Query 006763
Match_columns 632
No_of_seqs 281 out of 1441
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 08:18:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_B AP-2 complex subunit be 100.0 1.2E-91 4.2E-96 798.1 51.3 547 1-548 41-589 (591)
2 2vgl_A Adaptor protein complex 100.0 5E-84 1.7E-88 737.9 37.8 501 1-510 66-608 (621)
3 1w63_A Adapter-related protein 100.0 7.8E-78 2.7E-82 687.7 36.3 505 1-520 62-605 (618)
4 3tjz_B Coatomer subunit gamma; 100.0 5.1E-51 1.7E-55 430.2 13.2 289 1-306 55-354 (355)
5 1b3u_A Protein (protein phosph 99.8 1.7E-16 5.7E-21 177.8 31.9 479 8-490 86-586 (588)
6 1b3u_A Protein (protein phosph 99.7 3.6E-15 1.2E-19 166.9 27.8 432 11-449 128-585 (588)
7 4fdd_A Transportin-1; heat rep 99.6 9.2E-14 3.1E-18 163.8 33.1 481 9-495 215-789 (852)
8 4fdd_A Transportin-1; heat rep 99.6 1.3E-13 4.4E-18 162.6 33.4 413 17-468 21-491 (852)
9 2vgl_B AP-2 complex subunit be 99.6 1.2E-14 4.2E-19 164.7 18.5 388 86-491 54-455 (591)
10 1w63_A Adapter-related protein 99.6 3E-14 1E-18 162.4 20.9 405 48-468 36-467 (618)
11 1u6g_C TIP120 protein, CAND1; 99.6 5.9E-13 2E-17 163.0 32.3 480 8-489 5-596 (1230)
12 2jdq_A Importin alpha-1 subuni 99.5 2.8E-12 9.6E-17 138.7 30.7 329 11-341 22-391 (450)
13 2bpt_A Importin beta-1 subunit 99.5 2.6E-11 8.8E-16 142.1 41.1 438 11-456 6-534 (861)
14 2jdq_A Importin alpha-1 subuni 99.5 5.2E-13 1.8E-17 144.5 23.5 331 46-378 20-391 (450)
15 1wa5_B Importin alpha subunit; 99.5 2E-12 6.8E-17 144.1 28.2 378 7-416 85-511 (530)
16 4b8j_A Importin subunit alpha- 99.5 7.5E-12 2.6E-16 139.2 31.0 340 9-379 74-445 (528)
17 2bpt_A Importin beta-1 subunit 99.5 1.1E-10 3.9E-15 136.6 42.1 479 7-488 132-708 (861)
18 1qgr_A Protein (importin beta 99.5 1.8E-10 6.3E-15 135.1 39.1 446 6-455 125-726 (876)
19 2z6g_A B-catenin; FULL-length, 99.5 6.2E-12 2.1E-16 147.0 26.3 439 48-494 117-625 (780)
20 1qgr_A Protein (importin beta 99.5 3.2E-11 1.1E-15 141.5 32.4 471 15-489 223-869 (876)
21 1u6g_C TIP120 protein, CAND1; 99.5 2.7E-11 9.1E-16 148.3 32.5 441 9-455 48-602 (1230)
22 1wa5_B Importin alpha subunit; 99.5 1E-11 3.6E-16 138.3 26.2 331 82-414 88-456 (530)
23 2z6g_A B-catenin; FULL-length, 99.4 3.4E-11 1.2E-15 140.7 31.3 469 11-491 117-663 (780)
24 1jdh_A Beta-catenin; beta-cate 99.4 1.4E-10 4.8E-15 128.2 32.6 436 41-487 12-526 (529)
25 2z6h_A Catenin beta-1, beta-ca 99.4 1.1E-10 3.8E-15 133.4 32.2 438 46-492 14-528 (644)
26 1ibr_B P95, importin beta-1 su 99.4 3.6E-11 1.2E-15 130.2 25.4 360 12-416 4-438 (462)
27 4b8j_A Importin subunit alpha- 99.4 1.1E-10 3.8E-15 129.7 28.7 328 83-413 76-441 (528)
28 3now_A UNC-45 protein, SD10334 99.3 2.4E-10 8.1E-15 132.2 29.2 368 10-380 291-740 (810)
29 3ul1_B Importin subunit alpha- 99.3 5.3E-09 1.8E-13 116.1 38.8 339 8-377 56-430 (510)
30 1oyz_A Hypothetical protein YI 99.3 1.9E-11 6.6E-16 124.3 17.1 251 47-372 24-277 (280)
31 1jdh_A Beta-catenin; beta-cate 99.3 4.4E-10 1.5E-14 124.2 27.7 434 10-449 18-528 (529)
32 3now_A UNC-45 protein, SD10334 99.3 3.9E-09 1.3E-13 122.1 34.3 401 11-415 248-737 (810)
33 2vgl_A Adaptor protein complex 99.3 2.3E-09 7.9E-14 121.9 30.2 389 24-432 58-488 (621)
34 2z6h_A Catenin beta-1, beta-ca 99.3 6.8E-09 2.3E-13 118.5 33.9 437 10-453 15-529 (644)
35 3tpo_A Importin subunit alpha- 99.2 1.9E-08 6.5E-13 112.1 33.7 330 8-339 75-448 (529)
36 3ul1_B Importin subunit alpha- 99.2 3.1E-09 1.1E-13 118.0 26.3 370 83-486 59-473 (510)
37 1oyz_A Hypothetical protein YI 99.2 3.7E-09 1.3E-13 107.4 23.3 193 11-225 25-219 (280)
38 3tpo_A Importin subunit alpha- 99.1 1.9E-08 6.5E-13 112.1 29.9 371 82-486 77-492 (529)
39 3ltm_A Alpha-REP4; protein eng 99.1 3.8E-09 1.3E-13 102.5 17.1 185 47-271 20-205 (211)
40 3ltj_A Alpharep-4; protein eng 99.0 1.3E-08 4.3E-13 98.0 17.9 181 47-267 15-196 (201)
41 4hxt_A De novo protein OR329; 99.0 4.2E-08 1.4E-12 96.9 21.4 225 48-274 4-246 (252)
42 3ltj_A Alpharep-4; protein eng 99.0 2.2E-08 7.4E-13 96.4 18.7 184 8-225 13-196 (201)
43 3ltm_A Alpha-REP4; protein eng 99.0 2.5E-08 8.4E-13 96.8 18.8 184 8-225 18-201 (211)
44 4db8_A Armadillo-repeat protei 98.9 1.9E-08 6.5E-13 100.0 15.8 220 6-225 9-249 (252)
45 4hxt_A De novo protein OR329; 98.9 8.8E-08 3E-12 94.6 20.0 218 10-227 3-241 (252)
46 1ibr_B P95, importin beta-1 su 98.9 6.6E-08 2.2E-12 104.3 20.8 352 13-378 39-438 (462)
47 4db8_A Armadillo-repeat protei 98.8 5.5E-08 1.9E-12 96.6 14.6 218 48-267 14-249 (252)
48 3tjz_B Coatomer subunit gamma; 98.8 2.1E-07 7.3E-12 97.8 18.1 267 51-370 73-346 (355)
49 4db6_A Armadillo repeat protei 98.7 2.8E-07 9.5E-12 88.9 15.4 148 4-151 7-169 (210)
50 1wa5_C Importin alpha RE-expor 98.7 5.4E-05 1.9E-09 90.2 38.4 409 13-451 9-525 (960)
51 1xm9_A Plakophilin 1; armadill 98.7 1.8E-06 6.3E-11 94.3 22.7 166 83-251 4-195 (457)
52 2qk2_A LP04448P; mini spindles 98.6 9.1E-07 3.1E-11 87.9 16.6 200 78-280 12-217 (242)
53 2x19_B Importin-13; nuclear tr 98.5 4.6E-05 1.6E-09 90.6 31.5 444 12-468 27-576 (963)
54 4db6_A Armadillo repeat protei 98.5 3.4E-06 1.2E-10 81.1 16.0 178 48-225 14-207 (210)
55 3l6x_A Catenin delta-1; cateni 98.4 5.7E-05 2E-09 84.5 27.0 316 83-413 50-430 (584)
56 4ady_A RPN2, 26S proteasome re 98.4 0.00015 5.2E-09 84.4 31.1 284 48-359 394-699 (963)
57 2qk1_A Protein STU2; STU2P, XM 98.4 2.8E-06 9.6E-11 85.2 14.6 209 85-300 20-245 (249)
58 1te4_A Conserved protein MTH18 98.3 2.1E-07 7.3E-12 83.5 3.7 117 11-146 14-130 (131)
59 3nmz_A APC variant protein; pr 98.3 5.3E-05 1.8E-09 82.6 23.2 332 48-384 34-457 (458)
60 2x1g_F Cadmus; transport prote 98.3 5.7E-05 1.9E-09 90.0 24.7 425 14-454 12-575 (971)
61 1te4_A Conserved protein MTH18 98.3 4.6E-07 1.6E-11 81.3 5.0 118 47-187 13-130 (131)
62 3b2a_A TON_1937, putative unch 98.3 7.5E-06 2.6E-10 79.5 13.6 190 121-318 34-231 (265)
63 1xm9_A Plakophilin 1; armadill 98.3 7.3E-05 2.5E-09 81.5 23.2 294 9-306 44-450 (457)
64 3opb_A SWI5-dependent HO expre 98.2 8.4E-05 2.9E-09 84.9 22.9 92 59-151 307-408 (778)
65 2qk2_A LP04448P; mini spindles 98.2 3.1E-05 1.1E-09 76.6 16.6 174 50-229 19-207 (242)
66 3opb_A SWI5-dependent HO expre 98.2 0.0017 5.7E-08 74.3 31.3 457 20-490 144-727 (778)
67 1wa5_C Importin alpha RE-expor 98.2 0.0005 1.7E-08 81.9 28.5 243 23-271 375-672 (960)
68 2db0_A 253AA long hypothetical 98.1 0.00017 5.8E-09 67.4 18.2 210 120-340 32-246 (253)
69 3l6x_A Catenin delta-1; cateni 98.1 0.00041 1.4E-08 77.6 24.8 303 10-315 91-486 (584)
70 2qk1_A Protein STU2; STU2P, XM 98.0 0.00017 5.9E-09 72.1 17.0 182 50-231 20-224 (249)
71 3u0r_A Apoptosis inhibitor 5; 97.9 0.024 8.4E-07 60.7 32.9 134 11-150 31-164 (507)
72 2x19_B Importin-13; nuclear tr 97.9 0.055 1.9E-06 63.9 40.2 129 56-189 459-598 (963)
73 3nmw_A APC variant protein; AR 97.9 0.00039 1.3E-08 73.2 19.0 217 58-276 96-341 (354)
74 3m1i_C Exportin-1; heat repeat 97.9 0.0014 4.8E-08 78.8 26.3 432 12-454 19-572 (1049)
75 1xqr_A HSPBP1 protein; armadil 97.9 0.00036 1.2E-08 71.6 18.0 187 5-192 24-240 (296)
76 4ady_A RPN2, 26S proteasome re 97.9 0.015 5.2E-07 67.8 32.4 124 363-491 593-719 (963)
77 3nmw_A APC variant protein; AR 97.8 0.00073 2.5E-08 71.1 19.1 218 133-384 97-341 (354)
78 3nmz_A APC variant protein; pr 97.8 0.00057 1.9E-08 74.4 17.6 215 58-274 212-455 (458)
79 2db0_A 253AA long hypothetical 97.7 0.0057 2E-07 57.3 20.7 196 285-485 41-240 (253)
80 3b2a_A TON_1937, putative unch 97.7 0.0023 7.8E-08 62.3 18.6 178 309-490 73-260 (265)
81 1xqr_A HSPBP1 protein; armadil 97.7 0.00029 9.8E-09 72.3 13.1 141 10-150 82-239 (296)
82 2x1g_F Cadmus; transport prote 97.7 0.016 5.6E-07 68.7 29.9 421 96-526 436-942 (971)
83 3ibv_A Exportin-T; karyopherin 97.6 0.077 2.6E-06 63.1 34.9 426 20-455 19-570 (980)
84 3a6p_A Exportin-5; exportin-5, 97.6 0.15 5.2E-06 62.0 36.6 139 5-149 4-162 (1204)
85 4ffb_C Protein STU2; tubulin f 97.5 0.00062 2.1E-08 68.8 12.6 192 1-229 1-214 (278)
86 4ffb_C Protein STU2; tubulin f 97.3 0.0042 1.4E-07 62.6 15.6 183 86-269 14-212 (278)
87 3ibv_A Exportin-T; karyopherin 97.3 0.24 8.2E-06 58.9 33.0 415 58-487 20-562 (980)
88 3grl_A General vesicular trans 97.3 0.14 4.9E-06 57.1 28.4 133 17-151 30-197 (651)
89 3m1i_C Exportin-1; heat repeat 97.2 0.29 1E-05 58.5 33.2 159 296-455 436-622 (1049)
90 3grl_A General vesicular trans 97.2 0.14 4.9E-06 57.1 27.1 301 87-390 28-407 (651)
91 4hat_C Exportin-1; heat repeat 97.2 0.5 1.7E-05 56.4 33.6 107 42-150 447-570 (1023)
92 2iw3_A Elongation factor 3A; a 96.3 0.27 9.1E-06 58.0 22.1 219 47-270 96-325 (986)
93 3gjx_A Exportin-1; transport, 96.2 1.2 4.2E-05 53.2 27.4 69 82-152 207-278 (1073)
94 3gjx_A Exportin-1; transport, 96.2 0.17 5.9E-06 60.4 19.9 141 47-189 478-643 (1073)
95 3gs3_A Symplekin, LD45768P; he 96.2 0.75 2.6E-05 45.7 21.5 84 62-147 31-117 (257)
96 3o2t_A Symplekin; heat repeat, 96.0 0.37 1.3E-05 50.7 19.3 123 62-186 41-179 (386)
97 1ho8_A Vacuolar ATP synthase s 95.8 1.9 6.6E-05 46.3 24.2 320 125-451 82-476 (480)
98 3l9t_A Putative uncharacterize 95.6 0.34 1.2E-05 47.3 15.8 166 22-201 50-218 (240)
99 3u0r_A Apoptosis inhibitor 5; 95.5 0.56 1.9E-05 50.4 18.4 211 251-468 39-268 (507)
100 2iw3_A Elongation factor 3A; a 95.5 0.87 3E-05 53.7 21.8 250 72-338 45-322 (986)
101 2of3_A ZYG-9; multifunctional 95.5 0.22 7.5E-06 49.8 14.4 182 79-273 44-240 (266)
102 4hat_C Exportin-1; heat repeat 95.3 6.7 0.00023 46.7 32.8 362 80-456 193-623 (1023)
103 2of3_A ZYG-9; multifunctional 94.5 0.32 1.1E-05 48.6 12.4 129 20-153 98-240 (266)
104 1lrv_A LRV, leucine-rich repea 94.4 0.071 2.4E-06 52.7 7.4 183 55-336 59-242 (244)
105 3tt9_A Plakophilin-2; cell adh 93.7 4 0.00014 39.7 18.3 50 291-340 25-81 (233)
106 3tt9_A Plakophilin-2; cell adh 93.6 0.19 6.3E-06 49.4 8.5 105 46-150 8-125 (233)
107 3l9t_A Putative uncharacterize 92.9 0.34 1.2E-05 47.3 8.9 137 8-153 70-211 (240)
108 3oc3_A Helicase MOT1, MOT1; re 92.7 0.37 1.3E-05 52.7 9.6 230 16-265 181-432 (800)
109 4gmo_A Putative uncharacterize 92.3 0.69 2.4E-05 52.6 12.1 65 86-151 39-107 (684)
110 1lsh_A Lipovitellin (LV-1N, LV 92.3 0.24 8.2E-06 59.4 8.6 122 21-147 407-541 (1056)
111 3a6p_A Exportin-5; exportin-5, 92.3 25 0.00085 42.5 27.4 299 94-394 220-634 (1204)
112 3o2t_A Symplekin; heat repeat, 91.3 4 0.00014 42.8 15.5 112 37-148 54-182 (386)
113 3dad_A FH1/FH2 domain-containi 88.4 5.7 0.0002 40.7 13.4 82 88-171 125-212 (339)
114 3gs3_A Symplekin, LD45768P; he 88.2 8.3 0.00028 38.1 14.2 100 10-109 54-172 (257)
115 4gmo_A Putative uncharacterize 85.5 1.4 4.9E-05 50.0 7.9 146 51-196 39-220 (684)
116 1lsh_A Lipovitellin (LV-1N, LV 85.3 18 0.0006 43.2 17.6 164 309-489 389-572 (1056)
117 3dad_A FH1/FH2 domain-containi 82.5 29 0.00098 35.5 15.2 55 433-490 268-335 (339)
118 1lrv_A LRV, leucine-rich repea 79.7 2.5 8.4E-05 41.6 6.0 90 16-144 129-218 (244)
119 3ldz_A STAM-1, signal transduc 78.8 19 0.00064 31.9 11.1 86 24-109 20-113 (140)
120 1t06_A Hypothetical protein; s 78.4 3.7 0.00013 40.0 6.8 72 55-128 117-196 (235)
121 1x5b_A Signal transducing adap 77.9 16 0.00055 33.3 10.6 98 13-110 18-125 (163)
122 3zyq_A Hepatocyte growth facto 77.2 18 0.00062 34.8 11.3 99 8-109 7-117 (226)
123 2b6c_A Hypothetical protein EF 75.2 4 0.00014 39.2 6.0 135 14-159 60-198 (220)
124 2b6c_A Hypothetical protein EF 74.5 14 0.00048 35.3 9.7 82 57-144 66-148 (220)
125 3jxy_A Alkylpurine DNA glycosy 73.0 4 0.00014 39.6 5.4 137 13-159 65-205 (232)
126 1vsy_5 Proteasome activator BL 71.5 3.7 0.00013 48.7 5.6 98 14-113 765-877 (997)
127 3oc3_A Helicase MOT1, MOT1; re 71.4 19 0.00066 39.6 10.5 127 19-146 273-401 (800)
128 2jak_A Serine/threonine-protei 69.1 50 0.0017 34.5 13.0 137 350-487 217-363 (392)
129 3fga_B Serine/threonine-protei 68.2 1.1E+02 0.0039 31.9 15.5 135 351-487 173-318 (403)
130 3jxy_A Alkylpurine DNA glycosy 67.8 19 0.00064 34.7 9.0 82 56-145 71-156 (232)
131 3g2s_A C-terminal fragment of 67.4 50 0.0017 29.5 11.1 98 17-114 19-130 (149)
132 3s4w_B Protein FACD2, fanconi 65.5 1.2E+02 0.0041 36.8 16.7 314 67-406 146-499 (1323)
133 1x5b_A Signal transducing adap 63.7 20 0.00069 32.6 7.8 53 99-154 33-85 (163)
134 2npp_B PP2A, B subunit, serine 63.6 1E+02 0.0035 32.8 14.3 150 351-501 206-371 (449)
135 1upk_A MO25 protein; transfera 61.1 1.5E+02 0.0051 30.3 25.2 106 199-336 210-331 (341)
136 1mhq_A ADP-ribosylation factor 58.0 65 0.0022 28.7 10.0 82 29-110 21-116 (148)
137 1dvp_A HRS, hepatocyte growth 56.7 70 0.0024 30.4 10.7 76 29-107 25-112 (220)
138 1juq_A ADP-ribosylation factor 54.9 64 0.0022 29.5 9.6 98 16-113 20-131 (171)
139 1juq_A ADP-ribosylation factor 54.2 34 0.0012 31.3 7.6 67 84-153 16-82 (171)
140 3g2s_A C-terminal fragment of 53.2 1.2E+02 0.0042 26.9 11.4 75 249-346 57-132 (149)
141 2vso_E Eukaryotic initiation f 52.2 1.8E+02 0.0062 28.6 14.5 69 288-357 32-104 (284)
142 3ldz_A STAM-1, signal transduc 51.3 45 0.0015 29.4 7.7 55 99-156 23-77 (140)
143 1vsy_4 Proteasome activator BL 47.4 3.7E+02 0.013 30.7 24.1 72 76-148 334-411 (799)
144 3rk6_A Polyadenylate-binding p 45.0 2.1E+02 0.0073 27.3 14.8 68 289-356 16-86 (234)
145 1ho8_A Vacuolar ATP synthase s 44.3 3.2E+02 0.011 29.1 25.4 300 63-384 79-441 (480)
146 1elk_A Target of MYB1; superhe 44.0 1.6E+02 0.0056 26.2 10.4 107 4-110 10-130 (157)
147 1elk_A Target of MYB1; superhe 40.4 92 0.0031 27.9 8.1 68 84-154 19-87 (157)
148 3tj1_A RNA polymerase I-specif 40.2 3.7E+02 0.013 29.9 14.3 122 306-431 131-259 (649)
149 1upk_A MO25 protein; transfera 39.0 3.3E+02 0.011 27.7 17.8 112 252-392 176-297 (341)
150 1w9c_A CRM1 protein, exportin 37.7 1.1E+02 0.0039 30.8 9.0 76 403-490 169-245 (321)
151 2fv2_A RCD1 required for cell 37.0 2.3E+02 0.0079 27.7 10.7 27 290-317 116-142 (268)
152 1t06_A Hypothetical protein; s 36.1 1.6E+02 0.0056 28.0 9.7 76 285-360 117-200 (235)
153 4flb_A Regulation of nuclear P 36.0 1.5E+02 0.0053 25.3 8.7 49 329-377 21-69 (132)
154 1hu3_A EIF4GII; heat repeat, t 34.2 3.3E+02 0.011 26.3 14.5 49 404-452 147-199 (260)
155 1vdy_A Hypothetical protein (R 32.4 1.2E+02 0.0042 26.7 7.3 68 168-236 17-86 (140)
156 3zyq_A Hepatocyte growth facto 32.2 3.3E+02 0.011 25.7 11.1 70 249-345 54-123 (226)
157 1vsy_5 Proteasome activator BL 31.0 59 0.002 38.4 6.5 97 34-130 831-944 (997)
158 1mhq_A ADP-ribosylation factor 29.4 2.9E+02 0.01 24.3 13.2 75 249-346 47-122 (148)
159 3d9j_A RNA-binding protein 16; 29.2 2.9E+02 0.0099 24.2 9.6 35 327-361 21-55 (145)
160 3s51_A Protein FACI, fanconi a 24.6 3.7E+02 0.013 32.5 11.5 242 32-277 349-621 (1308)
161 3qml_C Protein SLS1, nucleotid 23.7 4E+02 0.014 26.7 10.0 25 93-117 82-106 (315)
162 1z5h_A Tricorn protease intera 23.4 6.9E+02 0.024 28.2 13.6 43 289-336 618-660 (780)
163 2qc7_A ERP31, ERP28, endoplasm 22.5 1.8E+02 0.0062 27.8 7.3 60 317-377 135-198 (240)
164 1h2v_C 80 kDa nuclear CAP bind 21.9 7.1E+02 0.024 28.2 13.0 73 298-371 14-88 (771)
165 1dvp_A HRS, hepatocyte growth 21.8 2.2E+02 0.0075 26.8 7.6 51 99-151 23-73 (220)
166 4e9m_A Nucleotide-binding olig 21.7 1E+02 0.0034 27.3 4.5 72 298-384 35-108 (144)
167 4fu3_A Regulation of nuclear P 20.1 1.2E+02 0.0042 26.0 5.0 32 330-361 21-52 (135)
No 1
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=1.2e-91 Score=798.10 Aligned_cols=547 Identities=73% Similarity=1.165 Sum_probs=515.4
Q ss_pred CCCCCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHH
Q 006763 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (632)
Q Consensus 1 mtlG~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~ 80 (632)
|++|+|++++|++++++++++|+++||+||+|++.+++.+||.+++++|+|+||++|+||.+|++|||+||+++.+++.+
T Consensus 41 ~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~ 120 (591)
T 2vgl_B 41 MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITE 120 (591)
T ss_dssp HHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHH
T ss_pred HHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCC-chhcc
Q 006763 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEIT 159 (632)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~-~~~l~ 159 (632)
++.+.|++++.|++|||||+|+.|+.++++.+|+.+++.+|++.+..+|.|+|++|+.+|+.+|.+|+..++.. .+.+.
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 99999999999999999999999999999999999987689999999999999999999999999999887755 46777
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhcc-CChHHHHHH
Q 006763 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELI-TSTDVVRNL 238 (632)
Q Consensus 160 ~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i-~~~~~~~~~ 238 (632)
+..+.+|++.+.+++||+|+++|+++++|.|.++++...+++.+.++++|.|++|+++|+++++++.+.+ .+++.++.+
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~ 280 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML 280 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 8889999999999999999999999999999999899999999999999999999999999999876544 355667777
Q ss_pred HHhcccchhhhccCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 006763 239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE 318 (632)
Q Consensus 239 ~~~~~~~L~~Lls~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~ 318 (632)
..++.++|++++++++|+||++|++|..+++.+|+.+.+|++.|+|+.+||.+||++|+++|+.|++++|++.|++||.+
T Consensus 281 ~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~ 360 (591)
T 2vgl_B 281 LKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKE 360 (591)
T ss_dssp HHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHH
Confidence 77888888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHHhhccCC
Q 006763 319 YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD 398 (632)
Q Consensus 319 yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~ 398 (632)
|+++.|.+|+++++++||.||.+|++..+||+++|+++++..++++.++++.+++++++++|+.+++++..|++.++++.
T Consensus 361 ~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~ 440 (591)
T 2vgl_B 361 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLD 440 (591)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCC
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcccCccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHH
Q 006763 399 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 478 (632)
Q Consensus 399 ~p~a~~~~iWiLGEy~~~i~~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dv 478 (632)
+|+++++++|++||||+.+++++++++.++++|.++++.||.++|||++|++.+.|++ .+++++++|+.++.++.|+||
T Consensus 441 ~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~~d~~d~ev 519 (591)
T 2vgl_B 441 EPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDL 519 (591)
T ss_dssp SHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHHHHHTTCCCHHH
T ss_pred CHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhcCCChHH
Confidence 9999999999999999999999999999999999999999999999999999999975 678999999998777899999
Q ss_pred HhhHHHHHHHhcCCHHHHHhhhccCCCCCCCCCCcCCHHHHHHHHHhcCccccccccChhhhhccccccC
Q 006763 479 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTA 548 (632)
Q Consensus 479 rdRA~~y~~LL~~~~~~~~~ivl~~~p~~~~~~~~~~~~~l~~l~~~~~tls~vy~kp~~~~~~~~~~~~ 548 (632)
||||++||+||+.+++.++++++++||+++..++..+++++++++.+|||+|++|+||++.|+++.+...
T Consensus 520 rdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~~~~ 589 (591)
T 2vgl_B 520 RDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGSHGIH 589 (591)
T ss_dssp HHHHHHHHTTTTTCTTHHHHHHTSCCCCCCSCSSCCCHHHHHHHHTTTTSSHHHHTSCGGGCC-------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHcCCCCCCCCCccccCHHHHHHHHHHhCcchhhhcCCHHHHcCCccccc
Confidence 9999999999999888999999999999998888899999999999999999999999999998776543
No 2
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=5e-84 Score=737.87 Aligned_cols=501 Identities=20% Similarity=0.301 Sum_probs=441.5
Q ss_pred CCCCCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHH
Q 006763 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (632)
Q Consensus 1 mtlG~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~ 80 (632)
|++|+|++|+|++|+++++|+|+++||+||||++.|++.+||+++|+||+|+||++|+||++||+|||+||+|++++|++
T Consensus 66 ~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~ 145 (621)
T 2vgl_A 66 FLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAE 145 (621)
T ss_dssp HHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh--CCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhc
Q 006763 81 YLCDPLQRCL--KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (632)
Q Consensus 81 ~l~~~v~~~L--~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l 158 (632)
++.++|++++ .|++|||||+|++|++|+|+.+|+.++..+|.+.+.++|+|+||+|+.+|+.++++|+.+++..+..+
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~ 225 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTS 225 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHH
Confidence 9999999999 99999999999999999999999999866799999999999999999999999999998876433333
Q ss_pred cHHHHHHHHHHhh--cc-----------ChhhHHHHHHHHhccccCC-HHHHHHHHH---HHHH---------hhcCCCH
Q 006763 159 TSHTLSKLLTALN--EC-----------TEWGQVFILDALSRYKAAD-AREAENIVE---RVTP---------RLQHANC 212 (632)
Q Consensus 159 ~~~~~~~Ll~~l~--~~-----------~ew~qi~lL~lL~~y~~~~-~~~~~~il~---~v~~---------~L~~~n~ 212 (632)
.+..+..|.+.+. ++ +||+|+++|++|+.|.+.+ ++....+.+ .+.+ .++|.|+
T Consensus 226 ~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~ 305 (621)
T 2vgl_A 226 VSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNA 305 (621)
T ss_dssp HHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccch
Confidence 3433333333332 24 7999999999999999854 454444443 3332 3456666
Q ss_pred --HHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCc--cchhcccce-eEecc
Q 006763 213 --AVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP--TILAHEIKV-FFCKY 286 (632)
Q Consensus 213 --aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p--~~~~~~~~~-f~~l~ 286 (632)
||+|||+++++++. ++++.++. +.+.|.+++ ++++|+||++|++|..+++.+| ..++.|... |.|+.
