w~neiqea~~s~~~m~QyHalglLyqirk~drl--------a~sk 209 (865)
T KOG1078|consen 140 MKQAIVDKNPAVSSAALVSSYHLLPISFDVVKR--WANEVQEAVNSDNIMVQYHALGLLYQIRKNDRL--------AVSK 209 (865)
T ss_pred HHhHeeccccccchHHHHHHhhhhcccHHHHHH--HHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHH--------HHHH
Confidence 999999999999999999999999999999984 999999999999999999999999999876531 3555
Q ss_pred HHHHhh---ccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhc
Q 006763 166 LLTALN---ECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKM 242 (632)
Q Consensus 166 Ll~~l~---~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~ 242 (632)
++..+. -.+++.++.+++.......++......+...+..+++|...+|.+||++.+..+.+ . +.. .+ ...
T Consensus 210 lv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~-~-~~r---~l-~pa 283 (865)
T KOG1078|consen 210 LVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPN-T-NSR---EL-APA 283 (865)
T ss_pred HHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccc-c-CHh---hc-chH
Confidence 555543 35788888888888776555433333455666789999999999999999997643 2 221 11 123
Q ss_pred ccchhhhcc-CchhHHHHHHHHHHHHHhhCccchhcccceeEeccCC-chhHHHHHHHHHHHhcCcccHHHHHHHHHHhh
Q 006763 243 APPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYND-PIYVKMEKLEIMIKLASDRNIDQVLLEFKEYA 320 (632)
Q Consensus 243 ~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~d-d~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl 320 (632)
.+.|..+++ ..+-+||.|++.|++++..+|..+.-.-..+.-+-+| ..+|...|+..|++.++++|++.+++.+..|+
T Consensus 284 vs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv 363 (865)
T KOG1078|consen 284 VSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFV 363 (865)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 445555664 5789999999999999999998875433333222233 47899999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchh-hHHHHHHHHHHHHhhCcccHHHHHHHHHHhhccCCh
Q 006763 321 TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNY-VVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDE 399 (632)
Q Consensus 321 ~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~-v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~ 399 (632)
.+.+++|+.-.+.+|..++.+||.....++++|-++|..+|.+ ....++.++.+++..+|+.++..+..||++++++..
T Consensus 364 ~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~ 443 (865)
T KOG1078|consen 364 SDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEF 443 (865)
T ss_pred HhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999998764 334567799999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcccCccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHH
Q 006763 400 PEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLR 479 (632)
Q Consensus 400 p~a~~~~iWiLGEy~~~i~~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dvr 479 (632)
++.---+..++|+-|....+|..+++.++++...|+..||+..++|++|+....+. .++-+..++++|..| .|.+||
T Consensus 444 ~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~--l~~sI~vllkRc~~D-~DdevR 520 (865)
T KOG1078|consen 444 TQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV--LLPSILVLLKRCLND-SDDEVR 520 (865)
T ss_pred hHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC--ccccHHHHHHHHhcC-chHHHH
Confidence 98888999999999999999999999999999999999999999999999966664 788899999999865 688999
Q ss_pred hhHHHHHHHhc
Q 006763 480 DRAYIYWRLLS 490 (632)
Q Consensus 480 dRA~~y~~LL~ 490 (632)
|||.+|.+.+.
T Consensus 521 drAtf~l~~l~ 531 (865)
T KOG1078|consen 521 DRATFYLKNLE 531 (865)
T ss_pred HHHHHHHHHhh
Confidence 99999999887
No 11
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.5e-35 Score=308.47 Aligned_cols=467 Identities=15% Similarity=0.213 Sum_probs=389.6
Q ss_pred CcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCh-HHHhHHHHHhcCCCchhhHHHHHHH
Q 006763 7 VSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP-LIRALAVRTMGCIRVDKITEYLCDP 85 (632)
Q Consensus 7 vs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np-~ir~lALr~L~~I~~~ei~~~l~~~ 85 (632)
+..+|+.+.|+++++|..+|..+|+++..+..-..| .+|.+|++.||++...| .+|..|+|+|-++...+++......
T Consensus 63 at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~ted-vlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~ 141 (898)
T COG5240 63 ATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTED-VLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERY 141 (898)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchh-hhHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHH
Confidence 456899999999999999999999999999988877 78999999999999887 8999999999999999999999999
Q ss_pred HHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcC----------------CChhHHHHHHHHHHHHHh
Q 006763 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD----------------NNPMVVANAVAALAEIEE 149 (632)
Q Consensus 86 v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D----------------~d~~Vv~~Al~aL~eI~~ 149 (632)
+.++..++++.+|..|+...++++-.+-+.+. .|.+..++...| .++.-..+|+.+|+.+..
T Consensus 142 l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~--rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr 219 (898)
T COG5240 142 LNQAFVSTSMARRSAALVVAYHLLPNNFNQTK--RWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKR 219 (898)
T ss_pred hhhhccccchhhhhhHHHHhhhhccccHHHHH--HHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhc
Confidence 99999999999999999999999887777776 487666654332 346678899999998876
Q ss_pred cCCCCchhccHHHHHHHHHHhh----ccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006763 150 NSSRPIFEITSHTLSKLLTALN----ECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (632)
Q Consensus 150 ~~~~~~~~l~~~~~~~Ll~~l~----~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~ 225 (632)
++.. ...++++.+. -.+...-+.+++.....-.++++....+-..+..+|++...+|.+|++|.++.+
T Consensus 220 ~dkm--------a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~ 291 (898)
T COG5240 220 TDKM--------AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCAL 291 (898)
T ss_pred ccHH--------HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 5532 2234444433 234555666677776655556554444444555677777899999999999986
Q ss_pred h-hccCChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCccchhcccceeEec-cCCchhHHHHHHHHHHH
Q 006763 226 M-ELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCK-YNDPIYVKMEKLEIMIK 302 (632)
Q Consensus 226 ~-~~i~~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l-~~dd~~Ik~~kL~lL~~ 302 (632)
. .++ .++.+. ..++.|.++|+ ...-.||.|+|.|++|++.+|+.+.-.-..+..+ .+...+|..-|+..|++
T Consensus 292 ~~~nv-~~~~~~----~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLK 366 (898)
T COG5240 292 SEENV-GSQFVD----QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLK 366 (898)
T ss_pred HHhcc-CHHHHH----HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHH
Confidence 3 222 233343 35667778885 5678999999999999999998764333323322 34457899999999999
Q ss_pred hcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhH-HHHHHHHHHHHhhCcc
Q 006763 303 LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVV-QEAIIVIKDIFRRYPN 381 (632)
Q Consensus 303 L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~-~e~i~~l~~ilr~~p~ 381 (632)
.++++|+..+++.+..|+++..+.|+.-+|.++..++.+||.....++++|.+.|..+|.+-. ..++.++.+++...|+
T Consensus 367 TGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~ 446 (898)
T COG5240 367 TGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPD 446 (898)
T ss_pred cCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCch
Confidence 999999999999999999999999999999999999999999999999999999998887644 4567899999999999
Q ss_pred cHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 006763 382 TYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQM 461 (632)
Q Consensus 382 ~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~ 461 (632)
.++.+++.||+++++++.++....++.|+|+-|....+|..++++++++...|+..||.+.+.|+.|+.....+.-.++.
T Consensus 447 skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~s 526 (898)
T COG5240 447 SKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQS 526 (898)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887655446788
Q ss_pred HHHHHHhhhcCCCChHHHhhHHHHHHHhc
Q 006763 462 IQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (632)
Q Consensus 462 v~~ll~~~~~~s~~~dvrdRA~~y~~LL~ 490 (632)
+..++++|.+ +.|.||||||.+..+.+.
T Consensus 527 v~~~lkRcln-D~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 527 VENALKRCLN-DQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHhh-cccHHHHHHHHHHHHhhh
Confidence 9999999986 578899999999999887
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.51 E-value=2.8e-12 Score=144.63 Aligned_cols=407 Identities=17% Similarity=0.193 Sum_probs=220.2
Q ss_pred hhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC--chhhHHH-HHHHHHhhhCCC
Q 006763 17 CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEY-LCDPLQRCLKDD 93 (632)
Q Consensus 17 l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~--~~ei~~~-l~~~v~~~L~d~ 93 (632)
-+.++|...+-++-=+++.+. .+|++--+.+.+.+=+.|++|+||.-|+-++.++- .|+.++. +.+.+.+++.|+
T Consensus 87 dl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~ 164 (526)
T PF01602_consen 87 DLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDK 164 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHS
T ss_pred hhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCC
Confidence 455666666666666666654 56666666777777777777777777777776663 4666665 577777777777
Q ss_pred ChHHHHHHHHHHHHhhhhccc----cccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHH
Q 006763 94 DPYVRKTAAICVAKLYDINAE----LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTA 169 (632)
Q Consensus 94 ~pyVRK~A~~al~kl~~~~p~----~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~ 169 (632)
++-|+..|+.++..+ +.+|+ .++ .+...|.+++.+.+|-+...++..+..+....+..... ...+..+...
T Consensus 165 ~~~V~~~a~~~l~~i-~~~~~~~~~~~~--~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~ 239 (526)
T PF01602_consen 165 DPSVVSAALSLLSEI-KCNDDSYKSLIP--KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNL 239 (526)
T ss_dssp SHHHHHHHHHHHHHH-HCTHHHHTTHHH--HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH-ccCcchhhhhHH--HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHH
Confidence 777777777766666 32332 233 46677777777777777777777777666655321100 1233444444
Q ss_pred hhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhh
Q 006763 170 LNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTL 249 (632)
Q Consensus 170 l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~L 249 (632)
+...++=......+++..+.+. ......+++.+..++.+.++.+.+-+++.+..+... ++..+.. ....+..+
T Consensus 240 l~s~~~~V~~e~~~~i~~l~~~-~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~--~~~~v~~----~~~~~~~l 312 (526)
T PF01602_consen 240 LQSSSPSVVYEAIRLIIKLSPS-PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS--NPPAVFN----QSLILFFL 312 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH--CHHHHGT----HHHHHHHH
T ss_pred hhccccHHHHHHHHHHHHhhcc-hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc--cchhhhh----hhhhhhee
Confidence 4444444444555555555443 224556666666677766666777776666665321 2221110 01111223
Q ss_pred c-cCchhHHHHHHHHHHHHHhhCc--cchhcccceeEeccCCchhHHHHHHHHHHHhcC--cccHHHHHHHHHHhhhhcC
Q 006763 250 L-SAEPEIQYVALRNINLIVQRRP--TILAHEIKVFFCKYNDPIYVKMEKLEIMIKLAS--DRNIDQVLLEFKEYATEVD 324 (632)
Q Consensus 250 l-s~~~niryvaL~~l~~i~~~~p--~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n--~~Ni~~Iv~EL~~yl~~~d 324 (632)
. +.++.+|..+|+.+..++.... .++..-.+ ++...+|..+|...+..+..++. +.+.+..++-|.+.+...+
T Consensus 313 ~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~--~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~ 390 (526)
T PF01602_consen 313 LYDDDPSIRKKALDLLYKLANESNVKEILDELLK--YLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISG 390 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHH--HHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTG
T ss_pred cCCCChhHHHHHHHHHhhcccccchhhHHHHHHH--HHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhcc
Confidence 3 3456677777777766665321 12211111 11223345566666666666553 3455666666666666555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh-hchhhHHHHHHHHHHHHhhCcc--cHHHHHHHHHHhhccCChhh
Q 006763 325 VDFVRKAVRAIGRCAIKLERAAERCISVLLELIKI-KVNYVVQEAIIVIKDIFRRYPN--TYESIIATLCESLDTLDEPE 401 (632)
Q Consensus 325 ~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~-~~~~v~~e~i~~l~~ilr~~p~--~~~~ii~~L~~~l~~i~~p~ 401 (632)
..+..+++..|..+..+.+...++.+..+.+++.. ..+.+...++..+.+.....++ ....++..+.+.+.. ..++
T Consensus 391 ~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 469 (526)
T PF01602_consen 391 DYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIE-ESPE 469 (526)
T ss_dssp GGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTT-SHHH
T ss_pred ccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhcc-ccHH
Confidence 55666666666666666666666666777666665 2234445555555555544444 334445555554432 2344
Q ss_pred HHHHHHHHHhcccCccC--CH-HHHHHHHhhhCC--CCCHHHHH
Q 006763 402 AKASMIWIIGEYAERID--NA-DELLESFLESFP--EEPAQVQL 440 (632)
Q Consensus 402 a~~~~iWiLGEy~~~i~--~~-~~~l~~l~~~f~--~e~~~vq~ 440 (632)
++..++-.+.+.....+ .. +.++..+..-.. +.+.+||.
T Consensus 470 vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~ 513 (526)
T PF01602_consen 470 VKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRD 513 (526)
T ss_dssp HHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHH
T ss_pred HHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHH
Confidence 55555555554443333 11 234443333222 44566654
No 13
>PTZ00429 beta-adaptin; Provisional
Probab=99.44 E-value=4.1e-09 Score=121.53 Aligned_cols=439 Identities=12% Similarity=0.116 Sum_probs=270.4
Q ss_pred HHHHHhhcCCCcc-----hHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC--chhhHHHHHH
Q 006763 12 TDVVNCMQTENLE-----LKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCD 84 (632)
Q Consensus 12 ~~vi~l~~s~d~~-----~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~--~~ei~~~l~~ 84 (632)
.++-+.+.+++.. +||+.|+.. ..+.-+.+..-++ |-+.++|..+|-+.-=.+.++. .|+.+-..+.
T Consensus 35 ~ELr~~L~s~~~~~kk~alKkvIa~mt--~G~DvS~LF~dVv----k~~~S~d~elKKLvYLYL~~ya~~~pelalLaIN 108 (746)
T PTZ00429 35 AELQNDLNGTDSYRKKAAVKRIIANMT--MGRDVSYLFVDVV----KLAPSTDLELKKLVYLYVLSTARLQPEKALLAVN 108 (746)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH--CCCCchHHHHHHH----HHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHH
Confidence 4566677776655 444444332 2333333333333 3566778888877655554443 4777778899
Q ss_pred HHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHH
Q 006763 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLS 164 (632)
Q Consensus 85 ~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~ 164 (632)
.+++-+.|++|+||--|+-++.++- .|+.++. +...+++++.|++|-|..+|+.++..+...++.... ....+.
T Consensus 109 tl~KDl~d~Np~IRaLALRtLs~Ir--~~~i~e~--l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~--~~~~~~ 182 (746)
T PTZ00429 109 TFLQDTTNSSPVVRALAVRTMMCIR--VSSVLEY--TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY--QQDFKK 182 (746)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCC--cHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc--ccchHH
Confidence 9999999999999999999988763 5677663 678899999999999999999999998876653211 111234
Q ss_pred HHHHHhhccChhhHHHHHHHHhccccCCHH---HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHh
Q 006763 165 KLLTALNECTEWGQVFILDALSRYKAADAR---EAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKK 241 (632)
Q Consensus 165 ~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~---~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~ 241 (632)
+|.+.+.+.++--+...+.+|......++. -....+..+...+...+.=-....++++..+.+. +.+....+
T Consensus 183 ~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~--~~~e~~~i--- 257 (746)
T PTZ00429 183 DLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS--DKESAETL--- 257 (746)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC--CcHHHHHH---
Confidence 555566788888888888877766544322 1233445555556666664445555666654331 22222222
Q ss_pred cccchhhhc-cCchhHHHHHHHHHHHHHhh-Cccchhccc----c-eeEeccCCchhHHHHHHHHHHHhcCcccHHHHHH
Q 006763 242 MAPPLVTLL-SAEPEIQYVALRNINLIVQR-RPTILAHEI----K-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLL 314 (632)
Q Consensus 242 ~~~~L~~Ll-s~~~niryvaL~~l~~i~~~-~p~~~~~~~----~-~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~ 314 (632)
...+...+ ++++-+.+-+.+.+..+... .|+.+..-. . .++.. +.+..+|..+|+-+..++... -..+..
T Consensus 258 -l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~-P~lf~~ 334 (746)
T PTZ00429 258 -LTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS-RRDAETQYIVCKNIHALLVIF-PNLLRT 334 (746)
T ss_pred -HHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC-HHHHHH
Confidence 33333344 46777888888877777643 233332211 1 12333 445567777776665555432 233334
Q ss_pred HHHH-hhhhcCHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 006763 315 EFKE-YATEVDVD-FVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCE 392 (632)
Q Consensus 315 EL~~-yl~~~d~~-~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~ 392 (632)
++.. |....|+. ++...+.-+..++.. ...+.+++-|.+........++.+++..+..+..++|+..+.++..|++
T Consensus 335 ~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane--~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ 412 (746)
T PTZ00429 335 NLDSFYVRYSDPPFVKLEKLRLLLKLVTP--SVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQ 412 (746)
T ss_pred HHHhhhcccCCcHHHHHHHHHHHHHHcCc--ccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 4443 35544544 555666667666643 5566778888888877777888999999999999999999999999998
Q ss_pred hhccCCh--hhHHHHHHHHHhcccCccCCHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 006763 393 SLDTLDE--PEAKASMIWIIGEYAERIDNADELLESFLESF---PEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLN 467 (632)
Q Consensus 393 ~l~~i~~--p~a~~~~iWiLGEy~~~i~~~~~~l~~l~~~f---~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~ 467 (632)
.++.-.+ .++..++--|+-.|.+. .++..++..+ .-..++.|..++=.+.-+.-..+. ..+.+..+++
T Consensus 413 ll~~~~~~v~e~i~vik~IlrkyP~~-----~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~--a~~~L~~~i~ 485 (746)
T PTZ00429 413 IVDRRPELLPQVVTAAKDIVRKYPEL-----LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN--GKDIIQRFID 485 (746)
T ss_pred HhcCCchhHHHHHHHHHHHHHHCccH-----HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh--HHHHHHHHHh
Confidence 8864111 23334444556666542 2455555544 234678887766555555433332 5566666665
Q ss_pred hhhcCCCChHHHhh
Q 006763 468 NATVETDNPDLRDR 481 (632)
Q Consensus 468 ~~~~~s~~~dvrdR 481 (632)
... ..+++||--
T Consensus 486 ~f~--~E~~~Vqlq 497 (746)
T PTZ00429 486 TIM--EHEQRVQLA 497 (746)
T ss_pred hhc--cCCHHHHHH
Confidence 432 356778643
No 14
>PRK09687 putative lyase; Provisional
Probab=99.14 E-value=2.4e-09 Score=110.79 Aligned_cols=251 Identities=16% Similarity=0.140 Sum_probs=162.8
Q ss_pred HHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHH
Q 006763 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (632)
Q Consensus 47 ~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~ 126 (632)
.++.|.+=|.|+|..+|..|+..|+.++.+++.+. +.+++.|.++.||+.|+.++..+-..... . ...++.|.
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~----l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~-~~a~~~L~ 96 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRL----AIELCSSKNPIERDIGADILSQLGMAKRC--Q-DNVFNILN 96 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHH----HHHHHhCCCHHHHHHHHHHHHhcCCCccc--h-HHHHHHHH
Confidence 45667777899999999999999999998777665 66678999999999999999987542211 1 12557777
Q ss_pred HH-hcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHH
Q 006763 127 DL-ISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP 205 (632)
Q Consensus 127 ~l-L~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~ 205 (632)
.+ ++|+++.|..+|+.+|..++.... .|. ...++.+..
T Consensus 97 ~l~~~D~d~~VR~~A~~aLG~~~~~~~----------------------~~~-------------------~~a~~~l~~ 135 (280)
T PRK09687 97 NLALEDKSACVRASAINATGHRCKKNP----------------------LYS-------------------PKIVEQSQI 135 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhccccccc----------------------ccc-------------------hHHHHHHHH
Confidence 66 789999999999999988753221 010 012333334
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCccchhcccceeEe
Q 006763 206 RLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFC 284 (632)
Q Consensus 206 ~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~ 284 (632)
.+.+.++-|.+.++..+..+ .+++. ++.|+.+++ .++.+|+.+...|..+....|..+..-+ ..
T Consensus 136 ~~~D~~~~VR~~a~~aLg~~----~~~~a--------i~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~---~~ 200 (280)
T PRK09687 136 TAFDKSTNVRFAVAFALSVI----NDEAA--------IPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFV---AM 200 (280)
T ss_pred HhhCCCHHHHHHHHHHHhcc----CCHHH--------HHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHH---HH
Confidence 56666777777777776542 34432 334455553 5667777777777776323343332211 12
Q ss_pred ccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh-hhchh
Q 006763 285 KYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK-IKVNY 363 (632)
Q Consensus 285 l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~-~~~~~ 363 (632)
+.+++..||..++.-|-++.++. .++-|.+++.+.+ ++..++.++|.++. +..+..|..++. ....+
T Consensus 201 L~D~~~~VR~~A~~aLg~~~~~~----av~~Li~~L~~~~--~~~~a~~ALg~ig~------~~a~p~L~~l~~~~~d~~ 268 (280)
T PRK09687 201 LQDKNEEIRIEAIIGLALRKDKR----VLSVLIKELKKGT--VGDLIIEAAGELGD------KTLLPVLDTLLYKFDDNE 268 (280)
T ss_pred hcCCChHHHHHHHHHHHccCChh----HHHHHHHHHcCCc--hHHHHHHHHHhcCC------HhHHHHHHHHHhhCCChh
Confidence 34666788888888887777654 4444444444433 56677888887774 256666777665 44445
Q ss_pred hHHHHHHHH
Q 006763 364 VVQEAIIVI 372 (632)
Q Consensus 364 v~~e~i~~l 372 (632)
+...++..+
T Consensus 269 v~~~a~~a~ 277 (280)
T PRK09687 269 IITKAIDKL 277 (280)
T ss_pred HHHHHHHHH
Confidence 555554443
No 15
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.12 E-value=1.6e-08 Score=120.87 Aligned_cols=255 Identities=18% Similarity=0.176 Sum_probs=142.4
Q ss_pred HHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHH
Q 006763 61 LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANA 140 (632)
Q Consensus 61 ~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~A 140 (632)
..|-+|+.+|. .+ ..+.+.+.|.|++|.||+.|+.++.++.. | ..++.|..+|+|.|+.|...|
T Consensus 609 ~~~~~~~~~l~---~~-----~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--~------~~~~~L~~aL~D~d~~VR~~A 672 (897)
T PRK13800 609 SPRILAVLALD---AP-----SVAELAPYLADPDPGVRRTAVAVLTETTP--P------GFGPALVAALGDGAAAVRRAA 672 (897)
T ss_pred hHHHHHHHhcc---ch-----hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--h------hHHHHHHHHHcCCCHHHHHHH
Confidence 44445666652 22 23356667778888888888888777641 1 345667777788888888888
Q ss_pred HHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 006763 141 VAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVK 220 (632)
Q Consensus 141 l~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik 220 (632)
+.+|.++....+. ...|...|.+.+++.+...++.|......+. ..+...|++.++.|..+|++
T Consensus 673 a~aL~~l~~~~~~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 673 AEGLRELVEVLPP---------APALRDHLGSPDPVVRAAALDVLRALRAGDA-------ALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred HHHHHHHHhccCc---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------HHHHHHhcCCCHHHHHHHHH
Confidence 8887777432211 1234445556677777777777765543322 12334677777777777777
Q ss_pred HHHHhhhccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHH
Q 006763 221 MILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEI 299 (632)
Q Consensus 221 ~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~l 299 (632)
.+..+ ..++ .|..++ ..++++|..+.+.|..+....+..+... ...+.+++..||..++..
T Consensus 737 aL~~~----~~~~-----------~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L---~~ll~D~d~~VR~aA~~a 798 (897)
T PRK13800 737 ALVSV----DDVE-----------SVAGAATDENREVRIAVAKGLATLGAGGAPAGDAV---RALTGDPDPLVRAAALAA 798 (897)
T ss_pred HHhcc----cCcH-----------HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHH---HHHhcCCCHHHHHHHHHH
Confidence 76642 1221 122334 3466777777776666654433211110 012334456666666666
Q ss_pred HHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Q 006763 300 MIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKD 374 (632)
Q Consensus 300 L~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ 374 (632)
|-.+.++.. +...+...+.+.|..++..++++++.+. .+..++.|+.++++....|..+++..|..
T Consensus 799 Lg~~g~~~~---~~~~l~~aL~d~d~~VR~~Aa~aL~~l~------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 799 LAELGCPPD---DVAAATAALRASAWQVRQGAARALAGAA------ADVAVPALVEALTDPHLDVRKAAVLALTR 864 (897)
T ss_pred HHhcCCcch---hHHHHHHHhcCCChHHHHHHHHHHHhcc------ccchHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 666655432 2233444555556666666666666543 12344555555555555555555555444
No 16
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.12 E-value=1e-08 Score=122.66 Aligned_cols=273 Identities=18% Similarity=0.156 Sum_probs=202.9
Q ss_pred HHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHH
Q 006763 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (632)
Q Consensus 47 ~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~ 126 (632)
.++.|..-|.|++|.+|-.|+..|+.+..++.++ .|.+.|.|+++.||..|+.++.++-...+. .+.+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~----~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~L~ 690 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGFGP----ALVAALGDGAAAVRRAAAEGLRELVEVLPP-------APALR 690 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHH----HHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHHHH
Confidence 4578888899999999999999999999877544 577888999999999999999887432221 25677
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHh
Q 006763 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR 206 (632)
Q Consensus 127 ~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~ 206 (632)
.+|.|.|+.|..+|+.+|..+...+ ...|+..+.+.+++.+...++.|...... +.+...
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~---------~~l~~~ 750 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDDV---------ESVAGA 750 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccCc---------HHHHHH
Confidence 7889999999999999888764221 12356778899999999999999876431 234567
Q ss_pred hcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCccchhcccceeEec
Q 006763 207 LQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCK 285 (632)
Q Consensus 207 L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l 285 (632)
+.+.++.|...+++.+..+.. ... ...+.|..++. .++++|..++..|..+.... ..... ....+
T Consensus 751 l~D~~~~VR~~aa~aL~~~~~----~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~-~~~~~---l~~aL 816 (897)
T PRK13800 751 ATDENREVRIAVAKGLATLGA----GGA------PAGDAVRALTGDPDPLVRAAALAALAELGCPP-DDVAA---ATAAL 816 (897)
T ss_pred hcCCCHHHHHHHHHHHHHhcc----ccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-hhHHH---HHHHh
Confidence 899999999999999887532 111 01234556774 68999999999998875421 11111 12235
Q ss_pred cCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhH
Q 006763 286 YNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVV 365 (632)
Q Consensus 286 ~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~ 365 (632)
.+++..||..+++.|..+.+++ .+.-|..-+.+.+..+++.++++++.+. ......+.|...++.....|.
T Consensus 817 ~d~d~~VR~~Aa~aL~~l~~~~----a~~~L~~~L~D~~~~VR~~A~~aL~~~~-----~~~~a~~~L~~al~D~d~~Vr 887 (897)
T PRK13800 817 RASAWQVRQGAARALAGAAADV----AVPALVEALTDPHLDVRKAAVLALTRWP-----GDPAARDALTTALTDSDADVR 887 (897)
T ss_pred cCCChHHHHHHHHHHHhccccc----hHHHHHHHhcCCCHHHHHHHHHHHhccC-----CCHHHHHHHHHHHhCCCHHHH
Confidence 6777899999999999987654 4455666678999999999999999862 123456677788888777788
Q ss_pred HHHHHHHH
Q 006763 366 QEAIIVIK 373 (632)
Q Consensus 366 ~e~i~~l~ 373 (632)
.+++..+.
T Consensus 888 ~~A~~aL~ 895 (897)
T PRK13800 888 AYARRALA 895 (897)
T ss_pred HHHHHHHh
Confidence 87776654
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.08 E-value=2.8e-07 Score=114.34 Aligned_cols=441 Identities=14% Similarity=0.145 Sum_probs=282.8
Q ss_pred HHHHHhhcCCCChHH-HhHHHHHhcC-CCchhh---HH--HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccc---cc
Q 006763 48 VNTFVKDSQDPNPLI-RALAVRTMGC-IRVDKI---TE--YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VE 117 (632)
Q Consensus 48 iNtl~kDl~~~np~i-r~lALr~L~~-I~~~ei---~~--~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~---v~ 117 (632)
+.+|.+=+.++||.. ...+..+|.+ +.++.. +. ...+.+..++...+.-++..|+.|+..+...+++. +.
T Consensus 364 ~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi 443 (2102)
T PLN03200 364 EQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALG 443 (2102)
T ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 456777777776653 5555555433 233322 22 23456778888888999999999999888665543 33
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhc-cHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHH
Q 006763 118 DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA 196 (632)
Q Consensus 118 ~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~ 196 (632)
+.+.++.|.++|...+..+...|+.++.-|...+......+ ....+..|++.|...++-.|-.....|...+..+ ++.
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~-~qi 522 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS-EDI 522 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc-HHH
Confidence 45678999999998899999999988888875442222211 2234666777776666666666666666665432 222
Q ss_pred HH------HHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHh
Q 006763 197 EN------IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQ 269 (632)
Q Consensus 197 ~~------il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~ 269 (632)
.. .+..+...|++.+.-+.-+|+.++.++... .+.+.+ ++++.++ +.+++++-.+++.+..|+.
T Consensus 523 r~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~-~d~~~I--------~~Lv~LLlsdd~~~~~~aL~vLgnIls 593 (2102)
T PLN03200 523 RACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT-ADAATI--------SQLTALLLGDLPESKVHVLDVLGHVLS 593 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-cchhHH--------HHHHHHhcCCChhHHHHHHHHHHHHHh
Confidence 22 355666788888888899999999887542 233322 3455556 5788999989998877765
Q ss_pred hCcc--chh------cccc-eeEeccCCchhHHHHHHHHHHHhcCc--ccHH-----HHHHHHHHhhhhcCHHHHHHHHH
Q 006763 270 RRPT--ILA------HEIK-VFFCKYNDPIYVKMEKLEIMIKLASD--RNID-----QVLLEFKEYATEVDVDFVRKAVR 333 (632)
Q Consensus 270 ~~p~--~~~------~~~~-~f~~l~~dd~~Ik~~kL~lL~~L~n~--~Ni~-----~Iv~EL~~yl~~~d~~~~~~~i~ 333 (632)
.-.. .+. .-+. ....+.+++..+|..+..+|..++.. +++. .++.-|.+.++..+.+.++++..
T Consensus 594 l~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~ 673 (2102)
T PLN03200 594 VASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSAR 673 (2102)
T ss_pred hcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHH
Confidence 2211 111 1112 22346677889999999999999863 3333 24567778888889999999999
Q ss_pred HHHHHHHhhhh------hHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCccc----HHHHHHHHHHhhccCChhhHH
Q 006763 334 AIGRCAIKLER------AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT----YESIIATLCESLDTLDEPEAK 403 (632)
Q Consensus 334 aIg~la~k~~~------~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~----~~~ii~~L~~~l~~i~~p~a~ 403 (632)
+|+.++..... ...-++..|+++++.....+.+.+...+.++++..... .+.++..|.+.+.+ ..++.|
T Consensus 674 AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~-G~~~~k 752 (2102)
T PLN03200 674 ALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLRE-GTLEGK 752 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHh-CChHHH
Confidence 99999853221 12346889999999988899999999999998653222 24557788888865 467889
Q ss_pred HHHHHHHhcccCccCCHH---H------HHH---HHhhhCCCCCHHH--HHHHHHHHHHH-------------hhcCCCC
Q 006763 404 ASMIWIIGEYAERIDNAD---E------LLE---SFLESFPEEPAQV--QLQLLTATVKL-------------FLKKPTE 456 (632)
Q Consensus 404 ~~~iWiLGEy~~~i~~~~---~------~l~---~l~~~f~~e~~~v--q~~iLta~~Kl-------------~~~~p~e 456 (632)
..++|.+.+-+...+... + .+. .+++....+...+ -+..|..++|. +...|+
T Consensus 753 ~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~- 831 (2102)
T PLN03200 753 RNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPS- 831 (2102)
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccC-
Confidence 999999988765543111 1 111 2233333344433 33455555553 111222
Q ss_pred ChHHHHHHHHHhhhcCCCChHHHhhHHHHHH-HhcCCH---------------HHHHhhhccCCCC
Q 006763 457 GPQQMIQVVLNNATVETDNPDLRDRAYIYWR-LLSTDP---------------EAAKDVVLAEKPV 506 (632)
Q Consensus 457 ~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~-LL~~~~---------------~~~~~ivl~~~p~ 506 (632)
++.++++.+ ...+|++||+|.+... |.+..| ..|.+|+.+..+.
T Consensus 832 ~l~~l~~~l------~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 891 (2102)
T PLN03200 832 SLEPLVRCL------AEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLE 891 (2102)
T ss_pred chHHHHHHH------HcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCce
Confidence 234444433 2468999999998765 433332 2566777665554
No 18
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=99.06 E-value=5e-09 Score=101.31 Aligned_cols=146 Identities=27% Similarity=0.471 Sum_probs=113.8
Q ss_pred ChHHHhHHHHHhc--CCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhH
Q 006763 59 NPLIRALAVRTMG--CIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (632)
Q Consensus 59 np~ir~lALr~L~--~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~V 136 (632)
||.+|+.|+.+|| .++-|.+++...+.+.++|.|++|+|||+|++++.++...+.-.++. .++..+..++.|.|+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~-~l~~~~l~~l~D~~~~I 79 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG-QLFSRILKLLVDENPEI 79 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh-hhhHHHHHHHcCCCHHH
Confidence 6899999999999 67889999999999999999999999999999999999887776664 34456667889999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhh---------HHHHHHHHhccccCCHHHHHHHHHHHHHhh
Q 006763 137 VANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWG---------QVFILDALSRYKAADAREAENIVERVTPRL 207 (632)
Q Consensus 137 v~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~---------qi~lL~lL~~y~~~~~~~~~~il~~v~~~L 207 (632)
...|...|.++.....+ ..+...+..++..++.+.+|. ...+++++-.+... ++..+.+++++...+
T Consensus 80 r~~A~~~~~e~~~~~~~---~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~kl~~~~ 155 (178)
T PF12717_consen 80 RSLARSFFSELLKKRNP---NIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVEKLCQRF 155 (178)
T ss_pred HHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHH
Confidence 99999999999887322 223455667777777776664 34666777666543 445566666666555
Q ss_pred cC
Q 006763 208 QH 209 (632)
Q Consensus 208 ~~ 209 (632)
.+
T Consensus 156 ~~ 157 (178)
T PF12717_consen 156 LN 157 (178)
T ss_pred HH
Confidence 44
No 19
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.01 E-value=6.1e-07 Score=111.43 Aligned_cols=321 Identities=16% Similarity=0.167 Sum_probs=206.5
Q ss_pred HHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHH-----HHHHHHhhcCCCChHHHhHHHHHhcCCC--chhhHH-----H
Q 006763 14 VVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITE-----Y 81 (632)
Q Consensus 14 vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL-----~iNtl~kDl~~~np~ir~lALr~L~~I~--~~ei~~-----~ 81 (632)
.+.++.+.+.+.+.=+-..+..+.+.+.+.... .++.|.+-|.++++.+|-.|++++++|. +++-.. -
T Consensus 409 LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaG 488 (2102)
T PLN03200 409 LVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAG 488 (2102)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 344556666677776667777777666663332 4677889999999999999999998885 333332 4
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHhhhhccc---cccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhc
Q 006763 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (632)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~---~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l 158 (632)
.+|.+.++|.++++.+|+.|+.++..+....++ .+.+.+.++.|.++|++.++.+...|+.+|..+......
T Consensus 489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~----- 563 (2102)
T PLN03200 489 GIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA----- 563 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-----
Confidence 568999999999999999999999998764332 343457788899999999999999999999998765322
Q ss_pred cHHHHHHHHHHhhccChhhHHHHHHHHhcccc-CCHHH-------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccC
Q 006763 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKA-ADARE-------AENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (632)
Q Consensus 159 ~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~-~~~~~-------~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~ 230 (632)
..+..++..+...++-.+...++.+..... .+..+ ....++.+..+|+|.+..+.-+|+.++.++...
T Consensus 564 --~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~-- 639 (2102)
T PLN03200 564 --ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS-- 639 (2102)
T ss_pred --hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--
Confidence 234556666666666666777888765432 11111 124678888899999999999999999887542
Q ss_pred ChHHHHH-HHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCc--c---chhcc-cce-eEeccCCchhHHHHHHHHHH
Q 006763 231 STDVVRN-LCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP--T---ILAHE-IKV-FFCKYNDPIYVKMEKLEIMI 301 (632)
Q Consensus 231 ~~~~~~~-~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p--~---~~~~~-~~~-f~~l~~dd~~Ik~~kL~lL~ 301 (632)
+++.... +....++|++.+++ ++.+++.-+-..|..+..... + +++.. ++. ...+.+.+..++..+++.|.
T Consensus 640 ~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALa 719 (2102)
T PLN03200 640 RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALA 719 (2102)
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence 4443332 23466788888885 567777777777777663211 0 11111 111 11223344455555555555
Q ss_pred HhcCcc-cHHH-----HHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhh
Q 006763 302 KLASDR-NIDQ-----VLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE 343 (632)
Q Consensus 302 ~L~n~~-Ni~~-----Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~ 343 (632)
.++... +... ++.-|.+++++.+++-++.++.++..++..++
T Consensus 720 nLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 720 NLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 544332 2211 23444455555555555555555555555544
No 20
>PRK09687 putative lyase; Provisional
Probab=99.00 E-value=1.4e-07 Score=97.67 Aligned_cols=191 Identities=16% Similarity=0.137 Sum_probs=141.6
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhh-HHHHHHHHHhh-h
Q 006763 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI-TEYLCDPLQRC-L 90 (632)
Q Consensus 13 ~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei-~~~l~~~v~~~-L 90 (632)
+.++++.++|..++.-+--.+..+. .++.. ..+.+-++|+|+.+|..|.+.|+.++.+.- .+...+.+... +
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~--~~~~~----~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~ 100 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRG--GQDVF----RLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL 100 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcC--cchHH----HHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh
Confidence 3455778888888887777776553 33433 334445789999999999999999986542 24455666666 7
Q ss_pred CCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHh
Q 006763 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL 170 (632)
Q Consensus 91 ~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l 170 (632)
.|+++.||+.|+.++.++....+... ...++.+..++.|.++.|...|+.+|.++.. ...+..|+..+
T Consensus 101 ~D~d~~VR~~A~~aLG~~~~~~~~~~--~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L 168 (280)
T PRK09687 101 EDKSACVRASAINATGHRCKKNPLYS--PKIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIPLLINLL 168 (280)
T ss_pred cCCCHHHHHHHHHHHhcccccccccc--hHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHh
Confidence 89999999999999998754332221 2366778888999999999999999977632 23567788888
Q ss_pred hccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006763 171 NECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (632)
Q Consensus 171 ~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~ 225 (632)
.+.++|........|......++ ...+.+...|++.|..|..+|+..+..+
T Consensus 169 ~d~~~~VR~~A~~aLg~~~~~~~----~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 169 KDPNGDVRNWAAFALNSNKYDNP----DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred cCCCHHHHHHHHHHHhcCCCCCH----HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 88899988888888887744333 3455666778899999999999988763
No 21
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.7e-05 Score=92.46 Aligned_cols=522 Identities=15% Similarity=0.187 Sum_probs=310.8
Q ss_pred chhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc-CCCChHHHhHHHHHhcCCC-------chhhHH
Q 006763 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDS-QDPNPLIRALAVRTMGCIR-------VDKITE 80 (632)
Q Consensus 9 ~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl-~~~np~ir~lALr~L~~I~-------~~ei~~ 80 (632)
..|-..+.-+.++|-+.+|=+==.+.+.+...+ + .+.|..=+ .+.||.+|.+|.=.+-++. +.+.-+
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-~----l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~ 78 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTEP-L----LPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQ 78 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc-h----HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 345666776777888888888888887777766 2 23333323 3568899999864444332 345556
Q ss_pred HHHHHHHhhhCC-CChHHHHHHHHHHHHhhhhc-cccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhc
Q 006763 81 YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (632)
Q Consensus 81 ~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~~~-p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l 158 (632)
.+-..+..++.+ +.+-||||-+-.+.-+.+.. |+ .=+++++.|.+..++.|+...-.|+..|..+...-+......
T Consensus 79 siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e--~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~ 156 (1075)
T KOG2171|consen 79 SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE--KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH 156 (1075)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh
Confidence 666666666666 89999999999999998753 33 211345556677789999999999999988754433211111
Q ss_pred cHHHHHHH-HHHhhccChhhHHHHHHHHhccccC---CHHHHH-------HHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q 006763 159 TSHTLSKL-LTALNECTEWGQVFILDALSRYKAA---DAREAE-------NIVERVTPRLQHANCAVVLSAVKMILQQME 227 (632)
Q Consensus 159 ~~~~~~~L-l~~l~~~~ew~qi~lL~lL~~y~~~---~~~~~~-------~il~~v~~~L~~~n~aVv~eaik~i~~~~~ 227 (632)
+. .+..+ .+.+.+.+--..+.-++.+..|... +..+.. .+++.+.+.++..+....-++..++..++.
T Consensus 157 ~~-~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e 235 (1075)
T KOG2171|consen 157 LD-DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE 235 (1075)
T ss_pred HH-HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh
Confidence 11 22222 2335554333666777777766533 233332 234444455666666555666666665543
Q ss_pred ccCChHHHHHHHHhcccchhhhc-cC--chhHHHHHHHHHHHHHhhCccchhcc-------c----ce----------e-
Q 006763 228 LITSTDVVRNLCKKMAPPLVTLL-SA--EPEIQYVALRNINLIVQRRPTILAHE-------I----KV----------F- 282 (632)
Q Consensus 228 ~i~~~~~~~~~~~~~~~~L~~Ll-s~--~~niryvaL~~l~~i~~~~p~~~~~~-------~----~~----------f- 282 (632)
..+..++.....++..-..+. ++ ++.+|..||+.|..++..-|...+.+ + .. .
T Consensus 236 --~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~ 313 (1075)
T KOG2171|consen 236 --SEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSN 313 (1075)
T ss_pred --hchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcc
Confidence 256666655444444222233 32 67899999999988776533222111 0 00 0
Q ss_pred -Eec----cCCchhHHHHHHHHHHH-hcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhh----hhHHHHHHH
Q 006763 283 -FCK----YNDPIYVKMEKLEIMIK-LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISV 352 (632)
Q Consensus 283 -~~l----~~dd~~Ik~~kL~lL~~-L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~----~~~~~~v~~ 352 (632)
.-. +++|..+-.++||.|.. |.-+.=...+++.+..++++.+-..|..++.+|+.+++--+ +..+.+++.
T Consensus 314 ~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~ 393 (1075)
T KOG2171|consen 314 EDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPI 393 (1075)
T ss_pred ccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 011 12234455666666543 33344455677777788899999999999999999887543 445677888
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHhhC-cccH----HHHHHHHHHhhccCChhhHHHHHHHHHhcccCccCC------HH
Q 006763 353 LLELIKIKVNYVVQEAIIVIKDIFRRY-PNTY----ESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN------AD 421 (632)
Q Consensus 353 Ll~ll~~~~~~v~~e~i~~l~~ilr~~-p~~~----~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~------~~ 421 (632)
.++.+.+..+-|...+...+.++-... |+.+ +.+...|...+++...+.+.+..+-.+=.|.+.++. -+
T Consensus 394 Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd 473 (1075)
T KOG2171|consen 394 VLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD 473 (1075)
T ss_pred HHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 888888888889999999988886543 4443 344556666677777777754444333334333322 12
Q ss_pred HHHHH-HhhhCCCCCHHHHHHHHHHHHHHhhcCCCC------ChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcCC--
Q 006763 422 ELLES-FLESFPEEPAQVQLQLLTATVKLFLKKPTE------GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTD-- 492 (632)
Q Consensus 422 ~~l~~-l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e------~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~~-- 492 (632)
.+++. +.--....++.||.+.+||++-++....+. ..-+.+.++++.+. +.+..++|-...+...++..-
T Consensus 474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~-~~d~r~LrgktmEcisli~~AVG 552 (1075)
T KOG2171|consen 474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD-DKDLRELRGKTMECLSLIARAVG 552 (1075)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC-chhhHHHHhhHHHHHHHHHHHhh
Confidence 34442 222234568999999999999887654321 13345555666533 234566777777777776541
Q ss_pred H----HHHHhhhccCCCCCCCCCCcCCHHHHHHHHHhcCccccccccChhhhhc
Q 006763 493 P----EAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVT 542 (632)
Q Consensus 493 ~----~~~~~ivl~~~p~~~~~~~~~~~~~l~~l~~~~~tls~vy~kp~~~~~~ 542 (632)
. +.+..++.--.-.- ......+..+..-++.-.+-+..+|++.-..|..
T Consensus 553 ke~F~~~a~eliqll~~~~-~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~ 605 (1075)
T KOG2171|consen 553 KEKFLPLAEELIQLLLELQ-GSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLP 605 (1075)
T ss_pred hhhhhHhHHHHHHHHHhhc-ccchhhccccHHHHHHHHHHHHHHhchhhHhHHH
Confidence 1 12222221110000 1112234445566666677788888887666643
No 22
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=6e-06 Score=96.07 Aligned_cols=428 Identities=16% Similarity=0.209 Sum_probs=273.4
Q ss_pred HHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHhhhh-ccccccc--cchH-HHH
Q 006763 51 FVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI-NAELVED--RGFL-ESL 125 (632)
Q Consensus 51 l~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~~-~p~~v~~--~~~~-~~L 125 (632)
|..-+.+++-.+|.-|=+++.++..++= +.+.+...+.. .+|-||..|+.=+-|+... .+.+-.+ ..+. ..|
T Consensus 9 Ll~~l~spDn~vr~~Ae~~l~~~~~~~~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL 85 (1075)
T KOG2171|consen 9 LLQQLLSPDNEVRRQAEEALETLAKTEP---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLL 85 (1075)
T ss_pred HHHHhcCCCchHHHHHHHHHHHhhcccc---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 3445666766779999999887643322 56666666655 8999999999988887654 3333221 1222 333
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhcc---c-cCCHHHHHHHHH
Q 006763 126 KDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRY---K-AADAREAENIVE 201 (632)
Q Consensus 126 ~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y---~-~~~~~~~~~il~ 201 (632)
.....+..++|.-.-.-++.+|..+.-...|. ..+.-|....+..++=.+-..+.+|... . ........++..
T Consensus 86 ~~~~~E~~~~vr~k~~dviAeia~~~l~e~WP---ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~ 162 (1075)
T KOG2171|consen 86 EIIQSETEPSVRHKLADVIAEIARNDLPEKWP---ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLR 162 (1075)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhccccchH---HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHH
Confidence 44556888888877777888888766433452 2344455556666766665555555433 2 222223445666
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhhccC-ChHHHHHHHHhcccchhhhc-----cCchhHHHHHHHHHHHHHhhCccch
Q 006763 202 RVTPRLQHANCAVVLSAVKMILQQMELIT-STDVVRNLCKKMAPPLVTLL-----SAEPEIQYVALRNINLIVQRRPTIL 275 (632)
Q Consensus 202 ~v~~~L~~~n~aVv~eaik~i~~~~~~i~-~~~~~~~~~~~~~~~L~~Ll-----s~~~niryvaL~~l~~i~~~~p~~~ 275 (632)
.+..++...+..|...+++.+..+..+.+ +.+..+. +..+.+.++..+ ..+...---+|..+..++...|.++
T Consensus 163 lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~-~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l 241 (1075)
T KOG2171|consen 163 LFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDK-FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL 241 (1075)
T ss_pred HHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHH-HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence 66677887777799999999998877664 3433333 233445444333 2344456788999999999999999
Q ss_pred hcccc-ee-Ee-----ccCCchhHHHHHHHHHHHhcCc------cc---HHHHHHHHHHhhhhcC-------------HH
Q 006763 276 AHEIK-VF-FC-----KYNDPIYVKMEKLEIMIKLASD------RN---IDQVLLEFKEYATEVD-------------VD 326 (632)
Q Consensus 276 ~~~~~-~f-~~-----l~~dd~~Ik~~kL~lL~~L~n~------~N---i~~Iv~EL~~yl~~~d-------------~~ 326 (632)
.+|+. ++ || -.+=+..+|..+|++|..++.- .+ ...++.-++.-+++.+ ++
T Consensus 242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~ 321 (1075)
T KOG2171|consen 242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD 321 (1075)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence 99875 22 22 2233478999999999887643 11 2344555555444321 11
Q ss_pred ---HHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHH----HHHHHHHhhccC
Q 006763 327 ---FVRKAVRAIGRCAIKLERA--AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYES----IIATLCESLDTL 397 (632)
Q Consensus 327 ---~~~~~i~aIg~la~k~~~~--~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~----ii~~L~~~l~~i 397 (632)
-.+-+.++|-++|.+.++. ..-.+..+-.++.....+-+..++.++.-+....++.-.. ++...+..+.+
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D- 400 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND- 400 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC-
Confidence 3456778888899888643 4456677777888888888888888887777666554333 34444444544
Q ss_pred ChhhHHHHHHHHHhcccCccCC------HHHHHHHHhhhC-CCCCHHHHHHHHHHHHHHhhcCCCCChHH----HHHHHH
Q 006763 398 DEPEAKASMIWIIGEYAERIDN------ADELLESFLESF-PEEPAQVQLQLLTATVKLFLKKPTEGPQQ----MIQVVL 466 (632)
Q Consensus 398 ~~p~a~~~~iWiLGEy~~~i~~------~~~~l~~l~~~f-~~e~~~vq~~iLta~~Kl~~~~p~e~~~~----~v~~ll 466 (632)
.+|.++-+++..+|+++..+.. ...++..++... ..+++.||...-.|+.-++-.++.+.+.+ ++++.|
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l 480 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL 480 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 4688899999999999876532 122222333322 24578999999999999988877543333 344344
Q ss_pred HhhhcCCCChHHHhhHHHHHH
Q 006763 467 NNATVETDNPDLRDRAYIYWR 487 (632)
Q Consensus 467 ~~~~~~s~~~dvrdRA~~y~~ 487 (632)
... .++..+.||..+.--..
T Consensus 481 ~~L-~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 481 LLL-LQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred HHH-hcCCchhHHHHHHHHHH
Confidence 443 35678999988774433
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.83 E-value=2.3e-05 Score=88.07 Aligned_cols=285 Identities=15% Similarity=0.190 Sum_probs=182.2
Q ss_pred HHhhcCCCChHHHhHHHHHhcC----CCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccc---cccccchHH
Q 006763 51 FVKDSQDPNPLIRALAVRTMGC----IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLE 123 (632)
Q Consensus 51 l~kDl~~~np~ir~lALr~L~~----I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~---~v~~~~~~~ 123 (632)
+-..+++.|.....++.+.|.. ....++.+...+.+.++|.|+++.||.-|+..+.++.+.... .+.+.+++.
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 4555555555555555544433 344566888999999999999999999999999998876543 334457889
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhc-cHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHH----
Q 006763 124 SLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN---- 198 (632)
Q Consensus 124 ~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~---- 198 (632)
.+..+|.|.|..|...|..+|..+..+.... -.+ ......+|-+.+..+++=.++.+++++......+++....
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~s 201 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNS 201 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhc
Confidence 9999999999999999999999998765321 111 1112344444455568888999999999887766654432
Q ss_pred -HHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHH-hcccchhhhcc---Cch---hHHHHHH-HHHHHHHh
Q 006763 199 -IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS---AEP---EIQYVAL-RNINLIVQ 269 (632)
Q Consensus 199 -il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~-~~~~~L~~Lls---~~~---niryvaL-~~l~~i~~ 269 (632)
+++.+...+.+.+.-|.+.|+.++..+.. .++..+-+.+ .+.+.|..++. .+| .+-..+. +-...+..
T Consensus 202 gll~~ll~eL~~dDiLvqlnalell~~La~---~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 202 GLLDLLLKELDSDDILVQLNALELLSELAE---TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred cHHHHHHHHhcCccHHHHHHHHHHHHHHHc---ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 56677777888888999999999988753 3333332221 23344555552 244 2222222 44444554
Q ss_pred hCccch-hcc---cc-eeEeccCCchhHHHHHHHHHHHhcCcccHHHH------------HHHHHHhhhhcCHHHHHHHH
Q 006763 270 RRPTIL-AHE---IK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQV------------LLEFKEYATEVDVDFVRKAV 332 (632)
Q Consensus 270 ~~p~~~-~~~---~~-~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~I------------v~EL~~yl~~~d~~~~~~~i 332 (632)
..|.-+ ..+ +. .|.+..+.|..++..|+|.+-.++...--... ++.+..+.+....+++..++
T Consensus 279 ~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l 358 (503)
T PF10508_consen 279 VSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRAL 358 (503)
T ss_pred cChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 344332 221 11 24455677888999999999888855433333 33333444444555555555
Q ss_pred HHHHHHH
Q 006763 333 RAIGRCA 339 (632)
Q Consensus 333 ~aIg~la 339 (632)
.+++.+-
T Consensus 359 ~al~~il 365 (503)
T PF10508_consen 359 HALASIL 365 (503)
T ss_pred HHHHHHH
Confidence 5555553
No 24
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=7e-07 Score=97.77 Aligned_cols=408 Identities=17% Similarity=0.213 Sum_probs=241.7
Q ss_pred hHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccc--cchHHHHHHHhcCCChhHHHHHH
Q 006763 64 ALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAV 141 (632)
Q Consensus 64 ~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~--~~~~~~L~~lL~D~d~~Vv~~Al 141 (632)
+.||..|+++-..++.+.+.|.+++.|.+..+.||-.+++|+.-+..-+-+-+.+ +.+++.+..+|.|+-|.|..-+.
T Consensus 376 AAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 376 AAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeee
Confidence 5789999999999999999999999999999999999999999887643222111 13788999999999999987666
Q ss_pred HHHHHHHhcC-CCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHH-------hhcCCCHH
Q 006763 142 AALAEIEENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP-------RLQHANCA 213 (632)
Q Consensus 142 ~aL~eI~~~~-~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~-------~L~~~n~a 213 (632)
=.|......- ..+.-+...+.+..|++.+-+.+-|-|-.-...++.+.-.-.++.-..++.+.+ .-|+.|--
T Consensus 456 WTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLl 535 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLL 535 (885)
T ss_pred eeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhccee
Confidence 6665543321 111224456678888888889999999877777776643222222222333332 23789999
Q ss_pred HHHHHHHHHHHhh-hccCChHHHHHHHHhcccchhh---hccCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCc
Q 006763 214 VVLSAVKMILQQM-ELITSTDVVRNLCKKMAPPLVT---LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDP 289 (632)
Q Consensus 214 Vv~eaik~i~~~~-~~i~~~~~~~~~~~~~~~~L~~---Lls~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd 289 (632)
|+|.|+.++-... ..++.+..++ -+.+||+. +++.+.---|--|+++..++..-..-|.++. .+
T Consensus 536 ILYDAIgtlAdsvg~~Ln~~~Yiq----iLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~--------~~ 603 (885)
T KOG2023|consen 536 ILYDAIGTLADSVGHALNKPAYIQ----ILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYA--------QP 603 (885)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHH----HhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccC--------HH
Confidence 9999999876432 1233555444 46888874 4554333346778888888765444443322 22
Q ss_pred hhHHHHHHHHHHHh----cCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHhh
Q 006763 290 IYVKMEKLEIMIKL----ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA------AERCISVLLELIKI 359 (632)
Q Consensus 290 ~~Ik~~kL~lL~~L----~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~------~~~~v~~Ll~ll~~ 359 (632)
.| .+..+|+.+. +...+-.. ....|.+|..-+..-+.-+++-.+.- .....+.|+..+..
T Consensus 604 Vy--~Rc~~il~~t~q~~~~~~~~~~--------~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D 673 (885)
T KOG2023|consen 604 VY--QRCFRILQKTLQLLAKVQQDPT--------VEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQD 673 (885)
T ss_pred HH--HHHHHHHHHHHHHHHhccCCcc--------ccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhcc
Confidence 22 3344444321 11111000 01134445444444444444443221 12367888899999
Q ss_pred hchhhHHHHHHHHHHHHhhCcccHHHHHHHHHHhhccCChhh---HHHHHHHHHhcccCccCC-----HHHHHHHHhhhC
Q 006763 360 KVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPE---AKASMIWIIGEYAERIDN-----ADELLESFLESF 431 (632)
Q Consensus 360 ~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~---a~~~~iWiLGEy~~~i~~-----~~~~l~~l~~~f 431 (632)
....|++.+--.+.++....++...-.+..+...+..--.|+ +-..++|.+||.+-.... ..-+++.++.-+
T Consensus 674 ~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~ii 753 (885)
T KOG2023|consen 674 EVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITII 753 (885)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHh
Confidence 999999999888888887654332111222222221111222 346679999998866532 123344333222
Q ss_pred CC--CCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhh---cCCCChHHHhhHHH-HHHHhcCCHH
Q 006763 432 PE--EPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNAT---VETDNPDLRDRAYI-YWRLLSTDPE 494 (632)
Q Consensus 432 ~~--e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~---~~s~~~dvrdRA~~-y~~LL~~~~~ 494 (632)
.. .+..+-.-.--++.|+..-+|++ ..+.+..+.+-.+ ..-.|-+-.+-|+. +-.+++.+|.
T Consensus 754 n~~~~~~tllENtAITIGrLg~~~Pe~-vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~ 821 (885)
T KOG2023|consen 754 NRQNTPKTLLENTAITIGRLGYICPEE-VAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPS 821 (885)
T ss_pred cccCchHHHHHhhhhhhhhhhccCHHh-cchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCch
Confidence 21 12222222334678888888876 6666666554322 12234455565654 2334555654
No 25
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=8.2e-05 Score=80.74 Aligned_cols=359 Identities=18% Similarity=0.191 Sum_probs=241.6
Q ss_pred HHHhhcCCCcchHHHHHHHHHHhcC-----CCCcHHHHHHHHHHhhcC-CCCh-----HHHhHHHHHhcC-CCchhhHHH
Q 006763 14 VVNCMQTENLELKKLVYLYLINYAK-----SQPDLAILAVNTFVKDSQ-DPNP-----LIRALAVRTMGC-IRVDKITEY 81 (632)
Q Consensus 14 vi~l~~s~d~~~Krl~YLyl~~~~~-----~~~el~lL~iNtl~kDl~-~~np-----~ir~lALr~L~~-I~~~ei~~~ 81 (632)
+++.+..+-++-||.+-+-+...-+ .+.+-.-=+|..+-+|.. +++. -.-|+|.-++|- .......+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 4555555556666666665555432 334445556777777774 3332 345666665542 233347888
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccccc--ccchHHHHHHHhcCCChhHHHHHHHHHHHHHh----cCCCCc
Q 006763 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE--DRGFLESLKDLISDNNPMVVANAVAALAEIEE----NSSRPI 155 (632)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~--~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~----~~~~~~ 155 (632)
++++|..|+.|.+.-||=-|+.+++.+.+.....+. -+.+.+.+.++..|.|.+|...| -++-.+.+ .+. ..
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~-~t 162 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESA-ST 162 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccc-cc
Confidence 999999999999999999999999988887654433 12455777888889999998766 33333322 221 12
Q ss_pred hhccHHHHHHHHH-HhhccChhhHHHHHHHHhccccCCHHHH----HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccC
Q 006763 156 FEITSHTLSKLLT-ALNECTEWGQVFILDALSRYKAADAREA----ENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (632)
Q Consensus 156 ~~l~~~~~~~Ll~-~l~~~~ew~qi~lL~lL~~y~~~~~~~~----~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~ 230 (632)
|.+ +.+..|++ .+...+|...++++.-+.......+-++ ..+++-+...|..++..|.--|=.++..++..|.
T Consensus 163 FsL--~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 163 FSL--PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred cCH--HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 322 33444443 4556788888888888876543333333 2456666678888999998777776666654443
Q ss_pred -ChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhccc-----ceeEeccCCch-hHHHHHH---HH
Q 006763 231 -STDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEI-----KVFFCKYNDPI-YVKMEKL---EI 299 (632)
Q Consensus 231 -~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~-----~~f~~l~~dd~-~Ik~~kL---~l 299 (632)
+|+..+ ..++++.++.-+ ++++++|-.||..|..+++..|..+-.+. .++-|..+++. ++|-.|- ..
T Consensus 241 s~P~s~d--~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~ 318 (675)
T KOG0212|consen 241 SSPSSMD--YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGL 318 (675)
T ss_pred cCccccC--cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHH
Confidence 333322 234566666555 68999999999999999999887665443 25678877765 4655444 34
Q ss_pred HHHhcCccc------HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHhhhchhhHHHHH
Q 006763 300 MIKLASDRN------IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER----AAERCISVLLELIKIKVNYVVQEAI 369 (632)
Q Consensus 300 L~~L~n~~N------i~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~----~~~~~v~~Ll~ll~~~~~~v~~e~i 369 (632)
|.+++.+.- +..|++-|..|+.+...+-+..+..-|..+-.++|. ....+..+|++-+++..+.|+..+.
T Consensus 319 l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L 398 (675)
T KOG0212|consen 319 LLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLAL 398 (675)
T ss_pred HHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHH
Confidence 566665433 337999999999998889988888888888887764 3567788999999999999888888
Q ss_pred HHHHHHHhh
Q 006763 370 IVIKDIFRR 378 (632)
Q Consensus 370 ~~l~~ilr~ 378 (632)
.++..|...
T Consensus 399 ~lla~i~~s 407 (675)
T KOG0212|consen 399 SLLASICSS 407 (675)
T ss_pred HHHHHHhcC
Confidence 888887753
No 26
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=5.5e-06 Score=90.53 Aligned_cols=257 Identities=21% Similarity=0.211 Sum_probs=183.3
Q ss_pred HHHHHHhhhC-CCChHHHHHHHHHHHHhhhhccc---cccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCC-ch
Q 006763 82 LCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IF 156 (632)
Q Consensus 82 l~~~v~~~L~-d~~pyVRK~A~~al~kl~~~~p~---~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~-~~ 156 (632)
++|.+.+++. +.+|-++--|+.|+..+.....+ .+.+.+-++.+..|+...+..|.-.|+-+|..|..+++.- -+
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~ 189 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDY 189 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHH
Confidence 4566777775 67899999999999999986554 4556688899999999999999999999999998776431 13
Q ss_pred hccHHHHHHHHHHhhccChh-hHHHHHHHHhccc----cCC-HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccC
Q 006763 157 EITSHTLSKLLTALNECTEW-GQVFILDALSRYK----AAD-AREAENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (632)
Q Consensus 157 ~l~~~~~~~Ll~~l~~~~ew-~qi~lL~lL~~y~----~~~-~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~ 230 (632)
-+.+..+..|+..+...++. ..-.+.-.|+.++ |.- -+....++..+..+++|.++-|+-.|+.++.++.+.
T Consensus 190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg-- 267 (514)
T KOG0166|consen 190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG-- 267 (514)
T ss_pred HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--
Confidence 34556677888877666651 1123334444444 222 256678889999999999999999999999987653
Q ss_pred ChHHHHHHH-Hhcccchhhhc-cCchhHHHHHHHHHHHHHhhCcc---chhc--cccee-Eecc-CCchhHHHHHHHHHH
Q 006763 231 STDVVRNLC-KKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPT---ILAH--EIKVF-FCKY-NDPIYVKMEKLEIMI 301 (632)
Q Consensus 231 ~~~~~~~~~-~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~---~~~~--~~~~f-~~l~-~dd~~Ik~~kL~lL~ 301 (632)
..+.++.++ ..+.+.|+.+| +.+++++-.+|+.+..|+.-.-. .+-. -+..| -++. ++...||+++.=++.
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS 347 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence 333343322 24556678888 46889999999999987754321 1111 12222 1344 344569999999999
Q ss_pred HhcCcccHHH--------HHHHHHHhhhhcCHHHHHHHHHHHHHHHHh
Q 006763 302 KLASDRNIDQ--------VLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (632)
Q Consensus 302 ~L~n~~Ni~~--------Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k 341 (632)
.++. .|.++ +++.|.+-+...|...++++..+|+.++..
T Consensus 348 NItA-G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 348 NITA-GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred Hhhc-CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 9775 55433 477888888888999999999999988865
No 27
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=6.6e-06 Score=90.36 Aligned_cols=410 Identities=18% Similarity=0.248 Sum_probs=264.0
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHh-------cCCCchhhHHHHHHH
Q 006763 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTM-------GCIRVDKITEYLCDP 85 (632)
Q Consensus 13 ~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L-------~~I~~~ei~~~l~~~ 85 (632)
.+++...|+|.+.+|-+--.+..+-. .||..=-.| .+.-++++.+...|++|=-.| ..-..++...++-..
T Consensus 17 ~lLk~s~Spn~~~~~~~~~~leq~~~-~pdfnnYL~-~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~ 94 (885)
T KOG2023|consen 17 QLLKNSQSPNSETRNNVQEKLEQFNL-FPDFNNYLI-YILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSE 94 (885)
T ss_pred HHHHhccCCChHHHHHHHHHHHHHhc-ccchhceee-EEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHH
Confidence 34455678999999999888887754 777421111 123456677777777763333 223346888899999
Q ss_pred HHhhhCCCChHHHHHHHHHHHHhhhhcc-ccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHH
Q 006763 86 LQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLS 164 (632)
Q Consensus 86 v~~~L~d~~pyVRK~A~~al~kl~~~~p-~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~ 164 (632)
+.+++.|.+|.||-+.=+-+..++.... +.- +++++.|.++|...|....-.|+.||..|++.++.
T Consensus 95 ~l~~lgd~~~lIr~tvGivITTI~s~~~~~~w--pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~----------- 161 (885)
T KOG2023|consen 95 CLHGLGDASPLIRATVGIVITTIASTGGLQHW--PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQ----------- 161 (885)
T ss_pred HHhhccCchHHHHhhhhheeeeeecccccccc--hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHH-----------
Confidence 9999999999999887665555543321 111 23568888999988888888899999999887642
Q ss_pred HHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhccc
Q 006763 165 KLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAP 244 (632)
Q Consensus 165 ~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~ 244 (632)
.+. ++|. . +-..-++.++..+.+|.++-+.-.|+.++-.+.. +.+..+.- -+.+...
T Consensus 162 -~ld-----s~~~--------~-------rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~-~~~qal~~-~iD~Fle 218 (885)
T KOG2023|consen 162 -FLD-----SDVL--------T-------RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII-IQTQALYV-HIDKFLE 218 (885)
T ss_pred -HHh-----hhcc--------c-------CchHHhHHHHHHHHhCCChhHHHHHHhhhhheee-cCcHHHHH-HHHHHHH
Confidence 111 1222 0 1123456677778899999888888888776532 22332221 1223333
Q ss_pred chhhhcc-CchhHHHHHHHHHHHHHhhCccchhcccc-e----eEeccCCchhHHHHHHHHHHHhcCcccHHHHHHH---
Q 006763 245 PLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIK-V----FFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLE--- 315 (632)
Q Consensus 245 ~L~~Lls-~~~niryvaL~~l~~i~~~~p~~~~~~~~-~----f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~E--- 315 (632)
.+..|-+ .+||+|--+-+.+..+...+|+-+.+|+. + +..-.+.|..|..+|-|....+|...-.+.++..
T Consensus 219 ~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~ 298 (885)
T KOG2023|consen 219 ILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLD 298 (885)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHH
Confidence 3333444 47999999999999999999999999875 2 1233455678999999999999987644443322
Q ss_pred -----HHH---hhhh-------cC----------------------------------------------HHHHHHHHHH
Q 006763 316 -----FKE---YATE-------VD----------------------------------------------VDFVRKAVRA 334 (632)
Q Consensus 316 -----L~~---yl~~-------~d----------------------------------------------~~~~~~~i~a 334 (632)
|+. |..+ .+ =.+|+-+..+
T Consensus 299 kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAa 378 (885)
T KOG2023|consen 299 KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAA 378 (885)
T ss_pred HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHH
Confidence 221 2110 00 0155666777
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhhc----hhhHHHHHHHHHHHHhh-----CcccHHHHHHHHHHhhccCChhhHHHH
Q 006763 335 IGRCAIKLERAAERCISVLLELIKIKV----NYVVQEAIIVIKDIFRR-----YPNTYESIIATLCESLDTLDEPEAKAS 405 (632)
Q Consensus 335 Ig~la~k~~~~~~~~v~~Ll~ll~~~~----~~v~~e~i~~l~~ilr~-----~p~~~~~ii~~L~~~l~~i~~p~a~~~ 405 (632)
+..+|.-|+ +.++++++.+++..- ..+.+..+-++.-|... +|.+- .+++.|...+++ +.|-++..
T Consensus 379 LDVLanvf~---~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~L~D-KkplVRsI 453 (885)
T KOG2023|consen 379 LDVLANVFG---DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSLLDD-KKPLVRSI 453 (885)
T ss_pred HHHHHHhhH---HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHHhcc-Cccceeee
Confidence 888887665 467777777776532 23444445566666543 23322 467777777766 45678899
Q ss_pred HHHHHhcccCccCC--H----HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 006763 406 MIWIIGEYAERIDN--A----DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVL 466 (632)
Q Consensus 406 ~iWiLGEy~~~i~~--~----~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll 466 (632)
.+|.++.|+..+-. . ..+++.++.+..+.+..||.+.-+|.+-+--...++ .-+-+.++|
T Consensus 454 TCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL 519 (885)
T KOG2023|consen 454 TCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYIL 519 (885)
T ss_pred eeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHHH
Confidence 99999999987632 2 346667777778888999998888888774433333 333444443
No 28
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.66 E-value=4.2e-06 Score=93.94 Aligned_cols=310 Identities=15% Similarity=0.184 Sum_probs=203.3
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHH-----HHHHhhcCCCChHHHhHHHHHhcCCC-chhhHHHH-
Q 006763 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAV-----NTFVKDSQDPNPLIRALAVRTMGCIR-VDKITEYL- 82 (632)
Q Consensus 10 lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~i-----Ntl~kDl~~~np~ir~lALr~L~~I~-~~ei~~~l- 82 (632)
+...+...+.+++..+|+++--.+.++++.+....-++. ..+..-+.+++..+...|.++|..+. .+...+.+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~ 157 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLF 157 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHh
Confidence 344555678899999999988888888876655333332 33566778999999999999999985 34444555
Q ss_pred ----HHHHHhhhCCCChHHHHHHHHHHHHhhhhcccccc---ccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCc
Q 006763 83 ----CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE---DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (632)
Q Consensus 83 ----~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~---~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~ 155 (632)
...+.+++..++..||-++..++.++...+++..+ +.|+++.+.+.|++.|..|..||+-.+.+++....+..
T Consensus 158 ~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~ 237 (503)
T PF10508_consen 158 DSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQ 237 (503)
T ss_pred CcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHH
Confidence 78888888888999999999999999999887644 45788999999999999999999999999988443211
Q ss_pred hhccHHHHHHHHHHhhc--cCh-hhHHHH---HHHHhccccCCHHH----HHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006763 156 FEITSHTLSKLLTALNE--CTE-WGQVFI---LDALSRYKAADARE----AENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (632)
Q Consensus 156 ~~l~~~~~~~Ll~~l~~--~~e-w~qi~l---L~lL~~y~~~~~~~----~~~il~~v~~~L~~~n~aVv~eaik~i~~~ 225 (632)
+-.....+.+|++.+.+ .+| +.-+.+ ++++......++.. ...+++.+...+.+.++.....|+-++..+
T Consensus 238 yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~i 317 (503)
T PF10508_consen 238 YLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQI 317 (503)
T ss_pred HHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 11223456777777653 355 544443 33333332222222 245667777777788876666666666544
Q ss_pred hhccCChHHHHHH-------HHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCcc-----c---hhccc--------c-
Q 006763 226 MELITSTDVVRNL-------CKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPT-----I---LAHEI--------K- 280 (632)
Q Consensus 226 ~~~i~~~~~~~~~-------~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~-----~---~~~~~--------~- 280 (632)
.- +.+..+.+ ++.+...+.... +...++|--+|+++..|....+. + ....+ .