T Consensus 306 ~~aVl~ea~~~i~~l~---~~~~~~~~----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~ 378 (621)
T 2vgl_A 306 KNAVLFEAISLIIHHD---SEPNLLVR----ACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALK 378 (621)
T ss_dssp HHHHHHHHHHHHHHHC---CCHHHHHH----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcC---CcHHHHHH----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhc
Confidence 99999999999874 25555553 456677777 5899999999999999999987 678888775 46777
Q ss_pred -CCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhH
Q 006763 287 -NDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVV 365 (632)
Q Consensus 287 -~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~ 365 (632)
++|.+||++||++|+.|+|++|++.|++||.+|+++.|.+|+++++++||.||.+|+++.+||+++|++++..+|+++.
T Consensus 379 ~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~ 458 (621)
T 2vgl_A 379 TERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVS 458 (621)
T ss_dssp TCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSC
T ss_pred cCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccch
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHhhccCChhh-HHHHHHHHHhcccCccCC-----HHHHHHHHhhhCCCCCHHHH
Q 006763 366 QEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPE-AKASMIWIIGEYAERIDN-----ADELLESFLESFPEEPAQVQ 439 (632)
Q Consensus 366 ~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~-a~~~~iWiLGEy~~~i~~-----~~~~l~~l~~~f~~e~~~vq 439 (632)
+|+|.++++++.++|+.+++++..|++.+++....+ ...+++|++||||+.+++ |.++++.+.++|..+++.||
T Consensus 459 ~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~ 538 (621)
T 2vgl_A 459 EEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTR 538 (621)
T ss_dssp SHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHH
Confidence 999999999999999999999999999887644332 235666999999998865 46899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHhhhc-CCCChHHHhhHHHHHHHhcCCHHHHHhhhccCCCCCCCC
Q 006763 440 LQLLTATVKLFLKKPTEGPQQMIQVVLNNATV-ETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDD 510 (632)
Q Consensus 440 ~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~-~s~~~dvrdRA~~y~~LL~~~~~~~~~ivl~~~p~~~~~ 510 (632)
.++|||++|++.+.|+ .++.++.+|+.++. ++.|+||||||++||+|++.+++.++++++.+||++++.
T Consensus 539 ~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~~~~~~~vl~~~P~~~~~ 608 (621)
T 2vgl_A 539 ALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPER 608 (621)
T ss_dssp HHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSSCSTTTTTTSSSCCCCCCC
T ss_pred HHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccCHHHHHHHHhhcCCCCCCc
Confidence 9999999999999985 78999999999875 478999999999999999987778899999999999764
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=7.8e-78 Score=687.66 Aligned_cols=505 Identities=19% Similarity=0.270 Sum_probs=431.2
Q ss_pred CCCCCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHH
Q 006763 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (632)
Q Consensus 1 mtlG~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~ 80 (632)
|++|+|++|+|++|+++++|+|+++||+||||++.|++.+||+++|+||+|+||++|+||++|++|||+||+|+.+++++
T Consensus 62 ~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~ 141 (618)
T 1w63_A 62 HMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCR 141 (618)
T ss_dssp HHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHH
T ss_pred HHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccH
Q 006763 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (632)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~ 160 (632)
.+.+.|.+++.|++|||||+|++|++|+|+.+|+.++ +|++.+.++|+|+|++|+.+|+.+|.+|+..++.. .....
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~--~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~ 218 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME--MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFR 218 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG--GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH--HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHH
Confidence 9999999999999999999999999999999999997 59999999999999999999999999998665321 00111
Q ss_pred HHHHHHHHHhh---------------ccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHh------hcCCCHHHHHHHH
Q 006763 161 HTLSKLLTALN---------------ECTEWGQVFILDALSRYKAADAREAENIVERVTPR------LQHANCAVVLSAV 219 (632)
Q Consensus 161 ~~~~~Ll~~l~---------------~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~------L~~~n~aVv~eai 219 (632)
+.+..+++.|. .++||+|+.++++|+.|++.+++....+++.+... ++|.+.+|+++|+
T Consensus 219 ~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~ 298 (618)
T 1w63_A 219 KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETV 298 (618)
T ss_dssp TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 12333343333 25899999999999999998876554444333332 3566789999999
Q ss_pred HHHHHhhhccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhcccc-eeEeccCCchhHHHHHH
Q 006763 220 KMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKL 297 (632)
Q Consensus 220 k~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~~-~f~~l~~dd~~Ik~~kL 297 (632)
++++.+.+ ++.... .+.++|..++ ++++|+||++|++|..+++.+|..+++|.. +|+|++++|.+||++|+
T Consensus 299 ~~i~~l~~---~~~l~~----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~al 371 (618)
T 1w63_A 299 LTIMDIKS---ESGLRV----LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAM 371 (618)
T ss_dssp HHHHHSCC---CHHHHH----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHH
T ss_pred HHHHhcCC---CHHHHH----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHH
Confidence 99998532 343332 3456677777 579999999999999999999999999875 78899999999999999
Q ss_pred HHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHh
Q 006763 298 EIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (632)
Q Consensus 298 ~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr 377 (632)
++|+.|++++|++.|++||.+|+.+.|.+|+++++++||.||.+|++...||+++++++++..++++.+++|.+++++++
T Consensus 372 elL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~ 451 (618)
T 1w63_A 372 ELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLIT 451 (618)
T ss_dssp HHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCcccHHHHHHHHHHhhcc-CChhhHHHHHHHHHhcccCccCC---------------HHHHHHHHhhhCCCCCHHHHHH
Q 006763 378 RYPNTYESIIATLCESLDT-LDEPEAKASMIWIIGEYAERIDN---------------ADELLESFLESFPEEPAQVQLQ 441 (632)
Q Consensus 378 ~~p~~~~~ii~~L~~~l~~-i~~p~a~~~~iWiLGEy~~~i~~---------------~~~~l~~l~~~f~~e~~~vq~~ 441 (632)
++|+.+++++..|++.+++ +.......+++|++||||+.+.+ ..++|+.+++.| .+++.||.+
T Consensus 452 ~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~ 530 (618)
T 1w63_A 452 NSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGY 530 (618)
T ss_dssp HSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHH
T ss_pred cChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHH
Confidence 9999999999999999874 33333445789999999987643 356677777777 789999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcCCHHHHHhhhccCCCCCCCCCCcCCHHHHH
Q 006763 442 LLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLD 520 (632)
Q Consensus 442 iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~~~~~~~~ivl~~~p~~~~~~~~~~~~~l~ 520 (632)
+|||++|++.+.|+ .++.++.+|+.+. ++.|+||||||++||++++.+++ ++++++.+||++++.++..++++.+
T Consensus 531 ~lta~~Kl~~~~~~--~~~~l~~~L~~~~-~~~d~evrdRA~~y~~ll~~~~~-~~~~vl~~~P~~~~~~~~~~~~~~~ 605 (618)
T 1w63_A 531 ALTAIMKLSTRFTC--TVNRIKKVVSIYG-SSIDVELQQRAVEYNALFKKYDH-MRSALLERMPVMEKVTTNGPSEIVQ 605 (618)
T ss_dssp HHHHHHHHHTTCSS--CHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTTT-HHHHHHSCCCCCCC-----------
T ss_pred HHHHHHHHHHhCcc--hHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHcCcHH-HHHHHhhcCCCCCccccCCcccccC
Confidence 99999999999986 6889999999876 67899999999999999987664 6778999999998766555554443
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=5.1e-51 Score=430.15 Aligned_cols=289 Identities=16% Similarity=0.254 Sum_probs=205.3
Q ss_pred CCCCCC-----CcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCc
Q 006763 1 MTVGKD-----VSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV 75 (632)
Q Consensus 1 mtlG~D-----vs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~ 75 (632)
|+.|++ ++++|++|+|+++|+|+++|||||||+..|++..+| ++|+||+|+||++|+||++||+|||+||+|+.
T Consensus 55 ~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e-~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~ 133 (355)
T 3tjz_B 55 INQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED-VIIVTSSLTKDMTGKEDSYRGPAVRALCQITD 133 (355)
T ss_dssp HHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC-GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC
T ss_pred HHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC
Confidence 567988 789999999999999999999999999999999655 78999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCc
Q 006763 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (632)
Q Consensus 76 ~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~ 155 (632)
++|++++.+++++++.|++|||||+|++|++|++..+||.++ +|++.++++++|+||+|+++|+.++++|+.+++
T Consensus 134 ~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~--~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--- 208 (355)
T 3tjz_B 134 STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK--RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--- 208 (355)
T ss_dssp TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH--HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch---
Confidence 999999999999999999999999999999999999999997 599999999999999999999999999987652
Q ss_pred hhccHHHHHHHHHHhhcc---ChhhHHHHHHHHhccccCC-HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCC
Q 006763 156 FEITSHTLSKLLTALNEC---TEWGQVFILDALSRYKAAD-AREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITS 231 (632)
Q Consensus 156 ~~l~~~~~~~Ll~~l~~~---~ew~qi~lL~lL~~y~~~~-~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~ 231 (632)
..+.+|+..+.++ +||+|+.+++++.+|.+.+ +++.+.+++.+.++|+|.|++|+|||+++|+.+.+ . .
T Consensus 209 -----~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~-~ 281 (355)
T 3tjz_B 209 -----LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-C-S 281 (355)
T ss_dssp -----HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred -----HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-C-C
Confidence 2577788877764 7999999999999999988 67788999999999999999999999999997532 1 1
Q ss_pred hHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhcccc-eeEeccCCchhHHHHHHHHHHHhcCc
Q 006763 232 TDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASD 306 (632)
Q Consensus 232 ~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~~-~f~~l~~dd~~Ik~~kL~lL~~L~n~ 306 (632)
.. ....++.+|..++ ++++|+||+||++|..+++++|..++.|.. +..|+.|.+.+|+..|+..|.+.++|
T Consensus 282 ~~----~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e 354 (355)
T 3tjz_B 282 AK----ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSE 354 (355)
T ss_dssp ----------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred HH----HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhhhccCC
Confidence 11 2235677787777 589999999999999999999999998865 66789888999999999999998876
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.77 E-value=1.7e-16 Score=177.83 Aligned_cols=479 Identities=13% Similarity=0.091 Sum_probs=325.0
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHH--HHHHHHHHhhcCCCChHHHhHHHHHhcCC---CchhhHHHH
Q 006763 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLA--ILAVNTFVKDSQDPNPLIRALAVRTMGCI---RVDKITEYL 82 (632)
Q Consensus 8 s~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~--lL~iNtl~kDl~~~np~ir~lALr~L~~I---~~~ei~~~l 82 (632)
..+++.+.+++.+++..+|+.+--.+..++...++.. -.+...+.+=.+++++.+|..|.+.++.+ ..+.+.+.+
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l 165 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL 165 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3455555566678888999999888888887665421 12344444444678899998887777654 335667888
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHH
Q 006763 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (632)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~ 162 (632)
.+.+.+++.|+++.||+.|+.++.++....+.......+++.+..+++|.++.|...|+.+|..+....+.. ......
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~ 243 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEALV 243 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--HHHHHH
Confidence 999999999999999999999999998765532211257888999999999999999999998887654321 111112
Q ss_pred HHHHHHHhhccChhhHHHHHHHHhccccC--CHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHH
Q 006763 163 LSKLLTALNECTEWGQVFILDALSRYKAA--DAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240 (632)
Q Consensus 163 ~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~--~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~ 240 (632)
+..+...+.+.+...+....+.|..+... .......+++.+...+++.++.|...|+..+..+...............
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 22233333444444555666666554421 1112345677777888999999999999988776554432211111222
Q ss_pred hcccchhhhcc-CchhHHHHHHHHHHHHHhhCcc-chhcccc-ee-EeccCCchhHHHHHHHHHHHhcCcc----cHHHH
Q 006763 241 KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPT-ILAHEIK-VF-FCKYNDPIYVKMEKLEIMIKLASDR----NIDQV 312 (632)
Q Consensus 241 ~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~-~~~~~~~-~f-~~l~~dd~~Ik~~kL~lL~~L~n~~----Ni~~I 312 (632)
.+.+.+..+++ .++.+|..+...+..+....+. .+.+++. .| .++.+++..+|..+++.|..++..- ....+
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 403 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34555556664 5789999999888887754322 1222221 22 2345666889999998877776532 24568
Q ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcc--cHHHHHH
Q 006763 313 LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA--AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN--TYESIIA 388 (632)
Q Consensus 313 v~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~--~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~--~~~~ii~ 388 (632)
++.|.+.+.+.+..++..++..++.++..++.. .+..+..++.++......|...++..+..+....+. ....+++
T Consensus 404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp 483 (588)
T 1b3u_A 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 888888888888889999999999999876543 246778888888888788888899988888876443 2245566
Q ss_pred HHHHhhccCChhhHHHHHHHHHhcccCccCC---HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 006763 389 TLCESLDTLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVV 465 (632)
Q Consensus 389 ~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~---~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~l 465 (632)
.+.+.+.+ .....+..++|++|+.+..+.. .+.++..+.+.+.+..++||...+.++.+++.....+...+.+...
T Consensus 484 ~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~ 562 (588)
T 1b3u_A 484 KVLAMSGD-PNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPI 562 (588)
T ss_dssp HHHHTTTC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred HHHHHhhC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 66554433 3457789999999998765432 2456666777777888999999999999998665432122344444
Q ss_pred HHhhhcCCCChHHHhhHHHHHHHhc
Q 006763 466 LNNATVETDNPDLRDRAYIYWRLLS 490 (632)
Q Consensus 466 l~~~~~~s~~~dvrdRA~~y~~LL~ 490 (632)
+.... ++.|++||+.|..-..-++
T Consensus 563 l~~l~-~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 563 LEKLT-QDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHTT
T ss_pred HHHHc-CCCchhHHHHHHHHHHHhh
Confidence 44433 4689999999998766543
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.69 E-value=3.6e-15 Score=166.94 Aligned_cols=432 Identities=11% Similarity=0.099 Sum_probs=292.9
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcH-HHHHHHHHHhhcCCCChHHHhHHHHHhcCC----CchhhHHHHHHH
Q 006763 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDL-AILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVDKITEYLCDP 85 (632)
Q Consensus 11 f~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el-~lL~iNtl~kDl~~~np~ir~lALr~L~~I----~~~ei~~~l~~~ 85 (632)
.+-+.++..+++...|..+...+..++..-++. .--+++.+.+-++|+++.+|..|+++++.+ +.+...+.+.+.
T Consensus 128 ~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~ 207 (588)
T 1b3u_A 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPM 207 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHH
Confidence 333444667778888888877777776654432 223456666777899999999999999987 344566788899
Q ss_pred HHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHH
Q 006763 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSK 165 (632)
Q Consensus 86 v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~ 165 (632)
+.+++.|.++.||+.|+.++.++....++......+++.+..++.|.++.|..+|+.+|..+...-+... .....+..
T Consensus 208 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~ 285 (588)
T 1b3u_A 208 FSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPA 285 (588)
T ss_dssp HHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chhHHHHH
Confidence 9999999999999999999999987655422222577889999999999999999999988876432211 11123455
Q ss_pred HHHHhhccChhhHHHHHHHHhccccC---CH---HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHH
Q 006763 166 LLTALNECTEWGQVFILDALSRYKAA---DA---REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC 239 (632)
Q Consensus 166 Ll~~l~~~~ew~qi~lL~lL~~y~~~---~~---~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~ 239 (632)
+++.+.+.++..+......|..+... +. .....++..+...+++.+..|...++.++..+.+.+..... .
T Consensus 286 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~----~ 361 (588)
T 1b3u_A 286 FQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT----I 361 (588)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHH----H
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHH----H
Confidence 66666777777776666666554422 11 22455677777788999999999998888766443322211 1
Q ss_pred Hhcccchhhhcc-CchhHHHHHHHHHHHHHhhCcc-chhcc-cce-eEeccCCchhHHHHHHHHHHHhcCc----ccHHH
Q 006763 240 KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPT-ILAHE-IKV-FFCKYNDPIYVKMEKLEIMIKLASD----RNIDQ 311 (632)
Q Consensus 240 ~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~-~~~~~-~~~-f~~l~~dd~~Ik~~kL~lL~~L~n~----~Ni~~ 311 (632)
..+.+.+..+++ .++++|..++..+..+....+. .+.+. +.. ..+..+++..+|..+++.+..++.. .....
T Consensus 362 ~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 441 (588)
T 1b3u_A 362 EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEK 441 (588)
T ss_dssp HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 234555666665 5789999999999988865431 11111 111 1234456688999999998887642 12246
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcc--cHHHHH
Q 006763 312 VLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA--AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN--TYESII 387 (632)
Q Consensus 312 Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~--~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~--~~~~ii 387 (632)
+++-+...+.+.+.+++..++.+++.++..+++. ....+..+.+++......+...++..+..+....+. ....++
T Consensus 442 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~ 521 (588)
T 1b3u_A 442 LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHML 521 (588)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7888888899999999999999999999887653 123344444444444556667777777766654221 234566
Q ss_pred HHHHHhhccCChhhHHHHHHHHHhcccCccCCH---HHHHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 006763 388 ATLCESLDTLDEPEAKASMIWIIGEYAERIDNA---DELLESFLESFPEEPAQVQLQLLTATVKL 449 (632)
Q Consensus 388 ~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~~---~~~l~~l~~~f~~e~~~vq~~iLta~~Kl 449 (632)
+.|.+.+.+ ..++++..++|.+|+++..+... +.++..+..-..+.+..||.....|+.++
T Consensus 522 ~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 522 PTVLRMAGD-PVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHGGGC-SCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHhhCCC-CCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 667666655 35789999999999998765432 23333333334567888888888777655
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.64 E-value=9.2e-14 Score=163.85 Aligned_cols=481 Identities=16% Similarity=0.146 Sum_probs=315.6
Q ss_pred chhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHH----HHHHHHHHhhcCCCChHHHhHHHHHhcCCCc--------h
Q 006763 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLA----ILAVNTFVKDSQDPNPLIRALAVRTMGCIRV--------D 76 (632)
Q Consensus 9 ~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~----lL~iNtl~kDl~~~np~ir~lALr~L~~I~~--------~ 76 (632)
.++..+.+++..++..+|+-++-.+..+++..++.. --+++.+.+-++|+++.+|..|+.++..+.. +
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~ 294 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV 294 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 345556667788899999999999998888776532 2345666677788999999999988887753 2
Q ss_pred hhHHHHHHHHHhhh-----------CC-----------CChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCCh
Q 006763 77 KITEYLCDPLQRCL-----------KD-----------DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNP 134 (632)
Q Consensus 77 ei~~~l~~~v~~~L-----------~d-----------~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~ 134 (632)
...+.+++.+.+.+ .| .+..||+.|+.|+.++....++.+-. .+++.+..++.|.++
T Consensus 295 ~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~-~l~~~l~~~l~~~~~ 373 (852)
T 4fdd_A 295 RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLP-HILPLLKELLFHHEW 373 (852)
T ss_dssp TTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHhcCCCH
Confidence 34456777777776 44 45679999999999999887765443 578899999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccC-----CHHHHHHHHHHHHHhhcC
Q 006763 135 MVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAA-----DAREAENIVERVTPRLQH 209 (632)
Q Consensus 135 ~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~-----~~~~~~~il~~v~~~L~~ 209 (632)
.+..+|+.++..|....+...-......+..++..+.+.++-.+......+.+++.. .......+++.+...+++
T Consensus 374 ~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d 453 (852)
T 4fdd_A 374 VVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD 453 (852)
T ss_dssp HHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC
Confidence 999999999999976433221233455677778888888877777777777766532 112345677888888888
Q ss_pred CCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCccc------hhcccc--
Q 006763 210 ANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI------LAHEIK-- 280 (632)
Q Consensus 210 ~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~~------~~~~~~-- 280 (632)
.++.|...|+.++..+...... + +..+...+.+.|..+++ .+.....++++.+..|+..-... +..-+.
T Consensus 454 ~~~~vr~~a~~aL~~l~~~~~~-~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l 531 (852)
T 4fdd_A 454 SNKRVQEAACSAFATLEEEACT-E-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPL 531 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHHGG-G-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhH-h-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHH
Confidence 8999999999998876543221 1 11122234444555553 34455556777777776432221 111111
Q ss_pred --eeEeccCCchhHHHHHHHHHHHhcCc--cc----HHHHHHHHH----Hhh-------------hhcCHHHHHHHHHHH
Q 006763 281 --VFFCKYNDPIYVKMEKLEIMIKLASD--RN----IDQVLLEFK----EYA-------------TEVDVDFVRKAVRAI 335 (632)
Q Consensus 281 --~f~~l~~dd~~Ik~~kL~lL~~L~n~--~N----i~~Iv~EL~----~yl-------------~~~d~~~~~~~i~aI 335 (632)
.+..+.+++..++ ..++.+..++.. .. ...++..+. .++ ...|.+++..++..|
T Consensus 532 ~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l 610 (852)
T 4fdd_A 532 IQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLL 610 (852)
T ss_dssp HHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHH
T ss_pred HHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHH
Confidence 1112234444443 566666555532 11 223333222 221 123678999999999
Q ss_pred HHHHHhhhhhHH------HHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccH----HHHHHHHHHhhccCChhhHHHH
Q 006763 336 GRCAIKLERAAE------RCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY----ESIIATLCESLDTLDEPEAKAS 405 (632)
Q Consensus 336 g~la~k~~~~~~------~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~----~~ii~~L~~~l~~i~~p~a~~~ 405 (632)
+.++..++.... .+++.+++++......+.+++...+.++.+..++.. ..++..+.+.++ ..+++++..
T Consensus 611 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~-~~~~~v~~~ 689 (852)
T 4fdd_A 611 SGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN-PEFISVCNN 689 (852)
T ss_dssp HHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCC-TTSHHHHHH
T ss_pred HHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC-ccchHHHHH
Confidence 999998865533 457788888877778899999999999998776532 345666666663 346788999
Q ss_pred HHHHHhcccCccC-----CHHHHHHHHhhhCCC--CCHHHHHHHHHHHHHHhhcCCCC---ChHHHHHHHHHhhhcCCCC
Q 006763 406 MIWIIGEYAERID-----NADELLESFLESFPE--EPAQVQLQLLTATVKLFLKKPTE---GPQQMIQVVLNNATVETDN 475 (632)
Q Consensus 406 ~iWiLGEy~~~i~-----~~~~~l~~l~~~f~~--e~~~vq~~iLta~~Kl~~~~p~e---~~~~~v~~ll~~~~~~s~~ 475 (632)
++|.+|+++..+. ....++..++..+.. .+..++.....++.|+..++|+. .....+...++. .....|
T Consensus 690 a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~-l~~~~d 768 (852)
T 4fdd_A 690 ATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTS-LRNIRD 768 (852)
T ss_dssp HHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHH-HHTSCS
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHH-hccccc
Confidence 9999999876543 235666666665433 35688999999999999987642 133344444443 333456
Q ss_pred hHHHhhHHHHHH-HhcCCHHH
Q 006763 476 PDLRDRAYIYWR-LLSTDPEA 495 (632)
Q Consensus 476 ~dvrdRA~~y~~-LL~~~~~~ 495 (632)
.+.++-|+...- ++..+|+.
T Consensus 769 ~~e~~~a~~~l~~li~~~p~~ 789 (852)
T 4fdd_A 769 NEEKDSAFRGICTMISVNPSG 789 (852)
T ss_dssp SHHHHHHHHHHHHHHHHCGGG
T ss_pred cHHHHHHHHHHHHHHHhChHh
Confidence 677777765444 44556653
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.64 E-value=1.3e-13 Score=162.58 Aligned_cols=413 Identities=16% Similarity=0.180 Sum_probs=272.9
Q ss_pred hhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCc---hhhHH----HHHHHHHhh
Q 006763 17 CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV---DKITE----YLCDPLQRC 89 (632)
Q Consensus 17 l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~---~ei~~----~l~~~v~~~ 89 (632)
...++|...||-+.-.+..+ +.+|+........+ .++.+.++.+|-+|.-.+-+... ..+-+ .+-..+.++
T Consensus 21 ~~~s~d~~~r~~Ae~~L~~~-~~~p~~~~~l~~il-~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~ 98 (852)
T 4fdd_A 21 ESQSPDTTIQRTVQQKLEQL-NQYPDFNNYLIFVL-TKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNN 98 (852)
T ss_dssp HHTCSCHHHHHHHHHHHHHH-TTSHHHHHHHHHHH-HTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTT
T ss_pred HHhCcCHHHHHHHHHHHHHH-HhCCCHHHHHHHHH-hccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 34567777788877777755 45566443333333 34466777777777655543321 23322 445556666
Q ss_pred hCCCChHHHHHHHHHHHHhhhhc-cccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHH
Q 006763 90 LKDDDPYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLT 168 (632)
Q Consensus 90 L~d~~pyVRK~A~~al~kl~~~~-p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~ 168 (632)
+.|+++.||++|+.++..+.+.+ |+.-+ ++++.|..++.+.++.+.-.|+.+|..+++..+.. +.
T Consensus 99 l~~~~~~vr~~~a~~i~~ia~~~~~~~wp--~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~------------~~ 164 (852)
T 4fdd_A 99 IGDSSPLIRATVGILITTIASKGELQNWP--DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI------------LD 164 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTTTTCT--THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH------------HH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhcCccccH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH------------hc
Confidence 77777888888888888887775 33333 46777777777777777777777777776543210 00
Q ss_pred HhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhh
Q 006763 169 ALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVT 248 (632)
Q Consensus 169 ~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~ 248 (632)
. .+. ......++..+...+++.++.|..+|++++..+... .+.........+.+.+..
T Consensus 165 ~-----------------~~~---~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~--~~~~~~~~~~~~l~~l~~ 222 (852)
T 4fdd_A 165 S-----------------DVL---DRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS--RTQALMLHIDSFIENLFA 222 (852)
T ss_dssp H-----------------CSS---SSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT--TCHHHHTSHHHHHHHHHH
T ss_pred h-----------------hhh---cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHH
Confidence 0 000 001234566666778888999999999998866432 112111112233445555
Q ss_pred hcc-CchhHHHHHHHHHHHHHhhCccchhccccee-----EeccCCchhHHHHHHHHHHHhcCcc--------cHHHHHH
Q 006763 249 LLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVF-----FCKYNDPIYVKMEKLEIMIKLASDR--------NIDQVLL 314 (632)
Q Consensus 249 Lls-~~~niryvaL~~l~~i~~~~p~~~~~~~~~f-----~~l~~dd~~Ik~~kL~lL~~L~n~~--------Ni~~Iv~ 314 (632)
+++ .++++|..+++.+..++..+|+.+.+|+..+ .+..+++..+|..+++.+..++... .+..++.
T Consensus 223 ~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p 302 (852)
T 4fdd_A 223 LAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIP 302 (852)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 554 6789999999999999999999988886522 2456777899999999999998643 3445666
Q ss_pred HHHHhh-----------hh-----------cCHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhhchhhHHHHHHH
Q 006763 315 EFKEYA-----------TE-----------VDVDFVRKAVRAIGRCAIKLERA-AERCISVLLELIKIKVNYVVQEAIIV 371 (632)
Q Consensus 315 EL~~yl-----------~~-----------~d~~~~~~~i~aIg~la~k~~~~-~~~~v~~Ll~ll~~~~~~v~~e~i~~ 371 (632)
.|...+ .+ .+-.+++.+..+++.++...+.. ....+..+.+++......+...++..