T Consensus 318 gs---t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~ 394 (503)
T PF10508_consen 318 GS---TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSN 394 (503)
T ss_pred hC---CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHH
Confidence 21 23322222 111122222222 35679999999999999654432 1 11111 1
Q ss_pred eeEeccCCc-hhHHHHHHHHHHHhcCcccHHHHH---HHHHHhhhh
Q 006763 281 VFFCKYNDP-IYVKMEKLEIMIKLASDRNIDQVL---LEFKEYATE 322 (632)
Q Consensus 281 ~f~~l~~dd-~~Ik~~kL~lL~~L~n~~Ni~~Iv---~EL~~yl~~ 322 (632)
.+.-....| +.+|.-++.+|..++...-...-+ .++.+|+.+
T Consensus 395 ~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 395 LLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 222233556 889999999999999876443332 256678754
No 29
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=5.9e-05 Score=84.51 Aligned_cols=279 Identities=15% Similarity=0.170 Sum_probs=185.3
Q ss_pred cCCCChHHHhHHHHHhcC-CCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCC
Q 006763 55 SQDPNPLIRALAVRTMGC-IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNN 133 (632)
Q Consensus 55 l~~~np~ir~lALr~L~~-I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d 133 (632)
|++++.--+.-|++.+-. |..-+=+..+.|+|.|....+++-|||-..+-+.+.....|++.-- =++.+++-|.|+|
T Consensus 44 LdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--SIntfQk~L~DpN 121 (968)
T KOG1060|consen 44 LDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--SINTFQKALKDPN 121 (968)
T ss_pred HhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--eHHHHHhhhcCCc
Confidence 455566666667655443 3333347788999999999999999999999999999999987541 2588999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCchhccHHHHH-HHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCH
Q 006763 134 PMVVANAVAALAEIEENSSRPIFEITSHTLS-KLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANC 212 (632)
Q Consensus 134 ~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~-~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~ 212 (632)
+.+.+.|+.+|..|.- ..+.+++. .+=+...|++++-.-..-..+.++-.-++++...+.+.+..+|...++
T Consensus 122 ~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~sp 194 (968)
T KOG1060|consen 122 QLIRASALRVLSSIRV-------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSP 194 (968)
T ss_pred HHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCC
Confidence 9999999999998842 22222322 222334577888765554555444444555555778888889999999
Q ss_pred HHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccC-chhHHHHHHHHHHHHHhhC---ccc--------------
Q 006763 213 AVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-EPEIQYVALRNINLIVQRR---PTI-------------- 274 (632)
Q Consensus 213 aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls~-~~niryvaL~~l~~i~~~~---p~~-------------- 274 (632)
-|+=.|+-+|-.+.+. .-+++..-+++ |++++-. +.==|.+.+..|.+.+... |..
T Consensus 195 lVvgsAv~AF~evCPe--rldLIHknyrk----lC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~ 268 (968)
T KOG1060|consen 195 LVVGSAVMAFEEVCPE--RLDLIHKNYRK----LCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNL 268 (968)
T ss_pred cchhHHHHHHHHhchh--HHHHhhHHHHH----HHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccc
Confidence 9988888887665331 22333322223 4455532 3334566667776665432 311
Q ss_pred ------------hhccccee----E-eccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q 006763 275 ------------LAHEIKVF----F-CKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGR 337 (632)
Q Consensus 275 ------------~~~~~~~f----~-~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~ 337 (632)
..+..+.| . |+++...++-+-.-.+.+.|+-.+-+..|++-|..-+++ +.+.+.-..+.|..
T Consensus 269 ~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~ 347 (968)
T KOG1060|consen 269 KDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRS-NREVQYVVLQNIAT 347 (968)
T ss_pred cccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhc-CCcchhhhHHHHHH
Confidence 01111111 1 355666778888888999999887788888888886665 44566677788888
Q ss_pred HHHhhhhhHHHH
Q 006763 338 CAIKLERAAERC 349 (632)
Q Consensus 338 la~k~~~~~~~~ 349 (632)
++.+-+.-++-+
T Consensus 348 ~s~~~~~lF~P~ 359 (968)
T KOG1060|consen 348 ISIKRPTLFEPH 359 (968)
T ss_pred HHhcchhhhhhh
Confidence 888765544333
No 30
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=8.9e-05 Score=82.44 Aligned_cols=306 Identities=14% Similarity=0.132 Sum_probs=208.1
Q ss_pred CCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCC--CchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccc
Q 006763 39 SQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI--RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV 116 (632)
Q Consensus 39 ~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I--~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v 116 (632)
..||++.-..|-+..=|+|+-|++|--|+-.|-++ .-||-+...+|-++.-|.|++|-|-..|+-.++-+.+++|.-.
T Consensus 137 vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 137 VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 45788888888888888999999999999999886 5689999999999999999999999999999999999999876
Q ss_pred cccchHHHHHHHhcC-CChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhcc-------
Q 006763 117 EDRGFLESLKDLISD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRY------- 188 (632)
Q Consensus 117 ~~~~~~~~L~~lL~D-~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y------- 188 (632)
- .+.+.+.++|.+ +|-=|+.-.+.+|..+.+-.|.-.. +.+..|++.+.....- ..+-+++...
T Consensus 217 L--~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK----KLieplt~li~sT~Am--SLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 217 L--QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK----KLIEPITELMESTVAM--SLLYECVNTVVAVSMSS 288 (877)
T ss_pred c--cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh----hhhhHHHHHHHhhHHH--HHHHHHHHHheeehhcc
Confidence 5 378899998874 3444555555566555544432111 2223333333221111 1111222211
Q ss_pred -ccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHH
Q 006763 189 -KAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINL 266 (632)
Q Consensus 189 -~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~ 266 (632)
.+++...+...++.+-.++..++....|=+..++.++++ .+|..++. -...++++|+ .|+.||.-||+.+.-
T Consensus 289 g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~Vqa----~kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 289 GMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKAVQA----HKDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred CCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHHHHH----hHHHHHHHhccCCchhHHHHHHHHHH
Confidence 123445556667777778888888888888877777765 26665543 2333456775 799999999999999
Q ss_pred HHhhCc--cchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHH------HHHhhhhcCHHHHHHHHHHHHHH
Q 006763 267 IVQRRP--TILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLE------FKEYATEVDVDFVRKAVRAIGRC 338 (632)
Q Consensus 267 i~~~~p--~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~E------L~~yl~~~d~~~~~~~i~aIg~l 338 (632)
|+.+.. ++++.-+.++ ...++...|.+-+.-+..+|..+|...|.+. |.+.++-.-.+.-..+..-|-.+
T Consensus 363 mVskkNl~eIVk~LM~~~--~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv 440 (877)
T KOG1059|consen 363 MVSKKNLMEIVKTLMKHV--EKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDV 440 (877)
T ss_pred HhhhhhHHHHHHHHHHHH--HhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 987642 3444333332 2355667899999999999999998877552 22222212223334555667778
Q ss_pred HHhhhhhHHHHHHHHHHHHhhh
Q 006763 339 AIKLERAAERCISVLLELIKIK 360 (632)
Q Consensus 339 a~k~~~~~~~~v~~Ll~ll~~~ 360 (632)
+.|.+..-...|+.+..++.+.
T Consensus 441 ~iRV~~iR~fsV~~m~~Ll~~~ 462 (877)
T KOG1059|consen 441 AIRVPSIRPFSVSQMSALLDDP 462 (877)
T ss_pred heechhhhHhHHHHHHHHHhch
Confidence 8888887788888888888743
No 31
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=98.40 E-value=0.00021 Score=77.39 Aligned_cols=127 Identities=24% Similarity=0.345 Sum_probs=78.5
Q ss_pred HHHHHHhhCcccHHHHHHHHHHhhccCC----hhhHHHHHHHHHhcccCccCCH---HHHHHHHhhh-------------
Q 006763 371 VIKDIFRRYPNTYESIIATLCESLDTLD----EPEAKASMIWIIGEYAERIDNA---DELLESFLES------------- 430 (632)
Q Consensus 371 ~l~~ilr~~p~~~~~ii~~L~~~l~~i~----~p~a~~~~iWiLGEy~~~i~~~---~~~l~~l~~~------------- 430 (632)
.+-.+++++|.+-...-..+.+.+.... ..+....++|+||||+.-.-+. .++++.+.+.
T Consensus 291 ~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~llyE~~~~~~ 370 (459)
T PF14764_consen 291 QLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEALLYEVTQSRR 370 (459)
T ss_pred HHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHHHHHHHhhccc
Confidence 4555666777654333444444444332 2334577899999998765443 4444443321
Q ss_pred -----CCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh-h-----------hcCCCChHHHhhHHHHHHHhcCCH
Q 006763 431 -----FPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN-A-----------TVETDNPDLRDRAYIYWRLLSTDP 493 (632)
Q Consensus 431 -----f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~-~-----------~~~s~~~dvrdRA~~y~~LL~~~~ 493 (632)
....++.+-..++|+++||+.+.++ ..+-+.-.|.. . ..+..+..|..||.+++.||.. |
T Consensus 371 ~~~~~~~~~~~rl~~~lmt~laKLAsr~~d--l~pRv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LLk~-P 447 (459)
T PF14764_consen 371 DPSASRPSSQPRLMTVLMTALAKLASRSQD--LIPRVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLLKM-P 447 (459)
T ss_pred cccccCCCCchhHHHHHHHHHHHHHHhCHh--hhHHHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHhcC-c
Confidence 1134567778899999999999986 33333222222 1 2455688899999999999996 6
Q ss_pred HHHHhhh
Q 006763 494 EAAKDVV 500 (632)
Q Consensus 494 ~~~~~iv 500 (632)
..|.-|+
T Consensus 448 svA~~vL 454 (459)
T PF14764_consen 448 SVAQFVL 454 (459)
T ss_pred hHHHHhc
Confidence 6666443
No 32
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=6e-05 Score=84.08 Aligned_cols=271 Identities=15% Similarity=0.157 Sum_probs=192.0
Q ss_pred hccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhc
Q 006763 171 NECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL 250 (632)
Q Consensus 171 ~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll 250 (632)
.-++||..-..||+|.++. +++-.+.++..+..+|.|.++-|...|+-+++.++.. .. .|.
T Consensus 109 QHPNEyiRG~TLRFLckLk--E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~--~~---------------~L~ 169 (948)
T KOG1058|consen 109 QHPNEYIRGSTLRFLCKLK--EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN--FE---------------HLI 169 (948)
T ss_pred cCchHhhcchhhhhhhhcC--cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh--hh---------------hhc
Confidence 3489999999999999875 5666778888888999999999999998888765321 01 111
Q ss_pred cCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHH
Q 006763 251 SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRK 330 (632)
Q Consensus 251 s~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~ 330 (632)
-.-|++-+-. ...+-|.+.||.|.-.|+. ++++++-..+.+-..-+.+-++.+.--
T Consensus 170 pDapeLi~~f-----------------------L~~e~DpsCkRNAFi~L~~-~D~ErAl~Yl~~~idqi~~~~~~LqlV 225 (948)
T KOG1058|consen 170 PDAPELIESF-----------------------LLTEQDPSCKRNAFLMLFT-TDPERALNYLLSNIDQIPSFNDSLQLV 225 (948)
T ss_pred CChHHHHHHH-----------------------HHhccCchhHHHHHHHHHh-cCHHHHHHHHHhhHhhccCccHHHHHH
Confidence 1122222211 1234567788888877665 778777776666666677777888888
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHHhhccCChhhHHHHHHHHH
Q 006763 331 AVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWII 410 (632)
Q Consensus 331 ~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiL 410 (632)
+|..|.+.+.+-|.....++..++.+|....+.|..|+...+..+ ...|..-..+...+++.+.+..+..++..+.--|
T Consensus 226 iVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~l-S~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl 304 (948)
T KOG1058|consen 226 IVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTL-SNDPTALKAAASTYIDLLVKESDNNVKLIVLDRL 304 (948)
T ss_pred HHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEc-cCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHH
Confidence 889999888887877889999999999999999999987765544 3567777788888999888888888898888888
Q ss_pred hcccCccCC-HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHh
Q 006763 411 GEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (632)
Q Consensus 411 GEy~~~i~~-~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL 489 (632)
.+|...-.. -.+++-.++.-+...+-+|+.-.|.-+++|...+. ..++++.+=+... .+.|. =+|.+..|.++|
T Consensus 305 ~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN---vediv~~Lkke~~-kT~~~-e~d~~~~yRqlL 379 (948)
T KOG1058|consen 305 SELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN---VEDIVQFLKKEVM-KTHNE-ESDDNGKYRQLL 379 (948)
T ss_pred HHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc---HHHHHHHHHHHHH-hcccc-ccccchHHHHHH
Confidence 888733222 12333334444566778899999999999987665 4445544433322 23333 355666777766
Q ss_pred c
Q 006763 490 S 490 (632)
Q Consensus 490 ~ 490 (632)
-
T Consensus 380 i 380 (948)
T KOG1058|consen 380 I 380 (948)
T ss_pred H
Confidence 4
No 33
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.30 E-value=0.00076 Score=75.34 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=76.2
Q ss_pred HHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCC-ChHHHHHHHHHHHHhhhhccc-cccc-cchHH
Q 006763 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAE-LVED-RGFLE 123 (632)
Q Consensus 47 ~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~-~pyVRK~A~~al~kl~~~~p~-~v~~-~~~~~ 123 (632)
.+.+++-|+.+.+|+||--.-|+.+-+.+.-=++.+.|.++....++ ++--|.+.+-|+-++..+..- .++. ..+++
T Consensus 477 mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ 556 (1172)
T KOG0213|consen 477 MISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVK 556 (1172)
T ss_pred HHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHH
Confidence 46789999999999999888887776655555567777788888885 999999999999998876432 2221 24778
Q ss_pred HHHHHhcCCChhHH---HHHHHHHHHHH
Q 006763 124 SLKDLISDNNPMVV---ANAVAALAEIE 148 (632)
Q Consensus 124 ~L~~lL~D~d~~Vv---~~Al~aL~eI~ 148 (632)
.+..+|.|.+.-|. ++|+++|.|..
T Consensus 557 ii~~gl~De~qkVR~itAlalsalaeaa 584 (1172)
T KOG0213|consen 557 IIEHGLKDEQQKVRTITALALSALAEAA 584 (1172)
T ss_pred HHHHhhcccchhhhhHHHHHHHHHHHhc
Confidence 88999999887664 45566665543
No 34
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=9.8e-05 Score=80.92 Aligned_cols=297 Identities=18% Similarity=0.180 Sum_probs=196.0
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhcC--CCCcHHHHH----HHHHHhhcC-CCChHHHhHHHHHhcCCCc--hh----
Q 006763 11 FTDVVNCMQTENLELKKLVYLYLINYAK--SQPDLAILA----VNTFVKDSQ-DPNPLIRALAVRTMGCIRV--DK---- 77 (632)
Q Consensus 11 f~~vi~l~~s~d~~~Krl~YLyl~~~~~--~~~el~lL~----iNtl~kDl~-~~np~ir~lALr~L~~I~~--~e---- 77 (632)
+..++..+-|++...+.-+-..+..+.. .+|.+.-.. +..|.+-+. +.+|.++-.|-.+|.+|.. .+
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 5666677778887774444444443332 345543333 344556664 5668777666666666543 22
Q ss_pred hHH-HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccc---cccccchHHHHHHHhcCCCh-hHHHHHHHHHHHHHhcC-
Q 006763 78 ITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP-MVVANAVAALAEIEENS- 151 (632)
Q Consensus 78 i~~-~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~---~v~~~~~~~~L~~lL~D~d~-~Vv~~Al~aL~eI~~~~- 151 (632)
+++ -.+|...+++.+++..||.-|+.|+..+....|+ .+-+.+.++.|-.++...++ ..+.++.-+|..+|...
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 222 2346679999999999999999999999887664 45555777888888876665 67778888999988765
Q ss_pred CCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHH-----HHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 006763 152 SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMILQQM 226 (632)
Q Consensus 152 ~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~-----~il~~v~~~L~~~n~aVv~eaik~i~~~~ 226 (632)
|.+-++...+.+.-|...+...++-...-..-.++.+.....+..+ .++.++..+|.|.+..|+.-|+|++.++.
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 6666777677777777777767776654444445444433333333 24567888999999999999999998763
Q ss_pred hccCChHHHHHHH-Hhcccchhhhcc-Cc-hhHHHHHHHHHHHHHhhCccchhc----c-cc-eeEeccCCchhHHHHHH
Q 006763 227 ELITSTDVVRNLC-KKMAPPLVTLLS-AE-PEIQYVALRNINLIVQRRPTILAH----E-IK-VFFCKYNDPIYVKMEKL 297 (632)
Q Consensus 227 ~~i~~~~~~~~~~-~~~~~~L~~Lls-~~-~niryvaL~~l~~i~~~~p~~~~~----~-~~-~f~~l~~dd~~Ik~~kL 297 (632)
. .++...+.++ ..+.+.|..+++ ++ ..+|--|...|+.|..-+++-++. . +. .+.++...+..+|++|.
T Consensus 308 t--G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 308 T--GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred e--ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence 2 2333332221 123344556665 33 348888999999988766543322 1 11 24567777899999999
Q ss_pred HHHHHhcCcccH
Q 006763 298 EIMIKLASDRNI 309 (632)
Q Consensus 298 ~lL~~L~n~~Ni 309 (632)
=.+..++...+-
T Consensus 386 waIsN~ts~g~~ 397 (514)
T KOG0166|consen 386 WAISNLTSSGTP 397 (514)
T ss_pred HHHHhhcccCCH
Confidence 999999888773
No 35
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.00061 Score=76.93 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=120.2
Q ss_pred HhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHH
Q 006763 87 QRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKL 166 (632)
Q Consensus 87 ~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~L 166 (632)
.|++.+.+-.-+|...+|+.-+..-+.|+.- -+.+.|++=|+.+|.-|++-|+++|..|+... ..+..+...
T Consensus 76 lKLias~~f~dKRiGYLaamLlLdE~qdvll--LltNslknDL~s~nq~vVglAL~alg~i~s~E------mardlapeV 147 (866)
T KOG1062|consen 76 LKLIASDNFLDKRIGYLAAMLLLDERQDLLL--LLTNSLKNDLNSSNQYVVGLALCALGNICSPE------MARDLAPEV 147 (866)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccchHHHH--HHHHHHHhhccCCCeeehHHHHHHhhccCCHH------HhHHhhHHH
Confidence 5666677777788888888877766666553 14467777778888899999999999886422 222223333
Q ss_pred HHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccch
Q 006763 167 LTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPL 246 (632)
Q Consensus 167 l~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L 246 (632)
-+.++..+|+..-+..-++.++....++..+.++.....+|...+.+|+..++..+..+.. + +++.+.. ++++.+.|
T Consensus 148 e~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~-~-~~~~l~~-fr~l~~~l 224 (866)
T KOG1062|consen 148 ERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCK-I-SPDALSY-FRDLVPSL 224 (866)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHh-c-CHHHHHH-HHHHHHHH
Confidence 3334458899888888888888777888888888888899999999999999998887643 1 3443332 22333333
Q ss_pred hhhc----c------------CchhHHHHHHHHHHHHHhhCcc
Q 006763 247 VTLL----S------------AEPEIQYVALRNINLIVQRRPT 273 (632)
Q Consensus 247 ~~Ll----s------------~~~niryvaL~~l~~i~~~~p~ 273 (632)
++.| + ++|=+|.-.|+.|..+.+.+++
T Consensus 225 V~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d 267 (866)
T KOG1062|consen 225 VKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD 267 (866)
T ss_pred HHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc
Confidence 3322 1 2456777888888877776553
No 36
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.19 E-value=0.0044 Score=74.41 Aligned_cols=454 Identities=15% Similarity=0.189 Sum_probs=253.2
Q ss_pred cchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCc--hhhH--HHHHHHHHhhhCCCChHHH
Q 006763 23 LELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV--DKIT--EYLCDPLQRCLKDDDPYVR 98 (632)
Q Consensus 23 ~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~--~ei~--~~l~~~v~~~L~d~~pyVR 98 (632)
...-++.|.|+..-..-..- .=-..+.+..-+..+-+-+|.-|||+++.|.. |.+. +.+...|..-+.|++.-||
T Consensus 794 ~~~a~li~~~la~~r~f~~s-fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVR 872 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQS-FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVR 872 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHh-hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHH
Confidence 44445566655432211110 11123445555667778899999999998853 2222 3556668888899999999
Q ss_pred HHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhc------
Q 006763 99 KTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNE------ 172 (632)
Q Consensus 99 K~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~------ 172 (632)
-+|+--+.|+..-+|+.+. ++.+.+..-+.|...+|.=.++..+.+||...|. |...+..+.+++.++.|
T Consensus 873 EAaldLvGrfvl~~~e~~~--qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd--f~~i~~~cakmlrRv~DEEg~I~ 948 (1692)
T KOG1020|consen 873 EAALDLVGRFVLSIPELIF--QYYDQIIERILDTGVSVRKRVIKILRDICEETPD--FSKIVDMCAKMLRRVNDEEGNIK 948 (1692)
T ss_pred HHHHHHHhhhhhccHHHHH--HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC--hhhHHHHHHHHHHHhccchhHHH
Confidence 9999999999999999887 4888888888899999999999999999987764 55555556666655432
Q ss_pred -----------------------------------------cChhhHHHHHHHHhccccCC---------HHHHHHHHHH
Q 006763 173 -----------------------------------------CTEWGQVFILDALSRYKAAD---------AREAENIVER 202 (632)
Q Consensus 173 -----------------------------------------~~ew~qi~lL~lL~~y~~~~---------~~~~~~il~~ 202 (632)
.+.|.+-.+..+|..+.-.. .......++.
T Consensus 949 kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L 1028 (1692)
T KOG1020|consen 949 KLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNL 1028 (1692)
T ss_pred HHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHH
Confidence 24465555555554433100 0011122333
Q ss_pred HHHhh-------------cCCCHHHHHHHHHHHHHhhhccCChHHHH-HHHHhcccchhhhc-cC--chhHHHHHHHHHH
Q 006763 203 VTPRL-------------QHANCAVVLSAVKMILQQMELITSTDVVR-NLCKKMAPPLVTLL-SA--EPEIQYVALRNIN 265 (632)
Q Consensus 203 v~~~L-------------~~~n~aVv~eaik~i~~~~~~i~~~~~~~-~~~~~~~~~L~~Ll-s~--~~niryvaL~~l~ 265 (632)
+..++ ...+..-+++++.++..+.. + .|.++. ..+. +..|.++.- ++ +.-+-|.++..+.
T Consensus 1029 ~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~Fsk-i-rP~Llt~khv~-tL~PYL~s~~~t~~~~~fl~~vi~Ile 1105 (1692)
T KOG1020|consen 1029 LTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSK-I-RPQLLTKKHVI-TLQPYLTSKASTIEEAQFLYYVIQILE 1105 (1692)
T ss_pred HHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHh-c-CchhccHHHHH-HhhhHHhccccchHHHHHHHHHHHHHH
Confidence 33222 23455677777777765532 1 343322 1111 122332222 22 2233344444444
Q ss_pred HHHh---hCccchhc----ccceeEeccCCchhHHHHHHHHHHHhcCc--ccHHHHHHHHH------Hhhhhc---C---
Q 006763 266 LIVQ---RRPTILAH----EIKVFFCKYNDPIYVKMEKLEIMIKLASD--RNIDQVLLEFK------EYATEV---D--- 324 (632)
Q Consensus 266 ~i~~---~~p~~~~~----~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~--~Ni~~Iv~EL~------~yl~~~---d--- 324 (632)
..+. .-++.|-. ++.....+ -....-..+.-.+..+++. +|++.+-.-+. ++++.. +
T Consensus 1106 ~VlPlv~~~sesfL~sLEe~L~~~i~k--~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~ 1183 (1692)
T KOG1020|consen 1106 CVLPLVANPSESFLASLEEDLLKRIVK--MGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADI 1183 (1692)
T ss_pred HHhhhhccchHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccch
Confidence 4332 22233322 21111111 1123344667778888885 77665543333 333322 1
Q ss_pred --HHHHHHHHHHHHHHHHhhh----------------hhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccH--H
Q 006763 325 --VDFVRKAVRAIGRCAIKLE----------------RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY--E 384 (632)
Q Consensus 325 --~~~~~~~i~aIg~la~k~~----------------~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~--~ 384 (632)
......++..+|-++..|. ...+.|+..|+-+.+.....+...++..+..++-++|... +
T Consensus 1184 ~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~ 1263 (1692)
T KOG1020|consen 1184 VNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSR 1263 (1692)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhH
Confidence 1234567788888887541 1235566677777777777788888888988888888752 3
Q ss_pred HHHHHHHHhhccCChhhH-HHH---HHHHH------------------------hcccCccCC----------HHHHHHH
Q 006763 385 SIIATLCESLDTLDEPEA-KAS---MIWII------------------------GEYAERIDN----------ADELLES 426 (632)
Q Consensus 385 ~ii~~L~~~l~~i~~p~a-~~~---~iWiL------------------------GEy~~~i~~----------~~~~l~~ 426 (632)
.+...+.+.|.+.+.+.. +-. ..|+. +|....-.. ..-+++.
T Consensus 1264 ~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ 1343 (1692)
T KOG1020|consen 1264 EVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDN 1343 (1692)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHH
Confidence 444555555554443333 211 12221 111111100 1234555
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHh
Q 006763 427 FLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (632)
Q Consensus 427 l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL 489 (632)
+++.|.+-+..+|++.+. ++|+.++..=-.-...+.+++.+ ..+...+.|.||.+...=+
T Consensus 1344 ILe~cl~~d~~~r~~aik-vl~liL~QGLVhP~~cvPtLIAL--~Tdp~~~~r~~Ad~LL~ei 1403 (1692)
T KOG1020|consen 1344 ILESCLDRDLQVRLVAIK-VLKLILNQGLVHPVHCVPTLIAL--ETDPSQAIRHVADELLKEI 1403 (1692)
T ss_pred HHHHHhccchHHHHHHHH-HHHHHHHccCCCccchhhhheee--cCChHHHHHHHHHHHHHHH
Confidence 666777778888887663 44554443210012366777765 3457788999998766533
No 37
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.13 E-value=1.3e-05 Score=67.48 Aligned_cols=84 Identities=30% Similarity=0.468 Sum_probs=67.1
Q ss_pred HHHHhhc-CCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHH
Q 006763 49 NTFVKDS-QDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (632)
Q Consensus 49 Ntl~kDl-~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~ 127 (632)
..|.+-+ +|+|+.+|..|+++|+.++.++.++ .+.+.+.|+++.||..|+.++.++- ++ ..++.|.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~----~L~~~l~d~~~~vr~~a~~aL~~i~--~~------~~~~~L~~ 69 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEAIP----ALIELLKDEDPMVRRAAARALGRIG--DP------EAIPALIK 69 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHH----HHHHHHTSSSHHHHHHHHHHHHCCH--HH------HTHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHH----HHHHHHcCCCHHHHHHHHHHHHHhC--CH------HHHHHHHH
Confidence 4567777 8999999999999999999886655 4677779999999999999999873 22 35678888
Q ss_pred HhcC-CChhHHHHHHHHH
Q 006763 128 LISD-NNPMVVANAVAAL 144 (632)
Q Consensus 128 lL~D-~d~~Vv~~Al~aL 144 (632)
++.| .+..|..+|+.+|
T Consensus 70 ~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHTC-SSHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhc
Confidence 7765 5666777777765
No 38
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.08 E-value=0.025 Score=65.33 Aligned_cols=324 Identities=14% Similarity=0.151 Sum_probs=182.7
Q ss_pred cCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccc-
Q 006763 37 AKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL- 115 (632)
Q Consensus 37 ~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~- 115 (632)
-..+-|.-.|++|-+.++|+... -.-..+--..++..+.++|.|.++-|..-|+-|++-+..+-|+.
T Consensus 15 tssDKDfRfMAtsDLm~eLqkds------------i~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~ 82 (1233)
T KOG1824|consen 15 TSSDKDFRFMATSDLMTELQKDS------------IKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQ 82 (1233)
T ss_pred cCCCcchhhhhHHHHHHHHHhhh------------hhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHH
Confidence 34567788999999998888551 11223555677888999999999999999999999888766643
Q ss_pred ccccchHHHH-HHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHh----hccChh--hHHHHHHHHhcc
Q 006763 116 VEDRGFLESL-KDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL----NECTEW--GQVFILDALSRY 188 (632)
Q Consensus 116 v~~~~~~~~L-~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l----~~~~ew--~qi~lL~lL~~y 188 (632)
++ ..++.| ..++.+++..-=.+++.+..-|.+-.|...-.+....+.+++..+ ..+.++ .++..++++..|
T Consensus 83 le--~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ 160 (1233)
T KOG1824|consen 83 LE--TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADV 160 (1233)
T ss_pred HH--HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence 22 233333 335655554444456666655554433111122333444444444 444554 477778877654
Q ss_pred cc----CCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhcc--CchhHHHHHHH
Q 006763 189 KA----ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS--AEPEIQYVALR 262 (632)
Q Consensus 189 ~~----~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls--~~~niryvaL~ 262 (632)
-. --+..-..++..+.+.|++.-.+|.-.|+-++.++.-+.+ ...... ++.-|.+=|+ ..+..--.-++
T Consensus 161 lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~-~~ly~~----li~~Ll~~L~~~~q~~~~rt~Iq 235 (1233)
T KOG1824|consen 161 LSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN-RDLYVE----LIEHLLKGLSNRTQMSATRTYIQ 235 (1233)
T ss_pred HHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC-HHHHHH----HHHHHHhccCCCCchHHHHHHHH
Confidence 31 1112234577777888898889999999999988754332 222222 2222222222 22322233445
Q ss_pred HHHHHHhhCccchhcccce------eEe--ccCCchhHHHHHHHHHHHh--cCcccHH----HHHHHHHHhhhhc-----
Q 006763 263 NINLIVQRRPTILAHEIKV------FFC--KYNDPIYVKMEKLEIMIKL--ASDRNID----QVLLEFKEYATEV----- 323 (632)
Q Consensus 263 ~l~~i~~~~p~~~~~~~~~------f~~--l~~dd~~Ik~~kL~lL~~L--~n~~Ni~----~Iv~EL~~yl~~~----- 323 (632)
+|..|+.....=|..|... =|| -..||..+|..-|+.+-.. -.+.|+. +|++-+++|+...
T Consensus 236 ~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 236 CLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCC
Confidence 5566655443334444321 134 1344555666555554332 3555654 4444445565421
Q ss_pred ---------------CHH--------------HHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHhhhchhhHHHHHH
Q 006763 324 ---------------DVD--------------FVRKAVRAIGRCAIK----LERAAERCISVLLELIKIKVNYVVQEAII 370 (632)
Q Consensus 324 ---------------d~~--------------~~~~~i~aIg~la~k----~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~ 370 (632)
|++ +||++.+.|..+... .+......=..++.-++...+.|..++++
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~ 395 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFH 395 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHH
Confidence 111 567777777554432 23333333445556566666677778888
Q ss_pred HHHHHHhhC
Q 006763 371 VIKDIFRRY 379 (632)
Q Consensus 371 ~l~~ilr~~ 379 (632)
+...++++-
T Consensus 396 ~yi~ll~qt 404 (1233)
T KOG1824|consen 396 AYIALLKQT 404 (1233)
T ss_pred HHHHHHHcC
Confidence 888877753
No 39
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.06 E-value=0.0078 Score=67.32 Aligned_cols=135 Identities=17% Similarity=0.217 Sum_probs=99.1
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC--chhhHHHHHHHHH
Q 006763 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQ 87 (632)
Q Consensus 10 lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~--~~ei~~~l~~~v~ 87 (632)
.|-.++..... +...|||+--++..|++.-|++.--++|++..=+.|.+..||--|+|.|..++ +++.+.-+..-+.
T Consensus 24 ~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~ 102 (556)
T PF05918_consen 24 DYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLV 102 (556)
T ss_dssp HHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHH
T ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHH
Confidence 46666666664 68999999999999999999999999999999999999999999999999997 5799999999999
Q ss_pred hhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHh--cCCChhHHHHHHHHHHHHHh
Q 006763 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI--SDNNPMVVANAVAALAEIEE 149 (632)
Q Consensus 88 ~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL--~D~d~~Vv~~Al~aL~eI~~ 149 (632)
++|...++-.+..+=.++..+++.+|... +...+..++ ...|..|.-.++..+.+-..
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~k~t----L~~lf~~i~~~~~~de~~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDPKGT----LTGLFSQIESSKSGDEQVRERALKFLREKLK 162 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHH---HS-HHHHHHHHHHHHHHGG
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCcHHH----HHHHHHHHHhcccCchHHHHHHHHHHHHHHh
Confidence 99999998888777778888888888654 223333333 13456677777777765443
No 40
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.00042 Score=75.39 Aligned_cols=336 Identities=12% Similarity=0.166 Sum_probs=207.8
Q ss_pred ChHHHhHHHHHhcCCCc-hhhHH-HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhH
Q 006763 59 NPLIRALAVRTMGCIRV-DKITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (632)
Q Consensus 59 np~ir~lALr~L~~I~~-~ei~~-~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~V 136 (632)
||.-+=-||-.|..++- ..|+. -++......+.-++..-.---+-++..+...+|+... ++.+.|...|+|+--+|
T Consensus 203 ~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~--q~rpfL~~wls~k~emV 280 (898)
T COG5240 203 NPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALL--QLRPFLNSWLSDKFEMV 280 (898)
T ss_pred ChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHH--HHHHHHHHHhcCcchhh
Confidence 56666677777777743 34433 1122222222112211111112233444556777665 47788888888888899
Q ss_pred HHHHHHHHHHHHhcC-CCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHH
Q 006763 137 VANAVAALAEIEENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVV 215 (632)
Q Consensus 137 v~~Al~aL~eI~~~~-~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv 215 (632)
..-+..+++.+...+ +.+.++-....++.+|+.-+....|..+.+|.=|+.-.|+--.. .-.-+..+..+.|..+.
T Consensus 281 ~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v---cN~evEsLIsd~Nr~Is 357 (898)
T COG5240 281 FLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV---CNKEVESLISDENRTIS 357 (898)
T ss_pred hHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee---cChhHHHHhhcccccch
Confidence 888888888877666 44444444445555555444456667666666666544431100 01122345667788888
Q ss_pred HHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccC-chhHHHHHHHHHHHHHhhCccchhccccee-Eec-cCCchhH
Q 006763 216 LSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-EPEIQYVALRNINLIVQRRPTILAHEIKVF-FCK-YNDPIYV 292 (632)
Q Consensus 216 ~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls~-~~niryvaL~~l~~i~~~~p~~~~~~~~~f-~~l-~~dd~~I 292 (632)
.-|+.++++- ...+.+.. +.+.+.++++. +.+.+.++++.+..++..+|.--..++..+ ..+ ...-...
T Consensus 358 tyAITtLLKT----Gt~e~idr----Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eF 429 (898)
T COG5240 358 TYAITTLLKT----GTEETIDR----LVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEF 429 (898)
T ss_pred HHHHHHHHHc----CchhhHHH----HHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchH
Confidence 8888888863 34455543 34444566653 568889999999998888875433222211 112 2334678
Q ss_pred HHHHHHHHHHhcC--cccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhhchhhHHHH
Q 006763 293 KMEKLEIMIKLAS--DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER--AAERCISVLLELIKIKVNYVVQEA 368 (632)
Q Consensus 293 k~~kL~lL~~L~n--~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~--~~~~~v~~Ll~ll~~~~~~v~~e~ 368 (632)
|+-.+|.+..+.. ++.-+.++.+|.+|++++. |-.-+++-+|.++..-|. ....|+.-+.+-+-..+..|+..+
T Consensus 430 K~~~Vdaisd~~~~~p~skEraLe~LC~fIEDce--y~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaA 507 (898)
T COG5240 430 KKYMVDAISDAMENDPDSKERALEVLCTFIEDCE--YHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAA 507 (898)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcc--hhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHH
Confidence 9999999988763 4677899999999999764 556678888888887654 456888888888888888899888
Q ss_pred HHHHHHHHhh--CcccHHHHHHHHHHhhccCChhhHHHHHHHHH
Q 006763 369 IIVIKDIFRR--YPNTYESIIATLCESLDTLDEPEAKASMIWII 410 (632)
Q Consensus 369 i~~l~~ilr~--~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiL 410 (632)
+..+...--+ .+-.++.+...|-+++++- +.+++-.+.+.+
T Consensus 508 v~aLskf~ln~~d~~~~~sv~~~lkRclnD~-DdeVRdrAsf~l 550 (898)
T COG5240 508 VQALSKFALNISDVVSPQSVENALKRCLNDQ-DDEVRDRASFLL 550 (898)
T ss_pred HHHHHHhccCccccccHHHHHHHHHHHhhcc-cHHHHHHHHHHH
Confidence 8887654322 3445677777777777763 445554443333
No 41
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00045 Score=71.59 Aligned_cols=253 Identities=17% Similarity=0.159 Sum_probs=162.5
Q ss_pred HHHhhcCCCcchHHHHHHHHHHhcCCCCcHH----HHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHH------HHH
Q 006763 14 VVNCMQTENLELKKLVYLYLINYAKSQPDLA----ILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE------YLC 83 (632)
Q Consensus 14 vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~----lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~------~l~ 83 (632)
|.-++++.+..+..-+--++.+++-....-. ++-..-+...+..++-.+|+.|..++.++.+-+-.. --.
T Consensus 90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGAL 169 (550)
T ss_pred HHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccch
Confidence 3446778888888888888887775443311 111222555666777788999999988886543222 112
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHhhhhc---cccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCC--CCchhc
Q 006763 84 DPLQRCLKDDDPYVRKTAAICVAKLYDIN---AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS--RPIFEI 158 (632)
Q Consensus 84 ~~v~~~L~d~~pyVRK~A~~al~kl~~~~---p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~--~~~~~l 158 (632)
.++.++.+.++--||+.|.-++..|-... ..++. .+-++.|..++...|+.|..-+..++.-|.-... +..-+-
T Consensus 170 ~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~-aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqa 248 (550)
T KOG4224|consen 170 EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVH-AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQA 248 (550)
T ss_pred hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhc-cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhc
Confidence 45666888899999999998888775543 23444 4677999999999999999999999988864431 111122
Q ss_pred cHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHH-----HHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChH
Q 006763 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-----VERVTPRLQHANCAVVLSAVKMILQQMELITSTD 233 (632)
Q Consensus 159 ~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~i-----l~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~ 233 (632)
-++.++.|+..+.+.++-.|+..=-.|..+..++... ..+ +..+..+||+..--.+++.+-||-++.-+--+..
T Consensus 249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq-~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~ 327 (550)
T KOG4224|consen 249 EPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ-REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV 327 (550)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh-hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc
Confidence 2345777777778888888877655555555433221 112 3345567788766677777777743310001222
Q ss_pred HHHHHHHhcccchhhhcc-Cch-hHHHHHHHHHHHHHhh
Q 006763 234 VVRNLCKKMAPPLVTLLS-AEP-EIQYVALRNINLIVQR 270 (632)
Q Consensus 234 ~~~~~~~~~~~~L~~Lls-~~~-niryvaL~~l~~i~~~ 270 (632)
.+-. .-...||+++|. +++ ++|..+..++..+...
T Consensus 328 lI~d--agfl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 328 LIAD--AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred ceec--ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 2211 124567889885 555 4999999998888764
No 42
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.91 E-value=0.0015 Score=75.39 Aligned_cols=346 Identities=19% Similarity=0.264 Sum_probs=205.5
Q ss_pred CCChHHHhHHHHHhcCCCchh------hHHHHHHHHHhhhCCCChHHHHHHHHHHHHhh--hhccccccccchHHHHHHH
Q 006763 57 DPNPLIRALAVRTMGCIRVDK------ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLY--DINAELVEDRGFLESLKDL 128 (632)
Q Consensus 57 ~~np~ir~lALr~L~~I~~~e------i~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~--~~~p~~v~~~~~~~~L~~l 128 (632)
..+..+| .|++.|.++.... .-..+++.+.++|...+.-+.=.++.++-|+- .-+.+.+...+.++.|.++
T Consensus 261 kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 261 KQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Confidence 3455566 6677777775432 12255677888888888887777777776653 3445555556899999999
Q ss_pred hcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHH-HH---HHHHHHHH
Q 006763 129 ISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAR-EA---ENIVERVT 204 (632)
Q Consensus 129 L~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~-~~---~~il~~v~ 204 (632)
+...+..++-.++.+|+.++.+..-...-+..+.+.+|...+.+. .+. ...+.+|......+.. .. .+.+..+.
T Consensus 340 l~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~-~~~-~val~iLy~LS~dd~~r~~f~~TdcIp~L~ 417 (708)
T PF05804_consen 340 LPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP-NFR-EVALKILYNLSMDDEARSMFAYTDCIPQLM 417 (708)
T ss_pred hcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC-chH-HHHHHHHHHhccCHhhHHHHhhcchHHHHH
Confidence 998899999999999998875432100011112345666655543 333 3455666555443211 11 12344444
Q ss_pred Hh-hcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHH-hcccchhhh-cc-CchhHHHHHHHHHHHHHhhCcc---chhc
Q 006763 205 PR-LQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTL-LS-AEPEIQYVALRNINLIVQRRPT---ILAH 277 (632)
Q Consensus 205 ~~-L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~-~~~~~L~~L-ls-~~~niryvaL~~l~~i~~~~p~---~~~~ 277 (632)
.. +.+++..|-.+.+.+.+++.- ++...+.++. +-.+.|+.. ++ +++ +.++.|..|++..+. .|.+
T Consensus 418 ~~Ll~~~~~~v~~eliaL~iNLa~---~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~~ 490 (708)
T PF05804_consen 418 QMLLENSEEEVQLELIALLINLAL---NKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFVD 490 (708)
T ss_pred HHHHhCCCccccHHHHHHHHHHhc---CHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHHH
Confidence 43 455666777777777776532 3333333332 111222221 12 332 345666666665532 3444
Q ss_pred cccee--EeccCCchhHHHHHHHHHHHhcCc-ccHHHHHHH--HHHhhhh------cCHHHHHHHHHHHHHHHHhhhhhH
Q 006763 278 EIKVF--FCKYNDPIYVKMEKLEIMIKLASD-RNIDQVLLE--FKEYATE------VDVDFVRKAVRAIGRCAIKLERAA 346 (632)
Q Consensus 278 ~~~~f--~~l~~dd~~Ik~~kL~lL~~L~n~-~Ni~~Iv~E--L~~yl~~------~d~~~~~~~i~aIg~la~k~~~~~ 346 (632)
++..+ .+...++.....+.|-+|.+|..+ -++..++++ |..|+.+ .++++.-++|..+|.+|.. +..+
T Consensus 491 ~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~~A 569 (708)
T PF05804_consen 491 FIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PECA 569 (708)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HHHH
Confidence 44321 134456778888999999998744 478888875 5556543 4678888999999988742 3333
Q ss_pred H-----HHHHHHHHHHhhhc--hhhHHHHHHHHHHHHhhCcccHHHH------HHHHHHhhccCChhhHH---HHHHHHH
Q 006763 347 E-----RCISVLLELIKIKV--NYVVQEAIIVIKDIFRRYPNTYESI------IATLCESLDTLDEPEAK---ASMIWII 410 (632)
Q Consensus 347 ~-----~~v~~Ll~ll~~~~--~~v~~e~i~~l~~ilr~~p~~~~~i------i~~L~~~l~~i~~p~a~---~~~iWiL 410 (632)
. .+++.+++++..+. +.++-+++.++-+++++ ++.++.+ +..|++.+.+- .++++ -.++-|+
T Consensus 570 ~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~-N~~ir~~~d~~Ldii 647 (708)
T PF05804_consen 570 PLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDK-NAEIRKVCDNALDII 647 (708)
T ss_pred HHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 3 45889999998876 56666777788888765 5554443 34455555442 23443 3456777
Q ss_pred hcccC
Q 006763 411 GEYAE 415 (632)
Q Consensus 411 GEy~~ 415 (632)
+||..
T Consensus 648 ~e~d~ 652 (708)
T PF05804_consen 648 AEYDE 652 (708)
T ss_pred HHhCH
Confidence 77754
No 43
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.031 Score=63.36 Aligned_cols=494 Identities=16% Similarity=0.211 Sum_probs=269.3
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhh
Q 006763 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRC 89 (632)
Q Consensus 10 lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~ 89 (632)
+|.--+..|.|++-+++-.+-=|+++..++.=|+++-.--...+++. | .-...|..+ ++.++|-+.++
T Consensus 260 lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~-p--~~~~fa~~a---------~~~v~P~Ll~~ 327 (859)
T KOG1241|consen 260 LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP-P--SSKYFARQA---------LQDVVPVLLEL 327 (859)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-c--hhhHHHHHH---------HhHhhHHHHHH
Confidence 44445556667777777777777776666666665555555555554 2 111122222 23445555555
Q ss_pred hC-------CCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCC-CchhccHH
Q 006763 90 LK-------DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEITSH 161 (632)
Q Consensus 90 L~-------d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~-~~~~l~~~ 161 (632)
|. +.++.+-|.|-.|+.-+-+...+.+-+ ...+.+++-++..|--=.-+|+.++..|....+. ....+.+.
T Consensus 328 L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~q 406 (859)
T KOG1241|consen 328 LTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQ 406 (859)
T ss_pred HHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhh
Confidence 53 266778888888887776666555443 4667888878777777777788888777654332 23344455
Q ss_pred HHHHHHHHhhc-------cChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhcc-----
Q 006763 162 TLSKLLTALNE-------CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELI----- 229 (632)
Q Consensus 162 ~~~~Ll~~l~~-------~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i----- 229 (632)
.+..+++.+.| ..+|.--.|.+.+..-. .+......++..+...|+ ..|-|.-.+...+..+.+..
T Consensus 407 alp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~-~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~ 484 (859)
T KOG1241|consen 407 ALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAI-INQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAV 484 (859)
T ss_pred hhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhc-ccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhcc
Confidence 55666665544 46788778888776222 122222233333333342 35677777777777664221
Q ss_pred CC--hHHHHHHHHhcccchhhhc---c-CchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHh
Q 006763 230 TS--TDVVRNLCKKMAPPLVTLL---S-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKL 303 (632)
Q Consensus 230 ~~--~~~~~~~~~~~~~~L~~Ll---s-~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L 303 (632)
++ .+....++.-+++.|+.-. . +++|.|-.+.+.|..|+...|+...+ .+-...+-++.+|
T Consensus 485 s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~-------------~v~~~~l~il~kl 551 (859)
T KOG1241|consen 485 SNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP-------------MVQKLTLVILEKL 551 (859)
T ss_pred CCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH-------------HHHHHHHHHHHHH
Confidence 01 0001112223344343322 2 46899999999999999876654422 1222222233322
Q ss_pred cCcccHHHHHH-HHHHhhhh-cCHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHhhhch-hhHHHHHHHHHHHH
Q 006763 304 ASDRNIDQVLL-EFKEYATE-VDVDFVRKAVRAIGRCAIKLER----AAERCISVLLELIKIKVN-YVVQEAIIVIKDIF 376 (632)
Q Consensus 304 ~n~~Ni~~Iv~-EL~~yl~~-~d~~~~~~~i~aIg~la~k~~~----~~~~~v~~Ll~ll~~~~~-~v~~e~i~~l~~il 376 (632)
- +.+. +.+.|... .=.++...+...++.+..|+++ ..+..+..++.++..+.+ .+.+++.-.+.-+.
T Consensus 552 ~------q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~ 625 (859)
T KOG1241|consen 552 D------QTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLA 625 (859)
T ss_pred H------HHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHH
Confidence 1 1111 22222211 1123444555666666666554 455556666666776444 34555655554444
Q ss_pred hhCcccH----HHHHHHHHHhhccCChhhHHHHHHHHHhcccCccC-----CHHHHHHHHhhhCCCC--CHHHHHHHHHH
Q 006763 377 RRYPNTY----ESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-----NADELLESFLESFPEE--PAQVQLQLLTA 445 (632)
Q Consensus 377 r~~p~~~----~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~-----~~~~~l~~l~~~f~~e--~~~vq~~iLta 445 (632)
..-...+ ....+.|..-+...++..+..+++-++|.-+.-.. ...+++..+++.+..+ +-+||-+||++
T Consensus 626 ~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~ 705 (859)
T KOG1241|consen 626 ESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSV 705 (859)
T ss_pred HHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHH
Confidence 3322222 23344555555666777788888999998776543 2567888888887765 56899999999
Q ss_pred HHHHhhcCCCCChH---HHHHHHHHhhhcCCCCh----------HHHhhHHHHHH-Hhc---C--CHHHHHhhhccCCCC
Q 006763 446 TVKLFLKKPTEGPQ---QMIQVVLNNATVETDNP----------DLRDRAYIYWR-LLS---T--DPEAAKDVVLAEKPV 506 (632)
Q Consensus 446 ~~Kl~~~~p~e~~~---~~v~~ll~~~~~~s~~~----------dvrdRA~~y~~-LL~---~--~~~~~~~ivl~~~p~ 506 (632)
+.-++.....+ .+ +++..+|+.+..-..|+ +||.-+.+-|. ++. . ++.... .--|.
T Consensus 706 FgDIAlaIg~~-F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~----p~v~~ 780 (859)
T KOG1241|consen 706 FGDIALAIGAD-FEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQ----PYVPH 780 (859)
T ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhh----cchHH
Confidence 99998765442 33 34444555443101111 35555554333 221 1 111110 00011
Q ss_pred CC------CCCCcCCHHHHHHHHHhcCccccccccChhhhhc
Q 006763 507 IS------DDSNQLDPSLLDELLANIATLSSVYHKPPEAFVT 542 (632)
Q Consensus 507 ~~------~~~~~~~~~~l~~l~~~~~tls~vy~kp~~~~~~ 542 (632)
|- ......+..+....+.-||-|+..|++..-.|+-
T Consensus 781 I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~ 822 (859)
T KOG1241|consen 781 IISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFL 822 (859)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhc
Confidence 00 0122335566666777788888888877666543
No 44
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0028 Score=71.64 Aligned_cols=269 Identities=13% Similarity=0.184 Sum_probs=164.8
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHH
Q 006763 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI 199 (632)
Q Consensus 120 ~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~i 199 (632)
.+.+.+..+|..++-+|+.-|..++..+...++...-. ...+++-+|+..+.+--|.-+.+|.=++.-.|.-.. ..
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~---~c 320 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT---VC 320 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc---cc
Confidence 35667777777777777777666666554333221111 112233333322223333333333333322222110 00
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccC-chhHHHHHHHHHHHHHhhCccchhcc
Q 006763 200 VERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-EPEIQYVALRNINLIVQRRPTILAHE 278 (632)
Q Consensus 200 l~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls~-~~niryvaL~~l~~i~~~~p~~~~~~ 278 (632)
---+.++....|-++..=|+.+.++- ..++.+.. +.+++..+++. +.|.+.++.+.+..++.++|..-.-.
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKT----G~e~sv~r----Lm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~ 392 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKT----GTESSVDR----LMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVM 392 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHh----cchhHHHH----HHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHH
Confidence 01123455666777777777777762 23333333 34444455553 67889999999999999988532222
Q ss_pred ccee-EeccCC-chhHHHHHHHHHHHhc--CcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhh--hhHHHHHHH
Q 006763 279 IKVF-FCKYND-PIYVKMEKLEIMIKLA--SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE--RAAERCISV 352 (632)
Q Consensus 279 ~~~f-~~l~~d-d~~Ik~~kL~lL~~L~--n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~--~~~~~~v~~ 352 (632)
+..+ ..+.++ -..-|+-..|.+..++ +++--+..+..|.+|+.++ +|...+++-++.++.--| +....|+..
T Consensus 393 m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a~~Pskyir~ 470 (865)
T KOG1078|consen 393 MNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKAPNPSKYIRF 470 (865)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCCCCcchhhHH
Confidence 2111 112223 3556777888887776 4666778999999999965 466677777777777654 456789999
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHHhhccCChhhHH
Q 006763 353 LLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAK 403 (632)
Q Consensus 353 Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~ 403 (632)
+.+.+-..+..+..+++..+.++....+..+..+...|.+++.+- +.+++
T Consensus 471 iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~-DdevR 520 (865)
T KOG1078|consen 471 IYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDS-DDEVR 520 (865)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCc-hHHHH
Confidence 999998889999999999999998888888888888888888663 33443
No 45
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.79 E-value=0.00036 Score=67.44 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=79.4
Q ss_pred chhHHHHHHHHHHHHHhhCccchhcccce-eEeccCCchhHHHHHHHHHHHhcCcccHH---HHHHHHHHhhhhcCHHHH
Q 006763 253 EPEIQYVALRNINLIVQRRPTILAHEIKV-FFCKYNDPIYVKMEKLEIMIKLASDRNID---QVLLEFKEYATEVDVDFV 328 (632)
Q Consensus 253 ~~niryvaL~~l~~i~~~~p~~~~~~~~~-f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~---~Iv~EL~~yl~~~d~~~~ 328 (632)
+|.+|--++..+.-++.++|+++.++... +-|+.|+++.||+.++-+|..|..++-++ .++.++...+.|.|++++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 47889999999999999999999999884 56888889999999999999998775443 556788888889999999
Q ss_pred HHHHHHHHHHHHh-hhhh
Q 006763 329 RKAVRAIGRCAIK-LERA 345 (632)
Q Consensus 329 ~~~i~aIg~la~k-~~~~ 345 (632)
..+...+..+..+ .+..
T Consensus 81 ~~A~~~~~e~~~~~~~~~ 98 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNI 98 (178)
T ss_pred HHHHHHHHHHHHhccchH
Confidence 9999999999988 4443
No 46
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0064 Score=67.58 Aligned_cols=341 Identities=14% Similarity=0.102 Sum_probs=189.4
Q ss_pred HHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHH-HHHHH-HhhhCCCChHHHHHHHHHHHHhhhhcccccc--c
Q 006763 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEY-LCDPL-QRCLKDDDPYVRKTAAICVAKLYDINAELVE--D 118 (632)
Q Consensus 43 l~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~-l~~~v-~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~--~ 118 (632)
++...++.+++.+.+.--..--.-|...++-..+..... +...+ +.-..+.+..+|-+++....-+- ..|+.+. .
T Consensus 118 I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg-~~~ss~~~d~ 196 (823)
T KOG2259|consen 118 ISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLG-VSPSSLTHDR 196 (823)
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcc-cCCCcccccH
Confidence 555667777777776543333344555555443333221 11111 22223344445444443333222 2333332 1
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHh---cccc--CCH
Q 006763 119 RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALS---RYKA--ADA 193 (632)
Q Consensus 119 ~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~---~y~~--~~~ 193 (632)
......+..+..|.|+.|..+|+.+|..+.+ .+++....+.+.++.+.|..+-.....++++. +..| .+.
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-----g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSE-----GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-----cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 2334447777889999999999988888754 25666666777777777766554444444443 3332 111
Q ss_pred -HHHHH----HHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHH-HHHhcccch---------------------
Q 006763 194 -REAEN----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRN-LCKKMAPPL--------------------- 246 (632)
Q Consensus 194 -~~~~~----il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~-~~~~~~~~L--------------------- 246 (632)
.+-.+ ....+-..++..+-.|..+|.|.+..+.+ + +.+.+.+ +-+++.+.+
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~-v-See~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ-V-SEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSS 349 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHH-h-HHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCccc
Confidence 11112 23334445666667888888888776532 2 3333322 222222200
Q ss_pred --------------------------hhhccC----chhHHHHHHHHHHHHHhhCccchhccccee-EeccCCchhHHHH
Q 006763 247 --------------------------VTLLSA----EPEIQYVALRNINLIVQRRPTILAHEIKVF-FCKYNDPIYVKME 295 (632)
Q Consensus 247 --------------------------~~Lls~----~~niryvaL~~l~~i~~~~p~~~~~~~~~f-~~l~~dd~~Ik~~ 295 (632)
+.+.+. --|+|-.|..++..++...|.+...-+..+ .-++|+...+|.+
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ 429 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLK 429 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHH
Confidence 112221 137899999999999999998765544322 1233445779999
Q ss_pred HHHHHHHhcCcccHH-HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Q 006763 296 KLEIMIKLASDRNID-QVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKD 374 (632)
Q Consensus 296 kL~lL~~L~n~~Ni~-~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ 374 (632)
++.-|..+++.-.+. +.++.+++-+.+...+++..+-.-++.+-..--+....|++-+++.|..- +.=.++++..+.+
T Consensus 430 ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~ky-PqDrd~i~~cm~~ 508 (823)
T KOG2259|consen 430 AIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKY-PQDRDEILRCMGR 508 (823)
T ss_pred HHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhC-CCCcHHHHHHHHH
Confidence 999999888764443 56777777777777777655444443221111233445555555554431 2234678888888
Q ss_pred HHhhCcccHHHHHHHHHH
Q 006763 375 IFRRYPNTYESIIATLCE 392 (632)
Q Consensus 375 ilr~~p~~~~~ii~~L~~ 392 (632)
|-++++.+...+...+.+
T Consensus 509 iGqnH~~lv~s~m~rfl~ 526 (823)
T KOG2259|consen 509 IGQNHRRLVLSNMGRFLE 526 (823)
T ss_pred HhccChhhHHHHHHHHHH
Confidence 888888776666666654
No 47
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.70 E-value=0.0025 Score=65.04 Aligned_cols=225 Identities=16% Similarity=0.256 Sum_probs=145.5
Q ss_pred HHHHhhhC-CCChHHHHHHHHHHHHh--hhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccH
Q 006763 84 DPLQRCLK-DDDPYVRKTAAICVAKL--YDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (632)
Q Consensus 84 ~~v~~~L~-d~~pyVRK~A~~al~kl--~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~ 160 (632)
..+...|. ..+|+++.+|..++... |..+.+.+.+.|-++.+..+|.++++.|.-.|+.++..++.... ....+.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e--n~~~Ik 92 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE--NQEQIK 92 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh--hHHHHH
Confidence 34555565 47899999999988875 34456777777888999999999999999999999987754432 122233
Q ss_pred HHHHHHHHHhhc--cChhhHHHHHHHHhccccCCH--HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHH
Q 006763 161 HTLSKLLTALNE--CTEWGQVFILDALSRYKAADA--REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVR 236 (632)
Q Consensus 161 ~~~~~Ll~~l~~--~~ew~qi~lL~lL~~y~~~~~--~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~ 236 (632)
..+.++++.+.. ++...|..-|++|....-.+. ......+..+..+|.+.|..+...+.|+++++. .++...+
T Consensus 93 ~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS---~np~~~~ 169 (254)
T PF04826_consen 93 MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS---ENPDMTR 169 (254)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc---cCHHHHH
Confidence 456666665433 366789999999998864432 223344555667888989999999999999874 3677666
Q ss_pred HHHH-hcccchhhhccC--chhHHHHHHHHHHHHHhhC-c--cchh-cccceeEeccCCchhHHHHHHHHHHHhcCcccH
Q 006763 237 NLCK-KMAPPLVTLLSA--EPEIQYVALRNINLIVQRR-P--TILA-HEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNI 309 (632)
Q Consensus 237 ~~~~-~~~~~L~~Lls~--~~niryvaL~~l~~i~~~~-p--~~~~-~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni 309 (632)
.++. ++...++.|+.+ +.++-.-+|.-+..|.... + ..+. .+ ++.+ -|+.+-.+ .
T Consensus 170 ~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~-------~~~~---------~L~~~~~e--~ 231 (254)
T PF04826_consen 170 ELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDD-------FSED---------SLFSLFGE--S 231 (254)
T ss_pred HHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceecccc-------CCch---------hHHHHHcc--H
Confidence 5432 344556667753 4566666676666664321 1 1111 11 1111 11222222 3
Q ss_pred HHHHHHHHHhhhhcCHHHHHHH
Q 006763 310 DQVLLEFKEYATEVDVDFVRKA 331 (632)
Q Consensus 310 ~~Iv~EL~~yl~~~d~~~~~~~ 331 (632)
+...++|..-+...|++++.++
T Consensus 232 ~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 232 SQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHHHHHHHcCCCHHHhhhc
Confidence 4566777776667788887664
No 48
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.69 E-value=0.014 Score=67.47 Aligned_cols=366 Identities=17% Similarity=0.229 Sum_probs=203.8
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccC--CHHH--HHH
Q 006763 123 ESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAA--DARE--AEN 198 (632)
Q Consensus 123 ~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~--~~~~--~~~ 198 (632)
..++.++..++ .++..|+.+|..+..+............+..|++.|..-++=..+..+.+|.+..-. +... ...
T Consensus 253 kk~~~l~~kQe-qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~g 331 (708)
T PF05804_consen 253 KKLQTLIRKQE-QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESG 331 (708)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 34555666555 566678888888876643222222334466677777767777888777888776532 2222 235
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHH-hcccchhhhccCchhHHHHHHHHHHHHHhhC--ccch
Q 006763 199 IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLSAEPEIQYVALRNINLIVQRR--PTIL 275 (632)
Q Consensus 199 il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~-~~~~~L~~Lls~~~niryvaL~~l~~i~~~~--p~~~ 275 (632)
+++.+..++++.+.-++-.++++++++.- +++....+++ .+++.|+.++. +++.+.+++..+..|+... ...|
T Consensus 332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSf---d~~~R~~mV~~GlIPkLv~LL~-d~~~~~val~iLy~LS~dd~~r~~f 407 (708)
T PF05804_consen 332 IVEKLLKLLPSENEDLVNVALRLLFNLSF---DPELRSQMVSLGLIPKLVELLK-DPNFREVALKILYNLSMDDEARSMF 407 (708)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhCc---CHHHHHHHHHCCCcHHHHHHhC-CCchHHHHHHHHHHhccCHhhHHHH
Confidence 78888889999998899999999998632 4554443322 35677777776 4577888898888887643 2233
Q ss_pred hc--ccc-eeE-eccCCchhHHHHHHHHHHHhc-CcccHHHHHH-----HHHHhhhhcCHHHHHHHHHHHHHHHHhhhhh
Q 006763 276 AH--EIK-VFF-CKYNDPIYVKMEKLEIMIKLA-SDRNIDQVLL-----EFKEYATEVDVDFVRKAVRAIGRCAIKLERA 345 (632)
Q Consensus 276 ~~--~~~-~f~-~l~~dd~~Ik~~kL~lL~~L~-n~~Ni~~Iv~-----EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~ 345 (632)
.. .+. ... ...+.+..+....+-++..++ ++.|++.+++ .|.+.+....+.+ +++-|..++..-++.
T Consensus 408 ~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~ 484 (708)
T PF05804_consen 408 AYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPL 484 (708)
T ss_pred hhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchH
Confidence 21 111 111 122334456666777777776 5677776654 3333332222222 223444445443232
Q ss_pred HH---HHHHHHHHHHhhh-chhhHHHHHHHHHHHHhhCcccH-----HHHHHHHHHhhcc-CChhhHHHHHHHHHhcccC
Q 006763 346 AE---RCISVLLELIKIK-VNYVVQEAIIVIKDIFRRYPNTY-----ESIIATLCESLDT-LDEPEAKASMIWIIGEYAE 415 (632)
Q Consensus 346 ~~---~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ilr~~p~~~-----~~ii~~L~~~l~~-i~~p~a~~~~iWiLGEy~~ 415 (632)
-. .++.-+++++..+ .+...-|++-.+.++-....+.. ...++.|.+.+.. ..+++..-.++-++|--+.
T Consensus 485 k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~ 564 (708)
T PF05804_consen 485 KELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS 564 (708)
T ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC
Confidence 22 2344444554443 23444555555555532221211 1234455555532 2344454444445665443
Q ss_pred ccCCH-----HHHHHHHhhhC--CCCCHHHHHHHHHHHHHHhhcCCCC----ChHHHHHHHHHhhhcCCCChHHHhhHHH
Q 006763 416 RIDNA-----DELLESFLESF--PEEPAQVQLQLLTATVKLFLKKPTE----GPQQMIQVVLNNATVETDNPDLRDRAYI 484 (632)
Q Consensus 416 ~i~~~-----~~~l~~l~~~f--~~e~~~vq~~iLta~~Kl~~~~p~e----~~~~~v~~ll~~~~~~s~~~dvrdRA~~ 484 (632)
.-.-+ ..+++.+++-| ..|+.+.-.|++-++.++....+.- +-.+.+.+++.. .++.|++||.-|-.
T Consensus 565 d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL--~~d~N~~ir~~~d~ 642 (708)
T PF05804_consen 565 DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDL--MHDKNAEIRKVCDN 642 (708)
T ss_pred CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHH--hcCCCHHHHHHHHH
Confidence 21111 12333333322 3578889999999999997764320 012355667775 35789999998887
Q ss_pred HHHHhc-CCHHHHHh
Q 006763 485 YWRLLS-TDPEAAKD 498 (632)
Q Consensus 485 y~~LL~-~~~~~~~~ 498 (632)
..-++. .+.+-+++
T Consensus 643 ~Ldii~e~d~~w~~r 657 (708)
T PF05804_consen 643 ALDIIAEYDEEWAER 657 (708)
T ss_pred HHHHHHHhCHHHHHH
Confidence 777653 34444444
No 49
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.69 E-value=0.0075 Score=66.45 Aligned_cols=436 Identities=19% Similarity=0.205 Sum_probs=226.5
Q ss_pred HHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHhhhhcc-cccc-ccchHHH
Q 006763 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINA-ELVE-DRGFLES 124 (632)
Q Consensus 48 iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~~~p-~~v~-~~~~~~~ 124 (632)
+.+++-|+.|.+|++|--.=|+.+-....-=++.+.|.+..+..+ +++--|.+.+-|+-++..+.. .... -.++++.
T Consensus 283 vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~c 362 (975)
T COG5181 283 VSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKC 362 (975)
T ss_pred eeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHH
Confidence 456788999999999988877777665554456667778877777 489999999999999887643 2222 1257788
Q ss_pred HHHHhcCCChhHH---HHHHHHHHHHHhcCCCCchhcc------------HHHHHHHHHHhh----ccC-hh---hHHHH
Q 006763 125 LKDLISDNNPMVV---ANAVAALAEIEENSSRPIFEIT------------SHTLSKLLTALN----ECT-EW---GQVFI 181 (632)
Q Consensus 125 L~~lL~D~d~~Vv---~~Al~aL~eI~~~~~~~~~~l~------------~~~~~~Ll~~l~----~~~-ew---~qi~l 181 (632)
+.++|.|.+--|. +++++.+.|...-.+...|+-. -..+..+|+... -.+ |+ ..-..
T Consensus 363 i~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~ 442 (975)
T COG5181 363 ISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREH 442 (975)
T ss_pred HHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHH
Confidence 8999999886554 5566665554321111111100 011223333321 112 11 12233
Q ss_pred HHHHhccccCCHHHHHH-------------------HHHHHHHhhc-------C-----CCHHHHHHHHHH---------
Q 006763 182 LDALSRYKAADAREAEN-------------------IVERVTPRLQ-------H-----ANCAVVLSAVKM--------- 221 (632)
Q Consensus 182 L~lL~~y~~~~~~~~~~-------------------il~~v~~~L~-------~-----~n~aVv~eaik~--------- 221 (632)
++++.+--....++... +-+.+.+-+- + ++--|++.++-+
T Consensus 443 m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v 522 (975)
T COG5181 443 MEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRV 522 (975)
T ss_pred HHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHH
Confidence 44443322222222211 1112222110 1 122233333221
Q ss_pred HHHhhhccCChH-HHH----HHHHhcccchhhhccC-chhHHHHHHHHHHHHHhhC--------c---cc-------hhc
Q 006763 222 ILQQMELITSTD-VVR----NLCKKMAPPLVTLLSA-EPEIQYVALRNINLIVQRR--------P---TI-------LAH 277 (632)
Q Consensus 222 i~~~~~~i~~~~-~~~----~~~~~~~~~L~~Lls~-~~niryvaL~~l~~i~~~~--------p---~~-------~~~ 277 (632)
+-+++++..++. -.+ .++.++.+.|.++=-. .-+-||. +.+..-.+.. | .+ -++
T Consensus 523 ~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~--d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp 600 (975)
T COG5181 523 SRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLY--DSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKP 600 (975)
T ss_pred HHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHH--HHHHHHHHhccccccEEEecccceeeehhhccCc
Confidence 112222233321 111 2223333333332212 2233332 2222111211 1 00 133
Q ss_pred cc-----ceeEeccCCchhHHHHHHHHHHHhcCc-cc------HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhh---
Q 006763 278 EI-----KVFFCKYNDPIYVKMEKLEIMIKLASD-RN------IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL--- 342 (632)
Q Consensus 278 ~~-----~~f~~l~~dd~~Ik~~kL~lL~~L~n~-~N------i~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~--- 342 (632)
|. .+++.+.+.++.+|.+++++...++-- +| ....=.-|.+|+.+.+++.--.++.+|+.+..-.
T Consensus 601 ~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 601 HLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred chHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 43 245677889999999999988776521 11 1111122447777888888777777777665432
Q ss_pred --hhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCccc------------------------H-------------
Q 006763 343 --ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT------------------------Y------------- 383 (632)
Q Consensus 343 --~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~------------------------~------------- 383 (632)
.+-...++..+..+|+++...|....+..+..|..+.|+. +
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 1224456666666666665555555544444444333321 1
Q ss_pred ---HHHHHHHHHhhccCChhh---HHHHHHHHHhcccCccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 006763 384 ---ESIIATLCESLDTLDEPE---AKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEG 457 (632)
Q Consensus 384 ---~~ii~~L~~~l~~i~~p~---a~~~~iWiLGEy~~~i~~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~ 457 (632)
..++..|.+.|+. ++-+ .-+..+-|+|||+. +-.++-.+.+.+..-...||.-+|.|.+-+|-.....
T Consensus 761 iGPqdvL~~LlnnLkv-qeRq~RvctsvaI~iVae~cg----pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~- 834 (975)
T COG5181 761 IGPQDVLDILLNNLKV-QERQQRVCTSVAISIVAEYCG----PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQA- 834 (975)
T ss_pred cCHHHHHHHHHhcchH-HHHHhhhhhhhhhhhhHhhcC----chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHH-
Confidence 1223333333321 2211 12456788888876 3455666667776667789999999888777554431
Q ss_pred hHH---HHHHHHHhhhcCCCChHHHhhHHHHHHHhcCC
Q 006763 458 PQQ---MIQVVLNNATVETDNPDLRDRAYIYWRLLSTD 492 (632)
Q Consensus 458 ~~~---~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~~ 492 (632)
..+ .+.-+++-+.. +.|+-=||-|.-..+=|..+
T Consensus 835 s~dYvy~itPlleDAlt-DrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 835 SLDYVYSITPLLEDALT-DRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHHHHHHhhHHHHhhhc-ccchHHHHHHHHHHHHHhcC
Confidence 222 33345665654 57888899888777766543
No 50
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.68 E-value=0.075 Score=60.07 Aligned_cols=427 Identities=16% Similarity=0.234 Sum_probs=235.4
Q ss_pred HHHhhcCCCcchHHHHHHHHHHhcCCCC---c-HHHHHHHHHHhh-----cCC---CChHHHhHHHHHhcCCCchhhHHH
Q 006763 14 VVNCMQTENLELKKLVYLYLINYAKSQP---D-LAILAVNTFVKD-----SQD---PNPLIRALAVRTMGCIRVDKITEY 81 (632)
Q Consensus 14 vi~l~~s~d~~~Krl~YLyl~~~~~~~~---e-l~lL~iNtl~kD-----l~~---~np~ir~lALr~L~~I~~~ei~~~ 81 (632)
.++-++|+|-+.||++...+..+..... + +-.-+...|-+- +.. .+-.+.-.+...-.+++..+++.-
T Consensus 641 l~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R 720 (1172)
T KOG0213|consen 641 LIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSR 720 (1172)
T ss_pred HHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHH
Confidence 3445789999999999999988875431 1 011112222111 111 112233334444455666666555
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccc-cc---ccchHHHHHHHhc--CCChhHHHHHHHHHHHHHhcCCCCc
Q 006763 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL-VE---DRGFLESLKDLIS--DNNPMVVANAVAALAEIEENSSRPI 155 (632)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~-v~---~~~~~~~L~~lL~--D~d~~Vv~~Al~aL~eI~~~~~~~~ 155 (632)
+..-+.|.++--||-++-.+-|++..-+-. +. ++.+++.+.-.+. +..-+|+.+.+.++..-.....+
T Consensus 721 ----~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~k-- 794 (1172)
T KOG0213|consen 721 ----VVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVK-- 794 (1172)
T ss_pred ----HhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccc--
Confidence 445567777778999999999998754422 11 1235555544554 34456776766665433222222
Q ss_pred hhccHHHHHHHHHHhhccChhhHHHHHHHHhccccC-----CHHHHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHhhh
Q 006763 156 FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAA-----DAREAENIVERVTPRLQHANC---AVVLSAVKMILQQME 227 (632)
Q Consensus 156 ~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~-----~~~~~~~il~~v~~~L~~~n~---aVv~eaik~i~~~~~ 227 (632)
..++..+..+|..|+..++-....-.+++++..+- +.+....+=..+-..|..-.+ .-++.|+++|++...
T Consensus 795 -pylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvig 873 (1172)
T KOG0213|consen 795 -PYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIG 873 (1172)
T ss_pred -cchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence 23445667777788888887777777776655421 112222222222233433344 345677777765421
Q ss_pred ccC-ChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHhcC
Q 006763 228 LIT-STDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLAS 305 (632)
Q Consensus 228 ~i~-~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n 305 (632)
.-. .|. ++ .+.+.|.-+| +++.-++--.+..+..|+.+.|+.+.
T Consensus 874 m~km~pP-i~----dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~----------------------------- 919 (1172)
T KOG0213|consen 874 MTKMTPP-IK----DLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVS----------------------------- 919 (1172)
T ss_pred ccccCCC-hh----hhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCC-----------------------------
Confidence 000 011 12 2344444455 45666777777778888887776431
Q ss_pred cccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchh----------hHHHH---HHHH
Q 006763 306 DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNY----------VVQEA---IIVI 372 (632)
Q Consensus 306 ~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~----------v~~e~---i~~l 372 (632)
..-|-.|.=||++.+...+.+++|.++...|-||.-..+ ...+.+|++-|+...-+ |+.|. ..++
T Consensus 920 aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP--qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVL 997 (1172)
T KOG0213|consen 920 AREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP--QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVL 997 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH--HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhh
Confidence 223556666777777777888888888888888877654 45677777766654321 22222 1233
Q ss_pred HHHHhhC--cc--cHHHHHHHHH---Hhh---------------cc-CCh-hhH-HHHHH-----HHHhcccCccCCH-H
Q 006763 373 KDIFRRY--PN--TYESIIATLC---ESL---------------DT-LDE-PEA-KASMI-----WIIGEYAERIDNA-D 421 (632)
Q Consensus 373 ~~ilr~~--p~--~~~~ii~~L~---~~l---------------~~-i~~-p~a-~~~~i-----WiLGEy~~~i~~~-~ 421 (632)
--++..| |+ .|..++..|+ +++ ++ +.+ ..+ ++... -.||=||.-.+++ .
T Consensus 998 PalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~i 1077 (1172)
T KOG0213|consen 998 PALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALI 1077 (1172)
T ss_pred HHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHH
Confidence 3444433 33 2333333332 221 11 111 111 22111 3466666554442 3
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcC
Q 006763 422 ELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLST 491 (632)
Q Consensus 422 ~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~ 491 (632)
.+|..+..++.+.+|.|+..+..++=-+...-. .+.+++++++-.+ +..--||+| ||+.++.
T Consensus 1078 HLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg---~~~~~~Y~~QGLF--HParkVR~~---yw~vyn~ 1139 (1172)
T KOG0213|consen 1078 HLLNLIWPNILETSPHVIQAFDEAMEGLRVALG---PQAMLKYCLQGLF--HPARKVRKR---YWTVYNS 1139 (1172)
T ss_pred HHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhc---hHHHHHHHHHhcc--CcHHHHHHH---HHHHHHh
Confidence 455556667788899999998888776654433 4668888888544 356679986 6666553
No 51
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.64 E-value=0.13 Score=59.70 Aligned_cols=416 Identities=17% Similarity=0.186 Sum_probs=212.0
Q ss_pred hHHHhHHHHHhcCCCch--hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccc---cchHHHHHHHhcCCCh
Q 006763 60 PLIRALAVRTMGCIRVD--KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED---RGFLESLKDLISDNNP 134 (632)
Q Consensus 60 p~ir~lALr~L~~I~~~--ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~---~~~~~~L~~lL~D~d~ 134 (632)
.-+|++.+-+++.+... .....+++.+..-+.-..--.|-....++-++...+.+.++. +..+..+-.|+.++|-
T Consensus 628 ~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdl 707 (1233)
T KOG1824|consen 628 TAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDL 707 (1233)
T ss_pred HHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHH
Confidence 34555555555554432 233333333333222222234444455555666555444332 1345667778999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHH----hccccCCHHHHHHHHHHHHHhhcC-
Q 006763 135 MVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDAL----SRYKAADAREAENIVERVTPRLQH- 209 (632)
Q Consensus 135 ~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL----~~y~~~~~~~~~~il~~v~~~L~~- 209 (632)
.|-..|+..+..+....+........+.+..++..+. +|..|-..+..+ .........+. ++++ +..+++.
T Consensus 708 hvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~--Spllqg~al~~~l~~f~alV~t~~~~l-~y~~-l~s~lt~P 783 (1233)
T KOG1824|consen 708 HVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLR--SPLLQGGALSALLLFFQALVITKEPDL-DYIS-LLSLLTAP 783 (1233)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhh--CccccchHHHHHHHHHHHHHhcCCCCc-cHHH-HHHHHcCC
Confidence 9999999999888766554333333334444444433 344433222222 11111111111 1222 2223321
Q ss_pred ----CC----HHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhcc--CchhHHHHHHHHHHHHHhhCccchhccc
Q 006763 210 ----AN----CAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQRRPTILAHEI 279 (632)
Q Consensus 210 ----~n----~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls--~~~niryvaL~~l~~i~~~~p~~~~~~~ 279 (632)
.. --..++.++++-.+... .++--+.+..++. ..+.+ ++.-+|..++-++..+..+.+..-++.+
T Consensus 784 V~~~~~~~l~kqa~~siA~cvA~Lt~~--~~~~s~s~a~kl~---~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~ 858 (1233)
T KOG1824|consen 784 VYEQVTDGLHKQAYYSIAKCVAALTCA--CPQKSKSLATKLI---QDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNEL 858 (1233)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHh--ccccchhHHHHHH---HHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhh
Confidence 11 01223333333222111 1111112212222 23453 4567999999999999887655444444
Q ss_pred c--eeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHh-----hhhhHHHHHHH
Q 006763 280 K--VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK-----LERAAERCISV 352 (632)
Q Consensus 280 ~--~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k-----~~~~~~~~v~~ 352 (632)
. ++.++.+....||..|-..|-.++ ..|....++++++.+..- +.=+.-+..++.....+ +-+..+.+.+.
T Consensus 859 ~~~iieaf~sp~edvksAAs~ALGsl~-vgnl~~yLpfil~qi~sq-pk~QyLLLhSlkevi~~~svd~~~~~v~~IW~l 936 (1233)
T KOG1824|consen 859 KDTIIEAFNSPSEDVKSAASYALGSLA-VGNLPKYLPFILEQIESQ-PKRQYLLLHSLKEVIVSASVDGLKPYVEKIWAL 936 (1233)
T ss_pred HHHHHHHcCCChHHHHHHHHHHhhhhh-cCchHhHHHHHHHHHhcc-hHhHHHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3 456676777889998888887765 467777888887655431 11111222222222222 12334445555
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHHhhccCChhhHHHHHH----HHHhcccCccCC-HHHHHHHH
Q 006763 353 LLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMI----WIIGEYAERIDN-ADELLESF 427 (632)
Q Consensus 353 Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~~i----WiLGEy~~~i~~-~~~~l~~l 427 (632)
|++-.+...+..+.=+...+..++-..|+. .+.+|-..+.+ ..+..+..++ +.+.+-.+.++. -...+..|
T Consensus 937 L~k~cE~~eegtR~vvAECLGkL~l~epes---LlpkL~~~~~S-~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~f 1012 (1233)
T KOG1824|consen 937 LFKHCECAEEGTRNVVAECLGKLVLIEPES---LLPKLKLLLRS-EASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDF 1012 (1233)
T ss_pred HHHhcccchhhhHHHHHHHhhhHHhCChHH---HHHHHHHHhcC-CCcchhhhhhheeeeeecCCCCccCHHHHHHHHHH
Confidence 555444444444333344555566566653 44555443322 2233333332 344444433332 23456788
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcC--------------------CCChHHHhhHHHHH-
Q 006763 428 LESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVE--------------------TDNPDLRDRAYIYW- 486 (632)
Q Consensus 428 ~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~--------------------s~~~dvrdRA~~y~- 486 (632)
+..|.+.+.+||...|.++--.....|+= +++++..+|.+.+.+ ++-.|+|+-|+|..
T Consensus 1013 l~~~~dpDl~VrrvaLvv~nSaahNKpsl-IrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmy 1091 (1233)
T KOG1824|consen 1013 LKLLRDPDLEVRRVALVVLNSAAHNKPSL-IRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMY 1091 (1233)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHccCHhH-HHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHH
Confidence 88889999999999998888877777763 566666655543211 24578999998854
Q ss_pred HHhcC
Q 006763 487 RLLST 491 (632)
Q Consensus 487 ~LL~~ 491 (632)
.||..
T Consensus 1092 tLLds 1096 (1233)
T KOG1824|consen 1092 TLLDS 1096 (1233)
T ss_pred HHHHh
Confidence 45543
No 52
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.074 Score=60.40 Aligned_cols=410 Identities=16% Similarity=0.180 Sum_probs=218.2
Q ss_pred CCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhh----HHHHHHHHHhhhCCCCh-HHHHHHHHHHHHhhh-hc
Q 006763 39 SQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI----TEYLCDPLQRCLKDDDP-YVRKTAAICVAKLYD-IN 112 (632)
Q Consensus 39 ~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei----~~~l~~~v~~~L~d~~p-yVRK~A~~al~kl~~-~~ 112 (632)
..+|.--.+=|.+.+-|.++.|.++..|=.+++.|..-|+ .+.++..++....+..+ .||..++.++.-+.+ .+
T Consensus 83 l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~ 162 (859)
T KOG1241|consen 83 LPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDID 162 (859)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCC
Confidence 3344444455556666666666666666665555544333 34555555666666444 488888888888775 67
Q ss_pred cccccc---cchHHHHHHHhc-CCChhHHHHHHHHHHHHHhcCCCCchh--ccHHHHHH-HHHHhhccChhhHHHHHHHH
Q 006763 113 AELVED---RGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPIFE--ITSHTLSK-LLTALNECTEWGQVFILDAL 185 (632)
Q Consensus 113 p~~v~~---~~~~~~L~~lL~-D~d~~Vv~~Al~aL~eI~~~~~~~~~~--l~~~~~~~-Ll~~l~~~~ew~qi~lL~lL 185 (632)
|+.+.. .-+..++..+.+ +++..|..+|+.+|+.-..-... .|. -.++.+.+ .|..-...++-.|+..+.+|
T Consensus 163 pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~-nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~Cl 241 (859)
T KOG1241|consen 163 PEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA-NFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCL 241 (859)
T ss_pred HHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH-hhccHhhhceeeeeeeecccCCcHHHHHHHHHHH
Confidence 775442 112233444444 56777888888888643211000 000 00000000 00110112333455555555
Q ss_pred hccccCCHHHH-----HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhc--cCchhHHH
Q 006763 186 SRYKAADAREA-----ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL--SAEPEIQY 258 (632)
Q Consensus 186 ~~y~~~~~~~~-----~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll--s~~~niry 258 (632)
.+.-.-.-+.+ +.++..-...+++.|..|.+.++..-.... +++ +.-.. ... ... ...|--+|
T Consensus 242 vkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstic----eEE-iD~~~-e~~----e~~d~~~~p~~~~ 311 (859)
T KOG1241|consen 242 VKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTIC----EEE-IDLAI-EYG----EAVDQGLPPSSKY 311 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH----HHH-HHHHH-HHH----HHhhcCCCchhhH
Confidence 43221111111 224444455678889999999988765432 121 11000 000 011 11233355
Q ss_pred HHHHHHHHHHhhCccchhcccceeEeccCCchhHHHH---HHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 006763 259 VALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKME---KLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAI 335 (632)
Q Consensus 259 vaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~---kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aI 335 (632)
.+...+..++..--+++.+| =.+-++|+..+.+- .|.+....+..+=+..++..+.+.++..|=..+..++-+.
T Consensus 312 fa~~a~~~v~P~Ll~~L~kq---de~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAF 388 (859)
T KOG1241|consen 312 FARQALQDVVPVLLELLTKQ---DEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAF 388 (859)
T ss_pred HHHHHHhHhhHHHHHHHHhC---CCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHH
Confidence 55555554443211122111 12344666666664 4677777777776777777777777778888888888888
Q ss_pred HHHHHh-----hhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccH------HHHHHHHHHhhccCChhhHHH
Q 006763 336 GRCAIK-----LERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY------ESIIATLCESLDTLDEPEAKA 404 (632)
Q Consensus 336 g~la~k-----~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~------~~ii~~L~~~l~~i~~p~a~~ 404 (632)
|.+-+- .-+.....+..++.++.++.-.+.+.+...+..|....|+.. ...+..+.+-+. ++|..-.
T Consensus 389 GSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~--DePrva~ 466 (859)
T KOG1241|consen 389 GSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN--DEPRVAS 466 (859)
T ss_pred HhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh--hCchHHH
Confidence 765442 233445567788888887666666666667777776665431 223344444443 3677777
Q ss_pred HHHHHHhcccCcc-----CC---------HHHHHHHHhhhCCC---CCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 006763 405 SMIWIIGEYAERI-----DN---------ADELLESFLESFPE---EPAQVQLQLLTATVKLFLKKPTEGPQQMIQVV 465 (632)
Q Consensus 405 ~~iWiLGEy~~~i-----~~---------~~~~l~~l~~~f~~---e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~l 465 (632)
.++|-+--+++.+ ++ -++++..+++.-.. -....|.+.-.|++-+....|.+ +.++++++
T Consensus 467 N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~-vy~~v~~~ 543 (859)
T KOG1241|consen 467 NVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD-VYPMVQKL 543 (859)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH-HHHHHHHH
Confidence 8888765544321 11 13455555543222 23667888878887776666653 55555554
No 53
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.028 Score=62.56 Aligned_cols=265 Identities=15% Similarity=0.151 Sum_probs=145.3
Q ss_pred CCCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCC---CcHHHHHHHHHHhhcCCCChHH----HhHHHH----Hhc
Q 006763 3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ---PDLAILAVNTFVKDSQDPNPLI----RALAVR----TMG 71 (632)
Q Consensus 3 lG~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~---~el~lL~iNtl~kDl~~~np~i----r~lALr----~L~ 71 (632)
.|.+.+.......+++.+.+...++=+=-.+..+.+.+ .+.-...+-++.+-.+|.+... .++|.. .||
T Consensus 128 ~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg 207 (569)
T KOG1242|consen 128 KGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG 207 (569)
T ss_pred hccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC
Confidence 46666777778888888777665443322222222211 1111223445555555554332 233333 334
Q ss_pred CCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhh-hccccccc--------------------------------
Q 006763 72 CIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYD-INAELVED-------------------------------- 118 (632)
Q Consensus 72 ~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~-~~p~~v~~-------------------------------- 118 (632)
....|-++ .+.|.|..+..|..++||..|..|+--+.+ .++..++.
T Consensus 208 ~~~EPyiv-~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap 286 (569)
T KOG1242|consen 208 PPFEPYIV-PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP 286 (569)
T ss_pred CCCCchHH-hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch
Confidence 33444444 456788888999999999999888765544 23333321
Q ss_pred -------cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHh-cccc
Q 006763 119 -------RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALS-RYKA 190 (632)
Q Consensus 119 -------~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~-~y~~ 190 (632)
+.+++.+.+.|.|++|.|.-++..++..++..... ..+.+.+..|++.+.+++....-.+-.+.+ .|..
T Consensus 287 ~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~ 363 (569)
T KOG1242|consen 287 KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPTLLDALADPSCYTPECLDSLGATTFVA 363 (569)
T ss_pred HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhcCcccchHHHHHhhcceeeee
Confidence 13334445556666666666666666555432211 112334556666665555333322222222 1110
Q ss_pred -CCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHH
Q 006763 191 -ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIV 268 (632)
Q Consensus 191 -~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~ 268 (632)
-++.....++..+..-+..++...-..++..+-++...++++.-+..+...+.+.|-.-+. ..||+|+++.+.+..+.
T Consensus 364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALL 443 (569)
T ss_pred eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 0112223344445455666777777888888777665566776555555555555544443 46999999999998887
Q ss_pred hhC
Q 006763 269 QRR 271 (632)
Q Consensus 269 ~~~ 271 (632)
.+-
T Consensus 444 e~~ 446 (569)
T KOG1242|consen 444 ERL 446 (569)
T ss_pred HHH
Confidence 653
No 54
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.61 E-value=0.0023 Score=69.76 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=72.2
Q ss_pred HHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHH
Q 006763 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (632)
Q Consensus 47 ~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~ 126 (632)
++..+.+-+.+.++.+|.-|.+.|+.|..+...+. +.+.+.|.+|.||..++-++.. ...+ -.+.+.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~----L~~~L~~~~p~vR~aal~al~~-r~~~--------~~~~L~ 153 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPW----LEPLLAASEPPGRAIGLAALGA-HRHD--------PGPALE 153 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHH----HHHHhcCCChHHHHHHHHHHHh-hccC--------hHHHHH
Confidence 48888999999999999999999999999887765 6666789999999888754444 2221 235678
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhc
Q 006763 127 DLISDNNPMVVANAVAALAEIEEN 150 (632)
Q Consensus 127 ~lL~D~d~~Vv~~Al~aL~eI~~~ 150 (632)
.+|+|.|+.|...|+.++.++...
T Consensus 154 ~~L~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 154 AALTHEDALVRAAALRALGELPRR 177 (410)
T ss_pred HHhcCCCHHHHHHHHHHHHhhccc
Confidence 888899999999999999888643
No 55
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.089 Score=57.90 Aligned_cols=396 Identities=15% Similarity=0.171 Sum_probs=222.6
Q ss_pred HHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhh-hhcccccc-ccc
Q 006763 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLY-DINAELVE-DRG 120 (632)
Q Consensus 43 l~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~-~~~p~~v~-~~~ 120 (632)
.+.+-+--+.||+.+.|.+-+- .++++. -..+...+.+..-||-+.++++-+. -+.++... -.+
T Consensus 19 aaalelEk~Vk~l~~~~~~~~i-----------~k~I~~---L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 19 AAALELEKLVKDLVNNNDYDQI-----------RKVISE---LAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred HHHHHHHHHHHHHHccCcHHHH-----------HHHHHH---HHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 4556666777777776655431 122222 2344455667777888888877653 23333321 124
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccCh--hhHHHHHH-HHhccccCCH--HH
Q 006763 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTE--WGQVFILD-ALSRYKAADA--RE 195 (632)
Q Consensus 121 ~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~e--w~qi~lL~-lL~~y~~~~~--~~ 195 (632)
+++.+-.++.|+|..|..-|+-+++.|++--.+..+......+.-+++...+.+. -+-..+|+ +++....+.. -.
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFs 164 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFS 164 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccC
Confidence 6677778999999999999999999998765555555444455555555444322 22223333 3332222111 12
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHh---hC
Q 006763 196 AENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQ---RR 271 (632)
Q Consensus 196 ~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~---~~ 271 (632)
...++..+..++.-.|+....-.++.+..+ +.+++-+++.- ...+.+.|...|+ +.+++|-+.=..+..+.+ ..
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~L-ds~P~~~m~~y-l~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVL-DSVPDLEMISY-LPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hcCCcHHHHhc-chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 345666666777778888887777776654 23344444431 2234445556665 567888665554444433 23
Q ss_pred ccchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhh----HH
Q 006763 272 PTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA----AE 347 (632)
Q Consensus 272 p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~----~~ 347 (632)
|..+ +..++++-+...+.+.+++++.+++.-|-....-++++ ..
T Consensus 243 P~s~--------------------------------d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s 290 (675)
T KOG0212|consen 243 PSSM--------------------------------DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLS 290 (675)
T ss_pred cccc--------------------------------CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhh
Confidence 4333 23334444445555556666666655555444333322 23
Q ss_pred HHHHHHHHHHhhhchhhHHHHHH----HHHHHHhhCccc----HHHHHHHHHHhhccCChhhHH-HHHHHHHhcccCc--
Q 006763 348 RCISVLLELIKIKVNYVVQEAII----VIKDIFRRYPNT----YESIIATLCESLDTLDEPEAK-ASMIWIIGEYAER-- 416 (632)
Q Consensus 348 ~~v~~Ll~ll~~~~~~v~~e~i~----~l~~ilr~~p~~----~~~ii~~L~~~l~~i~~p~a~-~~~iWiLGEy~~~-- 416 (632)
.|+..++.++......-..++.. .+..++...-.. +..+++.|.+++.+- .-+++ ++.=||+-=|...
T Consensus 291 ~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ 369 (675)
T KOG0212|consen 291 GILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPG 369 (675)
T ss_pred hhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcc
Confidence 44444555555444321222222 122222211111 235666666666542 22344 5556888666443
Q ss_pred --cCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHh
Q 006763 417 --IDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (632)
Q Consensus 417 --i~~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL 489 (632)
+-....++..+++.+.+.+.+|-...|..++-++....+-...+.+..+|+...+ +..-++.||.+..|=|
T Consensus 370 ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e--~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 370 QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKE--DTKLLEVRGNLIIRQL 442 (675)
T ss_pred hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhh--hhHHHHhhhhHHHHHH
Confidence 2234567788888888888999888888888887654332367778888887543 4556788888877743
No 56
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=0.00053 Score=80.28 Aligned_cols=155 Identities=23% Similarity=0.294 Sum_probs=119.7
Q ss_pred chhHHHHHhh----cCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcC-CCChHHHhHHHHHhcCC--CchhhHHH
Q 006763 9 SLFTDVVNCM----QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCI--RVDKITEY 81 (632)
Q Consensus 9 ~lf~~vi~l~----~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~-~~np~ir~lALr~L~~I--~~~ei~~~ 81 (632)
.+-|-|++.+ -..|.++..-++|++..+.--..+.+--.-..|-.=++ +|||.||+.+.-.+|-+ +-|.+++.
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~ 998 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEP 998 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccch
Confidence 3455566655 34679999999999998866555543333334444454 89999999999999987 56899999
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHH
Q 006763 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSH 161 (632)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~ 161 (632)
-.+.+-+-|.|.++-|||+|++.+..+...+ .++-.|.+..+..+|.|.++.+..-|=..+.|+..+. ..++.+.+.
T Consensus 999 ~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPd 1075 (1251)
T KOG0414|consen 999 WTEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPD 1075 (1251)
T ss_pred hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchH
Confidence 9999999999999999999999999887654 4443478889999999999999988888899998765 445566555
Q ss_pred HHHHH
Q 006763 162 TLSKL 166 (632)
Q Consensus 162 ~~~~L 166 (632)
.+.+|
T Consensus 1076 il~~L 1080 (1251)
T KOG0414|consen 1076 ILSRL 1080 (1251)
T ss_pred HHHhh
Confidence 55444
No 57
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.52 E-value=0.091 Score=58.30 Aligned_cols=311 Identities=14% Similarity=0.158 Sum_probs=159.6
Q ss_pred CCCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCC----hHHHhHH------------
Q 006763 3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPN----PLIRALA------------ 66 (632)
Q Consensus 3 lG~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~n----p~ir~lA------------ 66 (632)
.|||.....--+...+.|+|-+.||..-++...+.+...+-. -..+|=-++. ...|-.|
T Consensus 435 a~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp-----~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~t 509 (975)
T COG5181 435 ACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTP-----WKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLT 509 (975)
T ss_pred hhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCH-----HHHHHhhcHHhhchHHHhhhcccccccceeehh
Confidence 355655555555668999999999999999999987654421 1111111110 1122222
Q ss_pred HHHhcCC-CchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccccccc----chHHHHHHHhcCCCh--hHHHH
Q 006763 67 VRTMGCI-RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDR----GFLESLKDLISDNNP--MVVAN 139 (632)
Q Consensus 67 Lr~L~~I-~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~----~~~~~L~~lL~D~d~--~Vv~~ 139 (632)
--+++.. +.+ ++..-|..-++|...--||-++-++.|++..-+..--++ .+.+.+...+.+++. +++..
T Consensus 510 tvilAk~~g~~----~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~ 585 (975)
T COG5181 510 TVILAKMGGDP----RVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILP 585 (975)
T ss_pred HHHHHHHcCCh----HHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEe
Confidence 2223322 233 445557777888666669999999999997655332111 233334444444332 22222
Q ss_pred HHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhcccc-----CCHHHHHHHHHHHHHhhcCCCHHH
Q 006763 140 AVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKA-----ADAREAENIVERVTPRLQHANCAV 214 (632)
Q Consensus 140 Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~-----~~~~~~~~il~~v~~~L~~~n~aV 214 (632)
++.+..--..-.++ ......+..+|+.|+...|-..+.-.++...+.+ .+.++...+=+.+-..|....+-|
T Consensus 586 ~f~tv~vsl~~r~k---p~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEv 662 (975)
T COG5181 586 CFSTVLVSLEFRGK---PHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEV 662 (975)
T ss_pred cccceeeehhhccC---cchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHH
Confidence 22221110001122 2234456677777777777666555555443322 122233333333344455555544
Q ss_pred H---HHHHHHHHHhhhccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCch
Q 006763 215 V---LSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPI 290 (632)
Q Consensus 215 v---~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~ 290 (632)
+ +.|+.+|......-+-..-++ .+.+.|.-+| +++.-+.--.+.-+..|+...|+.+
T Consensus 663 Lgsil~Ai~~I~sv~~~~~mqpPi~----~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi--------------- 723 (975)
T COG5181 663 LGSILKAICSIYSVHRFRSMQPPIS----GILPSLTPILRNKHQKVVANTIALVGTICMNSPEYI--------------- 723 (975)
T ss_pred HHHHHHHHHHHhhhhcccccCCchh----hccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccC---------------
Confidence 4 444444443211000000011 2344444444 4455555555566666666655432
Q ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 006763 291 YVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 360 (632)
Q Consensus 291 ~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~ 360 (632)
...-|-.|.=||.+-+...+.+++|.+....|-++.-..+ ...+++|++-|+..
T Consensus 724 --------------~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP--qdvL~~LlnnLkvq 777 (975)
T COG5181 724 --------------GVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP--QDVLDILLNNLKVQ 777 (975)
T ss_pred --------------CHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH--HHHHHHHHhcchHH
Confidence 1223555666666667677777777777777777766543 45666666666543
No 58
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.41 E-value=0.00051 Score=60.61 Aligned_cols=70 Identities=24% Similarity=0.281 Sum_probs=59.4
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccccc---ccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcC
Q 006763 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE---DRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (632)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~---~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~ 151 (632)
+++.+.+.+.+.++.+|+.|+.|+..+...+|+... +.+.++.+.++|.|.|+.|+.+|+.+|..++...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 677788899999999999999999999876554332 2367899999999999999999999999998654
No 59
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.39 E-value=0.0094 Score=63.33 Aligned_cols=184 Identities=20% Similarity=0.211 Sum_probs=119.2
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhh
Q 006763 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRC 89 (632)
Q Consensus 10 lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~ 89 (632)
....+++.+.+++..+|.-+..++..+. ..-++..+.+-+.|.++.+|..|...++.+..++-++.++..+..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~- 116 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELG------SEEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN- 116 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhc------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc-
Confidence 3455667778888888887777755543 234678889999999999999999999999999988886666665
Q ss_pred hCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCCh------------hHHHHHHHHHHHHHhcCCCCchh
Q 006763 90 LKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNP------------MVVANAVAALAEIEENSSRPIFE 157 (632)
Q Consensus 90 L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~------------~Vv~~Al~aL~eI~~~~~~~~~~ 157 (632)
|.+.+||++|+.++.++.... -+..+..+++|.+. .+..+++.++..+....
T Consensus 117 --d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~------ 180 (335)
T COG1413 117 --DENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPE------ 180 (335)
T ss_pred --CCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChh------
Confidence 899999999999999886543 23556666666553 35555555555543221
Q ss_pred ccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 006763 158 ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQ 224 (632)
Q Consensus 158 l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~ 224 (632)
....+...+.+...-.+......|......+ ..+...+...+++.+..|...++..+..
T Consensus 181 ----~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 181 ----AIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLALGE 239 (335)
T ss_pred ----hhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 1222333333333333333333333333221 2333455566777788888888777664
No 60
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.072 Score=58.61 Aligned_cols=390 Identities=14% Similarity=0.189 Sum_probs=215.4
Q ss_pred hhcCCCChHHHhHHHHHhcCCCchhh-----------------------HHHHHHHHHhhhCC-------CChHHHHHHH
Q 006763 53 KDSQDPNPLIRALAVRTMGCIRVDKI-----------------------TEYLCDPLQRCLKD-------DDPYVRKTAA 102 (632)
Q Consensus 53 kDl~~~np~ir~lALr~L~~I~~~ei-----------------------~~~l~~~v~~~L~d-------~~pyVRK~A~ 102 (632)
+-+.++|..|...|+.+-+.|..+++ +.+++|.+.++|.. .++.+-+.|.
T Consensus 270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~ 349 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS 349 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence 45678888888888888877765543 33467777777753 5566777777
Q ss_pred HHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCC-chhccHHHHHHHHHHhhcc-------C
Q 006763 103 ICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNEC-------T 174 (632)
Q Consensus 103 ~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~-~~~l~~~~~~~Ll~~l~~~-------~ 174 (632)
-|+--+-+...+.+-++ ....+.+=+...|-.=.-+|+.+|..+....+.. +-.+.+..++.+++..++. +
T Consensus 350 sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~tt 428 (858)
T COG5215 350 SCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTT 428 (858)
T ss_pred HHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHH
Confidence 77665555655655432 4455666666666556667788888876544332 2345566667777766654 3
Q ss_pred hhhHHHHHHHHhccc-cCCHHHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHhhhccCC-----hHHHHHHHHhcccch
Q 006763 175 EWGQVFILDALSRYK-AADAREAENIVERVTPRLQ--HANCAVVLSAVKMILQQMELITS-----TDVVRNLCKKMAPPL 246 (632)
Q Consensus 175 ew~qi~lL~lL~~y~-~~~~~~~~~il~~v~~~L~--~~n~aVv~eaik~i~~~~~~i~~-----~~~~~~~~~~~~~~L 246 (632)
.|.--.|-+.+.... |.. .+.-.+..++. .-++-+...|.+.+..+..++.. ++.+..++..+...|
T Consensus 429 Awc~g~iad~va~~i~p~~-----Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L 503 (858)
T COG5215 429 AWCFGAIADHVAMIISPCG-----HLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL 503 (858)
T ss_pred HHHHHHHHHHHHHhcCccc-----cccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence 454333333332211 110 00001111111 12456667777777666554421 222223333344444
Q ss_pred hhh---ccCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHh-----cCcccHHHHHHHHHH
Q 006763 247 VTL---LSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKL-----ASDRNIDQVLLEFKE 318 (632)
Q Consensus 247 ~~L---ls~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L-----~n~~Ni~~Iv~EL~~ 318 (632)
+.- .-++.|.|-.+...|..++...|+.+.+-..-|+ ++-.+||+--..+ +.++- ..++
T Consensus 504 v~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~-------~~~~~kl~~~isv~~q~l~~eD~--~~~~---- 570 (858)
T COG5215 504 VKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFY-------DYTSKKLDECISVLGQILATEDQ--LLVE---- 570 (858)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHH-------HHHHHHHHHHHHHhhhhhhhHHH--HHHH----
Confidence 332 2367899999999999998888877655433221 1222333221111 11110 1122
Q ss_pred hhhhcCHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHhhhch-hhHHHHHHHHHHHHhhCcccHH----HHHHH
Q 006763 319 YATEVDVDFVRKAVRAIGRCAIKLER----AAERCISVLLELIKIKVN-YVVQEAIIVIKDIFRRYPNTYE----SIIAT 389 (632)
Q Consensus 319 yl~~~d~~~~~~~i~aIg~la~k~~~----~~~~~v~~Ll~ll~~~~~-~v~~e~i~~l~~ilr~~p~~~~----~ii~~ 389 (632)
++....+.-+..+..++++ ..+..+..++.+++...+ .+..++...|..+...-.+.++ +.++.
T Consensus 571 -------elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPy 643 (858)
T COG5215 571 -------ELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPY 643 (858)
T ss_pred -------HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3334444455555555544 455677777777877743 4556666666666553333333 34555
Q ss_pred HHHhhccCChhhHHHHHHHHHhcccCccCC-----HHHHHHHHhhhCCCC--CHHHHHHHHHHHHHHhhcCCCC--ChHH
Q 006763 390 LCESLDTLDEPEAKASMIWIIGEYAERIDN-----ADELLESFLESFPEE--PAQVQLQLLTATVKLFLKKPTE--GPQQ 460 (632)
Q Consensus 390 L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~-----~~~~l~~l~~~f~~e--~~~vq~~iLta~~Kl~~~~p~e--~~~~ 460 (632)
|...+ ..++..+..+++-++|..++.... +..+...+++.+..+ +-++|-.+|+...-++...... ..-+
T Consensus 644 l~~al-n~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~ 722 (858)
T COG5215 644 LTRAL-NCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLD 722 (858)
T ss_pred HHHHh-cchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHH
Confidence 55555 334555677788888887765432 445566666666554 4568888898888887654332 1234
Q ss_pred HHHHHHHhh
Q 006763 461 MIQVVLNNA 469 (632)
Q Consensus 461 ~v~~ll~~~ 469 (632)
++.-+++.+
T Consensus 723 ~im~L~qqa 731 (858)
T COG5215 723 MIMMLFQQA 731 (858)
T ss_pred HHHHHHHHH
Confidence 555555544
No 61
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.022 Score=64.75 Aligned_cols=171 Identities=16% Similarity=0.197 Sum_probs=117.3
Q ss_pred HHHHHhhcCCCChHHHhHHH-HHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHH
Q 006763 48 VNTFVKDSQDPNPLIRALAV-RTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (632)
Q Consensus 48 iNtl~kDl~~~np~ir~lAL-r~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~ 126 (632)
+..+++.+.+.-+.-|..|+ ++++.+....=+-.+.+++.++..-.+--++|-..+-+...-...|+... ..++.+.
T Consensus 15 i~elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~--~avnt~~ 92 (734)
T KOG1061|consen 15 IPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI--LAVNTFL 92 (734)
T ss_pred chHHHHHhhhhhhhhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH--hhhhhhh
Confidence 34456666655555555554 56777766666678899999999988866667666666666667787665 2445555
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHH--HHHHHHHHHH
Q 006763 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAR--EAENIVERVT 204 (632)
Q Consensus 127 ~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~--~~~~il~~v~ 204 (632)
+=..|.||.+.+.|+..+..+.-. .+......-|.+.+++-++..+...--...++...+.+ +...+++.+.
T Consensus 93 kD~~d~np~iR~lAlrtm~~l~v~------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~ 166 (734)
T KOG1061|consen 93 KDCEDPNPLIRALALRTMGCLRVD------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALK 166 (734)
T ss_pred ccCCCCCHHHHHHHhhceeeEeeh------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHH
Confidence 555689999999998887766321 23333455667777788888877766666665544332 2345777777
Q ss_pred HhhcCCCHHHHHHHHHHHHHhh
Q 006763 205 PRLQHANCAVVLSAVKMILQQM 226 (632)
Q Consensus 205 ~~L~~~n~aVv~eaik~i~~~~ 226 (632)
..+...|+.|+-.|+.++..+.
T Consensus 167 ~ll~D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 167 DLLSDSNPMVVANALAALSEIH 188 (734)
T ss_pred HHhcCCCchHHHHHHHHHHHHH
Confidence 8888999999999988877654
No 62
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.33 E-value=0.02 Score=62.48 Aligned_cols=249 Identities=17% Similarity=0.080 Sum_probs=157.2
Q ss_pred HHHhcCCCchhhHHHHHHHHHhhh-CCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHH
Q 006763 67 VRTMGCIRVDKITEYLCDPLQRCL-KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALA 145 (632)
Q Consensus 67 Lr~L~~I~~~ei~~~l~~~v~~~L-~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~ 145 (632)
|..|.-++ +. ..+.+...+ .+.++-|+..|+.++... +.. ..++.+...|.|.++.|..++..+|.
T Consensus 45 LdgL~~~G-~~----a~~~L~~aL~~d~~~ev~~~aa~al~~~---~~~-----~~~~~L~~~L~d~~~~vr~aaa~ALg 111 (410)
T TIGR02270 45 VDGLVLAG-KA----ATELLVSALAEADEPGRVACAALALLAQ---EDA-----LDLRSVLAVLQAGPEGLCAGIQAALG 111 (410)
T ss_pred HHHHHHhh-Hh----HHHHHHHHHhhCCChhHHHHHHHHHhcc---CCh-----HHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 44444444 33 344455666 478888888877776532 111 13678888999999999999999998
Q ss_pred HHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006763 146 EIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (632)
Q Consensus 146 eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~ 225 (632)
+|... .....|+..+.+.+++.+..++..+...... -.+.+.+.|++.++.|.-+|++++..+
T Consensus 112 ~i~~~----------~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-------~~~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 112 WLGGR----------QAEPWLEPLLAASEPPGRAIGLAALGAHRHD-------PGPALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred cCCch----------HHHHHHHHHhcCCChHHHHHHHHHHHhhccC-------hHHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 77432 2345567777888999998888888764432 134566788999999999999999864
Q ss_pred hhccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHhc
Q 006763 226 MELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLA 304 (632)
Q Consensus 226 ~~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~ 304 (632)
...+.. +.|...+ +.++++|..++..+..+.. +.....-. -|+ .....+.+.....++-...
T Consensus 175 ----~~~~a~--------~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~~l~-~~~--~~~g~~~~~~l~~~lal~~ 237 (410)
T TIGR02270 175 ----PRRLSE--------STLRLYLRDSDPEVRFAALEAGLLAGS--RLAWGVCR-RFQ--VLEGGPHRQRLLVLLAVAG 237 (410)
T ss_pred ----ccccch--------HHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHHHHH-HHH--hccCccHHHHHHHHHHhCC
Confidence 233322 2233445 5789999999999977743 33221111 011 1223344444444433332
Q ss_pred CcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 006763 305 SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIF 376 (632)
Q Consensus 305 n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~il 376 (632)
++ .++.-|.+.+++.+ .++.++.++|.+.. ...+..|++.+.. +++..-+-..+..|.
T Consensus 238 ~~----~a~~~L~~ll~d~~--vr~~a~~AlG~lg~------p~av~~L~~~l~d--~~~aR~A~eA~~~It 295 (410)
T TIGR02270 238 GP----DAQAWLRELLQAAA--TRREALRAVGLVGD------VEAAPWCLEAMRE--PPWARLAGEAFSLIT 295 (410)
T ss_pred ch----hHHHHHHHHhcChh--hHHHHHHHHHHcCC------cchHHHHHHHhcC--cHHHHHHHHHHHHhh
Confidence 32 66777777777643 78889999998874 2456666666654 335555555555554
No 63
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.30 E-value=0.059 Score=58.85 Aligned_cols=283 Identities=16% Similarity=0.137 Sum_probs=158.5
Q ss_pred HHHHHHHhhccChhhHHHHHHHHhccc---cCCH--HHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhccCChHHHH
Q 006763 163 LSKLLTALNECTEWGQVFILDALSRYK---AADA--REAENIVERVTPRLQHA-NCAVVLSAVKMILQQMELITSTDVVR 236 (632)
Q Consensus 163 ~~~Ll~~l~~~~ew~qi~lL~lL~~y~---~~~~--~~~~~il~~v~~~L~~~-n~aVv~eaik~i~~~~~~i~~~~~~~ 236 (632)
+..++..+...+.+.+.....+|+.+. +.+. .....+.+.+...+++. +..-+.-|++++..++. .++...
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~---~~~~R~ 179 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR---VDEYRF 179 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC---CchHHH
Confidence 344555555556677777666666553 3221 22233455555666543 34555555666554432 233332
Q ss_pred HHH-HhcccchhhhccC---chhHHHHHHHHHHHHHhhCc--cchhcc--cc-eeEeccCCc-hhHHHHHHHHHHHhcCc
Q 006763 237 NLC-KKMAPPLVTLLSA---EPEIQYVALRNINLIVQRRP--TILAHE--IK-VFFCKYNDP-IYVKMEKLEIMIKLASD 306 (632)
Q Consensus 237 ~~~-~~~~~~L~~Lls~---~~niryvaL~~l~~i~~~~p--~~~~~~--~~-~f~~l~~dd-~~Ik~~kL~lL~~L~n~ 306 (632)
.+. .+..++|..++++ ...++|-++-++..+.-..+ ..+..+ +. ...+....+ .-|=|.++.+|.++.+.
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 222 2345566777753 45899999999988875432 111111 01 011222222 45666777888888874
Q ss_pred c-------c-HHHHHH-HHHHhh------hhcCHHHHHHHHHHHHHHHHhhh--hhHHHHHHH-HHHHHhhhchhhHHHH
Q 006763 307 R-------N-IDQVLL-EFKEYA------TEVDVDFVRKAVRAIGRCAIKLE--RAAERCISV-LLELIKIKVNYVVQEA 368 (632)
Q Consensus 307 ~-------N-i~~Iv~-EL~~yl------~~~d~~~~~~~i~aIg~la~k~~--~~~~~~v~~-Ll~ll~~~~~~v~~e~ 368 (632)
. + ...++. .+...+ .-.|+++..++-.--..+.+++. +..+.|..- ....|+-+..|-++..
T Consensus 260 ~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~F 339 (429)
T cd00256 260 RVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKF 339 (429)
T ss_pred ccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchH
Confidence 3 1 123333 222222 22577776554333333333322 233444432 2333444444555666
Q ss_pred HH-HHHHHHhhCcccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCccCCHHHHHHHH------hhhCCCCCHHHHHH
Q 006763 369 II-VIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESF------LESFPEEPAQVQLQ 441 (632)
Q Consensus 369 i~-~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~~~~~l~~l------~~~f~~e~~~vq~~ 441 (632)
|. ...++-.+ --.++..|++.++.-++|...+.++.=||||..+.+....+++.+ .+-...++++||..
T Consensus 340 W~EN~~kf~~~----~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~e 415 (429)
T cd00256 340 WRENADRLNEK----NYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYE 415 (429)
T ss_pred HHHHHHHHHhc----chHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHH
Confidence 64 34443222 135788899988766788889999999999999888776666543 33445789999999
Q ss_pred HHHHHHHHhhc
Q 006763 442 LLTATVKLFLK 452 (632)
Q Consensus 442 iLta~~Kl~~~ 452 (632)
.|.|+-|+...
T Consensus 416 AL~avQklm~~ 426 (429)
T cd00256 416 ALLAVQKLMVH 426 (429)
T ss_pred HHHHHHHHHHh
Confidence 99999998653
No 64
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.33 Score=54.25 Aligned_cols=300 Identities=16% Similarity=0.186 Sum_probs=181.9
Q ss_pred HHHHHHHHhhcCCCChHHHhHHHHHhcCCCc---hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcc-ccccccc
Q 006763 45 ILAVNTFVKDSQDPNPLIRALAVRTMGCIRV---DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDRG 120 (632)
Q Consensus 45 lL~iNtl~kDl~~~np~ir~lALr~L~~I~~---~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p-~~v~~~~ 120 (632)
.-++-.+..-+.-|.+.+|-.-..++..+.. ..-.+++.+.+.+++...+--=|+.|+.++..+.+-.. +..++.+
T Consensus 95 ~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~ 174 (569)
T KOG1242|consen 95 ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFG 174 (569)
T ss_pred hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhh
Confidence 3344556666777888888776666665542 23345677788899998888889999999999887655 4455568
Q ss_pred hHHHHHHHhcCCChhHHH-HHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChh-------hHHHHHHHHhccccCC
Q 006763 121 FLESLKDLISDNNPMVVA-NAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEW-------GQVFILDALSRYKAAD 192 (632)
Q Consensus 121 ~~~~L~~lL~D~d~~Vv~-~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew-------~qi~lL~lL~~y~~~~ 192 (632)
|++.+.+.+.|++..-.. .+..++...+.+-+...-.-+.+.+..++....+..+- .-..+++.+.-|.-.
T Consensus 175 ~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK- 253 (569)
T KOG1242|consen 175 FLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK- 253 (569)
T ss_pred HHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh-
Confidence 899999999998866554 23333333333333222233445666777666544332 233455555444321
Q ss_pred HHHHHHHHHHHHH-hhcC--CCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHH
Q 006763 193 AREAENIVERVTP-RLQH--ANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIV 268 (632)
Q Consensus 193 ~~~~~~il~~v~~-~L~~--~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~ 268 (632)
.++..++. .... .......+.+.++..+ .+..+......+++.+...| .+.|++|-.+..+|..+.
T Consensus 254 -----~llpsll~~l~~~kWrtK~aslellg~m~~~-----ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~ 323 (569)
T KOG1242|consen 254 -----LLLPSLLGSLLEAKWRTKMASLELLGAMADC-----APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFG 323 (569)
T ss_pred -----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh-----chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 22222111 1111 2334455555655554 34556666667777777655 689999999999999887
Q ss_pred hh--Cccchhcccc-eeEeccCCchhHHHHHHHHHHHh-----cCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHH
Q 006763 269 QR--RPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKL-----ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAI 340 (632)
Q Consensus 269 ~~--~p~~~~~~~~-~f~~l~~dd~~Ik~~kL~lL~~L-----~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~ 340 (632)
.. +|+ +++++. .+.|+.+...++ ...++.|... +++.....++.=|..=+.+.+.+.+|+++..++.++.
T Consensus 324 svidN~d-I~~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 324 SVIDNPD-IQKIIPTLLDALADPSCYT-PECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred HhhccHH-HHHHHHHHHHHhcCcccch-HHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 64 344 555554 345663333133 2455555543 3555566666666666677788888999999998887
Q ss_pred hh--hhhHHHHHHHHHHHH
Q 006763 341 KL--ERAAERCISVLLELI 357 (632)
Q Consensus 341 k~--~~~~~~~v~~Ll~ll 357 (632)
-. +.+...++..|+.=+
T Consensus 402 LveDp~~lapfl~~Llp~l 420 (569)
T KOG1242|consen 402 LVEDPKDLAPFLPSLLPGL 420 (569)
T ss_pred hhcCHHHHhhhHHHHhhHH
Confidence 66 334444444444433
No 65
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.1 Score=58.44 Aligned_cols=382 Identities=16% Similarity=0.151 Sum_probs=219.9
Q ss_pred CCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHh-cCCChhHHHHHHHHHHHHHhcCCCC--chhccHHHHHHHH
Q 006763 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI-SDNNPMVVANAVAALAEIEENSSRP--IFEITSHTLSKLL 167 (632)
Q Consensus 91 ~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL-~D~d~~Vv~~Al~aL~eI~~~~~~~--~~~l~~~~~~~Ll 167 (632)
.|+++-+|||-+.-...+ ..+++--....+.+.-.-.+ .+.+..|++.-+..+..+....+.. ...+.+.....-.
T Consensus 89 fDs~~s~~~K~~~l~~~l-~~~~~~~s~d~I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~~~ 167 (823)
T KOG2259|consen 89 FDSDESSRKKLAILLGIL-EADFENGSTDAISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKVRS 167 (823)
T ss_pred ccccchhhhHHHHHhhHh-hhhhccCchhHHHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHHhh
Confidence 468888888776655555 33333222111222222222 3567778777776666654333221 1111111111111
Q ss_pred HHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchh
Q 006763 168 TALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLV 247 (632)
Q Consensus 168 ~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~ 247 (632)
+.....+--.+...+-.|......-+.+.+.....+.......++.|.-.|++.++.+.+. -.+.+.+++++ +
T Consensus 168 ~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg---~kL~~~~Y~~A----~ 240 (823)
T KOG2259|consen 168 SISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG---FKLSKACYSRA----V 240 (823)
T ss_pred hcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc---ccccHHHHHHH----H
Confidence 1111122233333333333333332334444555555666777889999999999886432 22233333333 4
Q ss_pred hhccC-chhHHHHHHHHHHHHHhhCccch---hcc---cc-ee--Ee--ccCCchhHHHHHHHHHHHhcC--cccHHHHH
Q 006763 248 TLLSA-EPEIQYVALRNINLIVQRRPTIL---AHE---IK-VF--FC--KYNDPIYVKMEKLEIMIKLAS--DRNIDQVL 313 (632)
Q Consensus 248 ~Lls~-~~niryvaL~~l~~i~~~~p~~~---~~~---~~-~f--~~--l~~dd~~Ik~~kL~lL~~L~n--~~Ni~~Iv 313 (632)
++++. +..+|-.|++.+....+++|--. ... +. .| .| ..|-...||-.|-..|-.+.+ ++=+.+.+
T Consensus 241 ~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTL 320 (823)
T KOG2259|consen 241 KHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTL 320 (823)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHH
Confidence 67764 56899999999999999986222 111 11 23 14 334456778877777765543 22222222
Q ss_pred H-HHHH---------------hhhh------------------------------------cC---HHHHHHHHHHHHHH
Q 006763 314 L-EFKE---------------YATE------------------------------------VD---VDFVRKAVRAIGRC 338 (632)
Q Consensus 314 ~-EL~~---------------yl~~------------------------------------~d---~~~~~~~i~aIg~l 338 (632)
+ ++.. |.+- .. .++++.+|.+++.+
T Consensus 321 dKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~L 400 (823)
T KOG2259|consen 321 DKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSL 400 (823)
T ss_pred HHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHH
Confidence 1 1111 0000 01 34788999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCccC
Q 006763 339 AIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID 418 (632)
Q Consensus 339 a~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~ 418 (632)
|..-|..+..++++|++++.+....|.-.++..+..|..+ -..++..+..+++.|++- .++++.++--+++----...
T Consensus 401 a~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-l~i~eeql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~ 478 (823)
T KOG2259|consen 401 ATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH-LAIREEQLRQILESLEDR-SVDVREALRELLKNARVSDL 478 (823)
T ss_pred HcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-heecHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcH
Confidence 9999999999999999999999999999999999888755 567788888888888874 56788888777764211111
Q ss_pred CH-HHHHHHHhh---hCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh-hhcCCCChHHHhhHHHHHH
Q 006763 419 NA-DELLESFLE---SFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN-ATVETDNPDLRDRAYIYWR 487 (632)
Q Consensus 419 ~~-~~~l~~l~~---~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~-~~~~s~~~dvrdRA~~y~~ 487 (632)
+. .-.+..+++ .|+. -|-.++.|..|+.-+.+-- ...++.+++.. -+-....+++-|++|.-.=
T Consensus 479 ~~i~m~v~~lL~~L~kyPq----Drd~i~~cm~~iGqnH~~l-v~s~m~rfl~kh~~f~t~e~s~ed~~y~akL 547 (823)
T KOG2259|consen 479 ECIDMCVAHLLKNLGKYPQ----DRDEILRCMGRIGQNHRRL-VLSNMGRFLEKHTSFATIEPSLEDGFYIAKL 547 (823)
T ss_pred HHHHHHHHHHHHHhhhCCC----CcHHHHHHHHHHhccChhh-HHHHHHHHHHhcccccccCccccChhhhhhh
Confidence 11 112233333 3433 2345778888887766653 66777777732 2234456778887765443
No 66
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.27 E-value=0.0007 Score=59.74 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=80.4
Q ss_pred HHHHHHhhcCCCChHHHhHHHHHhcCCCc--h----hhHH-HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccc---c
Q 006763 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRV--D----KITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---V 116 (632)
Q Consensus 47 ~iNtl~kDl~~~np~ir~lALr~L~~I~~--~----ei~~-~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~---v 116 (632)
+++.+.+=+.++|+.+|..|+.+++++.. + .+.+ .+++.+.+++.|+++.||+.|+.++..+....++. +
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 45566666777788899999999888864 2 3333 56678889999999999999999999998766432 2
Q ss_pred cccchHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 006763 117 EDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (632)
Q Consensus 117 ~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~ 148 (632)
...++++.+.+++.+.+..+...|+.+|..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33468899999999999999999998887764
No 67
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.27 E-value=0.31 Score=56.52 Aligned_cols=170 Identities=11% Similarity=0.136 Sum_probs=113.8
Q ss_pred HHHHHhh-cCCCChHHHhHHHHHhcC-CCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHH
Q 006763 48 VNTFVKD-SQDPNPLIRALAVRTMGC-IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (632)
Q Consensus 48 iNtl~kD-l~~~np~ir~lALr~L~~-I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L 125 (632)
+-+++.. +.+.|..-|--|+|.+=. +..-+=...+.+.|.|.....+.-+||--.+-+.++-+.+|+..-- -++.+
T Consensus 20 ~~~~~sg~l~s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL--avNti 97 (757)
T COG5096 20 VAALSSGRLESSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL--AVNTI 97 (757)
T ss_pred HhhhccccccccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH--HHHHH
Confidence 3445555 999999888888876533 3322336677788888888999999998888888888888866542 45777
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHH-HH-HHHHH
Q 006763 126 KDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA-EN-IVERV 203 (632)
Q Consensus 126 ~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~-~~-il~~v 203 (632)
.+=+.|+|+.+.+.|+..+..+... .+....+.-+.+.+.+.++.-.-...-.+.++-.-+.+.. +. .+...
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~~~------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l 171 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLRVK------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDIL 171 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcChH------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHH
Confidence 7778899999999999999887432 2223334444455667777654444333333322222221 22 34445
Q ss_pred HHhhcCCCHHHHHHHHHHHHHh
Q 006763 204 TPRLQHANCAVVLSAVKMILQQ 225 (632)
Q Consensus 204 ~~~L~~~n~aVv~eaik~i~~~ 225 (632)
..++...+|-|+-+|..++..+
T Consensus 172 ~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 172 KELVADSDPIVIANALASLAEI 193 (757)
T ss_pred HHHhhCCCchHHHHHHHHHHHh
Confidence 5677889999999998888765
No 68
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.22 E-value=0.0047 Score=61.84 Aligned_cols=184 Identities=20% Similarity=0.179 Sum_probs=112.5
Q ss_pred hhCCCChHHHHHHHHHHHHhhhhc--cccccccchHH-------HHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhcc
Q 006763 89 CLKDDDPYVRKTAAICVAKLYDIN--AELVEDRGFLE-------SLKDLISDNNPMVVANAVAALAEIEENSSRPIFEIT 159 (632)
Q Consensus 89 ~L~d~~pyVRK~A~~al~kl~~~~--p~~v~~~~~~~-------~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~ 159 (632)
.-.+.++-.|..|+.-+-++...+ .+..+ .+.+ .+...+.|....|+.+|+.++.++...-+...-...
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~ 92 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPP--DFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA 92 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----H--HHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHH--HHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 347799999999999999998877 22222 2433 444677788889999999999998876544322344
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHH-HHHHHHhhcCCCHHHHHHHHHHHHHhhhccC--ChHHH-
Q 006763 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-VERVTPRLQHANCAVVLSAVKMILQQMELIT--STDVV- 235 (632)
Q Consensus 160 ~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~i-l~~v~~~L~~~n~aVv~eaik~i~~~~~~i~--~~~~~- 235 (632)
...+..|++.+.+.+.+......+.|..+...-. -...+ ...+....+|.|+.|..+|+..+..+....+ .+..-
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 4566778888888888877666565554443322 11233 6666678899999999999999888765443 11111
Q ss_pred HHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCccch
Q 006763 236 RNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTIL 275 (632)
Q Consensus 236 ~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~~~ 275 (632)
......+.+.+..+++ .++++|..+-+.+..+.+..|+-.
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 1122345666677775 689999999999999988777543
No 69
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.21 E-value=0.53 Score=56.16 Aligned_cols=148 Identities=16% Similarity=0.236 Sum_probs=113.3
Q ss_pred CCCcchhHHHHHhhcCC-----CcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCch---
Q 006763 5 KDVSSLFTDVVNCMQTE-----NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD--- 76 (632)
Q Consensus 5 ~Dvs~lf~~vi~l~~s~-----d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~--- 76 (632)
|....++-.+++-+.+. |-...|.+=.++..++..-|-+++=-.+.|.+=+.+.+..+|..-+..++++...
T Consensus 266 y~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~ 345 (1251)
T KOG0414|consen 266 YGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELR 345 (1251)
T ss_pred cccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhc
Confidence 34566778888876654 5556888889999999999998888888888877888889999888888886332
Q ss_pred ---------hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccc-cchHHHHHHHhcCCChhHHHHHHHHHHH
Q 006763 77 ---------KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED-RGFLESLKDLISDNNPMVVANAVAALAE 146 (632)
Q Consensus 77 ---------ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~-~~~~~~L~~lL~D~d~~Vv~~Al~aL~e 146 (632)
++-..+...+.+-+.|.++|||-++.....|+++....-... ..++......|.|++..|..+|+..+..
T Consensus 346 d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~ 425 (1251)
T KOG0414|consen 346 DEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSS 425 (1251)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 222247778888999999999999999999999875443331 1233444456789999999999999998
Q ss_pred HHhcCC
Q 006763 147 IEENSS 152 (632)
Q Consensus 147 I~~~~~ 152 (632)
+..+.|
T Consensus 426 ~L~~~P 431 (1251)
T KOG0414|consen 426 LLDRHP 431 (1251)
T ss_pred HHhcCC
Confidence 887765
No 70
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.21 E-value=0.12 Score=58.58 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=14.7
Q ss_pred CChHHHhhHHHHHHHhcCCHHHHHhhhccC
Q 006763 474 DNPDLRDRAYIYWRLLSTDPEAAKDVVLAE 503 (632)
Q Consensus 474 ~~~dvrdRA~~y~~LL~~~~~~~~~ivl~~ 503 (632)
+|...|. .|+.|+. +-..+||+-.
T Consensus 416 nDy~~rp---qYykLIE---ecISqIvlHr 439 (1102)
T KOG1924|consen 416 NDYYIRP---QYYKLIE---ECISQIVLHR 439 (1102)
T ss_pred hhhhhhH---HHHHHHH---HHHHHHHHhc
Confidence 4666665 5777775 4456666643
No 71
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.17 E-value=0.002 Score=53.95 Aligned_cols=83 Identities=29% Similarity=0.381 Sum_probs=58.8
Q ss_pred HHHHhhh-CCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHH
Q 006763 84 DPLQRCL-KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (632)
Q Consensus 84 ~~v~~~L-~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~ 162 (632)
+.+.+.+ +|++++||..|+.++.++.. ...++.|..+++|.|+.|..+|+.+|..+... ..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~----------~~ 63 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIGDP----------EA 63 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHH----------HT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH----------HH
Confidence 5566767 89999999999999995431 24678899999999999999999999887532 23
Q ss_pred HHHHHHHhhccChhh-HHHHHHH
Q 006763 163 LSKLLTALNECTEWG-QVFILDA 184 (632)
Q Consensus 163 ~~~Ll~~l~~~~ew~-qi~lL~l 184 (632)
+..|.+.+.+.+.|. +...++.
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~a 86 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEA 86 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhh
Confidence 445555555544443 4444433
No 72
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.37 Score=58.77 Aligned_cols=369 Identities=13% Similarity=0.111 Sum_probs=195.3
Q ss_pred HHHHHHHhhhCC-CChHHHHHHHHHHHHhhhhccccccc--cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchh
Q 006763 81 YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE 157 (632)
Q Consensus 81 ~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~~~p~~v~~--~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~ 157 (632)
+++---.++.+| ..+.=||-||+++..+....-+..+. ..++++|++-=-|.|+.|..+.......+..++. .
T Consensus 956 dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k----~ 1031 (1702)
T KOG0915|consen 956 DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSK----K 1031 (1702)
T ss_pred HHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChH----H
Confidence 334445566666 66777999999999999877665553 1455666666679999998877666666554321 1
Q ss_pred ccHHHHHHHHHHhh---ccChhh-----HHHHHHHHhccccCCHHHHHHHHHH---HHHhhcCCCHHHHHHHHHH---HH
Q 006763 158 ITSHTLSKLLTALN---ECTEWG-----QVFILDALSRYKAADAREAENIVER---VTPRLQHANCAVVLSAVKM---IL 223 (632)
Q Consensus 158 l~~~~~~~Ll~~l~---~~~ew~-----qi~lL~lL~~y~~~~~~~~~~il~~---v~~~L~~~n~aVv~eaik~---i~ 223 (632)
.+...+..+++.|- .+.+|- ...+.++|+. +...+..+++.+. +.......-.+|.-.+-++ +.
T Consensus 1032 ~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g--~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~ls 1109 (1702)
T KOG0915|consen 1032 VVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG--RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALS 1109 (1702)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223334443332 367884 3345666654 2222333333222 2222233333444443222 22
Q ss_pred Hhhh---ccCChHHHHHHHHhcccchhh--hccCchhHHHHHHHHHHHHHhhCccchhcccce-eEeccCCchhHHHHHH
Q 006763 224 QQME---LITSTDVVRNLCKKMAPPLVT--LLSAEPEIQYVALRNINLIVQRRPTILAHEIKV-FFCKYNDPIYVKMEKL 297 (632)
Q Consensus 224 ~~~~---~i~~~~~~~~~~~~~~~~L~~--Lls~~~niryvaL~~l~~i~~~~p~~~~~~~~~-f~~l~~dd~~Ik~~kL 297 (632)
++.- ...+...-++++..+.+.|.. .+++=+++|-+.+.++..|+...+..+++|... +.|+
T Consensus 1110 Kl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~l------------ 1177 (1702)
T KOG0915|consen 1110 KLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLL------------ 1177 (1702)
T ss_pred HHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHH------------
Confidence 2110 111222233343444444331 345678999999999999999999888887642 1121
Q ss_pred HHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHh
Q 006763 298 EIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (632)
Q Consensus 298 ~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr 377 (632)
.. +-..+-..+ +.|+...-.....+++.....=+-|-. -..+++-+++..-+..+-.|.+-.+.+++|
T Consensus 1178 ---l~-~~s~lE~~v----LnYls~r~~~~e~ealDt~R~s~akss----pmmeTi~~ci~~iD~~vLeelip~l~el~R 1245 (1702)
T KOG0915|consen 1178 ---LN-AYSELEPQV----LNYLSLRLINIETEALDTLRASAAKSS----PMMETINKCINYIDISVLEELIPRLTELVR 1245 (1702)
T ss_pred ---HH-HccccchHH----HHHHHHhhhhhHHHHHHHHHHhhhcCC----cHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 11 111111122 223221112333444444332222221 123444455555455566666667777776
Q ss_pred hCcccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCc-cCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC
Q 006763 378 RYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAER-IDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE 456 (632)
Q Consensus 378 ~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~-i~~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e 456 (632)
..=.+-.++ .+-..++-+.-.|+.. .+....+++.++..+.+-++.+|-+.=.|..+|+--..++
T Consensus 1246 ~sVgl~Tkv--------------g~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~d 1311 (1702)
T KOG0915|consen 1246 GSVGLGTKV--------------GCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPD 1311 (1702)
T ss_pred ccCCCCcch--------------hHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChH
Confidence 542221000 0001111122224433 3456789999999999999999999999999997654433
Q ss_pred ChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcCCHH
Q 006763 457 GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 494 (632)
Q Consensus 457 ~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~~~~ 494 (632)
++++++..++.....+.+++- +-++.-...+.++..+
T Consensus 1312 q~qKLie~~l~~~l~k~es~~-siscatis~Ian~s~e 1348 (1702)
T KOG0915|consen 1312 QMQKLIETLLADLLGKDESLK-SISCATISNIANYSQE 1348 (1702)
T ss_pred HHHHHHHHHHHHHhccCCCcc-chhHHHHHHHHHhhHH
Confidence 588999998887654333322 3333333334444433
No 73
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.06 E-value=0.074 Score=56.48 Aligned_cols=217 Identities=21% Similarity=0.289 Sum_probs=136.6
Q ss_pred HHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHH
Q 006763 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (632)
Q Consensus 46 L~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L 125 (632)
.....+.+.+.++++.+|..|...++.+...+.++. +.+.+.|.++.||..|+.++.++. +|+. .+.+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av~~----l~~~l~d~~~~vr~~a~~aLg~~~--~~~a------~~~l 110 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEEAVPL----LRELLSDEDPRVRDAAADALGELG--DPEA------VPPL 110 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHHHHH----HHHHhcCCCHHHHHHHHHHHHccC--ChhH------HHHH
Confidence 467888999999999999999999999988776654 889999999999999999888764 3343 3555
Q ss_pred HHHhc-CCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHH
Q 006763 126 KDLIS-DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVT 204 (632)
Q Consensus 126 ~~lL~-D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~ 204 (632)
.++|. |.|..|..+|..+|..+.... .+..++..+.+...+.+...+ .
T Consensus 111 i~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~---------------------~ 159 (335)
T COG1413 111 VELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAAL---------------------D 159 (335)
T ss_pred HHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhc---------------------c
Confidence 56565 899999999999999885433 234455554443322211000 0
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhccccee-
Q 006763 205 PRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVF- 282 (632)
Q Consensus 205 ~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~~~f- 282 (632)
..+ ..+...++..+..+ .++.. ...+..++ .....+|..+...+..+....+.+. ..|
T Consensus 160 ~~~----~~~r~~a~~~l~~~----~~~~~--------~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~----~~l~ 219 (335)
T COG1413 160 AAL----LDVRAAAAEALGEL----GDPEA--------IPLLIELLEDEDADVRRAAASALGQLGSENVEAA----DLLV 219 (335)
T ss_pred chH----HHHHHHHHHHHHHc----CChhh--------hHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHH----HHHH
Confidence 000 05566666655543 23322 22333444 3455777777777777766531111 111
Q ss_pred EeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHH
Q 006763 283 FCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVR 329 (632)
Q Consensus 283 ~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~ 329 (632)
..+.++...+|.+++..|..+..++....+. .++.+.+...+.
T Consensus 220 ~~~~~~~~~vr~~~~~~l~~~~~~~~~~~l~----~~l~~~~~~~~~ 262 (335)
T COG1413 220 KALSDESLEVRKAALLALGEIGDEEAVDALA----KALEDEDVILAL 262 (335)
T ss_pred HHhcCCCHHHHHHHHHHhcccCcchhHHHHH----HHHhccchHHHH
Confidence 1244556788888888888777666544443 344444444433
No 74
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.04 E-value=0.015 Score=59.42 Aligned_cols=166 Identities=15% Similarity=0.222 Sum_probs=115.7
Q ss_pred CCChHHHhHHHHHhcCCCchhhHHHH------HHHHHhhhCCCChHHHHHHHHHHHHhhhhcc--ccccccchHHHHHH-
Q 006763 57 DPNPLIRALAVRTMGCIRVDKITEYL------CDPLQRCLKDDDPYVRKTAAICVAKLYDINA--ELVEDRGFLESLKD- 127 (632)
Q Consensus 57 ~~np~ir~lALr~L~~I~~~ei~~~l------~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p--~~v~~~~~~~~L~~- 127 (632)
+.+|.++..|+-+|++...-...+.+ ++.|.+.+.+++|-||.+|+.|+..+---.+ ..++ .+++.+.+
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik--~~i~~Vc~~ 101 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK--MYIPQVCEE 101 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH--HHHHHHHHH
Confidence 46899999999999998754444433 4778999999999999999999987654333 2333 35555444
Q ss_pred HhcC-CChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHH-----H
Q 006763 128 LISD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIV-----E 201 (632)
Q Consensus 128 lL~D-~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il-----~ 201 (632)
.+.+ -|..+..+++.+|..+.-.+. .-.+....+..++..+..-++-.|...|++|..+.. ++....+++ .
T Consensus 102 ~~s~~lns~~Q~agLrlL~nLtv~~~--~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~ 178 (254)
T PF04826_consen 102 TVSSPLNSEVQLAGLRLLTNLTVTND--YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLS 178 (254)
T ss_pred HhcCCCCCHHHHHHHHHHHccCCCcc--hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchh
Confidence 3443 477888999999998864432 223445567778887878888899999999998864 344444443 3
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHhhh
Q 006763 202 RVTPRLQHA-NCAVVLSAVKMILQQME 227 (632)
Q Consensus 202 ~v~~~L~~~-n~aVv~eaik~i~~~~~ 227 (632)
.+..+++.. +..+++.++..+-++..
T Consensus 179 ~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 179 SFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 344455554 56888888887776543
No 75
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.89 E-value=0.064 Score=55.60 Aligned_cols=142 Identities=16% Similarity=0.197 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhhcc-CchhHHHHHHHHHHHHHhhCc
Q 006763 195 EAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP 272 (632)
Q Consensus 195 ~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~-~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p 272 (632)
.....+..+..++.+.++-|+..|...|.++.+ .++ +-+..+. ..+-+.|+.+|+ .+..++--+|+.+..|+.-.-
T Consensus 240 ~isqalpiL~KLiys~D~evlvDA~WAiSYlsD-g~~-E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D 317 (526)
T COG5064 240 NISQALPILAKLIYSRDPEVLVDACWAISYLSD-GPN-EKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSD 317 (526)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc-CcH-HHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCc
Confidence 344456666677888889999999999887643 122 2232221 233345677775 567899999999988875421
Q ss_pred ---cchhc--ccceeEe-ccCCchhHHHHHHHHHHHhcCcccHHHH--------HHHHHHhhhhcCHHHHHHHHHHHHHH
Q 006763 273 ---TILAH--EIKVFFC-KYNDPIYVKMEKLEIMIKLASDRNIDQV--------LLEFKEYATEVDVDFVRKAVRAIGRC 338 (632)
Q Consensus 273 ---~~~~~--~~~~f~~-l~~dd~~Ik~~kL~lL~~L~n~~Ni~~I--------v~EL~~yl~~~d~~~~~~~i~aIg~l 338 (632)
.++-+ .++.|.. +.+.-.-||+++-=.+..++ ..|.++| +.-|.+.++..+..+++++..+|...
T Consensus 318 ~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT-AGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNa 396 (526)
T COG5064 318 DQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT-AGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNA 396 (526)
T ss_pred cceehheecccHHHHHHHhcChhhhhhhhhheeecccc-cCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11111 1222222 33333567776665555532 3333332 33445555556666666777776654
Q ss_pred H
Q 006763 339 A 339 (632)
Q Consensus 339 a 339 (632)
.
T Consensus 397 t 397 (526)
T COG5064 397 T 397 (526)
T ss_pred h
Confidence 4
No 76
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.78 E-value=0.13 Score=61.09 Aligned_cols=217 Identities=20% Similarity=0.239 Sum_probs=138.0
Q ss_pred HHHHHHhhcCCCChHHHhHHHHHhcCCCc----------hhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHhhhh----
Q 006763 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRV----------DKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI---- 111 (632)
Q Consensus 47 ~iNtl~kDl~~~np~ir~lALr~L~~I~~----------~ei~~~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~~---- 111 (632)
+..-+.-=+.|+...||+.||+||+.+-. .=..||+.|.+..++.| ...+||-+=|-|+.++...
T Consensus 463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF 542 (1431)
T KOG1240|consen 463 VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF 542 (1431)
T ss_pred hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHH
Confidence 55677888899999999999999987621 24567999999999999 8889998888887665331
Q ss_pred --------------cccc--ccc-------c----chHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHH
Q 006763 112 --------------NAEL--VED-------R----GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLS 164 (632)
Q Consensus 112 --------------~p~~--v~~-------~----~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~ 164 (632)
+|+. ..+ . ..-+.+..||.|.++.|..+.+-.+..+|.--++. .-+--.+.