T Consensus 303 ~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~a 382 (852)
T 4fdd_A 303 VLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 382 (852)
T ss_dssp HHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 666665 22 11125778889999999887643 34567777777777777888888888
Q ss_pred HHHHHhhCcc----cHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCcc------CCHHHHHHHHhhhCCCCCHHHHHH
Q 006763 372 IKDIFRRYPN----TYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI------DNADELLESFLESFPEEPAQVQLQ 441 (632)
Q Consensus 372 l~~ilr~~p~----~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i------~~~~~~l~~l~~~f~~e~~~vq~~ 441 (632)
+..+....++ ....++..+...+.+ ..+.++.+++|.+|+|+... ..-..++..+++.+.+.++.||..
T Consensus 383 lg~i~~~~~~~~~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~ 461 (852)
T 4fdd_A 383 LGAIAEGCMQGMIPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA 461 (852)
T ss_dssp HHHTTTTTHHHHGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 8888765432 235677777777765 36788999999999998753 124577888888887888999999
Q ss_pred HHHHHHHHhhcCCCC---ChHHHHHHHHHh
Q 006763 442 LLTATVKLFLKKPTE---GPQQMIQVVLNN 468 (632)
Q Consensus 442 iLta~~Kl~~~~p~e---~~~~~v~~ll~~ 468 (632)
...++..+.-..+.+ -...++..+++.
T Consensus 462 a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~ 491 (852)
T 4fdd_A 462 ACSAFATLEEEACTELVPYLAYILDTLVFA 491 (852)
T ss_dssp HHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHhhHhHHHHHHHHHHHH
Confidence 999998887544322 134455555543
No 9
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.60 E-value=1.2e-14 Score=164.69 Aligned_cols=388 Identities=15% Similarity=0.172 Sum_probs=225.3
Q ss_pred HHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHH
Q 006763 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSK 165 (632)
Q Consensus 86 v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~ 165 (632)
+.+++.++++.+||.+++++..+.+.+|+... -.++.+.+-|.|+|+.+.+.|+.++..+.. . ++....+..
T Consensus 54 vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~--l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~---~~~~~l~~~ 125 (591)
T 2vgl_B 54 VVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI--MAVNSFVKDCEDPNPLIRALAVRTMGCIRV---D---KITEYLCEP 125 (591)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH--TTHHHHGGGSSSSSHHHHHHHHHHHHTCCS---G---GGHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHcccCchHHH--HHHHHHHHHcCCCCHHHHHHHHHHHHcCCh---H---HHHHHHHHH
Confidence 44455555555555555555555444444432 133444444555555555555554444421 0 111122233
Q ss_pred HHHHhhccChhhHHHHHHHHhccccCCHHHH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHH-HHHHHHhc
Q 006763 166 LLTALNECTEWGQVFILDALSRYKAADAREA--ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDV-VRNLCKKM 242 (632)
Q Consensus 166 Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~--~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~-~~~~~~~~ 242 (632)
+.+.+.+.++..+-.....+.++...+++.. ..+++.+..+|++.++.|+..|+.++..+... +++. .-.+....
T Consensus 126 l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~--~~~~~~~~l~~~~ 203 (591)
T 2vgl_B 126 LRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES--HPNSNLLDLNPQN 203 (591)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS--CCSCCSCCCHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh--CCCccchhccHHH
Confidence 3334444444444443333333222111111 24677888889999999999999999987542 2210 00000011
Q ss_pred ccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhcccc-eeEeccCCchhHHHHHHHHHHHhcC-----cccHHHHHHH
Q 006763 243 APPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLAS-----DRNIDQVLLE 315 (632)
Q Consensus 243 ~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~~-~f~~l~~dd~~Ik~~kL~lL~~L~n-----~~Ni~~Iv~E 315 (632)
...|+..+ ..++-.+...|+.+..+....+......+. .+.++.+.+..|+..+...+..+.+ ++-+..++..
T Consensus 204 ~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~ 283 (591)
T 2vgl_B 204 INKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKK 283 (591)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHH
T ss_pred HHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 22233333 356667777777665554333322222222 2335667778999999999999873 3455555544
Q ss_pred HHH---hhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 006763 316 FKE---YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCE 392 (632)
Q Consensus 316 L~~---yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~ 392 (632)
+.. ++.+.|.+++..++++|+.++.+.|......+..++.+. ....+|..+++..+..+. +++..+.++..|.+
T Consensus 284 ~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~-~d~~~Ir~~al~~L~~l~--~~~nv~~iv~~L~~ 360 (591)
T 2vgl_B 284 LAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKY-NDPIYVKLEKLDIMIRLA--SQANIAQVLAELKE 360 (591)
T ss_dssp THHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCT-TSCHHHHHHHHHHHHHTC--CSSTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheecc-CChHHHHHHHHHHHHHHC--ChhhHHHHHHHHHH
Confidence 432 445688999999999999999887765444333322111 223567788877766654 34445678888888
Q ss_pred hhccCChhhHHHHHHHHHhcccCccC-CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhc
Q 006763 393 SLDTLDEPEAKASMIWIIGEYAERID-NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATV 471 (632)
Q Consensus 393 ~l~~i~~p~a~~~~iWiLGEy~~~i~-~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~ 471 (632)
++.+. +++.+..++|.||..+...+ ....++..+++-+......|+...+.++..++-+.|.. ....+..+.+. ..
T Consensus 361 ~l~~~-d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-~~~~v~~L~~~-l~ 437 (591)
T 2vgl_B 361 YATEV-DVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-YESIIATLCEN-LD 437 (591)
T ss_dssp HTTSS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-CCTTHHHHHHT-TT
T ss_pred HHhcC-CHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-HHHHHHHHHHH-HH
Confidence 88764 56788999999999887653 34667777777777778888888888888888888863 33455566553 44
Q ss_pred CCCChHHHhhHHHHHHHhcC
Q 006763 472 ETDNPDLRDRAYIYWRLLST 491 (632)
Q Consensus 472 ~s~~~dvrdRA~~y~~LL~~ 491 (632)
+..++++|..+ .|-+=+.
T Consensus 438 ~~~~~~~~~~~--~wilGey 455 (591)
T 2vgl_B 438 SLDEPDARAAM--IWIVGEY 455 (591)
T ss_dssp TCCSHHHHHHH--HHHHHTT
T ss_pred hccCHHHHHHH--HHHHHcc
Confidence 55678886544 4665443
No 10
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.59 E-value=3e-14 Score=162.35 Aligned_cols=405 Identities=13% Similarity=0.105 Sum_probs=291.3
Q ss_pred HHHHHhhcCCCChHHHhHHHHHhcCCC--chhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHH
Q 006763 48 VNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (632)
Q Consensus 48 iNtl~kDl~~~np~ir~lALr~L~~I~--~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L 125 (632)
++-+++.+++++...|.-|++-+-.+. ..++ ..+...+.+++.+++..+||-+++++..+++.+|+... -.++.+
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~-~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~--l~in~l 112 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA-HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL--LMTNCI 112 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC-GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH--HHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH--HHHHHH
Confidence 566778888777777777766655431 1122 33556677888999999999999999999988888654 256888
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHH
Q 006763 126 KDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP 205 (632)
Q Consensus 126 ~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~ 205 (632)
.+-|.|+|+.+.+.|+.+|..|... ++....+..+.+.+.+.+++..-.....+.+....+++....+++.+..
T Consensus 113 ~kDL~~~n~~vr~lAL~~L~~i~~~------~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~ 186 (618)
T 1w63_A 113 KNDLNHSTQFVQGLALCTLGCMGSS------EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKN 186 (618)
T ss_dssp HHHHSCSSSHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTT
T ss_pred HHhcCCCCHhHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 8889999999999999999998621 2334445666677778899887776666665544445445567777778
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhcc----------------CchhHHHHHHHHHHHHHh
Q 006763 206 RLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS----------------AEPEIQYVALRNINLIVQ 269 (632)
Q Consensus 206 ~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls----------------~~~niryvaL~~l~~i~~ 269 (632)
+|.+.|+.|+..|+.++..+... +++... ...++++.++.+|. .+|-.|...++.+..+..
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~~--~~~~~~-~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCER--SPDMLA-HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCCS--HHHHHH-HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred HhCCCCHhHHHHHHHHHHHHHHh--ChHHHH-HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 88999999999999999987532 343222 22344554554432 367788889999999888
Q ss_pred hCccchhccccee-------EeccCCchhHHHHHHHHHHHhcCcccH-HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHh
Q 006763 270 RRPTILAHEIKVF-------FCKYNDPIYVKMEKLEIMIKLASDRNI-DQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (632)
Q Consensus 270 ~~p~~~~~~~~~f-------~~l~~dd~~Ik~~kL~lL~~L~n~~Ni-~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k 341 (632)
..|..-......+ ....+....|...+...+..+.+.... ...++-|..++.+.|.+++.-++.+|+.++.+
T Consensus 264 ~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~ 343 (618)
T 1w63_A 264 NDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT 343 (618)
T ss_dssp TCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhh
Confidence 7765422211111 122334568999999999998764432 34677788889888999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCcc-CCH
Q 006763 342 LERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI-DNA 420 (632)
Q Consensus 342 ~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i-~~~ 420 (632)
.|.....+...++.++...+.+|...++..+..+... +-.+.++..|.+++.+. +++.+..++..||.-+... ++.
T Consensus 344 ~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~--~nv~~iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~ 420 (618)
T 1w63_A 344 DHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG--NNIRGMMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSK 420 (618)
T ss_dssp HHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS--SSTHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc--ccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccH
Confidence 8888888999999999999999999999988888643 33456788888888763 5678888888888887765 455
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh
Q 006763 421 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN 468 (632)
Q Consensus 421 ~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~ 468 (632)
..++..+++-+...+..++..++.++..+..+.|+- -...+..+.+.
T Consensus 421 ~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l-~~~~v~~L~~~ 467 (618)
T 1w63_A 421 RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEM-HAYTVQRLYKA 467 (618)
T ss_dssp HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCST-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhH-HHHHHHHHHHH
Confidence 666666665444445556666777888887777752 23355555554
No 11
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.58 E-value=5.9e-13 Score=163.03 Aligned_cols=480 Identities=13% Similarity=0.130 Sum_probs=303.3
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhcCCC-----CcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC---chhhH
Q 006763 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ-----PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VDKIT 79 (632)
Q Consensus 8 s~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~-----~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~---~~ei~ 79 (632)
++-+..++.-+.++|...|+++--.+......+ ++..--++..+.+-+.|+|+.+|..|+++++.+. .++..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 566888888899999999999977777766443 2333456677888889999999999998887653 34677
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccc------c--cccchHHHHHHHhcC-CChhHHHHHHHHHHHHHhc
Q 006763 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL------V--EDRGFLESLKDLISD-NNPMVVANAVAALAEIEEN 150 (632)
Q Consensus 80 ~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~------v--~~~~~~~~L~~lL~D-~d~~Vv~~Al~aL~eI~~~ 150 (632)
+.+.+.+.+.+.|.++.||.+|+.|+..+....+.. . ....+++.|.+.+.| .++.+...|+.+|.+++..
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999998765432 0 012477888888884 8899999999999999876
Q ss_pred CCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHH-HHHHHHHHHHhhcCCC-HHHHHHHHHHHHHhhhc
Q 006763 151 SSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADARE-AENIVERVTPRLQHAN-CAVVLSAVKMILQQMEL 228 (632)
Q Consensus 151 ~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~-~~~il~~v~~~L~~~n-~aVv~eaik~i~~~~~~ 228 (632)
.+..........+..++..+.+.+++.+...++.+..+....++. ...+++.+...|.+.+ ..+...++.++..+...
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~ 244 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQ 244 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 554333334556677777788888899988888888776543322 2234555555554322 22333334444433222
Q ss_pred cCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhcccce-----eEecc----------------
Q 006763 229 ITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKV-----FFCKY---------------- 286 (632)
Q Consensus 229 i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~~~-----f~~l~---------------- 286 (632)
... .+......+.+.+...+ ..++++|-.++..+..++...+.-+.+++.. +..+.
T Consensus 245 ~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~ 322 (1230)
T 1u6g_C 245 AGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENA 322 (1230)
T ss_dssp SSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------
T ss_pred hHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 111 11111122344444455 3578999999999999988776544333210 00000
Q ss_pred --------------------CC-chhHHHHHHHHHHHhcCcc--cHH----HHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 006763 287 --------------------ND-PIYVKMEKLEIMIKLASDR--NID----QVLLEFKEYATEVDVDFVRKAVRAIGRCA 339 (632)
Q Consensus 287 --------------------~d-d~~Ik~~kL~lL~~L~n~~--Ni~----~Iv~EL~~yl~~~d~~~~~~~i~aIg~la 339 (632)
+| ...+|+.+++.|..++... .+. .+++.|..++.+.+.+++..++.+++.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 402 (1230)
T 1u6g_C 323 MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL 402 (1230)
T ss_dssp ----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred ccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 00 1357999999998887632 223 34555666677778889999999998877
Q ss_pred Hhhhh-----------------------hHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcc----cHHHHHHHHHH
Q 006763 340 IKLER-----------------------AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN----TYESIIATLCE 392 (632)
Q Consensus 340 ~k~~~-----------------------~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~----~~~~ii~~L~~ 392 (632)
..... ....++..+.+.+......+...++..+..++...++ ....++..+.+
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~ 482 (1230)
T 1u6g_C 403 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIF 482 (1230)
T ss_dssp HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHH
T ss_pred HHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHH
Confidence 65421 1233455556667777777888888889988887654 23566777777
Q ss_pred hhccCCh-hhHHHHHHHHHhcccCccC------CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcC-C-----CCCh-
Q 006763 393 SLDTLDE-PEAKASMIWIIGEYAERID------NADELLESFLESFPEEPAQVQLQLLTATVKLFLKK-P-----TEGP- 458 (632)
Q Consensus 393 ~l~~i~~-p~a~~~~iWiLGEy~~~i~------~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~-p-----~e~~- 458 (632)
.+.+-.. ++++..++-.++....... .-..++..++..+.+....|+...+.++..+.-.. + ....
T Consensus 483 ~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 562 (1230)
T 1u6g_C 483 SLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562 (1230)
T ss_dssp HTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred HHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 7765332 2333322222222211110 11234555556666777888777766666554221 1 1113
Q ss_pred ---HHHHHHHHHhhhcCCCChHHHhhHHHHHHHh
Q 006763 459 ---QQMIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (632)
Q Consensus 459 ---~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL 489 (632)
..++..+++.....+.++++|+.|......+
T Consensus 563 ~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L 596 (1230)
T 1u6g_C 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQI 596 (1230)
T ss_dssp HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 3455555554333467899999998666544
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.55 E-value=2.8e-12 Score=138.74 Aligned_cols=329 Identities=16% Similarity=0.103 Sum_probs=225.6
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhcC--CCCcHHH-----HHHHHHHhhcCCC-ChHHHhHHHHHhcCCCc--hhhH-
Q 006763 11 FTDVVNCMQTENLELKKLVYLYLINYAK--SQPDLAI-----LAVNTFVKDSQDP-NPLIRALAVRTMGCIRV--DKIT- 79 (632)
Q Consensus 11 f~~vi~l~~s~d~~~Krl~YLyl~~~~~--~~~el~l-----L~iNtl~kDl~~~-np~ir~lALr~L~~I~~--~ei~- 79 (632)
++.+++.++++|...|..+...+..++. .++.... -++..|.+-++++ |+.+|..|+++++++.. ++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 6778888999999999999999887653 3443222 2466677778887 89999999999998754 3322
Q ss_pred ----HHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccc---ccccchHHHHHHHhcC-CChhHHHHHHHHHHHHHhcC
Q 006763 80 ----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISD-NNPMVVANAVAALAEIEENS 151 (632)
Q Consensus 80 ----~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~---v~~~~~~~~L~~lL~D-~d~~Vv~~Al~aL~eI~~~~ 151 (632)
..+++.+.+++.++++.||..|+.++..+...+++. +-..+.++.+.+++.+ .++.|..+|+.+|..++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 247888999999999999999999999998766542 2223678889999984 79999999999999998664
Q ss_pred -CCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHH-----HHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006763 152 -SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMILQQ 225 (632)
Q Consensus 152 -~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~-----~il~~v~~~L~~~n~aVv~eaik~i~~~ 225 (632)
+..........+..|++.+.+.++..+...+..|..+....++... .+++.+...+++.+..|...|++++.++
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 3333444456677888888888888888888888877755443322 3567777888999999999999999887
Q ss_pred hhccCChHHHHHHHH-hcccchhhhcc-CchhHHHHHHHHHHHHHhhCccchh----cc-cc-eeEeccCCchhHHHHHH
Q 006763 226 MELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA----HE-IK-VFFCKYNDPIYVKMEKL 297 (632)
Q Consensus 226 ~~~i~~~~~~~~~~~-~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~~~~----~~-~~-~f~~l~~dd~~Ik~~kL 297 (632)
.. .++...+.+.. .+.+.|+.+++ .++.+|..++..|..|+...+...+ .. +. .+..+.+++..+|..+.
T Consensus 262 ~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 262 VT--GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp TT--SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred hh--CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 53 23333332221 34556667774 5778899999888888764433221 11 11 11223344556666666
Q ss_pred HHHHHhcCc---ccHHH-----HHHHHHHhhhhcCHHHHHHHHHHHHHHHHh
Q 006763 298 EIMIKLASD---RNIDQ-----VLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (632)
Q Consensus 298 ~lL~~L~n~---~Ni~~-----Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k 341 (632)
..|..++.. +++.. +++.|.+.+.+.|.+++..++.+++.++..
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 666666532 23322 344555556555666666666666666543
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.55 E-value=2.6e-11 Score=142.08 Aligned_cols=438 Identities=13% Similarity=0.121 Sum_probs=291.8
Q ss_pred hHHHHHhh-cCCCcchHHHHHHHHHHhcCCC-CcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC--------------
Q 006763 11 FTDVVNCM-QTENLELKKLVYLYLINYAKSQ-PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------------- 74 (632)
Q Consensus 11 f~~vi~l~-~s~d~~~Krl~YLyl~~~~~~~-~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~-------------- 74 (632)
+.+++..+ .++|...|+-+--++..+.+.+ |+......+.+.+ .+.++.+|-+|...+-+..
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID--ENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC--TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence 34556666 7889999999999999876543 5544444444432 2357899999988888762
Q ss_pred -----chhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhc-cc-cccccchHHHHHHHhcCC-ChhHHHHHHHHHHH
Q 006763 75 -----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AE-LVEDRGFLESLKDLISDN-NPMVVANAVAALAE 146 (632)
Q Consensus 75 -----~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~-p~-~v~~~~~~~~L~~lL~D~-d~~Vv~~Al~aL~e 146 (632)
.++..+.+...+.+.+.+.++.||++++.++..+...+ |. ..+ ++++.|..++.+. |+.+.-.|+.++..
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~--~ll~~L~~~l~~~~~~~~r~~al~~l~~ 161 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP--ELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH--HHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccH--HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 23455677778888899999999999999999998874 53 333 4778888888888 99999999999999
Q ss_pred HHhcCCCC---chhccHHHHHHHHHHhhcc--ChhhHHHHHHHHhccccC------CHHHHHHHHHHHHHhhcCCCHHHH
Q 006763 147 IEENSSRP---IFEITSHTLSKLLTALNEC--TEWGQVFILDALSRYKAA------DAREAENIVERVTPRLQHANCAVV 215 (632)
Q Consensus 147 I~~~~~~~---~~~l~~~~~~~Ll~~l~~~--~ew~qi~lL~lL~~y~~~------~~~~~~~il~~v~~~L~~~n~aVv 215 (632)
++..-... ........+..+...+.+. ++-.+...++.+..+... .......+++.+...+++.+..+.
T Consensus 162 l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r 241 (861)
T 2bpt_A 162 MCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQ 241 (861)
T ss_dssp HHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHH
T ss_pred HHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHH
Confidence 98764322 1123334445555556555 455566677777653211 111223567777777888889999
Q ss_pred HHHHHHHHHhhhccCChHHHHHHHH-hcccchhhhc-cCchhHHHHHHHHHHHHHhhC-----------------ccchh
Q 006763 216 LSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQRR-----------------PTILA 276 (632)
Q Consensus 216 ~eaik~i~~~~~~i~~~~~~~~~~~-~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~-----------------p~~~~ 276 (632)
..+++++..+.... ++.+...+. .+.+.+...+ ..++++|..+++.+..++... +..+.
T Consensus 242 ~~a~~~l~~l~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (861)
T 2bpt_A 242 AAAFGCLCKIMSKY--YTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319 (861)
T ss_dssp HHHHHHHHHHHHHH--GGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHH
Confidence 88888887765321 111222222 3333333344 357899999999988887652 22222
Q ss_pred cccc----e-eEecc-------CCchhHHHHHHHHHHHhcC---cccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHh
Q 006763 277 HEIK----V-FFCKY-------NDPIYVKMEKLEIMIKLAS---DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (632)
Q Consensus 277 ~~~~----~-f~~l~-------~dd~~Ik~~kL~lL~~L~n---~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k 341 (632)
+++. . +.++. +|+..+|+.+.+.|..++. +.-+..+++.+.+.+.+.+...+..++.++|.++..
T Consensus 320 ~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 399 (861)
T 2bpt_A 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG 399 (861)
T ss_dssp HHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcC
Confidence 2211 1 11221 2336789988888877764 345667777777777788888899999999999865
Q ss_pred hh-h----hHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhC------cccHHHHHHHHHHhhccCChhhHHHHHHHHH
Q 006763 342 LE-R----AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY------PNTYESIIATLCESLDTLDEPEAKASMIWII 410 (632)
Q Consensus 342 ~~-~----~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~------p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiL 410 (632)
.. . ..+..+..+++.+......+...+...+..+.... +.....++..+.+.+.+ .+.++..++|.+
T Consensus 400 ~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~--~~~v~~~a~~al 477 (861)
T 2bpt_A 400 PDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD--HPKVATNCSWTI 477 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS--CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc--ChHHHHHHHHHH
Confidence 42 2 23345666666666666677777776666665432 33466788888888865 277888899998
Q ss_pred hcccCccC---------CHHHHHHHHhhhCCCC--CHHHHHHHHHHHHHHhhcCCCC
Q 006763 411 GEYAERID---------NADELLESFLESFPEE--PAQVQLQLLTATVKLFLKKPTE 456 (632)
Q Consensus 411 GEy~~~i~---------~~~~~l~~l~~~f~~e--~~~vq~~iLta~~Kl~~~~p~e 456 (632)
+.+++... ..+.++..++..+... ++.||...+.++..+....+.+
T Consensus 478 ~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 478 INLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp HHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh
Confidence 87665432 2356777777666532 3689999999999888777653
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.54 E-value=5.2e-13 Score=144.54 Aligned_cols=331 Identities=15% Similarity=0.113 Sum_probs=220.3
Q ss_pred HHHHHHHhhcCCCChHHHhHHHHHhcCC----Cch---hhHH--HHHHHHHhhhCCC-ChHHHHHHHHHHHHhhhhcccc
Q 006763 46 LAVNTFVKDSQDPNPLIRALAVRTMGCI----RVD---KITE--YLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAEL 115 (632)
Q Consensus 46 L~iNtl~kDl~~~np~ir~lALr~L~~I----~~~---ei~~--~l~~~v~~~L~d~-~pyVRK~A~~al~kl~~~~p~~ 115 (632)
+++..+.+.++++++.+|-.|++.+.++ ..+ ++++ .+++.+.+++.+. ++.||..|+.++..+...+++.
T Consensus 20 ~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 20 VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp --CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 4577778888899999999999888776 232 3333 5788899999998 9999999999999998765543
Q ss_pred cc---ccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhc-cHHHHHHHHHHhhc-cChhhHHHHHHHHhcccc
Q 006763 116 VE---DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNE-CTEWGQVFILDALSRYKA 190 (632)
Q Consensus 116 v~---~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~l~~-~~ew~qi~lL~lL~~y~~ 190 (632)
.. ..+.++.+.++|.+.++.|...|+.+|..+....+...-.+ ....+..|++.+.+ .++-.+...+..|..+..
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 22 24788999999999999999999999999986542111001 11235667777764 456667677777776653
Q ss_pred CC-----HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhhcc-CchhHHHHHHHH
Q 006763 191 AD-----AREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRN 263 (632)
Q Consensus 191 ~~-----~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~-~~~~~~L~~Lls-~~~niryvaL~~ 263 (632)
.. ......+++.+...+++.+..|+..++.++.++... .++..+.+. ..+.+.|+.++. .++++|..++..
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 257 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG--PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRA 257 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC--CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHH
Confidence 21 111245677778888999999999999999887532 233333222 245667777774 688999999999
Q ss_pred HHHHHhhCccchh----cc-cc-eeEeccCCchhHHHHHHHHHHHhcC--cccHH-----HHHHHHHHhhhhcCHHHHHH
Q 006763 264 INLIVQRRPTILA----HE-IK-VFFCKYNDPIYVKMEKLEIMIKLAS--DRNID-----QVLLEFKEYATEVDVDFVRK 330 (632)
Q Consensus 264 l~~i~~~~p~~~~----~~-~~-~f~~l~~dd~~Ik~~kL~lL~~L~n--~~Ni~-----~Iv~EL~~yl~~~d~~~~~~ 330 (632)
|..++...+...+ .. +. .+.++.+++..+|..++..|..++. +++.. .+++.|...+.+.+.++++.
T Consensus 258 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~ 337 (450)
T 2jdq_A 258 VGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKE 337 (450)
T ss_dssp HHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 9998876543211 11 11 1223445567788888888888773 33333 34556666777777778888
Q ss_pred HHHHHHHHHHhh-hhhH-----HHHHHHHHHHHhhhchhhHHHHHHHHHHHHhh
Q 006763 331 AVRAIGRCAIKL-ERAA-----ERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 378 (632)
Q Consensus 331 ~i~aIg~la~k~-~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~ 378 (632)
++.+|+.++... +... ..++..|++++......+...++..+.+++..
T Consensus 338 a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 888888777642 2111 12455666666655555555555565555543
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.53 E-value=2e-12 Score=144.08 Aligned_cols=378 Identities=13% Similarity=0.166 Sum_probs=246.3
Q ss_pred CcchhHHHHHhhcCCCcchHHHHHHHHHHhcCC--CCcHHHH----HHHHHHhhcCCC-ChHHHhHHHHHhcCCCc--hh
Q 006763 7 VSSLFTDVVNCMQTENLELKKLVYLYLINYAKS--QPDLAIL----AVNTFVKDSQDP-NPLIRALAVRTMGCIRV--DK 77 (632)
Q Consensus 7 vs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~--~~el~lL----~iNtl~kDl~~~-np~ir~lALr~L~~I~~--~e 77 (632)
.....+.+++.+.+++...++.+-.++..++.. ++....+ ++..|.+-+.++ |+.+|..|+.+|+++.. ++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 445678889999999999999999988888654 3332211 456778888887 89999999999998865 44
Q ss_pred hHHH-----HHHHHHhhhCCCChHHHHHHHHHHHHhhhhccc---cccccchHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 006763 78 ITEY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (632)
Q Consensus 78 i~~~-----l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~---~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~ 149 (632)
.... .++.+.+++.++++.||..|+.++..+...+|+ .+...+.++.|..+|.+.++.|..+|+.+|..++.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 3333 468889999999999999999999999876543 22234678999999999999999999999999987
Q ss_pred cC-CCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHH-----HHHHHHHHhhcCCCHHHHHHHHHHHH
Q 006763 150 NS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMIL 223 (632)
Q Consensus 150 ~~-~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~-----~il~~v~~~L~~~n~aVv~eaik~i~ 223 (632)
.. +...+......+..|+..+.+.++..+...+..|..+...+++... .++..+..+|++.+..|...|++++.