T Consensus 543 le~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLs 620 (1431)
T KOG1240|consen 543 LELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILS 620 (1431)
T ss_pred HHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHH
Confidence 1221 111 0 12234456888999999888887777776422110 01112578
Q ss_pred HHHHHhhccChhhHHHHHHHHh---ccc-cCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh--ccCChHHHHHH
Q 006763 165 KLLTALNECTEWGQVFILDALS---RYK-AADAREAENIVERVTPRLQHANCAVVLSAVKMILQQME--LITSTDVVRNL 238 (632)
Q Consensus 165 ~Ll~~l~~~~ew~qi~lL~lL~---~y~-~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~--~i~~~~~~~~~ 238 (632)
+|+..|++-++-+.+...+-+. -|. +.+. .+-++..+..-|.....+|+..|..++..+.. .+..+. +..+
T Consensus 621 hLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~--seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~-v~~i 697 (1431)
T KOG1240|consen 621 HLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSV--SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA-VKDI 697 (1431)
T ss_pred HHHHHhcCccHHHHHHHHhhccceEEEEeeeeH--HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH-HHHH
Confidence 8899999885556777777776 232 3222 22345555556777888998887777654422 222222 2222
Q ss_pred HHhcccchhhhccCchhHHHHHHHHHHHHHhhC
Q 006763 239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRR 271 (632)
Q Consensus 239 ~~~~~~~L~~Lls~~~niryvaL~~l~~i~~~~ 271 (632)
.+-+.+ .|...+.=||+.++..|..+.+..
T Consensus 698 ~~~v~P---lL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 698 LQDVLP---LLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHhhhh---heeCchHHHHHHHHHHHHHHHhhh
Confidence 221211 222445569999999888887653
No 77
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.76 E-value=0.54 Score=54.94 Aligned_cols=413 Identities=15% Similarity=0.164 Sum_probs=199.6
Q ss_pred CCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcC
Q 006763 72 CIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (632)
Q Consensus 72 ~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~ 151 (632)
++....+-..+.+-..++.+|..|.||++++--+..+-..-++......+.+.+..+..|..-+|..+|+..+..+...-
T Consensus 228 ~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~ 307 (759)
T KOG0211|consen 228 SLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLL 307 (759)
T ss_pred CCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhc
Confidence 33445566677788889999999999999999998888777765555577888999999888899999999888886543
Q ss_pred CCCchhccHHHHHHHHHHhhccChhhHHHH-----HHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 006763 152 SRPIFEITSHTLSKLLTALNECTEWGQVFI-----LDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQM 226 (632)
Q Consensus 152 ~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~l-----L~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~ 226 (632)
.... +..+.....+++... -..|-+.+. .++-..+.+ +.. .......+...+++.-..+.++.++-.-.+.
T Consensus 308 ~~~~-d~~~~~~~~l~~~~~-d~~~~v~~~~~~~~~~L~~~~~~-~~~-~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~ 383 (759)
T KOG0211|consen 308 DDDD-DVVKSLTESLVQAVE-DGSWRVSYMVADKFSELSSAVGP-SAT-RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLA 383 (759)
T ss_pred CCch-hhhhhhhHHHHHHhc-ChhHHHHHHHhhhhhhHHHHhcc-ccC-cccchhhHHHHhcchhhhhhHHhhcchHHHh
Confidence 2211 222222233333322 233433221 111112222 000 0011112222233332333333332222211
Q ss_pred hccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCc--cchhcccceeE-eccCCchhHHHHHHHHHHH
Q 006763 227 ELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP--TILAHEIKVFF-CKYNDPIYVKMEKLEIMIK 302 (632)
Q Consensus 227 ~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p--~~~~~~~~~f~-~l~~dd~~Ik~~kL~lL~~ 302 (632)
.+.+.+.........+.+.+..+. .+...+|-.....+..+....| ..+......+. .+.++...|+.--.+.+..
T Consensus 384 ~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~ 463 (759)
T KOG0211|consen 384 CYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSL 463 (759)
T ss_pred hhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHH
Confidence 111110000000001111111122 1223333322222222222211 12222222222 2444455566555533322
Q ss_pred ---hcCcccHHHHHHHHH----HhhhhcCHHHHHHHHHHHHHHHHhhh-h-hHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 006763 303 ---LASDRNIDQVLLEFK----EYATEVDVDFVRKAVRAIGRCAIKLE-R-AAERCISVLLELIKIKVNYVVQEAIIVIK 373 (632)
Q Consensus 303 ---L~n~~Ni~~Iv~EL~----~yl~~~d~~~~~~~i~aIg~la~k~~-~-~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~ 373 (632)
.-...++..+.+-++ +...+..-..+.++++.|-.++.... . ..+.+-..+...+.+....+...+...+.
T Consensus 464 ~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~ 543 (759)
T KOG0211|consen 464 LEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLP 543 (759)
T ss_pred HHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhH
Confidence 112223333333333 33333334455566677776666543 1 12234444444455555566666777777
Q ss_pred HHHhhCc--ccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCccCC---HHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 006763 374 DIFRRYP--NTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVK 448 (632)
Q Consensus 374 ~ilr~~p--~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~---~~~~l~~l~~~f~~e~~~vq~~iLta~~K 448 (632)
.++..+. .....++.++.....+- .-..+.+++..+-+++..... ..+++-.+.+-..+-.++||.-+.-.+-|
T Consensus 544 ~l~~~~G~~w~~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~ 622 (759)
T KOG0211|consen 544 ALVETFGSEWARLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPK 622 (759)
T ss_pred HHHHHhCcchhHHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHH
Confidence 7666554 22344555554433221 012244555555555444333 24455555444455667999877666666
Q ss_pred HhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhc
Q 006763 449 LFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (632)
Q Consensus 449 l~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~ 490 (632)
+.-.-......+.+..+++... .+.|.|+|=||-.-...+.
T Consensus 623 i~~~L~~~~~~~~v~pll~~L~-~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 623 ILKLLDESVRDEEVLPLLETLS-SDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HHhhcchHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHHH
Confidence 6332211125677888887654 4689999999887666554
No 78
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.71 E-value=0.016 Score=64.73 Aligned_cols=132 Identities=18% Similarity=0.246 Sum_probs=111.5
Q ss_pred CCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC-----chhhHH-------HHHHHHH
Q 006763 20 TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-----VDKITE-------YLCDPLQ 87 (632)
Q Consensus 20 s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~-----~~ei~~-------~l~~~v~ 87 (632)
-+|..--|-+-+|+..+..-.|.+++---|.+.+=|.+.....|+.-+...+++. .++|.+ .++.-+.
T Consensus 273 ~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ 352 (1128)
T COG5098 273 LPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLV 352 (1128)
T ss_pred cccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHH
Confidence 4566666778899999999999999988999999999999999999999999973 455655 6777788
Q ss_pred hhhCCCChHHHHHHHHHHHHhhhhcccccc-ccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcC
Q 006763 88 RCLKDDDPYVRKTAAICVAKLYDINAELVE-DRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (632)
Q Consensus 88 ~~L~d~~pyVRK~A~~al~kl~~~~p~~v~-~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~ 151 (632)
+-+.|.+||+|-||+..+.|+|+.+...+. ...++......|.|+...|..+|+..+..+.-..
T Consensus 353 ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 353 ERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred HHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999998765554 2357788888999999999999999998876543
No 79
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.70 E-value=0.0078 Score=60.24 Aligned_cols=138 Identities=19% Similarity=0.259 Sum_probs=88.2
Q ss_pred HHHhhcCCCcchHHHHHHHHHHhcCC----CCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCch-hhHHHH-HHHHH
Q 006763 14 VVNCMQTENLELKKLVYLYLINYAKS----QPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD-KITEYL-CDPLQ 87 (632)
Q Consensus 14 vi~l~~s~d~~~Krl~YLyl~~~~~~----~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~-ei~~~l-~~~v~ 87 (632)
+++.+.+.+..+=+-+-..+..++.. -...+-.+++.+.+=+.+++..+|..|-++|-.|... .+...+ .+.+.
T Consensus 58 i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~ 137 (228)
T PF12348_consen 58 IIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILS 137 (228)
T ss_dssp HHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Confidence 33455555555555555555555432 1223566778999999999999999988877766432 222333 78889
Q ss_pred hhhCCCChHHHHHHHHHHHHhhhhcc---ccccc----cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcC
Q 006763 88 RCLKDDDPYVRKTAAICVAKLYDINA---ELVED----RGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (632)
Q Consensus 88 ~~L~d~~pyVRK~A~~al~kl~~~~p---~~v~~----~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~ 151 (632)
.+..|++|-||..++.++..+....+ ..+.. ..+.+.+.+++.|.++.|..+|-.++..+...-
T Consensus 138 ~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 138 QGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999998877 33332 236788888999999999999988888876543
No 80
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.81 Score=52.55 Aligned_cols=133 Identities=20% Similarity=0.177 Sum_probs=89.0
Q ss_pred hcCCCcchHHHHHHHHHHhcCCCCcH-----HHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchh---------------
Q 006763 18 MQTENLELKKLVYLYLINYAKSQPDL-----AILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK--------------- 77 (632)
Q Consensus 18 ~~s~d~~~Krl~YLyl~~~~~~~~el-----~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~e--------------- 77 (632)
-.++=++.||=+-+++.-+++..-+. +-=.|+++++|-. ||-+.+.||.|++.+-..+
T Consensus 32 essTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~--D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~ 109 (970)
T KOG0946|consen 32 ESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM--DPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDL 109 (970)
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC--CHHHHHHHHHHHHHHHhcCcchhhcccchhhhHH
Confidence 35677899999999999998866442 2235788888877 5678889999999874432
Q ss_pred ---hHH------HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccc-----cchHHHHHHHhcCCChhHHHHHHHH
Q 006763 78 ---ITE------YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED-----RGFLESLKDLISDNNPMVVANAVAA 143 (632)
Q Consensus 78 ---i~~------~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~-----~~~~~~L~~lL~D~d~~Vv~~Al~a 143 (632)
+++ ..+..+...+.+.+-+||+.|+--+..+...-|..+.+ +.=+..+..+|.|..--+.-.|+..
T Consensus 110 g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLl 189 (970)
T KOG0946|consen 110 GLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILL 189 (970)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHH
Confidence 111 23455666667778888888887777777666654332 1224556667777665566666666
Q ss_pred HHHHHhcCC
Q 006763 144 LAEIEENSS 152 (632)
Q Consensus 144 L~eI~~~~~ 152 (632)
|+++...++
T Consensus 190 L~eL~k~n~ 198 (970)
T KOG0946|consen 190 LSELVKDNS 198 (970)
T ss_pred HHHHHccCc
Confidence 667665543
No 81
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=1.8 Score=49.26 Aligned_cols=407 Identities=16% Similarity=0.214 Sum_probs=222.9
Q ss_pred hHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCC--hhHH
Q 006763 60 PLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNN--PMVV 137 (632)
Q Consensus 60 p~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d--~~Vv 137 (632)
-.|==+++..|-+ .+.++...+...|++-|.+.+|.----|..|+..+-.. +..+ .|.+.+.++|...+ +.|.
T Consensus 91 KqIGYl~is~L~n-~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~e--a~~~DI~KlLvS~~~~~~vk 165 (938)
T KOG1077|consen 91 KQIGYLFISLLLN-ENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAE--AFADDIPKLLVSGSSMDYVK 165 (938)
T ss_pred HHHhHHHHHHHHh-cchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHH--HhhhhhHHHHhCCcchHHHH
Confidence 3444455555544 45788899999999999999998778888888877543 3333 36677788886443 4554
Q ss_pred HHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChh----hHHHHHHHHhccccCCHHH-----HHHHHHHHH---H
Q 006763 138 ANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEW----GQVFILDALSRYKAADARE-----AENIVERVT---P 205 (632)
Q Consensus 138 ~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew----~qi~lL~lL~~y~~~~~~~-----~~~il~~v~---~ 205 (632)
-.|...|..+-.++|.. +.. ..-..+++..|.|.+ . .-+.++.+|.++.|.+-.. ...+...+. +
T Consensus 166 qkaALclL~L~r~spDl-~~~-~~W~~riv~LL~D~~-~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t 242 (938)
T KOG1077|consen 166 QKAALCLLRLFRKSPDL-VNP-GEWAQRIVHLLDDQH-MGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGT 242 (938)
T ss_pred HHHHHHHHHHHhcCccc-cCh-hhHHHHHHHHhCccc-cceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhccc
Confidence 44444444555555421 100 011345555554433 2 2456777777776543211 111111111 0
Q ss_pred hhc------CCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccC-----------chhHHHHHH-HHHHHH
Q 006763 206 RLQ------HANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-----------EPEIQYVAL-RNINLI 267 (632)
Q Consensus 206 ~L~------~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls~-----------~~niryvaL-~~l~~i 267 (632)
-++ -.+|=.....++++..+ |..+++....+ +...|-++|++ +.|.+-.+| +.|..+
T Consensus 243 ~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D~~~r~~----l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~ 317 (938)
T KOG1077|consen 243 SLQDYTYYFVPAPWLQVKLLRLLQIY-PTPEDPSTRAR----LNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA 317 (938)
T ss_pred chhhceeecCCChHHHHHHHHHHHhC-CCCCCchHHHH----HHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHH
Confidence 011 12344444555555443 44444433222 22223333321 124444443 333333
Q ss_pred Hhh--Cccchhccccee-EeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHH----Hhhh-hcCHHHHHHHHHHHHHHH
Q 006763 268 VQR--RPTILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFK----EYAT-EVDVDFVRKAVRAIGRCA 339 (632)
Q Consensus 268 ~~~--~p~~~~~~~~~f-~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~----~yl~-~~d~~~~~~~i~aIg~la 339 (632)
... .|+++.+....+ ..+.+..+.||..+||-+..|++.+-..+.++.=. .-++ +.|..++++++.-+..++
T Consensus 318 ~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mc 397 (938)
T KOG1077|consen 318 IHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMC 397 (938)
T ss_pred HHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh
Confidence 332 355665544322 11335557799999999999998876666655433 2333 689999999999998888
Q ss_pred HhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCc---ccHHHHHHHHHHhhccCChhhHHHHHHHHH------
Q 006763 340 IKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP---NTYESIIATLCESLDTLDEPEAKASMIWII------ 410 (632)
Q Consensus 340 ~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p---~~~~~ii~~L~~~l~~i~~p~a~~~~iWiL------ 410 (632)
.. +.++.+|+-|++.|......+.+|.+.-+.-+-.+|- +.+..++-+|+..-.+..+.++-..++.|+
T Consensus 398 D~--~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedl 475 (938)
T KOG1077|consen 398 DV--SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDL 475 (938)
T ss_pred ch--hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhh
Confidence 65 6788999999999999888888888776665666653 356666666665544443444322222222
Q ss_pred --------hcccCcc-------CCHHHHHHHHh---hhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHH-HHHHhhhc
Q 006763 411 --------GEYAERI-------DNADELLESFL---ESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQ-VVLNNATV 471 (632)
Q Consensus 411 --------GEy~~~i-------~~~~~~l~~l~---~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~-~ll~~~~~ 471 (632)
-||-+.. .-..++|-.|- ......++.+|..+|. -|++...|. .+.++. ..++.+ +
T Consensus 476 q~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh--~K~~~~s~~--tr~lLLtTyiKl~-n 550 (938)
T KOG1077|consen 476 QGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLH--EKLHLCSPV--TRALLLTTYIKLI-N 550 (938)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHH--HHhccCChh--HHHHHHHHHHHHH-h
Confidence 2221111 11223443332 2333456777776664 466554454 444433 333432 2
Q ss_pred CCCChHHHhhHHHHHHH
Q 006763 472 ETDNPDLRDRAYIYWRL 488 (632)
Q Consensus 472 ~s~~~dvrdRA~~y~~L 488 (632)
..||++++-.-..+.
T Consensus 551 --l~PEi~~~v~~vFq~ 565 (938)
T KOG1077|consen 551 --LFPEIKSNVQKVFQL 565 (938)
T ss_pred --hChhhhHHHHHHHHh
Confidence 348888776555554
No 82
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.50 E-value=0.012 Score=50.77 Aligned_cols=66 Identities=20% Similarity=0.319 Sum_probs=55.7
Q ss_pred chhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccc--cchHHHHHHHhcCCChhHHHHH
Q 006763 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANA 140 (632)
Q Consensus 75 ~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~--~~~~~~L~~lL~D~d~~Vv~~A 140 (632)
..+..+.++++|.+++.|+++-||-.|+.+++.+.+...+.+-. ..+.+.|.+++.|.|+.|..+|
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 56788899999999999999999999999999999876654432 2356777889999999999877
No 83
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.48 E-value=0.38 Score=54.12 Aligned_cols=65 Identities=18% Similarity=0.328 Sum_probs=50.3
Q ss_pred HHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCC
Q 006763 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (632)
Q Consensus 85 ~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~ 152 (632)
.|..+.+ .++-+++-|+--+.|+|+..|++.++ -++.+.+|..|.|..|...|+..|-.+|+.++
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~--Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~ 91 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE--AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP 91 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH--HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH--HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH
Confidence 3444444 46889999999999999999999884 78999999999999999999999988887664
No 84
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.46 E-value=0.0049 Score=41.35 Aligned_cols=30 Identities=33% Similarity=0.474 Sum_probs=25.8
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHhhhh
Q 006763 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDI 111 (632)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~A~~al~kl~~~ 111 (632)
++|.+.++++|++|.||+.|+.|+.++.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 568899999999999999999999998753
No 85
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.43 E-value=0.11 Score=54.59 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=100.8
Q ss_pred HHHHHHHH-HhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHH
Q 006763 310 DQVLLEFK-EYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIA 388 (632)
Q Consensus 310 ~~Iv~EL~-~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~ 388 (632)
..+++.|. .-++..|..+++.+++.+|-++.-..+.+..++..++..++.+.+.+.-.++.++.|++..|+-.
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~------ 98 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGID------ 98 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch------
Confidence 37788877 56778899999999999999999888888999999999997766667777788888888766511
Q ss_pred HHHHhhccCChhhHHHHHHHHHhcccCccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh
Q 006763 389 TLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN 468 (632)
Q Consensus 389 ~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~ 468 (632)
.++....+. .-.....+++.+.+-+..+++++|..+...++||+...--.+...++..++-.
T Consensus 99 ----~~~~~~~~~--------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~ 160 (298)
T PF12719_consen 99 ----IFDSESDND--------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLL 160 (298)
T ss_pred ----hccchhccC--------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 111111111 12234556666666666778889999999999998865332114455554443
Q ss_pred hh--cCCCChHHHhh
Q 006763 469 AT--VETDNPDLRDR 481 (632)
Q Consensus 469 ~~--~~s~~~dvrdR 481 (632)
.+ ...+|..+||-
T Consensus 161 yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 161 YFNPSTEDNQRLRQC 175 (298)
T ss_pred HcCcccCCcHHHHHH
Confidence 22 12345667764
No 86
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.35 E-value=0.0098 Score=45.37 Aligned_cols=49 Identities=31% Similarity=0.363 Sum_probs=37.7
Q ss_pred hHHHhHHHHHhcCCCc------hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHh
Q 006763 60 PLIRALAVRTMGCIRV------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKL 108 (632)
Q Consensus 60 p~ir~lALr~L~~I~~------~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl 108 (632)
|.+|..|+.+|+++.. ....+.+++.+.++|.|+++.||.+|+.|+.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5678888888887642 345557788888888888889999998888653
No 87
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.34 E-value=0.2 Score=59.74 Aligned_cols=130 Identities=17% Similarity=0.207 Sum_probs=80.8
Q ss_pred CCchhHHHHHHHHHHHhc----CcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHhhh
Q 006763 287 NDPIYVKMEKLEIMIKLA----SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA--AERCISVLLELIKIK 360 (632)
Q Consensus 287 ~dd~~Ik~~kL~lL~~L~----n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~--~~~~v~~Ll~ll~~~ 360 (632)
+.+.+||+.=|+-|..|| .+++=+.|+..|..|+.+.|..+|-.-...|.-++.-...- .+-.+..|.+-|.+.
T Consensus 589 d~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~ 668 (1431)
T KOG1240|consen 589 DSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDG 668 (1431)
T ss_pred CCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCc
Confidence 444678887777777666 56666789999999999999999988888887666554433 344455666667777
Q ss_pred chhhHHHHHHHHHHHHhhCcccHHHHHHHHHHh-hccCChhhH--HHHHHHHHhcccCcc
Q 006763 361 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCES-LDTLDEPEA--KASMIWIIGEYAERI 417 (632)
Q Consensus 361 ~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~-l~~i~~p~a--~~~~iWiLGEy~~~i 417 (632)
.+.|.-.++..+.-++.. .-+++..+..+.+. +--+-+|.. +.+++-+|-+-...+
T Consensus 669 EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 669 EEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred chhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 777877777776666542 33333333333321 112224543 555555554443333
No 88
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.33 E-value=0.037 Score=62.02 Aligned_cols=163 Identities=22% Similarity=0.271 Sum_probs=113.1
Q ss_pred CCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcC-CCChHHHhHHHHHhcCCCc--hhhHHHHHHHHHhhhCCCChHH
Q 006763 21 ENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIRV--DKITEYLCDPLQRCLKDDDPYV 97 (632)
Q Consensus 21 ~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~-~~np~ir~lALr~L~~I~~--~ei~~~l~~~v~~~L~d~~pyV 97 (632)
+|.++.+.+|+-+..+.--..+.+.---..|..-+. +|+|.||+.|.-.||-+.. ...++.....+-+-|.|.+.-|
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V 987 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADV 987 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHH
Confidence 688899999998877654333332222333444454 8999999999999988743 4666777777889999999999
Q ss_pred HHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhh
Q 006763 98 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWG 177 (632)
Q Consensus 98 RK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~ 177 (632)
||++.|.+.-+.....=.++ |....+..+|.|.|..+---|=..+.+++.++..-+ .-+..+...+...++-+
T Consensus 988 ~rtclmti~fLilagq~KVK--Gqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~y-----n~fidifs~ls~~ae~g 1060 (1128)
T COG5098 988 RRTCLMTIHFLILAGQLKVK--GQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTMY-----NGFIDIFSTLSSDAENG 1060 (1128)
T ss_pred HHHHHHHHHHHHHccceeec--cchhhhHhhccCCcchHHHHHHHHHHHHHhcccchh-----hhhHHHHHHcCchhhcC
Confidence 99999999987765544444 677899999999999988888888889987653210 11122333444333333
Q ss_pred H---HHHHHHHhcccc
Q 006763 178 Q---VFILDALSRYKA 190 (632)
Q Consensus 178 q---i~lL~lL~~y~~ 190 (632)
| -.|+++|..|..
T Consensus 1061 ~e~fk~II~FLt~fI~ 1076 (1128)
T COG5098 1061 QEPFKLIIGFLTDFIS 1076 (1128)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 3 357777777653
No 89
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=4.1 Score=48.61 Aligned_cols=246 Identities=21% Similarity=0.223 Sum_probs=129.3
Q ss_pred chhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCC-ChhHHHHHHHHHHHHHhcCCC
Q 006763 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN-NPMVVANAVAALAEIEENSSR 153 (632)
Q Consensus 75 ~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~-d~~Vv~~Al~aL~eI~~~~~~ 153 (632)
+|+++|.++..+..+++|++..||..||-++.|+....|-..-+ ..+..+.+++.-. +++.--.|+.+|.|+....
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-- 411 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRG-- 411 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC--
Confidence 46899999999999999999999999999999999887733322 2444444455533 3556667777787876543
Q ss_pred CchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhccCCh
Q 006763 154 PIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQH-ANCAVVLSAVKMILQQMELITST 232 (632)
Q Consensus 154 ~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~-~n~aVv~eaik~i~~~~~~i~~~ 232 (632)
+- .+..+..++- .|++.|. |. ...-++ .+..|.=+|.-++..+... .++
T Consensus 412 --lL-lps~l~dVvp-----------lI~kaL~-Yd--------------~~~G~~s~G~~VRDaAcY~~WAf~Ra-ys~ 461 (1133)
T KOG1943|consen 412 --LL-LPSLLEDVVP-----------LILKALH-YD--------------VRRGQHSVGQHVRDAACYVCWAFARA-YSP 461 (1133)
T ss_pred --Cc-chHHHHHHHH-----------HHHHHhh-hh--------------hhhcccccccchHHHHHHHHHHHHhc-CCh
Confidence 10 0111111110 1111111 10 011122 2334444443333333221 144
Q ss_pred HHHHHHHHhcccchhh--hccCchhHHHHHHHHHHHHHhhCccc-----hhcccceeEeccCCchhHHHHHHHHHHHhcC
Q 006763 233 DVVRNLCKKMAPPLVT--LLSAEPEIQYVALRNINLIVQRRPTI-----LAHEIKVFFCKYNDPIYVKMEKLEIMIKLAS 305 (632)
Q Consensus 233 ~~~~~~~~~~~~~L~~--Lls~~~niryvaL~~l~~i~~~~p~~-----~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n 305 (632)
+.++-+..++...|+. +...+-|.|+.|--.+...+.+.+++ +..+...| ...+.. ..=+++=..++.
T Consensus 462 ~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~-sV~~rs----Ncy~~l~~~ia~ 536 (1133)
T KOG1943|consen 462 SDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYF-SVTNRS----NCYLDLCVSIAE 536 (1133)
T ss_pred hhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchh-hhhhhh----hHHHHHhHHHHh
Confidence 4444444455554432 33567799999999999999886654 11111111 110000 001111111221
Q ss_pred -cccHHHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHh
Q 006763 306 -DRNIDQVLLEFKEY-ATEVDVDFVRKAVRAIGRCAIKLERAAE-RCISVLLELIK 358 (632)
Q Consensus 306 -~~Ni~~Iv~EL~~y-l~~~d~~~~~~~i~aIg~la~k~~~~~~-~~v~~Ll~ll~ 358 (632)
+.=.+.++++|..- +..=|..++..+..++.+++...|+... .++.-+++...
T Consensus 537 ~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l 592 (1133)
T KOG1943|consen 537 FSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTL 592 (1133)
T ss_pred hhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc
Confidence 11133444444432 3334777888888889888888776433 34444444433
No 90
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.20 E-value=0.55 Score=48.95 Aligned_cols=218 Identities=19% Similarity=0.212 Sum_probs=149.4
Q ss_pred HHHHHhhcCCCChHHHhHHHHHhcCCCc--hhhHHHH-----HHHHHhhhCCCCh--HHHHHHHHHHHHhhh-hccc--c
Q 006763 48 VNTFVKDSQDPNPLIRALAVRTMGCIRV--DKITEYL-----CDPLQRCLKDDDP--YVRKTAAICVAKLYD-INAE--L 115 (632)
Q Consensus 48 iNtl~kDl~~~np~ir~lALr~L~~I~~--~ei~~~l-----~~~v~~~L~d~~p--yVRK~A~~al~kl~~-~~p~--~ 115 (632)
+.-|..=|.+++..+|--|+=+|++|.. +.+-+++ +.++..++.++.+ -.-|+|-..+..+.+ ++|. -
T Consensus 159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w 238 (526)
T COG5064 159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238 (526)
T ss_pred hHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch
Confidence 4557777889999999999999999963 3333333 3567777776555 455788888998887 4553 1
Q ss_pred ccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchh--ccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCH
Q 006763 116 VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE--ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA 193 (632)
Q Consensus 116 v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~--l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~ 193 (632)
-.-..-++.|.+|+...|+.|+.-|+=++..+.... .+..+ +......+|+..|...+--.|.-+||.+......++
T Consensus 239 ~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~-~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D 317 (526)
T COG5064 239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP-NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSD 317 (526)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc-HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCc
Confidence 111245788999999999999999999999886432 11111 223345677887777777778889999988776554
Q ss_pred HHHHH-----HHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhhcc-CchhHHHHHHHHHHH
Q 006763 194 REAEN-----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINL 266 (632)
Q Consensus 194 ~~~~~-----il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~-~~~~~~L~~Lls-~~~niryvaL~~l~~ 266 (632)
...+- .+..+.++|.|.-..+.-|++.+|.+++. .+.+-++.++ .++++||+.+|+ .+--+|--|...+..
T Consensus 318 ~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA--Gnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisN 395 (526)
T COG5064 318 DQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA--GNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISN 395 (526)
T ss_pred cceehheecccHHHHHHHhcChhhhhhhhhheeeccccc--CCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33332 34556677888777999999999987643 2444444433 478899999886 355566655555554
Q ss_pred HH
Q 006763 267 IV 268 (632)
Q Consensus 267 i~ 268 (632)
..
T Consensus 396 at 397 (526)
T COG5064 396 AT 397 (526)
T ss_pred hh
Confidence 43
No 91
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=96.11 E-value=0.052 Score=52.86 Aligned_cols=151 Identities=15% Similarity=0.176 Sum_probs=97.2
Q ss_pred HHHHHhhcCCCChHHHhHHHHHhcCCCchhhHH--HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHH
Q 006763 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE--YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (632)
Q Consensus 48 iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~--~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L 125 (632)
.+.+.+-+.+++..+|-.|++.+..+....++. ..+|.+.-+..|+++++|++|...+-.++.++|+.+.. .+.+-+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~-~~~~gi 88 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES-RYSEGI 88 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH-HHHHHH
Confidence 345666778999999999999999875554444 45677888999999999999999999999999998874 455554
Q ss_pred HH-------HhcCCChhH---HHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhcc----------Ch-hhHHHHHHH
Q 006763 126 KD-------LISDNNPMV---VANAVAALAEIEENSSRPIFEITSHTLSKLLTALNEC----------TE-WGQVFILDA 184 (632)
Q Consensus 126 ~~-------lL~D~d~~V---v~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~----------~e-w~qi~lL~l 184 (632)
+. +-.|..... ..+.+..++++...+...+.. .+..|++.+... .+ +...++.+.
T Consensus 89 ~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~----Fl~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~n 164 (187)
T PF12830_consen 89 RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK----FLKSLLKQFDFDLTKLSSESSPSDLDFLLFLAEN 164 (187)
T ss_pred HHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH----HHHHHHHHHHhhccccccccchhHHHHHHHHHHH
Confidence 43 222332222 556677777777644332222 234444443321 11 224456666
Q ss_pred HhccccCCHHHHHHHHHHH
Q 006763 185 LSRYKAADAREAENIVERV 203 (632)
Q Consensus 185 L~~y~~~~~~~~~~il~~v 203 (632)
|+.+.-...+|...++..+
T Consensus 165 LA~l~y~~~~E~l~vi~~i 183 (187)
T PF12830_consen 165 LATLPYQTQDEVLYVIHHI 183 (187)
T ss_pred HhcCCCCChhHHHHHHHHH
Confidence 6655555555555555443
No 92
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.07 E-value=5.7 Score=49.05 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=54.5
Q ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccCchhHHHH
Q 006763 180 FILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYV 259 (632)
Q Consensus 180 ~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls~~~niryv 259 (632)
.+++++.+|.-..++....+++.+..+....+.+|.--++|.+..+....++-+.+..++ +..|.+.-..+.+|+=+
T Consensus 874 AaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~c---akmlrRv~DEEg~I~kL 950 (1692)
T KOG1020|consen 874 AALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMC---AKMLRRVNDEEGNIKKL 950 (1692)
T ss_pred HHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHH---HHHHHHhccchhHHHHH
Confidence 455666666666677778888888888888999999999998877643222322222222 22222222235568888
Q ss_pred HHHHHHHH
Q 006763 260 ALRNINLI 267 (632)
Q Consensus 260 aL~~l~~i 267 (632)
+..++..+
T Consensus 951 v~etf~kl 958 (1692)
T KOG1020|consen 951 VRETFLKL 958 (1692)
T ss_pred HHHHHHHH
Confidence 88877765
No 93
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.02 E-value=0.41 Score=55.82 Aligned_cols=399 Identities=16% Similarity=0.197 Sum_probs=205.8
Q ss_pred HHHhHHHHHhcCC----CchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccccc-ccchHHHHHHHhcCCChh
Q 006763 61 LIRALAVRTMGCI----RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE-DRGFLESLKDLISDNNPM 135 (632)
Q Consensus 61 ~ir~lALr~L~~I----~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~-~~~~~~~L~~lL~D~d~~ 135 (632)
-++-.|++.+-++ ....+.+.+.-.++.+.+|+-.-|||+++-++.++...+|-.+. ...|+..+..+++|.+..
T Consensus 592 ~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~ 671 (1529)
T KOG0413|consen 592 PVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESD 671 (1529)
T ss_pred ccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHH
Confidence 4555566665554 34577777788888899999999999999999999999998764 246999999999999999
Q ss_pred HHHHHHHHHHHHHhc---CCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCC--
Q 006763 136 VVANAVAALAEIEEN---SSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHA-- 210 (632)
Q Consensus 136 Vv~~Al~aL~eI~~~---~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~-- 210 (632)
|...|.-.+...... ++.. ....||..+..... ...++...+..+...+ ......++ ...+|.
T Consensus 672 v~e~a~~~i~k~l~p~~~~~~d-------laW~LL~~i~~~~~-~s~yl~~~~h~w~~~~-k~~~t~~d---~~~~hsG~ 739 (1529)
T KOG0413|consen 672 VTEHARKLIMKVLTPLLENSSD-------LAWTLLDTIESVTN-HSQYLMSTLHDWVREK-KVKRTVMD---SMKQHSGS 739 (1529)
T ss_pred HHHHHHHHHHHHHhhhcccCCc-------hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hcchhhhh---hhhcccCc
Confidence 999998877665421 1111 11222332222111 1222333332222110 00112232 223333
Q ss_pred ---CHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccCchhHHHH--HHHHHHHHHhhCcc-chhccccee--
Q 006763 211 ---NCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYV--ALRNINLIVQRRPT-ILAHEIKVF-- 282 (632)
Q Consensus 211 ---n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls~~~niryv--aL~~l~~i~~~~p~-~~~~~~~~f-- 282 (632)
+++-..-. ++..+ .+. +. + ......=..+-..+++++|+ ++.+|..|...-|. .+..+..-|
T Consensus 740 E~~~~aWm~~s-~~~~q------~~~-~d-~-S~~~~s~~~~s~~~N~~~~L~hI~~~i~~i~~~l~s~~vd~~~~a~K~ 809 (1529)
T KOG0413|consen 740 EKLDGAWMVFS-QLCVQ------FEQ-VD-F-SIETFSRVDLSRESNLVQYLIHIIENIKKIDDDLKSDLVDTLQGAFKD 809 (1529)
T ss_pred ccCcchHHHHH-HHHhc------ccc-cc-e-eeecccccccchhhhHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHH
Confidence 22211110 11111 111 00 0 00011111222234467776 35566666554443 344455544
Q ss_pred EeccCCc---hhHHHHHHHHHHHhc---Cc---ccHHHHHHHHHHhhhhc-----C--------HHHHH----HHHHHHH
Q 006763 283 FCKYNDP---IYVKMEKLEIMIKLA---SD---RNIDQVLLEFKEYATEV-----D--------VDFVR----KAVRAIG 336 (632)
Q Consensus 283 ~~l~~dd---~~Ik~~kL~lL~~L~---n~---~Ni~~Iv~EL~~yl~~~-----d--------~~~~~----~~i~aIg 336 (632)
+|+.+-. ...-....+-+-.++ .+ .-++.+...-..++... | ...-+ ...-+.|
T Consensus 810 ~Ck~~~~~~s~e~~~~~~d~i~~~sl~~~e~~~~~iE~l~~~c~d~i~~~~~~~~~~~~~~~~s~~~~~~l~~~y~v~~~ 889 (1529)
T KOG0413|consen 810 YCKHPSSRSSYECLGKLMDGIGDRSLHGKEFSDFGIETLLIKCFDTIVQSFEMFKDKDEWKRNSESQERLLCTAYNVAFS 889 (1529)
T ss_pred HHcCCccccHHHHHHHHHHHHHHHHhhcccCchHHHhhHHHhccceehhHHhhhhhhHHHhhcchhHHHHHHHHhhcccc
Confidence 3764441 112222333332222 11 11111111111111110 0 11111 1112223
Q ss_pred HHHHhhh-hhHHHHHHHHHHHHhhhc-----------------------------hhhHHHHHHHHHHHHhhCcccHHHH
Q 006763 337 RCAIKLE-RAAERCISVLLELIKIKV-----------------------------NYVVQEAIIVIKDIFRRYPNTYESI 386 (632)
Q Consensus 337 ~la~k~~-~~~~~~v~~Ll~ll~~~~-----------------------------~~v~~e~i~~l~~ilr~~p~~~~~i 386 (632)
.++.-+| ......+..|.+....+. +.+..-.|..+.++.-.+..+.+..
T Consensus 890 ~~~ql~P~ar~~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~v~g~~~~~~vra~~vvTlakmcLah~~LaKr~ 969 (1529)
T KOG0413|consen 890 YSPQLVPHARLGKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSKVEGAMFSDKVRAVGVVTLAKMCLAHDRLAKRL 969 (1529)
T ss_pred ccceeccchhccceeeeeeeeeccCCCCCCCCCccchhhCcccCCCccccccccchHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4444445 222333444433333221 1244455667777776677777777
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHhcccCccCC-HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHh----hcCCCCChHHH
Q 006763 387 IATLCESLDTLDEPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLF----LKKPTEGPQQM 461 (632)
Q Consensus 387 i~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~-~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~----~~~p~e~~~~~ 461 (632)
++.|.+-|+..+.-..+..++-.+|.+|-.-.. ...++-.+...+.+-++.||.+.+..+++|. +++..+ -+
T Consensus 970 ~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~---Lf 1046 (1529)
T KOG0413|consen 970 MPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNGE---LF 1046 (1529)
T ss_pred HHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcchh---hH
Confidence 888888887665555566777777777643221 2345555666777888999999998999884 344432 24
Q ss_pred HHHHHHhhhcCCCChHHHhhHHHHHH
Q 006763 462 IQVVLNNATVETDNPDLRDRAYIYWR 487 (632)
Q Consensus 462 v~~ll~~~~~~s~~~dvrdRA~~y~~ 487 (632)
+..++.+ . +.++|+|.-|-||..
T Consensus 1047 ~Rf~l~l-~--D~~edIr~~a~f~~~ 1069 (1529)
T KOG0413|consen 1047 IRFMLAL-L--DANEDIRNDAKFYIS 1069 (1529)
T ss_pred HHHHHHH-c--ccCHHHHHHHHHHHH
Confidence 5555553 2 468999999999876
No 94
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=1.8 Score=53.27 Aligned_cols=320 Identities=18% Similarity=0.183 Sum_probs=185.1
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhc---CCChhHHHHHHHHHHHHHhcCCCCchh
Q 006763 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS---DNNPMVVANAVAALAEIEENSSRPIFE 157 (632)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~---D~d~~Vv~~Al~aL~eI~~~~~~~~~~ 157 (632)
-++|-+-+-=-|+++-|+... ..+-+..-.++..+.+.-+-+++.+||. ++.--|.-+++.||.++.+..+. +
T Consensus 998 kLIPrLyRY~yDP~~~Vq~aM-~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~---~ 1073 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDPDKKVQDAM-TSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPF---D 1073 (1702)
T ss_pred HhhHHHhhhccCCcHHHHHHH-HHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh---H
Confidence 344444444458998887643 3355544456655555445566677654 77888999999999999876542 2
Q ss_pred ccHHHHHHHHHH----hhccChh---hHHHHHHHHhccc-----cCCHHHHHHHHHHHHHhhc-----CCCHHHHHHHHH
Q 006763 158 ITSHTLSKLLTA----LNECTEW---GQVFILDALSRYK-----AADAREAENIVERVTPRLQ-----HANCAVVLSAVK 220 (632)
Q Consensus 158 l~~~~~~~Ll~~----l~~~~ew---~qi~lL~lL~~y~-----~~~~~~~~~il~~v~~~L~-----~~n~aVv~eaik 220 (632)
-.+..+.++... ..|.-|= .--+..+.|++.+ +.+......++..+.|+|- |.-..|.--+++
T Consensus 1074 ~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~ 1153 (1702)
T KOG0915|consen 1074 QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIG 1153 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHH
Confidence 223333333322 2222111 1123334444332 3344556778888888763 344689999999
Q ss_pred HHHHhhhccCChHHHHHHHHhcccchhhhcc--CchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHH
Q 006763 221 MILQQMELITSTDVVRNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLE 298 (632)
Q Consensus 221 ~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls--~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~ 298 (632)
+++.+... ....++-..-++++.|++..+ .+.-+-|+++|... +-+ +.+..... ..-.+-| -+++++
T Consensus 1154 tl~dl~Ks--sg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~-~e~---ealDt~R~--s~akssp---mmeTi~ 1222 (1702)
T KOG0915|consen 1154 TLMDLAKS--SGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLIN-IET---EALDTLRA--SAAKSSP---MMETIN 1222 (1702)
T ss_pred HHHHHHHh--chhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhh-hHH---HHHHHHHH--hhhcCCc---HHHHHH
Confidence 99987653 344444444456666666665 35578999998832 211 11211000 0011222 247788
Q ss_pred HHHHhcCcccHHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 006763 299 IMIKLASDRNIDQVLLEFKEYATE-VDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVNYVVQEAIIVIK 373 (632)
Q Consensus 299 lL~~L~n~~Ni~~Iv~EL~~yl~~-~d~~~~~~~i~aIg~la~k~~----~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~ 373 (632)
.+..-.+.+-.+++++++.+-++. +.-.-+.-...-|..++.|++ +....++..++..+++.++.+.......+.
T Consensus 1223 ~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG 1302 (1702)
T KOG0915|consen 1223 KCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMG 1302 (1702)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHH
Confidence 888888888888899999888774 343334444445566666654 455667777777778777777777777777
Q ss_pred HHHhh-CcccHHHHHHH-HHHhhccCChhhH--HHHHHHHHhcccCc
Q 006763 374 DIFRR-YPNTYESIIAT-LCESLDTLDEPEA--KASMIWIIGEYAER 416 (632)
Q Consensus 374 ~ilr~-~p~~~~~ii~~-L~~~l~~i~~p~a--~~~~iWiLGEy~~~ 416 (632)
.+++- .|+...+.++. ++.++.+-..+.- .+.++. |+.|+..
T Consensus 1303 ~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~-Ian~s~e 1348 (1702)
T KOG0915|consen 1303 YLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN-IANYSQE 1348 (1702)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhhHH
Confidence 77654 35444444444 4455554333222 233333 6766543
No 95
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.89 E-value=1.8 Score=47.57 Aligned_cols=179 Identities=15% Similarity=0.211 Sum_probs=106.3
Q ss_pred cHHHHHHHHHHhhhhc-CHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHH-hhhchhhHHHHH----HHHHHHHhhC
Q 006763 308 NIDQVLLEFKEYATEV-DVDFVRKAVRAIGRCAIKLERA--AERCISVLLELI-KIKVNYVVQEAI----IVIKDIFRRY 379 (632)
Q Consensus 308 Ni~~Iv~EL~~yl~~~-d~~~~~~~i~aIg~la~k~~~~--~~~~v~~Ll~ll-~~~~~~v~~e~i----~~l~~ilr~~ 379 (632)
+..++++++.+.+... +...+..+.+.++.++.|++.. .+..++.+.+-+ ..........++ ...|-++.++
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 5667999999887654 4555556678899999998654 344555555444 111222222222 2344444444
Q ss_pred cccHHHHHHHHHHhhccCChhhH-HHHHHHHHhcccCccC---CH-----------HHHHHHHhhhCCCCCHHHHHHHHH
Q 006763 380 PNTYESIIATLCESLDTLDEPEA-KASMIWIIGEYAERID---NA-----------DELLESFLESFPEEPAQVQLQLLT 444 (632)
Q Consensus 380 p~~~~~ii~~L~~~l~~i~~p~a-~~~~iWiLGEy~~~i~---~~-----------~~~l~~l~~~f~~e~~~vq~~iLt 444 (632)
.......+..|++.+++-+-... -.+.--+++++.+... ++ ..++..+++.|...+.+.|...|+
T Consensus 266 ~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ 345 (415)
T PF12460_consen 266 HPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLT 345 (415)
T ss_pred CchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHH
Confidence 33455677788887765222222 2333345555433221 11 245667778888877789999999
Q ss_pred HHHHHhhcCCCC----ChHHHHHHHHHhhhcCCCChHHHhhHHHHHHH
Q 006763 445 ATVKLFLKKPTE----GPQQMIQVVLNNATVETDNPDLRDRAYIYWRL 488 (632)
Q Consensus 445 a~~Kl~~~~p~e----~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~L 488 (632)
|+.-+.-..|.+ ...+++.-+++. . +..|.+++--+......
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqs-L-~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQS-L-SLPDADVLLSSLETLKM 391 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHH
Confidence 999998888853 144555555663 3 45777877766655443
No 96
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=2.1 Score=45.27 Aligned_cols=217 Identities=17% Similarity=0.191 Sum_probs=130.4
Q ss_pred CcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHH----HHHHHhhcCCCChHHHhHHHHHhcCCCchhhH---
Q 006763 7 VSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILA----VNTFVKDSQDPNPLIRALAVRTMGCIRVDKIT--- 79 (632)
Q Consensus 7 vs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~----iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~--- 79 (632)
-+.+...++++-.++|...+|-.-=++.++-+....--.|+ +..+..-+.+.|+.+|-.+-.++++|....-.
T Consensus 165 ~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred hccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 34456667777788888888876555555544332211121 23466677899999999999999999765433
Q ss_pred -----HHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhc---cccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcC
Q 006763 80 -----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN---AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (632)
Q Consensus 80 -----~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~---p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~ 151 (632)
+-+++.+..++.|.++-|+--|.+|+..+...- -+.++ .+-++.+.++|++.---.+.+.+..+-.|.-+.
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSPMGPLILASVACIRNISIHP 323 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence 347889999999999999999999887765321 12333 466788889997655444555555554343322
Q ss_pred CCCchhccHHHHHHHHHHhh-ccChhhHHHHHHHHhccccCCHHHHHHH-----HHHHHHhhcCCCHHHHHHHHHHHHH
Q 006763 152 SRPIFEITSHTLSKLLTALN-ECTEWGQVFILDALSRYKAADAREAENI-----VERVTPRLQHANCAVVLSAVKMILQ 224 (632)
Q Consensus 152 ~~~~~~l~~~~~~~Ll~~l~-~~~ew~qi~lL~lL~~y~~~~~~~~~~i-----l~~v~~~L~~~n~aVv~eaik~i~~ 224 (632)
.....-.....++-|++.|. .-+|-.|+.....|..+..........| ++.+..++....-+|.-+..-+|-.
T Consensus 324 lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 324 LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence 11111111122333444443 3467788888888877665433322222 3444455555555665554444443
No 97
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.87 E-value=0.0094 Score=45.48 Aligned_cols=53 Identities=32% Similarity=0.427 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHhhhhccccccc--cchHHHHHHHhcCCChhHHHHHHHHHHHH
Q 006763 95 PYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEI 147 (632)
Q Consensus 95 pyVRK~A~~al~kl~~~~p~~v~~--~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI 147 (632)
|.||+.|+.++..+....++.... ...++.|..+|+|.++.|..+|+.+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 679999999999877666665542 24677888899999999999999888643
No 98
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=7.1 Score=48.37 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=126.6
Q ss_pred hhHHHHHHHHHHHh--cCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHH---HHHhhhchh
Q 006763 290 IYVKMEKLEIMIKL--ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE-RAAERCISVLL---ELIKIKVNY 363 (632)
Q Consensus 290 ~~Ik~~kL~lL~~L--~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~-~~~~~~v~~Ll---~ll~~~~~~ 363 (632)
.+++..--++++.| +.++-+-.|+++|..-+...+.++|.+++..+|++-.... ..++.+-++.. .-+......
T Consensus 236 ~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~ 315 (1266)
T KOG1525|consen 236 SSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVE 315 (1266)
T ss_pred cchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChh
Confidence 44556666677665 4566677788888888888899999999999998765432 11123333333 334445567
Q ss_pred hHHHHHHHHHHHHhhCcccHHHHHHHHHHhhccCChhhHHHHHHHHHhcc--cCc--cCCHHHHHHHHhhhCCCCCHHHH
Q 006763 364 VVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEY--AER--IDNADELLESFLESFPEEPAQVQ 439 (632)
Q Consensus 364 v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy--~~~--i~~~~~~l~~l~~~f~~e~~~vq 439 (632)
|+-+++...++++..+|+..+.....+.-...+. +++.+....-+++.- ... .-.+. ++..+.++..+-...||
T Consensus 316 vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~-D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR 393 (1266)
T KOG1525|consen 316 VRMECVESIKQCLLNNPSIAKASTILLALRERDL-DEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVR 393 (1266)
T ss_pred hhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcC-ChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHH
Confidence 8888999999999999987655544433222222 333332222222221 111 11234 88888888888899999
Q ss_pred HHHHHHHHHHhhcC---CCC-------------------------ChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcC
Q 006763 440 LQLLTATVKLFLKK---PTE-------------------------GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLST 491 (632)
Q Consensus 440 ~~iLta~~Kl~~~~---p~e-------------------------~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~ 491 (632)
.+.+..++++|-+. .++ +.+.++.++|..+. -..+.++|+|-.-.+.++..
T Consensus 394 ~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L-~P~~l~~q~Rmk~l~~~l~~ 472 (1266)
T KOG1525|consen 394 KQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYL-VPYPLSTQERMKHLYQLLAG 472 (1266)
T ss_pred HHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhc
Confidence 99999999998851 110 13355667777654 34677888888887777765
No 99
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.85 E-value=0.15 Score=60.01 Aligned_cols=197 Identities=17% Similarity=0.180 Sum_probs=139.6
Q ss_pred CchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcc-ccccc-cchH-HHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 006763 74 RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVED-RGFL-ESLKDLISDNNPMVVANAVAALAEIEEN 150 (632)
Q Consensus 74 ~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p-~~v~~-~~~~-~~L~~lL~D~d~~Vv~~Al~aL~eI~~~ 150 (632)
.-.++..-+.+.+...+.|+++-=|+.|+-.+.+...-.. +..+. .+++ -.++..+.|.|..|++.|+..|..|+..
T Consensus 246 ~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 246 PRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred chhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 3457777888899999999999999999999999987655 23221 1222 2334456799999999999999999987
Q ss_pred CCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccC
Q 006763 151 SSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (632)
Q Consensus 151 ~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~ 230 (632)
.+..........+..++..+.+--....-.++.++-.+.... -..++++.+...+++.|+.+.-+|...+-.++....
T Consensus 326 lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~--~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 326 LRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST--PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred cchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 765545555566777777777766666666667776665432 245778888889999999999999887776654332
Q ss_pred ChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCc
Q 006763 231 STDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP 272 (632)
Q Consensus 231 ~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p 272 (632)
....-+...+.+++.++...+ ++.++|-.+++.+..+...+.
T Consensus 404 ~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 404 PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 111111222334555556664 688999999999998887654
No 100
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.73 E-value=0.31 Score=53.55 Aligned_cols=226 Identities=14% Similarity=0.233 Sum_probs=107.0
Q ss_pred chHHHHHHHHHHhcCCCCcHHH----HHHHHHHhh-cCCCChHHHhHHHHHhcCCCch----hhHHHHHHHHHhhh-CCC
Q 006763 24 ELKKLVYLYLINYAKSQPDLAI----LAVNTFVKD-SQDPNPLIRALAVRTMGCIRVD----KITEYLCDPLQRCL-KDD 93 (632)
Q Consensus 24 ~~Krl~YLyl~~~~~~~~el~l----L~iNtl~kD-l~~~np~ir~lALr~L~~I~~~----ei~~~l~~~v~~~L-~d~ 93 (632)
..++++.++...+..-+++..+ -.++.+.+. +...++..|-.|++.+|.+.+. +..+.+...+...+ ...
T Consensus 163 ~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~ 242 (415)
T PF12460_consen 163 QQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSE 242 (415)
T ss_pred ccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccC
Confidence 4666776666666655544321 122333333 3344577777777777776554 22333333333333 333
Q ss_pred ChHHHHHHHHHH-----HHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchh-ccHHHHHHHH
Q 006763 94 DPYVRKTAAICV-----AKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLL 167 (632)
Q Consensus 94 ~pyVRK~A~~al-----~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~-l~~~~~~~Ll 167 (632)
.+-.|..++..+ +-+.|.+|.... +.+.+-++|.|. .+-..|..+|.-+....+. ... -.+..++-|
T Consensus 243 ~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~---~~~~L~~lL~~~--~~g~~aA~~f~il~~d~~~-~l~~~~~a~vklL- 315 (415)
T PF12460_consen 243 DSELRPQALEILIWITKALVMRGHPLATE---LLDKLLELLSSP--ELGQQAAKAFGILLSDSDD-VLNKENHANVKLL- 315 (415)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCCchHHH---HHHHHHHHhCCh--hhHHHHHHHHhhHhcCcHH-hcCccccchhhhH-
Confidence 344444444433 223445555443 667777777663 3333333344333322110 000 011111111
Q ss_pred HHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchh
Q 006763 168 TALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLV 247 (632)
Q Consensus 168 ~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~ 247 (632)
|-|- -...++..+....+.++..+.-.....+.+++++++. +.+..-...+.+.|+
T Consensus 316 --------ykQR---------------~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~-~vl~~~l~~LlPLLl 371 (415)
T PF12460_consen 316 --------YKQR---------------FFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK-SVLLPELPTLLPLLL 371 (415)
T ss_pred --------HhHH---------------HHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHHH
Confidence 1110 0112222222233333322222222222223333332 233333334555555
Q ss_pred hhcc-CchhHHHHHHHHHHHHHhhCccchhcccc
Q 006763 248 TLLS-AEPEIQYVALRNINLIVQRRPTILAHEIK 280 (632)
Q Consensus 248 ~Lls-~~~niryvaL~~l~~i~~~~p~~~~~~~~ 280 (632)
.-++ .+++++..+|+++..++...|+++.+|+.
T Consensus 372 qsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~ 405 (415)
T PF12460_consen 372 QSLSLPDADVLLSSLETLKMILEEAPELISEHLS 405 (415)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 5554 67889999999999999999999988875
No 101
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.71 E-value=1.4 Score=45.37 Aligned_cols=164 Identities=13% Similarity=0.179 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhcc--CchhHHHHHHHHHHHH
Q 006763 192 DAREAENIVERVTPRL--QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS--AEPEIQYVALRNINLI 267 (632)
Q Consensus 192 ~~~~~~~il~~v~~~L--~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls--~~~niryvaL~~l~~i 267 (632)
..+....+++.+.... ++-..++.+.+.+++-.++.. ..+.++.+....+..++.+.. +||.--.++.+.+..+
T Consensus 74 ~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 74 SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVI 151 (262)
T ss_pred ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 3444556666554322 223346666666666655432 222333333333344455553 6786666667777777
Q ss_pred HhhCcc--chhcccceeEe--------ccCCchhHHHHHH--HHHHHhcC-cccHHHHHHHHHHhhhhcCHHHHHHHHHH
Q 006763 268 VQRRPT--ILAHEIKVFFC--------KYNDPIYVKMEKL--EIMIKLAS-DRNIDQVLLEFKEYATEVDVDFVRKAVRA 334 (632)
Q Consensus 268 ~~~~p~--~~~~~~~~f~~--------l~~dd~~Ik~~kL--~lL~~L~n-~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~a 334 (632)
.+.++. ..+...++++| -.+||..|.+.-| .+.--++. +.=.+..+.-|++=+.......+.++.+.
T Consensus 152 ~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~t 231 (262)
T PF14500_consen 152 LQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQT 231 (262)
T ss_pred HHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 776652 11111222222 3456655544444 33333443 33345667777777777777788999999
Q ss_pred HHHHHHhhhhh-HHHHHHHHHHHH
Q 006763 335 IGRCAIKLERA-AERCISVLLELI 357 (632)
Q Consensus 335 Ig~la~k~~~~-~~~~v~~Ll~ll 357 (632)
+..|+.+|+.. ...++..+.+-+
T Consensus 232 L~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 232 LKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHH
Confidence 99999998643 344444444443
No 102
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=7.2 Score=47.12 Aligned_cols=279 Identities=16% Similarity=0.214 Sum_probs=153.1
Q ss_pred ChHHHHHHHHHHH-HhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHH-HhcCCCCchhccHHHHHHHHHH--
Q 006763 94 DPYVRKTAAICVA-KLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI-EENSSRPIFEITSHTLSKLLTA-- 169 (632)
Q Consensus 94 ~pyVRK~A~~al~-kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI-~~~~~~~~~~l~~~~~~~Ll~~-- 169 (632)
..-.|++-...+. ..+...|..+.. .+.+.+..+..+.|.++..--...+..+ ..-.+ ......+.++.+.
T Consensus 586 ~l~~~~~~L~~i~~~~~~~t~~dv~~-~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~----~~~e~~vs~l~~v~~ 660 (1176)
T KOG1248|consen 586 ILASRSTVLEIIRVDYFTVTPTDVVG-SLKDSAGELASDLDESVASFKTLSLLDLLIALAP----VQTESQVSKLFTVDP 660 (1176)
T ss_pred cHHHHHHHHHHHHHHHhhcccHHHHH-HHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhc----cccchhHHHHHHhhH
Confidence 3445666666666 344455544432 4667777777777655543322222222 21111 0111223333322
Q ss_pred -hhcc-ChhhHHHHHHHHhccccCC------HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHh
Q 006763 170 -LNEC-TEWGQVFILDALSRYKAAD------AREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKK 241 (632)
Q Consensus 170 -l~~~-~ew~qi~lL~lL~~y~~~~------~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~ 241 (632)
...+ +.-.|-+.-++|....+.. .....++.|.+.+-.++....+..+..+++-.+++..+ .+.. .+..+
T Consensus 661 ~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-~e~~-~~i~k 738 (1176)
T KOG1248|consen 661 EFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-AEHC-DLIPK 738 (1176)
T ss_pred HhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-HHHH-HHHHH
Confidence 1223 5667888777777665542 23456778888888888777766666666555443222 1111 22222
Q ss_pred cccchhhhcc-CchhHHHHHHHHHHHHH--hhC------c--cchhcccceeEe-ccCCchhHHHH---HHHHHH----H
Q 006763 242 MAPPLVTLLS-AEPEIQYVALRNINLIV--QRR------P--TILAHEIKVFFC-KYNDPIYVKME---KLEIMI----K 302 (632)
Q Consensus 242 ~~~~L~~Lls-~~~niryvaL~~l~~i~--~~~------p--~~~~~~~~~f~~-l~~dd~~Ik~~---kL~lL~----~ 302 (632)
.++-++-++. .+...|-.+..+|..|. +.+ | ..++.++.+++- +-.|..-.+.. ++..++ .
T Consensus 739 ~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 739 LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 2222111222 23456677777777776 322 2 233444443322 22332222222 222211 1
Q ss_pred hcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHhhhchhhHHHHHHHHHHHHh
Q 006763 303 LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA-----AERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (632)
Q Consensus 303 L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~-----~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr 377 (632)
..+...+..+++.+.-|+.....++++.+|..|..+..++|.. .+..+..++.++.....++...+-..+..++|
T Consensus 819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3456667788888889999999999999999999999988753 23455666666666666777777777777887
Q ss_pred hC
Q 006763 378 RY 379 (632)
Q Consensus 378 ~~ 379 (632)
++
T Consensus 899 kf 900 (1176)
T KOG1248|consen 899 KF 900 (1176)
T ss_pred Hh
Confidence 75
No 103
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=1.6 Score=50.69 Aligned_cols=189 Identities=14% Similarity=0.108 Sum_probs=118.4
Q ss_pred HHHHHhhcCCC-ChHHHhHHHHHhcCC---Cchh-----hHHHHHHHHHhhhCC-CChHHHHHHHHHHHHhhhhcccccc
Q 006763 48 VNTFVKDSQDP-NPLIRALAVRTMGCI---RVDK-----ITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELVE 117 (632)
Q Consensus 48 iNtl~kDl~~~-np~ir~lALr~L~~I---~~~e-----i~~~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~~~p~~v~ 117 (632)
.+.|..-++.. +|..+--||.-||.+ ++++ .++.++|.+..+|+| .++-+---|+-|+..++...|..+.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 45666666654 888888899888864 4443 456889999999999 7788999999999999999997533
Q ss_pred ---ccchHHHHHHHh-cCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccc----
Q 006763 118 ---DRGFLESLKDLI-SDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYK---- 189 (632)
Q Consensus 118 ---~~~~~~~L~~lL-~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~---- 189 (632)
+.+-++.+..-| .=.=..|.=.++.+|..|....+..+++- ..+..-|..+.=++--.|-..|-+.+..+
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~A--G~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQA--GALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345566655433 32233456678888888877655432221 12333333343344556666666666554
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhcc-CChHHHHHH
Q 006763 190 AADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELI-TSTDVVRNL 238 (632)
Q Consensus 190 ~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i-~~~~~~~~~ 238 (632)
+++....-+.+..+.++|++.+.=++-.+.-+++++.... ..++.++++
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql 376 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQL 376 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHH
Confidence 3333333344556677888777655555555555544322 246666665
No 104
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.53 E-value=5.3 Score=44.62 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=73.1
Q ss_pred hhHHHHHhhcC--CC-----cchHHHHHHHHHHhcCCCCcHHHH-HHHHHHhhcCCCChHHHhHHHHHhcCCCc------
Q 006763 10 LFTDVVNCMQT--EN-----LELKKLVYLYLINYAKSQPDLAIL-AVNTFVKDSQDPNPLIRALAVRTMGCIRV------ 75 (632)
Q Consensus 10 lf~~vi~l~~s--~d-----~~~Krl~YLyl~~~~~~~~el~lL-~iNtl~kDl~~~np~ir~lALr~L~~I~~------ 75 (632)
..|++++++.. +| -..-+-+--.+..|+....|..+- +--.+...++++|-.-|-.|.-++|++..
T Consensus 322 vlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~ 401 (858)
T COG5215 322 VLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDC 401 (858)
T ss_pred HHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHH
Confidence 34556665533 22 223333444444555544443222 22334678899999999999999999843
Q ss_pred -hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccccc
Q 006763 76 -DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (632)
Q Consensus 76 -~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~ 117 (632)
..+++..+|.|....+|+.-.|+.+++.|++++-..-|+.+.
T Consensus 402 lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~ 444 (858)
T COG5215 402 LTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIIS 444 (858)
T ss_pred HHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcC
Confidence 256667778888888999999999999999999887776655
No 105
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=8.3 Score=46.61 Aligned_cols=208 Identities=13% Similarity=0.179 Sum_probs=129.5
Q ss_pred ChhhHHHHHHHHhccccCC-HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhc-c
Q 006763 174 TEWGQVFILDALSRYKAAD-AREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-S 251 (632)
Q Consensus 174 ~ew~qi~lL~lL~~y~~~~-~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll-s 251 (632)
..+.+..+|+++....+-- ......+....-...+++++.|...+-+++-.+....+-.....+...-+-+.|..-. +
T Consensus 629 ~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs 708 (1176)
T KOG1248|consen 629 ASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQS 708 (1176)
T ss_pred hhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhc
Confidence 4577778888877655432 2233343323333456678999999998887765431111222232222333333222 3
Q ss_pred CchhHHHHHHHHHHHHHhhCc----cchhcccc-eeEeccCCchhHHHHHHHHHHHhcC---------cccHHHHHHHHH
Q 006763 252 AEPEIQYVALRNINLIVQRRP----TILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLAS---------DRNIDQVLLEFK 317 (632)
Q Consensus 252 ~~~niryvaL~~l~~i~~~~p----~~~~~~~~-~f~~l~~dd~~Ik~~kL~lL~~L~n---------~~Ni~~Iv~EL~ 317 (632)
...-.|+-.|.++..|.+..+ +++...+. ++.+..+-+.+-|+-|.++|+.|++ +. ...+++|++
T Consensus 709 ~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl 787 (1176)
T KOG1248|consen 709 SSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFL 787 (1176)
T ss_pred cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHH
Confidence 456789999999999998888 23323332 3445566678899999999999982 22 345666666
Q ss_pred Hhhhh---cCHHHHHHH-HHHHHHHHHhhh-----hhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCccc
Q 006763 318 EYATE---VDVDFVRKA-VRAIGRCAIKLE-----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT 382 (632)
Q Consensus 318 ~yl~~---~d~~~~~~~-i~aIg~la~k~~-----~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~ 382 (632)
.-+.. .|....... |-+++.+...+. .....+++.+.-+|..+...+...+|..++-++...|+.
T Consensus 788 ~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 788 SIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH
Confidence 54332 233333333 777777777663 234566777777788888889988998888888888853
No 106
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.47 E-value=5.9 Score=46.48 Aligned_cols=297 Identities=18% Similarity=0.235 Sum_probs=154.3
Q ss_pred hhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHhhhh---ccccccccchHHHH-HHHhcCCChhHHHHHHHHHHHHHhc
Q 006763 76 DKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI---NAELVEDRGFLESL-KDLISDNNPMVVANAVAALAEIEEN 150 (632)
Q Consensus 76 ~ei~~~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~~---~p~~v~~~~~~~~L-~~lL~D~d~~Vv~~Al~aL~eI~~~ 150 (632)
.++...+...+...+.+ ..|..--+|..++.|+... +|+... .|.+.. ..+..|.-+.+...|+.+++..++
T Consensus 444 dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~- 520 (1005)
T KOG2274|consen 444 DDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK- 520 (1005)
T ss_pred HHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC-
Confidence 45556666667777765 6777666999999987664 444443 244433 344558888899999999998873
Q ss_pred CCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHH-----hhc-CCCHHHHHHHHHHHH-
Q 006763 151 SSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP-----RLQ-HANCAVVLSAVKMIL- 223 (632)
Q Consensus 151 ~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~-----~L~-~~n~aVv~eaik~i~- 223 (632)
.+....+.+..+.-|.....+.++=.-..+|+.|...+.-|++.+...=+.+.| +++ +.++ ++.+-+.-++
T Consensus 521 -~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP-~V~~~~qd~f~ 598 (1005)
T KOG2274|consen 521 -VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDP-QVASLAQDLFE 598 (1005)
T ss_pred -ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 233344555555555555555666556667777765555555444332222322 233 3445 3332222222
Q ss_pred HhhhccCChHHHHHHHHhcccchhhhcc-C----chhHHHHHHHHHHHHHhhCccchhccc------ceeEe-ccCCchh
Q 006763 224 QQMELITSTDVVRNLCKKMAPPLVTLLS-A----EPEIQYVALRNINLIVQRRPTILAHEI------KVFFC-KYNDPIY 291 (632)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~~~~L~~Lls-~----~~niryvaL~~l~~i~~~~p~~~~~~~------~~f~~-l~~dd~~ 291 (632)
.+.. + ..-......+.++.|+..+. . .+.....++..|..++...|.-+.+.+ .+..| +.+||..
T Consensus 599 el~q-~--~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~ 675 (1005)
T KOG2274|consen 599 ELLQ-I--AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHE 675 (1005)
T ss_pred HHHH-H--HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChH
Confidence 2211 0 00111233466777777773 2 368999999999988887764332211 11223 4556654
Q ss_pred HHHHHHHHHHHhcCc-------------ccHHHHHHHHHHhhh----hcCHHHHHHHH-HHHHHHHHhhhhhHHHHHHHH
Q 006763 292 VKMEKLEIMIKLASD-------------RNIDQVLLEFKEYAT----EVDVDFVRKAV-RAIGRCAIKLERAAERCISVL 353 (632)
Q Consensus 292 Ik~~kL~lL~~L~n~-------------~Ni~~Iv~EL~~yl~----~~d~~~~~~~i-~aIg~la~k~~~~~~~~v~~L 353 (632)
.=..+=|.|-.+.+. .|...|++-+..-+. +.-..|+-.+| .-|.+.+....+..+.++..+
T Consensus 676 tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Av 755 (1005)
T KOG2274|consen 676 TLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAV 755 (1005)
T ss_pred HHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 444455555444432 343333333322221 11112333333 233344444444444555544
Q ss_pred HHHHhh-hchhhHHHHHHHHHHHHhhCc
Q 006763 354 LELIKI-KVNYVVQEAIIVIKDIFRRYP 380 (632)
Q Consensus 354 l~ll~~-~~~~v~~e~i~~l~~ilr~~p 380 (632)
+.-+.. ..-.+.+..+.++..++-..+
T Consensus 756 isrmq~ae~lsviQsLi~VfahL~~t~~ 783 (1005)
T KOG2274|consen 756 ISRLQQAETLSVIQSLIMVFAHLVHTDL 783 (1005)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhCCH
Confidence 333332 233455666667776665443
No 107
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=95.28 E-value=0.77 Score=53.73 Aligned_cols=257 Identities=15% Similarity=0.146 Sum_probs=165.8
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCC--cHHHHHHHHHHhhcCCCChHHHhHH-------HHHhcCCCchhh
Q 006763 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQP--DLAILAVNTFVKDSQDPNPLIRALA-------VRTMGCIRVDKI 78 (632)
Q Consensus 8 s~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~--el~lL~iNtl~kDl~~~np~ir~lA-------Lr~L~~I~~~ei 78 (632)
+..++.+-.++.+++...|...-..+......-| ...-....-+..-+++..+.||..- ...++.++....
T Consensus 397 ~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~ 476 (759)
T KOG0211|consen 397 SSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV 476 (759)
T ss_pred hhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh
Confidence 4456777778888888877765555544433211 1111111223333455555555444 456666777888
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhc
Q 006763 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (632)
Q Consensus 79 ~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l 158 (632)
.+.+.|.+..+..|.++-||.+..-.+..+....-..+-++.+.+.+..-+.|....+.-+|...+..+....+ ..|..
T Consensus 477 s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~ 555 (759)
T KOG0211|consen 477 SNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWAR 555 (759)
T ss_pred hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhH
Confidence 88999999999999999999998888877665433222222455556666677777888888888888776655 34543
Q ss_pred cHHHHHHHHHHhhccChhhHHHHHHHHhccccC--CHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHH
Q 006763 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKAA--DAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVR 236 (632)
Q Consensus 159 ~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~--~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~ 236 (632)
+..+.+++....+.+=|....++..+..+.+- .+-..++++..+.....+..+.|.+.++|.+-.+.+.+ +.+..+
T Consensus 556 -~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L-~~~~~~ 633 (759)
T KOG0211|consen 556 -LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL-DESVRD 633 (759)
T ss_pred -HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc-chHHHH
Confidence 33567777776665566677777776654432 23334567777777788899999999999988876655 333343
Q ss_pred HHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhh
Q 006763 237 NLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQR 270 (632)
Q Consensus 237 ~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~ 270 (632)
. .+.+.+.+|.+ .+.++||.+......+...
T Consensus 634 ~---~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 634 E---EVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred H---HHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 3 23444556664 5779999999888877653
No 108
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=1.8 Score=54.21 Aligned_cols=126 Identities=19% Similarity=0.225 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC-----chhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccccc
Q 006763 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (632)
Q Consensus 43 l~lL~iNtl~kDl~~~np~ir~lALr~L~~I~-----~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~ 117 (632)
+--+..--+..++..+||..|+.|-.+++.+. .+-+.+..-..++++-.-.+|+-|---.++++.+++..-....
T Consensus 873 v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 873 VRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 33444455678899999999999888888763 2233333333444544557777777777778888776655555
Q ss_pred ccchHH---HHHHHhcCCCh-hHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHH
Q 006763 118 DRGFLE---SLKDLISDNNP-MVVANAVAALAEIEENSSRPIFEITSHTLSKLLT 168 (632)
Q Consensus 118 ~~~~~~---~L~~lL~D~d~-~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~ 168 (632)
...+.. .+..+-.|+++ .|...++.++..|....++-++.+..+.+.-++.