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 64 3322333345677788888888888888888888888765544333 34567778899999999999999998
Q ss_pred HhhhccCChHHHHHHH-Hhcccchhhhcc-CchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHH
Q 006763 224 QQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMI 301 (632)
Q Consensus 224 ~~~~~i~~~~~~~~~~-~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~ 301 (632)
++.. .++...+.+. ..+.+.|+.++. .++.+|..++..|..|+...+...+..
T Consensus 325 ~l~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~----------------------- 379 (530)
T 1wa5_B 325 NIVT--GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAV----------------------- 379 (530)
T ss_dssp HHTT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH-----------------------
T ss_pred HHHc--CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH-----------------------
Confidence 8753 2343333222 134455666664 467777777777777765333211100
Q ss_pred HhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhh---hH-----HHHHHHHHHHHhhhchhhHHHHHHHHH
Q 006763 302 KLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER---AA-----ERCISVLLELIKIKVNYVVQEAIIVIK 373 (632)
Q Consensus 302 ~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~---~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~ 373 (632)
.+ ..+++.|...+.+.+.++++.++.+|+.++....+ .. ..++..|++++......+...++..+.
T Consensus 380 --~~----~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~ 453 (530)
T 1wa5_B 380 --ID----ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 453 (530)
T ss_dssp --HH----TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred --HH----CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 00 01333444444455555666666666665543221 10 124556666665555555555555555
Q ss_pred HHHhhCccc----------H-H-----HHHHHHHHhhccCChhhHHHHHHHHHhcccCc
Q 006763 374 DIFRRYPNT----------Y-E-----SIIATLCESLDTLDEPEAKASMIWIIGEYAER 416 (632)
Q Consensus 374 ~ilr~~p~~----------~-~-----~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~ 416 (632)
+++...+.. + . ..+..|.....+ ..++++..+.|++..|...
T Consensus 454 ~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~-~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 454 NILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN-ENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGC-SCHHHHHHHHHHHHHHSSS
T ss_pred HHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHCCc
Confidence 555433211 0 0 135555554443 3556677777887776543
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.51 E-value=7.5e-12 Score=139.20 Aligned_cols=340 Identities=16% Similarity=0.163 Sum_probs=237.3
Q ss_pred chhHHHHHhhcCCCcchHHHHHHHHHHhcCCCC--cHHHH----HHHHHHhhcCCCC-hHHHhHHHHHhcCCCc--hhhH
Q 006763 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQP--DLAIL----AVNTFVKDSQDPN-PLIRALAVRTMGCIRV--DKIT 79 (632)
Q Consensus 9 ~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~--el~lL----~iNtl~kDl~~~n-p~ir~lALr~L~~I~~--~ei~ 79 (632)
..++.+++.+.++|...+..+--++..++...+ ....+ ++..|.+-+.+++ +.+|-.|+.+|++|.. ++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 347888999999999999888888877755432 22222 3566777788876 9999999999998865 4433
Q ss_pred H-----HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccc---cccccchHHHHHHHh-cCCChhHHHHHHHHHHHHHhc
Q 006763 80 E-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLI-SDNNPMVVANAVAALAEIEEN 150 (632)
Q Consensus 80 ~-----~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~---~v~~~~~~~~L~~lL-~D~d~~Vv~~Al~aL~eI~~~ 150 (632)
. -.++.+.+++.++++.||..|+.++..+...+|+ .+...+.++.|..+| .+.++.|..+|+.+|..++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 3 3678899999999999999999999999876553 233346778888888 678999999999999999977
Q ss_pred CCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHH-----HHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006763 151 SSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAVKMILQQ 225 (632)
Q Consensus 151 ~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~-----il~~v~~~L~~~n~aVv~eaik~i~~~ 225 (632)
.+...+......+..|+..+...++..+...+..|..+...+...... ++..+..+|++.++.|...|++++.++
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 544444444566778888888888888888999998887665544333 456788889999999999999999887
Q ss_pred hhccCChHHHHHHH-Hhcccchhhhcc-C-chhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHH
Q 006763 226 MELITSTDVVRNLC-KKMAPPLVTLLS-A-EPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIK 302 (632)
Q Consensus 226 ~~~i~~~~~~~~~~-~~~~~~L~~Lls-~-~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~ 302 (632)
.. .++...+.+. ..+.+.|+.++. . ++.++.-+...|..|+...+.... .
T Consensus 314 ~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~-------------------------~ 366 (528)
T 4b8j_A 314 VT--GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ-------------------------A 366 (528)
T ss_dssp TT--SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHH-------------------------H
T ss_pred Hc--CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHH-------------------------H
Confidence 53 2343333322 123445555553 4 566777777766666543221110 0
Q ss_pred hcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhh-hhhH-----HHHHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 006763 303 LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL-ERAA-----ERCISVLLELIKIKVNYVVQEAIIVIKDIF 376 (632)
Q Consensus 303 L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~-~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~il 376 (632)
+.+. .+++.|.+.+.+.+.++++.++.+|+.++..- +... ..++..+++++......+...++..+.+++
T Consensus 367 ~~~~----~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 367 VINA----GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL 442 (528)
T ss_dssp HHHT----TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHC----CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0111 24556666667778888889999998888762 2211 134677888887777777777777777777
Q ss_pred hhC
Q 006763 377 RRY 379 (632)
Q Consensus 377 r~~ 379 (632)
+..
T Consensus 443 ~~~ 445 (528)
T 4b8j_A 443 KVG 445 (528)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 17
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.51 E-value=1.1e-10 Score=136.63 Aligned_cols=479 Identities=13% Similarity=0.137 Sum_probs=297.4
Q ss_pred CcchhHHHHHhhcCC-CcchHHHHHHHHHHhcCCC-C------cHHHHHHHHHHhhcCCC--ChHHHhHHHHHhcCCC--
Q 006763 7 VSSLFTDVVNCMQTE-NLELKKLVYLYLINYAKSQ-P------DLAILAVNTFVKDSQDP--NPLIRALAVRTMGCIR-- 74 (632)
Q Consensus 7 vs~lf~~vi~l~~s~-d~~~Krl~YLyl~~~~~~~-~------el~lL~iNtl~kDl~~~--np~ir~lALr~L~~I~-- 74 (632)
...+++.++.++.++ +...|..+...+..+.+.- + ...--++..+.+-+.++ ++.+|..|+++++.+.
T Consensus 132 w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 211 (861)
T 2bpt_A 132 WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 456778888888887 8777777766665554421 1 22334455666667776 8999999999998741
Q ss_pred -chh-----hHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccc--c-chHHHHHHHhcCCChhHHHHHHHHHH
Q 006763 75 -VDK-----ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--R-GFLESLKDLISDNNPMVVANAVAALA 145 (632)
Q Consensus 75 -~~e-----i~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~--~-~~~~~L~~lL~D~d~~Vv~~Al~aL~ 145 (632)
... ..+++.+.+.+.+.+.++-||+.|+.|+.++....|+.+.. . .+++.+...+.|.+..|...|+..+.
T Consensus 212 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~ 291 (861)
T 2bpt_A 212 IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWS 291 (861)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 111 13568888889999999999999999999999988876542 1 35566667788999999999999888
Q ss_pred HHHhcC----------------CCCc-hhccHHHHHHHHHHhhcc------ChhhH-HHHHHHHhccccC-CHHHHHHHH
Q 006763 146 EIEENS----------------SRPI-FEITSHTLSKLLTALNEC------TEWGQ-VFILDALSRYKAA-DAREAENIV 200 (632)
Q Consensus 146 eI~~~~----------------~~~~-~~l~~~~~~~Ll~~l~~~------~ew~q-i~lL~lL~~y~~~-~~~~~~~il 200 (632)
.+.... .... .......+..++..+.+. ++|.. ....+.|..+... .......++
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~ 371 (861)
T 2bpt_A 292 TICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVL 371 (861)
T ss_dssp HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHH
Confidence 876542 0111 112234455666666542 34642 2233333322210 012234667
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCcc------
Q 006763 201 ERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPT------ 273 (632)
Q Consensus 201 ~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~------ 273 (632)
+.+...+++.+..+...|+.++..+.... .++.+......+.+.+...+. .++.+|..++..+..++...+.
T Consensus 372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~-~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 450 (861)
T 2bpt_A 372 EFVEQNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQ 450 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTT
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 77777888888999999999988875432 234444444556666666664 6789999999999888865322
Q ss_pred chhcccce-eEeccCCchhHHHHHHHHHHHhcCc----------ccHHHHHHHHHHhhhhcC--HHHHHHHHHHHHHHHH
Q 006763 274 ILAHEIKV-FFCKYNDPIYVKMEKLEIMIKLASD----------RNIDQVLLEFKEYATEVD--VDFVRKAVRAIGRCAI 340 (632)
Q Consensus 274 ~~~~~~~~-f~~l~~dd~~Ik~~kL~lL~~L~n~----------~Ni~~Iv~EL~~yl~~~d--~~~~~~~i~aIg~la~ 340 (632)
.+..-+.. +.++.+ +..+|..+...|..++.. .-+..|++.|...+.+.| ..++..++.+++.++.
T Consensus 451 ~~~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~ 529 (861)
T 2bpt_A 451 HLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVE 529 (861)
T ss_dssp THHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHH
Confidence 22222222 223434 477888888877766542 235678888888776444 6788889999999998
Q ss_pred hhhhhHHHH----HHHHHHHHhhh---------------chhhHHHHHHHHHHHHhhCcc----cHHHHHHHHHHhhccC
Q 006763 341 KLERAAERC----ISVLLELIKIK---------------VNYVVQEAIIVIKDIFRRYPN----TYESIIATLCESLDTL 397 (632)
Q Consensus 341 k~~~~~~~~----v~~Ll~ll~~~---------------~~~v~~e~i~~l~~ilr~~p~----~~~~ii~~L~~~l~~i 397 (632)
..+.....+ +..+++.+... ...+...++..+..+++..+. ....++..+.+.+...
T Consensus 530 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 609 (861)
T 2bpt_A 530 YATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKK 609 (861)
T ss_dssp HCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHST
T ss_pred HcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccC
Confidence 776544333 33445544421 122344566677777776543 2345666666666543
Q ss_pred ChhhHHHHHHHHHhcccCcc-----CCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHH----HHHHHHh
Q 006763 398 DEPEAKASMIWIIGEYAERI-----DNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQM----IQVVLNN 468 (632)
Q Consensus 398 ~~p~a~~~~iWiLGEy~~~i-----~~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~----v~~ll~~ 468 (632)
..+..+..+++.+|...... +.-+.++..+.+.+....+.+|...+.++..+....+.+ ..+. +..+++.
T Consensus 610 ~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~ 688 (861)
T 2bpt_A 610 DSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED-FRRYSDAMMNVLAQM 688 (861)
T ss_dssp TGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG-GHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh-ccchHHHHHHHHHHH
Confidence 21145555555555433221 113455666666555566778888888877776555432 4433 3333443
Q ss_pred hhcCCCChHHHhhHHHHHHH
Q 006763 469 ATVETDNPDLRDRAYIYWRL 488 (632)
Q Consensus 469 ~~~~s~~~dvrdRA~~y~~L 488 (632)
....+.++++|..+...+.-
T Consensus 689 l~~~~~~~~vr~~~~~~l~~ 708 (861)
T 2bpt_A 689 ISNPNARRELKPAVLSVFGD 708 (861)
T ss_dssp HHCTTCCTTHHHHHHHHHHH
T ss_pred hCCccccHhhhHHHHHHHHH
Confidence 22222358899988766543
No 18
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.46 E-value=1.8e-10 Score=135.10 Aligned_cols=446 Identities=11% Similarity=0.131 Sum_probs=278.4
Q ss_pred CCcchhHHHHHhhcCC--CcchHHHHHHHHHHhcCCC-Cc----HHHHHHHHHHhhcCCC--ChHHHhHHHHHhcCCCc-
Q 006763 6 DVSSLFTDVVNCMQTE--NLELKKLVYLYLINYAKSQ-PD----LAILAVNTFVKDSQDP--NPLIRALAVRTMGCIRV- 75 (632)
Q Consensus 6 Dvs~lf~~vi~l~~s~--d~~~Krl~YLyl~~~~~~~-~e----l~lL~iNtl~kDl~~~--np~ir~lALr~L~~I~~- 75 (632)
....+++.++.++.++ +...|+.+...+..+.+.- ++ ..-.+++.+.+-+.++ ++.+|..|+++++.+..
T Consensus 125 ~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3566788888888888 8888888777777666532 22 2333455566666666 78999999999987532
Q ss_pred --hhh-----HHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccc--c-chHHHHHHHhcCCChhHHHHHHHHHH
Q 006763 76 --DKI-----TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--R-GFLESLKDLISDNNPMVVANAVAALA 145 (632)
Q Consensus 76 --~ei-----~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~--~-~~~~~L~~lL~D~d~~Vv~~Al~aL~ 145 (632)
..+ .+.+.+.+.+.+.+.++.||+.|+.|+.++....|+.+.. . .+++.+...+.|.++.|...|+..+.
T Consensus 205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~ 284 (876)
T 1qgr_A 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 111 1357788888889999999999999999999988876542 1 46677777778899999999988887
Q ss_pred HHHhcC----------------C-CCchhcc----HHHHHHHHHHhhc------cChhhH----HHHHHHHhccccCCHH
Q 006763 146 EIEENS----------------S-RPIFEIT----SHTLSKLLTALNE------CTEWGQ----VFILDALSRYKAADAR 194 (632)
Q Consensus 146 eI~~~~----------------~-~~~~~l~----~~~~~~Ll~~l~~------~~ew~q----i~lL~lL~~y~~~~~~ 194 (632)
.+.... + ...+... ...+..+++.+.. .+.|.. ...|..+....+. .
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~ 362 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--G
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--h
Confidence 776431 0 1111121 2334445555532 235742 2344444443332 2
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCcc
Q 006763 195 EAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPT 273 (632)
Q Consensus 195 ~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~ 273 (632)
....+++.+...+++.+..+...++.++..+.... .++.+......+.+.++..++ .++.+|..++..+..++...+.
T Consensus 363 ~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~-~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 363 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP-EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch
Confidence 24466777777888899999999999998875432 223333444556666666664 5789999999999999987554
Q ss_pred ch--hcc----cc-eeEeccCCchhHHHHHHHHHHHhcCc--------------------ccHHHHHHHHHHhhhhcC--
Q 006763 274 IL--AHE----IK-VFFCKYNDPIYVKMEKLEIMIKLASD--------------------RNIDQVLLEFKEYATEVD-- 324 (632)
Q Consensus 274 ~~--~~~----~~-~f~~l~~dd~~Ik~~kL~lL~~L~n~--------------------~Ni~~Iv~EL~~yl~~~d-- 324 (632)
.+ .++ +. .+.++.+ +..+|..++..|..++.. .-+..|++.|...+.+.+
T Consensus 442 ~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~ 520 (876)
T 1qgr_A 442 AAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGH 520 (876)
T ss_dssp GTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSC
T ss_pred hcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcc
Confidence 21 122 22 2233433 466787777777766532 124566666666554431
Q ss_pred -HHHHHHHHHH--------------------------------------------------------HHHHHHhhh----
Q 006763 325 -VDFVRKAVRA--------------------------------------------------------IGRCAIKLE---- 343 (632)
Q Consensus 325 -~~~~~~~i~a--------------------------------------------------------Ig~la~k~~---- 343 (632)
..++..++.+ ++.++..++
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~ 600 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence 2333333333 343433222
Q ss_pred -hhHHHHHHHHHHHHhhhc--hhhHHHHHHHHHHHHhhCc----ccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCc
Q 006763 344 -RAAERCISVLLELIKIKV--NYVVQEAIIVIKDIFRRYP----NTYESIIATLCESLDTLDEPEAKASMIWIIGEYAER 416 (632)
Q Consensus 344 -~~~~~~v~~Ll~ll~~~~--~~v~~e~i~~l~~ilr~~p----~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~ 416 (632)
+....++..++++++... .++..+++..+..++...+ .....++..+...+.+...+.++..++|.+|+.+..
T Consensus 601 ~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 680 (876)
T 1qgr_A 601 LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRA 680 (876)
T ss_dssp HTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH
Confidence 222334455555555543 2566666777766665422 223456666777776654677888899998887644
Q ss_pred cC-----CHHHHHHHHhhhCCC--CCHHHHHHHHHHHHHHhhcCCC
Q 006763 417 ID-----NADELLESFLESFPE--EPAQVQLQLLTATVKLFLKKPT 455 (632)
Q Consensus 417 i~-----~~~~~l~~l~~~f~~--e~~~vq~~iLta~~Kl~~~~p~ 455 (632)
.. ..+.++..+++.+.. .+.++|...+.++..+....++
T Consensus 681 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~ 726 (876)
T 1qgr_A 681 LQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG 726 (876)
T ss_dssp HGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG
T ss_pred HHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhch
Confidence 32 135677777777765 3567999999999888765544
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.46 E-value=6.2e-12 Score=146.95 Aligned_cols=439 Identities=12% Similarity=0.119 Sum_probs=282.2
Q ss_pred HHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccc---cccccchHHH
Q 006763 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLES 124 (632)
Q Consensus 48 iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~---~v~~~~~~~~ 124 (632)
+..+.++|.++++.+|..|++.++.+...++..-.++.+.++|.+.++.||..|+.++.++....+. .+...+.++.
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 5788899999999999999999987766677788899999999999999999999999999864332 1212357788
Q ss_pred HHHHhc-CCChhHHHHHHHHHHHHHhcCCCCchhc-cHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHH-----H
Q 006763 125 LKDLIS-DNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA-----E 197 (632)
Q Consensus 125 L~~lL~-D~d~~Vv~~Al~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~-----~ 197 (632)
|.++|. +.|+.+..+|+.+|..+...... ...+ ....+..|++.+...++-.|...+..|..++..+.... .
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~ 275 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHHREG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLA 275 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCchh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHc
Confidence 888886 45999999999999988654211 1111 12356778888888888888888888877654322111 2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhhcc-C-chhHHHHHHHHHHHHHhhC---
Q 006763 198 NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-A-EPEIQYVALRNINLIVQRR--- 271 (632)
Q Consensus 198 ~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~-~~~~~~L~~Lls-~-~~niryvaL~~l~~i~~~~--- 271 (632)
..+..+...|++.+..|...++.++..+. ..+++....+. ...++.|+.++. . ....+..+...+..+....
T Consensus 276 g~v~~Lv~lL~~~~~~v~~~a~~aL~~La--~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~ 353 (780)
T 2z6g_A 276 GGLQKMVALLNKTNVKFLAITTDCLQILA--YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 353 (780)
T ss_dssp THHHHHHHGGGCCCHHHHHHHHHHHHHHH--TTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHh--cCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHH
Confidence 45677778888888777766666665443 12444333322 133456677774 3 3456667777777776421
Q ss_pred ccchhcc-cc-eeEeccCCchhHHHHHHHHHHHhcCcc----cHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhh
Q 006763 272 PTILAHE-IK-VFFCKYNDPIYVKMEKLEIMIKLASDR----NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA 345 (632)
Q Consensus 272 p~~~~~~-~~-~f~~l~~dd~~Ik~~kL~lL~~L~n~~----Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~ 345 (632)
+.++... +. .+..+.+.+..+++.++..|..++... ....+++.|...+.+.|.++++.++.+++.++...+..
T Consensus 354 ~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~ 433 (780)
T 2z6g_A 354 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433 (780)
T ss_dssp HHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 1122211 12 123344566789999999999998543 35678899999999999999999999999998653322
Q ss_pred H-----HHHHHHHHHHHhhhch--hhHHHHHHHHHHHHhhCccc---H-----HHHHHHHHHhhccCChhhHHHHHHHHH
Q 006763 346 A-----ERCISVLLELIKIKVN--YVVQEAIIVIKDIFRRYPNT---Y-----ESIIATLCESLDTLDEPEAKASMIWII 410 (632)
Q Consensus 346 ~-----~~~v~~Ll~ll~~~~~--~v~~e~i~~l~~ilr~~p~~---~-----~~ii~~L~~~l~~i~~p~a~~~~iWiL 410 (632)
. ...+..|++++...++ .+...++..+.+|....++. + ...+..|.+.+..-..+..+..++|.|
T Consensus 434 ~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL 513 (780)
T 2z6g_A 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 513 (780)
T ss_dssp HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Confidence 2 2357888999887543 67788888888887655542 1 123667777776655567899999999
Q ss_pred hcccCccCC--------H-HHHHHHHhhh----------------CCC--CCHHHHHHHHHHHHHHhhcCCCCChHH---
Q 006763 411 GEYAERIDN--------A-DELLESFLES----------------FPE--EPAQVQLQLLTATVKLFLKKPTEGPQQ--- 460 (632)
Q Consensus 411 GEy~~~i~~--------~-~~~l~~l~~~----------------f~~--e~~~vq~~iLta~~Kl~~~~p~e~~~~--- 460 (632)
|..+....+ . +.+++.+-.. +.. .+.+++...+.++.++.. .+. .+.
T Consensus 514 ~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~-~~~--~~~~l~ 590 (780)
T 2z6g_A 514 RNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR-DIH--NRIVIR 590 (780)
T ss_dssp HHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT-SHH--HHHHHH
T ss_pred HHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc-Chh--hHHHHH
Confidence 987642211 1 1222222110 211 235678788888888753 111 111
Q ss_pred ---HHHHHHHhhhcCCCChHHHhhHHHHHHHhcCCHH
Q 006763 461 ---MIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 494 (632)
Q Consensus 461 ---~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~~~~ 494 (632)
.+..+++.. .+.++++|..|.....-|..+++
T Consensus 591 ~~~~i~~Lv~lL--~~~~~~v~~~a~~aL~~L~~~~~ 625 (780)
T 2z6g_A 591 GLNTIPLFVQLL--YSPIENIQRVAAGVLCELAQDKE 625 (780)
T ss_dssp HTCCHHHHHHGG--GCSCHHHHHHHHHHHHHHHTSHH
T ss_pred HCCcHHHHHHHH--cCCCHHHHHHHHHHHHHHhcCHH
Confidence 234455543 35789999998876555554543
No 20
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.46 E-value=3.2e-11 Score=141.52 Aligned_cols=471 Identities=12% Similarity=0.049 Sum_probs=279.9
Q ss_pred HHhhcCCCcchHHHHHHHHHHhcCCCCcHH----H-HHHHHHHhhcCCCChHHHhHHHHHhcCCCchh------------
Q 006763 15 VNCMQTENLELKKLVYLYLINYAKSQPDLA----I-LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK------------ 77 (632)
Q Consensus 15 i~l~~s~d~~~Krl~YLyl~~~~~~~~el~----l-L~iNtl~kDl~~~np~ir~lALr~L~~I~~~e------------ 77 (632)
..++.+.+..+|+.++-.+..++...++.. . -+++.+.+-+.+.++.+|..|+.+++.+....
T Consensus 223 ~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 302 (876)
T 1qgr_A 223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (876)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccc
Confidence 345667788889888888888777665431 1 34555566677889999999998877664321
Q ss_pred ---------------hHHHHHHHHHhhhC-------CCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChh
Q 006763 78 ---------------ITEYLCDPLQRCLK-------DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPM 135 (632)
Q Consensus 78 ---------------i~~~l~~~v~~~L~-------d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~ 135 (632)
..+.+++.+.+.+. |.++.+|+.|+.|+..+....++.+-+ .+++.+...+.|.++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~l~~l~~~l~~~~~~ 381 (876)
T 1qgr_A 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-HVLPFIKEHIKNPDWR 381 (876)
T ss_dssp HSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHTTCSSHH
T ss_pred cCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHH-HHHHHHHHHccCCChH
Confidence 23566677777775 457899999999999998877654432 5778888999999999
Q ss_pred HHHHHHHHHHHHHhcCCCC-chhccHHHHHHHHHHhhccChhhHHHHHHHHhccccC------CHHHHHHHHHHHHHhhc
Q 006763 136 VVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAA------DAREAENIVERVTPRLQ 208 (632)
Q Consensus 136 Vv~~Al~aL~eI~~~~~~~-~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~------~~~~~~~il~~v~~~L~ 208 (632)
+..+|+.++..+....+.. .-......+..++..+.+.++..+...+..|.++... .......+++.+...++
T Consensus 382 ~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~ 461 (876)
T 1qgr_A 382 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (876)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc
Confidence 9999999999887543211 1123344566777778888887777777777665532 12345677888888887
Q ss_pred CCCHHHHHHHHHHHHHhhhccC------------ChHHHHHHHHhcccchhhhccC----chhHHHHH------------
Q 006763 209 HANCAVVLSAVKMILQQMELIT------------STDVVRNLCKKMAPPLVTLLSA----EPEIQYVA------------ 260 (632)
Q Consensus 209 ~~n~aVv~eaik~i~~~~~~i~------------~~~~~~~~~~~~~~~L~~Lls~----~~niryva------------ 260 (632)
+. +.|...+++++..+..... ..+.+..+...+.+.|..++.. +.++|..+
T Consensus 462 ~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 462 AE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred CC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence 74 7888888888776543211 0000001111223333333321 22444434
Q ss_pred --------------------------------------------HHHHHHHHhhCc-cchhcccc-----eeEeccCCc-
Q 006763 261 --------------------------------------------LRNINLIVQRRP-TILAHEIK-----VFFCKYNDP- 289 (632)
Q Consensus 261 --------------------------------------------L~~l~~i~~~~p-~~~~~~~~-----~f~~l~~dd- 289 (632)
+..+..++...+ .-+.++.. .+.++.+..
T Consensus 541 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 620 (876)
T 1qgr_A 541 KDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG 620 (876)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccC
Confidence 444444444333 33333321 111222221
Q ss_pred -hhHHHHHHHHHHHhcCc------ccHHHHHHHHHHhhhhc-CHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHH
Q 006763 290 -IYVKMEKLEIMIKLASD------RNIDQVLLEFKEYATEV-DVDFVRKAVRAIGRCAIKLER----AAERCISVLLELI 357 (632)
Q Consensus 290 -~~Ik~~kL~lL~~L~n~------~Ni~~Iv~EL~~yl~~~-d~~~~~~~i~aIg~la~k~~~----~~~~~v~~Ll~ll 357 (632)
.++|..++..+..++.. .-+..+++.|...+.+. +.+++..++..++.++..... ....++..+++.+
T Consensus 621 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 700 (876)
T 1qgr_A 621 SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENL 700 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 36788888888777642 22456777777777776 778888888888888876543 3445566666666
Q ss_pred hhh--chhhHHHHHHHHHHHHhhCccc----HHHHHHHHHHhhccCC---hh-------hHHHHHH-------HHHhccc
Q 006763 358 KIK--VNYVVQEAIIVIKDIFRRYPNT----YESIIATLCESLDTLD---EP-------EAKASMI-------WIIGEYA 414 (632)
Q Consensus 358 ~~~--~~~v~~e~i~~l~~ilr~~p~~----~~~ii~~L~~~l~~i~---~p-------~a~~~~i-------WiLGEy~ 414 (632)
... ...+...++..+.++....+.- ...+++.+.+.+..-. ++ ..+..+. -.+|+..
T Consensus 701 ~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~ 780 (876)
T 1qgr_A 701 GNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQ 780 (876)
T ss_dssp TCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 652 3456677777777777644322 2344555554443211 11 2333222 2334321
Q ss_pred --------CccCCHHHHHHHHhhhCCCC--CHHHHHHHHHHHHHHhhcCCC-CChH-----HHHHHHHHhhhcCCCChHH
Q 006763 415 --------ERIDNADELLESFLESFPEE--PAQVQLQLLTATVKLFLKKPT-EGPQ-----QMIQVVLNNATVETDNPDL 478 (632)
Q Consensus 415 --------~~i~~~~~~l~~l~~~f~~e--~~~vq~~iLta~~Kl~~~~p~-e~~~-----~~v~~ll~~~~~~s~~~dv 478 (632)
...+..+.++..+.....+. +..||...+.++.++....+. + .. ..+..+++.+. ++.++++
T Consensus 781 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~~i~~ll~~~l-~~~~~~~ 858 (876)
T 1qgr_A 781 ENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDV-LKLVEARPMIHELLTEGR-RSKTNKA 858 (876)
T ss_dssp SSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHH-HHHHHTSHHHHHHHHHHH-HCSCHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHH-HHHHHhcHHHHHHHHHHh-hcCCHhH
Confidence 11112344443332222344 678999999999988776654 2 22 34566666444 3578999
Q ss_pred HhhHHHHHHHh
Q 006763 479 RDRAYIYWRLL 489 (632)
Q Consensus 479 rdRA~~y~~LL 489 (632)
|+-|..-...+
T Consensus 859 r~~a~~a~~~~ 869 (876)
T 1qgr_A 859 KTLARWATKEL 869 (876)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888655443
No 21
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.45 E-value=2.7e-11 Score=148.34 Aligned_cols=441 Identities=11% Similarity=0.127 Sum_probs=286.3
Q ss_pred chhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCc-HHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC---ch--------
Q 006763 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPD-LAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD-------- 76 (632)
Q Consensus 9 ~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~e-l~lL~iNtl~kDl~~~np~ir~lALr~L~~I~---~~-------- 76 (632)
.+...+++.+.+++...|+.+...+..+++.-++ ..--+++.+.+-+.|+++.+|..|..+++.+. .+
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~ 127 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 127 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchH
Confidence 4566777888899999999999999998875544 33456788888899999999998888887763 22
Q ss_pred -hhHHHHHHHHHhhhC-CCChHHHHHHHHHHHHhhhhccccccc--cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCC
Q 006763 77 -KITEYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (632)
Q Consensus 77 -ei~~~l~~~v~~~L~-d~~pyVRK~A~~al~kl~~~~p~~v~~--~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~ 152 (632)
...+.++|.+.+++. +.++.+|..|+.++..+....++.+.. ..+++.+...|.|.++.|...|+.++..+....+
T Consensus 128 ~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 128 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence 267889999999999 489999999999999998766554431 2466777788899999999999999999887654
Q ss_pred CCchhccHHHHHHHHHHhhccChhh----HHHHHHHHhccccCC-HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q 006763 153 RPIFEITSHTLSKLLTALNECTEWG----QVFILDALSRYKAAD-AREAENIVERVTPRLQHANCAVVLSAVKMILQQME 227 (632)
Q Consensus 153 ~~~~~l~~~~~~~Ll~~l~~~~ew~----qi~lL~lL~~y~~~~-~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~ 227 (632)
...+ ...+..++..+.+.++|. -+..+..+....+.. ......+++.+...+++.++.|.-.++.++..+..
T Consensus 208 ~~~~---~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 208 NIVF---VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp ---C---TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4332 234556666665443331 222333332222210 01123567777777777777766666666555433
Q ss_pred ccCChHHHHHHHHhcccchhhhccC--------------------------------------chhHHHHHHHHHHHHHh
Q 006763 228 LITSTDVVRNLCKKMAPPLVTLLSA--------------------------------------EPEIQYVALRNINLIVQ 269 (632)
Q Consensus 228 ~i~~~~~~~~~~~~~~~~L~~Lls~--------------------------------------~~niryvaL~~l~~i~~ 269 (632)
..... ++.+...+.+.++..+.. ..++|..++..+..++.
T Consensus 285 ~~~~~--~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~ 362 (1230)
T 1u6g_C 285 RCPKE--VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS 362 (1230)
T ss_dssp CTTCC--CHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHT
T ss_pred HChHH--HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHH
Confidence 22111 111112233333332211 13579999999999998
Q ss_pred hCccchhcccce-----eEeccCCchhHHHHHHHHHHHhcCc-------------------------ccHHHHHHHHHHh
Q 006763 270 RRPTILAHEIKV-----FFCKYNDPIYVKMEKLEIMIKLASD-------------------------RNIDQVLLEFKEY 319 (632)
Q Consensus 270 ~~p~~~~~~~~~-----f~~l~~dd~~Ik~~kL~lL~~L~n~-------------------------~Ni~~Iv~EL~~y 319 (632)
..|+.+.+++.. ...+.+....+|..+++.+..++.. ..+..|++-+.+.
T Consensus 363 ~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~ 442 (1230)
T 1u6g_C 363 TRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ 442 (1230)
T ss_dssp TCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHH
Confidence 777655554321 1234455688999999887766542 1223344444455
Q ss_pred hhhcCHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHhhhch--hhHHHHHHHHHHHHhhC-ccc----HHHHHH
Q 006763 320 ATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVN--YVVQEAIIVIKDIFRRY-PNT----YESIIA 388 (632)
Q Consensus 320 l~~~d~~~~~~~i~aIg~la~k~~----~~~~~~v~~Ll~ll~~~~~--~v~~e~i~~l~~ilr~~-p~~----~~~ii~ 388 (632)
+.+.+...+..++..++.++...+ +..+.++..+++.+..... .+..+++..+..++... |+. ...++.
T Consensus 443 l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp 522 (1230)
T 1u6g_C 443 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVP 522 (1230)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHH
Confidence 778888888889999999988754 3456778888888887654 67777888888777643 332 233456
Q ss_pred HHHHhhccCChhhHHHHHHHHHhcccCccC------------CHHHHHHHHhhhC--CCCCHHHHHHHHHHHHHHhhcCC
Q 006763 389 TLCESLDTLDEPEAKASMIWIIGEYAERID------------NADELLESFLESF--PEEPAQVQLQLLTATVKLFLKKP 454 (632)
Q Consensus 389 ~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~------------~~~~~l~~l~~~f--~~e~~~vq~~iLta~~Kl~~~~p 454 (632)
.+...+.+ ..+.++..+++.+++..+.+. ....++..++..+ .+.++++|...+.++..+....+
T Consensus 523 ~L~~~l~d-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 523 PVVACVGD-PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHcc-cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 66665655 234444555566655442211 1246777777776 56788999999999999887654
Q ss_pred C
Q 006763 455 T 455 (632)
Q Consensus 455 ~ 455 (632)
+
T Consensus 602 ~ 602 (1230)
T 1u6g_C 602 D 602 (1230)
T ss_dssp G
T ss_pred c
Confidence 3
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.45 E-value=1e-11 Score=138.25 Aligned_cols=331 Identities=13% Similarity=0.124 Sum_probs=218.5
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHhhhhc--cc--cccccchHHHHHHHhcCC-ChhHHHHHHHHHHHHHhcCCCCch
Q 006763 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDIN--AE--LVEDRGFLESLKDLISDN-NPMVVANAVAALAEIEENSSRPIF 156 (632)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~--p~--~v~~~~~~~~L~~lL~D~-d~~Vv~~Al~aL~eI~~~~~~~~~ 156 (632)
.++.+.+.|.+.++.+|..|+.++.++.... |. .+...+.++.|..+|.+. ++.|...|+.+|..++..++....
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 3666778889999999999999999997653 31 222347889999999987 899999999999999764321111
Q ss_pred hc-cHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHH-----HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccC
Q 006763 157 EI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (632)
Q Consensus 157 ~l-~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~-----~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~ 230 (632)
.+ ....+..|+..+.+.++..+...+..|..+...++.... .+++.+...+++.+..|...|+.++.++...-
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~- 246 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK- 246 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS-
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC-
Confidence 11 122356667777778888898899999888765543322 34667778888888999999999998875321
Q ss_pred ChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCccchhc-----ccc-eeEeccCCchhHHHHHHHHHHHh
Q 006763 231 STDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAH-----EIK-VFFCKYNDPIYVKMEKLEIMIKL 303 (632)
Q Consensus 231 ~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~~~~~-----~~~-~f~~l~~dd~~Ik~~kL~lL~~L 303 (632)
++.........+.+.|+.++. .+++++..++..|..|+...+..... -+. .+.++.+.+..++..++..|..+
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 011111223456777788884 67899999999999998765543221 111 22344556678888888888888
Q ss_pred cCcc--cHH-----HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhhhchhhHHHHHHH
Q 006763 304 ASDR--NID-----QVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA-----ERCISVLLELIKIKVNYVVQEAIIV 371 (632)
Q Consensus 304 ~n~~--Ni~-----~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~ 371 (632)
+... ... .+++.|...+.+.+..++..++.+|+.++...+... ...+..|++++......+..+++..
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~a 406 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWA 406 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 7532 222 355667777777778888888888888875332221 1245567777766666666777777
Q ss_pred HHHHHhhC-c--ccHH-----HHHHHHHHhhccCChhhHHHHHHHHHhccc
Q 006763 372 IKDIFRRY-P--NTYE-----SIIATLCESLDTLDEPEAKASMIWIIGEYA 414 (632)
Q Consensus 372 l~~ilr~~-p--~~~~-----~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~ 414 (632)
+.++.... + +... .+++.|++.+.+ .+++++..++|.++.+.
T Consensus 407 L~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 407 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI-ADNRIIEVTLDALENIL 456 (530)
T ss_dssp HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Confidence 77776542 2 2221 134455555543 34556666666666553
No 23
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.45 E-value=3.4e-11 Score=140.70 Aligned_cols=469 Identities=12% Similarity=0.092 Sum_probs=283.7
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchh-----h--HHHHH
Q 006763 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----I--TEYLC 83 (632)
Q Consensus 11 f~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~e-----i--~~~l~ 83 (632)
.+.+++.+.+++.+.|+.+--.+. +. ...++..=++..|.+-|.++++.+|..|+.+|++|...+ + .+.++
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~-~~-~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i 194 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLIN-YQ-DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 194 (780)
T ss_dssp ---------CCSCHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHH-hh-hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChH
Confidence 466777777877666553222222 22 123444556777888888999999999999999886421 1 13466
Q ss_pred HHHHhhhCC-CChHHHHHHHHHHHHhhhhcc--ccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhc-c
Q 006763 84 DPLQRCLKD-DDPYVRKTAAICVAKLYDINA--ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-T 159 (632)
Q Consensus 84 ~~v~~~L~d-~~pyVRK~A~~al~kl~~~~p--~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l-~ 159 (632)
+.+.+.|.+ .++.+|+.|+.++.++..... +.+...+.++.|.++|++.++.|...|+.+|..++.........+ .
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~ 274 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL 274 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 777777764 599999999999999764321 123334788999999999999999999999999987653321111 1
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHH-----HHHHHHHHhhcCCCHHHH-HHHHHHHHHhhhccCChH
Q 006763 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVV-LSAVKMILQQMELITSTD 233 (632)
Q Consensus 160 ~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~-----~il~~v~~~L~~~n~aVv-~eaik~i~~~~~~i~~~~ 233 (632)
...+..|++.+...++-.+...+.+|..+...+++... ..++.+..++++.++..+ ..++.++..+.. +++
T Consensus 275 ~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~---~~~ 351 (780)
T 2z6g_A 275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV---CSS 351 (780)
T ss_dssp TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT---STT
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc---ChH
Confidence 23566777777765544455555566555444433322 235566667777665444 445555554432 222
Q ss_pred HHHHHH-Hhcccchhhhcc-CchhHHHHHHHHHHHHHhhCccc--hhcccce-eEeccCCchhHHHHHHHHHHHhcCcc-
Q 006763 234 VVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI--LAHEIKV-FFCKYNDPIYVKMEKLEIMIKLASDR- 307 (632)
Q Consensus 234 ~~~~~~-~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~~--~~~~~~~-f~~l~~dd~~Ik~~kL~lL~~L~n~~- 307 (632)
....++ ..+++.|+.++. .++.++.-++..+..|+...+.. ...-+.. +..+.+++..+|..+..+|..|+...
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~ 431 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 222221 234566777774 57788888999999998765432 1111221 22355677899999999999998743
Q ss_pred -cHHH-----HHHHHHHhhhh-cC-HHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHHhhhch-hhHHHHHH
Q 006763 308 -NIDQ-----VLLEFKEYATE-VD-VDFVRKAVRAIGRCAIKLERA--------AERCISVLLELIKIKVN-YVVQEAII 370 (632)
Q Consensus 308 -Ni~~-----Iv~EL~~yl~~-~d-~~~~~~~i~aIg~la~k~~~~--------~~~~v~~Ll~ll~~~~~-~v~~e~i~ 370 (632)
|... .++.|.+.+.+ .+ .+++..++++|+.++...+.. ....+..|++++..... .+..++..
T Consensus 432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~ 511 (780)
T 2z6g_A 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 511 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHH
Confidence 3332 45667777765 33 489999999999998643321 12347788999988765 78888989
Q ss_pred HHHHHHhhCcccH-----HHHHHHHHHhhccCChhhHHHHHHHHHhc----------------------ccCccCCH---
Q 006763 371 VIKDIFRRYPNTY-----ESIIATLCESLDTLDEPEAKASMIWIIGE----------------------YAERIDNA--- 420 (632)
Q Consensus 371 ~l~~ilr~~p~~~-----~~ii~~L~~~l~~i~~p~a~~~~iWiLGE----------------------y~~~i~~~--- 420 (632)
.+.++... ++.+ ..++..|++.+.+ .+++.+..++|.++. .+....+.
T Consensus 512 aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l 589 (780)
T 2z6g_A 512 LIRNLALC-PANHAPLREQGAIPRLVQLLVR-AHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVI 589 (780)
T ss_dssp HHHHHHSS-HHHHHHHHHTTHHHHHHHHHHH-HHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHhcC-HHHHHHHHHCCCHHHHHHHHHh-cchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHH
Confidence 99998763 3222 2345666666643 123344444444443 22110000
Q ss_pred --HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHH------HHHHHHhhhcCCCChHHHhhHHHHHHHhcC
Q 006763 421 --DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQM------IQVVLNNATVETDNPDLRDRAYIYWRLLST 491 (632)
Q Consensus 421 --~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~------v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~ 491 (632)
...+..+++-+...++.||.....++..+... ++ .... +..+.+. . ++.|++||..|..-..-+..
T Consensus 590 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~--~~~~i~~~g~i~~L~~L-l-~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 590 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KE--AAEAIEAEGATAPLTEL-L-HSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-HH--HHHHHHHTTCHHHHHHG-G-GCSCHHHHHHHHHHHHHHHT
T ss_pred HHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HH--HHHHHHHCCCHHHHHHH-H-cCCCHHHHHHHHHHHHHHHc
Confidence 11234555566677899999999888888632 21 2222 3334443 2 46899999998876654443
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.42 E-value=1.4e-10 Score=128.15 Aligned_cols=436 Identities=11% Similarity=0.092 Sum_probs=270.8
Q ss_pred CcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCch-----hhH--HHHHHHHHhhhCC-CChHHHHHHHHHHHHhhhhc
Q 006763 41 PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD-----KIT--EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDIN 112 (632)
Q Consensus 41 ~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~-----ei~--~~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~~~ 112 (632)
++...-++..|.+-++++|+.+|..|+.+|+++... .+. +..++.+.+.|.+ .++.+|+.|+.++.++....
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 344445678888888899999999999999988542 122 2467778888864 58999999999999976531
Q ss_pred c--ccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhc-cHHHHHHHHHHhhccChhhHHHHHHHHhccc
Q 006763 113 A--ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYK 189 (632)
Q Consensus 113 p--~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~ 189 (632)
. ..+.+.+.++.|.++|.+.++.|...|+.+|..++..+......+ ....+..|++.+...++-.+......|..+.
T Consensus 92 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1 122234778999999999999999999999999987753321111 2345677788887766655666666776665
Q ss_pred cCCHHHHHH-----HHHHHHHhhcCCCH-HHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhhcc-CchhHHHHHH
Q 006763 190 AADAREAEN-----IVERVTPRLQHANC-AVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVAL 261 (632)
Q Consensus 190 ~~~~~~~~~-----il~~v~~~L~~~n~-aVv~eaik~i~~~~~~i~~~~~~~~~~-~~~~~~L~~Lls-~~~niryvaL 261 (632)
..+++.... .++.+...+++.++ .+...+.+++.++.. +++....+. ....++|+.++. .+++++.-++
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV---CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT---STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc---CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 544433222 34455566665444 455566676666532 333322222 244566777774 5788999999
Q ss_pred HHHHHHHhhCccc--hhcccce-eEeccCCchhHHHHHHHHHHHhcCc--ccHHHH-----HHHHHHhhhh--cCHHHHH
Q 006763 262 RNINLIVQRRPTI--LAHEIKV-FFCKYNDPIYVKMEKLEIMIKLASD--RNIDQV-----LLEFKEYATE--VDVDFVR 329 (632)
Q Consensus 262 ~~l~~i~~~~p~~--~~~~~~~-f~~l~~dd~~Ik~~kL~lL~~L~n~--~Ni~~I-----v~EL~~yl~~--~d~~~~~ 329 (632)
..+..++...+.. ....+.. +..+.+++..+|..+..+|..++.. +|...+ ++.|.+.+.+ .+.+++.
T Consensus 249 ~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~ 328 (529)
T 1jdh_A 249 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 328 (529)
T ss_dssp HHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHH
Confidence 9999998754432 1111221 2234567789999999999999874 344433 5566677765 2378999
Q ss_pred HHHHHHHHHHHhhhhhHH--------HHHHHHHHHHhhhch-hhHHHHHHHHHHHHhhCcccHH-----HHHHHHHHhhc
Q 006763 330 KAVRAIGRCAIKLERAAE--------RCISVLLELIKIKVN-YVVQEAIIVIKDIFRRYPNTYE-----SIIATLCESLD 395 (632)
Q Consensus 330 ~~i~aIg~la~k~~~~~~--------~~v~~Ll~ll~~~~~-~v~~e~i~~l~~ilr~~p~~~~-----~ii~~L~~~l~ 395 (632)
.++++++.++...+.... ..+..+++++....+ .+..+++..+.++... ++.+. .+++.|++.+.
T Consensus 329 ~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll~ 407 (529)
T 1jdh_A 329 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLV 407 (529)
T ss_dssp HHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHHH
Confidence 999999999765333211 237788888888764 7888888888888764 33322 34667777665
Q ss_pred cCChhhHHHHHHHHHhc--ccCccCCHHH--------------------------HHHHHhhhCCCCCHHHHHHHHHHHH
Q 006763 396 TLDEPEAKASMIWIIGE--YAERIDNADE--------------------------LLESFLESFPEEPAQVQLQLLTATV 447 (632)
Q Consensus 396 ~i~~p~a~~~~iWiLGE--y~~~i~~~~~--------------------------~l~~l~~~f~~e~~~vq~~iLta~~ 447 (632)
+ .+++.+..++|.++. +..-. .+.+ .+..+++-..+.++++|.....++.
T Consensus 408 ~-~~~~v~~~a~~~l~n~~~~~~~-~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~ 485 (529)
T 1jdh_A 408 R-AHQDTQRRTSMGGTQQQFVEGV-RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485 (529)
T ss_dssp H-HHHHHC-----------CBTTB-CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred H-HhHHHHHHHhcccCchhhhccc-cHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHH
Confidence 4 356677788888876 32211 0111 1234444455667888888777777
Q ss_pred HHhhcCCCCChHH------HHHHHHHhhhcCCCChHHHhhHHHHHH
Q 006763 448 KLFLKKPTEGPQQ------MIQVVLNNATVETDNPDLRDRAYIYWR 487 (632)
Q Consensus 448 Kl~~~~p~e~~~~------~v~~ll~~~~~~s~~~dvrdRA~~y~~ 487 (632)
.+... +. ... .+..+.+. .++.|++||.+|.....
T Consensus 486 ~l~~~-~~--~~~~i~~~~~~~~L~~l--~~~~~~~v~~~a~~aL~ 526 (529)
T 1jdh_A 486 ELAQD-KE--AAEAIEAEGATAPLTEL--LHSRNEGVATYAAAVLF 526 (529)
T ss_dssp HHTTS-HH--HHHHHHHTTCHHHHHHG--GGCSSHHHHHHHHHHHH
T ss_pred HHhcC-HH--HHHHHHHcCChHHHHHH--hcCCCHHHHHHHHHHHH
Confidence 76532 11 111 12233333 24678999988876544
No 25
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.42 E-value=1.1e-10 Score=133.36 Aligned_cols=438 Identities=11% Similarity=0.079 Sum_probs=278.7
Q ss_pred HHHHHHHhhcCCCChHHHhHHHHHhcCCCchh-----hH--HHHHHHHHhhhCC-CChHHHHHHHHHHHHhhhhcc--cc
Q 006763 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----IT--EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINA--EL 115 (632)
Q Consensus 46 L~iNtl~kDl~~~np~ir~lALr~L~~I~~~e-----i~--~~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~~~p--~~ 115 (632)
-++..|.+=|+++++.+|..|+++|+++...+ +. +..++.+.+.|.+ .++.+|+.|+.++..+..... ..
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 93 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 93 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence 34666777777899999999999998875421 21 2567778888876 589999999999987654321 12
Q ss_pred ccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhc-cHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHH
Q 006763 116 VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAR 194 (632)
Q Consensus 116 v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~ 194 (632)
+.+.+.++.|.++|.+.++.|...|+.+|..++.........+ ....+..|++.+...++-.+...+++|..+...+++
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 173 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcH
Confidence 2234788999999999999999999999999987653221111 134567788888777665566666677766654444
Q ss_pred HHHH-----HHHHHHHhhcCCC-HHHHHHHHHHHHHhhhccCChHHHHHHHH-hcccchhhhcc-CchhHHHHHHHHHHH
Q 006763 195 EAEN-----IVERVTPRLQHAN-CAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINL 266 (632)
Q Consensus 195 ~~~~-----il~~v~~~L~~~n-~aVv~eaik~i~~~~~~i~~~~~~~~~~~-~~~~~L~~Lls-~~~niryvaL~~l~~ 266 (632)
.... .++.+..++++.+ ..++..+++++..+.. +++....++. .+.+.|+.++. .++.++..++..|..
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~---~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV---CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT---CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc---CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3332 3556667777654 4666778888776642 3333333322 34566777774 578999999999999
Q ss_pred HHhhCccc--hhcccce-eEeccCCchhHHHHHHHHHHHhcCc--ccHHH-----HHHHHHHhhhhc-C-HHHHHHHHHH
Q 006763 267 IVQRRPTI--LAHEIKV-FFCKYNDPIYVKMEKLEIMIKLASD--RNIDQ-----VLLEFKEYATEV-D-VDFVRKAVRA 334 (632)
Q Consensus 267 i~~~~p~~--~~~~~~~-f~~l~~dd~~Ik~~kL~lL~~L~n~--~Ni~~-----Iv~EL~~yl~~~-d-~~~~~~~i~a 334 (632)
++...+.. ...-+.. +..+.+++..+|..+..+|..|+.. +|... .++.|.+++.+. + .+++..++++
T Consensus 251 L~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp HGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 98655432 1111221 2345567789999999999999874 34443 466777777763 3 7899999999
Q ss_pred HHHHHHhhhhh--------HHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHhhCccc----HHHHHHHHHHhhccCChhh
Q 006763 335 IGRCAIKLERA--------AERCISVLLELIKIKV-NYVVQEAIIVIKDIFRRYPNT----YESIIATLCESLDTLDEPE 401 (632)
Q Consensus 335 Ig~la~k~~~~--------~~~~v~~Ll~ll~~~~-~~v~~e~i~~l~~ilr~~p~~----~~~ii~~L~~~l~~i~~p~ 401 (632)
++.++...+.. ....+..+++++.... ..+..+++..+.++....... ...+++.|++.+.+ .+++
T Consensus 331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~ 409 (644)
T 2z6h_A 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR-AHQD 409 (644)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHH-HHHH
T ss_pred HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhc-cchh
Confidence 99997543321 1235788899998765 478888888888887543222 12345666666643 2334
Q ss_pred HHHHHHHHHhc--ccCcc--------------------CCH-----HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCC
Q 006763 402 AKASMIWIIGE--YAERI--------------------DNA-----DELLESFLESFPEEPAQVQLQLLTATVKLFLKKP 454 (632)
Q Consensus 402 a~~~~iWiLGE--y~~~i--------------------~~~-----~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p 454 (632)
++..++|.++. +.+-. .+. ...+..+++-+...+++++.....++.++... +
T Consensus 410 vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~ 488 (644)
T 2z6h_A 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-K 488 (644)
T ss_dssp HTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-H
T ss_pred hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-H
Confidence 44555555554 22110 000 01234555556677888999988888887642 2
Q ss_pred CCChHHH------HHHHHHhhhcCCCChHHHhhHHHHHHHhcCC
Q 006763 455 TEGPQQM------IQVVLNNATVETDNPDLRDRAYIYWRLLSTD 492 (632)
Q Consensus 455 ~e~~~~~------v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~~ 492 (632)
+ .... +..+.+. . .+.|++||..|..-..-+..+
T Consensus 489 ~--~~~~i~~~g~l~~L~~l-l-~~~~~~vr~~A~~aL~~l~~~ 528 (644)
T 2z6h_A 489 E--AAEAIEAEGATAPLTEL-L-HSRNEGVATYAAAVLFRMSED 528 (644)
T ss_dssp H--HHHHHHHTTCHHHHHHH-T-TCSCHHHHHHHHHHHHHHTTT
T ss_pred H--HHHHHHHcCChhHHHHH-H-cCCCHHHHHHHHHHHHHHhcc
Confidence 1 2222 2233333 2 467999999998877766543
No 26
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.40 E-value=3.6e-11 Score=130.21 Aligned_cols=360 Identities=12% Similarity=0.123 Sum_probs=213.6
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHhcCC-CCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC----------------
Q 006763 12 TDVVNCMQTENLELKKLVYLYLINYAKS-QPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---------------- 74 (632)
Q Consensus 12 ~~vi~l~~s~d~~~Krl~YLyl~~~~~~-~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~---------------- 74 (632)
.+++..+.++|...|+-+--++..+... .|+........+.. .+.++.+|-+|...+.++.
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 4556667778888888888888886553 35544333444442 3346788877776655441
Q ss_pred --chhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhc-cc-cccccchHHHHHHHhcCC--ChhHHHHHHHHHHHHH
Q 006763 75 --VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AE-LVEDRGFLESLKDLISDN--NPMVVANAVAALAEIE 148 (632)
Q Consensus 75 --~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~-p~-~v~~~~~~~~L~~lL~D~--d~~Vv~~Al~aL~eI~ 148 (632)
.++.-+.+...+.+.+.+.++.| ++++.++..+...+ |+ ..+ ++++.|..++.+. |+.+...|+.+|..++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~--~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWP--ELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCT--THHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccH--HHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 34455566677777888888888 88888888888764 53 333 4778888888877 8888888888887776
Q ss_pred hcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHhh
Q 006763 149 ENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHA--NCAVVLSAVKMILQQM 226 (632)
Q Consensus 149 ~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~--n~aVv~eaik~i~~~~ 226 (632)
....+.. +. .....+++.+...+++. ++.|..+|++++..+.
T Consensus 159 ~~~~~~~-----------------------------~~-------~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 159 QDIDPEQ-----------------------------LQ-------DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (462)
T ss_dssp HHSCGGG-----------------------------TG-------GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT
T ss_pred HhCCchh-----------------------------hH-------hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 5431100 00 11224566666677776 7889999999988765
Q ss_pred hccCC---hHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhcccc-ee-----EeccCCchhHHHHH
Q 006763 227 ELITS---TDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VF-----FCKYNDPIYVKMEK 296 (632)
Q Consensus 227 ~~i~~---~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~~-~f-----~~l~~dd~~Ik~~k 296 (632)
..+.+ ......+ +.+.+..++ +.++++|-.+++.+..++..+|..|.+|+. .+ .+..+++..+|..+
T Consensus 203 ~~~~~~~~~~~~~~~---l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a 279 (462)
T 1ibr_B 203 EFTKANFDKESERHF---IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG 279 (462)
T ss_dssp TTTHHHHTSHHHHHH---HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHhhhhhHHHHH---HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 43211 1111111 233333444 357899999999999999999988877665 22 23456677899999
Q ss_pred HHHHHHhcCcc---------------------------cHHHHHHHHHHhhhhc-------CHHHHHHHHHHHHHHHHhh
Q 006763 297 LEIMIKLASDR---------------------------NIDQVLLEFKEYATEV-------DVDFVRKAVRAIGRCAIKL 342 (632)
Q Consensus 297 L~lL~~L~n~~---------------------------Ni~~Iv~EL~~yl~~~-------d~~~~~~~i~aIg~la~k~ 342 (632)
++.+..++... .+..+++.|...+.+. +...++.+...++.++..+
T Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~ 359 (462)
T 1ibr_B 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc
Confidence 99888887542 1234445454444322 1235555566666666555
Q ss_pred hhh-HHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCc-c----cHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCc
Q 006763 343 ERA-AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP-N----TYESIIATLCESLDTLDEPEAKASMIWIIGEYAER 416 (632)
Q Consensus 343 ~~~-~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p-~----~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~ 416 (632)
+.. ....+..+.+.+......+...++..+..+..... + ....+++.+...+.+ .++.++.+++|.+|.|+..