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~ 1007 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLK 1007 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHH
Confidence 444444 66777778765 8899999999998877665556555444433333
No 109
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.06 E-value=8.4 Score=44.17 Aligned_cols=93 Identities=23% Similarity=0.333 Sum_probs=64.7
Q ss_pred HHHhhcCCCChHHHhHHHHHhcCCC------chhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHH
Q 006763 50 TFVKDSQDPNPLIRALAVRTMGCIR------VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLE 123 (632)
Q Consensus 50 tl~kDl~~~np~ir~lALr~L~~I~------~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~ 123 (632)
.+.|-..+++--||=..+..++.+. ..++..-+...+..-+.|..|.||.-|+.|+.|+-. +|.--+ -...+
T Consensus 89 hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-d~~dee-~~v~n 166 (892)
T KOG2025|consen 89 HLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-DPKDEE-CPVVN 166 (892)
T ss_pred HHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-CCCCCc-ccHHH
Confidence 3456666777666655555555443 356677777778888899999999999999999763 221111 13567
Q ss_pred HHHHHhc-CCChhHHHHHHHHH
Q 006763 124 SLKDLIS-DNNPMVVANAVAAL 144 (632)
Q Consensus 124 ~L~~lL~-D~d~~Vv~~Al~aL 144 (632)
.+..+++ |+++.|..+|+.-+
T Consensus 167 ~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 167 LLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred HHHHHHhcCCcHHHHHHHHHhh
Confidence 7788775 99999999886543
No 110
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.04 E-value=0.091 Score=44.92 Aligned_cols=69 Identities=26% Similarity=0.252 Sum_probs=55.6
Q ss_pred HHHHHhhcCCCChHHHhHHHHHhcCCCc-----hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccc
Q 006763 48 VNTFVKDSQDPNPLIRALAVRTMGCIRV-----DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV 116 (632)
Q Consensus 48 iNtl~kDl~~~np~ir~lALr~L~~I~~-----~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v 116 (632)
-+...++++|+.+-+||-||..|+++.. ..-++.+..-....+.|+++||==.|+-|+.-+...+|+.+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~v 78 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEV 78 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHH
Confidence 3556788999999999999999988732 23456777778888899999999999999999988888743
No 111
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.99 E-value=1.1 Score=46.98 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=57.2
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCC
Q 006763 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (632)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~ 152 (632)
.+-.-|..++.+.++.||+.|+.|++-+.-++.+...+ .+..+...++..+..|...|+.++.++....+
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~--~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE--HLPLFLQALQKDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 34455678889999999999999999999999988774 67777777766688999999999999876544
No 112
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.69 E-value=3.3 Score=44.84 Aligned_cols=206 Identities=15% Similarity=0.217 Sum_probs=138.6
Q ss_pred hhccCchhHHHHHHHHHHHHHhhCcc---chhcccceeE--eccCCc--hhHHHHHHHHHHHhcCcc-cH----HHHHHH
Q 006763 248 TLLSAEPEIQYVALRNINLIVQRRPT---ILAHEIKVFF--CKYNDP--IYVKMEKLEIMIKLASDR-NI----DQVLLE 315 (632)
Q Consensus 248 ~Lls~~~niryvaL~~l~~i~~~~p~---~~~~~~~~f~--~l~~dd--~~Ik~~kL~lL~~L~n~~-Ni----~~Iv~E 315 (632)
.+++.+.++|-.++|.+..+...... +.+-|+..|. |+..|. ..=|..||.++-++.+-. .. ..|+.-
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvra 112 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRA 112 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence 35676799999999999888765432 2344565553 333332 334778999988877652 22 468888
Q ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHH-----HH
Q 006763 316 FKEYATEVDVDFVRKAVRAIGRCAIKLERAAERC--ISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESI-----IA 388 (632)
Q Consensus 316 L~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~--v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~i-----i~ 388 (632)
+..-+.+.++.+++-++..+++++...|.-.-+| +.++++.+..+.-.+.+.++.++..++. .|+.+.++ ++
T Consensus 113 lvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~ 191 (371)
T PF14664_consen 113 LVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLE 191 (371)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHH
Confidence 8888888999999999999999999988766555 7788887776333345555567777763 56655433 22
Q ss_pred HHHHhhccC-----C-hh------hHHHHHHHHHhcccCccC---CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcC
Q 006763 389 TLCESLDTL-----D-EP------EAKASMIWIIGEYAERID---NADELLESFLESFPEEPAQVQLQLLTATVKLFLKK 453 (632)
Q Consensus 389 ~L~~~l~~i-----~-~p------~a~~~~iWiLGEy~~~i~---~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~ 453 (632)
.+..-+-+. . +. .++.++.-++--|...+- +...-++.+++.+....+++|..+|..+..++--.
T Consensus 192 ~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 192 SLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 333322222 1 11 124566677777766542 22256888888888888999999999999997644
Q ss_pred C
Q 006763 454 P 454 (632)
Q Consensus 454 p 454 (632)
+
T Consensus 272 ~ 272 (371)
T PF14664_consen 272 P 272 (371)
T ss_pred C
Confidence 3
No 113
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.61 E-value=8 Score=41.76 Aligned_cols=354 Identities=14% Similarity=0.171 Sum_probs=180.3
Q ss_pred CCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhH
Q 006763 57 DPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (632)
Q Consensus 57 ~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~V 136 (632)
..|+.....-+..|+.+..++.++++..-+-..|......++ +.+.+..++...+ |... -.+|.+.|...
T Consensus 61 ~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~------lf~~~a~~~k~~~---~~~f-l~ll~r~d~~i 130 (442)
T KOG2759|consen 61 ANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD------LFHDYAHKLKRTE---WLSF-LNLLNRQDTFI 130 (442)
T ss_pred cccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH------HHHHHHHhhhccc---hHHH-HHHHhcCChHH
Confidence 346677788888999999999999999988888877554332 3344444443332 3333 34556667666
Q ss_pred HHHHHHHHHHHHhcCC----CCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHH-HHH---HHHHHHHHhh-
Q 006763 137 VANAVAALAEIEENSS----RPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAR-EAE---NIVERVTPRL- 207 (632)
Q Consensus 137 v~~Al~aL~eI~~~~~----~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~-~~~---~il~~v~~~L- 207 (632)
+.-+...+..+..... ...+.+....+..+++. ...+...++ ..++|+.+..-++- .+. +-...+...+
T Consensus 131 v~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~-~~~~~~~~~-~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~ 208 (442)
T KOG2759|consen 131 VEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQS-STNNDYIQF-AARCLQTLLRVDEYRYAFVIADGVSLLIRILA 208 (442)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc-cCCCchHHH-HHHHHHHHhcCcchhheeeecCcchhhHHHHh
Confidence 5534444444433221 11122222222222222 122333332 33444443322111 000 1112222333
Q ss_pred -cCCCHHHHHHHHHHHHHhhhccCChHHHHHHHH--hcccchhhhccC--chhHHHHHHHHHHHHHhhCccchhccccee
Q 006763 208 -QHANCAVVLSAVKMILQQMELITSTDVVRNLCK--KMAPPLVTLLSA--EPEIQYVALRNINLIVQRRPTILAHEIKVF 282 (632)
Q Consensus 208 -~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~--~~~~~L~~Lls~--~~niryvaL~~l~~i~~~~p~~~~~~~~~f 282 (632)
.+.+-=+.|+.+-||-.+. . ++...+.+ + ++++.|..+++. ..-+--+++..+..++.+
T Consensus 209 s~~~~~QlQYqsifciWlLt--F-n~~~ae~~-~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k------------ 272 (442)
T KOG2759|consen 209 STKCGFQLQYQSIFCIWLLT--F-NPHAAEKL-KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK------------ 272 (442)
T ss_pred ccCcchhHHHHHHHHHHHhh--c-CHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------
Confidence 3345567788777776542 1 34333221 1 223333444431 122333344444444433
Q ss_pred EeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhh--hhHHHHHHHH-HHHHhh
Q 006763 283 FCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE--RAAERCISVL-LELIKI 359 (632)
Q Consensus 283 ~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~--~~~~~~v~~L-l~ll~~ 359 (632)
.++.+.|+.....+.. + ++...++-|.+ -.-.|++++.++-.--..+...+. ...+.|..-+ ...|.-
T Consensus 273 ----~~~~~~~k~~~~~mv~-~---~v~k~l~~L~~-rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~W 343 (442)
T KOG2759|consen 273 ----GPDRETKKDIASQMVL-C---KVLKTLQSLEE-RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEW 343 (442)
T ss_pred ----CchhhHHHHHHHHHHh-c---CchHHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCC
Confidence 2334444433222211 1 23333333332 122466655444332222322221 1233444332 334444
Q ss_pred hchhhHHHHHHH-HHHHHhhCcccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCccCCHHHHHHHH------hhhCC
Q 006763 360 KVNYVVQEAIIV-IKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESF------LESFP 432 (632)
Q Consensus 360 ~~~~v~~e~i~~-l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~~~~~l~~l------~~~f~ 432 (632)
+..|.....|.- ...+ +.+. -.++..|.+.|+.-.+|...+.++.=||||..+.+....+++.+ .+-..
T Consensus 344 SP~Hk~e~FW~eNa~rl---nenn-yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Lln 419 (442)
T KOG2759|consen 344 SPVHKSEKFWRENADRL---NENN-YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLN 419 (442)
T ss_pred CccccccchHHHhHHHH---hhcc-HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhc
Confidence 555666667752 2222 2222 35788889999988889999999999999998887766666543 45567
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 006763 433 EEPAQVQLQLLTATVKLFL 451 (632)
Q Consensus 433 ~e~~~vq~~iLta~~Kl~~ 451 (632)
.++++||...|.|+-|+..
T Consensus 420 h~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 420 HEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CCCchHHHHHHHHHHHHHh
Confidence 8899999999999988854
No 114
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=7.2 Score=40.77 Aligned_cols=149 Identities=18% Similarity=0.277 Sum_probs=90.1
Q ss_pred chhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcc-c------cccccchHHHHHHHhcCCChhHHHHHHHHHHHH
Q 006763 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-E------LVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (632)
Q Consensus 75 ~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p-~------~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI 147 (632)
...+++.+.+.++++|.+++..|+--|+-.+.++..-+. . .+.+.++.+.+..++...|-.|.-+|+-.+..|
T Consensus 76 gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikri 155 (524)
T KOG4413|consen 76 GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRI 155 (524)
T ss_pred chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 346677888889999999999998888888888776443 1 122345666677777778888888888877777
Q ss_pred HhcCCC--Cchh---ccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHH-----HHHHHHHHhhcC-CCHHHHH
Q 006763 148 EENSSR--PIFE---ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQH-ANCAVVL 216 (632)
Q Consensus 148 ~~~~~~--~~~~---l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~-----~il~~v~~~L~~-~n~aVv~ 216 (632)
..-... .+|. +..- ++.+.-..|+....+.++.++-....-+++.+. -+++.+..-++- .+.-|..
T Consensus 156 alfpaaleaiFeSellDdl---hlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVia 232 (524)
T KOG4413|consen 156 ALFPAALEAIFESELLDDL---HLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIA 232 (524)
T ss_pred HhcHHHHHHhcccccCChH---HHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehh
Confidence 532110 0010 0011 112222357788888888887665544443332 234444444443 5567777
Q ss_pred HHHHHHHHhh
Q 006763 217 SAVKMILQQM 226 (632)
Q Consensus 217 eaik~i~~~~ 226 (632)
.|+.....+.
T Consensus 233 nciElvteLa 242 (524)
T KOG4413|consen 233 NCIELVTELA 242 (524)
T ss_pred hHHHHHHHHH
Confidence 7777766543
No 115
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.30 E-value=0.16 Score=58.19 Aligned_cols=120 Identities=17% Similarity=0.151 Sum_probs=85.5
Q ss_pred CcchHHHHHHHHHHhcC----CCC--------cHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhh
Q 006763 22 NLELKKLVYLYLINYAK----SQP--------DLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRC 89 (632)
Q Consensus 22 d~~~Krl~YLyl~~~~~----~~~--------el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~ 89 (632)
+..++.-+.|.+..+.+ ..+ ++.--+.+-+.+..+..+...+-++|++||+++.+..+..+.+.+. +
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~ 488 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-G 488 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-C
Confidence 34455556666655443 111 2222233444455556777888999999999999999999888886 3
Q ss_pred hCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhc--CCChhHHHHHHHHHHHH
Q 006763 90 LKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS--DNNPMVVANAVAALAEI 147 (632)
Q Consensus 90 L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~--D~d~~Vv~~Al~aL~eI 147 (632)
-...++++|..|+.|+-++-..+|+.+. +.+...+. +.++.|..+|+.+|.+-
T Consensus 489 ~~~~~~~iR~~Av~Alr~~a~~~p~~v~-----~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 489 AEPLSTFIRLAAILALRNLAKRDPRKVQ-----EVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCchHHH-----HHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 4557899999999999999888998775 45555554 46788998888888764
No 116
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.06 E-value=1.4 Score=52.24 Aligned_cols=136 Identities=25% Similarity=0.323 Sum_probs=94.3
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhh---------cCC---CChHHHhHHHHHhcCCCch-
Q 006763 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKD---------SQD---PNPLIRALAVRTMGCIRVD- 76 (632)
Q Consensus 10 lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kD---------l~~---~np~ir~lALr~L~~I~~~- 76 (632)
.||.|+|+++|+-.++|-+.-..+..++..++..-. -|.|| |.+ =++.-|++|--.|+.|...
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~----dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA----DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH----HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 599999999999999998744444444333333211 23344 222 2457888888888876321
Q ss_pred -----h-hHHHHHHHHHhhhCC-CChHHHHHHHHHHHHhhhhcccc----ccccchHHHHHHHhcCCChhHHHHHHHHHH
Q 006763 77 -----K-ITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAEL----VEDRGFLESLKDLISDNNPMVVANAVAALA 145 (632)
Q Consensus 77 -----e-i~~~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~~~p~~----v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~ 145 (632)
+ +-..++..-...++| +.|..|.-.++|+.+++.-+++. .+ ..-.++|..+|.|.-|.|.++|+.||.
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 1 111334444555666 58999999999999999877653 22 245689999999999999999999998
Q ss_pred HHHhc
Q 006763 146 EIEEN 150 (632)
Q Consensus 146 eI~~~ 150 (632)
....+
T Consensus 668 tfl~~ 672 (1387)
T KOG1517|consen 668 TFLSN 672 (1387)
T ss_pred HHhcc
Confidence 87654
No 117
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.90 E-value=16 Score=42.39 Aligned_cols=14 Identities=7% Similarity=0.000 Sum_probs=8.9
Q ss_pred hHHHhhHHHHHHHh
Q 006763 476 PDLRDRAYIYWRLL 489 (632)
Q Consensus 476 ~dvrdRA~~y~~LL 489 (632)
-+.+++|.+|..=+
T Consensus 470 eeseqkA~e~~kk~ 483 (1102)
T KOG1924|consen 470 EESEQKAAELEKKF 483 (1102)
T ss_pred HHHHHHHHHHHHHH
Confidence 46777777765543
No 118
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.36 E-value=2.9 Score=46.70 Aligned_cols=138 Identities=22% Similarity=0.251 Sum_probs=82.0
Q ss_pred hHHHHHHHhc-CCC---hhHHHHHHHHHHH-HHhcCCCCchhccHHHHHHHHHHhhccChh---hHHHHHHHHhccc-cC
Q 006763 121 FLESLKDLIS-DNN---PMVVANAVAALAE-IEENSSRPIFEITSHTLSKLLTALNECTEW---GQVFILDALSRYK-AA 191 (632)
Q Consensus 121 ~~~~L~~lL~-D~d---~~Vv~~Al~aL~e-I~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew---~qi~lL~lL~~y~-~~ 191 (632)
|...+...|. .++ +.-+..-+..+.+ ..+++| ...++..+.++++++-+...+-- -.+.||..+.... +-
T Consensus 47 flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dp-eg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI 125 (885)
T COG5218 47 FLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDP-EGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI 125 (885)
T ss_pred HHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCCh-hhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH
Confidence 4444444443 333 4444444555554 333333 22566777888888876544433 3344444444333 33
Q ss_pred CHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccC--chhHHHHHHHHHH
Q 006763 192 DAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA--EPEIQYVALRNIN 265 (632)
Q Consensus 192 ~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls~--~~niryvaL~~l~ 265 (632)
++..+..+++.+..++-...++|..||++++.++...-.+++- ++...|..++.. +.++|-.||-+|.
T Consensus 126 De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen------~~~n~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 126 DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN------RIVNLLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH------HHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence 4445567788888888899999999999999987542223332 233445566644 3489999987774
No 119
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.12 E-value=0.25 Score=42.64 Aligned_cols=57 Identities=19% Similarity=0.137 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhhhccccccc--cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCC
Q 006763 97 VRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (632)
Q Consensus 97 VRK~A~~al~kl~~~~p~~v~~--~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~ 153 (632)
-||-+.+|+..+..--++.+.. ..+++.+-.++.|+|+.|...|+-+|+.|.+...+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~ 60 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG 60 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3888888888876554444432 24566677788999999999999999999866543
No 120
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=26 Score=42.21 Aligned_cols=429 Identities=14% Similarity=0.167 Sum_probs=218.0
Q ss_pred CCCCcchhHHHHH----hhcCCCcchHHHHHHHHHHhcCC-CCcHHHHHHHHHHh---hcCCCCh-HHHhHHHHHhc--C
Q 006763 4 GKDVSSLFTDVVN----CMQTENLELKKLVYLYLINYAKS-QPDLAILAVNTFVK---DSQDPNP-LIRALAVRTMG--C 72 (632)
Q Consensus 4 G~Dvs~lf~~vi~----l~~s~d~~~Krl~YLyl~~~~~~-~~el~lL~iNtl~k---Dl~~~np-~ir~lALr~L~--~ 72 (632)
|.|++.+.-.+++ .+...|..++-=+-=.+...... -++++.-++.+... -.++++. +=-++||--|+ .
T Consensus 332 ~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 332 GEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred ccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 5666655555555 33445554443322223333322 35677666665544 2232333 33445555444 5
Q ss_pred CCchhhHHHHHHHHHhhhCC--------CChHHHHHHHHHHHHhhhh-ccccccccchHH-----HHHHHhcCCChhHHH
Q 006763 73 IRVDKITEYLCDPLQRCLKD--------DDPYVRKTAAICVAKLYDI-NAELVEDRGFLE-----SLKDLISDNNPMVVA 138 (632)
Q Consensus 73 I~~~ei~~~l~~~v~~~L~d--------~~pyVRK~A~~al~kl~~~-~p~~v~~~~~~~-----~L~~lL~D~d~~Vv~ 138 (632)
+-.|...+.++|.|.+++.- ....||-.|+..+--+++- .|+.++. +.. .+...+-|++..+..
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p--~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP--VLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH--HHHHHHHHHHHHHhcCchhhHhH
Confidence 66789999999999998863 4557999999988888875 4555542 433 345567799999999
Q ss_pred HHHHHHHHHHhcCCC--CchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHh-hcCCCHHHH
Q 006763 139 NAVAALAEIEENSSR--PIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR-LQHANCAVV 215 (632)
Q Consensus 139 ~Al~aL~eI~~~~~~--~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~-L~~~n~aVv 215 (632)
+|.+||.|..-..+. ..++++. ++.+ ...-...+-|.++.. +....+...+.+++.+.+. +.|=+..+.
T Consensus 490 AAsAAlqE~VGR~~n~p~Gi~Lis-~~dy-~sV~~rsNcy~~l~~------~ia~~~~y~~~~f~~L~t~Kv~HWd~~ir 561 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFPHGISLIS-TIDY-FSVTNRSNCYLDLCV------SIAEFSGYREPVFNHLLTKKVCHWDVKIR 561 (1133)
T ss_pred HHHHHHHHHhccCCCCCCchhhhh-hcch-hhhhhhhhHHHHHhH------HHHhhhhHHHHHHHHHHhcccccccHHHH
Confidence 999999998654321 1122211 0000 000012233554322 2222233445667766554 788889999
Q ss_pred HHHHHHHHHhhhccCChHHHHHHHHhcccchh-hhccCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHH
Q 006763 216 LSAVKMILQQMELITSTDVVRNLCKKMAPPLV-TLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKM 294 (632)
Q Consensus 216 ~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~-~Lls~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~ 294 (632)
..++.++.++.. ..|+.... -..++|+ ..++++.+.|....-....++.....+- +.+ .++..
T Consensus 562 elaa~aL~~Ls~--~~pk~~a~---~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~-~~~----------~~l~e 625 (1133)
T KOG1943|consen 562 ELAAYALHKLSL--TEPKYLAD---YVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE-PVI----------KGLDE 625 (1133)
T ss_pred HHHHHHHHHHHH--hhHHhhcc---cchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh-hhh----------hhhHH
Confidence 999998887532 23443321 1233444 4557788888877666666654321100 000 00000
Q ss_pred HHHHHHHHhcCcccHHHHHHHHH-Hhh-hhcCHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHhhhchhhHHH
Q 006763 295 EKLEIMIKLASDRNIDQVLLEFK-EYA-TEVDVDFVRKAVRAIGRCAIKLE-----RAAERCISVLLELIKIKVNYVVQE 367 (632)
Q Consensus 295 ~kL~lL~~L~n~~Ni~~Iv~EL~-~yl-~~~d~~~~~~~i~aIg~la~k~~-----~~~~~~v~~Ll~ll~~~~~~v~~e 367 (632)
..+.-+. .|+..+. .+. +....-++....+.|..+...-. ...+..-.++.+.++. .+.+.++
T Consensus 626 ~~i~~l~---------~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~-~n~i~~~ 695 (1133)
T KOG1943|consen 626 NRIAGLL---------SIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL-PNQIRDA 695 (1133)
T ss_pred HHhhhhh---------hhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc-hHHHHHH
Confidence 0000000 0111111 000 00000111111122222221111 1122222333444422 2367777
Q ss_pred HHHHHHHHHhhC----cccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCcc-CC--HHHHHHHHhhhCCCC-CHHHH
Q 006763 368 AIIVIKDIFRRY----PNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI-DN--ADELLESFLESFPEE-PAQVQ 439 (632)
Q Consensus 368 ~i~~l~~ilr~~----p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i-~~--~~~~l~~l~~~f~~e-~~~vq 439 (632)
++..+.+++..| +..-..++.++...+.+..+...+..++-++|--.... .- -..+.+.++..++.. .++-|
T Consensus 696 av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR 775 (1133)
T KOG1943|consen 696 AVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEAR 775 (1133)
T ss_pred HHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHH
Confidence 777777776643 22222356666666666656566777777777654322 11 233455556666655 77888
Q ss_pred HHHHHHHHHHhhcC----CCCChHHHHHHHHHh
Q 006763 440 LQLLTATVKLFLKK----PTEGPQQMIQVVLNN 468 (632)
Q Consensus 440 ~~iLta~~Kl~~~~----p~e~~~~~v~~ll~~ 468 (632)
.+.+-++.++.... +++..++....+++-
T Consensus 776 ~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~ 808 (1133)
T KOG1943|consen 776 QQNVKALAHVCKTVTSLLFSESIEKFRETLLNA 808 (1133)
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 88888888775532 222345555555553
No 121
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.00 E-value=0.74 Score=39.35 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=62.7
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHhhhhcc-ccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHH
Q 006763 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSH 161 (632)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p-~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~ 161 (632)
...+..-+.|+.+.||--|..-+.++.+... .......++..+...|+|.|+-|=.||+..|..++...+. .
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-------~ 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-------E 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-------H
Confidence 3446677789999999999999999998766 3333346778888899999999999999999999876653 2
Q ss_pred HHHHHHHHh
Q 006763 162 TLSKLLTAL 170 (632)
Q Consensus 162 ~~~~Ll~~l 170 (632)
.+..|++..
T Consensus 78 vl~~L~~~y 86 (92)
T PF10363_consen 78 VLPILLDEY 86 (92)
T ss_pred HHHHHHHHH
Confidence 455555543
No 122
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=2.1 Score=48.70 Aligned_cols=138 Identities=24% Similarity=0.234 Sum_probs=93.1
Q ss_pred HHHHHHHHHhhcCCCChHHHhHHHHHhcCC---Cchhh--------HHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhc
Q 006763 44 AILAVNTFVKDSQDPNPLIRALAVRTMGCI---RVDKI--------TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN 112 (632)
Q Consensus 44 ~lL~iNtl~kDl~~~np~ir~lALr~L~~I---~~~ei--------~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~ 112 (632)
..|.-..+-+-|+-+|-.||..|+..+-.. +.|+. ++.-...+.++|.|+-|-||.+|+.++.|++...
T Consensus 172 ~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 172 YRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 445556778999999999999998877653 44433 4455567889999999999999999999998776
Q ss_pred cccccccchHHHHHH----HhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHh----hccChhhHHHHHHH
Q 006763 113 AELVEDRGFLESLKD----LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL----NECTEWGQVFILDA 184 (632)
Q Consensus 113 p~~v~~~~~~~~L~~----lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l----~~~~ew~qi~lL~l 184 (632)
=+.++...+.+.+.. +-.|+...|..+.+.-+.+|..+. ..++.+.++|..+ .|-++--.+...++
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np------~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ 325 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP------LSHPLLEQLLPALRYSLHDNSEKVRVAFVDM 325 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc------cchhHHHHHHHhcchhhhccchhHHHHHHHH
Confidence 666665334444444 334677788888888888876542 2334455555443 24455544444454
Q ss_pred Hhc
Q 006763 185 LSR 187 (632)
Q Consensus 185 L~~ 187 (632)
|.+
T Consensus 326 ll~ 328 (1005)
T KOG1949|consen 326 LLK 328 (1005)
T ss_pred HHH
Confidence 443
No 123
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.34 E-value=37 Score=42.35 Aligned_cols=191 Identities=13% Similarity=0.115 Sum_probs=107.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHH---hc-ccchhhhccCchhHHHHHHHHHHHHHhhCccc
Q 006763 199 IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK---KM-APPLVTLLSAEPEIQYVALRNINLIVQRRPTI 274 (632)
Q Consensus 199 il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~---~~-~~~L~~Lls~~~niryvaL~~l~~i~~~~p~~ 274 (632)
++..+.--|++-+..+.++|++++..++. ++.. ++.. .+ ...|.++.-.+.++|...+++...+...+|..
T Consensus 260 vip~l~~eL~se~~~~Rl~a~~lvg~~~~---~~~~--~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 260 VIPQLEFELLSEQEEVRLKAVKLVGRMFS---DKDS--QLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHh---cchh--hhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh
Confidence 34444445678899999999999988753 1110 1100 01 11223444568999999999999999988876
Q ss_pred hhcccceeE-eccCCchhHHHHHHHHHHHhcCc----ccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHh-h------
Q 006763 275 LAHEIKVFF-CKYNDPIYVKMEKLEIMIKLASD----RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK-L------ 342 (632)
Q Consensus 275 ~~~~~~~f~-~l~~dd~~Ik~~kL~lL~~L~n~----~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k-~------ 342 (632)
......... +..+-|..+|.+..-++....-. ..+..++..+.+-++|--..+|+.++..+.++-.+ |
T Consensus 335 ~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~ 414 (1266)
T KOG1525|consen 335 AKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAG 414 (1266)
T ss_pred hhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 544322211 22233444555444333222111 11222455555666677788999999888877765 2
Q ss_pred ----hhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHHhh
Q 006763 343 ----ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESL 394 (632)
Q Consensus 343 ----~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l 394 (632)
.+...|+-+.++.++-..+.....-+-.++...+.-++---+.-+..|...+
T Consensus 415 ~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l 470 (1266)
T KOG1525|consen 415 GKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLL 470 (1266)
T ss_pred cccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Confidence 2456799999999988775433322223444444433322223344444443
No 124
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.77 E-value=1.5 Score=41.63 Aligned_cols=125 Identities=19% Similarity=0.314 Sum_probs=74.5
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHH
Q 006763 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI 199 (632)
Q Consensus 120 ~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~i 199 (632)
.|...+..+|+++++.-.-.++.++..+++.++. +. ++ ..+..|.+. ++.+|..
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~---e~-------l~---~~~~~W~~~-Ll~~L~~------------ 78 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW---EI-------LL---SHGSQWLRA-LLSILEK------------ 78 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH---HH-------HH---HHHHHHHHH-HHHHHcC------------
Confidence 5888888999988888888888888777665431 11 11 234566653 4444433
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhccC-ChHHHHHHHH----hcccchhhhccCchhHHHHHHHHHHHHHhhCccc
Q 006763 200 VERVTPRLQHANCAVVLSAVKMILQQMELIT-STDVVRNLCK----KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTI 274 (632)
Q Consensus 200 l~~v~~~L~~~n~aVv~eaik~i~~~~~~i~-~~~~~~~~~~----~~~~~L~~Lls~~~niryvaL~~l~~i~~~~p~~ 274 (632)
..+..+.-.|+.++..++..+. .+++.|++.. +++++++.++++ +...-.+|+.+..++..+|..
T Consensus 79 ---------~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~-~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 79 ---------PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD-SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHCCcc
Confidence 2223444445555444433332 3444444322 223333344433 567778999999999999999
Q ss_pred hhcccc
Q 006763 275 LAHEIK 280 (632)
Q Consensus 275 ~~~~~~ 280 (632)
|.+|..
T Consensus 149 ~rp~~~ 154 (165)
T PF08167_consen 149 FRPFAN 154 (165)
T ss_pred ccchHH
Confidence 987653
No 125
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=5.1 Score=46.73 Aligned_cols=182 Identities=16% Similarity=0.231 Sum_probs=115.1
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHhhhccCChHHHHHH-HHhcccchhhhcc--CchhHHHHHHHHHHHHHhhCccc--
Q 006763 201 ERVTPRLQH-ANCAVVLSAVKMILQQMELITSTDVVRNL-CKKMAPPLVTLLS--AEPEIQYVALRNINLIVQRRPTI-- 274 (632)
Q Consensus 201 ~~v~~~L~~-~n~aVv~eaik~i~~~~~~i~~~~~~~~~-~~~~~~~L~~Lls--~~~niryvaL~~l~~i~~~~p~~-- 274 (632)
+.++.-|+. .+++..++++.=++.++- +.+++.+..+ ++.+++.|+.|++ .+++|...|.|.|..++...|.-
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~-mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLS-MGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHh-hcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 333345554 488999999988887653 4566655443 4566788899996 46899999999999999998853
Q ss_pred --hhcccceeEe---ccCCchhHHHHHHHHHHHhcCcccHHHH----HHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhh
Q 006763 275 --LAHEIKVFFC---KYNDPIYVKMEKLEIMIKLASDRNIDQV----LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA 345 (632)
Q Consensus 275 --~~~~~~~f~~---l~~dd~~Ik~~kL~lL~~L~n~~Ni~~I----v~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~ 345 (632)
+..|.-..+| +.-.=+.+.-..|+.|-++....+...+ +.-.+.|+.-.....+|.++....+|+.+..++
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd 328 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD 328 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 2223211111 0011123566667777776666654322 122233444445677889998889999987654
Q ss_pred HH----HHHHHHHHHHhhhchhhHHHHHHHHHHHHh---hCcccH
Q 006763 346 AE----RCISVLLELIKIKVNYVVQEAIIVIKDIFR---RYPNTY 383 (632)
Q Consensus 346 ~~----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr---~~p~~~ 383 (632)
.- ..+.+|..+|+.........+...+..++. .+|++.
T Consensus 329 ~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kL 373 (1051)
T KOG0168|consen 329 EFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKL 373 (1051)
T ss_pred cchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHH
Confidence 32 346677888888877777766665555554 455543
No 126
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.68 E-value=8.8 Score=44.02 Aligned_cols=191 Identities=18% Similarity=0.261 Sum_probs=120.3
Q ss_pred hhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh----chhhH
Q 006763 290 IYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK----VNYVV 365 (632)
Q Consensus 290 ~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~----~~~v~ 365 (632)
...|..=+|.|...++...+..|.+.+..- +... .++...+..+......-...+++.+.++++.. ..++.
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~--~~~~---~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~ 414 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKNK--KITP---LEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLR 414 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC--CCCH---HHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHH
Confidence 456777788988888888777777766531 1121 23334444443333333567889999988864 23666
Q ss_pred HHHHHHHHHHHhhC----ccc----HHHHHHHHHHhhccC---ChhhHHHHHHHHHhcccCccCCHHHHHHHHhhhCCCC
Q 006763 366 QEAIIVIKDIFRRY----PNT----YESIIATLCESLDTL---DEPEAKASMIWIIGEYAERIDNADELLESFLESFPEE 434 (632)
Q Consensus 366 ~e~i~~l~~ilr~~----p~~----~~~ii~~L~~~l~~i---~~p~a~~~~iWiLGEy~~~i~~~~~~l~~l~~~f~~e 434 (632)
..++..+..+++++ +.. .+..++.+.+.+... .+.+-+..++-.||.-|. +.....+..++..=..-
T Consensus 415 ~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--~~~i~~l~~~l~~~~~~ 492 (574)
T smart00638 415 ESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH--PSSIKVLEPYLEGAEPL 492 (574)
T ss_pred HHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC--hhHHHHHHHhcCCCCCC
Confidence 67777777766642 222 133444444433321 223335667778888776 34555666666532344
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcCCH
Q 006763 435 PAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDP 493 (632)
Q Consensus 435 ~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~~~ 493 (632)
+..+|.+.+.|+-|+....|.+ .++.+..++. +.+.++|||--|+ ..|+.++|
T Consensus 493 ~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~---n~~e~~EvRiaA~--~~lm~t~P 545 (574)
T smart00638 493 STFIRLAAILALRNLAKRDPRK-VQEVLLPIYL---NRAEPPEVRMAAV--LVLMETKP 545 (574)
T ss_pred CHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHc---CCCCChHHHHHHH--HHHHhcCC
Confidence 6889999999999998888875 7777777775 3567899988776 56666655
No 127
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=91.04 E-value=11 Score=41.36 Aligned_cols=184 Identities=18% Similarity=0.256 Sum_probs=112.3
Q ss_pred CCChHHHHHHHHHHHHhhhhccccccccch---HHHHHHHhcC-CChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHH
Q 006763 92 DDDPYVRKTAAICVAKLYDINAELVEDRGF---LESLKDLISD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLL 167 (632)
Q Consensus 92 d~~pyVRK~A~~al~kl~~~~p~~v~~~~~---~~~L~~lL~D-~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll 167 (632)
|...-=||-|..-+.++.......+=+..| +..+.+.|.| .++....-|+..|.+++.+.+...++-..-.+.++|
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 334445666666688887665433322223 2344556777 888888899999999998887666655555566666
Q ss_pred HHhhccChh----hHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcc
Q 006763 168 TALNECTEW----GQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMA 243 (632)
Q Consensus 168 ~~l~~~~ew----~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~ 243 (632)
..-++..+- .---.++.++.+-|. ..+..+.+++...+.-....++|...++...++.+++ ..++..+.
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL-~~ll~dia 450 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPL------QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEEL-LNLLPDIA 450 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCch------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHH-HHhhhhhh
Confidence 665554321 111244555555542 2233344566666666666777777776665644444 34455666
Q ss_pred cchhhhc-cCchhHHHHHHHHHHHHHhhCc-cchhccccee
Q 006763 244 PPLVTLL-SAEPEIQYVALRNINLIVQRRP-TILAHEIKVF 282 (632)
Q Consensus 244 ~~L~~Ll-s~~~niryvaL~~l~~i~~~~p-~~~~~~~~~f 282 (632)
+.++.-- |.+.-+|-.+.-+|..|+.+-. +-+.+|+..+
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 6665543 5677888888888877777654 5667776543
No 128
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=90.38 E-value=2.5 Score=42.94 Aligned_cols=90 Identities=23% Similarity=0.330 Sum_probs=62.6
Q ss_pred HHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHH
Q 006763 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (632)
Q Consensus 47 ~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~ 126 (632)
+||.|-.-+.+...++|--+--++|.+.+|.-++.+...+.+ .-.+|+||--|+.|+..+-. + .-++.|+
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d--~~E~pMVRhEaAeALGaIa~--e------~~~~vL~ 257 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLD--ETEHPMVRHEAAEALGAIAD--E------DCVEVLK 257 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHh--hhcchHHHHHHHHHHHhhcC--H------HHHHHHH
Confidence 577777777777888888888888888877776664444433 22678888888888876542 2 2456778
Q ss_pred HHhcCCChhHHHHHHHHHHH
Q 006763 127 DLISDNNPMVVANAVAALAE 146 (632)
Q Consensus 127 ~lL~D~d~~Vv~~Al~aL~e 146 (632)
+.+.|.++.|.-++..+|--
T Consensus 258 e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 258 EYLGDEERVVRESCEVALDM 277 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHH
Confidence 88888877777666666643
No 129
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.36 E-value=4.8 Score=41.79 Aligned_cols=153 Identities=15% Similarity=0.226 Sum_probs=97.0
Q ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCC---Cch---hhHHHHHHHHHhhhCCCChHHHH
Q 006763 27 KLVYLYLINYAKS-QPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI---RVD---KITEYLCDPLQRCLKDDDPYVRK 99 (632)
Q Consensus 27 rl~YLyl~~~~~~-~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I---~~~---ei~~~l~~~v~~~L~d~~pyVRK 99 (632)
..-|+...+|-.- +|| ++.+...+-|.|.|-...+-+|.+|.++ ..+ .+...++..|.+.+++...-|-|
T Consensus 71 ~~e~~~sk~l~~fd~p~---~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~Vsr 147 (334)
T KOG2933|consen 71 SVEYIVSKNLSPFDDPE---AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSR 147 (334)
T ss_pred cHHHhhhcccCccCcHH---HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 5667777777654 355 5677778889998888777777776654 333 33445677788889999999999
Q ss_pred HHHHHHHHhhhhccccccccchHHHHHHHhc---CCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChh
Q 006763 100 TAAICVAKLYDINAELVEDRGFLESLKDLIS---DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEW 176 (632)
Q Consensus 100 ~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~---D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew 176 (632)
+|++|+.-+|...-+.+.+ .+-..+..||. +.+--|.-.|-.+|..+..+
T Consensus 148 aA~~t~~difs~ln~~i~~-~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~-------------------------- 200 (334)
T KOG2933|consen 148 AACMTLADIFSSLNNSIDQ-ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH-------------------------- 200 (334)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc--------------------------
Confidence 9999999999866555442 22223333332 22233333443333333211
Q ss_pred hHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 006763 177 GQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQM 226 (632)
Q Consensus 177 ~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~ 226 (632)
. ....+++.+.+.++|.|+-+...+..++..+.
T Consensus 201 ------------v-----tp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 201 ------------V-----TPQKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred ------------c-----ChHHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 1 12355667777888888888777777766543
No 130
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=90.07 E-value=20 Score=40.94 Aligned_cols=172 Identities=12% Similarity=0.108 Sum_probs=102.8
Q ss_pred hcCCCChHHHhHHHHHhcCCCch----------hhHHHHHHHHHhhh-CCCChHHHHHHHHHHHHhhh----hccccccc
Q 006763 54 DSQDPNPLIRALAVRTMGCIRVD----------KITEYLCDPLQRCL-KDDDPYVRKTAAICVAKLYD----INAELVED 118 (632)
Q Consensus 54 Dl~~~np~ir~lALr~L~~I~~~----------ei~~~l~~~v~~~L-~d~~pyVRK~A~~al~kl~~----~~p~~v~~ 118 (632)
.++...|.+|.++++-.+....- ++.++....+.-++ .+++..++..|++|+..+-+ ++-. ...
T Consensus 339 sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~~ 417 (678)
T KOG1293|consen 339 SLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG-LKR 417 (678)
T ss_pred HHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC-Ccc
Confidence 45567788888888876654322 23333333333332 35888999999999866544 2333 333
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCc-hhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCH-HHH
Q 006763 119 RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI-FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA-REA 196 (632)
Q Consensus 119 ~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~-~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~-~~~ 196 (632)
.+..+.+.+++.|.+.+|...++.+++.+.-.-+... .-+..+-+..+.+.+.++++-....-+++|...--... .+.
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 4577889999999999999999999988754322110 11122235566666667766666666677764322222 122
Q ss_pred HHH-----HHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 006763 197 ENI-----VERVTPRLQHANCAVVLSAVKMILQQM 226 (632)
Q Consensus 197 ~~i-----l~~v~~~L~~~n~aVv~eaik~i~~~~ 226 (632)
+.. .+.+..+.++.+.+|.=+|..++-+++
T Consensus 498 ~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 222 233344556677777777777666543
No 131
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=89.85 E-value=0.7 Score=45.52 Aligned_cols=131 Identities=20% Similarity=0.179 Sum_probs=85.7
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCC-Ch-HHHhHHHHHhcCCCchhhHHHHHHHHHhhh
Q 006763 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDP-NP-LIRALAVRTMGCIRVDKITEYLCDPLQRCL 90 (632)
Q Consensus 13 ~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~-np-~ir~lALr~L~~I~~~ei~~~l~~~v~~~L 90 (632)
.+-.+.++...+.|-++++++....+...+- .++.+.+-+.+- |- .+=+++-+.++.+.... +.+.+.+.+-+
T Consensus 55 l~~~L~~~~~~E~~~la~~il~~~~~~~~~~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W~ 129 (213)
T PF08713_consen 55 LADELWESGYREERYLALLILDKRRKKLTEE---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEKWA 129 (213)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHCGGG--HH---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHhHHHhhhhhHH---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHHH
Confidence 3445777888888888888776655433221 244444444432 22 33344455555442221 44566788889
Q ss_pred CCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCC
Q 006763 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (632)
Q Consensus 91 ~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~ 152 (632)
.|.++++||.|+.++.+.++. +..+ .+.+.+..++.|.+..|.-+.--+|.++...++
T Consensus 130 ~s~~~w~rR~~~v~~~~~~~~--~~~~--~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 130 KSDNEWVRRAAIVMLLRYIRK--EDFD--ELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp HCSSHHHHHHHHHCTTTHGGG--CHHH--HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred hCCcHHHHHHHHHHHHHHHHh--cCHH--HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 999999999999999887766 2222 366788888899999999888889999977654
No 132
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.41 E-value=0.75 Score=30.60 Aligned_cols=29 Identities=34% Similarity=0.466 Sum_probs=24.8
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 006763 121 FLESLKDLISDNNPMVVANAVAALAEIEE 149 (632)
Q Consensus 121 ~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~ 149 (632)
+++.+.++++|+++.|..+|+.+|.+|.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999998865
No 133
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.34 E-value=2.9 Score=47.61 Aligned_cols=146 Identities=23% Similarity=0.320 Sum_probs=98.3
Q ss_pred chhhHHHHH-HHHHhhhCCCChHHHHHHHHHHHHhhhh-ccccccc--cch----HHHHHHHhcCCChhHHHHHHHHHHH
Q 006763 75 VDKITEYLC-DPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVED--RGF----LESLKDLISDNNPMVVANAVAALAE 146 (632)
Q Consensus 75 ~~ei~~~l~-~~v~~~L~d~~pyVRK~A~~al~kl~~~-~p~~v~~--~~~----~~~L~~lL~D~d~~Vv~~Al~aL~e 146 (632)
+++|+-.+. |.+-+.|+-+|..||-.|+.-+.-+|-+ +|+.-.+ ..+ ...+.+||.|.=|+|.+.|+--++.
T Consensus 167 Veeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k 246 (1005)
T KOG1949|consen 167 VEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCK 246 (1005)
T ss_pred HHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 455555444 6678999999999999999999998864 7776221 112 2567889999999999999888887
Q ss_pred HHhcCCCCchhccHHH-HHHHHHHhhc------cChhhHHHHHHHHhc--cccCCHHHHHHHHHHHHHhhcCCCHHHHHH
Q 006763 147 IEENSSRPIFEITSHT-LSKLLTALNE------CTEWGQVFILDALSR--YKAADAREAENIVERVTPRLQHANCAVVLS 217 (632)
Q Consensus 147 I~~~~~~~~~~l~~~~-~~~Ll~~l~~------~~ew~qi~lL~lL~~--y~~~~~~~~~~il~~v~~~L~~~n~aVv~e 217 (632)
+.. .+|.++++. +..+++.+-+ ++ --.+.+.+-|.. ..|....-.+.++..+.+.|+.++..|..+
T Consensus 247 ~~s----~fWe~iP~~i~~~ll~kI~d~~a~dt~s-~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA 321 (1005)
T KOG1949|consen 247 ITS----KFWEMIPPTILIDLLKKITDELAFDTSS-DVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVA 321 (1005)
T ss_pred HHH----HHHHHcCHHHHHHHHHHHHHHhhhccch-heehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHH
Confidence 753 457766544 5667766532 22 122333333332 235555555566666767777788888888
Q ss_pred HHHHHHHh
Q 006763 218 AVKMILQQ 225 (632)
Q Consensus 218 aik~i~~~ 225 (632)
++..++.+
T Consensus 322 ~vd~ll~i 329 (1005)
T KOG1949|consen 322 FVDMLLKI 329 (1005)
T ss_pred HHHHHHHH
Confidence 88877754
No 134
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.30 E-value=1.1 Score=51.23 Aligned_cols=155 Identities=19% Similarity=0.213 Sum_probs=92.5
Q ss_pred HHHhhcCCCcchHHHHHHHHHH-hcCCCCcHHHHHHHHHHh-hcCCCChHHHhHHHHHhcCCC--chhhHHHHHHHHHhh
Q 006763 14 VVNCMQTENLELKKLVYLYLIN-YAKSQPDLAILAVNTFVK-DSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRC 89 (632)
Q Consensus 14 vi~l~~s~d~~~Krl~YLyl~~-~~~~~~el~lL~iNtl~k-Dl~~~np~ir~lALr~L~~I~--~~ei~~~l~~~v~~~ 89 (632)
|-+++..+|..+|+-|-+.+.. |...-.. =+|-.+.. -.+|.|..||-.|.-.+|-+. .|+.++ .+..+
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgnn---kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~----s~V~l 596 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGNN---KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLP----STVSL 596 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCch---hhHHHhhcccccccchHHHHHHHHHheeeEecChhhch----HHHHH
Confidence 3447778888888877554433 3222111 12333333 356888999999999998874 455444 34455
Q ss_pred hC-CCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHH-HhcCCC--CchhccHHHHHH
Q 006763 90 LK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI-EENSSR--PIFEITSHTLSK 165 (632)
Q Consensus 90 L~-d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI-~~~~~~--~~~~l~~~~~~~ 165 (632)
|. +-||+||=-|++++.-.+--.-. . .-++.|..|..|..--|.-.|+.++.-| ++.+.. +...-+++.+.+
T Consensus 597 Lses~N~HVRyGaA~ALGIaCAGtG~--~--eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~k 672 (929)
T KOG2062|consen 597 LSESYNPHVRYGAAMALGIACAGTGL--K--EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEK 672 (929)
T ss_pred HhhhcChhhhhhHHHHHhhhhcCCCc--H--HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHH
Confidence 54 47899999999988754432211 1 2568888889999888877777666544 333321 223344555555
Q ss_pred HHHHh-hc-cChhhHH
Q 006763 166 LLTAL-NE-CTEWGQV 179 (632)
Q Consensus 166 Ll~~l-~~-~~ew~qi 179 (632)
++..= .+ ...++-+
T Consensus 673 vI~dKhEd~~aK~GAi 688 (929)
T KOG2062|consen 673 VINDKHEDGMAKFGAI 688 (929)
T ss_pred HhhhhhhHHHHHHHHH
Confidence 55432 22 4566644
No 135
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.21 E-value=4 Score=46.68 Aligned_cols=134 Identities=17% Similarity=0.174 Sum_probs=90.0
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhcCCC----CcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCch------h
Q 006763 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ----PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD------K 77 (632)
Q Consensus 8 s~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~----~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~------e 77 (632)
...|-++++-..+++-.+|.=+...+..+.+++ .++.=...-.+.+-+.|+.|.||--|+-+||.+... +
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~ 163 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECP 163 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCccc
Confidence 456889999999999888887777777777644 334444444666778899999999999999998721 2
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHhh-----------------------------hhccccccccchHHHHHHH
Q 006763 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLY-----------------------------DINAELVEDRGFLESLKDL 128 (632)
Q Consensus 78 i~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~-----------------------------~~~p~~v~~~~~~~~L~~l 128 (632)
+...+...|+ +|+++-||+.|..++.-=- ++....+. ..+..+++-
T Consensus 164 v~n~l~~liq---nDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~--krv~Llewg 238 (892)
T KOG2025|consen 164 VVNLLKDLIQ---NDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSID--KRVLLLEWG 238 (892)
T ss_pred HHHHHHHHHh---cCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHH--HHHHHHHHh
Confidence 2222222222 5899999999988753111 11111121 355567777
Q ss_pred hcCCChhHHHHHHHHHHH
Q 006763 129 ISDNNPMVVANAVAALAE 146 (632)
Q Consensus 129 L~D~d~~Vv~~Al~aL~e 146 (632)
|.|++-+|-.++.-++..
T Consensus 239 LnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 239 LNDREFSVKGALVDAILS 256 (892)
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 888888888877776654
No 136
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.09 E-value=0.41 Score=55.42 Aligned_cols=121 Identities=13% Similarity=0.114 Sum_probs=79.0
Q ss_pred CCcchHHHHHHHHHHhcC----C----------CC----cHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHH
Q 006763 21 ENLELKKLVYLYLINYAK----S----------QP----DLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL 82 (632)
Q Consensus 21 ~d~~~Krl~YLyl~~~~~----~----------~~----el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l 82 (632)
++..++.-+.|.+..+.+ . .. +..-...+.+.+-....+..-+-++|++||+++.++.++.+
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l 526 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVL 526 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHH
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHH
Confidence 445677777777766543 1 11 23333444555445567788899999999999999988886
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcC--CChhHHHHHHHHHHHH
Q 006763 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD--NNPMVVANAVAALAEI 147 (632)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D--~d~~Vv~~Al~aL~eI 147 (632)
.+.+..-- +.+..+|..|+.|+.++-..+|+.+. +.+..++.| .++.|..+|+.+|.+-
T Consensus 527 ~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v~-----~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 527 LPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKVR-----EILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHHH-----HHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred HhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHHH-----HHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 65444422 55899999999999999888887665 556666554 5688998888777664
No 137
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.94 E-value=0.77 Score=41.08 Aligned_cols=68 Identities=26% Similarity=0.412 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhccCChhhHHHHHHHHHhcccCccCCHHHHHHHH------hhhCCCCCHHHHHHHHHHHHHHhh
Q 006763 384 ESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESF------LESFPEEPAQVQLQLLTATVKLFL 451 (632)
Q Consensus 384 ~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~~~~~l~~l------~~~f~~e~~~vq~~iLta~~Kl~~ 451 (632)
-.++..|++.|+.-.++...++++.=||||....++...+++.+ .+-...++++||.+.|.|+-|+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35788888888666688888999999999998887766655433 344567899999999999999865
No 138
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.80 E-value=8.7 Score=40.66 Aligned_cols=131 Identities=21% Similarity=0.238 Sum_probs=83.9
Q ss_pred cCCCcchHHHHHHHHHHhcCCCCcHHHHHHH-----HHHhhcCCCChHHHhHHHHHhcCC--CchhhHHHHH-----HHH
Q 006763 19 QTENLELKKLVYLYLINYAKSQPDLAILAVN-----TFVKDSQDPNPLIRALAVRTMGCI--RVDKITEYLC-----DPL 86 (632)
Q Consensus 19 ~s~d~~~Krl~YLyl~~~~~~~~el~lL~iN-----tl~kDl~~~np~ir~lALr~L~~I--~~~ei~~~l~-----~~v 86 (632)
++.+++.|--+.==+..+.+. =|-+...++ .+..=++++++.+|.+|.++++.. .+|...+.++ ..+
T Consensus 93 ~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 455566655555444444432 222222222 133467899999999999999998 3565555444 345
Q ss_pred HhhhC-CCChHHHHHHHHHHHHhhhhccccccc----cchHHHHHHHhcC--CChhHHHHHHHHHHHHHhcC
Q 006763 87 QRCLK-DDDPYVRKTAAICVAKLYDINAELVED----RGFLESLKDLISD--NNPMVVANAVAALAEIEENS 151 (632)
Q Consensus 87 ~~~L~-d~~pyVRK~A~~al~kl~~~~p~~v~~----~~~~~~L~~lL~D--~d~~Vv~~Al~aL~eI~~~~ 151 (632)
.+.++ +.+-.||++|..|+..+.+.+|-.... .| ...|.+.+.+ .+.....-++.++..+.+..
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 55554 577789999999999999988755432 23 3678888887 45555666666666665543
No 139
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.60 E-value=49 Score=37.53 Aligned_cols=125 Identities=25% Similarity=0.215 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC------c---hhhHHHHHHHHHhhhCCCCh
Q 006763 25 LKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR------V---DKITEYLCDPLQRCLKDDDP 95 (632)
Q Consensus 25 ~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~------~---~ei~~~l~~~v~~~L~d~~p 95 (632)
-|.+.-|.-..+++.-.+-.+=++|++.-==+ ||.+-.--|+++..+- . .+++...+..+.+++.+++-
T Consensus 28 rk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk--~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk 105 (885)
T COG5218 28 RKSLAELMEMLTAHEFSEEFLRVVNTILACKK--NPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDK 105 (885)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhcccc--CCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcch
Confidence 35556666666777766667778888764322 2322223333333321 1 46888888899999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccc--ccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcC
Q 006763 96 YVRKTAAICVAKLYDINAELVE--DRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (632)
Q Consensus 96 yVRK~A~~al~kl~~~~p~~v~--~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~ 151 (632)
-||+..+.-+..+...-.+.=+ -.+++..|.+-+-|+.+.|...|+.+|+......
T Consensus 106 ~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 106 KVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME 163 (885)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 9999998887777654332111 1256777778888999999999999999886544
No 140
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=3.1 Score=43.96 Aligned_cols=106 Identities=23% Similarity=0.180 Sum_probs=69.0
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHhhhhcccccc---ccchHHHHHHHhc-CCChhHHHHHHHHHHHHHhcCCCC--chh
Q 006763 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE---DRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRP--IFE 157 (632)
Q Consensus 84 ~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~---~~~~~~~L~~lL~-D~d~~Vv~~Al~aL~eI~~~~~~~--~~~ 157 (632)
..+...++++++-||+.|+..+..+.+-+|...+ +.++...|-..|. |.+-.|...|+.|++.+..+.+.- .|.
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl 206 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL 206 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3455588999999999999999999999995433 3466777777776 555667799999998876665321 111
Q ss_pred ccHHHHHHHHHHhhc--cChhhHHHHHHHHhcccc
Q 006763 158 ITSHTLSKLLTALNE--CTEWGQVFILDALSRYKA 190 (632)
Q Consensus 158 l~~~~~~~Ll~~l~~--~~ew~qi~lL~lL~~y~~ 190 (632)
.+.. +.-|.+.+.. .+.-.|.+++.++..+..
T Consensus 207 ~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 207 KLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred hcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 1111 2333333333 455566666666665543
No 141
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.28 E-value=25 Score=40.99 Aligned_cols=140 Identities=19% Similarity=0.294 Sum_probs=89.7
Q ss_pred hcccchhhhcc---CchhHHHHHHHHHHHHHhhC--ccchhcccceeEeccCCchhHHHHHHHHHHH-hcCcccHHHHHH
Q 006763 241 KMAPPLVTLLS---AEPEIQYVALRNINLIVQRR--PTILAHEIKVFFCKYNDPIYVKMEKLEIMIK-LASDRNIDQVLL 314 (632)
Q Consensus 241 ~~~~~L~~Lls---~~~niryvaL~~l~~i~~~~--p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~-L~n~~Ni~~Iv~ 314 (632)
.-.++|+.-|. .++++--++|+++..+..+. |.+. +|+...-..-+.+--. +-+++||.-++
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~-----------dds~qsdd~g~~iae~fik~qd~I~lll- 128 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVM-----------DDSTQSDDLGLWIAEQFIKNQDNITLLL- 128 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhc-----------ccchhhhHHHHHHHHHHHcCchhHHHHH-
Confidence 34566776663 47898888999998887654 2222 1111111112222111 23566666544
Q ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccH----
Q 006763 315 EFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERC-------ISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY---- 383 (632)
Q Consensus 315 EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~-------v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~---- 383 (632)
.|+..-|..+|+-+|+-|..+-..-|.....+ |..|+++|.+..+-|+.+++-.+..+.+.++..+
T Consensus 129 ---~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVA 205 (970)
T KOG0946|consen 129 ---QSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVA 205 (970)
T ss_pred ---HHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHH
Confidence 45556688888988888876655444444433 7789999999999999999999999999888764
Q ss_pred -HHHHHHHHHhhc
Q 006763 384 -ESIIATLCESLD 395 (632)
Q Consensus 384 -~~ii~~L~~~l~ 395 (632)
+.+...|+.+++
T Consensus 206 FENaFerLfsIIe 218 (970)
T KOG0946|consen 206 FENAFERLFSIIE 218 (970)
T ss_pred HHHHHHHHHHHHH
Confidence 344555555553
No 142
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=88.14 E-value=49 Score=36.98 Aligned_cols=194 Identities=15% Similarity=0.133 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHhhhh------cCHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHH
Q 006763 291 YVKMEKLEIMIKLASDRNIDQVLLEFKEYATE------VDVDFVRKAVRAIGRCAIKLER--------AAERCISVLLEL 356 (632)
Q Consensus 291 ~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~------~d~~~~~~~i~aIg~la~k~~~--------~~~~~v~~Ll~l 356 (632)
.....+-+++-.|+.+......+..|.+++.+ .+....|-+|.-++.+.-+.++ .....+..+..-
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~a 309 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNA 309 (464)
T ss_pred ccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHH
Confidence 45556777889999999999999999999843 2455667778888777666511 122377778888
Q ss_pred HhhhchhhHHHHHHHHHHHH-hhCccc--------HHHHHHHHHHhhccCChhh--------HHH------HHHHHHhcc
Q 006763 357 IKIKVNYVVQEAIIVIKDIF-RRYPNT--------YESIIATLCESLDTLDEPE--------AKA------SMIWIIGEY 413 (632)
Q Consensus 357 l~~~~~~v~~e~i~~l~~il-r~~p~~--------~~~ii~~L~~~l~~i~~p~--------a~~------~~iWiLGEy 413 (632)
++.+..-|..|++..+..++ +++... .-.++..+.+.+.....+. ... ..+.-+=|=
T Consensus 310 l~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~ 389 (464)
T PF11864_consen 310 LKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQ 389 (464)
T ss_pred HhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhC
Confidence 88788888889999888888 554221 1223333333333222111 211 112222111
Q ss_pred cCccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHhhhcCCCChHHHhhHHHHH
Q 006763 414 AERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE-GPQQMIQVVLNNATVETDNPDLRDRAYIYW 486 (632)
Q Consensus 414 ~~~i~~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e-~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~ 486 (632)
++......++++-|.+....-++..-..+|..-.|.. .|.. +=.+.+.++++..+..+.++++|-+|....
T Consensus 390 ~~~~g~~~~~~~f~~~~~~~lp~s~~~~vl~~~~~~~--~Ps~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l 461 (464)
T PF11864_consen 390 HDFNGPKDKLFNFFERVHSYLPDSSALLVLFYEERSC--SPSNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVL 461 (464)
T ss_pred CCcCccHHHHHHHHHHHhccCCHHHHHHHHHHHhccc--CCCChHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 1112123455555555444445444434443333332 3432 134566666665554678899999887643
No 143
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=88.08 E-value=5.9 Score=38.33 Aligned_cols=151 Identities=20% Similarity=0.291 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhhhh-cccc--------cccc------chHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHH
Q 006763 97 VRKTAAICVAKLYDI-NAEL--------VEDR------GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSH 161 (632)
Q Consensus 97 VRK~A~~al~kl~~~-~p~~--------v~~~------~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~ 161 (632)
||-.|+.|+.-+.+. +|.. +++. .-...+.-++.|.++.|..+|+.++..+..... .+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk-~~------ 74 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSK-PF------ 74 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccH-HH------
Confidence 677788877777766 3322 2211 223455667889999999999999998876531 11
Q ss_pred HHHHHHHHhh----ccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhccC----Ch
Q 006763 162 TLSKLLTALN----ECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQH-ANCAVVLSAVKMILQQMELIT----ST 232 (632)
Q Consensus 162 ~~~~Ll~~l~----~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~-~n~aVv~eaik~i~~~~~~i~----~~ 232 (632)
+.. .+.-+ .+.++....- .. ...+-..+...|++ .++.++-++.|++..+....+ .+
T Consensus 75 -L~~-Ae~~~~~~~sFtslS~tLa-~~-----------i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~ 140 (182)
T PF13251_consen 75 -LAQ-AEESKGPSGSFTSLSSTLA-SM-----------IMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPP 140 (182)
T ss_pred -HHH-HHhcCCCCCCcccHHHHHH-HH-----------HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCH
Confidence 110 11000 1222221100 00 01111223333443 466777777777765532211 23
Q ss_pred HHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCc
Q 006763 233 DVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP 272 (632)
Q Consensus 233 ~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p 272 (632)
+++.. ++..+..++ ++|++++-.+|..+..++...+
T Consensus 141 ~ll~~----~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 141 GLLTE----VVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred hHHHH----HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 34443 344444444 5899999999999998887644
No 144
>PF05536 Neurochondrin: Neurochondrin
Probab=88.02 E-value=55 Score=37.42 Aligned_cols=237 Identities=13% Similarity=0.130 Sum_probs=119.5
Q ss_pred CcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHH
Q 006763 7 VSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPL 86 (632)
Q Consensus 7 vs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v 86 (632)
.+..+-.+++++.+.+-+.|-.|-+-++.+.+.++.... .-..+. .++| + +.+
T Consensus 3 ~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~-~~~~v~---------------~aig----~-------~Fl 55 (543)
T PF05536_consen 3 QSASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQ-TRRRVF---------------EAIG----F-------KFL 55 (543)
T ss_pred chHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHH-HHHHHH---------------HhcC----h-------hHH
Confidence 455677888999999977777777777777665443211 000011 1111 0 112
Q ss_pred HhhhCC------CChHHHHHHHHHHHHhhhhccccccccchH---HHHHHHhcCCCh-hHHHHHHHHHHHHHhcCCCCch
Q 006763 87 QRCLKD------DDPYVRKTAAICVAKLYDINAELVEDRGFL---ESLKDLISDNNP-MVVANAVAALAEIEENSSRPIF 156 (632)
Q Consensus 87 ~~~L~d------~~pyVRK~A~~al~kl~~~~p~~v~~~~~~---~~L~~lL~D~d~-~Vv~~Al~aL~eI~~~~~~~~~ 156 (632)
.|+|.. .++..-+.-+++++..|-.+|+...+.+++ +.+.+.+...+. .++.-|+..|..|..+..+..-
T Consensus 56 ~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~a 135 (543)
T PF05536_consen 56 DRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKA 135 (543)
T ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHH
Confidence 222222 255666667777777776677766555554 344445544444 7777777777777644322111
Q ss_pred hccHHHHHHHHHHhhccChhhHHHHHHHH----hcccc----CCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhc
Q 006763 157 EITSHTLSKLLTALNECTEWGQVFILDAL----SRYKA----ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMEL 228 (632)
Q Consensus 157 ~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL----~~y~~----~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~ 228 (632)
-+....+..|+..+.. .+..+-..+.++ ..... ........++..+...+++....-.++....+..+++.
T Consensus 136 Ll~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 136 LLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 1112234455555443 333322222222 22221 11223334445554445444445556666666665543
Q ss_pred cCC-h---HHHHHHHHhcccchhhhcc-C-chhHHHHHHHHHHHHHhhC
Q 006763 229 ITS-T---DVVRNLCKKMAPPLVTLLS-A-EPEIQYVALRNINLIVQRR 271 (632)
Q Consensus 229 i~~-~---~~~~~~~~~~~~~L~~Lls-~-~~niryvaL~~l~~i~~~~ 271 (632)
.+. + .....+...+...+..++. + .+.-|-.+|.....+++..
T Consensus 215 ~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~ 263 (543)
T PF05536_consen 215 SPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLL 263 (543)
T ss_pred CCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 210 0 0112233344555566663 3 5678888888888777764
No 145
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=87.88 E-value=51 Score=39.45 Aligned_cols=130 Identities=18% Similarity=0.186 Sum_probs=92.6
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCC-CChHHHhHHHHHhcCCCch--hhHHHHHHHHHhhhCCCChHHHHH
Q 006763 24 ELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQD-PNPLIRALAVRTMGCIRVD--KITEYLCDPLQRCLKDDDPYVRKT 100 (632)
Q Consensus 24 ~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~-~np~ir~lALr~L~~I~~~--ei~~~l~~~v~~~L~d~~pyVRK~ 100 (632)
.++-.+.+.+..+.=.+.+++-=.+..|.|.|+- ....+|..-+-+||-+++. .|++--+|-|-.+|.|+++.|||-
T Consensus 946 ~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrq 1025 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQ 1025 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHH
Confidence 3455566666666656777887778888888863 3446777767778888776 599999999999999999999999
Q ss_pred HHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCC
Q 006763 101 AAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (632)
Q Consensus 101 A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~ 154 (632)
+++-+.++.+.+-=.-...-|+..+.. |-|.++.+..-|=..+.++.+...+.
T Consensus 1026 t~ilL~rLLq~~~vKw~G~Lf~Rf~l~-l~D~~edIr~~a~f~~~~vL~~~~P~ 1078 (1529)
T KOG0413|consen 1026 TIILLARLLQFGIVKWNGELFIRFMLA-LLDANEDIRNDAKFYISEVLQSEEPN 1078 (1529)
T ss_pred HHHHHHHHHhhhhhhcchhhHHHHHHH-HcccCHHHHHHHHHHHHHHHhhcCcc
Confidence 999999998753211111112333333 33788888888877788887765443
No 146
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=87.64 E-value=5.8 Score=38.49 Aligned_cols=134 Identities=12% Similarity=0.119 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHH
Q 006763 309 IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIA 388 (632)
Q Consensus 309 i~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~ 388 (632)
++.-++.+++.+...+..++..+++-|+.+...-=-.+..|+.+++-|..+..+.+...+...++.+..|||+....-
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~-- 83 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR-- 83 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH--
Confidence 345566777777778899999999988877765434456899999999999999999999999999999988653211
Q ss_pred HHHHhhccCChhhHHHHHHHHHhcccCccC----CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCC
Q 006763 389 TLCESLDTLDEPEAKASMIWIIGEYAERID----NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKP 454 (632)
Q Consensus 389 ~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~----~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p 454 (632)
+.+ .++.+.-+...-+++... .....+..+..-+. .+...|..+|++++|.|....
T Consensus 84 -~~~--------gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~~~ 143 (187)
T PF12830_consen 84 -YSE--------GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDFDL 143 (187)
T ss_pred -HHH--------HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhhc
Confidence 111 112222222222222111 13445555554444 556677788888888887654
No 147
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=87.63 E-value=40 Score=35.48 Aligned_cols=188 Identities=18% Similarity=0.203 Sum_probs=103.1
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHhhhh--ccccccc--cchHHHHHHHhcCCCh--hHHHHHHHHHHHHHhcCCCCch
Q 006763 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDI--NAELVED--RGFLESLKDLISDNNP--MVVANAVAALAEIEENSSRPIF 156 (632)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~A~~al~kl~~~--~p~~v~~--~~~~~~L~~lL~D~d~--~Vv~~Al~aL~eI~~~~~~~~~ 156 (632)
+......+.+++.-.|..|.-++.+++.. .++.+.+ ..+.+.+.+.++-... ...+.-+..|.-|.-..+...-
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 34455666788899999999999998865 3454442 2455667777765443 3333233333333211111112
Q ss_pred hccHHHHHHHHHHhhccCh--hhHHHHH---HHHhccccCCHHHHH---HHHHHHHH--hhcC----------CCHHHHH
Q 006763 157 EITSHTLSKLLTALNECTE--WGQVFIL---DALSRYKAADAREAE---NIVERVTP--RLQH----------ANCAVVL 216 (632)
Q Consensus 157 ~l~~~~~~~Ll~~l~~~~e--w~qi~lL---~lL~~y~~~~~~~~~---~il~~v~~--~L~~----------~n~aVv~ 216 (632)
.+.......|.+.+.+.+. -....++ -++.-++-.+.++.. +.++.+.. .++. .+++|+-
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 2222233334444444432 2223334 444445556666666 34442221 1221 1357888
Q ss_pred HHHHHHHHhhhccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhC
Q 006763 217 SAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRR 271 (632)
Q Consensus 217 eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~ 271 (632)
+|+....-++..++ ...+........+.|..+| +.+.++|..|=++|..|....
T Consensus 205 aAL~aW~lLlt~~~-~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 205 AALSAWALLLTTLP-DSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 88777655544332 3233444556677788888 578999999999998886653
No 148
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=87.54 E-value=41 Score=35.42 Aligned_cols=209 Identities=12% Similarity=0.198 Sum_probs=125.4
Q ss_pred hcCCCcchHHHHHHHHHHhcCCCC----cHHHHHHH-HHHh---hc-CCCChHHHhHHHHHhcCCC-chhhHHHHHHH--
Q 006763 18 MQTENLELKKLVYLYLINYAKSQP----DLAILAVN-TFVK---DS-QDPNPLIRALAVRTMGCIR-VDKITEYLCDP-- 85 (632)
Q Consensus 18 ~~s~d~~~Krl~YLyl~~~~~~~~----el~lL~iN-tl~k---Dl-~~~np~ir~lALr~L~~I~-~~ei~~~l~~~-- 85 (632)
+-.+|-.+|-+..--+..+.+... ...++++| -+.| |+ -..|..+--.|+.++.+|. .|.-.+.+.+.
T Consensus 91 LiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSel 170 (524)
T KOG4413|consen 91 LIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESEL 170 (524)
T ss_pred ccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhccccc
Confidence 444555666655444444433221 12444555 3444 33 4567788888999999884 45555544432
Q ss_pred -----HHhhhCCCChHHHHHHHHHHHHhhhhccccc---cccchHHHHHHHhc-CCChhHHHHHHHHHHHHHhcCCCCch
Q 006763 86 -----LQRCLKDDDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPIF 156 (632)
Q Consensus 86 -----v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v---~~~~~~~~L~~lL~-D~d~~Vv~~Al~aL~eI~~~~~~~~~ 156 (632)
++++..-.+..+|-....-+.++|..+|+.. ...++++.|..-|+ -.|..|+++++-..+++.....+..|
T Consensus 171 lDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgref 250 (524)
T KOG4413|consen 171 LDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREF 250 (524)
T ss_pred CChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhh
Confidence 3444455778888888888999999998754 34678888777666 48999999999999999865433223
Q ss_pred hccHHHHHHHHHHhh--ccChhhHHHHHHHHhcc-ccCC-----HHH-HHH---HHHHHHHhhcCCCHHHHHHHHHHHHH
Q 006763 157 EITSHTLSKLLTALN--ECTEWGQVFILDALSRY-KAAD-----ARE-AEN---IVERVTPRLQHANCAVVLSAVKMILQ 224 (632)
Q Consensus 157 ~l~~~~~~~Ll~~l~--~~~ew~qi~lL~lL~~y-~~~~-----~~~-~~~---il~~v~~~L~~~n~aVv~eaik~i~~ 224 (632)
--....+..+++.+. +.+||..-.-|-...++ ...+ ++. .+. .++.......+.++.-.-.|+.++..
T Consensus 251 laQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGi 330 (524)
T KOG4413|consen 251 LAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGI 330 (524)
T ss_pred cchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHh
Confidence 223345667777775 56888876443333333 2211 111 111 22333344556677666677777765
Q ss_pred hh
Q 006763 225 QM 226 (632)
Q Consensus 225 ~~ 226 (632)
+.
T Consensus 331 lG 332 (524)
T KOG4413|consen 331 LG 332 (524)
T ss_pred cc
Confidence 53
No 149
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=87.33 E-value=16 Score=39.59 Aligned_cols=137 Identities=16% Similarity=0.235 Sum_probs=96.9
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHhcCCCCc--------HHHHHHHHHHhhcCCCChHHHhHHHHHhcC---C--Cchhh
Q 006763 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPD--------LAILAVNTFVKDSQDPNPLIRALAVRTMGC---I--RVDKI 78 (632)
Q Consensus 12 ~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~e--------l~lL~iNtl~kDl~~~np~ir~lALr~L~~---I--~~~ei 78 (632)
..+..++-+++-+++-.||=.+..+...... +-.+++=++.||.+ +..-|--|||.+-. + +..++
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~--~~~ER~QALkliR~~l~~~~~~~~~ 105 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNK--NDVEREQALKLIRAFLEIKKGPKEI 105 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCC--ChHHHHHHHHHHHHHHHhcCCcccC
Confidence 3344345556688999999877665543322 23455667777765 56777777776644 3 45577
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 006763 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (632)
Q Consensus 79 ~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~ 150 (632)
-..++..|..+..+++.-.|..|+..+..+.-.+|+++-..+=+..|.+.+.|.......+.+.++..+...
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~ 177 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS 177 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence 788889999999999999999999999999999999986544456666666676656656666677666543
No 150
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=87.13 E-value=27 Score=38.31 Aligned_cols=187 Identities=13% Similarity=0.200 Sum_probs=103.9
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHhhCc-ccHHHHH
Q 006763 314 LEFKEYATEVDVDFVRKAVRAIGRCAIKLERA----AERCISVLLELIKIKV-NYVVQEAIIVIKDIFRRYP-NTYESII 387 (632)
Q Consensus 314 ~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~----~~~~v~~Ll~ll~~~~-~~v~~e~i~~l~~ilr~~p-~~~~~ii 387 (632)
..|.+-..+.|+.=|..+-.-+.++-.++... -..+.+.+.+++.... .+-..|++..+..+++.+. ...+...