T Consensus 360 ~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHh
Confidence 421 11223333333443444455555555555543221 1 112344555554443 2355556666666655543
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.39 E-value=1.1e-10 Score=129.73 Aligned_cols=328 Identities=13% Similarity=0.110 Sum_probs=212.8
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHhhhhcc----ccccccchHHHHHHHhcCCC-hhHHHHHHHHHHHHHhcCCCCchh
Q 006763 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINA----ELVEDRGFLESLKDLISDNN-PMVVANAVAALAEIEENSSRPIFE 157 (632)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p----~~v~~~~~~~~L~~lL~D~d-~~Vv~~Al~aL~eI~~~~~~~~~~ 157 (632)
++.+.+.|.+.++.+|..|+.++.++....+ +.+...+.++.|.++|.+.+ +.+...|+.+|..++..++.....
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5677888899999999999999999976543 22223478899999999876 999999999999998754221111
Q ss_pred -ccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHH-----HHHHHHHhh-cCCCHHHHHHHHHHHHHhhhccC
Q 006763 158 -ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRL-QHANCAVVLSAVKMILQQMELIT 230 (632)
Q Consensus 158 -l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~-----il~~v~~~L-~~~n~aVv~eaik~i~~~~~~i~ 230 (632)
.....+..|+..+.+.++-.+...+..|..++..++..... .+..+...+ ++.+..+...|+.++.++...-+
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 11235677888888878777888888888777554433322 355666777 66788999999999988754311
Q ss_pred ChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCccchhc-----ccc-eeEeccCCchhHHHHHHHHHHHh
Q 006763 231 STDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAH-----EIK-VFFCKYNDPIYVKMEKLEIMIKL 303 (632)
Q Consensus 231 ~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~~~~~-----~~~-~f~~l~~dd~~Ik~~kL~lL~~L 303 (632)
.... .....+.+.|+.++. .+++++.-++..|..++...+...+. -+. .+.++.+.+..++..++..|..+
T Consensus 236 ~~~~--~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 236 QPSF--EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp CCCH--HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCcH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 2211 223345667777774 68899999999999888654432111 111 22345555677888888888888
Q ss_pred cCcc--cHHH-----HHHHHHHhhhhc-CHHHHHHHHHHHHHHHHhhhhhHH-----HHHHHHHHHHhhhchhhHHHHHH
Q 006763 304 ASDR--NIDQ-----VLLEFKEYATEV-DVDFVRKAVRAIGRCAIKLERAAE-----RCISVLLELIKIKVNYVVQEAII 370 (632)
Q Consensus 304 ~n~~--Ni~~-----Iv~EL~~yl~~~-d~~~~~~~i~aIg~la~k~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~ 370 (632)
+... +... +++.|...+.+. +..+++.++.+|+.++...+.... ..+..|++++......+..+++.
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 393 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW 393 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 7532 2222 356666777766 778888888888887753222111 23556677776666666667777
Q ss_pred HHHHHHhh-CcccHHH-----HHHHHHHhhccCChhhHHHHHHHHHhcc
Q 006763 371 VIKDIFRR-YPNTYES-----IIATLCESLDTLDEPEAKASMIWIIGEY 413 (632)
Q Consensus 371 ~l~~ilr~-~p~~~~~-----ii~~L~~~l~~i~~p~a~~~~iWiLGEy 413 (632)
.+.++... .|+...+ ++..|++.+.. .+++++..++|.++..
T Consensus 394 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l 441 (528)
T 4b8j_A 394 AISNATSGGSHDQIKYLVSEGCIKPLCDLLIC-PDIRIVTVCLEGLENI 441 (528)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHH
Confidence 77776665 3433222 34445555543 3445555555555544
No 28
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.35 E-value=2.4e-10 Score=132.21 Aligned_cols=368 Identities=14% Similarity=0.137 Sum_probs=250.1
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHH----HHHHHHhhcCCCChHHHhHHHHHhcCCCc--------hh
Q 006763 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL----AVNTFVKDSQDPNPLIRALAVRTMGCIRV--------DK 77 (632)
Q Consensus 10 lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL----~iNtl~kDl~~~np~ir~lALr~L~~I~~--------~e 77 (632)
..+.++.+++|++..+++-++-++...+.. ++..-. -+..|.+=+++.++.+|..|+-.||++.. +.
T Consensus 291 ~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~ 369 (810)
T 3now_A 291 ILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRP 369 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCS
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccc
Confidence 456778899999999999999999986543 553322 23556666678889999999999998852 12
Q ss_pred h----HHHHHHHHHhhhCCC--ChHHHHHHHHHHHHhhhhcc---ccccccchHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 006763 78 I----TEYLCDPLQRCLKDD--DPYVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (632)
Q Consensus 78 i----~~~l~~~v~~~L~d~--~pyVRK~A~~al~kl~~~~p---~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~ 148 (632)
+ ++.+++.+.++|.++ ++-+|+.|+.|+..+-...+ +.+.+.++++.|..+|+..++.++..|+.+|..|.
T Consensus 370 ~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt 449 (810)
T 3now_A 370 FGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLC 449 (810)
T ss_dssp STTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred hhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence 2 467888999999997 89999999999998865332 34545689999999999999999999999999998
Q ss_pred hcCCCC-----c-----h-----------------------hccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHH
Q 006763 149 ENSSRP-----I-----F-----------------------EITSHTLSKLLTALNECTEWGQVFILDALSRYKAADARE 195 (632)
Q Consensus 149 ~~~~~~-----~-----~-----------------------~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~ 195 (632)
.....+ . + -+....+..|...+...++=.|.....+|..+.. +++.
T Consensus 450 ~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~ 528 (810)
T 3now_A 450 NAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKEL 528 (810)
T ss_dssp TCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHH
T ss_pred CCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHH
Confidence 643110 0 0 0011234555566666778888888888887763 4443
Q ss_pred HHH-----HHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHH--HHHHHhcccchhhhccCc--hhHHHHHHHHHHH
Q 006763 196 AEN-----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVV--RNLCKKMAPPLVTLLSAE--PEIQYVALRNINL 266 (632)
Q Consensus 196 ~~~-----il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~--~~~~~~~~~~L~~Lls~~--~niryvaL~~l~~ 266 (632)
... .+..+..+|++.+..+...|+.++.++.-. .+++.. .+....++++|+.|++++ ...++-++..|..
T Consensus 529 r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~-~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~N 607 (810)
T 3now_A 529 RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGIT-INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTN 607 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcC-CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 333 355677788888888899999999876532 244431 011124678899998643 3456788999988
Q ss_pred HHhhCcc----chhc-ccc-eeEeccCCchhHHHHHHHHHHHhcCccc-HHH------HHHHHHHhhhhcCHHHHHHHHH
Q 006763 267 IVQRRPT----ILAH-EIK-VFFCKYNDPIYVKMEKLEIMIKLASDRN-IDQ------VLLEFKEYATEVDVDFVRKAVR 333 (632)
Q Consensus 267 i~~~~p~----~~~~-~~~-~f~~l~~dd~~Ik~~kL~lL~~L~n~~N-i~~------Iv~EL~~yl~~~d~~~~~~~i~ 333 (632)
|+...++ ++.. -+. ...++.+++..|++.++++|..|+.... ... .++-|..++...|.+.++.+..
T Consensus 608 La~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ 687 (810)
T 3now_A 608 LASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAG 687 (810)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHH
Confidence 8865432 1221 122 2344556677888999999888875422 222 3445556777778888888888
Q ss_pred HHHHHHHhhhhhH------HHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCc
Q 006763 334 AIGRCAIKLERAA------ERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP 380 (632)
Q Consensus 334 aIg~la~k~~~~~------~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p 380 (632)
+|+.++...+... ..++..|++++..+...+..+++..+.++....+
T Consensus 688 ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~ 740 (810)
T 3now_A 688 ALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGE 740 (810)
T ss_dssp HHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCH
Confidence 8888876433222 2344566677666666666666666666665433
No 29
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.34 E-value=5.3e-09 Score=116.11 Aligned_cols=339 Identities=16% Similarity=0.147 Sum_probs=232.2
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhc--CCCCcHHHH----HHHHHHhhcC-CCChHHHhHHHHHhcCCC--chhh
Q 006763 8 SSLFTDVVNCMQTENLELKKLVYLYLINYA--KSQPDLAIL----AVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKI 78 (632)
Q Consensus 8 s~lf~~vi~l~~s~d~~~Krl~YLyl~~~~--~~~~el~lL----~iNtl~kDl~-~~np~ir~lALr~L~~I~--~~ei 78 (632)
.+-..++++.+.|+|.+.+.-+--.+..++ +.+|..-.+ ++..|.+-|. +.++.++-.|.++|++|. +++.
T Consensus 56 ~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 56 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 345789999999999999888877777654 345542222 3567888886 457899988888888873 4444
Q ss_pred HHH-----HHHHHHhhhCCCChHHHHHHHHHHHHhhhhccc---cccccchHHHHHHHhcCCCh-----hHHHHHHHHHH
Q 006763 79 TEY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP-----MVVANAVAALA 145 (632)
Q Consensus 79 ~~~-----l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~---~v~~~~~~~~L~~lL~D~d~-----~Vv~~Al~aL~ 145 (632)
... .+|.+.++|.++++.||..|+.|+..+..-+|+ .+...+.++.|..+|.+.+. .++.+++.++.
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 215 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 333 468899999999999999999999999876554 34445778889999986553 45678888888
Q ss_pred HHHhcC-CCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHH-----HHHHHHHhhcCCCHHHHHHHH
Q 006763 146 EIEENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAV 219 (632)
Q Consensus 146 eI~~~~-~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~-----il~~v~~~L~~~n~aVv~eai 219 (632)
.++... +...+......+..|.+.+...++..+......|..+...+.+.... ++..+..+|++.+..|...++
T Consensus 216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al 295 (510)
T 3ul1_B 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295 (510)
T ss_dssp HHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHH
Confidence 887654 22233344556677777777888888888888888777555443332 456777889999999999999
Q ss_pred HHHHHhhhccCChHHHHHHH-Hhcccchhhhcc-CchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHH
Q 006763 220 KMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKL 297 (632)
Q Consensus 220 k~i~~~~~~i~~~~~~~~~~-~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL 297 (632)
+++.++.. .++.....+. ..+.++|..+++ .++++|..+...|..|+...+... .
T Consensus 296 ~aL~nl~~--~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~------------------~--- 352 (510)
T 3ul1_B 296 RAIGNIVT--GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI------------------Q--- 352 (510)
T ss_dssp HHHHHHTT--SCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHH------------------H---
T ss_pred HHHHHhhc--CCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHH------------------H---
Confidence 99988643 2333332222 245566677774 567888888888877764322111 0
Q ss_pred HHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHhhhchhhHHHHHHH
Q 006763 298 EIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA------ERCISVLLELIKIKVNYVVQEAIIV 371 (632)
Q Consensus 298 ~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~------~~~v~~Ll~ll~~~~~~v~~e~i~~ 371 (632)
.+.+. .+++.|...+.+.+.+++++++.+|+.++..-.... .-++..|+++|......+...++..
T Consensus 353 ----~v~~~----g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~a 424 (510)
T 3ul1_B 353 ----QVVNH----GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 424 (510)
T ss_dssp ----HHHHT----THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred ----HHHhc----CCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 00111 256666777777888899999999988886532211 1346778888887777777777777
Q ss_pred HHHHHh
Q 006763 372 IKDIFR 377 (632)
Q Consensus 372 l~~ilr 377 (632)
+.+|++
T Consensus 425 L~nil~ 430 (510)
T 3ul1_B 425 ISNIFQ 430 (510)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777665
No 30
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.34 E-value=1.9e-11 Score=124.35 Aligned_cols=251 Identities=15% Similarity=0.102 Sum_probs=159.9
Q ss_pred HHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHH
Q 006763 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (632)
Q Consensus 47 ~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~ 126 (632)
.++.+.+.|.|+|+.+|..|+++|+.++.++. ++.+.+++.|+++.||..|+.++.++... ++.+. .+++.+.
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~----~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~~~~--~l~~~L~ 96 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQDA----VRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCED--NVFNILN 96 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHH----HHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHH--HHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCchH----HHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccch--HHHHHHH
Confidence 46788999999999999999999999997665 45577889999999999999999987532 22232 2555665
Q ss_pred -HHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHH
Q 006763 127 -DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP 205 (632)
Q Consensus 127 -~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~ 205 (632)
.+++|.++.|..+|+.+|..+....+. . ...+++.+..
T Consensus 97 ~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~-------------------------------------~~~~~~~L~~ 135 (280)
T 1oyz_A 97 NMALNDKSACVRATAIESTAQRCKKNPI----Y-------------------------------------SPKIVEQSQI 135 (280)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHCGG----G-------------------------------------HHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCCc----c-------------------------------------cHHHHHHHHH
Confidence 367899999999999999888643310 0 0123344444
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhcccceeEe
Q 006763 206 RLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFC 284 (632)
Q Consensus 206 ~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~ 284 (632)
.+++.++.|...++..+..+ .+++ ..+.|..++ +.++.+|+.++..|..+....+..+.... .+
T Consensus 136 ~l~d~~~~vR~~a~~aL~~~----~~~~--------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~---~~ 200 (280)
T 1oyz_A 136 TAFDKSTNVRRATAFAISVI----NDKA--------TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFV---EM 200 (280)
T ss_dssp HTTCSCHHHHHHHHHHHHTC-------C--------CHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHH---HH
T ss_pred HhhCCCHHHHHHHHHHHHhc----CCHH--------HHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHH---HH
Confidence 56666666666666666543 1221 233344444 34566777777766665332333322111 12
Q ss_pred ccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh-chh
Q 006763 285 KYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK-VNY 363 (632)
Q Consensus 285 l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~-~~~ 363 (632)
+.+++..+|..++..|..+.++..+..++..| .+. +++..++.++|.++. ..++..|.+++... .+.
T Consensus 201 l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l----~d~--~vr~~a~~aL~~i~~------~~~~~~L~~~l~~~~~~~ 268 (280)
T 1oyz_A 201 LQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL----KKN--TVYDDIIEAAGELGD------KTLLPVLDTMLYKFDDNE 268 (280)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHH----TSS--SCCHHHHHHHHHHCC------GGGHHHHHHHHTTSSCCH
T ss_pred hcCCCHHHHHHHHHHHHHhCCHhhHHHHHHHh----cCc--cHHHHHHHHHHhcCc------hhhhHHHHHHHhcCCCcH
Confidence 34566788888888888888776555544443 332 377778888887764 24566677776543 334
Q ss_pred hHHHHHHHH
Q 006763 364 VVQEAIIVI 372 (632)
Q Consensus 364 v~~e~i~~l 372 (632)
+..+++.++
T Consensus 269 ~~~~~~~~l 277 (280)
T 1oyz_A 269 IITSAIDKL 277 (280)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444454444
No 31
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.31 E-value=4.4e-10 Score=124.16 Aligned_cols=434 Identities=12% Similarity=0.050 Sum_probs=272.9
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHH-H----HHHHHHHhhcC-CCChHHHhHHHHHhcCCCch-hhHH--
Q 006763 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLA-I----LAVNTFVKDSQ-DPNPLIRALAVRTMGCIRVD-KITE-- 80 (632)
Q Consensus 10 lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~-l----L~iNtl~kDl~-~~np~ir~lALr~L~~I~~~-ei~~-- 80 (632)
..+..++++.+++...+.-+-.++..++..++... + -++..+.+-+. ++++.+|..|.++|.++... +...
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 46777889999999999999888888886544311 1 13455555554 35888998888888887532 2222
Q ss_pred ---HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccc---ccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCC
Q 006763 81 ---YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (632)
Q Consensus 81 ---~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~---v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~ 154 (632)
-.++.+.+++.+.++-||+.|+.++.++...+++. +.+.+.++.|.++|.+.++.+...+..+|..+...++..
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~ 177 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHH
Confidence 35678999999999999999999999998775542 323578899999999999999998888888776533211
Q ss_pred chhc-cHHHHHHHHHHhhccCh-hhHHHHHHHHhccc--cCCHHHH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhc
Q 006763 155 IFEI-TSHTLSKLLTALNECTE-WGQVFILDALSRYK--AADAREA--ENIVERVTPRLQHANCAVVLSAVKMILQQMEL 228 (632)
Q Consensus 155 ~~~l-~~~~~~~Ll~~l~~~~e-w~qi~lL~lL~~y~--~~~~~~~--~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~ 228 (632)
...+ ....+..|+..+.+.++ ..+.....+|..+. +...... ...++.+...+++.++.++..++.++.++...
T Consensus 178 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcC
Confidence 1111 11234555565554433 22323334433333 2211111 13567777888888999999999999887543
Q ss_pred cCChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCccc---hhcc--cc-eeEec--cCCchhHHHHHHHH
Q 006763 229 ITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI---LAHE--IK-VFFCK--YNDPIYVKMEKLEI 299 (632)
Q Consensus 229 i~~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~~---~~~~--~~-~f~~l--~~dd~~Ik~~kL~l 299 (632)
....... ..+.+.|+.++. .+++++..+...|..+....++. +... +. .+..+ .+++..++..++..
T Consensus 258 ~~~~~~~----~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~ 333 (529)
T 1jdh_A 258 ATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333 (529)
T ss_dssp CTTCSCC----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChhhHHH----HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence 2221111 134566777774 68999999999999998765422 1111 11 11122 23447899999999
Q ss_pred HHHhcCc--cc---HHH-----HHHHHHHhhhhcC-HHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHhhhchhh
Q 006763 300 MIKLASD--RN---IDQ-----VLLEFKEYATEVD-VDFVRKAVRAIGRCAIKLERAA----ERCISVLLELIKIKVNYV 364 (632)
Q Consensus 300 L~~L~n~--~N---i~~-----Iv~EL~~yl~~~d-~~~~~~~i~aIg~la~k~~~~~----~~~v~~Ll~ll~~~~~~v 364 (632)
|..++.. ++ ... .++.|...+.+.+ ..+++.++.+++.++..-.... ...+..+++++......+
T Consensus 334 L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHH
Confidence 9999864 21 112 3556777777655 5899999999999986322111 134677888887654433
Q ss_pred HHH----------------------HHHHHHHHHhhCcccHH-----HHHHHHHHhhccCChhhHHHHHHHHHhcccCcc
Q 006763 365 VQE----------------------AIIVIKDIFRRYPNTYE-----SIIATLCESLDTLDEPEAKASMIWIIGEYAERI 417 (632)
Q Consensus 365 ~~e----------------------~i~~l~~ilr~~p~~~~-----~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i 417 (632)
..+ ++..+..+.+ .++.+. .+++.|++.+.+ ..++++..+.|.+++.+..-
T Consensus 414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll~~-~~~~v~~~a~~~l~~l~~~~ 491 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYS-PIENIQRVAAGVLCELAQDK 491 (529)
T ss_dssp C-----------CBTTBCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc-CchHHHHHhccCCccHHHHHHcC-CchHHHHHHHHHHHHHhcCH
Confidence 332 3334444432 333222 235677777765 35678889999999877431
Q ss_pred CCHH-----HHHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 006763 418 DNAD-----ELLESFLESFPEEPAQVQLQLLTATVKL 449 (632)
Q Consensus 418 ~~~~-----~~l~~l~~~f~~e~~~vq~~iLta~~Kl 449 (632)
+... ..++.+.+-....+++|+.....++.++
T Consensus 492 ~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 492 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 1111 1123333334567888888888777765
No 32
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.28 E-value=3.9e-09 Score=122.08 Aligned_cols=401 Identities=12% Similarity=0.085 Sum_probs=276.4
Q ss_pred hHHHHH-hhcCCCcchHHHHHHHHHHhcCCCCcHHHH------HHHHHHhhcCCCChHHHhHHHHHhcCCCch-----hh
Q 006763 11 FTDVVN-CMQTENLELKKLVYLYLINYAKSQPDLAIL------AVNTFVKDSQDPNPLIRALAVRTMGCIRVD-----KI 78 (632)
Q Consensus 11 f~~vi~-l~~s~d~~~Krl~YLyl~~~~~~~~el~lL------~iNtl~kDl~~~np~ir~lALr~L~~I~~~-----ei 78 (632)
+-+.++ .+...+..-|-.+.-+++.++.-.+|..-- ++..|.+=++|+++.++-.|+..++.+... -+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I 327 (810)
T 3now_A 248 IDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKAL 327 (810)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTT
T ss_pred HHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 334444 456788888888999999999988885443 346677888899999998888888777543 23
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhh---ccc--cccc---cchHHHHHHHhcCC--ChhHHHHHHHHHHHHH
Q 006763 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI---NAE--LVED---RGFLESLKDLISDN--NPMVVANAVAALAEIE 148 (632)
Q Consensus 79 ~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~---~p~--~v~~---~~~~~~L~~lL~D~--d~~Vv~~Al~aL~eI~ 148 (632)
.+.-++.+.+++.+.++.+|..|+.++.|+-.. ++. .+.+ ..+++.+.++|.+. |+.+..+|+-+|.++.
T Consensus 328 ~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS 407 (810)
T 3now_A 328 CEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLT 407 (810)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHT
T ss_pred HHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 334458999999999999999999999999642 332 2221 24577888898877 8999999999999997
Q ss_pred hcCC-CCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCH----------------------------HHH---
Q 006763 149 ENSS-RPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA----------------------------REA--- 196 (632)
Q Consensus 149 ~~~~-~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~----------------------------~~~--- 196 (632)
.... ...+......+..|+..++..++=.|-..+..|......++ +..
T Consensus 408 ~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r 487 (810)
T 3now_A 408 LDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKR 487 (810)
T ss_dssp TSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHH
Confidence 5431 11122335677888888876666677777777766553210 001
Q ss_pred -H-----HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhhc-cCchhHHHHHHHHHHHHH
Q 006763 197 -E-----NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLL-SAEPEIQYVALRNINLIV 268 (632)
Q Consensus 197 -~-----~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~-~~~~~~L~~Ll-s~~~niryvaL~~l~~i~ 268 (632)
. ..+..+..+|++.++.|.-+|++++.++.. +++....++ ..++++|+.++ ++++..|..+...|..|+
T Consensus 488 ~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~---d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~ 564 (810)
T 3now_A 488 ITVLANEGITTALCALAKTESHNSQELIARVLNAVCG---LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG 564 (810)
T ss_dssp HHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHh
Confidence 1 134566678899999999999999998753 444333332 23567888888 467899999999999987
Q ss_pred hh-Cccc-hhc-----ccce-eEeccCC-chhHHHHHHHHHHHhcCc--ccHHHHH-----HHHHHhhhhcCHHHHHHHH
Q 006763 269 QR-RPTI-LAH-----EIKV-FFCKYND-PIYVKMEKLEIMIKLASD--RNIDQVL-----LEFKEYATEVDVDFVRKAV 332 (632)
Q Consensus 269 ~~-~p~~-~~~-----~~~~-f~~l~~d-d~~Ik~~kL~lL~~L~n~--~Ni~~Iv-----~EL~~yl~~~d~~~~~~~i 332 (632)
.. +|.. |.. -+.. +..+.++ +...+..++..|..|+.. +|...|+ +.|.+++.+.+..+++.+.
T Consensus 565 ~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~ 644 (810)
T 3now_A 565 ITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAA 644 (810)
T ss_dssp HHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHH
T ss_pred cCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHH
Confidence 64 4543 211 1111 2234444 345567899999999864 5555554 4677888888888999999
Q ss_pred HHHHHHHHhhhhh---H--HHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHH------HHHHHHHHhhccCChhh
Q 006763 333 RAIGRCAIKLERA---A--ERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYE------SIIATLCESLDTLDEPE 401 (632)
Q Consensus 333 ~aIg~la~k~~~~---~--~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~------~ii~~L~~~l~~i~~p~ 401 (632)
++|+.++..-..- . ...+..|+.++......+..++...+.++...+++... ..++.|++.+.+ .+.+
T Consensus 645 ~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s-~d~~ 723 (810)
T 3now_A 645 QCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN-PSPA 723 (810)
T ss_dssp HHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC-SSHH
T ss_pred HHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC-CCHH
Confidence 9999988532110 0 13567788888887777888888888888765554333 345567776654 5677
Q ss_pred HHHHHHHHHhcccC
Q 006763 402 AKASMIWIIGEYAE 415 (632)
Q Consensus 402 a~~~~iWiLGEy~~ 415 (632)
.+..++|.++....
T Consensus 724 vq~~A~~aL~NL~~ 737 (810)
T 3now_A 724 VQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 88888999887654
No 33
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.26 E-value=2.3e-09 Score=121.94 Aligned_cols=389 Identities=13% Similarity=0.155 Sum_probs=251.5
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCC--CchhhHHHHHHHHHhhhCCCChHHHHHH
Q 006763 24 ELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI--RVDKITEYLCDPLQRCLKDDDPYVRKTA 101 (632)
Q Consensus 24 ~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I--~~~ei~~~l~~~v~~~L~d~~pyVRK~A 101 (632)
.++|+.|+.+.- ..-+....-+++ =++++|...|-++--.++.+ ..++.+-.++..+++-++|++|++|--|
T Consensus 58 ~l~Kli~l~~~G--~d~s~~~~~vvk----l~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lA 131 (621)
T 2vgl_A 58 YVCKLLFIFLLG--HDIDFGHMEAVN----LLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLA 131 (621)
T ss_dssp HHHHHHHHHHHS--CCCCSCHHHHHH----GGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHcC--CCCchhHHHHHH----HhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 378888886643 333444443443 46788888876655555555 3468888889999999999999999999
Q ss_pred HHHHHHhhhhccccccccchHHHHHHHh--cCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHH
Q 006763 102 AICVAKLYDINAELVEDRGFLESLKDLI--SDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQV 179 (632)
Q Consensus 102 ~~al~kl~~~~p~~v~~~~~~~~L~~lL--~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi 179 (632)
+.++.++. .|+.++. +.+.+.++| .|.+|-|.-.|+.++..+...++... .. ...+.++.+.|.+.++-.+.
T Consensus 132 Lr~L~~i~--~~e~~~~--l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~-~~-~~~~~~l~~lL~d~d~~V~~ 205 (621)
T 2vgl_A 132 LHCIANVG--SREMAEA--FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV-PM-GDWTSRVVHLLNDQHLGVVT 205 (621)
T ss_dssp HHHHHHHC--CHHHHHH--HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC-CC-CSCHHHHHHHTTCSCHHHHH
T ss_pred HHHhhccC--CHHHHHH--HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc-Cc-hhHHHHHHHHhCCCCccHHH
Confidence 99999984 5777763 778899999 99999999999999999988765321 10 02345566667788887777
Q ss_pred HHHHHHhccccCCHHHHHH----HHHHHHHhhcC--C-----------CHHHHHHHHHHHHHhhhccCChHHHHHHHHhc
Q 006763 180 FILDALSRYKAADAREAEN----IVERVTPRLQH--A-----------NCAVVLSAVKMILQQMELITSTDVVRNLCKKM 242 (632)
Q Consensus 180 ~lL~lL~~y~~~~~~~~~~----il~~v~~~L~~--~-----------n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~ 242 (632)
..+.++...++.+++.... +++.+..++.. . ++=.....++++..+.+ .++++..+.+.. +
T Consensus 206 ~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~-~~d~~~~~~l~~-~ 283 (621)
T 2vgl_A 206 AATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP-PEDPAVRGRLTE-C 283 (621)
T ss_dssp HHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSS-CSSHHHHHHHHH-H
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCC-CCCHHHHHHHHH-H
Confidence 7777777776655543222 22322222211 1 56666666777665432 123443332211 1
Q ss_pred ccchhhh---------c-cC--chhHHHHHHHHHHHHHhhCccchhccccee-EeccCCchhHHHHHHHHHHHhcCccc-
Q 006763 243 APPLVTL---------L-SA--EPEIQYVALRNINLIVQRRPTILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASDRN- 308 (632)
Q Consensus 243 ~~~L~~L---------l-s~--~~niryvaL~~l~~i~~~~p~~~~~~~~~f-~~l~~dd~~Ik~~kL~lL~~L~n~~N- 308 (632)
...++.. + ++ .+-+-|-+.+.+..+. ..+++...-...+ ..+.+.+..+|..+|+.|..++....
T Consensus 284 L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~ 362 (621)
T 2vgl_A 284 LETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS 362 (621)
T ss_dssp HHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc
Confidence 1111111 1 11 2256666666666553 2334433322221 11335667999999999999987642
Q ss_pred ---HHHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHH
Q 006763 309 ---IDQVLLEFKEYAT-EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYE 384 (632)
Q Consensus 309 ---i~~Iv~EL~~yl~-~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~ 384 (632)
+......+...+. +.|..+++.++..+..++.. ...+..+..|.+.+......+..+++..+..+..++|...+
T Consensus 363 ~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~ 440 (621)
T 2vgl_A 363 HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYT 440 (621)
T ss_dssp HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 2333444455566 88999999999988888754 45678899999999988888899999999999989988888
Q ss_pred HHHHHHHHhhccC---ChhhHHHHHHHHHhcccCccCCHHHHHHHHhhhCC
Q 006763 385 SIIATLCESLDTL---DEPEAKASMIWIIGEYAERIDNADELLESFLESFP 432 (632)
Q Consensus 385 ~ii~~L~~~l~~i---~~p~a~~~~iWiLGEy~~~i~~~~~~l~~l~~~f~ 432 (632)
..+..|.+.+..- -..++...+.-++.+..+. -.+.+..+++.+.
T Consensus 441 ~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~---~~~~~~~l~~~l~ 488 (621)
T 2vgl_A 441 WYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDV---QGYAAKTVFEALQ 488 (621)
T ss_dssp HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSC---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhH---HHHHHHHHHHHHc
Confidence 8888888777531 1234445555566554332 2344555554443
No 34
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.25 E-value=6.8e-09 Score=118.46 Aligned_cols=437 Identities=13% Similarity=0.076 Sum_probs=277.2
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHH-----HHHHHHHhhcCC-CChHHHhHHHHHhcCCCch-hhHH--
Q 006763 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAI-----LAVNTFVKDSQD-PNPLIRALAVRTMGCIRVD-KITE-- 80 (632)
Q Consensus 10 lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~l-----L~iNtl~kDl~~-~np~ir~lALr~L~~I~~~-ei~~-- 80 (632)
..+..++++.+++..+|.-+-..+.+++...+.... -++..+.+-|.+ +++.+|..|+++|.++... +...
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 467778899999999999999999999887654221 134556666654 4888888888888776432 2211
Q ss_pred ---HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccc---ccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCC
Q 006763 81 ---YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (632)
Q Consensus 81 ---~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~---v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~ 154 (632)
..++.+.+++.+.++.||+.|+.++.++...+++. +.+.+.++.|.++|.+.++.+...++.+|..++..+...
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHH
Confidence 35688999999999999999999999998765432 223578899999999999999988888888887533211
Q ss_pred chhc-cHHHHHHHHHHhhccC-h---hhHHHHHHHHhccccCCHHHH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q 006763 155 IFEI-TSHTLSKLLTALNECT-E---WGQVFILDALSRYKAADAREA--ENIVERVTPRLQHANCAVVLSAVKMILQQME 227 (632)
Q Consensus 155 ~~~l-~~~~~~~Ll~~l~~~~-e---w~qi~lL~lL~~y~~~~~~~~--~~il~~v~~~L~~~n~aVv~eaik~i~~~~~ 227 (632)
...+ ....+..|++.+...+ + |.-..+|..|.. .+...... ...+..+..++++.+..++..++.++.++..
T Consensus 175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 1111 1123556666665543 2 444445555543 22211111 1246677788888899999999999988754
Q ss_pred ccCChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCccc----hhcc-cc-eeEecc--CCchhHHHHHHH
Q 006763 228 LITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI----LAHE-IK-VFFCKY--NDPIYVKMEKLE 298 (632)
Q Consensus 228 ~i~~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~~----~~~~-~~-~f~~l~--~dd~~Ik~~kL~ 298 (632)
........ ..+.+.|+.++. .+++++..+...|..|....+.. ++.. +. .+..+. ++...++..++.
T Consensus 254 ~~~~~~~~----~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~ 329 (644)
T 2z6h_A 254 AATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 329 (644)
T ss_dssp GCTTCCSC----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchhhhhh----hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHH
Confidence 32121111 134566777774 68899999999999998765431 1111 11 112222 233689999999
Q ss_pred HHHHhcCcc--c--HH------HHHHHHHHhhhhcC-HHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHhhhch-
Q 006763 299 IMIKLASDR--N--ID------QVLLEFKEYATEVD-VDFVRKAVRAIGRCAIKLERA----AERCISVLLELIKIKVN- 362 (632)
Q Consensus 299 lL~~L~n~~--N--i~------~Iv~EL~~yl~~~d-~~~~~~~i~aIg~la~k~~~~----~~~~v~~Ll~ll~~~~~- 362 (632)
.|..++... + .+ ..++.|.+.+.+.+ ..+++.++.+++.++..-... ....+..|++++.....
T Consensus 330 aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~ 409 (644)
T 2z6h_A 330 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 409 (644)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchh
Confidence 999998632 1 11 25667777777654 689999999999988532111 12356777888776432
Q ss_pred ---------------------hhHHHHHHHHHHHHhhCcccHH-----HHHHHHHHhhccCChhhHHHHHHHHHhcccCc
Q 006763 363 ---------------------YVVQEAIIVIKDIFRRYPNTYE-----SIIATLCESLDTLDEPEAKASMIWIIGEYAER 416 (632)
Q Consensus 363 ---------------------~v~~e~i~~l~~ilr~~p~~~~-----~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~ 416 (632)
.+...++..+..+.+ +++.+. .+++.|++.+.+ ..++++..++|.+++.+..
T Consensus 410 vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~ 487 (644)
T 2z6h_A 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYS-PIENIQRVAAGVLCELAQD 487 (644)
T ss_dssp HTTC----------CCSSCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHHTS
T ss_pred hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcC
Confidence 233334445554443 232222 246677777765 4567888889998887643
Q ss_pred cCCHHH-----HHHHHhhhCCCCCHHHHHHHHHHHHHHhhcC
Q 006763 417 IDNADE-----LLESFLESFPEEPAQVQLQLLTATVKLFLKK 453 (632)
Q Consensus 417 i~~~~~-----~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~ 453 (632)
-+.... .++.+.+-...++++||.....++.++....
T Consensus 488 ~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 488 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 111110 1233344445667777777777777765433
No 35
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.20 E-value=1.9e-08 Score=112.08 Aligned_cols=330 Identities=14% Similarity=0.130 Sum_probs=223.5
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhcC--CCCcHHHH----HHHHHHhhcC-CCChHHHhHHHHHhcCCC--chhh
Q 006763 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAK--SQPDLAIL----AVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKI 78 (632)
Q Consensus 8 s~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~--~~~el~lL----~iNtl~kDl~-~~np~ir~lALr~L~~I~--~~ei 78 (632)
.....++++.+.|+|.+.+.-+.-++..++. .+|..-.+ ++..|.+-|. +.++.++-.|..+|++|. +++-
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 3457889999999999988877777766542 34432111 3456777774 567889988888888874 3333
Q ss_pred HHH-----HHHHHHhhhCCCChHHHHHHHHHHHHhhhhccc---cccccchHHHHHHHhcCCCh-----hHHHHHHHHHH
Q 006763 79 TEY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP-----MVVANAVAALA 145 (632)
Q Consensus 79 ~~~-----l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~---~v~~~~~~~~L~~lL~D~d~-----~Vv~~Al~aL~ 145 (632)
... .+|.+.+++.++++.||..|+.|+..+...+|+ .+...+.++.|..+|.+.+. .++.+++.++.
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 234 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 234 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence 222 468899999999999999999999999876654 33345677888898876553 45678888888
Q ss_pred HHHhcC-CCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHH-----HHHHHHHHhhcCCCHHHHHHHH
Q 006763 146 EIEENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAV 219 (632)
Q Consensus 146 eI~~~~-~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~-----~il~~v~~~L~~~n~aVv~eai 219 (632)
.++... +...+......+..|...+...++..+......|......+.+... .++..+..+|.+.+..|...|+
T Consensus 235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~ 314 (529)
T 3tpo_A 235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314 (529)
T ss_dssp HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHH
Confidence 887654 2223344455667777777788888888777788776655443332 2456777889999999999999
Q ss_pred HHHHHhhhccCChHHHHHHH-Hhcccchhhhcc-CchhHHHHHHHHHHHHHhhCccchh----cc-cc-eeEeccCCchh
Q 006763 220 KMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA----HE-IK-VFFCKYNDPIY 291 (632)
Q Consensus 220 k~i~~~~~~i~~~~~~~~~~-~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~~~~----~~-~~-~f~~l~~dd~~ 291 (632)
+++.++.. .++.....+. ..+.++|..+++ .++++|.-+...|..|+...+.... .. +. .+.++.+.+..
T Consensus 315 ~aL~nl~~--~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 392 (529)
T 3tpo_A 315 RAIGNIVT--GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 392 (529)
T ss_dssp HHHHHHTT--SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHc--cchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH
Confidence 99988743 2333332222 345677888884 6889999999999998876543221 11 11 12345566677
Q ss_pred HHHHHHHHHHHhcCcc---cHHHH-----HHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 006763 292 VKMEKLEIMIKLASDR---NIDQV-----LLEFKEYATEVDVDFVRKAVRAIGRCA 339 (632)
Q Consensus 292 Ik~~kL~lL~~L~n~~---Ni~~I-----v~EL~~yl~~~d~~~~~~~i~aIg~la 339 (632)
+|..+.-.|..++... ++..+ ++-|...+...|.+++..++.+|..+.
T Consensus 393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7887777777776433 33332 445666777777777776666665554
No 36
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.19 E-value=3.1e-09 Score=117.98 Aligned_cols=370 Identities=12% Similarity=0.190 Sum_probs=206.2
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHhhhh--cc--ccccccchHHHHHHHhc-CCChhHHHHHHHHHHHHHhcCCCCchh
Q 006763 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDI--NA--ELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPIFE 157 (632)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~A~~al~kl~~~--~p--~~v~~~~~~~~L~~lL~-D~d~~Vv~~Al~aL~eI~~~~~~~~~~ 157 (632)
++.+.+.+++.++-++..|+.++.|+... +| +.+.+.|.++.|.++|+ +.++.+...|..+|..|+..++.....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45677889999999999999999999754 34 23444688999999997 456899999999999998654322111
Q ss_pred c-cHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHH-----HHHHHHhhcCCC-----HHHHHHHHHHHHHhh
Q 006763 158 I-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-----VERVTPRLQHAN-----CAVVLSAVKMILQQM 226 (632)
Q Consensus 158 l-~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~i-----l~~v~~~L~~~n-----~aVv~eaik~i~~~~ 226 (632)
+ ....+..|+..|...++-.+...+..|..+...++.....+ +..+..++++.+ ..++..++.++..+.
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 1 12357788888888888889888999988876555433332 455666666543 345566666665543
Q ss_pred hccC-ChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHhc
Q 006763 227 ELIT-STDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLA 304 (632)
Q Consensus 227 ~~i~-~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~ 304 (632)
..-. .... .....+.+.|..++ +.+++++.-++..|..|+...++.... +.
T Consensus 219 ~~~~~~~~~--~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~-------------------------i~ 271 (510)
T 3ul1_B 219 RNKNPAPPL--DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEM-------------------------VV 271 (510)
T ss_dssp CCCSSCCCH--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHH-------------------------HH
T ss_pred hcccchhHH--HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHH-------------------------HH
Confidence 2110 1111 11123455666666 356777777777777765432211100 00
Q ss_pred CcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHH-----HHHHHHHHHhhhchhhHHHHHHHHHHHHhhC
Q 006763 305 SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAER-----CISVLLELIKIKVNYVVQEAIIVIKDIFRRY 379 (632)
Q Consensus 305 n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~-----~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~ 379 (632)
.. .++..|.+++.+.+..++..++++++.++...+..... .+..|..++......+..++...+.++....
T Consensus 272 ~~----g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~ 347 (510)
T 3ul1_B 272 KK----GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 347 (510)
T ss_dssp TT----TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred hc----ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 00 12333444444555555555555555554322211111 1233444555555555555555555555444
Q ss_pred cccHH-----HHHHHHHHhhccCChhhHHHHHHHHHhcccCccCC--HH-----HHHHHHhhhCCCCCHHHHHHHHHHHH
Q 006763 380 PNTYE-----SIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN--AD-----ELLESFLESFPEEPAQVQLQLLTATV 447 (632)
Q Consensus 380 p~~~~-----~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~--~~-----~~l~~l~~~f~~e~~~vq~~iLta~~ 447 (632)
++... .+++.|++.+.+ .+++++..++|.|+........ .. ..+..+++-+...+++++..+|.++.
T Consensus 348 ~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ 426 (510)
T 3ul1_B 348 QDQIQQVVNHGLVPFLVGVLSK-ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAIS 426 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 43322 234445555543 2455666777777665432111 01 12344444455566777777777766
Q ss_pred HHhhcC---CCC-ChHHH------HHHHHHhhhcCCCChHHHhhHHHHH
Q 006763 448 KLFLKK---PTE-GPQQM------IQVVLNNATVETDNPDLRDRAYIYW 486 (632)
Q Consensus 448 Kl~~~~---p~e-~~~~~------v~~ll~~~~~~s~~~dvrdRA~~y~ 486 (632)
+++... +.. ....+ +.++-+ ..++.|.+|+++|....
T Consensus 427 nil~~~~~~~~~~~~~~~iee~ggl~~ie~--Lq~~~n~~i~~~A~~ii 473 (510)
T 3ul1_B 427 NIFQAAEKLGETEKLSIMIEECGGLDKIEA--LQRHENESVYKASLNLI 473 (510)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTHHHHHHH--GGGCSSHHHHHHHHHHH
T ss_pred HHHHHhHhccchHHHHHHHHHcCcHHHHHH--HHcCCCHHHHHHHHHHH
Confidence 664321 110 01111 122222 23567888888887654
No 37
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.16 E-value=3.7e-09 Score=107.38 Aligned_cols=193 Identities=19% Similarity=0.143 Sum_probs=141.7
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC-chhhHHHHHHHHH-h
Q 006763 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-VDKITEYLCDPLQ-R 88 (632)
Q Consensus 11 f~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~-~~ei~~~l~~~v~-~ 88 (632)
....++.+.++|...|..+--.+..+.. ++ +++.+.+-++|+++.+|..|+.+|+.+. .++.++.+++.+. .
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~~----~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG--QD----AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNM 98 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--HH----HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC--ch----HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 4566778888999999888888887752 22 5778888899999999999999999998 4455666666666 4
Q ss_pred hhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHH
Q 006763 89 CLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLT 168 (632)
Q Consensus 89 ~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~ 168 (632)
++.|+++.||..|+.++.++...+|...+ ..++.|..+|.|.|+.|...|+.+|..+.... .+..|+.
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~--~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~----------~~~~L~~ 166 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYSP--KIVEQSQITAFDKSTNVRRATAFAISVINDKA----------TIPLLIN 166 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHTTCSCHHHHHHHHHHHHTC---C----------CHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCcccH--HHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH----------HHHHHHH
Confidence 67899999999999999999876664443 47788999999999999999999998764311 2344555
Q ss_pred HhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006763 169 ALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (632)
Q Consensus 169 ~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~ 225 (632)
.+.+.+++.+...+..|..+...++ ..++.+...+++.++.|..+|+..+..+
T Consensus 167 ~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 167 LLKDPNGDVRNWAAFAININKYDNS----DIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTCCCH----HHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHhhccCcH----HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 5666677666666666666543332 2344555566667777777777766653
No 38
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.14 E-value=1.9e-08 Score=112.08 Aligned_cols=371 Identities=12% Similarity=0.189 Sum_probs=212.3
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHhhhh--cc--ccccccchHHHHHHHhc-CCChhHHHHHHHHHHHHHhcCCCCch
Q 006763 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDI--NA--ELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPIF 156 (632)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~A~~al~kl~~~--~p--~~v~~~~~~~~L~~lL~-D~d~~Vv~~Al~aL~eI~~~~~~~~~ 156 (632)
.++.+.+.+.+.++-++..|+.++.|+... +| +.+.+.|.++.|.++|. +.++.+...|+.+|..|+..+.....
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 356678889999999999999999998754 33 23444688999999996 55688999999999999865432111
Q ss_pred h-ccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHH-----HHHHHHhhcCCC-----HHHHHHHHHHHHHh
Q 006763 157 E-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-----VERVTPRLQHAN-----CAVVLSAVKMILQQ 225 (632)
Q Consensus 157 ~-l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~i-----l~~v~~~L~~~n-----~aVv~eaik~i~~~ 225 (632)
. +....+..|+..+...++-.+...+..|..+...+++....+ +..+..+|+..+ ..++..++.++..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 1 122456778888888888888888888888876655443333 445556665433 34555666666554
Q ss_pred hhccC-ChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHh
Q 006763 226 MELIT-STDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKL 303 (632)
Q Consensus 226 ~~~i~-~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L 303 (632)
...-. .+.. .....+.+.|..++ +.+++++.-++..|..++...++.... +
T Consensus 237 ~~~~~~~~~~--~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~-------------------------v 289 (529)
T 3tpo_A 237 CRNKNPAPPL--DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEM-------------------------V 289 (529)
T ss_dssp HCCCTTCCCH--HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH-------------------------H
T ss_pred HhcccchhhH--HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHH-------------------------H
Confidence 32110 1111 11123456667777 467788888888877776533221100 0
Q ss_pred cCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHH-----HHHHHHHHHHhhhchhhHHHHHHHHHHHHhh
Q 006763 304 ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAE-----RCISVLLELIKIKVNYVVQEAIIVIKDIFRR 378 (632)
Q Consensus 304 ~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~ 378 (632)
... .++..|.+++.+.+..++..++++++.++...+.... ..+..|+.++......+..++...+.++...
T Consensus 290 ~~~----g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~ 365 (529)
T 3tpo_A 290 VKK----GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 365 (529)
T ss_dssp HTT----TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS
T ss_pred Hhc----cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 011 1233344445555555666666666655532222111 1234556666665556666666666666655
Q ss_pred CcccHH-----HHHHHHHHhhccCChhhHHHHHHHHHhcccCccCC--HH-----HHHHHHhhhCCCCCHHHHHHHHHHH
Q 006763 379 YPNTYE-----SIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN--AD-----ELLESFLESFPEEPAQVQLQLLTAT 446 (632)
Q Consensus 379 ~p~~~~-----~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~--~~-----~~l~~l~~~f~~e~~~vq~~iLta~ 446 (632)
.++... .+++.|+..+.+ .+++++..++|.|+..+..... .. ..+..+++-+...+++++..+|.++
T Consensus 366 ~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL 444 (529)
T 3tpo_A 366 RQDQIQQVVNHGLVPFLVGVLSK-ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI 444 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred cHHHHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 444322 234455555543 3456677777777765432111 11 1244455555566777777777777
Q ss_pred HHHhhc---CCCC-ChHHH------HHHHHHhhhcCCCChHHHhhHHHHH
Q 006763 447 VKLFLK---KPTE-GPQQM------IQVVLNNATVETDNPDLRDRAYIYW 486 (632)
Q Consensus 447 ~Kl~~~---~p~e-~~~~~------v~~ll~~~~~~s~~~dvrdRA~~y~ 486 (632)
.+++.. .+.. ....+ +.+ ++. ..++.|.||+++|+...
T Consensus 445 ~nil~~~~~~~~~~~~~~~iee~ggl~~-ie~-Lq~~~n~~i~~~A~~ii 492 (529)
T 3tpo_A 445 SNIFQAAEKLGETEKLSIMIEECGGLDK-IEA-LQRHENESVYKASLNLI 492 (529)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHHH-HTG-GGGCSSHHHHHHHHHHH
T ss_pred HHHHHHhHhccChHHHHHHHHHCCcHHH-HHH-HHcCCCHHHHHHHHHHH
Confidence 666432 1110 01111 111 221 23567888888886544
No 39
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.06 E-value=3.8e-09 Score=102.52 Aligned_cols=185 Identities=23% Similarity=0.264 Sum_probs=140.5
Q ss_pred HHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHH
Q 006763 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (632)
Q Consensus 47 ~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~ 126 (632)
.+..+.+.|.|+|+.+|..|++.|+.+..++.++. +.+.+.|+++.||..|+.++.++.. ...++.|.
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~----L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~ 87 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEP----LIKALKDEDAWVRRAAADALGQIGD--------ERAVEPLI 87 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHH----HHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHH----HHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHHHHH
Confidence 46777888899999999999999999988766554 6678889999999999999998752 23568888
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHh
Q 006763 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR 206 (632)
Q Consensus 127 ~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~ 206 (632)
++|.|.|+.|...|+.+|..+... ..+..|+..+.+.+++.+...++.|..+... ..+..+...
T Consensus 88 ~~l~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~ 151 (211)
T 3ltm_A 88 KALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE------RAVEPLIKA 151 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------GGHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH------HHHHHHHHH
Confidence 999999999999999999888432 1356677777888999999999999887542 235556677
Q ss_pred hcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhC
Q 006763 207 LQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRR 271 (632)
Q Consensus 207 L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~ 271 (632)
+++.++.|...++..+..+ .+++.+ +.|..++ ..++.+|..+.+.|..+....
T Consensus 152 l~d~~~~vr~~a~~aL~~~----~~~~~~--------~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 152 LKDEDGWVRQSAADALGEI----GGERVR--------AAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHH----CSHHHH--------HHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HcCCCHHHHHHHHHHHHHh----CchhHH--------HHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 8889999999999998875 344433 2344555 467889999999888876654
No 40
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.00 E-value=1.3e-08 Score=98.02 Aligned_cols=181 Identities=24% Similarity=0.297 Sum_probs=121.6
Q ss_pred HHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHH
Q 006763 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (632)
Q Consensus 47 ~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~ 126 (632)
....+.+.|+|+|+.+|..|++.|+.+..++.++ .+.+.+.|+++.||+.|+.++.++-. + ..++.|.
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~----~L~~~l~~~~~~vr~~a~~~L~~~~~--~------~~~~~L~ 82 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE----PLIKALKDEDAWVRRAAADALGQIGD--E------RAVEPLI 82 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHH----HHHHHTTCSSHHHHHHHHHHHHHHCC--G------GGHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHH----HHHHHHcCCCHHHHHHHHHHHHhhCC--H------HHHHHHH
Confidence 4567777888888888888888888877765544 35566778888888888888877631 1 2456777
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHh
Q 006763 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR 206 (632)
Q Consensus 127 ~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~ 206 (632)
.+|.|.++.|...|+.+|..+... ..+..|+..+.+.+++.+...++.|..+... ..++.+...
T Consensus 83 ~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~ 146 (201)
T 3ltj_A 83 KALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE------RAVEPLIKA 146 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG------GGHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH------HHHHHHHHH
Confidence 788888888888888888776421 1244556666777777777777777776532 234455567
Q ss_pred hcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHH
Q 006763 207 LQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLI 267 (632)
Q Consensus 207 L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i 267 (632)
+++.++.|..+|+..+..+ .+++.+ +.|..++ ..++.+|..+.+.|..+
T Consensus 147 l~d~~~~vr~~A~~aL~~~----~~~~~~--------~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 147 LKDEDGWVRQSAADALGEI----GGERVR--------AAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHH----CSHHHH--------HHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHh----CchhHH--------HHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7777788888888877764 234332 2333444 35677777777777654
No 41
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.98 E-value=4.2e-08 Score=96.91 Aligned_cols=225 Identities=20% Similarity=0.173 Sum_probs=168.9
Q ss_pred HHHHHhhcCCCChHHHhHHHHHhcCCCc--hhhHH-----HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccc---cc
Q 006763 48 VNTFVKDSQDPNPLIRALAVRTMGCIRV--DKITE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VE 117 (632)
Q Consensus 48 iNtl~kDl~~~np~ir~lALr~L~~I~~--~ei~~-----~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~---v~ 117 (632)
+..+.+-++++++.+|..|+++|+++.. ++... ..++.+.+++.+.++.||..|+.++..+...+++. +.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 5667788888889999999888888732 22222 36788999999999999999999999998765543 22
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchh-ccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHH
Q 006763 118 DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA 196 (632)
Q Consensus 118 ~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~-l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~ 196 (632)
+.+.++.+..+|.+.++.|..+|+.+|..++..++..... .....+..|++.+.+.++..+...+..|..+...++...
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3467899999999999999999999999998543221111 112356778888888899999999999998887655433
Q ss_pred H-----HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhhcc-CchhHHHHHHHHHHHHHh
Q 006763 197 E-----NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQ 269 (632)
Q Consensus 197 ~-----~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~-~~~~~~L~~Lls-~~~niryvaL~~l~~i~~ 269 (632)
. ..++.+...+++.++.|...|+.++.++.. .+++..+.+. ..+.+.|+.++. .++++|..++..|..|..
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 2 356778888999999999999999998753 2444433332 234566777774 688999999999999998
Q ss_pred hCccc
Q 006763 270 RRPTI 274 (632)
Q Consensus 270 ~~p~~ 274 (632)
..+..
T Consensus 242 ~~~~~ 246 (252)
T 4hxt_A 242 GGWLE 246 (252)
T ss_dssp TCBCC
T ss_pred CCCcc
Confidence 76544
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.98 E-value=2.2e-08 Score=96.39 Aligned_cols=184 Identities=21% Similarity=0.292 Sum_probs=149.4
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHH
Q 006763 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQ 87 (632)
Q Consensus 8 s~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~ 87 (632)
...+..+++++.++|..+|+.+--.+..+... + ++..+.+-+.|+|+.+|..|+++|+.++.++.++. +.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~--~----~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~----L~ 82 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE--R----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVEP----LI 82 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--G----GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHH----HH
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh--h----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHH----HH
Confidence 45688899999999999999998888887642 2 35667777889999999999999999998876654 66
Q ss_pred hhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHH
Q 006763 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLL 167 (632)
Q Consensus 88 ~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll 167 (632)
+.+.|+++.||..|+.++.++.. + ..++.|..+|.|.|+.|...|+.+|..+... ..+..|.
T Consensus 83 ~~l~d~~~~vr~~a~~aL~~~~~--~------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~ 144 (201)
T 3ltj_A 83 KALKDEDGWVRQSAAVALGQIGD--E------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE----------RAVEPLI 144 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC--G------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG----------GGHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc--H------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH----------HHHHHHH
Confidence 78899999999999999998742 2 3567888999999999999999999988532 1356677
Q ss_pred HHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006763 168 TALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (632)
Q Consensus 168 ~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~ 225 (632)
..+.+.+++.+...++.|..+.. + ..++.+...+++.++.|...|+..+-.+
T Consensus 145 ~~l~d~~~~vr~~A~~aL~~~~~--~----~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 145 KALKDEDGWVRQSAADALGEIGG--E----RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCS--H----HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc--h----hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 77888999999999999998853 2 3455566677888899999998887754
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.97 E-value=2.5e-08 Score=96.76 Aligned_cols=184 Identities=22% Similarity=0.298 Sum_probs=149.3
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHH
Q 006763 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQ 87 (632)
Q Consensus 8 s~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~ 87 (632)
...+...++++.+++...|+.+--.+..+.. ++ ++..|.+-+.|+++.+|..|+++|+.+..++.++. +.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~~----~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~----L~ 87 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--ER----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVEP----LI 87 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--GG----GHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHH----HH
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--cc----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHH----HH
Confidence 4557788889999999999988888887754 23 45677777889999999999999999998876654 66
Q ss_pred hhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHH
Q 006763 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLL 167 (632)
Q Consensus 88 ~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll 167 (632)
+++.|+++.||..|+.++.++-. ...++.|.++|.|.|+.|...|+.+|..+... ..+..|+
T Consensus 88 ~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~ 149 (211)
T 3ltm_A 88 KALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE----------RAVEPLI 149 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH----------HHHHHHH
Confidence 78899999999999999998742 13568889999999999999999999988432 1355677
Q ss_pred HHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006763 168 TALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (632)
Q Consensus 168 ~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~ 225 (632)
..+.+.+++.+...++.|..+.. ...++.+...+++.++.|...|+.++..+
T Consensus 150 ~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 150 KALKDEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 77889999999999999998863 24456666778889999999999988765
No 44
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.91 E-value=1.9e-08 Score=99.96 Aligned_cols=220 Identities=17% Similarity=0.161 Sum_probs=168.2
Q ss_pred CCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHH-----HHHHHHhhcCCCChHHHhHHHHHhcCCCc--hhh
Q 006763 6 DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQDPNPLIRALAVRTMGCIRV--DKI 78 (632)
Q Consensus 6 Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL-----~iNtl~kDl~~~np~ir~lALr~L~~I~~--~ei 78 (632)
+-.+.|..+++.+.++|.+.++-+--.+..++..+++..-. ++..|.+-++++++.+|..|+++|+++.. ++.