T Consensus 136 ~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~ 215 (409)
T PF01603_consen 136 KKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHK 215 (409)
T ss_dssp HHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHH
Confidence 33444444445444433333344444444332 2334455566665433 3566888888888888653 2333333
Q ss_pred HHHHHhh---ccCC-hhhHHHHHHHHHhcccCccCC-HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHH-
Q 006763 388 ATLCESL---DTLD-EPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQM- 461 (632)
Q Consensus 388 ~~L~~~l---~~i~-~p~a~~~~iWiLGEy~~~i~~-~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~- 461 (632)
..+.+.+ ...+ .+.-...+..++..|.+.-+. +..+++.++..++..++.-+...|.-+..++...++++..+.
T Consensus 216 ~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~ 295 (409)
T PF01603_consen 216 QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIM 295 (409)
T ss_dssp HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3333322 2222 222356667777777654332 678999999999999998888899999999877765433333
Q ss_pred --HHHHHHhhhcCCCChHHHhhHHHHHH------HhcCCHHHHHhhhc
Q 006763 462 --IQVVLNNATVETDNPDLRDRAYIYWR------LLSTDPEAAKDVVL 501 (632)
Q Consensus 462 --v~~ll~~~~~~s~~~dvrdRA~~y~~------LL~~~~~~~~~ivl 501 (632)
+-+.+..|. +|.+..|-+||..+|. +++.+.+..-.++.
T Consensus 296 ~~lf~~la~ci-~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~ 342 (409)
T PF01603_consen 296 VPLFKRLAKCI-SSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIF 342 (409)
T ss_dssp HHHHHHHHHHH-TSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHH
Confidence 333445565 5899999999998876 34444444444443
No 151
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=86.64 E-value=23 Score=33.95 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=45.2
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006763 296 KLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLEL 356 (632)
Q Consensus 296 kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~l 356 (632)
++.-+..=.++.|++.+++++.....+.+.+....+++.|-..+..-|.....|...+-.+
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l 63 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAAL 63 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHH
Confidence 4444444455999999999999877766888999999999888887776655555544443
No 152
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.32 E-value=77 Score=37.38 Aligned_cols=243 Identities=17% Similarity=0.196 Sum_probs=138.2
Q ss_pred cHHHHHHHHHHhhcCC----CChHHHhHHHHHhcCCCc---hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccc
Q 006763 42 DLAILAVNTFVKDSQD----PNPLIRALAVRTMGCIRV---DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE 114 (632)
Q Consensus 42 el~lL~iNtl~kDl~~----~np~ir~lALr~L~~I~~---~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~ 114 (632)
++.=-.+|.+.-||.+ .+|..++-|++.+--.|+ ++..-.++|.+.+.|...++-|-+-||.|+=|+......
T Consensus 452 dv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 452 DVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred cHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 3444567888899988 458999999998887764 577777888899999999999999999999998865443
Q ss_pred -cccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhh----ccChhhHHHHHHHHhccc
Q 006763 115 -LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN----ECTEWGQVFILDALSRYK 189 (632)
Q Consensus 115 -~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~----~~~ew~qi~lL~lL~~y~ 189 (632)
... -|.. .|-.|.|..... .|.+.++ .-+|+.--.|+|++....
T Consensus 532 ~~~~--if~~------~~iap~~~~ll~-----------------------nLf~a~s~p~~~EneylmKaImRii~i~~ 580 (960)
T KOG1992|consen 532 SNAK--IFGA------EDIAPFVEILLT-----------------------NLFKALSLPGKAENEYLMKAIMRIISILQ 580 (960)
T ss_pred cccc--ccch------hhcchHHHHHHH-----------------------HHHHhccCCcccccHHHHHHHHHHHHhCH
Confidence 000 0000 011121211111 1112211 124555555555554332
Q ss_pred c----CCHHHHHHHHHHHHHhhcC-CCH---HHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccCc-hhHHHHH
Q 006763 190 A----ADAREAENIVERVTPRLQH-ANC---AVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAE-PEIQYVA 260 (632)
Q Consensus 190 ~----~~~~~~~~il~~v~~~L~~-~n~---aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls~~-~niryva 260 (632)
. .-+.....+.+.+...-++ +|| .-+||++-+++..+.. .+++.+..+...+.+.+.+.++.| .|+-=.+
T Consensus 581 ~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~-~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYv 659 (960)
T KOG1992|consen 581 SAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCK-ANPSAVSSLEEALFPVFQTILSEDIQEFIPYV 659 (960)
T ss_pred HhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1112222333333333333 222 6788888887765543 256666666556666666667654 4555557
Q ss_pred HHHHHHHHhhCccchh-cccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHH
Q 006763 261 LRNINLIVQRRPTILA-HEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFV 328 (632)
Q Consensus 261 L~~l~~i~~~~p~~~~-~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~ 328 (632)
++.+..++..+...+- .+...|-++.++.. -....|+..++.-|..++......+.
T Consensus 660 fQlla~lve~~~~~ip~~~~~l~~~lLsp~l------------W~r~gNipalvrLl~aflk~g~~~~~ 716 (960)
T KOG1992|consen 660 FQLLAVLVEHSSGTIPDSYSPLFPPLLSPNL------------WKRSGNIPALVRLLQAFLKTGSQIVE 716 (960)
T ss_pred HHHHHHHHHhcCCCCchhHHHHHHHhcCHHH------------HhhcCCcHHHHHHHHHHHhcCchhhc
Confidence 7888877766543222 22223333322211 12457888888888877776554444
No 153
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=85.90 E-value=25 Score=38.71 Aligned_cols=164 Identities=17% Similarity=0.212 Sum_probs=100.1
Q ss_pred CCchhHHHHHHHHHHHhcCc-------ccHHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHH
Q 006763 287 NDPIYVKMEKLEIMIKLASD-------RNIDQVLLEFKEYATE-VDVDFVRKAVRAIGRCAIKLE----RAAERCISVLL 354 (632)
Q Consensus 287 ~dd~~Ik~~kL~lL~~L~n~-------~Ni~~Iv~EL~~yl~~-~d~~~~~~~i~aIg~la~k~~----~~~~~~v~~Ll 354 (632)
++..+=+..++.=|..|..+ +++.+|+.-+.+-+.+ .|...+..+.+.|+.+...-+ .+.+-.+..++
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 34555677777755555433 4477777777788877 566666677788887776533 34455555556
Q ss_pred HHHhhhchhhHHHHHHHHHHHHh-hCcccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCccCC------HHHHHHHH
Q 006763 355 ELIKIKVNYVVQEAIIVIKDIFR-RYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN------ADELLESF 427 (632)
Q Consensus 355 ~ll~~~~~~v~~e~i~~l~~ilr-~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~------~~~~l~~l 427 (632)
+--.+..+.+...+..-...++. ..|.. .|..++..|-..++|.+ .+++-++-+-.+.+.. -+++.-.+
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~---~I~~i~~~Ilt~D~~~~-~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~ 453 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQ---CIVNISPLILTADEPRA-VAVIKMLTKLFERLSAEELLNLLPDIAPCV 453 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchh---HHHHHhhHHhcCcchHH-HHHHHHHHHHHhhcCHHHHHHhhhhhhhHH
Confidence 65555566666665554333333 34433 34444554544445533 2334344444443321 35666777
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHhhcCC
Q 006763 428 LESFPEEPAQVQLQLLTATVKLFLKKP 454 (632)
Q Consensus 428 ~~~f~~e~~~vq~~iLta~~Kl~~~~p 454 (632)
++.|...++.||-..+-|++-++.+..
T Consensus 454 iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 454 IQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred HHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 888888899999999999998888776
No 154
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=85.36 E-value=1.3e+02 Score=39.32 Aligned_cols=127 Identities=15% Similarity=0.213 Sum_probs=85.1
Q ss_pred CcchHHHHHHHHHHhcCCC---CcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC-----chh-----hHHHHHHHHHh
Q 006763 22 NLELKKLVYLYLINYAKSQ---PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-----VDK-----ITEYLCDPLQR 88 (632)
Q Consensus 22 d~~~Krl~YLyl~~~~~~~---~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~-----~~e-----i~~~l~~~v~~ 88 (632)
-+.+.||+-+...+.-+.. +.+=-.+.+.|.+=-.++|..++-.|+.+|-.+. .+| .-+.++.++..
T Consensus 1110 ~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~ 1189 (1780)
T PLN03076 1110 VFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVI 1189 (1780)
T ss_pred hhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHH
Confidence 4667777777666654332 2333345566777666778778777777654432 223 23456666666
Q ss_pred hhCC-CChHHHHHHHHHHHHhhhhccccccccchHHH---HHHHhcCCChhHHHHHHHHHHHHHh
Q 006763 89 CLKD-DDPYVRKTAAICVAKLYDINAELVEDRGFLES---LKDLISDNNPMVVANAVAALAEIEE 149 (632)
Q Consensus 89 ~L~d-~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~---L~~lL~D~d~~Vv~~Al~aL~eI~~ 149 (632)
.+.+ .+.-||...+-|+.+|.....+.+.. ||... +.....|+++.++..|.-.+..|..
T Consensus 1190 im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~ 1253 (1780)
T PLN03076 1190 VMRKSNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 1253 (1780)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 5554 78899999999999999887777774 88544 4444568888888888887777754
No 155
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=85.12 E-value=1.5 Score=44.41 Aligned_cols=56 Identities=23% Similarity=0.449 Sum_probs=49.8
Q ss_pred HHHHHhhcCC--CChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHH
Q 006763 48 VNTFVKDSQD--PNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAK 107 (632)
Q Consensus 48 iNtl~kDl~~--~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~k 107 (632)
|.++.|-|.+ .+|++|..|..+|+.|..++-++. +++.+.|..+.||+.+..++--
T Consensus 220 i~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~~~v----L~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 220 IPSLIKVLLDETEHPMVRHEAAEALGAIADEDCVEV----LKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred hHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHHHHH----HHHHcCCcHHHHHHHHHHHHHH
Confidence 8889998876 589999999999999999987776 8899999999999999988753
No 156
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=85.08 E-value=60 Score=35.01 Aligned_cols=64 Identities=9% Similarity=0.080 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhCccchhcccc-eeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhh
Q 006763 258 YVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYAT 321 (632)
Q Consensus 258 yvaL~~l~~i~~~~p~~~~~~~~-~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~ 321 (632)
-+|-+-|-..-..+|++...-+. .|.|..++|..||+.|+.=|-..|..++...+.++|...+.
T Consensus 42 ~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 42 RLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 33444444445556665544333 56677788999999999999999999998888777766554
No 157
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=84.98 E-value=11 Score=36.43 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=72.1
Q ss_pred CcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHH--------------HHHHhhhCCCChHHHHHHHHHHH
Q 006763 41 PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLC--------------DPLQRCLKDDDPYVRKTAAICVA 106 (632)
Q Consensus 41 ~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~--------------~~v~~~L~d~~pyVRK~A~~al~ 106 (632)
-+...+++.-+.+. .++..........+..+.+.++++.+. +.+.+-..+.++++||.|+.+..
T Consensus 53 ~~~~~lal~~~~~~--~~~~~~~~~~~~~i~~~~~W~~~D~~~~~~~~~~~~~~~~~~~~~~w~~s~~~~~rR~~~~~~~ 130 (197)
T cd06561 53 REAQYLALDLLDKK--ELKEEDLERFEPWIEYIDNWDLVDSLCANLLGKLLYAEPELDLLEEWAKSENEWVRRAAIVLLL 130 (197)
T ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCcchHHHHHHHhCCcHHHHHHHHHHHH
Confidence 44555555554444 344444444444444555555554433 34667778899999999999999
Q ss_pred HhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCC
Q 006763 107 KLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (632)
Q Consensus 107 kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~ 152 (632)
+.+....+ .. .+++.+..++.|.+.-|.-+.--+|.++....+
T Consensus 131 ~~~~~~~~-~~--~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 131 RLIKKETD-FD--LLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHhccc-HH--HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 98876222 22 477888999999999998888888999887654
No 158
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.45 E-value=10 Score=42.36 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=77.0
Q ss_pred hhHHHHHhhc-CCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHH-----hHHHHHhcCCCchhhHHHHH
Q 006763 10 LFTDVVNCMQ-TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIR-----ALAVRTMGCIRVDKITEYLC 83 (632)
Q Consensus 10 lf~~vi~l~~-s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir-----~lALr~L~~I~~~ei~~~l~ 83 (632)
+.-++....+ ++.-.+||-.=+.+....--.+|++--.||-+..|. ++..| ++||-..+. ++..++..+
T Consensus 482 ai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~---ds~lRy~G~fs~alAy~GT-gn~~vv~~l- 556 (926)
T COG5116 482 AIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDK---DSILRYNGVFSLALAYVGT-GNLGVVSTL- 556 (926)
T ss_pred HHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCc---hHHhhhccHHHHHHHHhcC-CcchhHhhh-
Confidence 3444444333 455567776555555544445565555666665554 45555 344444333 333333332
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCC
Q 006763 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (632)
Q Consensus 84 ~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~ 152 (632)
+.-..+|.+.-|||.|++|+.-++-.+|+.+. ..++-|-...|+.|.+....+|.--|...+
T Consensus 557 --Lh~avsD~nDDVrRAAViAlGfvc~~D~~~lv-----~tvelLs~shN~hVR~g~AvaLGiacag~G 618 (926)
T COG5116 557 --LHYAVSDGNDDVRRAAVIALGFVCCDDRDLLV-----GTVELLSESHNFHVRAGVAVALGIACAGTG 618 (926)
T ss_pred --heeecccCchHHHHHHHHheeeeEecCcchhh-----HHHHHhhhccchhhhhhhHHHhhhhhcCCc
Confidence 23346789999999999999988888888654 333333445688887776666666665543
No 159
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.94 E-value=23 Score=40.93 Aligned_cols=193 Identities=18% Similarity=0.301 Sum_probs=103.2
Q ss_pred chhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhc----hhh
Q 006763 289 PIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV----NYV 364 (632)
Q Consensus 289 d~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~----~~v 364 (632)
....|..=+|+|....+...+..|.+.+.. .+.... ++.+.+..+......-....++.+.+|++... .++
T Consensus 377 ~~~~r~~~lDal~~aGT~~av~~i~~~I~~--~~~~~~---ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l 451 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGTNPAVKFIKDLIKS--KKLTDD---EAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYL 451 (618)
T ss_dssp -HHHHHHHHHHHHHH-SHHHHHHHHHHHHT--T-S-HH---HHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCHH---HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhH
Confidence 356788888888888887777666666554 222222 23344444443332234567777777776532 356
Q ss_pred HHHHHHHHHHHHhhC--------------cccHHHHHHHHHHhhc---cCChhhHHHHHHHHHhcccCccCCHHHHHHHH
Q 006763 365 VQEAIIVIKDIFRRY--------------PNTYESIIATLCESLD---TLDEPEAKASMIWIIGEYAERIDNADELLESF 427 (632)
Q Consensus 365 ~~e~i~~l~~ilr~~--------------p~~~~~ii~~L~~~l~---~i~~p~a~~~~iWiLGEy~~~i~~~~~~l~~l 427 (632)
...++..+..+++++ ....+.++..+.+.+. +-.+.+-+..++-.||.-|.. .....+..+
T Consensus 452 ~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~--~~i~~l~~~ 529 (618)
T PF01347_consen 452 RETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP--ESIPVLLPY 529 (618)
T ss_dssp HHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G--GGHHHHHTT
T ss_pred HHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc--hhhHHHHhH
Confidence 666666666655541 1122333444444343 122334466677778877752 233444444
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcCCHH
Q 006763 428 LESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 494 (632)
Q Consensus 428 ~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~~~~ 494 (632)
+..-...+..+|.+.+.|+-|+...+|.+ .++.+..++.. ...++|||=-|+ ..|+..+|.
T Consensus 530 i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-v~~~l~~I~~n---~~e~~EvRiaA~--~~lm~~~P~ 590 (618)
T PF01347_consen 530 IEGKEEVPHFIRVAAIQALRRLAKHCPEK-VREILLPIFMN---TTEDPEVRIAAY--LILMRCNPS 590 (618)
T ss_dssp STTSS-S-HHHHHHHHHTTTTGGGT-HHH-HHHHHHHHHH----TTS-HHHHHHHH--HHHHHT---
T ss_pred hhhccccchHHHHHHHHHHHHHhhcCcHH-HHHHHHHHhcC---CCCChhHHHHHH--HHHHhcCCC
Confidence 44433457888999999988887767754 66666666663 456788887774 667776553
No 160
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=83.84 E-value=1.5 Score=31.59 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=24.2
Q ss_pred HHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHH
Q 006763 104 CVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAA 143 (632)
Q Consensus 104 al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~a 143 (632)
|+..+...+|+......+.+.+...+.|.+++|.-+|+-+
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3455556666666555566666666666666666666543
No 161
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=83.63 E-value=1.6 Score=42.88 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=58.3
Q ss_pred HHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccccc
Q 006763 50 TFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (632)
Q Consensus 50 tl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~ 117 (632)
.+.+=++|+|+..|-.|+-++......+-.+.+...+...+.|++.||||...-++..++..+|+.+.
T Consensus 124 ~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 124 LLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp HHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHH
Confidence 34445578999999999999888877788889999999999999999999999999999999999876
No 162
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=83.25 E-value=68 Score=34.21 Aligned_cols=101 Identities=22% Similarity=0.423 Sum_probs=59.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhh----------hccCChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHH
Q 006763 198 NIVERVTPRLQHANCAVVLSAVKMILQQM----------ELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINL 266 (632)
Q Consensus 198 ~il~~v~~~L~~~n~aVv~eaik~i~~~~----------~~i~~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~ 266 (632)
.+......+|++.|.-....++|++..++ .++++++.++. ++.||+ ++.+||+-|...+..
T Consensus 209 ~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl--------~M~lL~d~sk~Iq~eAFhvFKv 280 (335)
T PF08569_consen 209 RFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKL--------MMNLLRDKSKNIQFEAFHVFKV 280 (335)
T ss_dssp HHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHH--------HHHHTT-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHH--------HHHHhcCcchhhhHHHHHHHHH
Confidence 44455556788888888888888887654 23334443332 345664 678999999888877
Q ss_pred HHhhCccchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhc--CHHHHHH
Q 006763 267 IVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEV--DVDFVRK 330 (632)
Q Consensus 267 i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~--d~~~~~~ 330 (632)
.+.. | +.|..| .+||. .|-+.++.-|..|..+. |.+|..+
T Consensus 281 FVAN-p--------------~K~~~I----~~iL~-----~Nr~kLl~fl~~f~~~~~~D~qf~~E 322 (335)
T PF08569_consen 281 FVAN-P--------------NKPPPI----VDILI-----KNREKLLRFLKDFHTDRTDDEQFEDE 322 (335)
T ss_dssp HHH--S--------------S-BHHH----HHHHH-----HTHHHHHHHHHTTTTT--S-CHHHHH
T ss_pred HHhC-C--------------CCChHH----HHHHH-----HHHHHHHHHHHhCCCCCCccccHHHH
Confidence 6653 2 333333 23443 36666777777777654 6666654
No 163
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.15 E-value=19 Score=41.71 Aligned_cols=136 Identities=21% Similarity=0.217 Sum_probs=83.4
Q ss_pred CCCCcchhHHHHHhhc-CCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhH-----HHHHhcCCCchh
Q 006763 4 GKDVSSLFTDVVNCMQ-TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRAL-----AVRTMGCIRVDK 77 (632)
Q Consensus 4 G~Dvs~lf~~vi~l~~-s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~l-----ALr~L~~I~~~e 77 (632)
|.--...+-++....+ ++.-.++|=.-+.+....--..|.+-=.|+.+ +.|.||..|.- ||-..+. ++..
T Consensus 479 Gt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el---~~dkdpilR~~Gm~t~alAy~GT-gnnk 554 (929)
T KOG2062|consen 479 GTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKEL---LRDKDPILRYGGMYTLALAYVGT-GNNK 554 (929)
T ss_pred CcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHH---hcCCchhhhhhhHHHHHHHHhcc-Cchh
Confidence 4444555666666544 55555666544444443333334344344444 45568888854 3333232 2233
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhc-CCChhHHHHHHHHHHHHHhcCC
Q 006763 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSS 152 (632)
Q Consensus 78 i~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~-D~d~~Vv~~Al~aL~eI~~~~~ 152 (632)
.+..+ +.=..+|.+.-|||.|++++.-+.-.+|+.++ ....+|. .-||.|.+.|..+|.--|...+
T Consensus 555 air~l---Lh~aVsD~nDDVrRaAVialGFVl~~dp~~~~------s~V~lLses~N~HVRyGaA~ALGIaCAGtG 621 (929)
T KOG2062|consen 555 AIRRL---LHVAVSDVNDDVRRAAVIALGFVLFRDPEQLP------STVSLLSESYNPHVRYGAAMALGIACAGTG 621 (929)
T ss_pred hHHHh---hcccccccchHHHHHHHHHheeeEecChhhch------HHHHHHhhhcChhhhhhHHHHHhhhhcCCC
Confidence 33332 23346789999999999999999889999775 2344454 5799999998888877776543
No 164
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=82.98 E-value=75 Score=35.22 Aligned_cols=155 Identities=15% Similarity=0.242 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhhc----cChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhh----cC-CCH---HHHHHHHHHHHHhhh
Q 006763 160 SHTLSKLLTALNE----CTEWGQVFILDALSRYKAADAREAENIVERVTPRL----QH-ANC---AVVLSAVKMILQQME 227 (632)
Q Consensus 160 ~~~~~~Ll~~l~~----~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L----~~-~n~---aVv~eaik~i~~~~~ 227 (632)
...+.+|+..+.. -||+.--.+||++..+...-...+..+++.+...+ ++ +|+ =-+||++.+++.+..
T Consensus 25 ~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~ 104 (435)
T PF03378_consen 25 QQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVC 104 (435)
T ss_dssp HHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhcc
Confidence 4445556655543 37777777888887665443333445555554443 22 444 468999998888643
Q ss_pred ccCChHHHHHHHHhcccchhhhccCc-hhHHHHHHHHHHHHHhhCc-cchhcccc-eeEeccCCchhHHHHHHHHHHHhc
Q 006763 228 LITSTDVVRNLCKKMAPPLVTLLSAE-PEIQYVALRNINLIVQRRP-TILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLA 304 (632)
Q Consensus 228 ~i~~~~~~~~~~~~~~~~L~~Lls~~-~niryvaL~~l~~i~~~~p-~~~~~~~~-~f~~l~~dd~~Ik~~kL~lL~~L~ 304 (632)
. .+++.+.++-..+.+++..+|..| .|.-=.+++.+..++..+| .-+.+.+. .|-++.++..- -
T Consensus 105 ~-~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lW------------e 171 (435)
T PF03378_consen 105 E-ADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALW------------E 171 (435)
T ss_dssp G-GGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGG------------G
T ss_pred C-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchh------------c
Confidence 2 245555556566778888888655 4555556888888888887 33433333 33334333221 3
Q ss_pred CcccHHHHHHHHHHhhhhcCHHH
Q 006763 305 SDRNIDQVLLEFKEYATEVDVDF 327 (632)
Q Consensus 305 n~~Ni~~Iv~EL~~yl~~~d~~~ 327 (632)
...|+..++.-|..|++.....+
T Consensus 172 ~~gniPalvrLL~a~i~k~~~~i 194 (435)
T PF03378_consen 172 RRGNIPALVRLLQAYIKKDPSFI 194 (435)
T ss_dssp STTTHHHHHHHHHHHHHHHGGG-
T ss_pred cCCCcCcHHHHHHHHHHhCchhh
Confidence 56799999999988987655444
No 165
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.98 E-value=5.6 Score=44.37 Aligned_cols=127 Identities=22% Similarity=0.188 Sum_probs=68.3
Q ss_pred HHHH-hhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHh-hcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhh
Q 006763 13 DVVN-CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVK-DSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCL 90 (632)
Q Consensus 13 ~vi~-l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~k-Dl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L 90 (632)
+.|+ ++.+.|..+|--|-+.+..-.--.... =++.++.. -.+|.|..+|-.|.-+++-++..+ +.+++...+.|
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn~--~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--~~~lv~tvelL 594 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTGNL--GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--RDLLVGTVELL 594 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCCcc--hhHhhhheeecccCchHHHHHHHHheeeeEecC--cchhhHHHHHh
Confidence 3444 556666666655544433322111111 12334333 356677777777777777665443 22223333334
Q ss_pred C-CCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHH
Q 006763 91 K-DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (632)
Q Consensus 91 ~-d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI 147 (632)
. +.+++||--.++++.-.+.-..+.+ -++.|..|..|.+.-|..+|..++.-|
T Consensus 595 s~shN~hVR~g~AvaLGiacag~G~~~----a~diL~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 595 SESHNFHVRAGVAVALGIACAGTGDKV----ATDILEALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred hhccchhhhhhhHHHhhhhhcCCccHH----HHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 3 4677777777776654443332322 457777777777777776666665544
No 166
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.29 E-value=84 Score=37.27 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=54.7
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHhhh--hccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCC
Q 006763 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYD--INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (632)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~A~~al~kl~~--~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~ 153 (632)
.........+.|+-+-+|--|+.-+.++++ .....+...+.++...+.|.|.|+-|-.||+..+.-+|...+.
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e 801 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE 801 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch
Confidence 334555666778889999999999999998 3334444457788999999999999988888865555554443
No 167
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=82.29 E-value=79 Score=34.73 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=59.6
Q ss_pred HHHhHHHHHhcCCCchh----hHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccc--cchHHHHHHHhc-CCC
Q 006763 61 LIRALAVRTMGCIRVDK----ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLIS-DNN 133 (632)
Q Consensus 61 ~ir~lALr~L~~I~~~e----i~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~--~~~~~~L~~lL~-D~d 133 (632)
.+=..=+|.+.+-.... +-..++..+..++.+++|.-|...-..++++|.+.+..-.. ..+.+.+.+.+. ...
T Consensus 109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~ 188 (409)
T PF01603_consen 109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETER 188 (409)
T ss_dssp HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCccc
Confidence 34455667777655544 66678888999999999999999999999999988776441 122344444444 456
Q ss_pred hhHHHHHHHHHHHHHhc
Q 006763 134 PMVVANAVAALAEIEEN 150 (632)
Q Consensus 134 ~~Vv~~Al~aL~eI~~~ 150 (632)
+..++..+-.+..|...
T Consensus 189 ~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 189 HNGIAELLEILGSIING 205 (409)
T ss_dssp -STHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHhc
Confidence 67777888888777653
No 168
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=82.01 E-value=92 Score=34.80 Aligned_cols=373 Identities=12% Similarity=0.084 Sum_probs=167.4
Q ss_pred HHhHHHHHhcCCC---chhhHHHHHHHHHhhhCCC-ChHHHHHHHHHHHHhhhhcccccc--ccchHHHHHHHhcCCChh
Q 006763 62 IRALAVRTMGCIR---VDKITEYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAELVE--DRGFLESLKDLISDNNPM 135 (632)
Q Consensus 62 ir~lALr~L~~I~---~~ei~~~l~~~v~~~L~d~-~pyVRK~A~~al~kl~~~~p~~v~--~~~~~~~L~~lL~D~d~~ 135 (632)
-|.-|++.++... ..+-++.+-...+.++.+. .+.+|+.|..-+..+.+..-+... ...|...+.. ..++.
T Consensus 6 ~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~---~~~~~ 82 (464)
T PF11864_consen 6 ERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISD---PSNDD 82 (464)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhc---CCCch
Confidence 4555666655431 1155566777788888775 456888887777777665444111 1223333322 22333
Q ss_pred HHHHHHHHHHHHHhcCCCCchhcc---HHHHHHHHHHhh------------------------ccChhhHHHHHHHHhc-
Q 006763 136 VVANAVAALAEIEENSSRPIFEIT---SHTLSKLLTALN------------------------ECTEWGQVFILDALSR- 187 (632)
Q Consensus 136 Vv~~Al~aL~eI~~~~~~~~~~l~---~~~~~~Ll~~l~------------------------~~~ew~qi~lL~lL~~- 187 (632)
..-.-+.+|..+..++ .+.-.+. .+.+.+.+..+- +..+=....+|+++..
T Consensus 83 d~~~~l~aL~~LT~~G-rdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nv 161 (464)
T PF11864_consen 83 DFDLRLEALIALTDNG-RDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNV 161 (464)
T ss_pred hHHHHHHHHHHHHcCC-cCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHH
Confidence 3333344444444333 2221111 122222222110 0011122345555543
Q ss_pred --cc--cCCHHHHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHhh--hccCChHHHHHHHHhcccchhhhccCchhHHHHH
Q 006763 188 --YK--AADAREAENIVERVTPR-LQHANCAVVLSAVKMILQQM--ELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVA 260 (632)
Q Consensus 188 --y~--~~~~~~~~~il~~v~~~-L~~~n~aVv~eaik~i~~~~--~~i~~~~~~~~~~~~~~~~L~~Lls~~~niryva 260 (632)
|. .-++++...+++.+... .+.+++..+..|++++-... ..+++.. +.. ++..|++..+.. +..=.+
T Consensus 162 iKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s-l~~----~i~vLCsi~~~~-~l~~~~ 235 (464)
T PF11864_consen 162 IKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES-LSP----CIEVLCSIVNSV-SLCKPS 235 (464)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH-HHH----HHHHHhhHhccc-ccchhH
Confidence 22 33556677777766654 45666666666666654332 2344433 222 233333333211 333344
Q ss_pred HHHHHHHHhhCcc--chhccccee--E-eccCCchhHHHHHHHHHHHhcCcc---cHH-----H--HHHHHHHhhhhcCH
Q 006763 261 LRNINLIVQRRPT--ILAHEIKVF--F-CKYNDPIYVKMEKLEIMIKLASDR---NID-----Q--VLLEFKEYATEVDV 325 (632)
Q Consensus 261 L~~l~~i~~~~p~--~~~~~~~~f--~-~l~~dd~~Ik~~kL~lL~~L~n~~---Ni~-----~--Iv~EL~~yl~~~d~ 325 (632)
.+.+..|+..+-. .+..-..++ . -...++..+-+=|+.++-.+.-.. .+. . ++..|..=++..+.
T Consensus 236 w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~ 315 (464)
T PF11864_consen 236 WRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSP 315 (464)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCC
Confidence 5555555543311 111101111 0 011234556667888887765332 222 2 66776665654443
Q ss_pred HHHHHHHHHHHHHH-Hhhh-----hhHHHHHHHHHHHHhhhch------------hh---HHHHHHHHHHHHhh--Cccc
Q 006763 326 DFVRKAVRAIGRCA-IKLE-----RAAERCISVLLELIKIKVN------------YV---VQEAIIVIKDIFRR--YPNT 382 (632)
Q Consensus 326 ~~~~~~i~aIg~la-~k~~-----~~~~~~v~~Ll~ll~~~~~------------~v---~~e~i~~l~~ilr~--~p~~ 382 (632)
-+--+++..+..+- .+|. .+.+..++++..++..... .+ ..+.+..+..+..+ +...
T Consensus 316 ~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~ 395 (464)
T PF11864_consen 316 RVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGP 395 (464)
T ss_pred eehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCcc
Confidence 33334444444444 3332 2233445555554333211 11 11222233333333 1123
Q ss_pred HHHHHHHHHHhhccCChhhHHHHHHHHHhcccCcc-CC--HHHHHHHHhhhCC--CCCHHHHHHHHHHHH
Q 006763 383 YESIIATLCESLDTLDEPEAKASMIWIIGEYAERI-DN--ADELLESFLESFP--EEPAQVQLQLLTATV 447 (632)
Q Consensus 383 ~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i-~~--~~~~l~~l~~~f~--~e~~~vq~~iLta~~ 447 (632)
++.+...+.+......+..+...+ ..+..... .+ -.+-+..++++|- ..+++||...|..+.
T Consensus 396 ~~~~~~f~~~~~~~lp~s~~~~vl---~~~~~~~~Ps~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~ 462 (464)
T PF11864_consen 396 KDKLFNFFERVHSYLPDSSALLVL---FYEERSCSPSNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVLE 462 (464)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHH---HHHhcccCCCChHHHHHHHHHHHHHhCCCCCchHHHHHHHHHh
Confidence 455565555555555554444433 22221111 12 2444555555543 456888888887654
No 169
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=81.77 E-value=29 Score=36.50 Aligned_cols=143 Identities=17% Similarity=0.236 Sum_probs=74.8
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccH--------HHHHHHHHHhhccChhhHHHHHHHHhccccCC
Q 006763 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS--------HTLSKLLTALNECTEWGQVFILDALSRYKAAD 192 (632)
Q Consensus 121 ~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~--------~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~ 192 (632)
|+..|..+ ..+..++...+..+.++...++. ..++.. ..+..+++.+...+.+.+.....+|+.+....
T Consensus 60 ~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~-~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 60 FLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPS-RVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp --HHHHHH-----HHHHHHHHHHHHHHHH-SSS-SHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 44445544 46778888888888888877653 222211 14566777666678888877777776554322
Q ss_pred ---HHH-HHHHHHHHHHhh----cCCCHHHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhhc------c--Cchh
Q 006763 193 ---ARE-AENIVERVTPRL----QHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLL------S--AEPE 255 (632)
Q Consensus 193 ---~~~-~~~il~~v~~~L----~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~-~~~~~~L~~Ll------s--~~~n 255 (632)
... ...+++.+...+ ++.+..+..-|++++..++. .++....+. .+.++.+..++ + ....
T Consensus 137 ~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~---~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 137 PKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR---SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT---SHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred CccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC---cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 111 123444444444 44455566777777776642 444333322 23344555555 2 2457
Q ss_pred HHHHHHHHHHHHHh
Q 006763 256 IQYVALRNINLIVQ 269 (632)
Q Consensus 256 iryvaL~~l~~i~~ 269 (632)
++|-++-++..+.-
T Consensus 214 l~Y~~ll~lWlLSF 227 (312)
T PF03224_consen 214 LQYQALLCLWLLSF 227 (312)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888887753
No 170
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=81.61 E-value=35 Score=38.55 Aligned_cols=167 Identities=22% Similarity=0.252 Sum_probs=94.1
Q ss_pred cCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhh-----------ccChhhHHHHHHHHhccccCCHHHHHH
Q 006763 130 SDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN-----------ECTEWGQVFILDALSRYKAADAREAEN 198 (632)
Q Consensus 130 ~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~-----------~~~ew~qi~lL~lL~~y~~~~~~~~~~ 198 (632)
.|.+..|...|-..|-.+... |+ ....+.+|..... -.++-.|.+||.+|.+=... ......
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~-----~e-d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-a~~~~~ 319 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVS-----LE-DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-ATSFPN 319 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCC-----CC-CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH-HhCCcc
Confidence 467777766665555444322 21 2334555655544 24778899999999763210 011234
Q ss_pred HHHHHHHhhcCC--CHHHHHHHHHHH---HHhhhccCChHHHHHHHHhcccchhhhc---------cCchhHHHHHHHHH
Q 006763 199 IVERVTPRLQHA--NCAVVLSAVKMI---LQQMELITSTDVVRNLCKKMAPPLVTLL---------SAEPEIQYVALRNI 264 (632)
Q Consensus 199 il~~v~~~L~~~--n~aVv~eaik~i---~~~~~~i~~~~~~~~~~~~~~~~L~~Ll---------s~~~niryvaL~~l 264 (632)
++..+...+.+. ++-+.-.++..+ ......+ .+..++.+...+...+..++ +.+.+.|-.+-++|
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~-~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~l 398 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHI-SPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETL 398 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhc-CHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHH
Confidence 566666677766 443333444444 2222222 34444433322332222333 23568999999999
Q ss_pred HHHHhhCccchhcccc---e-eEeccCCchhHHHHHHHHHHHhc
Q 006763 265 NLIVQRRPTILAHEIK---V-FFCKYNDPIYVKMEKLEIMIKLA 304 (632)
Q Consensus 265 ~~i~~~~p~~~~~~~~---~-f~~l~~dd~~Ik~~kL~lL~~L~ 304 (632)
..|+++.|.+|...+. . |..+.+++..+|.-.-+.|..|+
T Consensus 399 G~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 399 GLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLA 442 (501)
T ss_pred HHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence 9999999999966543 2 33455666777776666666655
No 171
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=81.55 E-value=9.8 Score=36.12 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=59.6
Q ss_pred chhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhc-cccccc--cchHHHHHHHhcCC-ChhHHHHHHHHHHHHHhc
Q 006763 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AELVED--RGFLESLKDLISDN-NPMVVANAVAALAEIEEN 150 (632)
Q Consensus 75 ~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~-p~~v~~--~~~~~~L~~lL~D~-d~~Vv~~Al~aL~eI~~~ 150 (632)
....+..+...+.+++++++++-|..++.-+....+.+ ++.+.. ..|+..+...|+.. .+.+...|+.++..|...
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 45667788888999999999999998888777778876 666622 36888899988864 456677888888887654
Q ss_pred C
Q 006763 151 S 151 (632)
Q Consensus 151 ~ 151 (632)
.
T Consensus 99 ~ 99 (165)
T PF08167_consen 99 I 99 (165)
T ss_pred h
Confidence 3
No 172
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=81.47 E-value=21 Score=32.46 Aligned_cols=88 Identities=18% Similarity=0.142 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC---c----hhhHH-HHHHHHHhhhCC---CCh
Q 006763 27 KLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKITE-YLCDPLQRCLKD---DDP 95 (632)
Q Consensus 27 rl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~---~----~ei~~-~l~~~v~~~L~d---~~p 95 (632)
--+-+.++-....+++.+..++..|+|=++++||.++-+||..+-.+. . .++.. .....+.+.+.. .++
T Consensus 18 ~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~ 97 (133)
T cd03561 18 WALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDP 97 (133)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCH
Confidence 334455555666667778888999999999999999988888775542 1 12222 333356666654 577
Q ss_pred HHHHHHHHHHHHhhhhccc
Q 006763 96 YVRKTAAICVAKLYDINAE 114 (632)
Q Consensus 96 yVRK~A~~al~kl~~~~p~ 114 (632)
-||+++...+.......+.
T Consensus 98 ~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 98 KVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 8888888877766654443
No 173
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=80.96 E-value=9.3 Score=36.11 Aligned_cols=112 Identities=18% Similarity=0.230 Sum_probs=75.2
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHhhccCChh---hHHHHHHHHHhcccCccCCHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 006763 369 IIVIKDIFRRYPNTYESIIATLCESLDTLDEP---EAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTA 445 (632)
Q Consensus 369 i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p---~a~~~~iWiLGEy~~~i~~~~~~l~~l~~~f~~e~~~vq~~iLta 445 (632)
...+..+++.++..+..+++.+.+.+-..... .-.....|++-.+...+.+...-++.+++.+..-+.++-..++.|
T Consensus 39 ~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~A 118 (158)
T PF14676_consen 39 IQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRA 118 (158)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35677777788888888888887765432221 123444555655655566666677778888888899998899999
Q ss_pred HHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHH
Q 006763 446 TVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAY 483 (632)
Q Consensus 446 ~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~ 483 (632)
+.=+.--.+. .++.+-.+|..+.. +.+.+.|.-|.
T Consensus 119 l~PLi~~s~~--lrd~lilvLRKamf-~r~~~~R~~Av 153 (158)
T PF14676_consen 119 LLPLIKFSPS--LRDSLILVLRKAMF-SRELDARQMAV 153 (158)
T ss_dssp HHHHHTT-HH--HHHHHHHHHHHHTT--SSHHHHHHHH
T ss_pred HHHHHhcCHH--HHHHHHHHHHHHHc-cccHHHHHHHH
Confidence 9988766664 89999999998864 57778887664
No 174
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.86 E-value=98 Score=34.38 Aligned_cols=92 Identities=22% Similarity=0.277 Sum_probs=56.7
Q ss_pred CCchhHHHHHHHHHHHhc-CcccHHHHHHHH--HHhhhh------cCHHHHHHHHHHHHHHHHhhhh----hHHHHHHHH
Q 006763 287 NDPIYVKMEKLEIMIKLA-SDRNIDQVLLEF--KEYATE------VDVDFVRKAVRAIGRCAIKLER----AAERCISVL 353 (632)
Q Consensus 287 ~dd~~Ik~~kL~lL~~L~-n~~Ni~~Iv~EL--~~yl~~------~d~~~~~~~i~aIg~la~k~~~----~~~~~v~~L 353 (632)
+++.+.-.+.|-+|..|. +.--+..|+++. ..|+++ ..++++-+.|-++|.+|....- .....++++
T Consensus 516 d~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tl 595 (791)
T KOG1222|consen 516 DNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTL 595 (791)
T ss_pred CchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHH
Confidence 334555455555555543 234466666643 245443 2356888889999988765322 123578999
Q ss_pred HHHHhhhc--hhhHHHHHHHHHHHHhh
Q 006763 354 LELIKIKV--NYVVQEAIIVIKDIFRR 378 (632)
Q Consensus 354 l~ll~~~~--~~v~~e~i~~l~~ilr~ 378 (632)
+++++... +.++-.++.++.++++.
T Consensus 596 ieLL~a~QeDDEfV~QiiyVF~Q~l~H 622 (791)
T KOG1222|consen 596 IELLQACQEDDEFVVQIIYVFLQFLKH 622 (791)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 99998653 45555677788777765
No 175
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=80.64 E-value=20 Score=33.22 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCc---h----hh-HHHHHHHHHhhhC-CCChHHHH
Q 006763 29 VYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV---D----KI-TEYLCDPLQRCLK-DDDPYVRK 99 (632)
Q Consensus 29 ~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~---~----ei-~~~l~~~v~~~L~-d~~pyVRK 99 (632)
.-+-++-....+++-..-++..|+|-++++||.+.-+||..|-.+.. . ++ -..+...+.+++. ..++-||+
T Consensus 24 ~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~ 103 (142)
T cd03569 24 SILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQ 103 (142)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHH
Confidence 33455555666666777889999999999999999999876654311 1 11 1233444555554 57778888
Q ss_pred HHHHHHHHhhh
Q 006763 100 TAAICVAKLYD 110 (632)
Q Consensus 100 ~A~~al~kl~~ 110 (632)
+++..+.....
T Consensus 104 kil~li~~W~~ 114 (142)
T cd03569 104 KILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHH
Confidence 87776665544
No 176
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=80.22 E-value=25 Score=35.54 Aligned_cols=128 Identities=18% Similarity=0.220 Sum_probs=70.4
Q ss_pred hhCCCChHHHHHHHHHHHHhhhhccccc------cc-----cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcC-CCCch
Q 006763 89 CLKDDDPYVRKTAAICVAKLYDINAELV------ED-----RGFLESLKDLISDNNPMVVANAVAALAEIEENS-SRPIF 156 (632)
Q Consensus 89 ~L~d~~pyVRK~A~~al~kl~~~~p~~v------~~-----~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~-~~~~~ 156 (632)
+++|.++-|.|+|+.|...+|+.-=+.+ ++ ..+.+.+..++.+.+++|..+|+..+..+.... ++..-
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 4789999999999999999998632222 10 123455666788889999999999887764321 11000
Q ss_pred hccHHHHHH--HHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHhh
Q 006763 157 EITSHTLSK--LLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHAN--CAVVLSAVKMILQQM 226 (632)
Q Consensus 157 ~l~~~~~~~--Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n--~aVv~eaik~i~~~~ 226 (632)
.-....-.. =+..+..-.|.....-| +.|+..+++.+...+++.. +.++..+++++..+.
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~L----------e~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Ia 144 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQL----------EAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIA 144 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHH----------HHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHH
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHH----------HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 000000000 00001111122211111 3577788999888887654 667777777666543
No 177
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=80.13 E-value=2.5 Score=48.30 Aligned_cols=102 Identities=16% Similarity=0.271 Sum_probs=62.5
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCc--HHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCc----hhhHHHHH
Q 006763 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPD--LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV----DKITEYLC 83 (632)
Q Consensus 10 lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~e--l~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~----~ei~~~l~ 83 (632)
+.+.+++++.++|-.+|-+..-|+..|.+.=++ +---+...+..-+.|+|+.+|..+|++|..+.. ..+-..+.
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ell 410 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELL 410 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHH
Confidence 445666677777777777766677766654322 122234556666777777777777777766532 12333455
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHhhhh
Q 006763 84 DPLQRCLKDDDPYVRKTAAICVAKLYDI 111 (632)
Q Consensus 84 ~~v~~~L~d~~pyVRK~A~~al~kl~~~ 111 (632)
..+.+.-.|.++-+|-+..+|+.|+-..
T Consensus 411 r~~ar~q~d~~~~irtntticlgki~~~ 438 (690)
T KOG1243|consen 411 RYLARLQPDEHGGIRTNTTICLGKIAPH 438 (690)
T ss_pred HHHHhhCccccCcccccceeeecccccc
Confidence 5555555667777777777777776543
No 178
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=79.81 E-value=1e+02 Score=33.88 Aligned_cols=264 Identities=13% Similarity=0.140 Sum_probs=146.6
Q ss_pred HHHHHhhc-CCCcchHHHHHHHHHHhcCCC--------CcHHHHHHHHHHh--hcCCCC----hHHHhHHHHHhcCCCch
Q 006763 12 TDVVNCMQ-TENLELKKLVYLYLINYAKSQ--------PDLAILAVNTFVK--DSQDPN----PLIRALAVRTMGCIRVD 76 (632)
Q Consensus 12 ~~vi~l~~-s~d~~~Krl~YLyl~~~~~~~--------~el~lL~iNtl~k--Dl~~~n----p~ir~lALr~L~~I~~~ 76 (632)
++.+++++ +.+....-|++-.+--.++.+ ..+..-.+|-++| |+.++. .+-|+.-|-.+-..+.+
T Consensus 226 ~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe 305 (604)
T KOG4500|consen 226 FMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE 305 (604)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch
Confidence 34455554 345555556555444333321 1145555666664 777654 45566666666666666
Q ss_pred hhHH-----HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccccc--ccchHHHHHHHhc-----CCChhHHHHHHHHH
Q 006763 77 KITE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE--DRGFLESLKDLIS-----DNNPMVVANAVAAL 144 (632)
Q Consensus 77 ei~~-----~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~--~~~~~~~L~~lL~-----D~d~~Vv~~Al~aL 144 (632)
+|-. .+...+...+.+.+...--++++++..+.|.|...+. +.++++.|..+|. |.|..++.+++++|
T Consensus 306 SMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsAL 385 (604)
T KOG4500|consen 306 SMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSAL 385 (604)
T ss_pred HHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHH
Confidence 6432 3566678888888888999999999999987764332 2467788777764 56778889999999
Q ss_pred HHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHH------HHHHHHHHHhhcCCCHH-HHHH
Q 006763 145 AEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA------ENIVERVTPRLQHANCA-VVLS 217 (632)
Q Consensus 145 ~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~------~~il~~v~~~L~~~n~a-Vv~e 217 (632)
-.+.---+....-+.......+|..++--.|--+-+++-.++.....-+.-+ ..+++++..+-++.+.+ |.-|
T Consensus 386 Rnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gE 465 (604)
T KOG4500|consen 386 RNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGE 465 (604)
T ss_pred HhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhh
Confidence 7654211111111112234455555655455444555555544332211111 24566677777777765 9999
Q ss_pred HHHHHHHhhhccCChHHHHHHHHh-cccchhhhc-cCchhHHHHHHHHHHHHHhhCccch
Q 006763 218 AVKMILQQMELITSTDVVRNLCKK-MAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTIL 275 (632)
Q Consensus 218 aik~i~~~~~~i~~~~~~~~~~~~-~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~ 275 (632)
.-|++..+..+-...+.+.++.++ .+..+++.+ +.+-+++--+|-.+..+...++...
T Consensus 466 SnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~yl~~~ 525 (604)
T KOG4500|consen 466 SNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKYLIVI 525 (604)
T ss_pred hhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHhcccc
Confidence 999887654321111122221111 111233333 2344566666666666665555443
No 179
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=79.79 E-value=23 Score=40.00 Aligned_cols=126 Identities=19% Similarity=0.172 Sum_probs=83.0
Q ss_pred CCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCC--ChHHHhHHHHHh---cCC---CchhhHH----HHHHHHH
Q 006763 20 TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDP--NPLIRALAVRTM---GCI---RVDKITE----YLCDPLQ 87 (632)
Q Consensus 20 s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~--np~ir~lALr~L---~~I---~~~ei~~----~l~~~v~ 87 (632)
+..+..|-|.||-=+..+....+.. +..+...+.++ |.-.|.+++.++ ..+ ..+.++. .+.....
T Consensus 296 ~~~lq~kIL~~L~kS~~Aa~~~~~~---~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~ 372 (501)
T PF13001_consen 296 SPRLQEKILSLLSKSVIAATSFPNI---LQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGW 372 (501)
T ss_pred CHHHHHHHHHHHHHhHHHHhCCccH---HHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCc
Confidence 3445566667766665555443322 22334466666 778999999999 433 2344444 4444444
Q ss_pred hhhC--------CCChHHHHHHHHHHHHhhhhccccc-cccchHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 006763 88 RCLK--------DDDPYVRKTAAICVAKLYDINAELV-EDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (632)
Q Consensus 88 ~~L~--------d~~pyVRK~A~~al~kl~~~~p~~v-~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~ 148 (632)
+.+. ..+.-.|..|+.|+..+.+..|..+ .+-.++..+-+-|.+.++.|..+.--+|..+.
T Consensus 373 p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 373 PLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLA 442 (501)
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence 5552 2577899999999999999999998 44456666666677888888877666665553
No 180
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=79.65 E-value=96 Score=33.55 Aligned_cols=170 Identities=10% Similarity=0.051 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhhhccccccc--cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCc---------hh--cc-----H
Q 006763 99 KTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI---------FE--IT-----S 160 (632)
Q Consensus 99 K~A~~al~kl~~~~p~~v~~--~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~---------~~--l~-----~ 160 (632)
--+..++-++....|+.... ..|++.+...+.+....+...|+.++.++...-+++. ++ +. .
T Consensus 152 ~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~ 231 (372)
T PF12231_consen 152 SERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQ 231 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHH
Confidence 34445555666666655432 2477777776667777777777777766643221110 00 00 0
Q ss_pred HHHHHHHHHhhc---cChhhHH--HHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhcc-CChHH
Q 006763 161 HTLSKLLTALNE---CTEWGQV--FILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELI-TSTDV 234 (632)
Q Consensus 161 ~~~~~Ll~~l~~---~~ew~qi--~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i-~~~~~ 234 (632)
-...+|-+.+.+ ...|.|+ .++.+|..-....-+.....+.....++++.++++..+|.++--.+.... .++..
T Consensus 232 ~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~ 311 (372)
T PF12231_consen 232 LYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELT 311 (372)
T ss_pred HHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccc
Confidence 011112222222 1122222 22333322112233445566677777899999999988876532221111 12211
Q ss_pred HHHHHHhcccchhhhcc--Cch----hHHHHHHHHHHHHH
Q 006763 235 VRNLCKKMAPPLVTLLS--AEP----EIQYVALRNINLIV 268 (632)
Q Consensus 235 ~~~~~~~~~~~L~~Lls--~~~----niryvaL~~l~~i~ 268 (632)
.+...+-+..|+..-+. ..+ +++..++.++..+.
T Consensus 312 ~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 312 SPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred cHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 12222234556654442 233 66777777666555
No 181
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=78.03 E-value=19 Score=33.03 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=62.6
Q ss_pred hhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC---chhhH-----HHHHHHHHh
Q 006763 17 CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VDKIT-----EYLCDPLQR 88 (632)
Q Consensus 17 l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~---~~ei~-----~~l~~~v~~ 88 (632)
..+....+.---.-+-++-..+.+++-+--++..|+|-+.++||.++-+||..+-.+. .+.+- ..+...+.+
T Consensus 13 ATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~ 92 (140)
T PF00790_consen 13 ATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVK 92 (140)
T ss_dssp HT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH
T ss_pred HhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHH
Confidence 4444444444455567777878888889999999999999999999999998876542 22221 135556666
Q ss_pred hhCC--CChH--HHHHHHHHHHHhhh
Q 006763 89 CLKD--DDPY--VRKTAAICVAKLYD 110 (632)
Q Consensus 89 ~L~d--~~py--VRK~A~~al~kl~~ 110 (632)
++.+ ..+. ||+++...+.....
T Consensus 93 l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 93 LIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHccCCCCchhHHHHHHHHHHHHHHH
Confidence 6654 3333 89888876655443
No 182
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=77.88 E-value=24 Score=31.98 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHhhhhc-cccccccchHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 006763 95 PYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (632)
Q Consensus 95 pyVRK~A~~al~kl~~~~-p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~ 148 (632)
++||++.+.++..++..+ |+.-++ +++.+..++.. ++.-.-..+..|..+.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~--~l~~l~~~~~~-~~~~~~~~L~iL~~l~ 53 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPD--FLEDLLQLLQS-SPQHLELVLRILRILP 53 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTT--HHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCch--HHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 689999999999999765 887764 88888888776 4555545555554443
No 183
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=77.37 E-value=3 Score=40.37 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=53.8
Q ss_pred cCCCChHHHhHHHHHhcCCCch-hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccccc
Q 006763 55 SQDPNPLIRALAVRTMGCIRVD-KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (632)
Q Consensus 55 l~~~np~ir~lALr~L~~I~~~-ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~ 117 (632)
..|+|+..|-.|+-++...... .-.+.+...+..++.|.+.||||...-++..++..+|+.+.
T Consensus 114 ~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~ 177 (197)
T cd06561 114 AKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVI 177 (197)
T ss_pred HhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 4678999988888877775444 66788888999999999999999999999999999998775
No 184
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.88 E-value=52 Score=38.88 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=53.4
Q ss_pred hcCCCChHHHhHHHHHhcCCCc------hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccc
Q 006763 54 DSQDPNPLIRALAVRTMGCIRV------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV 116 (632)
Q Consensus 54 Dl~~~np~ir~lALr~L~~I~~------~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v 116 (632)
-+.|+-+.+||-||+.|..+.. ..+-+-+.......+.|.++||=-.|+-++..+...+|+.+
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i 803 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI 803 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh
Confidence 4557788999999999998743 35666788889999999999999999999999999888754
No 185
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=76.06 E-value=33 Score=31.26 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=62.0
Q ss_pred cchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCc---h----hhH-HHHHHHHHhhhCC--
Q 006763 23 LELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV---D----KIT-EYLCDPLQRCLKD-- 92 (632)
Q Consensus 23 ~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~---~----ei~-~~l~~~v~~~L~d-- 92 (632)
.+.---.-+.++-....+++...-++..|+|=++++||.+.-+||+.|-.+.. . ++. ..+...+.+.+.+
T Consensus 14 ~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~ 93 (133)
T smart00288 14 LEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKY 93 (133)
T ss_pred CCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCC
Confidence 33334445666777777788889999999999999999999999988865521 1 222 2355666777766
Q ss_pred CChHHHHHHHHHHHHhhhh
Q 006763 93 DDPYVRKTAAICVAKLYDI 111 (632)
Q Consensus 93 ~~pyVRK~A~~al~kl~~~ 111 (632)
..+.||+++...+......
T Consensus 94 ~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 94 PLPLVKKRILELIQEWADA 112 (133)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 3344888888877765543
No 186
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=75.43 E-value=7.8 Score=34.74 Aligned_cols=66 Identities=23% Similarity=0.289 Sum_probs=41.1
Q ss_pred HHHHhhh-CCCChHHHHHHHHHHHHhhhhcccc---ccccchHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 006763 84 DPLQRCL-KDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (632)
Q Consensus 84 ~~v~~~L-~d~~pyVRK~A~~al~kl~~~~p~~---v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~ 149 (632)
..+.++| .+.+|-+---|+.=+..+.+.+|+. +++.+..+.+..|+.+.|+.|...|+.++..+..
T Consensus 46 k~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 46 KKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3344555 3346666666666667777777753 3334555677778888888888888877776653
No 187
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=75.30 E-value=1.6e+02 Score=34.65 Aligned_cols=72 Identities=18% Similarity=0.125 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCC
Q 006763 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (632)
Q Consensus 79 ~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~ 152 (632)
...++..+..+..|+=+.||+.|+-.++-+..--|+.-. .++-.+..-|.|.+--+-+.|...|..+....|
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~--~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HP 373 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN--NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHP 373 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH--HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCC
Confidence 344555666677789999999999999999988888654 467777778889998999999999988876554
No 188
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.14 E-value=2e+02 Score=34.81 Aligned_cols=212 Identities=20% Similarity=0.252 Sum_probs=114.1
Q ss_pred HhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHH-hcCCChhH--HHHHHHHHHHHHhcCCCC--------c
Q 006763 87 QRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDL-ISDNNPMV--VANAVAALAEIEENSSRP--------I 155 (632)
Q Consensus 87 ~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~l-L~D~d~~V--v~~Al~aL~eI~~~~~~~--------~ 155 (632)
.++.-|++|-+||+|=.-+-.+.+ -| +|+..+-+. ..|..+.. .++|+..=+.|.+.-+.. .
T Consensus 10 ~~~T~d~d~~~R~~AE~~L~q~~K-~p------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I 82 (1010)
T KOG1991|consen 10 FRATIDSDAKERKAAEQQLNQLEK-QP------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGI 82 (1010)
T ss_pred HHHhcCCChHHHHHHHHHHHHhhc-CC------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCC
Confidence 344456679999988876665543 22 566655554 45666665 345555555666542211 1
Q ss_pred hhccHHHH-HHHHHHhhccChhhHHHHHHHHhcccc-CCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccC---
Q 006763 156 FEITSHTL-SKLLTALNECTEWGQVFILDALSRYKA-ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELIT--- 230 (632)
Q Consensus 156 ~~l~~~~~-~~Ll~~l~~~~ew~qi~lL~lL~~y~~-~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~--- 230 (632)
..-.++.+ ..++..+....+-..+.+-.++..... +-++.-..+++.+...|++.+.+.+|.+.-++..+...-+
T Consensus 83 ~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~ 162 (1010)
T KOG1991|consen 83 PEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKK 162 (1010)
T ss_pred ChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcc
Confidence 11111222 234455545566666666666643322 2233344677888889999999999999988876643111
Q ss_pred C--hHHHHHHHHhcccch----hhhccC----chhHHHHHHHHHHHHHhhC-------ccchhcccceeE----------
Q 006763 231 S--TDVVRNLCKKMAPPL----VTLLSA----EPEIQYVALRNINLIVQRR-------PTILAHEIKVFF---------- 283 (632)
Q Consensus 231 ~--~~~~~~~~~~~~~~L----~~Lls~----~~niryvaL~~l~~i~~~~-------p~~~~~~~~~f~---------- 283 (632)
+ ..-+..++....+.+ ..+++. ..++.+..|+.....++.. ++.|...+..|.
T Consensus 163 ~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E 242 (1010)
T KOG1991|consen 163 DEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVE 242 (1010)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChh
Confidence 1 111222222223322 234432 3478888888777766543 333333322111
Q ss_pred -------eccCCc-hhHHHHHHHHHHHhcC
Q 006763 284 -------CKYNDP-IYVKMEKLEIMIKLAS 305 (632)
Q Consensus 284 -------~l~~dd-~~Ik~~kL~lL~~L~n 305 (632)
.+.+.+ .-.|+=|+.+|.++..
T Consensus 243 ~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~ 272 (1010)
T KOG1991|consen 243 VLSLDPEDRSSWPWWKCKKWALHILNRLFE 272 (1010)
T ss_pred cccCChhhcccccchhhHHHHHHHHHHHHH
Confidence 111111 2367788999999864
No 189
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.54 E-value=23 Score=39.12 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=77.0
Q ss_pred HHHHHHHhh---cCCCChHHHhHHHHHhcCCCch------hhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHhhhhcc-c
Q 006763 46 LAVNTFVKD---SQDPNPLIRALAVRTMGCIRVD------KITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINA-E 114 (632)
Q Consensus 46 L~iNtl~kD---l~~~np~ir~lALr~L~~I~~~------ei~~~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~~~p-~ 114 (632)
+..|.++-+ ..||+..+|++|+|.|++...- .+...++..|.++|-| .+.-|--.|+.|+.++..+-. .
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 345555544 4688999999999999987542 5556677777777776 667788888888888776422 2
Q ss_pred cccc--cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCC
Q 006763 115 LVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (632)
Q Consensus 115 ~v~~--~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~ 152 (632)
.++. -++...++.++.|.++.+..+|+.++..+.+--+
T Consensus 335 ~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g 374 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG 374 (533)
T ss_pred chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC
Confidence 2221 0244678889999999999999999988776543
No 190
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=74.13 E-value=17 Score=34.37 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=28.9
Q ss_pred CCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCch
Q 006763 39 SQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD 76 (632)
Q Consensus 39 ~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ 76 (632)
..|++.-+..+.++++ + ++.+|--|+|+||-|+--
T Consensus 7 ~yP~LL~~L~~iLk~e-~--s~~iR~E~lr~lGilGAL 41 (160)
T PF11865_consen 7 DYPELLDILLNILKTE-Q--SQSIRREALRVLGILGAL 41 (160)
T ss_pred HhHHHHHHHHHHHHhC-C--CHHHHHHHHHHhhhcccc
Confidence 4588888888999988 4 489999999999998743
No 191
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=73.66 E-value=25 Score=32.62 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC---ch----hh-HHHHHHHHHhhhCC-CChHHHH
Q 006763 29 VYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD----KI-TEYLCDPLQRCLKD-DDPYVRK 99 (632)
Q Consensus 29 ~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~---~~----ei-~~~l~~~v~~~L~d-~~pyVRK 99 (632)
+-+-++-....+++-.--++.+|+|=++++||.+.-+||..|-.+. .. ++ ...+...+.+++.+ .++-||+
T Consensus 20 ~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~ 99 (144)
T cd03568 20 LILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKE 99 (144)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHH
Confidence 3344555666667778889999999999999999988988775441 11 11 12455667777777 7888888
Q ss_pred HHHHHHHHhhh
Q 006763 100 TAAICVAKLYD 110 (632)
Q Consensus 100 ~A~~al~kl~~ 110 (632)
++...+.....
T Consensus 100 kil~li~~W~~ 110 (144)
T cd03568 100 KLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHH
Confidence 88776665543
No 192
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=72.62 E-value=25 Score=41.69 Aligned_cols=246 Identities=17% Similarity=0.150 Sum_probs=129.3
Q ss_pred HHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhH-HHHHH----H---HHhhhCCCChHHHHHHHHH-----HHHhhh
Q 006763 44 AILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKIT-EYLCD----P---LQRCLKDDDPYVRKTAAIC-----VAKLYD 110 (632)
Q Consensus 44 ~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~-~~l~~----~---v~~~L~d~~pyVRK~A~~a-----l~kl~~ 110 (632)
.-+.++..+--....++.-.+.|+++.++...++-. ..+.. . +....... -.+-.|.-. =+.+.|
T Consensus 731 ln~~~~~~~~~~~~~vkl~s~~~~k~~~~~~~~~~~~~~l~~~~~vs~~~v~~y~gs~--dls~~al~~l~Wv~KaLl~R 808 (1030)
T KOG1967|consen 731 LNLLIPVSQMQNFAIVKLSSTNALKTTANLKLKEEAIRQLFSAKFVSEKKVENYCGSL--DLSEIALTVLAWVTKALLLR 808 (1030)
T ss_pred HHHHHHHHHHhcccccccccccchhhhhhhhcccHHHHHHHHHHhhhhHhHhhccCCc--chhhHHHHHHHHHHHHHHHc
Confidence 334455555555566777777788888877654311 11111 1 11111122 222223222 245677
Q ss_pred hccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCC------Cch-------hccHHHHHHHHHHhhccChhh
Q 006763 111 INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR------PIF-------EITSHTLSKLLTALNECTEWG 177 (632)
Q Consensus 111 ~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~------~~~-------~l~~~~~~~Ll~~l~~~~ew~ 177 (632)
.+|+..+ +...+.++|++ |.+...|..++.-|..+.+. ..+ .+...++..|.+.+....--.
T Consensus 809 ~~~~s~~---ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~ 883 (1030)
T KOG1967|consen 809 NHPESSE---IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQ 883 (1030)
T ss_pred CCcccch---HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccc
Confidence 7888776 67888888876 55556666666655544321 001 122233444555444222223
Q ss_pred HHHHHHHHhccccCCH-----HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccC
Q 006763 178 QVFILDALSRYKAADA-----REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA 252 (632)
Q Consensus 178 qi~lL~lL~~y~~~~~-----~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls~ 252 (632)
....+..|......-+ .+...++..+...|.-.+..|..++.++|-..+. ..+.+...-...+++.++.+-++
T Consensus 884 K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~--~~~tL~t~~~~Tlvp~lLsls~~ 961 (1030)
T KOG1967|consen 884 KHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT--ESETLQTEHLSTLVPYLLSLSSD 961 (1030)
T ss_pred hhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH--hccccchHHHhHHHHHHHhcCCC
Confidence 3445555544322111 2234566666677778888887888887765432 23334444334455555555432
Q ss_pred -ch---hHHHHHHHHHHHHHhhCccc----hhccc-c-eeEeccCCchhHHHHHHH
Q 006763 253 -EP---EIQYVALRNINLIVQRRPTI----LAHEI-K-VFFCKYNDPIYVKMEKLE 298 (632)
Q Consensus 253 -~~---niryvaL~~l~~i~~~~p~~----~~~~~-~-~f~~l~~dd~~Ik~~kL~ 298 (632)
++ -+|-.||+++..|..+-|.- +++.+ + ..-|+.+.-.-||++|.+
T Consensus 962 ~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 962 NDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred CCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 32 48999999999999876632 22222 1 233553332556776665
No 193
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=72.62 E-value=7.9 Score=41.87 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhcC---CCChHHHhHHHHHhcCCCc---hhhHHHHHHHHHhhhCCCChHHHHHHHHHH
Q 006763 43 LAILAVNTFVKDSQ---DPNPLIRALAVRTMGCIRV---DKITEYLCDPLQRCLKDDDPYVRKTAAICV 105 (632)
Q Consensus 43 l~lL~iNtl~kDl~---~~np~ir~lALr~L~~I~~---~ei~~~l~~~v~~~L~d~~pyVRK~A~~al 105 (632)
+.-...+.+.-||+ +..|.+|+-|++++...|+ ++....+++.+.++|.+++.-|+--||.|+
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 33344555566666 6789999999999987764 688888999999999999999999999886
No 194
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=72.23 E-value=83 Score=33.40 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhc-CCCChHHHhHHHHHhcCCC---chhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhh
Q 006763 43 LAILAVNTFVKDS-QDPNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYD 110 (632)
Q Consensus 43 l~lL~iNtl~kDl-~~~np~ir~lALr~L~~I~---~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~ 110 (632)
++--+++.|..=+ +..|+.....++.+++.=. ..++-+.++..+++++.|+.+-|||.-+.++..++.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 4444444443333 2367777777776665421 467788999999999999999999999999999886
No 195
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=72.19 E-value=4.7 Score=29.02 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.1
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHH
Q 006763 81 YLCDPLQRCLKDDDPYVRKTAAIC 104 (632)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~A~~a 104 (632)
.+...|.+.+.|++|-||+.|+-.
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 677788999999999999988753
No 196
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=70.67 E-value=93 Score=32.21 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=50.8
Q ss_pred chhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccc----cccchH----HHHHHHhc--------CCChhHHH
Q 006763 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV----EDRGFL----ESLKDLIS--------DNNPMVVA 138 (632)
Q Consensus 75 ~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v----~~~~~~----~~L~~lL~--------D~d~~Vv~ 138 (632)
..+..+-++|++..++.|.++.+|..++.|+..+....|... ...|+. +.+..++. +....++.
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~ 192 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQ 192 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHH
Confidence 346667899999999999999999999999999998665433 333333 33444444 44555555
Q ss_pred HHHHHHHHHH
Q 006763 139 NAVAALAEIE 148 (632)
Q Consensus 139 ~Al~aL~eI~ 148 (632)
.|..++..+.
T Consensus 193 ~ay~~L~~L~ 202 (282)
T PF10521_consen 193 AAYPALLSLL 202 (282)
T ss_pred HHHHHHHHHH
Confidence 5555555553
No 197
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=70.31 E-value=8.8 Score=26.99 Aligned_cols=28 Identities=36% Similarity=0.417 Sum_probs=23.0
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHhh
Q 006763 82 LCDPLQRCLKDDDPYVRKTAAICVAKLY 109 (632)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~A~~al~kl~ 109 (632)
.++.+.+++.+.++-||+.|+.|+..+-
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5677888888999999999998887653
No 198
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=70.12 E-value=2.2e+02 Score=33.42 Aligned_cols=69 Identities=23% Similarity=0.212 Sum_probs=49.8
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHhhhhccc---cccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcC
Q 006763 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (632)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~---~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~ 151 (632)
.|.+...|.+.+|.|.-.|+.-+-.+..-+-+ .+...+=+..|..+|...+..|..+|+.+|-.+.-.+
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~ 306 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGK 306 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhccc
Confidence 34566677799999988888777666554432 2222234678888999999999999999998876443
No 199
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.86 E-value=1.9e+02 Score=32.31 Aligned_cols=147 Identities=18% Similarity=0.132 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccccccc--chH-HHHHHHhcCCChhHHHHHHHHHHHHHhcCCC-C
Q 006763 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDR--GFL-ESLKDLISDNNPMVVANAVAALAEIEENSSR-P 154 (632)
Q Consensus 79 ~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~--~~~-~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~-~ 154 (632)
...++..+-.-..|++.-+|.-|+-|+...+...|+.+... ..+ ..+..|..+-|..|+..|+..|.-+...-.. .
T Consensus 256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~ 335 (533)
T KOG2032|consen 256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD 335 (533)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc
Confidence 34555566666788999999999999999999999877631 223 3445566677889999999888777654221 1
Q ss_pred chhccHHHHHHHHHHhhc-cCh--hhHHHHHHHHhccccCCHHHH--HHHHHHHHHh---hcCCCHHHHHHHHHHHHHh
Q 006763 155 IFEITSHTLSKLLTALNE-CTE--WGQVFILDALSRYKAADAREA--ENIVERVTPR---LQHANCAVVLSAVKMILQQ 225 (632)
Q Consensus 155 ~~~l~~~~~~~Ll~~l~~-~~e--w~qi~lL~lL~~y~~~~~~~~--~~il~~v~~~---L~~~n~aVv~eaik~i~~~ 225 (632)
.-....+..-++-+...+ ++. -.-..+...|..|+-..-++. +.+.....++ ++..|+-|.-+|=.....+
T Consensus 336 l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c 414 (533)
T KOG2032|consen 336 LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTC 414 (533)
T ss_pred hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhc
Confidence 111222333333333333 222 234567777888875543332 2244344444 4667776665554444443
No 200
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=68.82 E-value=2.4e+02 Score=33.17 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=69.8
Q ss_pred ChHHHhHHHHHhcCCCc---------hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHh
Q 006763 59 NPLIRALAVRTMGCIRV---------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI 129 (632)
Q Consensus 59 np~ir~lALr~L~~I~~---------~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL 129 (632)
|+.-.--|||.+++|.+ ..|-..+++.|...++++.-|.|..|+--+.++-.-.++...-.+..+...+++
T Consensus 429 narq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl 508 (970)
T COG5656 429 NARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCL 508 (970)
T ss_pred cHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 45555569999999866 133345678888899999999999999999988332333222123556677788
Q ss_pred cCCChhHHHHHHHHHHHHHhcCC-CCch-hccHHHHHHHHHH
Q 006763 130 SDNNPMVVANAVAALAEIEENSS-RPIF-EITSHTLSKLLTA 169 (632)
Q Consensus 130 ~D~d~~Vv~~Al~aL~eI~~~~~-~~~~-~l~~~~~~~Ll~~ 169 (632)
++.+--|+..|.-|+.-...++. .+.+ ...+....+||..
T Consensus 509 ~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsL 550 (970)
T COG5656 509 KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSL 550 (970)
T ss_pred hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHh
Confidence 88777777666666654433321 1111 2234445555544
No 201
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=68.78 E-value=52 Score=35.64 Aligned_cols=127 Identities=15% Similarity=0.149 Sum_probs=68.6
Q ss_pred ChHHHHHHHHHHH-HhhhhccccccccchHHHHHHHhc------CCChhHHHHHHHHHHHHHhcCCCC---------chh
Q 006763 94 DPYVRKTAAICVA-KLYDINAELVEDRGFLESLKDLIS------DNNPMVVANAVAALAEIEENSSRP---------IFE 157 (632)
Q Consensus 94 ~pyVRK~A~~al~-kl~~~~p~~v~~~~~~~~L~~lL~------D~d~~Vv~~Al~aL~eI~~~~~~~---------~~~ 157 (632)
+.+-||+||.-+. .+.+..++.+.. -+...+..+|. ..|+.-.-.|+.++..++...... ..+
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~v~~-i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQVTS-ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred ccCCcHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 3333444666555 455665555442 24456666665 345555667888888887554210 111
Q ss_pred ccHHHHHHHHHHhh---ccChhhHHHHHHHHhccccC-CHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 006763 158 ITSHTLSKLLTALN---ECTEWGQVFILDALSRYKAA-DAREAENIVERVTPRLQHANCAVVLSAVKM 221 (632)
Q Consensus 158 l~~~~~~~Ll~~l~---~~~ew~qi~lL~lL~~y~~~-~~~~~~~il~~v~~~L~~~n~aVv~eaik~ 221 (632)
+..=.-.+++-.|. ...||++...++++..|... +.+....++..+..+|++.+..|---|+.+
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 10000011111222 45799999999999887643 344566788888889998887765555544
No 202
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=68.38 E-value=88 Score=32.52 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=43.8
Q ss_pred chhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHH
Q 006763 289 PIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEA 368 (632)
Q Consensus 289 d~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~ 368 (632)
|..+|...+-...+-.+++.++.+.+ .|..+.+.+.+..++.++|..- ..+.+..+++++-.+...-.+++
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~---~~~~~~~~~~k~~~l~aLa~~~------d~~~~~~~l~~~l~~~~v~~~d~ 238 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWE---LYKNSTSPEEKRRLLSALACSP------DPELLKRLLDLLLSNDKVRSQDI 238 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHH---HHHTTSTHHHHHHHHHHHTT-S-------HHHHHHHHHHHHCTSTS-TTTH
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHH---HHhccCCHHHHHHHHHhhhccC------CHHHHHHHHHHHcCCcccccHHH
Confidence 45666665555444444333333322 2445556677777777665322 23444445555444322333444
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHhh
Q 006763 369 IIVIKDIFRRYPNTYESIIATLCESL 394 (632)
Q Consensus 369 i~~l~~ilr~~p~~~~~ii~~L~~~l 394 (632)
..++..+...+|..+..+...+.++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~n~ 264 (324)
T PF11838_consen 239 RYVLAGLASSNPVGRDLAWEFFKENW 264 (324)
T ss_dssp HHHHHHHH-CSTTCHHHHHHHHHHCH
T ss_pred HHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 44444444355555544444444433
No 203
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=68.20 E-value=1.4e+02 Score=30.04 Aligned_cols=131 Identities=17% Similarity=0.093 Sum_probs=82.8
Q ss_pred cCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCc--hhhHHHHHHHHHh-------h
Q 006763 19 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV--DKITEYLCDPLQR-------C 89 (632)
Q Consensus 19 ~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~--~ei~~~l~~~v~~-------~ 89 (632)
..++.+...-..-.+-..+..+.+..-+++.++..=.+.+....++.++|-++.+.. +...+.+.+.+.. .
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~ 90 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSS 90 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccc
Confidence 344444433333333333333326677777777776666666678888998888743 2222333333333 1
Q ss_pred hC--CCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHh-cCCChhHHHHHHHHHHHHHhcC
Q 006763 90 LK--DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI-SDNNPMVVANAVAALAEIEENS 151 (632)
Q Consensus 90 L~--d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL-~D~d~~Vv~~Al~aL~eI~~~~ 151 (632)
.. +....+.-..+.++.-+...+|+.-. .++..+..+| .+.++.+.+.|+-++..+++..
T Consensus 91 ~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~--~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 91 FSSKDEFWECLISIAASIRDICCSRPDHGV--DLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhChhhHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 22 23334444446677888888999444 5889999999 7888999999999999998654
No 204
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=68.19 E-value=18 Score=34.02 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=37.1
Q ss_pred CCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHH
Q 006763 92 DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (632)
Q Consensus 92 d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI 147 (632)
...+-||-.|.+++.|+++..++...+ .+.+.+..++.+.+..-...++.++..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~l 70 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTAL 70 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHH
Confidence 466779999999999998766665553 4556667777654444455555555555
No 205
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=66.97 E-value=55 Score=31.69 Aligned_cols=88 Identities=20% Similarity=0.246 Sum_probs=57.8
Q ss_pred HHHHHHHhhhCC-CChHHHHHHHHHHHHhhhh-ccccccc--cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCch
Q 006763 81 YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI-NAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (632)
Q Consensus 81 ~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~~-~p~~v~~--~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~ 156 (632)
.+.|....+|.. .+|| |=-|..++..+.+. .++.+-. ++++.-|+..|+.+|+.|+.+++.+|..+...++.--
T Consensus 38 ~~Lpif~dGL~Et~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG- 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG- 115 (183)
T ss_pred hHHHHHHhhhhccCccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh-
Confidence 566677777776 5555 56777888888777 5554331 2466677889999999999999999988854432111
Q ss_pred hccHHHHHHHHHHh
Q 006763 157 EITSHTLSKLLTAL 170 (632)
Q Consensus 157 ~l~~~~~~~Ll~~l 170 (632)
+-..+.+++||-.+
T Consensus 116 ~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 116 EALVPYYRQLLPVL 129 (183)
T ss_pred HHHHHHHHHHHHHH
Confidence 12233456665543
No 206
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=66.17 E-value=20 Score=31.23 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcCCCCChHHH------HHHHHHhhhcCCCChHHHhhHHHHHHHhcCCHHHHHhhhcc
Q 006763 439 QLQLLTATVKLFLKKPTEGPQQM------IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLA 502 (632)
Q Consensus 439 q~~iLta~~Kl~~~~p~e~~~~~------v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~~~~~~~~ivl~ 502 (632)
|..++..++-+..+.+. .++. +.-+|+.|..|..||-+|++|.+-.|-|-.+..+.+++|..
T Consensus 3 K~~lvrlianl~~~~~~--~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKE--VQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHH--HHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 44555666666666654 4444 34578888889999999999999999776666666666654
No 207
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=65.68 E-value=11 Score=36.04 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=45.4
Q ss_pred CChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCC
Q 006763 93 DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (632)
Q Consensus 93 ~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~ 152 (632)
.---+||.|.-|++.+....++.+.-..|.+.+..-|.| ++.+..-+...+..++...|
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p 97 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAP 97 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-H
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCH
Confidence 344699999999999999888887766788999999999 88888777777777765543
No 208
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=65.38 E-value=9.4 Score=26.84 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=27.7
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 006763 118 DRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (632)
Q Consensus 118 ~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~ 148 (632)
+.+.++.|.++|.+.|+.|+.+|+.+|..|+
T Consensus 10 ~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 10 EAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999998875
No 209
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=65.31 E-value=1.7e+02 Score=30.05 Aligned_cols=202 Identities=15% Similarity=0.179 Sum_probs=108.4
Q ss_pred hccCchhHHHHHHHHHHHHHhhCcc-chhc-ccc---eeEeccCCchhHHHHHHHHHHHhcCcc-----cHHHHHHHHHH
Q 006763 249 LLSAEPEIQYVALRNINLIVQRRPT-ILAH-EIK---VFFCKYNDPIYVKMEKLEIMIKLASDR-----NIDQVLLEFKE 318 (632)
Q Consensus 249 Lls~~~niryvaL~~l~~i~~~~p~-~~~~-~~~---~f~~l~~dd~~Ik~~kL~lL~~L~n~~-----Ni~~Iv~EL~~ 318 (632)
|.+.++.+|--|+..|..++.+-|. .+.. ++. .|||..=+|...-..+++-+..|.+-+ .+..+++.+.+
T Consensus 8 Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~ 87 (262)
T PF14500_consen 8 LTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQ 87 (262)
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHH
Confidence 3367899999999999999988774 3433 333 477743344333333366666655433 34556666554
Q ss_pred hhh--hcCHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHhhhch-hhHHHHHHHHHHHHhhCcccHHHHHHHHH
Q 006763 319 YAT--EVDVDFVRKAVRAIGRCAIKLERA----AERCISVLLELIKIKVN-YVVQEAIIVIKDIFRRYPNTYESIIATLC 391 (632)
Q Consensus 319 yl~--~~d~~~~~~~i~aIg~la~k~~~~----~~~~v~~Ll~ll~~~~~-~v~~e~i~~l~~ilr~~p~~~~~ii~~L~ 391 (632)
... .--..-|....+-+..+..++... ...++..+++.++.+.+ ...--+-..++.++++++- ...++.++
T Consensus 88 ~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--~~~~e~lF 165 (262)
T PF14500_consen 88 NVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--SEFAEDLF 165 (262)
T ss_pred hCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--chhHHHHH
Confidence 322 122333444445555555555432 23455556665554433 1111112233444455542 33444444
Q ss_pred Hhhc---------------cCChhhHHHHHHHHHhcccCccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCC
Q 006763 392 ESLD---------------TLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT 455 (632)
Q Consensus 392 ~~l~---------------~i~~p~a~~~~iWiLGEy~~~i~~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~ 455 (632)
+.+. .|+..+.+.++--++.--.. -++..+..+++++....+.||.-.|.++.-.+-+++.
T Consensus 166 d~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~---fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 166 DVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL---FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred HHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh---hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 4331 12222444444444431111 1566777778888888888998888888877777764
No 210
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=65.14 E-value=3.1e+02 Score=33.01 Aligned_cols=220 Identities=15% Similarity=0.141 Sum_probs=125.7
Q ss_pred CcHHHHHHHHHHhhcCC-CChHHHhHHHHHhcCCC-----chhhHHHHHHH-HHhhhCCCChHHHHHHHHHHHHhhhhcc
Q 006763 41 PDLAILAVNTFVKDSQD-PNPLIRALAVRTMGCIR-----VDKITEYLCDP-LQRCLKDDDPYVRKTAAICVAKLYDINA 113 (632)
Q Consensus 41 ~el~lL~iNtl~kDl~~-~np~ir~lALr~L~~I~-----~~ei~~~l~~~-v~~~L~d~~pyVRK~A~~al~kl~~~~p 113 (632)
.+...-.++.+...+.+ .-|..-+.|+-+++... .+.+.+.+... +.-+..|..|+||-+|+.+..-... +
T Consensus 444 dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~ 521 (1005)
T KOG2274|consen 444 DDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--V 521 (1005)
T ss_pred HHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--c
Confidence 44555667788888864 46777778888887653 34555554444 4444468999999999987765553 3
Q ss_pred cccc--ccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCch---hccHHHHHHHHHHhhccChh----hHHHHHHH
Q 006763 114 ELVE--DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF---EITSHTLSKLLTALNECTEW----GQVFILDA 184 (632)
Q Consensus 114 ~~v~--~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~---~l~~~~~~~Ll~~l~~~~ew----~qi~lL~l 184 (632)
..+. .+.+++.|..+..+....|.....-+|+.+++-+|.... ..+.+....+.... .-+|. .|..+.++
T Consensus 522 ~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~-s~DP~V~~~~qd~f~el 600 (1005)
T KOG2274|consen 522 KVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKY-SEDPQVASLAQDLFEEL 600 (1005)
T ss_pred eeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHh-cCCchHHHHHHHHHHHH
Confidence 2222 236778888888888888888888888888887764221 12222222222211 11222 23222233
Q ss_pred H---hccccCCHHHHHHHHHHHHHhhcCCC-------HHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhh--hccC
Q 006763 185 L---SRYKAADAREAENIVERVTPRLQHAN-------CAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVT--LLSA 252 (632)
Q Consensus 185 L---~~y~~~~~~~~~~il~~v~~~L~~~n-------~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~--Lls~ 252 (632)
+ ..|+|- .+..+..+...++..+ .++....+.+++...+ +| +-+.+..-+-+++.. +-+.
T Consensus 601 ~q~~~~~g~m----~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp---~p-L~~~l~~~~FpaVak~tlHsd 672 (1005)
T KOG2274|consen 601 LQIAANYGPM----QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP---SP-LPNLLICYAFPAVAKITLHSD 672 (1005)
T ss_pred HHHHHhhcch----HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC---CC-ccHHHHHHHhHHhHhheeecC
Confidence 3 234332 2345555555665543 2566666666666433 22 333344445555544 3366
Q ss_pred chhHHHHHHHHHHHHHhhC
Q 006763 253 EPEIQYVALRNINLIVQRR 271 (632)
Q Consensus 253 ~~niryvaL~~l~~i~~~~ 271 (632)
+.+.--.+=.++..++...
T Consensus 673 D~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 673 DHETLQNATECLRALISVT 691 (1005)
T ss_pred ChHHHHhHHHHHHHHHhcC
Confidence 7776666667776666554
No 211
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=63.88 E-value=2.8e+02 Score=36.40 Aligned_cols=134 Identities=16% Similarity=0.276 Sum_probs=79.9
Q ss_pred cCCCHHHHHHHHHHHHHhhh-ccCChHHH-HHHHHhcccchhhhcc--CchhHHHHHHHHHHHHHhhCccch-hccccee
Q 006763 208 QHANCAVVLSAVKMILQQME-LITSTDVV-RNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQRRPTIL-AHEIKVF 282 (632)
Q Consensus 208 ~~~n~aVv~eaik~i~~~~~-~i~~~~~~-~~~~~~~~~~L~~Lls--~~~niryvaL~~l~~i~~~~p~~~-~~~~~~f 282 (632)
.|.|..|.+-|+..+-++.- .++.+++. -.+-+.+.+|+..++. .+.++|-.+|+++..|++.+.+-+ +.+-.+|
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF 1226 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 1226 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHH
Confidence 46677888888876644321 11222211 0122345677777663 577999999999999988765444 3333344
Q ss_pred Ee----ccCCchhHHHHHHHHHHHhcCc----------ccHHHHHHHHHHhhhhc-CHHHHHHHHHHHHHHHHh
Q 006763 283 FC----KYNDPIYVKMEKLEIMIKLASD----------RNIDQVLLEFKEYATEV-DVDFVRKAVRAIGRCAIK 341 (632)
Q Consensus 283 ~~----l~~dd~~Ik~~kL~lL~~L~n~----------~Ni~~Iv~EL~~yl~~~-d~~~~~~~i~aIg~la~k 341 (632)
.+ ..++...+-+.+.+.+-.++++ +++...++-|.+|.... +.++.-.++..+..|+.+
T Consensus 1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1227 MVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 32 2244466777788877766543 57778888888888632 344444555544444333
No 212
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=63.20 E-value=97 Score=32.49 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=74.5
Q ss_pred ChHHHhHHHHHhcCC-CchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHH
Q 006763 59 NPLIRALAVRTMGCI-RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVV 137 (632)
Q Consensus 59 np~ir~lALr~L~~I-~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv 137 (632)
.+....+-++.|..+ ..+++++++...+-.++.+.. -|........ ..+++. -|.+.++ ++...|..+.
T Consensus 53 ~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~--~~~~~~~~~~---~~~~~~----~~~~fl~-ll~~~D~~i~ 122 (312)
T PF03224_consen 53 GDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP--SRVELFLELA---KQDDSD----PYSPFLK-LLDRNDSFIQ 122 (312)
T ss_dssp ---------HHHHHH---HHHHHHHHHHHHHHHH-SS--SSHHHHHHHH---H-TTH------HHHHHH-H-S-SSHHHH
T ss_pred hhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH--HHHHHHHHhc---ccccch----hHHHHHH-HhcCCCHHHH
Confidence 345556667777777 788888888888888777744 2233332222 222221 2555555 7777788888
Q ss_pred HHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhc----cChhhHHHHHHHHhccccCCHHHH-----HHHHHHHHHhh-
Q 006763 138 ANAVAALAEIEENSSRPIFEITSHTLSKLLTALNE----CTEWGQVFILDALSRYKAADAREA-----ENIVERVTPRL- 207 (632)
Q Consensus 138 ~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~----~~ew~qi~lL~lL~~y~~~~~~~~-----~~il~~v~~~L- 207 (632)
..|...+..+....+..........+..+++.+.. .+.=.|-..+++|+..... ++.. ...++.+.+.+
T Consensus 123 ~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~ 201 (312)
T PF03224_consen 123 LKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILR 201 (312)
T ss_dssp HHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHH
Confidence 88888888887665432222112345555555443 1111223344555544322 1111 23445555555
Q ss_pred ------cCCCHHHHHHHHHHHHHh
Q 006763 208 ------QHANCAVVLSAVKMILQQ 225 (632)
Q Consensus 208 ------~~~n~aVv~eaik~i~~~ 225 (632)
...+.=+.|+++-++..+
T Consensus 202 ~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 202 KQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp ---------HHHHHHHHHHHHHHH
T ss_pred hhcccCCCCchhHHHHHHHHHHHH
Confidence 123346788888877654
No 213
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=61.89 E-value=1.8e+02 Score=34.90 Aligned_cols=175 Identities=16% Similarity=0.095 Sum_probs=116.0
Q ss_pred HHHHHHhhcCCCChHHHhHHHHHhcCCCc-------hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccc-
Q 006763 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRV-------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED- 118 (632)
Q Consensus 47 ~iNtl~kDl~~~np~ir~lALr~L~~I~~-------~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~- 118 (632)
++-.|+..+.|++..-|.-||+-|-.+.. +.....+...++..+.|.|-.|-..|+.++--+....+....+
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 44568888999999999999988765432 2234456667777888999999999999999998877665442
Q ss_pred -cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHH----HHHHhccccCC-
Q 006763 119 -RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFI----LDALSRYKAAD- 192 (632)
Q Consensus 119 -~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~l----L~lL~~y~~~~- 192 (632)
....+.+-+.+.|.-+.++-+++.++..+....+- -.....++..++.-+|=....+ -+.+..+.+..
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 12335566777888899988888888888763321 1134445555655554332222 34444555322
Q ss_pred -HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q 006763 193 -AREAENIVERVTPRLQHANCAVVLSAVKMILQQME 227 (632)
Q Consensus 193 -~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~ 227 (632)
......+...+....+..+..|...|..++..+..
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 23345566666666777888888888777765543
No 214
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=61.49 E-value=2.2e+02 Score=30.11 Aligned_cols=109 Identities=16% Similarity=0.178 Sum_probs=69.3
Q ss_pred HHhHHHHHhcCCCchhhHHHHHHHHHhhhC-CCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHH
Q 006763 62 IRALAVRTMGCIRVDKITEYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANA 140 (632)
Q Consensus 62 ir~lALr~L~~I~~~ei~~~l~~~v~~~L~-d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~A 140 (632)
-|.+..+.|+.+....+.+.+...+...+. +.|.-....++-++.+-+...-..++ ..+++.+.+-+.|+.+.|...-
T Consensus 3 ~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~-~~~~~~~~kGl~~kk~~vR~~w 81 (339)
T PF12074_consen 3 QRVLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELP-KKVVDAFKKGLKDKKPPVRRAW 81 (339)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCC-HHHHHHHHHHhcCCCCcHHHHH
Confidence 466667777777654455555555555554 48888888888888876655422222 2588999999999999888877
Q ss_pred HHHHHHHHhcCC-CCchhccHHHHHHHHHHhh
Q 006763 141 VAALAEIEENSS-RPIFEITSHTLSKLLTALN 171 (632)
Q Consensus 141 l~aL~eI~~~~~-~~~~~l~~~~~~~Ll~~l~ 171 (632)
+..+.++....+ .....+..+.+..|++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 82 LLCLGEALWESPNSDSLKFAEPFLPKLLQSLK 113 (339)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHHH
Confidence 777777765111 1122333444555555553
No 215
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=61.39 E-value=27 Score=33.77 Aligned_cols=119 Identities=19% Similarity=0.279 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhcCCC---Cc--HHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCc------------------------
Q 006763 25 LKKLVYLYLINYAKSQ---PD--LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV------------------------ 75 (632)
Q Consensus 25 ~Krl~YLyl~~~~~~~---~e--l~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~------------------------ 75 (632)
.||..|-|+..+.... +. -.-| ...+ +.|+++-+|..|+.+++.+-.
T Consensus 18 ~~r~l~~yW~~llP~~~~~~~~~~~sL-lt~i---l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~ 93 (182)
T PF13251_consen 18 DKRSLFGYWPALLPDSVLQGRPATPSL-LTCI---LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSS 93 (182)
T ss_pred CCceeHhhHHHHCCCCCCcCCCCCcch-hHHH---HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHH
Confidence 4888899999998876 11 1111 1123 357899999999999987511
Q ss_pred --hhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHhhhh------ccccccccchHHHHHHHhcCCChhHHHHHHHHHHH
Q 006763 76 --DKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI------NAELVEDRGFLESLKDLISDNNPMVVANAVAALAE 146 (632)
Q Consensus 76 --~ei~~~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~~------~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~e 146 (632)
-.|+-.+...+...+.+ .++-+-.-.+-|+.-+... .++++. .++..++.++.++|+.|..+++.++.-
T Consensus 94 tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~--~~v~~v~~~l~~~d~~v~v~~l~~~~~ 171 (182)
T PF13251_consen 94 TLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLT--EVVTQVRPLLRHRDPNVRVAALSCLGA 171 (182)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHH--HHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 12333344445555554 3444444444444444333 334454 367778888888999998888888776
Q ss_pred HHh
Q 006763 147 IEE 149 (632)
Q Consensus 147 I~~ 149 (632)
+..
T Consensus 172 l~s 174 (182)
T PF13251_consen 172 LLS 174 (182)
T ss_pred HHc
Confidence 654
No 216
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=60.73 E-value=2.1e+02 Score=29.48 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHHhh--Cccchhcc---cceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHH
Q 006763 254 PEIQYVALRNINLIVQR--RPTILAHE---IKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFV 328 (632)
Q Consensus 254 ~niryvaL~~l~~i~~~--~p~~~~~~---~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~ 328 (632)
.++|+.+|+.+....-. .++-+..- ++.+.--+.+.+.+...+++++.+..+.+.+.+++..+..-+.-.+..|
T Consensus 80 ~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~- 158 (278)
T PF08631_consen 80 SELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF- 158 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH-
Confidence 37888888877655432 22222221 2222233455677888999999996666666666666664443333333
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHH-HHHhhhch
Q 006763 329 RKAVRAIGRCAIKLERAAERCISVLL-ELIKIKVN 362 (632)
Q Consensus 329 ~~~i~aIg~la~k~~~~~~~~v~~Ll-~ll~~~~~ 362 (632)
..++..|..++.+-++.+-.|++.++ .-+....+
T Consensus 159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 45667777777776666666665544 33333333
No 217
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=60.36 E-value=3.6e+02 Score=33.04 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhcccCccCC----HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC--ChHHHHHHHHHhhhcCCC
Q 006763 401 EAKASMIWIIGEYAERIDN----ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE--GPQQMIQVVLNNATVETD 474 (632)
Q Consensus 401 ~a~~~~iWiLGEy~~~i~~----~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e--~~~~~v~~ll~~~~~~s~ 474 (632)
+.+-.++-.|||.+..--- .-..|+.++..|..-+.++-+.+|..+.+++.+.|+- .++.++..+...+ ...
T Consensus 520 etk~~~VrfIsEL~KF~lv~~~~if~cLk~ll~dF~~hnIEm~c~lLE~~GrfLlr~pEt~lrM~~~Le~i~rkK--~a~ 597 (1128)
T KOG2051|consen 520 ETKLKIVRFISELCKFQLVPKFEIFSCLKMLLNDFTHHNIEMACVLLESCGRFLLRSPETKLRMRVFLEQIKRKK--RAS 597 (1128)
T ss_pred hhhhhhhhhHHhhhhhCccChHHHHHHHHHHHHhcccccHHHHHHHHHhcchhhhcChhHHHHHHHHHHHHHHHH--HHh
Confidence 3456678889998765322 3567888999999999999999999999999999962 1334444444322 233
Q ss_pred ChHHHhhHH
Q 006763 475 NPDLRDRAY 483 (632)
Q Consensus 475 ~~dvrdRA~ 483 (632)
..|=|+-+.
T Consensus 598 ~lDsr~~~~ 606 (1128)
T KOG2051|consen 598 ALDSRQATL 606 (1128)
T ss_pred hhchHHHHH
Confidence 444555444
No 218
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=58.49 E-value=3.6e+02 Score=31.57 Aligned_cols=248 Identities=16% Similarity=0.196 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCch
Q 006763 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (632)
Q Consensus 77 ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~ 156 (632)
++-+.+...+++.+ +.+++||- ++.-+..+...+--.+.--+|++.+.. +|++=.+.=+..|..+.+.-+...
T Consensus 236 ~~p~el~~~l~k~l-~~~~~~rp-~~~~l~~~~ff~D~~~~aLrfLD~l~~----kdn~qKs~Flk~Ls~~ip~fp~rv- 308 (700)
T KOG2137|consen 236 NLPSELRESLKKLL-NGDSAVRP-TLDLLLSIPFFSDPGLKALRFLDDLPQ----KDNSQKSSFLKGLSKLIPTFPARV- 308 (700)
T ss_pred cCcHHHHHHHHHHh-cCCcccCc-chhhhhcccccCCchhhhhhhcccccc----cCcHHHHHHHHHHHHhhccCCHHH-
Confidence 44445555566654 45778888 555555443332222221122222222 444444444444555544333211
Q ss_pred hccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCH-HH-HHHHHHHHHHhhcCCC----HHHHHHHHHHHHHhhhccC
Q 006763 157 EITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA-RE-AENIVERVTPRLQHAN----CAVVLSAVKMILQQMELIT 230 (632)
Q Consensus 157 ~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~-~~-~~~il~~v~~~L~~~n----~aVv~eaik~i~~~~~~i~ 230 (632)
+..+.+..|+..+ .++-.+-.+|.++..+....+ .+ ...++..+.+.++-.. ...+++=..++..- ..
T Consensus 309 -~~~kiLP~L~~el--~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~K---t~ 382 (700)
T KOG2137|consen 309 -LFQKILPTLVAEL--VNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEK---TP 382 (700)
T ss_pred -HHHhhhhHHHHHh--ccccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhh---CC
Confidence 1223344444443 122222233333333322111 11 1234444444444221 24445555555542 22
Q ss_pred ChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccch-----hcccceeEeccCCchhHHHHHHHHHHHhc
Q 006763 231 STDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTIL-----AHEIKVFFCKYNDPIYVKMEKLEIMIKLA 304 (632)
Q Consensus 231 ~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~-----~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~ 304 (632)
.++..+ ++.+-|.+-+ ..+..+|-.+|+.+......-+--+ -+-++.+ |......++|.-.|..+-.++
T Consensus 383 ~e~~~~----~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l-~~~tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 383 PEEVKE----KILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNL-AFKTTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred hHHHHH----HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcc-hhcccchHHHHHHHHHHHHHH
Confidence 333333 3444333333 3567788888887776665433211 1223444 566777888888888777777
Q ss_pred CcccHHHHHHHHHHhhh---hcCHHHHHHHHHHHHHHHHhh
Q 006763 305 SDRNIDQVLLEFKEYAT---EVDVDFVRKAVRAIGRCAIKL 342 (632)
Q Consensus 305 n~~Ni~~Iv~EL~~yl~---~~d~~~~~~~i~aIg~la~k~ 342 (632)
..--.-.+++++...+. ..|++++-..++....++.+.
T Consensus 458 q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~ 498 (700)
T KOG2137|consen 458 QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALII 498 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhc
Confidence 43333456676665554 357777766666666655543
No 219
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=57.83 E-value=1.8e+02 Score=37.40 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=84.4
Q ss_pred hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCc
Q 006763 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (632)
Q Consensus 76 ~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~ 155 (632)
.+..+.+..-...++.++++-||.-+...-..+|....+.... ..+..|...+.+.+..-+.+|+.+|.++....+...
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qq-eVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l 508 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQ-EVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSEL 508 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHH
Confidence 3555566666778888999999999999888888766443332 456666666666777777899999999997664322
Q ss_pred hhccHHHHHHHHHHhhccChhhHHHHHHHHhccc---cCCH-HHHHHHHHHHHHhhcCCCH----HHHHHHHHHHHHhh
Q 006763 156 FEITSHTLSKLLTALNECTEWGQVFILDALSRYK---AADA-REAENIVERVTPRLQHANC----AVVLSAVKMILQQM 226 (632)
Q Consensus 156 ~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~---~~~~-~~~~~il~~v~~~L~~~n~----aVv~eaik~i~~~~ 226 (632)
......+..+|..+...++----++.++|...+ .... .-..++--.+-..|.+++. -=+..|+..+-++.
T Consensus 509 -~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~~la 586 (1426)
T PF14631_consen 509 -QPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIKHLA 586 (1426)
T ss_dssp -HHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHH
Confidence 111223445555555444433335566665443 1111 1112332333456777765 33455555555543
No 220
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.79 E-value=13 Score=38.76 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=27.0
Q ss_pred CChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHH
Q 006763 58 PNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAK 107 (632)
Q Consensus 58 ~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~k 107 (632)
.|-+||.-|.++|-.+-..---..+.+.|..++.|.+|.+|.+|++|..+
T Consensus 182 dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 182 DNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred cchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhchhhhhhhhccccc
Confidence 34555555555555444444444455555555666666666666665544
No 221
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=57.56 E-value=1.2e+02 Score=29.77 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=44.8
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCC
Q 006763 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (632)
Q Consensus 84 ~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~ 153 (632)
+.+.+-..|.+.++||.|+.+..+.-+. .+ .+ .+...+..++.|++--|.-+.-=+|-++.+.++.
T Consensus 118 ~~l~~W~~s~~~W~rR~ai~~~l~~~~~-~~-~~--~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~ 183 (208)
T cd07064 118 PVMDEWSTDENFWLRRTAILHQLKYKEK-TD-TD--LLFEIILANLGSKEFFIRKAIGWALREYSKTNPD 183 (208)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHc-cC-HH--HHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHH
Confidence 4466677889999999999987664332 22 11 2456677778887777766656677788776653
No 222
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=57.32 E-value=3.3e+02 Score=32.16 Aligned_cols=125 Identities=17% Similarity=0.097 Sum_probs=90.2
Q ss_pred CCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCC--CchhhHHHHHHHHHhhhCCCChHH
Q 006763 20 TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI--RVDKITEYLCDPLQRCLKDDDPYV 97 (632)
Q Consensus 20 s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I--~~~ei~~~l~~~v~~~L~d~~pyV 97 (632)
+++..-|+|..-|+..+++.-=. -.|.+|.-=..++=+.++.-||+++..+ .-||=-..|+..+.+-|.|+.--+
T Consensus 281 ~~~~~~k~Ll~WyfE~~LK~ly~---rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKi 357 (988)
T KOG2038|consen 281 NKRLRDKILLMWYFEHELKILYF---RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKI 357 (988)
T ss_pred ccccccceehHHHHHHHHHHHHH---HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhh
Confidence 66777777777777777665322 2333443334455688999999999876 346767788999999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhH--HHHHHHHHHHHHh
Q 006763 98 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV--VANAVAALAEIEE 149 (632)
Q Consensus 98 RK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~V--v~~Al~aL~eI~~ 149 (632)
--+|..-+..+...+|..-- -.++.+.+++--+|.+- ..-|+..|+++.-
T Consensus 358 askAsylL~~L~~~HPnMK~--Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 358 ASKASYLLEGLLAKHPNMKI--VVIDEIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred hhhHHHHHHHHHhhCCccee--ehHHHHHHHHcccCccccceeehhhhhhhhHh
Confidence 99999999999999997643 25678888776555443 3456777776643
No 223
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=57.22 E-value=78 Score=29.20 Aligned_cols=55 Identities=13% Similarity=0.022 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCch
Q 006763 99 KTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (632)
Q Consensus 99 K~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~ 156 (632)
..+++-+.-+....|+... .-+..|.+-|+.+||.|+.-|+.+|-.+.+ +|+..|
T Consensus 19 w~~ileicD~In~~~~~~k--~a~rai~krl~~~n~~v~l~AL~LLe~~vk-NCG~~f 73 (139)
T cd03567 19 WEAIQAFCEQINKEPEGPQ--LAVRLLAHKIQSPQEKEALQALTVLEACMK-NCGERF 73 (139)
T ss_pred HHHHHHHHHHHHcCCccHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HcCHHH
Confidence 4667777777776666544 356778888899999999999988865554 455433
No 224
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=56.40 E-value=5.5e+02 Score=33.11 Aligned_cols=96 Identities=23% Similarity=0.276 Sum_probs=54.2
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHH-HHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHH
Q 006763 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT-LSKLLTALNECTEWGQVFILDALSRYKAADAREAEN 198 (632)
Q Consensus 120 ~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~-~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~ 198 (632)
.+.+.+.+++.-....+.--.+..|=||...+. |.. +..|...+. .++-..+-+|+.|..+.- +++...+
T Consensus 192 ~l~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds~-------h~~v~~~L~~ll~-~~~~L~~~iLd~Ls~L~L-s~~~l~~ 262 (1426)
T PF14631_consen 192 ELTDKLFEVLSIAPVELQKEIISSLPEILDDSQ-------HDEVVEELLELLQ-ENPELTVPILDALSNLNL-SPELLEE 262 (1426)
T ss_dssp HHHHHHHHHHHHS-TTTHHHHHHTHHHHS-GGG-------HHHHHHHHHHHHH-H-STTHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcchh-------HHHHHHHHHHHHh-cCCchhhhHHHHHhcCCC-CHHHHHH
Confidence 456666666665555666667777777765432 223 333433333 344457888999988764 3445556
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHH
Q 006763 199 IVERVTPRLQHANCAVVLSAVKMILQ 224 (632)
Q Consensus 199 il~~v~~~L~~~n~aVv~eaik~i~~ 224 (632)
+-+.+...|.+.....+=..+|.+++
T Consensus 263 vr~~vl~~L~s~~~e~LP~lirFLL~ 288 (1426)
T PF14631_consen 263 VREKVLEKLSSVDLEDLPVLIRFLLQ 288 (1426)
T ss_dssp HHHHHHHSTTSS-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChhhhHHHHHHHHH
Confidence 66666667766655555555666665
No 225
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.09 E-value=4.5e+02 Score=31.97 Aligned_cols=114 Identities=20% Similarity=0.264 Sum_probs=75.4
Q ss_pred CChHHHhHHHHHhcCCCc---------hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhh---ccccccccchHHHH
Q 006763 58 PNPLIRALAVRTMGCIRV---------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI---NAELVEDRGFLESL 125 (632)
Q Consensus 58 ~np~ir~lALr~L~~I~~---------~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~---~p~~v~~~~~~~~L 125 (632)
.|+.-.--|||.+|++.. .+|--.+.+.|...++++.-|.|-+||-.+.++... +|.... +..+..
T Consensus 430 ~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t 507 (1010)
T KOG1991|consen 430 KNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELT 507 (1010)
T ss_pred cChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHH
Confidence 455556668888888752 233346678889999999999999999999998743 344433 345556
Q ss_pred HHHhc-CCChhHHHHHHHHHHHHHhcCCC--C-chhccHHHHHHHHHHhhcc
Q 006763 126 KDLIS-DNNPMVVANAVAALAEIEENSSR--P-IFEITSHTLSKLLTALNEC 173 (632)
Q Consensus 126 ~~lL~-D~d~~Vv~~Al~aL~eI~~~~~~--~-~~~l~~~~~~~Ll~~l~~~ 173 (632)
.++|. |.+--|..-|.-||.-...+... . .-..+++...+|++..++.
T Consensus 508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV 559 (1010)
T ss_pred HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc
Confidence 66666 88888877777777665544321 1 2234455566666655544
No 226
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=56.06 E-value=1.8e+02 Score=27.48 Aligned_cols=137 Identities=18% Similarity=0.207 Sum_probs=69.0
Q ss_pred HHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhC
Q 006763 300 MIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY 379 (632)
Q Consensus 300 L~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~ 379 (632)
+-++ +++|++.++.+|.+...+ +++....+++.|-..+...+....-|.. ++..+......+..+++..+..-+++.
T Consensus 8 lnkL-s~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~ya~-L~~~l~~~~~~f~~~ll~~~~~~f~~~ 84 (200)
T smart00543 8 INKL-SPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEPNFIPAYAR-LCALLNAKNPDFGSLLLERLQEEFEKG 84 (200)
T ss_pred HhhC-CHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 478999999999976644 4577788888887777766544333332 233232222223333333222222211
Q ss_pred cccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccC-ccCC---HHHHHHHHhhhCCC-------CCHHHHHHHHHHHHH
Q 006763 380 PNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAE-RIDN---ADELLESFLESFPE-------EPAQVQLQLLTATVK 448 (632)
Q Consensus 380 p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~-~i~~---~~~~l~~l~~~f~~-------e~~~vq~~iLta~~K 448 (632)
.+..+. ..-......+..+||.-. .+-. ..+++..+++.... ...++=+.+|..+.+
T Consensus 85 -----------~e~~~~-~~~~~~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~ 152 (200)
T smart00543 85 -----------LESEEE-SDKQRRLGLVRFLGELYNFQVLTSKIILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGK 152 (200)
T ss_pred -----------HHHHHH-HhhhhHHhHHHHHHHHHHcccCcHHHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhH
Confidence 000000 111234567777887332 2222 23555566655433 233444456666666
Q ss_pred Hhh
Q 006763 449 LFL 451 (632)
Q Consensus 449 l~~ 451 (632)
.+.
T Consensus 153 ~l~ 155 (200)
T smart00543 153 DLE 155 (200)
T ss_pred HHc
Confidence 665
No 227
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=55.95 E-value=76 Score=34.19 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=69.1
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC--------chhhHHHHH
Q 006763 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--------VDKITEYLC 83 (632)
Q Consensus 12 ~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~--------~~ei~~~l~ 83 (632)
-.+.|...-++-..+-=+-|-++-...++||..--++-.|.|-+++.||.|.-+||..+..+. -+--...+.
T Consensus 11 ~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~ 90 (462)
T KOG2199|consen 11 QDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFT 90 (462)
T ss_pred HHHHHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHH
Confidence 345555555555555556667777788899999999999999999999999999999887652 122234666
Q ss_pred HHHHhhhC-CCChHHHHHHHHHHH
Q 006763 84 DPLQRCLK-DDDPYVRKTAAICVA 106 (632)
Q Consensus 84 ~~v~~~L~-d~~pyVRK~A~~al~ 106 (632)
..+++++. ..++-|+++-...+-
T Consensus 91 ~el~al~~~~~h~kV~~k~~~lv~ 114 (462)
T KOG2199|consen 91 TELRALIESKAHPKVCEKMRDLVK 114 (462)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHH
Confidence 77888888 588888877655443
No 228
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=55.67 E-value=25 Score=34.06 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHh
Q 006763 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI 129 (632)
Q Consensus 77 ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL 129 (632)
.+++.++.+++++|+..++-|.+++..++-++...++-.-+ .+.+.++++|
T Consensus 76 PvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~--aLvPyyrqLL 126 (183)
T PF10274_consen 76 PVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE--ALVPYYRQLL 126 (183)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHH
Confidence 56678899999999999999999999999998665543332 3666666654
No 229
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=54.92 E-value=3.1e+02 Score=29.80 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=67.5
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhC
Q 006763 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLK 91 (632)
Q Consensus 12 ~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~ 91 (632)
-.|++... .+...||++--++-+|++.-|+++--++|.-..=+.|.+-.||--|+|-|...+.-+....+.+.+.++|+
T Consensus 28 ~~il~~~k-~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 28 EGILKAVK-GTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHhh-cchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 34445443 45678999999999999999999999999877777888889999999999999888888888888999888
No 230
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.85 E-value=1.1e+02 Score=32.08 Aligned_cols=57 Identities=30% Similarity=0.327 Sum_probs=25.9
Q ss_pred HHhhcCCCChHHHhHHHHHhcCCCch------hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhh
Q 006763 51 FVKDSQDPNPLIRALAVRTMGCIRVD------KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLY 109 (632)
Q Consensus 51 l~kDl~~~np~ir~lALr~L~~I~~~------ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~ 109 (632)
+.+-+.++||.+|..|++.+.++... .--+..++.|.+++.+..+ -.-|+.++.++.
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnls 70 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLS 70 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHH
Confidence 33444455555555555555444332 1112344445555555444 334444444444
No 231
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=54.80 E-value=70 Score=29.59 Aligned_cols=50 Identities=30% Similarity=0.473 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCC
Q 006763 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN 132 (632)
Q Consensus 78 i~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~ 132 (632)
..+.+...+.++|.+.++-|.|.|.-|+... ++|.+.+ +.+.|..+++|.
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~~--k~~~l~p---Y~d~L~~Lldd~ 63 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLTW--KDPYLTP---YKDNLENLLDDK 63 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CcHHHHh---HHHHHHHHcCcc
Confidence 3456666788889999999999999988763 3444443 667788888764
No 232
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=54.67 E-value=39 Score=29.47 Aligned_cols=60 Identities=25% Similarity=0.354 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHH-----HHHHHHH--HhhhchhhHHHHHHHHHHHHhhCcccHHHH
Q 006763 327 FVRKAVRAIGRCAIKLERAAERC-----ISVLLEL--IKIKVNYVVQEAIIVIKDIFRRYPNTYESI 386 (632)
Q Consensus 327 ~~~~~i~aIg~la~k~~~~~~~~-----v~~Ll~l--l~~~~~~v~~e~i~~l~~ilr~~p~~~~~i 386 (632)
|++.+|+.||.++-+-+..-+.. +..+++. +....+|+.+-++..+++++..+++-++.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57788888888887655433332 3344443 234567899999999999999998877543
No 233
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=52.56 E-value=21 Score=22.84 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=19.5
Q ss_pred HHhHHHHHhcCCCchhhHHHHHHHHH
Q 006763 62 IRALAVRTMGCIRVDKITEYLCDPLQ 87 (632)
Q Consensus 62 ir~lALr~L~~I~~~ei~~~l~~~v~ 87 (632)
||..|.+.|+.++.++-++.|...++
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 68889999999999887777665543
No 234
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=51.25 E-value=3.2e+02 Score=28.77 Aligned_cols=107 Identities=21% Similarity=0.227 Sum_probs=59.6
Q ss_pred ccHHHHHHHHHHhhccCC-hhhHHHHHHHHHhcccCc----cCCHH---HHHHHHhh-hCC-----------CCCHHHHH
Q 006763 381 NTYESIIATLCESLDTLD-EPEAKASMIWIIGEYAER----IDNAD---ELLESFLE-SFP-----------EEPAQVQL 440 (632)
Q Consensus 381 ~~~~~ii~~L~~~l~~i~-~p~a~~~~iWiLGEy~~~----i~~~~---~~l~~l~~-~f~-----------~e~~~vq~ 440 (632)
+.++.+.+.|...+.+-. .+.++.+++..+|=-+.. .+... +.++.+.. .+. ..++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 445556666666554433 345556666555543221 12223 34442211 111 11356788
Q ss_pred HHHHHHHHHhhcCCCCChHH----HHHHHHHhhhcCCCChHHHhhHHHHHHHh
Q 006763 441 QLLTATVKLFLKKPTEGPQQ----MIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (632)
Q Consensus 441 ~iLta~~Kl~~~~p~e~~~~----~v~~ll~~~~~~s~~~dvrdRA~~y~~LL 489 (632)
..|.+-.=|+...|...... .+.++... -++.|.+||-=|.+-..||
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~l--L~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLEEALPALSEL--LDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHH
Confidence 88888888877777522333 33333332 2578999999999999988
No 235
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=51.22 E-value=2.7e+02 Score=27.92 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=85.0
Q ss_pred CCCChHHHhHHHHHhcCCCch--hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHH-HHHH-----
Q 006763 56 QDPNPLIRALAVRTMGCIRVD--KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLE-SLKD----- 127 (632)
Q Consensus 56 ~~~np~ir~lALr~L~~I~~~--ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~-~L~~----- 127 (632)
+.+||-.....|++|..+... ...+.+...+..+....+.-.+-.+..-+.++...++...+ ++. .+..
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~---~L~~~L~~~~~r~ 87 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFP---FLQPLLLLLILRI 87 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHH---HHHHHHHHHHhhc
Confidence 344555666666666555432 45556666666666666665555666667777777765543 222 2222
Q ss_pred --Hhc--CCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHh-hccChhhHHHHHHHHhccccCCHHHHHHHHHH
Q 006763 128 --LIS--DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL-NECTEWGQVFILDALSRYKAADAREAENIVER 202 (632)
Q Consensus 128 --lL~--D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l-~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~ 202 (632)
... +....+..+...++.+++...|....+ .+..+-..+ ...++=.+..-|+.+..+++.+--+....-+.
T Consensus 88 ~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~----ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~v 163 (234)
T PF12530_consen 88 PSSFSSKDEFWECLISIAASIRDICCSRPDHGVD----LLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKV 163 (234)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhChhhHHH----HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 011 222334444445666777666542122 233333334 57778888888888888875443334444455
Q ss_pred HHHhhcCC-CHHHHHHHHHH
Q 006763 203 VTPRLQHA-NCAVVLSAVKM 221 (632)
Q Consensus 203 v~~~L~~~-n~aVv~eaik~ 221 (632)
+.+.+... .+.|.-+-.+.
T Consensus 164 l~~~l~~~~rp~v~~~l~~l 183 (234)
T PF12530_consen 164 LQKKLSLDYRPLVLKSLCSL 183 (234)
T ss_pred HHHhcCCccchHHHHHHHHH
Confidence 55556433 34444433333
No 236
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=49.94 E-value=1e+02 Score=35.63 Aligned_cols=117 Identities=19% Similarity=0.250 Sum_probs=81.2
Q ss_pred ChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHH
Q 006763 59 NPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (632)
Q Consensus 59 np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~ 138 (632)
.+-+-|.||-+|+-=...+|+ ...+-..+.-.+|.+||..=+|+.-++-.+|+.- .++.|.+...|.|+.|..
T Consensus 621 ~~avLgiAliAMgeeig~eM~---lR~f~h~l~yge~~iRravPLal~llsvSNPq~~----vlDtLsk~shd~D~eva~ 693 (878)
T KOG2005|consen 621 ELAVLGIALIAMGEEIGSEMV---LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVN----VLDTLSKFSHDGDLEVAM 693 (878)
T ss_pred cchhhhhhhhhhhhhhhhHHH---HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcch----HHHHHHHhccCcchHHHH
Confidence 366778888888864444443 4455666677999999999999999998999863 779999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhccHHHHHHHHHHh-----hccChhhHHHHHHHHhccc
Q 006763 139 NAVAALAEIEENSSRPIFEITSHTLSKLLTAL-----NECTEWGQVFILDALSRYK 189 (632)
Q Consensus 139 ~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l-----~~~~ew~qi~lL~lL~~y~ 189 (632)
||+.++.-|.... +...+-++|+++ ++.+-.--+.|.+-|..++
T Consensus 694 naIfamGLiGAGT-------nNARla~mLrqlaSYyyKd~~~Lf~vriAQGL~hlG 742 (878)
T KOG2005|consen 694 NAIFAMGLIGAGT-------NNARLAQMLRQLASYYYKDSKALFVVRIAQGLVHLG 742 (878)
T ss_pred HHHHHhccccCCc-------chHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Confidence 9999987764321 112334444443 2344444455555555444
No 237
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=49.42 E-value=2.2e+02 Score=26.37 Aligned_cols=85 Identities=19% Similarity=0.209 Sum_probs=48.3
Q ss_pred hccCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhh-cCHHH
Q 006763 249 LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATE-VDVDF 327 (632)
Q Consensus 249 Lls~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~-~d~~~ 327 (632)
+.+++|++++.+|..+..+++.....|..++ ++ ...++||...+.. .+..+
T Consensus 46 l~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev------------------------as----k~Fl~eL~kl~~~~~~~~V 97 (144)
T cd03568 46 LNHKDPNVQLRALTLLDACAENCGKRFHQEV------------------------AS----RDFTQELKKLINDRVHPTV 97 (144)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH------------------------hh----HHHHHHHHHHhcccCCHHH
Confidence 4467889999999999888887665553322 11 1233333333333 56677
Q ss_pred HHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhhc
Q 006763 328 VRKAVRAIGRCAIKLERAAE-RCISVLLELIKIKV 361 (632)
Q Consensus 328 ~~~~i~aIg~la~k~~~~~~-~~v~~Ll~ll~~~~ 361 (632)
+.++..-|..-+..|....+ .++..+.+.|...|
T Consensus 98 k~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~~G 132 (144)
T cd03568 98 KEKLREVVKQWADEFKNDPSLSLMSDLYKKLKNEG 132 (144)
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHcC
Confidence 77777777777766653322 23334444444433
No 238
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=49.16 E-value=1.3e+02 Score=25.60 Aligned_cols=63 Identities=16% Similarity=0.336 Sum_probs=42.4
Q ss_pred HHHH-HhhhhcCHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhh
Q 006763 314 LEFK-EYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 378 (632)
Q Consensus 314 ~EL~-~yl~~~d~~~~~~~i~aIg~la~k~~----~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~ 378 (632)
++|. +|+...+ +-+.+++..+-..+..+. ..+..|+.++-+++..+.+|+..| +.++..|+.+
T Consensus 5 D~la~~f~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~a~~Y~kvm~Ki~~kg~~yv~~E-~~RL~~iL~~ 72 (93)
T cd00238 5 DELAKEFVDASD-EERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVEKE-LARLERLLEK 72 (93)
T ss_pred HHHHHHHhccch-hHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHcchhHHHHH-HHHHHHHHhc
Confidence 3444 4555443 345666666666665543 456788999988888888898888 5677777776
No 239
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=48.58 E-value=2.5e+02 Score=32.83 Aligned_cols=205 Identities=11% Similarity=0.098 Sum_probs=106.4
Q ss_pred cCchhHHHHHHHHHHHHHhhCccch--hcccceeEe-ccCCchhHHHHHHHHHHHhcCccc--HHHHHHHHHHhhh-hcC
Q 006763 251 SAEPEIQYVALRNINLIVQRRPTIL--AHEIKVFFC-KYNDPIYVKMEKLEIMIKLASDRN--IDQVLLEFKEYAT-EVD 324 (632)
Q Consensus 251 s~~~niryvaL~~l~~i~~~~p~~~--~~~~~~f~~-l~~dd~~Ik~~kL~lL~~L~n~~N--i~~Iv~EL~~yl~-~~d 324 (632)
.++|.-|+..++.|..+....|.-+ ++-+-.+-- +.++...=...=+=+++.-+-..| ...++..|..-.+ ...
T Consensus 284 ~kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~ 363 (700)
T KOG2137|consen 284 QKDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDP 363 (700)
T ss_pred ccCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCc
Confidence 3688888888888888887776422 111111100 111111000011111222233333 4455555554333 222
Q ss_pred HHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhh--CcccHHHHHHHHHHhhccCChh
Q 006763 325 VDFVRKAVRAIGRCAIKLER--AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR--YPNTYESIIATLCESLDTLDEP 400 (632)
Q Consensus 325 ~~~~~~~i~aIg~la~k~~~--~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~--~p~~~~~ii~~L~~~l~~i~~p 400 (632)
.+..--+++.+--|.+|.++ ..+.|++.|..-++...-.+.++++..+-.+... ++-.++.++.++....-..+..
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~ 443 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL 443 (700)
T ss_pred ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch
Confidence 33333444556666666542 3445566665555555545555555543333222 3344556666665432222334
Q ss_pred hHHHHHHHHHhcccCccCC--HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCC
Q 006763 401 EAKASMIWIIGEYAERIDN--ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT 455 (632)
Q Consensus 401 ~a~~~~iWiLGEy~~~i~~--~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~ 455 (632)
..+..++-++|+..+.++. ..+.+..+.......++.+.+.++...-+++.+.+.
T Consensus 444 ~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 444 YVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 4567777777777765543 345555566666667788888888888888777665
No 240
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=48.06 E-value=1.4e+02 Score=27.52 Aligned_cols=79 Identities=11% Similarity=0.070 Sum_probs=52.6
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC---c----hhhH-HHHHHHHHhhhCC------CChH
Q 006763 31 LYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKIT-EYLCDPLQRCLKD------DDPY 96 (632)
Q Consensus 31 Lyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~---~----~ei~-~~l~~~v~~~L~d------~~py 96 (632)
+-+.-....+++.+.-++-.++|=++++||.+.-+||..|-.+. . .+++ ..+...+.+++.. .++-
T Consensus 23 leicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~ 102 (139)
T cd03567 23 QAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEK 102 (139)
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHH
Confidence 33444455667777889999999999999999888887664431 1 2333 3444566666642 6778
Q ss_pred HHHHHHHHHHHhh
Q 006763 97 VRKTAAICVAKLY 109 (632)
Q Consensus 97 VRK~A~~al~kl~ 109 (632)
||++....+....
T Consensus 103 Vk~kil~li~~W~ 115 (139)
T cd03567 103 VKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHH
Confidence 8888776555433
No 241
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=46.99 E-value=1.2e+02 Score=31.43 Aligned_cols=38 Identities=21% Similarity=0.485 Sum_probs=30.3
Q ss_pred HHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCc
Q 006763 235 VRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP 272 (632)
Q Consensus 235 ~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p 272 (632)
+.+..-.+.++++.++. .++++|.-|++.+..++.+-|
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 44444567888888885 589999999999999998655
No 242
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=46.76 E-value=2.9e+02 Score=31.69 Aligned_cols=46 Identities=11% Similarity=0.338 Sum_probs=20.3
Q ss_pred HHHHHhhhCCC--CCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhh
Q 006763 423 LLESFLESFPE--EPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNA 469 (632)
Q Consensus 423 ~l~~l~~~f~~--e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~ 469 (632)
+...+.++|+. .+..++...+..+.++.--.|.= ..++++-+++..
T Consensus 163 L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L-~~~Il~lIi~rL 210 (563)
T PF05327_consen 163 LIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPEL-RSDILSLIIERL 210 (563)
T ss_dssp HHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGG-HHHHHHHHHHHH
T ss_pred HHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHH-HHHHHHHHHHHH
Confidence 33444455543 34555555666666665555531 233444444443
No 243
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=46.54 E-value=4.1e+02 Score=28.68 Aligned_cols=160 Identities=11% Similarity=0.135 Sum_probs=81.2
Q ss_pred HHHHHHHHhhcCC--CHHHHHHHHHHHHHhhhccCChHHH-HHHHHhcccchhhhcc--CchhHHHHHHHHHHHHHhhCc
Q 006763 198 NIVERVTPRLQHA--NCAVVLSAVKMILQQMELITSTDVV-RNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQRRP 272 (632)
Q Consensus 198 ~il~~v~~~L~~~--n~aVv~eaik~i~~~~~~i~~~~~~-~~~~~~~~~~L~~Lls--~~~niryvaL~~l~~i~~~~p 272 (632)
.+++.....+.+. +-+++-..+.++-.. .++ +..+ .....++...+..+-+ +..++-+-.|..+..++.++|
T Consensus 90 ~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q--~f~-~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p 166 (372)
T PF12231_consen 90 FIIDHSIESLQNPNSPKSICTHYLWCLSDQ--KFS-PKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFP 166 (372)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCC-CcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHH
Confidence 4556555566443 336666666665431 111 1111 1112223333333332 356788889999999999999
Q ss_pred cchhcccc----e-eEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHh-h--hh
Q 006763 273 TILAHEIK----V-FFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK-L--ER 344 (632)
Q Consensus 273 ~~~~~~~~----~-f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k-~--~~ 344 (632)
..+..|.. . |-.+-+-...+|.+++.++..+.-. + ..+..+.+.. ..+..+ . .+
T Consensus 167 ~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~------l--------~~~~~~s~~~----~~~~~~~~~~~~ 228 (372)
T PF12231_consen 167 QQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKC------L--------GPNKELSKSV----LEDLQRSLENGK 228 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH------h--------ChhHHHHHHH----HHHhcccccccc
Confidence 98876643 2 2223333455666666665543211 0 0111111111 111110 0 02
Q ss_pred hHHHHHHHHHHHHhhhch-hhHHHHHHHHHHHHhh
Q 006763 345 AAERCISVLLELIKIKVN-YVVQEAIIVIKDIFRR 378 (632)
Q Consensus 345 ~~~~~v~~Ll~ll~~~~~-~v~~e~i~~l~~ilr~ 378 (632)
..+.+.+.|.+++..+++ -..-.+|.++..+++.
T Consensus 229 ~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~ 263 (372)
T PF12231_consen 229 LIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGS 263 (372)
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCC
Confidence 345667777777777444 3456788888877764
No 244
>PF14961 BROMI: Broad-minded protein
Probab=46.47 E-value=1.7e+02 Score=36.16 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=54.3
Q ss_pred HHHHhhcCCCCh-HHHhHHHHHhcCCCch-----hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccc
Q 006763 49 NTFVKDSQDPNP-LIRALAVRTMGCIRVD-----KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV 116 (632)
Q Consensus 49 Ntl~kDl~~~np-~ir~lALr~L~~I~~~-----ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v 116 (632)
|.+..-+.-.+| .+|--|+..||++... |-...+...+..+|.|+++.++-++.--..|+|...|-.+
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 344444544555 6999999999998654 5566899999999999999999999998999998877554
No 245
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=45.72 E-value=73 Score=35.83 Aligned_cols=143 Identities=14% Similarity=0.243 Sum_probs=87.6
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHhh-hhcc---ccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCC-Cc
Q 006763 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLY-DINA---ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PI 155 (632)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~A~~al~kl~-~~~p---~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~-~~ 155 (632)
.+...+.++|.+++-.|.-.+..++..+. ...| -.++ .++++.|.+++..+|....++.+-.+..+.-+... ..
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~-~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLE-KSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHH-hhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 45566788888888878777777766543 2332 2233 47889999999988888888888888776543221 22
Q ss_pred hhccHHH-HHHHHHHhhccChhhHHHHHHHHhccccCCHH--HH----------HHHHHHHHHhhcCCCHHHHHHHHHHH
Q 006763 156 FEITSHT-LSKLLTALNECTEWGQVFILDALSRYKAADAR--EA----------ENIVERVTPRLQHANCAVVLSAVKMI 222 (632)
Q Consensus 156 ~~l~~~~-~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~--~~----------~~il~~v~~~L~~~n~aVv~eaik~i 222 (632)
+++..++ +.+++...+++.=--|...+++|+.+.-.+.. +. .-+.+++...+...|+.-..+.+-.+
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yil 589 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYIL 589 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHH
Confidence 3333322 45566655554433488999999988753222 11 12445555566666766666554444
Q ss_pred HH
Q 006763 223 LQ 224 (632)
Q Consensus 223 ~~ 224 (632)
++
T Consensus 590 v~ 591 (743)
T COG5369 590 VR 591 (743)
T ss_pred HH
Confidence 33
No 246
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=45.67 E-value=82 Score=26.38 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhhhC-CCChHHHHHHHHHHHHhhhhccccccccchHH---HHHHHhcCCChhHHHHHHHHH
Q 006763 78 ITEYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLE---SLKDLISDNNPMVVANAVAAL 144 (632)
Q Consensus 78 i~~~l~~~v~~~L~-d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~---~L~~lL~D~d~~Vv~~Al~aL 144 (632)
.-..+..|....+. .++.-||...+.|+.++.....+.+.. ||.. .+.....|.+..++..|...+
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~S-GW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKS-GWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHh-ccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 33455666666644 478999999999999999988887764 7854 445556677777777776554
No 247
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=45.49 E-value=35 Score=23.23 Aligned_cols=27 Identities=33% Similarity=0.282 Sum_probs=21.3
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHh
Q 006763 82 LCDPLQRCLKDDDPYVRKTAAICVAKL 108 (632)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~A~~al~kl 108 (632)
.++.+.+++.+.++-+++.|+.++..+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456677777788899999998888765
No 248
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=45.36 E-value=1.7e+02 Score=27.02 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=41.8
Q ss_pred HHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCC
Q 006763 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (632)
Q Consensus 86 v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~ 153 (632)
|.++-.+...-.-...++-+.-+.+.++.... .-+..|++-|..+||.|+.-|+.+|..+.+ +|+
T Consensus 9 I~kATs~~l~~~dw~~ileicD~In~~~~~~k--~a~ral~krl~~~n~~vql~AL~LLe~~vk-NCG 73 (142)
T cd03569 9 IEKATSELLGEPDLASILEICDMIRSKDVQPK--YAMRALKKRLLSKNPNVQLYALLLLESCVK-NCG 73 (142)
T ss_pred HHHHcCcccCccCHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHcCCChHHHHHHHHHHHHHHH-HCC
Confidence 44444433333345666666666666555433 366788888899999999999887755554 455
No 249
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.24 E-value=1.9e+02 Score=31.44 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=52.6
Q ss_pred HHHhhhCCCChHHHHHHHHHHHHhhhhccccccc--cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCC
Q 006763 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (632)
Q Consensus 85 ~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~--~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~ 152 (632)
.+..-+.|.+.-|||.|..++-.++..+|+.+.. ..+++.+..++.|.+..|.....-++-.+....+
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~ 131 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPAC 131 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcc
Confidence 3555678999999999999999999888877652 2345667778899999999888888777554443
No 250
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=44.63 E-value=2.9e+02 Score=32.47 Aligned_cols=102 Identities=18% Similarity=0.127 Sum_probs=66.5
Q ss_pred HHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccccc---ccchH
Q 006763 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE---DRGFL 122 (632)
Q Consensus 46 L~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~---~~~~~ 122 (632)
+.+|.+..=.-+++.. .|+..|++++.|- -..++..+...+..+ --|..|+.-+..+.+..|..+. +..++
T Consensus 39 ~l~~~l~~y~~~t~s~---~~~~il~~~~~P~-~K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf 112 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNSQ---RALEILVGVQEPH-DKHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLF 112 (668)
T ss_pred HHHHHHHHHHhhcCcH---HHHHHHHhcCCcc-HHHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhH
Confidence 4567766544444322 3777888888771 123344455566543 4578888888889888775432 22444
Q ss_pred HHHH-HHhcCCChhHHHHHHHHHHHHHhcCCC
Q 006763 123 ESLK-DLISDNNPMVVANAVAALAEIEENSSR 153 (632)
Q Consensus 123 ~~L~-~lL~D~d~~Vv~~Al~aL~eI~~~~~~ 153 (632)
+.|- -|..|.++.|+.+|+.+|.-+.++-|.
T Consensus 113 ~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 113 KSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 4444 455699999999999999998877653
No 251
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=43.96 E-value=1e+02 Score=28.00 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCC
Q 006763 99 KTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (632)
Q Consensus 99 K~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~ 153 (632)
..+++.+.-+.+..++... .-+..|++-|..+||.|+..|+.+|-.+.++ |+
T Consensus 18 ~~~il~icd~I~~~~~~~k--~a~raL~krl~~~n~~vql~AL~lLd~~vkN-cg 69 (133)
T cd03561 18 WALNLELCDLINLKPNGPK--EAARAIRKKIKYGNPHVQLLALTLLELLVKN-CG 69 (133)
T ss_pred HHHHHHHHHHHhCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-CC
Confidence 4666667777766655544 3668888889999999999999888666655 44
No 252
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=43.87 E-value=5.9e+02 Score=29.78 Aligned_cols=162 Identities=14% Similarity=0.131 Sum_probs=110.2
Q ss_pred cchhHHHHHh---hcCCCcchHHHHHHHHHHhcCCCCcH--HHHHHHHHHhhcCCCC--hHHHhHHHHHhcCCCchhhHH
Q 006763 8 SSLFTDVVNC---MQTENLELKKLVYLYLINYAKSQPDL--AILAVNTFVKDSQDPN--PLIRALAVRTMGCIRVDKITE 80 (632)
Q Consensus 8 s~lf~~vi~l---~~s~d~~~Krl~YLyl~~~~~~~~el--~lL~iNtl~kDl~~~n--p~ir~lALr~L~~I~~~ei~~ 80 (632)
+.-|.++... +..++.+.|+=-+-.+....+.-||. +..+.+-+..++.-.+ ..+....+..---+..++...
T Consensus 250 ~n~fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~ 329 (690)
T KOG1243|consen 250 RNDFVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQV 329 (690)
T ss_pred cchHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhcccccccc
Confidence 4445555554 35677788887777777766666662 3334455555554332 344445555555566777888
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHhhh-hccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhcc
Q 006763 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYD-INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEIT 159 (632)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~A~~al~kl~~-~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~ 159 (632)
.+.|.|.+++...+--||-.=..-+-+... +.++.+.+ .+.+.+...+.|+|+.++..++..+..+...-...
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d-~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~----- 403 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILND-QIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR----- 403 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcc-hhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-----
Confidence 899999999999999999887777777665 34555554 67889999999999999999988887775332110
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHhccccC
Q 006763 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAA 191 (632)
Q Consensus 160 ~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~ 191 (632)
=++..+|+.|+++.++
T Consensus 404 ----------------~Ln~Ellr~~ar~q~d 419 (690)
T KOG1243|consen 404 ----------------NLNGELLRYLARLQPD 419 (690)
T ss_pred ----------------hhcHHHHHHHHhhCcc
Confidence 1345677888888773
No 253
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=43.84 E-value=1.2e+02 Score=25.94 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=41.3
Q ss_pred HhhhhcCHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHh
Q 006763 318 EYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (632)
Q Consensus 318 ~yl~~~d~~~~~~~i~aIg~la~k~~----~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr 377 (632)
+|+...+ +=+.+++...-..+...+ ..+.+|+.++-+++..+.+|+..| +..+..++.
T Consensus 12 ~f~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E-~~RL~~lL~ 73 (95)
T PF07749_consen 12 EFVAASD-DEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKE-IARLERLLE 73 (95)
T ss_dssp HHHHS-C-HHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHH-HHHHHHHHH
T ss_pred HHHcCcH-HHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHH-HHHHHHHHh
Confidence 4555555 455566666666666554 457899999999999999999988 566777776
No 254
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.23 E-value=96 Score=37.68 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=64.8
Q ss_pred HHHHhhcC-CCcchHHHHHHHHHHhcCCCCcHHHHH-----HHHHHhhcCCCChHHHhHHHHHhcCCCch----------
Q 006763 13 DVVNCMQT-ENLELKKLVYLYLINYAKSQPDLAILA-----VNTFVKDSQDPNPLIRALAVRTMGCIRVD---------- 76 (632)
Q Consensus 13 ~vi~l~~s-~d~~~Krl~YLyl~~~~~~~~el~lL~-----iNtl~kDl~~~np~ir~lALr~L~~I~~~---------- 76 (632)
.++..+.+ +..-+|..+-+.+..++...++--.+. .--+-.-|.|+-|.||+.|+-+|+.+...
T Consensus 603 iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~ 682 (1387)
T KOG1517|consen 603 ICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTL 682 (1387)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhh
Confidence 34444555 356788888888888887776643333 33456677888889999888877765321
Q ss_pred ------------hhHHHHHH----HHHhhhCCCChHHHHHHHHHHHHhhhh
Q 006763 77 ------------KITEYLCD----PLQRCLKDDDPYVRKTAAICVAKLYDI 111 (632)
Q Consensus 77 ------------ei~~~l~~----~v~~~L~d~~pyVRK~A~~al~kl~~~ 111 (632)
--+|.++. .+...++|.+|.||+..+.++.++..-
T Consensus 683 ~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 683 VVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred hhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 01233333 666777888888888887777776543
No 255
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=43.21 E-value=1.7e+02 Score=25.59 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=44.3
Q ss_pred HHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCC
Q 006763 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (632)
Q Consensus 86 v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~ 152 (632)
|.++-.+..+-.-...+.-+..+...+++... .....|.+-|.++|+.|+.-|+.+|..+.++.+
T Consensus 5 v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~--~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g 69 (115)
T cd00197 5 VEKATSNENMGPDWPLIMEICDLINETNVGPK--EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG 69 (115)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHCCCccHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc
Confidence 34444443333334555556666555555554 377888888999999999999999988887654
No 256
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=43.18 E-value=1.1e+02 Score=32.22 Aligned_cols=182 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcCccc-----HHHHHHHHHH-----hhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 006763 291 YVKMEKLEIMIKLASDRN-----IDQVLLEFKE-----YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 360 (632)
Q Consensus 291 ~Ik~~kL~lL~~L~n~~N-----i~~Iv~EL~~-----yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~ 360 (632)
.||+.-|.++-..+.... ...+++.|.+ |-+..+..--.+.+..++.+..|........+..+++
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~----- 116 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE----- 116 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-----
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-----
Q ss_pred chhhHHHHHHHHHHHHhhCcccH-------HHHHHHHHHhhccCChhhHH---HHHHHHHh-cccCccCCHHHHHHHHhh
Q 006763 361 VNYVVQEAIIVIKDIFRRYPNTY-------ESIIATLCESLDTLDEPEAK---ASMIWIIG-EYAERIDNADELLESFLE 429 (632)
Q Consensus 361 ~~~v~~e~i~~l~~ilr~~p~~~-------~~ii~~L~~~l~~i~~p~a~---~~~iWiLG-Ey~~~i~~~~~~l~~l~~ 429 (632)
.+.+.++..+.+=+..||+.+ +.++....+.+-.+....-+ .++.|.++ ...+..+.+-+++..+++
T Consensus 117 --~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 117 --AVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp --HHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Q ss_pred hCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhc
Q 006763 430 SFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (632)
Q Consensus 430 ~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~ 490 (632)
++...+++...+..... ..+.++.++...+..+........+....+|+.
T Consensus 195 ~~~~~~~~~~~~F~~~y-----------~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 195 NVSKTNPEFANQFYQQY-----------YLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHH-SHHHHHHHHHHH-----------HHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH-----------HHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
No 257
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=42.99 E-value=2e+02 Score=25.04 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=35.9
Q ss_pred cchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCC
Q 006763 23 LELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI 73 (632)
Q Consensus 23 ~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I 73 (632)
..-..-....+..+...+++-+--++..|.|=++++||.+.-.||..|=.+
T Consensus 14 ~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~l 64 (115)
T cd00197 14 MGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYC 64 (115)
T ss_pred CCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 333444445555555566676777888999999999998888888776544
No 258
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=42.91 E-value=3.3e+02 Score=29.13 Aligned_cols=140 Identities=14% Similarity=0.157 Sum_probs=76.9
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhcCCC---CcHHHHHHHHHHhhcCCCChHHHhHHHHHhc------CCCchhh
Q 006763 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ---PDLAILAVNTFVKDSQDPNPLIRALAVRTMG------CIRVDKI 78 (632)
Q Consensus 8 s~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~---~el~lL~iNtl~kDl~~~np~ir~lALr~L~------~I~~~ei 78 (632)
-.+|-+|++.+-+++...++.++--+..-..-+ |-+...+...+..-+.. |-..-...+|.+. +|...--
T Consensus 177 q~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~le~Y 255 (343)
T cd08050 177 QLYFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNLHLEPY 255 (343)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCCchHHh
Confidence 356778888776666666665544333222211 22333334444433332 2211111222222 2344445
Q ss_pred HHHHHHHHHhhh----------CCCChHHHHHHHHHHHHhhhhccccccc--cchHHHHHHHhcCCC--hhHHHHHHHHH
Q 006763 79 TEYLCDPLQRCL----------KDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNN--PMVVANAVAAL 144 (632)
Q Consensus 79 ~~~l~~~v~~~L----------~d~~pyVRK~A~~al~kl~~~~p~~v~~--~~~~~~L~~lL~D~d--~~Vv~~Al~aL 144 (632)
+-.++|.+..|+ .+.++.+|.-|+..+..+++........ ..+...+.+.|.|.+ ......|+..|
T Consensus 256 lh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL 335 (343)
T cd08050 256 LHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGL 335 (343)
T ss_pred HHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHH
Confidence 556777777777 3456799999999999999876554431 134445555555433 33477888877
Q ss_pred HHHH
Q 006763 145 AEIE 148 (632)
Q Consensus 145 ~eI~ 148 (632)
..+.
T Consensus 336 ~~lG 339 (343)
T cd08050 336 SALG 339 (343)
T ss_pred HHhC
Confidence 7764
No 259
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=42.29 E-value=1.8e+02 Score=32.48 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=81.9
Q ss_pred CCCChHHHHHHHHHHHHhhhhcccc---------cccc--chHHHHHH-HhcCCChhHHHHHHHHHHHHHhcCCCCchhc
Q 006763 91 KDDDPYVRKTAAICVAKLYDINAEL---------VEDR--GFLESLKD-LISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (632)
Q Consensus 91 ~d~~pyVRK~A~~al~kl~~~~p~~---------v~~~--~~~~~L~~-lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l 158 (632)
.|-..-||..|..|+....+.-|.. +++. +=.+.|.. -|+|.++-+.+.|+-.+..|...+
T Consensus 6 r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gs------- 78 (728)
T KOG4535|consen 6 RSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGS------- 78 (728)
T ss_pred hhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhh-------
Confidence 3445668888888887665543321 1110 00122222 378999999999999888876543
Q ss_pred cHHHHHHHHHHh-----hccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChH
Q 006763 159 TSHTLSKLLTAL-----NECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTD 233 (632)
Q Consensus 159 ~~~~~~~Ll~~l-----~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~ 233 (632)
+.++..- ..++||.-...-.++. +..++=. -+.....+-++-.++|++-.+....+-..
T Consensus 79 -----k~fls~a~~~~~~~ftpf~v~~a~si~~---------~~r~l~~--~l~~e~~~~~~tq~~kcla~lv~~~p~~~ 142 (728)
T KOG4535|consen 79 -----KQFLSVAEDTSDHAFTPFSVMIACSIRE---------LHRCLLL--ALVAESSSQTVTQIIKCLANLVSNAPYDR 142 (728)
T ss_pred -----HHHHHHHhccCCcCCCchHHHHHHHHHH---------HHHHHHH--HHHHhcCchhHHHHHHHHHHHHhcCchHH
Confidence 1122221 1246665433222221 1121111 12234456677778887766532211111
Q ss_pred HHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhh
Q 006763 234 VVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQR 270 (632)
Q Consensus 234 ~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~ 270 (632)
+--.+..+..+-+-.++ ++|++++..+|-.+..|+..
T Consensus 143 l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t 180 (728)
T KOG4535|consen 143 LKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVST 180 (728)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhc
Confidence 11122223333333444 57899999999888888754
No 260
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.15 E-value=1.6e+02 Score=31.04 Aligned_cols=65 Identities=25% Similarity=0.321 Sum_probs=43.1
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHhhhhcccccc--ccchHHHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 006763 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE--DRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (632)
Q Consensus 84 ~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~--~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~ 150 (632)
..|...+.+.+|-|||.|+.-+.-+-----+... ....++.+.+|+.|.++ ..-|+.++..+.++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 4578899999999999999666544322001111 11356778899999888 55666677777654
No 261
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=41.36 E-value=58 Score=37.93 Aligned_cols=8 Identities=38% Similarity=0.513 Sum_probs=3.1
Q ss_pred CCCCcccc
Q 006763 604 PVPDLLGD 611 (632)
Q Consensus 604 ~~~~~~~~ 611 (632)
|++.++|.
T Consensus 315 pv~~ln~~ 322 (830)
T KOG1923|consen 315 PVGPLNSN 322 (830)
T ss_pred CCCCCCCC
Confidence 33333333
No 262
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=41.14 E-value=1.6e+02 Score=26.94 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcC
Q 006763 98 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (632)
Q Consensus 98 RK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~ 151 (632)
-..+++-+.-+.+.+++... ..+..|++-|...||.|+..|+.+|-.+.++-
T Consensus 22 Dw~~~l~icD~i~~~~~~~k--ea~~~l~krl~~~~~~vq~~aL~lld~lvkNc 73 (140)
T PF00790_consen 22 DWSLILEICDLINSSPDGAK--EAARALRKRLKHGNPNVQLLALTLLDALVKNC 73 (140)
T ss_dssp -HHHHHHHHHHHHTSTTHHH--HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHcCCccHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 34667777777777765554 36778888899999999999998886666553
No 263
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=40.97 E-value=30 Score=22.41 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=17.5
Q ss_pred HHHhHHHHHhcCCCchhhHHHHHH
Q 006763 61 LIRALAVRTMGCIRVDKITEYLCD 84 (632)
Q Consensus 61 ~ir~lALr~L~~I~~~ei~~~l~~ 84 (632)
.+|-.|..+|+.++.++-++.+..
T Consensus 2 ~vR~~aa~aLg~~~~~~a~~~L~~ 25 (30)
T smart00567 2 LVRHEAAFALGQLGDEEAVPALIK 25 (30)
T ss_pred HHHHHHHHHHHHcCCHhHHHHHHH
Confidence 578888888888888776665433
No 264
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=40.10 E-value=1.2e+02 Score=27.33 Aligned_cols=49 Identities=16% Similarity=0.333 Sum_probs=38.3
Q ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q 006763 179 VFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQME 227 (632)
Q Consensus 179 i~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~ 227 (632)
.++++=++.....+..+..++++.+..+|++.++-|.+.|.++|-++..
T Consensus 19 gy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~ 67 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCE 67 (122)
T ss_pred hHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHh
Confidence 3455555555555667788999999999999999999999999887654
No 265
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=39.34 E-value=1e+03 Score=32.43 Aligned_cols=267 Identities=18% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHhcCCCch--hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccc--------c--ccccchHHHHHHH-hcC
Q 006763 65 LAVRTMGCIRVD--KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE--------L--VEDRGFLESLKDL-ISD 131 (632)
Q Consensus 65 lALr~L~~I~~~--ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~--------~--v~~~~~~~~L~~l-L~D 131 (632)
+|.++++++... .....+-..+...+.+.++-+||.|+.++..+++.++. + +.. ....+..+ +.|
T Consensus 463 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~--vl~~ll~~aia~ 540 (2341)
T KOG0891|consen 463 LAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKE--VLSALLTVAIAD 540 (2341)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHH--HHHHHHHHhccC
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCH----HHHHHHHHHHHHhh
Q 006763 132 NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA----REAENIVERVTPRL 207 (632)
Q Consensus 132 ~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~----~~~~~il~~v~~~L 207 (632)
.+|.++...+..+. .+-...-.-...++.++..+.+..=-.|......+.+....++ .......-...+-+
T Consensus 541 ~~~~i~~~v~~~l~-----~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l 615 (2341)
T KOG0891|consen 541 TDPDIRIRVLSSLN-----ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTEL 615 (2341)
T ss_pred CCcchhhhHHhhhc-----cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchh
Q ss_pred cCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhcccceeEecc
Q 006763 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKY 286 (632)
Q Consensus 208 ~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~ 286 (632)
..+..+++-+-.-..+..+- ...+..+...+.+....+...+ ..++.+.-.++.++..|++..-.......+.++++.
T Consensus 616 ~~sg~~r~~~~~a~~~~~~i-~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~ 694 (2341)
T KOG0891|consen 616 EFSGMARTKEESAKLLCELI-ISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLI 694 (2341)
T ss_pred hhcchHHhHHHHHHHhhHHH-HHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHH
Q ss_pred CCc------hhHHHHHHHHHHHhcCccc--------HHHHHHHHHHhh-hhcCHHHHHHHHHHHHHHH
Q 006763 287 NDP------IYVKMEKLEIMIKLASDRN--------IDQVLLEFKEYA-TEVDVDFVRKAVRAIGRCA 339 (632)
Q Consensus 287 ~dd------~~Ik~~kL~lL~~L~n~~N--------i~~Iv~EL~~yl-~~~d~~~~~~~i~aIg~la 339 (632)
.+. ...|.-++..+.+++...- ...+++-|...+ ++....+++.+++.+|.++
T Consensus 695 ~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 695 IKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred HHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
No 266
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=39.19 E-value=61 Score=29.99 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=32.5
Q ss_pred HHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCC
Q 006763 49 NTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDD 93 (632)
Q Consensus 49 Ntl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~ 93 (632)
+.+..=|.++|+.|+.+||.++..-..+.+.+| -+.+.+++.|+
T Consensus 20 ~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY-~d~L~~Lldd~ 63 (141)
T PF07539_consen 20 DALLRLLSSRDPEVQKLALDCLLTWKDPYLTPY-KDNLENLLDDK 63 (141)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhH-HHHHHHHcCcc
Confidence 445566678888888888888888888877776 46666666653
No 267
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.32 E-value=7.7e+02 Score=29.51 Aligned_cols=329 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred hHHHHHHHH---Hhhh-----CCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 006763 78 ITEYLCDPL---QRCL-----KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (632)
Q Consensus 78 i~~~l~~~v---~~~L-----~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~ 149 (632)
+++++...+ .++. .|-+..++|-|+.+..-+.-..=...-+ |-.-+.. .++-|+.
T Consensus 432 lvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~d--F~~Wl~~--------------~llpEl~- 494 (978)
T KOG1993|consen 432 LVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILD--FDKWLQE--------------ALLPELA- 494 (978)
T ss_pred hhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHH--------------hhCHHhh-
Q ss_pred cCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhc
Q 006763 150 NSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHA-NCAVVLSAVKMILQQMEL 228 (632)
Q Consensus 150 ~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~-n~aVv~eaik~i~~~~~~ 228 (632)
.......+++..+.-+++. |.-+++ ..+....++..+..+|+.. +..|.+++++++-...+.
T Consensus 495 -~~~~~~RiiRRRVa~ilg~------Wvsvq~----------~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD 557 (978)
T KOG1993|consen 495 -NDHGNSRIIRRRVAWILGQ------WVSVQQ----------KLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDD 557 (978)
T ss_pred -hcccchhHHHHHHHHHHhh------hhheec----------hHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhh
Q ss_pred cC-ChHHHHHHHHhcccchhhhcc--CchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHhcC
Q 006763 229 IT-STDVVRNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLAS 305 (632)
Q Consensus 229 i~-~~~~~~~~~~~~~~~L~~Lls--~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n 305 (632)
.+ +++....+..++--.+..++. ++-+.|-.+|..+..++.+-...+.+
T Consensus 558 ~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P---------------------------- 609 (978)
T KOG1993|consen 558 WNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAP---------------------------- 609 (978)
T ss_pred ccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhH----------------------------
Q ss_pred cccHHHHHHHHHHhhh------hcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhch----------hhHHHHH
Q 006763 306 DRNIDQVLLEFKEYAT------EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVN----------YVVQEAI 369 (632)
Q Consensus 306 ~~Ni~~Iv~EL~~yl~------~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~----------~v~~e~i 369 (632)
...++..|+. +..+=++..++..+.++..........+-+++...++.+.+ .=.-|.|
T Consensus 610 ------~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW 683 (978)
T KOG1993|consen 610 ------YASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELW 683 (978)
T ss_pred ------HHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHH
Q ss_pred HHHHHHHhhCcccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCccCC------HHHHHHHHhhhCCCCCHHHHHHHH
Q 006763 370 IVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN------ADELLESFLESFPEEPAQVQLQLL 443 (632)
Q Consensus 370 ~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~------~~~~l~~l~~~f~~e~~~vq~~iL 443 (632)
.++..-..+.+...-.+++.|...++ ...+....++-|+.-|.-.... +..+++.+.+-+.+-..+...++|
T Consensus 684 ~~~L~n~~~l~p~ll~L~p~l~~~iE--~ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avL 761 (978)
T KOG1993|consen 684 LTTLMNSQKLTPELLLLFPHLLYIIE--QSTENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVL 761 (978)
T ss_pred HHHHhcccccCHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHhhcCCCCChH-----HHHHHHHHhhhcCCCChHH
Q 006763 444 TATVKLFLKKPTEGPQ-----QMIQVVLNNATVETDNPDL 478 (632)
Q Consensus 444 ta~~Kl~~~~p~e~~~-----~~v~~ll~~~~~~s~~~dv 478 (632)
-..--+.-..|- .. +.+.+++....++..+|-+
T Consensus 762 kiveili~t~~i--l~~~~~~~~L~~lf~~I~~~~~yP~~ 799 (978)
T KOG1993|consen 762 KIVEILIKTNPI--LGSLLFSPLLSRLFLSIAENDKYPYV 799 (978)
T ss_pred HHHHHHHhhhHH--HHhhhcchhhHHHHHHHHhCCCCchh
No 268
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=37.02 E-value=4.5e+02 Score=26.44 Aligned_cols=146 Identities=13% Similarity=0.142 Sum_probs=86.1
Q ss_pred hcCCCHHHHHHHHHHHHHhhhc----c-CChHHHHH--HHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCc--cch-
Q 006763 207 LQHANCAVVLSAVKMILQQMEL----I-TSTDVVRN--LCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP--TIL- 275 (632)
Q Consensus 207 L~~~n~aVv~eaik~i~~~~~~----i-~~~~~~~~--~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p--~~~- 275 (632)
|++.+++|+-.+|.+...+++. + .++..-+. .+..+...++.++ +.++.+|..+++-+..++...- .--
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 5566778888777777665432 2 12221111 1223344445555 4678899999999988875431 110
Q ss_pred ---hcccceeEe--ccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhc--CHHHHHHHHHHHHHHHHhhhhhHHH
Q 006763 276 ---AHEIKVFFC--KYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEV--DVDFVRKAVRAIGRCAIKLERAAER 348 (632)
Q Consensus 276 ---~~~~~~f~~--l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~--d~~~~~~~i~aIg~la~k~~~~~~~ 348 (632)
...-..|.. ...+=+.++..+|+- -...+++.|+.++.+. +..+....+.+++.++.+=|.....
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~--------Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~ 153 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEA--------EANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSR 153 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHH--------HHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHH--------HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHH
Confidence 011111211 111224566666642 2456888899888653 5777788889999999999999999
Q ss_pred HHHHHHHHHhhh
Q 006763 349 CISVLLELIKIK 360 (632)
Q Consensus 349 ~v~~Ll~ll~~~ 360 (632)
++.+++.+-...
T Consensus 154 Il~~ll~~~~~~ 165 (239)
T PF11935_consen 154 ILPALLSFNPNL 165 (239)
T ss_dssp HHHHHHHHHHS-
T ss_pred HHHHHHhcCccc
Confidence 999999987655
No 269
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=36.50 E-value=65 Score=36.10 Aligned_cols=8 Identities=25% Similarity=0.513 Sum_probs=3.3
Q ss_pred HHHHHhhc
Q 006763 445 ATVKLFLK 452 (632)
Q Consensus 445 a~~Kl~~~ 452 (632)
|.+|.|.-
T Consensus 159 a~~Kyy~g 166 (574)
T PF07462_consen 159 ARAKYYIG 166 (574)
T ss_pred HHHHHhcC
Confidence 34444443
No 270
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=36.32 E-value=3.3e+02 Score=25.67 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=53.4
Q ss_pred HHHHHHHHhc--CcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh---chhhHHHHH
Q 006763 295 EKLEIMIKLA--SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK---VNYVVQEAI 369 (632)
Q Consensus 295 ~kL~lL~~L~--n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~---~~~v~~e~i 369 (632)
...++|.++. .+.-..+|++++...+-.....-...-++.++.++.++|-....|.+.+-++++.- ...+....+
T Consensus 37 LG~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll 116 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLL 116 (158)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4445555443 34445567777766553322222223456677777776655555555444444332 223334444
Q ss_pred HHHHHHHhhCcccHHHHHHHHHHhhccCChhhHHHH
Q 006763 370 IVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKAS 405 (632)
Q Consensus 370 ~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~ 405 (632)
..+.=+++-.++.++.++..|-+.+-. .+.+++.+
T Consensus 117 ~Al~PLi~~s~~lrd~lilvLRKamf~-r~~~~R~~ 151 (158)
T PF14676_consen 117 RALLPLIKFSPSLRDSLILVLRKAMFS-RELDARQM 151 (158)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTT--SSHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHcc-ccHHHHHH
Confidence 555556666777777777766665533 23345443
No 271
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=36.13 E-value=43 Score=37.01 Aligned_cols=130 Identities=19% Similarity=0.263 Sum_probs=81.7
Q ss_pred hcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHH-HhhcCCCChHHHhHHHHHhcCCC--chhhHH--------------
Q 006763 18 MQTENLELKKLVYLYLINYAKSQPDLAILAVNTF-VKDSQDPNPLIRALAVRTMGCIR--VDKITE-------------- 80 (632)
Q Consensus 18 ~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl-~kDl~~~np~ir~lALr~L~~I~--~~ei~~-------------- 80 (632)
+.+.+--.||..|=|+..+....|++. +.++ .--++|+||--|++||..++.|- +..+..
T Consensus 21 ~~~~~~~~~~~~ygyw~~~~pd~~~~g---~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~ 97 (728)
T KOG4535|consen 21 LSTIKSIEKKVLYGYWSAFIPDTPELG---SPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFS 97 (728)
T ss_pred HHHHhhhhhhhhhceeeeecCCCCCCC---CceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchH
Confidence 345566789999999999988777632 2222 23588999999999999987652 111110
Q ss_pred --------HHHHHHHhhh-CCCChHHHHHHHHHHHHhhhhcc-ccccc---cchHHHHHHHhcCCChhHHHHHHHHHHHH
Q 006763 81 --------YLCDPLQRCL-KDDDPYVRKTAAICVAKLYDINA-ELVED---RGFLESLKDLISDNNPMVVANAVAALAEI 147 (632)
Q Consensus 81 --------~l~~~v~~~L-~d~~pyVRK~A~~al~kl~~~~p-~~v~~---~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI 147 (632)
.+...+.-.| ...+|-|---.+-|+..+..-.| +.++- .++...++.+++.+|+.|..+++.++.-|
T Consensus 98 v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~ 177 (728)
T KOG4535|consen 98 VMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAI 177 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Confidence 1111111111 22344444455666666665555 22221 14668899999999999999999888776
Q ss_pred Hhc
Q 006763 148 EEN 150 (632)
Q Consensus 148 ~~~ 150 (632)
...
T Consensus 178 v~t 180 (728)
T KOG4535|consen 178 VST 180 (728)
T ss_pred Hhc
Confidence 543
No 272
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=35.97 E-value=3e+02 Score=24.12 Aligned_cols=47 Identities=13% Similarity=0.259 Sum_probs=25.0
Q ss_pred HHHHHHHhhhhc----CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 006763 312 VLLEFKEYATEV----DVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK 358 (632)
Q Consensus 312 Iv~EL~~yl~~~----d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~ 358 (632)
|+..+-+-+.+. +..-++.++++|+.+.....+....+...++-.|+
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~ 62 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQ 62 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444432 44557788888887776544444444444444433
No 273
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=35.93 E-value=60 Score=22.00 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=24.7
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 006763 120 GFLESLKDLISDNNPMVVANAVAALAEIE 148 (632)
Q Consensus 120 ~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~ 148 (632)
+.++.|.+++...++.++.+|+.+|..|.
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 56788888999889999999999998764
No 274
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=35.65 E-value=5.6e+02 Score=27.10 Aligned_cols=98 Identities=12% Similarity=0.198 Sum_probs=58.1
Q ss_pred HHHHhhcCCCChHHHhHHHHHhcCCCc---hhhHHHHH-------HHHHhhhCCCC-------------hHHHHHHHHHH
Q 006763 49 NTFVKDSQDPNPLIRALAVRTMGCIRV---DKITEYLC-------DPLQRCLKDDD-------------PYVRKTAAICV 105 (632)
Q Consensus 49 Ntl~kDl~~~np~ir~lALr~L~~I~~---~ei~~~l~-------~~v~~~L~d~~-------------pyVRK~A~~al 105 (632)
..+.+-|++..+.+...|||.|..|.. ...+..+. +.+.+++..+. +-||..++.-+
T Consensus 59 k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~ 138 (330)
T PF11707_consen 59 KLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFW 138 (330)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHH
Confidence 345677778778778899998888754 45555544 23444443211 37888888888
Q ss_pred HHhhhhcccccc-----ccchHHHHHHHhcCCChhHHHHHHHHHHH
Q 006763 106 AKLYDINAELVE-----DRGFLESLKDLISDNNPMVVANAVAALAE 146 (632)
Q Consensus 106 ~kl~~~~p~~v~-----~~~~~~~L~~lL~D~d~~Vv~~Al~aL~e 146 (632)
+.+....+..+. ..++...+-+-|.+.++.++.-.+..|.+
T Consensus 139 Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 139 LSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKD 184 (330)
T ss_pred HHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 887775443222 22233333344444455666666666654
No 275
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=35.22 E-value=6.6e+02 Score=27.86 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=56.3
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhc-----cChhhHHHHHHHHhccc-cCC
Q 006763 119 RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNE-----CTEWGQVFILDALSRYK-AAD 192 (632)
Q Consensus 119 ~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~-----~~ew~qi~lL~lL~~y~-~~~ 192 (632)
++|++.+...+...|...+..+..++.....++..-..-.....+.+|++.+.. -+--.|...+..|+.+. |..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 457778888888778877777777777766554321122233455666666532 23445667777777654 222
Q ss_pred HHHH---HHHHHHHHHhhcCCCHHHHHH
Q 006763 193 AREA---ENIVERVTPRLQHANCAVVLS 217 (632)
Q Consensus 193 ~~~~---~~il~~v~~~L~~~n~aVv~e 217 (632)
.+.. .-+.+.+.+.++...|-|+|.
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fk 421 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFK 421 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHH
Confidence 1111 123455566666666666554
No 276
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=34.62 E-value=4.6e+02 Score=30.14 Aligned_cols=110 Identities=13% Similarity=0.170 Sum_probs=67.9
Q ss_pred CcccHHHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHH--------------HHH
Q 006763 305 SDRNIDQVLLEFKEYAT-EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQ--------------EAI 369 (632)
Q Consensus 305 n~~Ni~~Iv~EL~~yl~-~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~--------------e~i 369 (632)
+.+ .+.+|+.++.+-= ..+.++++.-++-++.++...+.....|++.|++.+.-....... .+-
T Consensus 68 d~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH 146 (563)
T PF05327_consen 68 DSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVH 146 (563)
T ss_dssp -SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH---------------HH
T ss_pred hhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHH
Confidence 344 7778888876531 467888888888888888888888888888888877654433222 244
Q ss_pred HHHHHHHhhCcccHHHHHHHHHHhhccCChhhH-----HHHHHHHHhcccCc
Q 006763 370 IVIKDIFRRYPNTYESIIATLCESLDTLDEPEA-----KASMIWIIGEYAER 416 (632)
Q Consensus 370 ~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a-----~~~~iWiLGEy~~~ 416 (632)
..++.|++-.|.....+...+.+.+.....+.. ...++|+. +|+..
T Consensus 147 ~~L~~Il~lvP~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~-~Y~P~ 197 (563)
T PF05327_consen 147 DALQKILRLVPTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLT-EYCPE 197 (563)
T ss_dssp HHHHHHHHH-GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHH-CC-GG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHH-cchHH
Confidence 578888888898877777777776654444332 23445544 45543
No 277
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=34.52 E-value=76 Score=28.54 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=35.5
Q ss_pred chhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhh-ccccccccchHHHHHHHhcCCC
Q 006763 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNN 133 (632)
Q Consensus 75 ~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~-~p~~v~~~~~~~~L~~lL~D~d 133 (632)
.+.+.+.+...+...-...++.+.+++.-|+...... +++.+....+++.+..+|.+.+
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~ 139 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPE 139 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHH
Confidence 3444444444333333333388889999998887764 3455554567888888885444
No 278
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.27 E-value=1.6e+03 Score=31.91 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=46.5
Q ss_pred HHHHHHHhhcCCCChHHHhHHHHHhcCCCchh--------------------h--HHHHHHHHHhhhCCCChHHHHHHHH
Q 006763 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK--------------------I--TEYLCDPLQRCLKDDDPYVRKTAAI 103 (632)
Q Consensus 46 L~iNtl~kDl~~~np~ir~lALr~L~~I~~~e--------------------i--~~~l~~~v~~~L~d~~pyVRK~A~~ 103 (632)
++.-+..||+.|.+-..-..++|-.+.+.... + .-.++++|..++.+.+.-+|+....
T Consensus 927 ~~~a~~~~elr~~a~~~~~~il~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~ 1006 (3550)
T KOG0889|consen 927 LFYATSCKELRDEAQDFLEAILRHFALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVR 1006 (3550)
T ss_pred HHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHH
Confidence 34455678888887777666666555443221 1 1256788888999999999999999
Q ss_pred HHHHhhhhc
Q 006763 104 CVAKLYDIN 112 (632)
Q Consensus 104 al~kl~~~~ 112 (632)
|+..++...
T Consensus 1007 ~l~~i~~~~ 1015 (3550)
T KOG0889|consen 1007 ALKVIFSTS 1015 (3550)
T ss_pred HHHHHHHHH
Confidence 988887643
No 279
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.04 E-value=3e+02 Score=32.23 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=42.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHHhhccCChhhHH
Q 006763 338 CAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAK 403 (632)
Q Consensus 338 la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~ 403 (632)
+..+|.+..+|+++++..+...-...=.+-+...+..++..||+.....+..+..+=.++...+.+
T Consensus 576 ~f~~~~~~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~~~l~~il~~R~dls~~~~k 641 (667)
T KOG2286|consen 576 FFRKYGSDVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPKDHLEAILKIRGDLSRSEKK 641 (667)
T ss_pred HHHHhCcchhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhcCCCHHHHH
Confidence 444455567788777666554433222233444667788889999888888887766677665544
No 280
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=33.88 E-value=1.5e+02 Score=25.14 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=42.5
Q ss_pred CCCChHHHHHHHHHHHHhhhhccccccc--cchHHHHHHHhcC--CChhHHHHHHHHHHHHHh
Q 006763 91 KDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISD--NNPMVVANAVAALAEIEE 149 (632)
Q Consensus 91 ~d~~pyVRK~A~~al~kl~~~~p~~v~~--~~~~~~L~~lL~D--~d~~Vv~~Al~aL~eI~~ 149 (632)
.+.+..+|..|+..+..+.+...+.... ..+...+.+.+.| +...+...|+..|.++..
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4568899999999999999875543321 1455666666664 456688899999988843
No 281
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=33.79 E-value=68 Score=30.87 Aligned_cols=39 Identities=28% Similarity=0.372 Sum_probs=20.2
Q ss_pred ChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHH
Q 006763 59 NPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYV 97 (632)
Q Consensus 59 np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyV 97 (632)
||.||.-|+|+|-+....++.-|+-.-|+-+=-|...||
T Consensus 84 ~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~~~~l 122 (175)
T cd00871 84 HPLVLQYAVRVLESYPVETVFFYIPQIVQALRYDKMGYV 122 (175)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccccchH
Confidence 566666666666666666655554443333323343333
No 282
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=33.12 E-value=1.6e+02 Score=28.45 Aligned_cols=92 Identities=20% Similarity=0.189 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCC--CChHHHHHH
Q 006763 24 ELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVRKTA 101 (632)
Q Consensus 24 ~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d--~~pyVRK~A 101 (632)
+.|.+.+=+= .+...+|+... .+.+-..-.|+..+.-|++.|..-...+.... ..+|.. +++.||+-|
T Consensus 28 ~ek~~lW~~R-~~l~~~p~aL~----~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~A-----L~LL~~~f~~~~VR~yA 97 (184)
T PF00613_consen 28 EEKELLWKYR-YYLMNNPEALP----KLLRSVDWWNPEEVSEAYQLLLQWPPISPEDA-----LELLSPNFPDPFVRQYA 97 (184)
T ss_dssp HHHHHHHHTH-HHHTTSGGGHH----HHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHH-----HHCTSTT---HHHHHHH
T ss_pred HHHHHHHHCC-HHhhhCchHHH----HHHhhCCCCchhhHHHHHHHHHcCCCCCHHHH-----HHHHHhhccHHHHHHHH
Confidence 3444444433 34445555222 23333334455555555555544332222221 222222 346666666
Q ss_pred HHHHHHhhhhccccccccchHHHHHHHhc
Q 006763 102 AICVAKLYDINAELVEDRGFLESLKDLIS 130 (632)
Q Consensus 102 ~~al~kl~~~~p~~v~~~~~~~~L~~lL~ 130 (632)
+-++-+ ..++.+. .+++.|.++|+
T Consensus 98 v~~L~~---~~d~~l~--~yLpQLVQaLr 121 (184)
T PF00613_consen 98 VRRLES---LSDEELL--FYLPQLVQALR 121 (184)
T ss_dssp HHHHCT---S-HHHHH--HHHHHHHHHGG
T ss_pred HHHHHH---cCchHHH--HHHHHHHHHhe
Confidence 655543 2223232 25555555554
No 283
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=32.88 E-value=82 Score=27.94 Aligned_cols=30 Identities=37% Similarity=0.426 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhcC
Q 006763 122 LESLKDLISDNNPMVVANAVAALAEIEENS 151 (632)
Q Consensus 122 ~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~ 151 (632)
++.|.+-|.|.++.|+..|+.+|.+.+...
T Consensus 10 i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 10 IELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 467778888999999999999999998765
No 284
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=32.52 E-value=4.4e+02 Score=30.68 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhc-CCChhHHHHHHHHHHHHH
Q 006763 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIE 148 (632)
Q Consensus 78 i~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~-D~d~~Vv~~Al~aL~eI~ 148 (632)
...++..-+.....++++.+|+.+.--+.++....|+... ...++++|. ...+++.+.++..+-+..
T Consensus 439 ~~~~~q~L~~i~~~~p~~~lR~~~~~ll~~iL~~~p~~~r----f~~i~dlLe~c~~~~~k~~~I~~lKd~i 506 (633)
T PF08568_consen 439 FMQFLQALLLISVYCPSPELRKIAFTLLTRILHLFPEETR----FKFIRDLLENCPFESLKASAIGWLKDEI 506 (633)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCcHhH----HHHHHHHHhcCCCHhHHHHHHHHHHHHH
Confidence 3334444445555679999999999999999999998664 377788776 456888888888886643
No 285
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=31.85 E-value=3.7e+02 Score=30.60 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=37.6
Q ss_pred HHhhCcccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCccC-CHHHHHHHHhhhCCCCC
Q 006763 375 IFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-NADELLESFLESFPEEP 435 (632)
Q Consensus 375 ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~-~~~~~l~~l~~~f~~e~ 435 (632)
|.++.++.-+.+++.|+-.+.+-+.....-.++-+|..|+.... ...+.++.+...+..-.
T Consensus 226 I~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv~l~~~~E~l~e~~~~~p~~~ 287 (851)
T KOG3723|consen 226 IKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEPVALNSFLEMLKEIGERFPYLT 287 (851)
T ss_pred HHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCccchhhHHHHHHHHHHhCCCcc
Confidence 34455666667777777766655555566666677777766543 35566666666665443
No 286
>PTZ00479 RAP Superfamily; Provisional
Probab=31.15 E-value=7.5e+02 Score=27.26 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=57.2
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHH
Q 006763 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI 199 (632)
Q Consensus 120 ~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~i 199 (632)
+|.+.+..+...-.|.=++.-+.++....-.+ ..+....+......|..++.-+-..++-.|++..-.+..-...+
T Consensus 83 ~f~~Rilel~dtL~Pqqig~Ilyg~gKsr~~~----~efy~~~~~~v~~~L~~fssh~L~~i~wALsrL~Ird~~fL~~~ 158 (435)
T PTZ00479 83 GFTNRLLELSDTLTPQQIGYIFYGYGKSRFLN----PEFYEKMLKFVQPLLPNFYSHSLMCIAWALNRVQIRDEAFLSRF 158 (435)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccC----HHHHHHHHHHHHHHhhhcCccHHHHHHHHHHhcCCCcHHHHHHH
Confidence 46677777776666666655555554443222 12222333344444556666666667777777666665555555
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006763 200 VERVTPRLQHANCAVVLSAVKMILQQ 225 (632)
Q Consensus 200 l~~v~~~L~~~n~aVv~eaik~i~~~ 225 (632)
.+.+.....+-++.-+..++.++.++
T Consensus 159 ak~vl~r~~~~r~~dl~k~~nslakL 184 (435)
T PTZ00479 159 AKEVGEKFDDIRTTDLIKICNSLAKL 184 (435)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHh
Confidence 55555555555555556666665554
No 287
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=30.87 E-value=5.3e+02 Score=28.63 Aligned_cols=172 Identities=16% Similarity=0.258 Sum_probs=86.2
Q ss_pred HHHHhhcCCCChHHHhHHHHHhcCCCc------hhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHhhh----hcccccc
Q 006763 49 NTFVKDSQDPNPLIRALAVRTMGCIRV------DKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYD----INAELVE 117 (632)
Q Consensus 49 Ntl~kDl~~~np~ir~lALr~L~~I~~------~ei~~~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~----~~p~~v~ 117 (632)
+.+.++-+-.|+++--.-.|.++.++. ..+++.+...++...++ ++|.-=--...++.-+.+ .+|+.+.
T Consensus 33 ~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~ 112 (435)
T PF03378_consen 33 ALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVS 112 (435)
T ss_dssp HHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---
T ss_pred HHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHH
Confidence 344555557899988888888887653 35555555666665555 555444444444444444 3455332
Q ss_pred --ccchHHHHHHHhcCCChhH---HHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhH----HHHHHHHhcc
Q 006763 118 --DRGFLESLKDLISDNNPMV---VANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQ----VFILDALSRY 188 (632)
Q Consensus 118 --~~~~~~~L~~lL~D~d~~V---v~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~q----i~lL~lL~~y 188 (632)
+..+.+.+...|...-... +..-++.+.|..... .. .+.+..|+..|-.+.-|.+ --+.|+|..|
T Consensus 113 ~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~--~~----p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~ 186 (435)
T PF03378_consen 113 QFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSS--PL----PDAYKQLFPPLLSPALWERRGNIPALVRLLQAY 186 (435)
T ss_dssp HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S------TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CC----cHHHHHHHHHHcCcchhccCCCcCcHHHHHHHH
Confidence 1245666777776322222 334556666665511 11 1123334444446666742 2355555555
Q ss_pred ccCCHH------HHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHhh
Q 006763 189 KAADAR------EAENIVERVTPRLQHA-NCAVVLSAVKMILQQM 226 (632)
Q Consensus 189 ~~~~~~------~~~~il~~v~~~L~~~-n~aVv~eaik~i~~~~ 226 (632)
...++. ..+.++.....++.|. +..--|+-+..++...
T Consensus 187 i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~ 231 (435)
T PF03378_consen 187 IKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENL 231 (435)
T ss_dssp HHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS
T ss_pred HHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHC
Confidence 433222 2245566555666653 5555666666666543
No 288
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.84 E-value=3e+02 Score=29.40 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCch-hhHHHHH-----HHHHhhhCCCChHHHHHHH
Q 006763 29 VYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD-KITEYLC-----DPLQRCLKDDDPYVRKTAA 102 (632)
Q Consensus 29 ~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~-ei~~~l~-----~~v~~~L~d~~pyVRK~A~ 102 (632)
+|=|...+++++ .+.-.+-.++--+. |-+-.-+..+|+.+... |+...+. ..+.+++.|++..=-|+++
T Consensus 230 ah~hAr~ia~e~--~l~~L~Eal~A~~d---p~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~ 304 (461)
T KOG4199|consen 230 AHGHARTIAKEG--ILTALTEALQAGID---PDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLA 304 (461)
T ss_pred hhHHHHHHHHhh--hHHHHHHHHHccCC---ccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Q ss_pred HHHHHhhhh------ccccccccchHHHHHHHhc--CCChhHHHHHHHHHHHHHhcCCC
Q 006763 103 ICVAKLYDI------NAELVEDRGFLESLKDLIS--DNNPMVVANAVAALAEIEENSSR 153 (632)
Q Consensus 103 ~al~kl~~~------~p~~v~~~~~~~~L~~lL~--D~d~~Vv~~Al~aL~eI~~~~~~ 153 (632)
-.++++.+. ..+.+.+.+-.+.+..++. ..||.|+..++..++-++-..|.
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pd 363 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPD 363 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcc
No 289
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.55 E-value=4.4e+02 Score=32.51 Aligned_cols=156 Identities=18% Similarity=0.185 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHhhCccch--hcccceeEeccCCc-hhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHH
Q 006763 253 EPEIQYVALRNINLIVQRRPTIL--AHEIKVFFCKYNDP-IYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVR 329 (632)
Q Consensus 253 ~~niryvaL~~l~~i~~~~p~~~--~~~~~~f~~l~~dd-~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~ 329 (632)
+|+||-+.+..|..=++.+|+.| ..+++.+--.-+|- ..||++.+.+|-.|... +++...++. |..
T Consensus 300 ~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~-------~~~~~~L~l----Fts 368 (1048)
T KOG2011|consen 300 DPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK-------DEDKDKLEL----FTS 368 (1048)
T ss_pred chHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc-------cccchHHHH----HHH
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhH-HHHHHHHHHHHhhCcccHHHHHHHHHHhhccCChhhHHHHHHH
Q 006763 330 KAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVV-QEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIW 408 (632)
Q Consensus 330 ~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~-~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iW 408 (632)
+-=..|-.++.+.-..+-..+...+-++.....++. .++..+..-+...+|..+..+...|+..+ .++.+.. -.|
T Consensus 369 RFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~---~~~~a~~-e~~ 444 (1048)
T KOG2011|consen 369 RFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKL---FERVANS-ERV 444 (1048)
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHh---hccccch-hhh
Q ss_pred HHhcccCccCCHHHH
Q 006763 409 IIGEYAERIDNADEL 423 (632)
Q Consensus 409 iLGEy~~~i~~~~~~ 423 (632)
.-+.+.....+.+.+
T Consensus 445 ~~~~~~~~~~~~~~l 459 (1048)
T KOG2011|consen 445 GAEKSLLKAENRELL 459 (1048)
T ss_pred ccccccccccccchH
No 290
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.25 E-value=5.2e+02 Score=31.41 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhh---hccccc-c--ccchHHHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 006763 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYD---INAELV-E--DRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (632)
Q Consensus 77 ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~---~~p~~v-~--~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~ 150 (632)
+|+..+....++.|+|.+-.+|=+|..++.-... .+++.. + +..| +.+...+.++||.++-.|+..+..++..
T Consensus 799 ~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W-~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTW-PSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhh-hHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 6788888889999999999999999998765433 344332 2 1234 4555667788999999999999999887
Q ss_pred CC
Q 006763 151 SS 152 (632)
Q Consensus 151 ~~ 152 (632)
.+
T Consensus 878 sg 879 (1014)
T KOG4524|consen 878 SG 879 (1014)
T ss_pred hh
Confidence 65
No 291
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=28.91 E-value=1.3e+02 Score=29.59 Aligned_cols=66 Identities=20% Similarity=0.200 Sum_probs=47.1
Q ss_pred hhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccc
Q 006763 53 KDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED 118 (632)
Q Consensus 53 kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~ 118 (632)
+=..|.|...|-.|+-+.-......-.+.+...+..++.|++-+|+|..--++--+.+.+|+.+..
T Consensus 122 ~W~~s~~~W~rR~ai~~~l~~~~~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~ 187 (208)
T cd07064 122 EWSTDENFWLRRTAILHQLKYKEKTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRD 187 (208)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 334677887766665443332222224667777889999999999999888888899999988763
No 292
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=28.71 E-value=1.3e+02 Score=26.07 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHH
Q 006763 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (632)
Q Consensus 78 i~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~ 127 (632)
.++.++..+..+++|-+|.||.-|..-+--+.+.+|+.+-..+|.+.+..
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~ 57 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPN 57 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHH
Confidence 45677888999999999999999999998899999998322356665554
No 293
>PTZ00479 RAP Superfamily; Provisional
Probab=28.69 E-value=8.3e+02 Score=26.95 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=45.7
Q ss_pred HHHHHHhhCcccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCccCCHHHHHHHHh----hhCCCCCHHHHHHHHHHH
Q 006763 371 VIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFL----ESFPEEPAQVQLQLLTAT 446 (632)
Q Consensus 371 ~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~~~~~l~~l~----~~f~~e~~~vq~~iLta~ 446 (632)
.+...-..+++++..+.+.....+..+ .+.....++|.+|... +.+ +.++..+. .++.+-.+.-=..++.++
T Consensus 106 g~gKsr~~~~efy~~~~~~v~~~L~~f-ssh~L~~i~wALsrL~--Ird-~~fL~~~ak~vl~r~~~~r~~dl~k~~nsl 181 (435)
T PTZ00479 106 GYGKSRFLNPEFYEKMLKFVQPLLPNF-YSHSLMCIAWALNRVQ--IRD-EAFLSRFAKEVGEKFDDIRTTDLIKICNSL 181 (435)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHhhhc-CccHHHHHHHHHHhcC--CCc-HHHHHHHHHHHHhhccccCchhHHHHHHHH
Confidence 333333335566666666666666654 3456888999998764 333 44555443 334433344444577888
Q ss_pred HHHhhcC
Q 006763 447 VKLFLKK 453 (632)
Q Consensus 447 ~Kl~~~~ 453 (632)
+||....
T Consensus 182 akLg~~~ 188 (435)
T PTZ00479 182 AKLGGYT 188 (435)
T ss_pred HHhcCCc
Confidence 8885533
No 294
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=27.93 E-value=1.2e+03 Score=28.49 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=52.8
Q ss_pred ccCCchhHHHHHHHHHHH--h-cCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhh
Q 006763 285 KYNDPIYVKMEKLEIMIK--L-ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE-RAAERCISVLLELIKI 359 (632)
Q Consensus 285 l~~dd~~Ik~~kL~lL~~--L-~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~-~~~~~~v~~Ll~ll~~ 359 (632)
-.+|+..||++=|.+-.+ + +++.=.+..+.-|.+=+...+...+.++...+-.|+.+|. ....|...-+...++.
T Consensus 226 pk~D~~~I~reDL~~sLr~al~stP~Fa~~~lp~LlEKL~as~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWsaik~ 304 (1030)
T KOG1967|consen 226 PKDDTITIRREDLKASLRSALVSTPSFAPFALPLLLEKLNASDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWSAIKP 304 (1030)
T ss_pred CCCCcccccHHHHHHHHHHHHhcCccchhhHHHHHHHHhccccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHHHHHH
Confidence 347777788765544443 3 3555566778888888888888888899999999999997 4445555555555543
No 295
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=27.54 E-value=4.8e+02 Score=32.76 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhH
Q 006763 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (632)
Q Consensus 79 ~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~V 136 (632)
+-...+.+..++.+.+++||-+|+-|+.-+++..-...- ...++.+-.++.|.+..+
T Consensus 814 ~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m-~~v~~~~~~ll~~~~~~~ 870 (1549)
T KOG0392|consen 814 LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETM-ATVINGFLPLLGDLDKFV 870 (1549)
T ss_pred hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccchhhHh
Confidence 446678899999999999999999999988875432111 124455555666555444
No 296
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=27.52 E-value=52 Score=35.82 Aligned_cols=9 Identities=33% Similarity=0.549 Sum_probs=4.0
Q ss_pred HHhhHHHHH
Q 006763 478 LRDRAYIYW 486 (632)
Q Consensus 478 vrdRA~~y~ 486 (632)
.-|-|.||.
T Consensus 163 ~~daa~FY~ 171 (480)
T KOG2675|consen 163 FKDAAQFYT 171 (480)
T ss_pred HHHHHHHHH
Confidence 344444544
No 297
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=27.39 E-value=2.5e+02 Score=26.18 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=7.8
Q ss_pred CChHHHHHHHHHHHH
Q 006763 93 DDPYVRKTAAICVAK 107 (632)
Q Consensus 93 ~~pyVRK~A~~al~k 107 (632)
+++.||+-|+-++.+
T Consensus 83 ~~~~vr~yAv~~L~~ 97 (152)
T cd00864 83 PDPVVRQYAVRVLES 97 (152)
T ss_pred CCHHHHHHHHHHHHh
Confidence 335555555555443
No 298
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=26.97 E-value=5.9e+02 Score=27.97 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=17.7
Q ss_pred HHhhhcCCCChHHHhhHHHHHHH
Q 006763 466 LNNATVETDNPDLRDRAYIYWRL 488 (632)
Q Consensus 466 l~~~~~~s~~~dvrdRA~~y~~L 488 (632)
+..|. +|.+.-|-+||.+||..
T Consensus 346 ia~c~-sS~HFQVAEraL~~wnN 367 (457)
T KOG2085|consen 346 IARCV-SSPHFQVAERALYLWNN 367 (457)
T ss_pred HHHHc-CChhHHHHHHHHHHHhh
Confidence 44455 68899999999999983
No 299
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=26.69 E-value=2.2e+02 Score=30.62 Aligned_cols=50 Identities=16% Similarity=0.426 Sum_probs=35.5
Q ss_pred CchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcC-HHHHHHHHHHHHH
Q 006763 288 DPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVD-VDFVRKAVRAIGR 337 (632)
Q Consensus 288 dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d-~~~~~~~i~aIg~ 337 (632)
++......+++++-+--..+.+++|+++|.+|-.+.+ .++..+.++.|..
T Consensus 257 ~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k 307 (401)
T KOG1684|consen 257 DESFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKK 307 (401)
T ss_pred CccccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 3344455688888887777899999999998875332 5677776666653
No 300
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=26.28 E-value=8.6e+02 Score=26.38 Aligned_cols=59 Identities=20% Similarity=0.407 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHhhhh----cc---c----cccccchHHHHHHHhcCCC---hhHHHHHHHHHHHHHhcCCC
Q 006763 95 PYVRKTAAICVAKLYDI----NA---E----LVEDRGFLESLKDLISDNN---PMVVANAVAALAEIEENSSR 153 (632)
Q Consensus 95 pyVRK~A~~al~kl~~~----~p---~----~v~~~~~~~~L~~lL~D~d---~~Vv~~Al~aL~eI~~~~~~ 153 (632)
+|-|+..+-.++|+... ++ + +++...+...|+..+.... +.|.+.|+..+..+..++|.
T Consensus 70 ~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT 142 (379)
T PF06025_consen 70 SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPT 142 (379)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCc
Confidence 56677777676665542 11 1 1221345556666666543 67888888888888777764
No 301
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=25.85 E-value=3.1e+02 Score=26.59 Aligned_cols=95 Identities=18% Similarity=0.147 Sum_probs=43.3
Q ss_pred CcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCC--CChHHHH
Q 006763 22 NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVRK 99 (632)
Q Consensus 22 d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d--~~pyVRK 99 (632)
..+.|++.+-+=-.+...+|+... .+.+-..=.|+....-|+..|..=...+..+. ..+|.. +++.||+
T Consensus 24 ~~eek~llW~~R~~~l~~~p~aL~----~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~a-----L~LL~~~~~~~~Vr~ 94 (184)
T smart00145 24 TAEEKDLIWKFRHYYLTNNPKALP----KFLLSVNWSDADEVAQALSLLKKWAPLDPEDA-----LELLSPKFPDPFVRA 94 (184)
T ss_pred CHHHHHHHHHChHHHHhcChHHHH----HHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHH-----HHHhCccCCCHHHHH
Confidence 345666665553333345555321 12222333455555555655555433332222 112221 3567777
Q ss_pred HHHHHHHHhhhhccccccccchHHHHHHHhc
Q 006763 100 TAAICVAKLYDINAELVEDRGFLESLKDLIS 130 (632)
Q Consensus 100 ~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~ 130 (632)
-|+-++-+ ..++.+. .+++.|.+.|+
T Consensus 95 yAV~~L~~---~~d~~l~--~yLpQLVQaLr 120 (184)
T smart00145 95 YAVERLES---ASDEELL--LYLLQLVQALK 120 (184)
T ss_pred HHHHHHHh---CCHHHHH--HHHHHHHHHHH
Confidence 77666543 2233333 25555555554
No 302
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=25.71 E-value=2e+02 Score=26.37 Aligned_cols=53 Identities=9% Similarity=0.217 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCC--hHHHHHHHHHhhhcCCCChHHHhhHHHHHHHh
Q 006763 436 AQVQLQLLTATVKLFLKKPTEG--PQQMIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (632)
Q Consensus 436 ~~vq~~iLta~~Kl~~~~p~e~--~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL 489 (632)
......+|....+.|.+.|+-. .-..+..+...|... .|+++++.|...|.--
T Consensus 67 ~~~~~~~l~~~i~~F~r~pelm~~~N~~FIQ~i~~~~~~-~~~~~k~~A~~LY~~Y 121 (135)
T PF13981_consen 67 DKLNQAILNFFIDRFSRQPELMISNNGAFIQLIAQAMTH-GDDEIKQKARDLYKKY 121 (135)
T ss_dssp HHHHHHCHHHHHHHHHHTTTHHHHTHHHHHHHHHHHCC--TSCCCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhCHhHHHHcccHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Confidence 3445578899999999998630 122333344445543 4888999998766643
No 303
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=25.18 E-value=8.8e+02 Score=27.54 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=47.3
Q ss_pred CchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCc-hhHHHHHHHHHHHhcCcccHH--HHHHHHHHhhhhcCHHHH
Q 006763 252 AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDP-IYVKMEKLEIMIKLASDRNID--QVLLEFKEYATEVDVDFV 328 (632)
Q Consensus 252 ~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd-~~Ik~~kL~lL~~L~n~~Ni~--~Iv~EL~~yl~~~d~~~~ 328 (632)
..-+-+|+..+.+...+.. ++-+.+.++..+..|| .+||...+.++|.|....-.. .++.-+..=+.+.+..+.
T Consensus 169 k~v~~k~l~~~~fesflk~---l~fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INKlGDk~~kvs 245 (821)
T COG5593 169 KEVQNKYLKQRIFESFLKN---LRFRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLGDKRDKVS 245 (821)
T ss_pred hhhcchHHHHHHHHHHHHH---HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhccchhhhh
Confidence 3334455555555444432 3334455667787888 799999999999987654221 233333333344444343
Q ss_pred HHHHHHHHHHHHhhhh
Q 006763 329 RKAVRAIGRCAIKLER 344 (632)
Q Consensus 329 ~~~i~aIg~la~k~~~ 344 (632)
.++--.|-++-..+|.
T Consensus 246 skasY~ilkLe~~hP~ 261 (821)
T COG5593 246 SKASYVILKLELLHPG 261 (821)
T ss_pred hhhhHHHHHHHhcCCc
Confidence 3443333333333333
No 304
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.93 E-value=2.3e+02 Score=31.61 Aligned_cols=85 Identities=16% Similarity=0.193 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHH
Q 006763 308 NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESII 387 (632)
Q Consensus 308 Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii 387 (632)
|+..++.||.. +...++-....++|..++..-.........+|++++...+..+..-+...+-.++-+.+-.+..++
T Consensus 7 kl~~lIeelT~---sg~~~~~p~~~k~lkkiv~~sdee~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~FR~lii 83 (661)
T KOG2374|consen 7 KLIGLIEELTK---SGAQEVDPRLLKALKKIVRYSDEEVRLSSQTLMELMRHNHSQVRYLTLQIIDELFMRSKLFRTLII 83 (661)
T ss_pred HHHHHHHHHhh---cCCcccChHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444555442 122333334455555555544445667788999999999999998888888888888888888888
Q ss_pred HHHHHhhc
Q 006763 388 ATLCESLD 395 (632)
Q Consensus 388 ~~L~~~l~ 395 (632)
..+-++|+
T Consensus 84 ~n~~efLe 91 (661)
T KOG2374|consen 84 ENLDEFLE 91 (661)
T ss_pred hCHHHHHH
Confidence 88777765
No 305
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=24.81 E-value=1.2e+02 Score=33.06 Aligned_cols=70 Identities=23% Similarity=0.246 Sum_probs=54.1
Q ss_pred HHHHHHHhhhCC-CChHHHHHHHHHHHHhhhhcccc---ccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 006763 81 YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (632)
Q Consensus 81 ~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~~~p~~---v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~ 150 (632)
.+..-+.+.|.. .+|.+---|+.=+....+.+|+. ++.-+-.+.+-++++..||.|..+|+.++..+.-+
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 445556666665 45888888999999999999974 33334557788899999999999999998877543
No 306
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=24.81 E-value=4.4e+02 Score=26.86 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHhc-CcccHHH
Q 006763 290 IYVKMEKLEIMIKLA-SDRNIDQ 311 (632)
Q Consensus 290 ~~Ik~~kL~lL~~L~-n~~Ni~~ 311 (632)
.+=++.+||.|.+|+ .+.|++-
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDl 160 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDL 160 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcce
Confidence 455677777777765 4555443
No 307
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=24.20 E-value=6e+02 Score=25.30 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHh
Q 006763 311 QVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (632)
Q Consensus 311 ~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k 341 (632)
.++++|..|++..+..+....++.+.++|..
T Consensus 3 ~~l~~L~~fi~~~~~~~~~~~~~~lvk~al~ 33 (213)
T PF14837_consen 3 NLLDELKSFIRGVRPCYSNKSVEDLVKCALS 33 (213)
T ss_pred hHHHHHHHHHhcCCcccccccHHHHHHHHHH
Confidence 4788888888887766655555566555554
No 308
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=24.01 E-value=6.5e+02 Score=24.20 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=32.1
Q ss_pred chhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhh
Q 006763 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI 111 (632)
Q Consensus 75 ~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~ 111 (632)
+++++..++..|.|....+-.-||-.|..|+.++...
T Consensus 1 ~~~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~ 37 (193)
T PF12612_consen 1 SPELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHS 37 (193)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3677888888899999999999999999999999843
No 309
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=23.89 E-value=2.3e+02 Score=25.50 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=31.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcc
Q 006763 335 IGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN 381 (632)
Q Consensus 335 Ig~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~ 381 (632)
|.+++..-+......++.|++=|..++.+|...++.+|+.++++-++
T Consensus 25 ia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~ 71 (122)
T cd03572 25 IAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNS 71 (122)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCH
Confidence 33344333345566777788888888888878888888888776553
No 310
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=23.61 E-value=1.4e+02 Score=28.06 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=59.8
Q ss_pred CChHHHhHHHHHhcCCC---chhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccc----ccccchHHHHHHHhc
Q 006763 58 PNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL----VEDRGFLESLKDLIS 130 (632)
Q Consensus 58 ~np~ir~lALr~L~~I~---~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~----v~~~~~~~~L~~lL~ 130 (632)
..+-+|+.|+=.++.+- ..+..+.+...+...+.+.+.--...|+.++.-+|...|+. +..+++.+.+..+..
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 45567777776666653 12344455566666665522224456777788888888875 334588899999888
Q ss_pred --CCChhHHHHHHHHHHHHH
Q 006763 131 --DNNPMVVANAVAALAEIE 148 (632)
Q Consensus 131 --D~d~~Vv~~Al~aL~eI~ 148 (632)
.++..+..+++-+|..-+
T Consensus 97 ~~~~~~~~~~~~lell~aAc 116 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAAC 116 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHH
Confidence 678888888887776654
No 311
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=23.33 E-value=2.5e+02 Score=26.84 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=57.2
Q ss_pred CcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCC--CChHHHH
Q 006763 22 NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVRK 99 (632)
Q Consensus 22 d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d--~~pyVRK 99 (632)
.-+.|.+.+-+ ..+...+|+... -|.+-..-.|+.-+.-|...|..-...+..+. .++|.. +++.||+
T Consensus 20 ~~eek~llW~~-R~~~~~~p~aL~----~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~a-----LeLL~~~f~d~~VR~ 89 (171)
T cd00872 20 TEEDKELLWKL-RHECRKKPQALP----KLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQA-----LELLDCNFPDEHVRE 89 (171)
T ss_pred CHHHHHHHHHH-HHHHhhCcHHHH----HHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHH-----HHHCCCcCCCHHHHH
Confidence 34577777776 444455576433 33444566677777777777776544333332 334443 6688999
Q ss_pred HHHHHHHHhhhhccccccccchHHHHHHHhc
Q 006763 100 TAAICVAKLYDINAELVEDRGFLESLKDLIS 130 (632)
Q Consensus 100 ~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~ 130 (632)
-|+-++-++ .++.+. .++..|.+.|+
T Consensus 90 yAV~~L~~~---sd~eL~--~yL~QLVQaLK 115 (171)
T cd00872 90 FAVRCLEKL---SDDELL--QYLLQLVQVLK 115 (171)
T ss_pred HHHHHHHhC---CHHHHH--HHHHHHHHHHH
Confidence 988877763 344443 37777777776
No 312
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=23.06 E-value=1.1e+03 Score=26.28 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=31.3
Q ss_pred HHHHHHhhc-CCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHh
Q 006763 444 TATVKLFLK-KPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (632)
Q Consensus 444 ta~~Kl~~~-~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL 489 (632)
.|.+=++++ .|+ +..++|+-+++.. +...|.++|+|+.....-|
T Consensus 296 ~A~A~v~l~~lP~-KLnPiIrpLMdSI-K~Een~~LQ~rsA~slA~L 340 (441)
T PF12054_consen 296 AASALVALGGLPK-KLNPIIRPLMDSI-KREENELLQQRSAESLARL 340 (441)
T ss_pred HHHHHHHhccCCC-CccHHHHHHHHHh-hccccHHHHHHHHHHHHHH
Confidence 333334444 465 5899999999974 4568999999998876644
No 313
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=23.03 E-value=9.4e+02 Score=25.69 Aligned_cols=119 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 006763 313 LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCE 392 (632)
Q Consensus 313 v~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~ 392 (632)
+.||..|+...+.++.++.-+ .-...+...++....-+.+..... .+-+...+..++...| .+...+..+.
T Consensus 18 l~elr~yl~~~eaeis~e~~~------kgl~~~l~~ii~~c~v~~k~~ekd-le~vlnsi~sLi~~~~--~e~~e~~v~a 88 (378)
T KOG2753|consen 18 LAELRAYLKKLEAEISEEASE------KGLEEDLLMIIEACDVLAKIPEKD-LECVLNSIVSLIKNAP--PEKVEEMVKA 88 (378)
T ss_pred HHHHHHHHhhcCcccchhhhc------cCHHHHHHHHHHHhHHhhcCCcch-HHHHHHHHHHHHHhCC--HHHhHHHHHH
Q ss_pred hhccCChhhHHHHHHHHHhcccCccCC-HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcC
Q 006763 393 SLDTLDEPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKK 453 (632)
Q Consensus 393 ~l~~i~~p~a~~~~iWiLGEy~~~i~~-~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~ 453 (632)
+.+.+ .-+..+..+. .-.+|..+.+.....++ +|.++.+++++++.++
T Consensus 89 ~~ekv------------a~q~n~~~~~l~L~vLsnLfn~~d~~~~-aR~~Vy~~lv~la~~~ 137 (378)
T KOG2753|consen 89 ICEKV------------AKQPNDKTASLRLQVLSNLFNGVDKPTP-ARYQVYMSLVTLAASC 137 (378)
T ss_pred HHHHH------------hcCccCCCcccHHHHHHHHHhccCCCch-HHHHHHHHHHHHHhhc
No 314
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.02 E-value=6.1e+02 Score=32.21 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHH----HHHHHhc
Q 006763 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLE----SLKDLIS 130 (632)
Q Consensus 77 ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~----~L~~lL~ 130 (632)
.+.=++...+.++..|..+-||+-|+..+.+++.-+........|.. .+..||.
T Consensus 993 ~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd 1050 (1610)
T KOG1848|consen 993 VLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLD 1050 (1610)
T ss_pred HHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhc
Confidence 34447888899999999999999999999999987766666544543 3445554
No 315
>PHA02962 hypothetical protein; Provisional
Probab=22.29 E-value=1.1e+03 Score=27.69 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=36.6
Q ss_pred HHHhcccCccCC---HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhh
Q 006763 408 WIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNA 469 (632)
Q Consensus 408 WiLGEy~~~i~~---~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~ 469 (632)
-.+.+|.-...+ -+++++.|+..|.-++. -.-||.+.+|= ..+..+.+++.-
T Consensus 380 npftDY~FtT~WfN~~~ELl~lfV~~ygFc~~--------~M~kLlFeYPL--~~es~~~~l~~m 434 (722)
T PHA02962 380 NPFNDYTFTTDWFNKNTELLKLYISFYFIDPT--------MMRKLLFEYPL--CEESTRIAIEEI 434 (722)
T ss_pred CcchheeecchhhcCChHHHHHHHHHhCCCHH--------HHHHHHhcCCC--CHHHHHHHHHHH
Confidence 344666655443 47899999998887774 44578888885 567788888763
No 316
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=21.97 E-value=1.8e+02 Score=28.69 Aligned_cols=6 Identities=0% Similarity=-0.058 Sum_probs=3.4
Q ss_pred ccccCC
Q 006763 620 AIVPAD 625 (632)
Q Consensus 620 ~~~~~~ 625 (632)
++-+||
T Consensus 196 SFTfGG 201 (205)
T PF12238_consen 196 SFTFGG 201 (205)
T ss_pred ceecCC
Confidence 555555
No 317
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=21.79 E-value=6.7e+02 Score=23.49 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=24.4
Q ss_pred hhhhcc--CchhHHHHHHHHHHHHHhhCccchh
Q 006763 246 LVTLLS--AEPEIQYVALRNINLIVQRRPTILA 276 (632)
Q Consensus 246 L~~Lls--~~~niryvaL~~l~~i~~~~p~~~~ 276 (632)
|..++. .+.++|.-+++.|..|..-+|..++
T Consensus 15 L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 15 LLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 345663 3589999999999999998887664
No 318
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.50 E-value=1.5e+03 Score=27.64 Aligned_cols=136 Identities=16% Similarity=0.242 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhhhhhH-HHHHHHHHHHHh---hhchhhHHHHHHHHHHHHhh--C--c-c----cHHHHHHHHHHhhccC
Q 006763 331 AVRAIGRCAIKLERAA-ERCISVLLELIK---IKVNYVVQEAIIVIKDIFRR--Y--P-N----TYESIIATLCESLDTL 397 (632)
Q Consensus 331 ~i~aIg~la~k~~~~~-~~~v~~Ll~ll~---~~~~~v~~e~i~~l~~ilr~--~--p-~----~~~~ii~~L~~~l~~i 397 (632)
.+..||.+|.-..... ......+..++. ....++++-+...+..|.+. | | + -..+++..+...+...
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~ 647 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTS 647 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccC
Confidence 3466777776443322 223333333333 33345665555555555553 3 2 1 1345666666556543
Q ss_pred ChhhHHHHHHHHHhcccCc--cCCHHH---HHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh
Q 006763 398 DEPEAKASMIWIIGEYAER--IDNADE---LLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN 468 (632)
Q Consensus 398 ~~p~a~~~~iWiLGEy~~~--i~~~~~---~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~ 468 (632)
.......-+.-++|.|++. +++-.+ .+...++.|...+..--.++|-+++|.+.+.-.+ . .+++.+..+
T Consensus 648 ~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~-~-~il~~~~d~ 721 (1014)
T KOG4524|consen 648 GMSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYIN-D-EILGHIADQ 721 (1014)
T ss_pred CCCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhcccc-c-hhhHHHHHH
Confidence 3333334455567788754 344334 3444556777666444457888999988765443 2 455555554
No 319
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=21.29 E-value=9.1e+02 Score=24.84 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHhcCcccHHHHHHHHH
Q 006763 290 IYVKMEKLEIMIKLASDRNIDQVLLEFK 317 (632)
Q Consensus 290 ~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~ 317 (632)
.|+|...|.++..|+..++ .++++-|+
T Consensus 110 E~LRLtsLGVIgaLvK~d~-~evi~fLl 136 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDD-PEVISFLL 136 (262)
T ss_dssp HHHHHHHHHHHHHHHTT---HHHHHHHH
T ss_pred chhhHhHHHHHHHHHcCCc-HHHHHHHH
Confidence 7889999999988886443 33444433
No 320
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.29 E-value=6.1e+02 Score=28.95 Aligned_cols=115 Identities=18% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHh--------hcCCCChHHHhHHHHHhcCC--CchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccc
Q 006763 45 ILAVNTFVK--------DSQDPNPLIRALAVRTMGCI--RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE 114 (632)
Q Consensus 45 lL~iNtl~k--------Dl~~~np~ir~lALr~L~~I--~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~ 114 (632)
.++|..+.. ++++....+..+|+-..+-| +..-=.+.+...+-..+.-.++.+||.--+|..-++-.+|+
T Consensus 595 vl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQ 674 (881)
T COG5110 595 VLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQ 674 (881)
T ss_pred HHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcc
Q ss_pred cccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHh
Q 006763 115 LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL 170 (632)
Q Consensus 115 ~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l 170 (632)
.- .++.|.+-..|.|..|..|++.++.-+...... ..+.+||+++
T Consensus 675 m~----vfDtL~r~shd~dl~v~~ntIfamGLiGAGT~N-------aRlaqlLrQl 719 (881)
T COG5110 675 MN----VFDTLERSSHDGDLNVIINTIFAMGLIGAGTLN-------ARLAQLLRQL 719 (881)
T ss_pred hH----HHHHHHHhccccchhHHHHHHHHhhccccCcch-------HHHHHHHHHH
No 321
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=21.28 E-value=4.2e+02 Score=23.97 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 006763 420 ADELLESFLESFPEEPAQVQLQLLTAT 446 (632)
Q Consensus 420 ~~~~l~~l~~~f~~e~~~vq~~iLta~ 446 (632)
+.+.++.+-+++...++.|++..|+.+
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lL 61 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLL 61 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455555555666666666666554433
No 322
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=21.17 E-value=1e+03 Score=25.38 Aligned_cols=111 Identities=19% Similarity=0.293 Sum_probs=70.6
Q ss_pred CchhHHHHHHHHHHHHHhhCccchhc----ccceeE-----eccCCchhHHHHHHHHHHHhc-CcccHHHHHHHHHHhhh
Q 006763 252 AEPEIQYVALRNINLIVQRRPTILAH----EIKVFF-----CKYNDPIYVKMEKLEIMIKLA-SDRNIDQVLLEFKEYAT 321 (632)
Q Consensus 252 ~~~niryvaL~~l~~i~~~~p~~~~~----~~~~f~-----~l~~dd~~Ik~~kL~lL~~L~-n~~Ni~~Iv~EL~~yl~ 321 (632)
..-++.-=|+.++..+..+++.+++. ++..|| ++.++..-+|+.+|.+|..+. +..|... +..|+.
T Consensus 176 ~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~v----m~~yi~ 251 (335)
T PF08569_consen 176 PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNV----MTRYIS 251 (335)
T ss_dssp SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHH----HHHHTT
T ss_pred CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHH----HHHHHC
Confidence 45678888999999999888876543 333332 344555556777777776643 5555433 122322
Q ss_pred hcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHH
Q 006763 322 EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLC 391 (632)
Q Consensus 322 ~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~ 391 (632)
....+..++.+|+.+...|.-|+.++++-.+. +|+.-..+...|.
T Consensus 252 ------------------------~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA-Np~K~~~I~~iL~ 296 (335)
T PF08569_consen 252 ------------------------SPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA-NPNKPPPIVDILI 296 (335)
T ss_dssp -------------------------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--SS-BHHHHHHHH
T ss_pred ------------------------CHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh-CCCCChHHHHHHH
Confidence 23567889999999999999999999986664 5877666666554
No 323
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=21.02 E-value=2.1e+02 Score=26.81 Aligned_cols=64 Identities=25% Similarity=0.346 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhc---CCCChHHHhhHHHHHHHhcCCHHHHHhh
Q 006763 436 AQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATV---ETDNPDLRDRAYIYWRLLSTDPEAAKDV 499 (632)
Q Consensus 436 ~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~---~s~~~dvrdRA~~y~~LL~~~~~~~~~i 499 (632)
.++...++.+++++..|-.+...++++.++.+|+.. ......-.+|..-++++++.=.+..|.+
T Consensus 35 ~~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKsl 101 (153)
T PF08146_consen 35 DEVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSL 101 (153)
T ss_pred HHHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHH
Confidence 345566788888888887766689999999999863 1224557889999999887543444433
No 324
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=20.87 E-value=1.4e+03 Score=26.75 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=26.4
Q ss_pred HHHHHHhhhCCCC-hHHHHHHHHHHHHhhhhccc
Q 006763 82 LCDPLQRCLKDDD-PYVRKTAAICVAKLYDINAE 114 (632)
Q Consensus 82 l~~~v~~~L~d~~-pyVRK~A~~al~kl~~~~p~ 114 (632)
..+.+.+++.+++ -.|+-+..-|+-.++..+|.
T Consensus 96 ~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~ 129 (678)
T KOG1293|consen 96 ELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKY 129 (678)
T ss_pred hHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccc
Confidence 3477899999999 67888888888888888764
No 325
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=20.76 E-value=4.2e+02 Score=26.55 Aligned_cols=105 Identities=17% Similarity=0.293 Sum_probs=66.7
Q ss_pred CcccHHHHHHHHHHh--hhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCccc
Q 006763 305 SDRNIDQVLLEFKEY--ATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT 382 (632)
Q Consensus 305 n~~Ni~~Iv~EL~~y--l~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~ 382 (632)
+..++-.+|+.+.+. -+..-.+|...+++.+...+.. ..-.+.+.|++++- +|.++.... +..++-+||..
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~---kDL~~Y~~LLDvFP-Kg~fvp~n~---fQ~~F~hyp~Q 118 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVE---KDLEVYKALLDVFP-KGKFVPRNF---FQAEFMHYPRQ 118 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCc---ccHHHHHHHHHhCC-CCCcccccH---HHHHhccCcHH
Confidence 334445555555543 2335688988888888776643 22356678888877 466776544 34456678877
Q ss_pred HHHHHHHHHHhhc--cCChhhHHHHHHHHHhcccCc
Q 006763 383 YESIIATLCESLD--TLDEPEAKASMIWIIGEYAER 416 (632)
Q Consensus 383 ~~~ii~~L~~~l~--~i~~p~a~~~~iWiLGEy~~~ 416 (632)
++-++..|.+.-+ -+.+.+....++-|.|+++.-
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 7666665544222 244567788889999998763
No 326
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=20.37 E-value=5.6e+02 Score=29.94 Aligned_cols=96 Identities=22% Similarity=0.156 Sum_probs=66.4
Q ss_pred HHHHHhhcCCCChHHHhHHHHHhc--CCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHH
Q 006763 48 VNTFVKDSQDPNPLIRALAVRTMG--CIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (632)
Q Consensus 48 iNtl~kDl~~~np~ir~lALr~L~--~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L 125 (632)
..++.|=+-+..+++++=||-.++ +.++.+=++...--+..-+.+.+..+|-.|++++.-.|.-... ++....|
T Consensus 417 L~qldkylys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~----e~V~~lL 492 (878)
T KOG2005|consen 417 LEQLDKYLYSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQR----EEVLELL 492 (878)
T ss_pred HHHHHHHhhcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCch----HHHHHHH
Confidence 457788888888888888887655 3455566666667778888889999999999999988853221 1244577
Q ss_pred HHHhcCCChh--HHHHHHHHHHHH
Q 006763 126 KDLISDNNPM--VVANAVAALAEI 147 (632)
Q Consensus 126 ~~lL~D~d~~--Vv~~Al~aL~eI 147 (632)
..++.|.++. |++-|-.+|.-|
T Consensus 493 ~Pi~~d~~~~~ev~~~aslsLG~I 516 (878)
T KOG2005|consen 493 SPIMFDTKSPMEVVAFASLSLGMI 516 (878)
T ss_pred hHHhcCCCCchhHHHHHHhhccee
Confidence 8888888766 444333333333
No 327
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=20.05 E-value=7.5e+02 Score=23.42 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=64.8
Q ss_pred HHHHHHhcCCC------hhHHHHHHHHHHHHHhcCCCCchhc-cHHHHHHHHHHhhcc--ChhhHHHHHHHHhccccCCH
Q 006763 123 ESLKDLISDNN------PMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNEC--TEWGQVFILDALSRYKAADA 193 (632)
Q Consensus 123 ~~L~~lL~D~d------~~Vv~~Al~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~l~~~--~ew~qi~lL~lL~~y~~~~~ 193 (632)
..|.+++.+.. ...++.++.++.++.+++ .--|+. ....+.|+...++.. +.=.+-.-|.+|......++
T Consensus 14 ~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~ 92 (160)
T PF11841_consen 14 TLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSP 92 (160)
T ss_pred HHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCH
Confidence 44555555544 367788999999999875 223653 455567777776532 23333345566655555444
Q ss_pred HHHHH-----HHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 006763 194 REAEN-----IVERVTPRLQHANCAVVLSAVKMILQQM 226 (632)
Q Consensus 194 ~~~~~-----il~~v~~~L~~~n~aVv~eaik~i~~~~ 226 (632)
..... -++.+...|+..|.-+...|+.++..++
T Consensus 93 ~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 93 KLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 32222 2456677888899999999988887764
Done!