T Consensus 9 ~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp CTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 44567999999999999999998888886655433332111 45678888999999999999999999874 443
Q ss_pred HHH-----HHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccc---ccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 006763 79 TEY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (632)
Q Consensus 79 ~~~-----l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~---v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~ 150 (632)
.+. .++.+.+++.+.++.||+.|+.++..+....+.. +.+.+.++.|.++|.+.++.|...|+.+|..++..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 333 6788999999999999999999999998765432 33457889999999999999999999999999865
Q ss_pred CCCCchh-ccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHH-----HHHHHHHhhcCCCHHHHHHHHHHHHH
Q 006763 151 SSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAVKMILQ 224 (632)
Q Consensus 151 ~~~~~~~-l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~-----il~~v~~~L~~~n~aVv~eaik~i~~ 224 (632)
++..... .....+..|++.+.+.++..+...+..|..+...+++.... .++.+...+++.++.|..+|+.++.+
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4221111 11234677888888889999999999999888666554433 45667778888889999999888775
Q ss_pred h
Q 006763 225 Q 225 (632)
Q Consensus 225 ~ 225 (632)
+
T Consensus 249 l 249 (252)
T 4db8_A 249 L 249 (252)
T ss_dssp T
T ss_pred H
Confidence 4
No 45
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.90 E-value=8.8e-08 Score=94.55 Aligned_cols=218 Identities=20% Similarity=0.159 Sum_probs=170.9
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHH-----HHHHHHhhcCCCChHHHhHHHHHhcCCCc--hhhHH--
Q 006763 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQDPNPLIRALAVRTMGCIRV--DKITE-- 80 (632)
Q Consensus 10 lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL-----~iNtl~kDl~~~np~ir~lALr~L~~I~~--~ei~~-- 80 (632)
..+..++++.+++.+.++-+-..+.+++..+++.... ++..+.+-++++++.+|..|+++|+++.. ++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3567888999999999999999999998887643322 46778889999999999999999999875 34333
Q ss_pred ---HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccc---ccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCC
Q 006763 81 ---YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (632)
Q Consensus 81 ---~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~---v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~ 154 (632)
..++.+.+++.+.++.||..|+.++..+...+++. +.+.+.++.|.++|.+.++.|...|+.+|..++..++..
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 25788999999999999999999999999766543 223467899999999999999999999999998654321
Q ss_pred ch-hccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHH-----HHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q 006763 155 IF-EITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAVKMILQQME 227 (632)
Q Consensus 155 ~~-~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~-----il~~v~~~L~~~n~aVv~eaik~i~~~~~ 227 (632)
.. -.....+..|+..+.+.++..+...+..|..+...++..... .++.+...+++.++.|..+|+.++.++..
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 11 112335677888888888899999999999887655544332 46777788899999999999999887653
No 46
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.90 E-value=6.6e-08 Score=104.34 Aligned_cols=352 Identities=14% Similarity=0.054 Sum_probs=191.6
Q ss_pred HHHHhhcC--CCcchHHHHHHHHHHhcCCC----------------CcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC
Q 006763 13 DVVNCMQT--ENLELKKLVYLYLINYAKSQ----------------PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR 74 (632)
Q Consensus 13 ~vi~l~~s--~d~~~Krl~YLyl~~~~~~~----------------~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~ 74 (632)
..+..+.+ .+...|.++-+++.++.+.+ ++..-.+-+.+.+-+.++++.+ ..+-.+++.|.
T Consensus 39 ~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia 117 (462)
T 1ibr_B 39 ELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIA 117 (462)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHH
Confidence 34444444 36889999999999986543 2333334455666677777766 55555555554
Q ss_pred c---h-hhHHHHHHHHHhhhCCC--ChHHHHHHHHHHHHhhhhc-cccccc--cchHHHHHHHhcCC--ChhHHHHHHHH
Q 006763 75 V---D-KITEYLCDPLQRCLKDD--DPYVRKTAAICVAKLYDIN-AELVED--RGFLESLKDLISDN--NPMVVANAVAA 143 (632)
Q Consensus 75 ~---~-ei~~~l~~~v~~~L~d~--~pyVRK~A~~al~kl~~~~-p~~v~~--~~~~~~L~~lL~D~--d~~Vv~~Al~a 143 (632)
. + .-.+.+++.+.+++.+. ++.+|..|+.++.++.... |+.... ..+++.+..+|.|. ++.|...|+.+
T Consensus 118 ~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~ 197 (462)
T 1ibr_B 118 CAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNA 197 (462)
T ss_dssp HHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3 2 24567888899999998 9999999999999998754 544331 24667778888888 78999999999
Q ss_pred HHHHHhcCCC--CchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCH----HHHH-HHHHHHHHhhcCCCHHHHH
Q 006763 144 LAEIEENSSR--PIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA----REAE-NIVERVTPRLQHANCAVVL 216 (632)
Q Consensus 144 L~eI~~~~~~--~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~----~~~~-~il~~v~~~L~~~n~aVv~ 216 (632)
+..+...-.. ..+......+..+...+.+.++-.+..++++|..+....+ .... .+++.+...+++.+..|..
T Consensus 198 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~ 277 (462)
T 1ibr_B 198 LLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVAL 277 (462)
T ss_dssp HHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 8875421100 0011000012223333344455445556666654432111 1122 5666666677888899999
Q ss_pred HHHHHHHHhhhccCChHHHHHHHHhc---ccchhhhccCchhHHHHHHHHH-HHHHhhCccchhcccceeEeccCCchhH
Q 006763 217 SAVKMILQQMELITSTDVVRNLCKKM---APPLVTLLSAEPEIQYVALRNI-NLIVQRRPTILAHEIKVFFCKYNDPIYV 292 (632)
Q Consensus 217 eaik~i~~~~~~i~~~~~~~~~~~~~---~~~L~~Lls~~~niryvaL~~l-~~i~~~~p~~~~~~~~~f~~l~~dd~~I 292 (632)
.|+..+..+.... .+ ........ ..+-.. ....-++. .+..+ -.+.+. +...-.. ..+++..+
T Consensus 278 ~a~~~l~~~~~~~--~~-~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~l~p~l~~~----l~~~d~d---~~~~~~~~ 344 (462)
T 1ibr_B 278 QGIEFWSNVCDEE--MD-LAIEASEAAEQGRPPEH--TSKFYAKG-ALQYLVPILTQT----LTKQDEN---DDDDDWNP 344 (462)
T ss_dssp HHHHHHHHHHHHH--HH-HHHHHCCTTCSSSCSSC--CCCCHHHH-HHHHHHHHHHHH----TTCCCSS---CCTTCCSH
T ss_pred HHHHHHHHHHHHH--HH-HHHhcccccccCCCccc--hhHHHHHH-HhhhccHHHHHH----HHhcccc---cccccchH
Confidence 8888776553210 00 00000000 000000 00000000 00100 000000 0000000 11333566
Q ss_pred HHHHHHHHHHhcC---cccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHhhhchhh
Q 006763 293 KMEKLEIMIKLAS---DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE-----RAAERCISVLLELIKIKVNYV 364 (632)
Q Consensus 293 k~~kL~lL~~L~n---~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~-----~~~~~~v~~Ll~ll~~~~~~v 364 (632)
|+.+.+.|..++. +.-...+++.+.+++.+.+...+..++.++|.++.... +.....+..++.++......|
T Consensus 345 r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~V 424 (462)
T 1ibr_B 345 CKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV 424 (462)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 7666666666553 23344455555566666666777777777777765322 223456777777777766667
Q ss_pred HHHHHHHHHHHHhh
Q 006763 365 VQEAIIVIKDIFRR 378 (632)
Q Consensus 365 ~~e~i~~l~~ilr~ 378 (632)
...+...+.++...
T Consensus 425 r~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 425 RDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77776666666554
No 47
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.80 E-value=5.5e-08 Score=96.63 Aligned_cols=218 Identities=17% Similarity=0.136 Sum_probs=157.4
Q ss_pred HHHHHhhcCCCChHHHhHHHHHhcCCCc--hhhHH-----HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccc---cc
Q 006763 48 VNTFVKDSQDPNPLIRALAVRTMGCIRV--DKITE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VE 117 (632)
Q Consensus 48 iNtl~kDl~~~np~ir~lALr~L~~I~~--~ei~~-----~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~---v~ 117 (632)
.+.+.+.|.++|+.+|..|+++++++.. ++..+ ..++.+.+++.+.++-||..|+.++..+...+++. +.
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5678888999999999898888865433 22222 35688999999999999999999999998755543 22
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCC-chhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHH
Q 006763 118 DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA 196 (632)
Q Consensus 118 ~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~-~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~ 196 (632)
+.+.++.|..+|.+.++.|..+|+.+|..++...... ..-.....+..|++.+.+.++-.+...+..|..+...++...
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 3467899999999999999999999999997654321 011122356778888888888888899999998887665443
Q ss_pred HH-----HHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHH-hcccchhhhcc-CchhHHHHHHHHHHHH
Q 006763 197 EN-----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLI 267 (632)
Q Consensus 197 ~~-----il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~-~~~~~L~~Lls-~~~niryvaL~~l~~i 267 (632)
.. .+..+...+++.++.|...|+.++.++.. .+++..+.+.. .+.+.|+.++. .++++|.-+...|..|
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 32 45677788899999999999999998753 24444333322 24455666663 5667777777766654
No 48
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.76 E-value=2.1e-07 Score=97.82 Aligned_cols=267 Identities=15% Similarity=0.197 Sum_probs=127.5
Q ss_pred HHhhcCCCChHHHhH---HHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHH
Q 006763 51 FVKDSQDPNPLIRAL---AVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (632)
Q Consensus 51 l~kDl~~~np~ir~l---ALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~ 127 (632)
+.|=++++|...|-+ ++..++.. .++++ .+...+++=++|++||+|-.|+-++.++ .+|+.++. +.+.+++
T Consensus 73 v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I--~~~~m~~~--l~~~lk~ 146 (355)
T 3tjz_B 73 MTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQI--TDSTMLQA--IERYMKQ 146 (355)
T ss_dssp HHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHH--CCTTTHHH--HHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcC--CCHHHHHH--HHHHHHH
Confidence 456666777665543 55666665 34555 6677777777777777777777777776 35666653 6677777
Q ss_pred HhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhh
Q 006763 128 LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRL 207 (632)
Q Consensus 128 lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L 207 (632)
+|.|+||.|..+|+.+...+... +++..+.+++.+...+
T Consensus 147 ~L~d~~pyVRk~A~l~~~kL~~~-----------------------------------------~pe~v~~~~~~l~~ll 185 (355)
T 3tjz_B 147 AIVDKVPSVSSSALVSSLHLLKC-----------------------------------------SFDVVKRWVNEAQEAA 185 (355)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTTT-----------------------------------------CHHHHHTTHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHHhcc-----------------------------------------CHHHHHHHHHHHHHHh
Confidence 77777777777776666555332 2333334455566677
Q ss_pred cCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccCchhHHHHHHHHHHHHHhhC-ccchhcccce-eEec
Q 006763 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRR-PTILAHEIKV-FFCK 285 (632)
Q Consensus 208 ~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls~~~niryvaL~~l~~i~~~~-p~~~~~~~~~-f~~l 285 (632)
.+.|+.|++.|+.++..+.. .+...+.. +++.+..---++|-.+...++.+..+...+ |..-.+.+.. ..++
T Consensus 186 ~d~n~~V~~~Al~lL~ei~~--~d~~a~~k----Lv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L 259 (355)
T 3tjz_B 186 SSDNIMVQYHALGLLYHVRK--NDRLAVSK----MISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCL 259 (355)
T ss_dssp TCSSHHHHHHHHHHHHHHHT--TCHHHHHH----HHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCC
T ss_pred cCCCccHHHHHHHHHHHHHh--hchHHHHH----HHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 78888888888887776532 13322222 221111100013433444455554555444 3333333442 3456
Q ss_pred cCCchhHHHHHHHHHHHhcCccc--HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchh
Q 006763 286 YNDPIYVKMEKLEIMIKLASDRN--IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNY 363 (632)
Q Consensus 286 ~~dd~~Ik~~kL~lL~~L~n~~N--i~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~ 363 (632)
.+....|-.++...++.+.+... ....+.-|..|+...|.+++--+++.|..++.++|.....|-..+.+++++.+..
T Consensus 260 ~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~s 339 (355)
T 3tjz_B 260 RNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRS 339 (355)
T ss_dssp CCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC----------------------------
T ss_pred cCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHh
Confidence 66677788888888877655211 1123444556677778888888888888888888888888888888888877665
Q ss_pred hHHHHHH
Q 006763 364 VVQEAII 370 (632)
Q Consensus 364 v~~e~i~ 370 (632)
+..-++.
T Consensus 340 I~t~Ait 346 (355)
T 3tjz_B 340 IATLAIT 346 (355)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 5544443
No 49
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.69 E-value=2.8e-07 Score=88.87 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=119.1
Q ss_pred CCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHH-----HHHHHHhhcCCCChHHHhHHHHHhcCCC--ch
Q 006763 4 GKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQDPNPLIRALAVRTMGCIR--VD 76 (632)
Q Consensus 4 G~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL-----~iNtl~kDl~~~np~ir~lALr~L~~I~--~~ 76 (632)
|++....++-+++++.++|..++.-+..++.+++..+++.... ++..+.+-+.++++.+|..|+++|+++. .+
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 5677788889999999999999999999999999777664322 4567888899999999999999999986 44
Q ss_pred hhHHH-----HHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccc---cccchHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 006763 77 KITEY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (632)
Q Consensus 77 ei~~~-----l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v---~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~ 148 (632)
+..+. .++.+.+++.+.++.||+.|+.++..+...+++.. .+.+.++.|.++|.+.++.|...|+.+|..++
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44333 45889999999999999999999999987666542 23578899999999999999999999999987
Q ss_pred hcC
Q 006763 149 ENS 151 (632)
Q Consensus 149 ~~~ 151 (632)
..+
T Consensus 167 ~~~ 169 (210)
T 4db6_A 167 SGG 169 (210)
T ss_dssp TSC
T ss_pred cCC
Confidence 643
No 50
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.69 E-value=5.4e-05 Score=90.20 Aligned_cols=409 Identities=9% Similarity=0.024 Sum_probs=223.1
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCC-------------CchhhH
Q 006763 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI-------------RVDKIT 79 (632)
Q Consensus 13 ~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I-------------~~~ei~ 79 (632)
+++....++|-..| +--++..+ +.+|+......+.+... +.++.+|-+|.-.+-+. ..++--
T Consensus 9 ~~L~~~~spd~~~r--Ae~~L~~~-~~~p~~~~~L~~il~~~--~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k 83 (960)
T 1wa5_C 9 KFLAESVIASTAKT--SERNLRQL-ETQDGFGLTLLHVIAST--NLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNV 83 (960)
T ss_dssp HHHHHTTSGGGHHH--HHHHHHHH-HTSTTHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHH
T ss_pred HHHHHhcCCCHHHH--HHHHHHHh-hcCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHH
Confidence 34444445665555 77777766 67788766666666532 34667888876665542 234555
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHhhhh-ccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchh-
Q 006763 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE- 157 (632)
Q Consensus 80 ~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~-~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~- 157 (632)
+.+-..+.+++.+.++.||++++.++.++.+. .|+.-+ ++++.|..++...|+..+..++.++.+|++........
T Consensus 84 ~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp--~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~ 161 (960)
T 1wa5_C 84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWP--TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSD 161 (960)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchh--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 56666677777777799999999999999986 454443 47788888888888888999999999998754210000
Q ss_pred ccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCH---------HHHHHHHHHHHHhhhc
Q 006763 158 ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANC---------AVVLSAVKMILQQMEL 228 (632)
Q Consensus 158 l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~---------aVv~eaik~i~~~~~~ 228 (632)
-....+..+++.. ..+ +++++ ..+...++..+. .++..++|++..+..
T Consensus 162 ~~~~~l~~~l~~~--~~~-----ll~~~---------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~- 218 (960)
T 1wa5_C 162 ELFLEIKLVLDVF--TAP-----FLNLL---------------KTVDEQITANENNKASLNILFDVLLVLIKLYYDFNC- 218 (960)
T ss_dssp HHHHHHHHHHHHH--HHH-----HHHHH---------------HHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHH--HHH-----HHHHH---------------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 0000111111110 000 11111 111111211100 111223333322110
Q ss_pred cCChHHHHHHHHhcccchhhhc-------cCc---------hhHHHHHHHHHHHHHhhCccchhcccceeE-----ec--
Q 006763 229 ITSTDVVRNLCKKMAPPLVTLL-------SAE---------PEIQYVALRNINLIVQRRPTILAHEIKVFF-----CK-- 285 (632)
Q Consensus 229 i~~~~~~~~~~~~~~~~L~~Ll-------s~~---------~niryvaL~~l~~i~~~~p~~~~~~~~~f~-----~l-- 285 (632)
..-++.....+....+.+..++ ..+ ..+|--+++++..+..++++.|.+|+..|. .+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~ 298 (960)
T 1wa5_C 219 QDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTS 298 (960)
T ss_dssp SCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0112211111111111112222 111 135667788999999999988877654221 11
Q ss_pred ---cCCchhHHHHHHHHHHHhcCcc----------cHHHHH-HHHHHhhh----h-----cC--------------HHHH
Q 006763 286 ---YNDPIYVKMEKLEIMIKLASDR----------NIDQVL-LEFKEYAT----E-----VD--------------VDFV 328 (632)
Q Consensus 286 ---~~dd~~Ik~~kL~lL~~L~n~~----------Ni~~Iv-~EL~~yl~----~-----~d--------------~~~~ 328 (632)
...+..++..+++.+..++... .+..++ .-+..++. + .| ...+
T Consensus 299 ~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R 378 (960)
T 1wa5_C 299 ISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRR 378 (960)
T ss_dssp CCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHH
T ss_pred cCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcH
Confidence 1334678899999999887542 233344 22223331 1 01 1245
Q ss_pred HHHHHHHHHHHHhhhhh-HHHHHHHHHHHHh------hhchhhHHHHHHHHHHHHhhC-----c--------ccHHHHHH
Q 006763 329 RKAVRAIGRCAIKLERA-AERCISVLLELIK------IKVNYVVQEAIIVIKDIFRRY-----P--------NTYESIIA 388 (632)
Q Consensus 329 ~~~i~aIg~la~k~~~~-~~~~v~~Ll~ll~------~~~~~v~~e~i~~l~~ilr~~-----p--------~~~~~ii~ 388 (632)
+.+...+..++..+++. ...++..+.+.+. .......+.++..+..+..+. + +.......
T Consensus 379 ~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~ 458 (960)
T 1wa5_C 379 RACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK 458 (960)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHH
Confidence 56667788888877632 2233344444444 122234444566666665321 1 22222223
Q ss_pred HHHHhhccC--ChhhHHHHHHHHHhcccCccCC--HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhh
Q 006763 389 TLCESLDTL--DEPEAKASMIWIIGEYAERIDN--ADELLESFLESFPEEPAQVQLQLLTATVKLFL 451 (632)
Q Consensus 389 ~L~~~l~~i--~~p~a~~~~iWiLGEy~~~i~~--~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~ 451 (632)
.+...+.+- ..|-.+..++|++|.|++.+.. -..++..+++.+.+.+..||...-.|+..+..
T Consensus 459 ~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 333344442 2677899999999999987631 24566677778888889999999999998765
No 51
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.66 E-value=1.8e-06 Score=94.26 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=110.0
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHhhhhccc---cccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhc-
Q 006763 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI- 158 (632)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~---~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l- 158 (632)
++.+.+.|.+.++.+|..|+.++.++...+++ .+...+.++.|.++|++.++.+...|+.+|..+...++.....+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45677888889999999999999998765553 34456888999999999999999999999999986532221111
Q ss_pred cHHHHHHHHHHhh-ccChhhHHHHHHHHhcccc--CCHHH-HHHHHHHHHHhhc--------C--------CCHHHHHHH
Q 006763 159 TSHTLSKLLTALN-ECTEWGQVFILDALSRYKA--ADARE-AENIVERVTPRLQ--------H--------ANCAVVLSA 218 (632)
Q Consensus 159 ~~~~~~~Ll~~l~-~~~ew~qi~lL~lL~~y~~--~~~~~-~~~il~~v~~~L~--------~--------~n~aVv~ea 218 (632)
....+..|++.|. ..++-.|......|..... ..... ....+..+..+|. + .+..|+..|
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 1233566777776 5566666666666654442 22221 1245566666662 1 356788899
Q ss_pred HHHHHHhhhccCChHHHHHHHH--hcccchhhhcc
Q 006763 219 VKMILQQMELITSTDVVRNLCK--KMAPPLVTLLS 251 (632)
Q Consensus 219 ik~i~~~~~~i~~~~~~~~~~~--~~~~~L~~Lls 251 (632)
+.++.++.. +++..+.+.. .+.++|+.++.
T Consensus 164 ~~aL~nLs~---~~~~~~~i~~~~g~i~~Lv~lL~ 195 (457)
T 1xm9_A 164 TGCLRNLSS---ADAGRQTMRNYSGLIDSLMAYVQ 195 (457)
T ss_dssp HHHHHHHTT---SHHHHHHHTTSTTHHHHHHHHHH
T ss_pred HHHHHHHcc---CHHHHHHHHHcCCCHHHHHHHHH
Confidence 999988753 3554444432 35567777774
No 52
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.60 E-value=9.1e-07 Score=87.85 Aligned_cols=200 Identities=18% Similarity=0.209 Sum_probs=144.0
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccc--cchHHHHHHHhc-CCChhHHHHHHHHHHHHHhcCCCC
Q 006763 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRP 154 (632)
Q Consensus 78 i~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~--~~~~~~L~~lL~-D~d~~Vv~~Al~aL~eI~~~~~~~ 154 (632)
+...+-+.+.+.+.|+++.+|+.|+.++.++...+|+.... ..+.+.|..++. |.|+.|+..|+.++..++..-+..
T Consensus 12 i~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~ 91 (242)
T 2qk2_A 12 ILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR 91 (242)
T ss_dssp CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred ccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 33444455778889999999999999999999876654321 256788888995 999999999999999998654433
Q ss_pred chhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChH-
Q 006763 155 IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTD- 233 (632)
Q Consensus 155 ~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~- 233 (632)
+.......+..++..+.+.++-.+-.....|..+..... ...+++.+...++|.|+.|..+++..+..++... .++
T Consensus 92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~-~~~~ 168 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRT-QPTA 168 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-CGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc-CCCC
Confidence 333445567778888888887766666666655443322 3568888889999999999999999998865332 121
Q ss_pred HHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCcc-chhcccc
Q 006763 234 VVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPT-ILAHEIK 280 (632)
Q Consensus 234 ~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~-~~~~~~~ 280 (632)
........+.+.|..+++ +++++|-.+..++..+...-+. .+.+++.
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 112233456777777775 6889999999999998876543 4555553
No 53
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.53 E-value=4.6e-05 Score=90.58 Aligned_cols=444 Identities=13% Similarity=0.115 Sum_probs=223.5
Q ss_pred HHHHHh-hcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC-------chhhHHHHH
Q 006763 12 TDVVNC-MQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKITEYLC 83 (632)
Q Consensus 12 ~~vi~l-~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~-------~~ei~~~l~ 83 (632)
..+++. ..++|...|+-+.-++..+ +.+|+....+..-+. .+.++.+|-.|+.+|-+.. .++-.+.+-
T Consensus 27 ~~~l~~l~~~~~~~~r~~A~~~L~~~-~~~p~~~~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir 102 (963)
T 2x19_B 27 EKALHQLYYDPNIENKNLAQKWLMQA-QVSPQAWHFSWQLLQ---PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLK 102 (963)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHH-HHSTTHHHHHHHHTS---TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHH-hcCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHH
Confidence 344444 5568889999999999875 456774444444343 3678899999888887531 222233333
Q ss_pred HHHHhhhCC---CChHHHHHHHHHHHHhhhh-ccccccccchHHHHHHHhcC-----CChhHHHHHHHHHHHHHhcC--C
Q 006763 84 DPLQRCLKD---DDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISD-----NNPMVVANAVAALAEIEENS--S 152 (632)
Q Consensus 84 ~~v~~~L~d---~~pyVRK~A~~al~kl~~~-~p~~v~~~~~~~~L~~lL~D-----~d~~Vv~~Al~aL~eI~~~~--~ 152 (632)
..+.+.+.+ ..++||.+.+.++..+.+. .|+.-+ ++++.+..+++. .++...-.++..|..+++.- .
T Consensus 103 ~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp--~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~ 180 (963)
T 2x19_B 103 AQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP--CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTS 180 (963)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccc--hHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcc
Confidence 333333332 4699999999999999876 355444 467777777764 25556666666666555321 0
Q ss_pred ----------CCchhccHHHHHHHHH-Hhhcc--ChhhHHHHHHHHhccccCC--HHHHHHHHHHHHHhhcCCCHHHHHH
Q 006763 153 ----------RPIFEITSHTLSKLLT-ALNEC--TEWGQVFILDALSRYKAAD--AREAENIVERVTPRLQHANCAVVLS 217 (632)
Q Consensus 153 ----------~~~~~l~~~~~~~Ll~-~l~~~--~ew~qi~lL~lL~~y~~~~--~~~~~~il~~v~~~L~~~n~aVv~e 217 (632)
...+.-..+.+..++. .+.+. +.|....+|+.+..+.+-+ ......+++.+...+. ++.+...
T Consensus 181 ~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~~~~~~ 258 (963)
T 2x19_B 181 RLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DSELFDS 258 (963)
T ss_dssp CC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--STTTHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--CchHHHH
Confidence 0001111112222222 22222 2377778888886544311 1111345665555554 3445556
Q ss_pred HHHHHHHhhhccCC---hHHHHHHHHhcccchhhh----ccCchhHHHHHHHHHHHHHhhCccchh------cc----cc
Q 006763 218 AVKMILQQMELITS---TDVVRNLCKKMAPPLVTL----LSAEPEIQYVALRNINLIVQRRPTILA------HE----IK 280 (632)
Q Consensus 218 aik~i~~~~~~i~~---~~~~~~~~~~~~~~L~~L----ls~~~niryvaL~~l~~i~~~~p~~~~------~~----~~ 280 (632)
|+.++..+...-.. ...+..+...+...+-.+ ...+.+..--..+.+..+...++..+. ++ +.
T Consensus 259 a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~ 338 (963)
T 2x19_B 259 SVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVN 338 (963)
T ss_dssp HHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHH
Confidence 66666655321011 122222222222111011 122333222223444444444443332 11 11
Q ss_pred e-eEecc-----CCchhHHHHHHHHHHHhcCc-----------------ccHHHHHHHHHHhhhhc--------C----H
Q 006763 281 V-FFCKY-----NDPIYVKMEKLEIMIKLASD-----------------RNIDQVLLEFKEYATEV--------D----V 325 (632)
Q Consensus 281 ~-f~~l~-----~dd~~Ik~~kL~lL~~L~n~-----------------~Ni~~Iv~EL~~yl~~~--------d----~ 325 (632)
. +.|.. ..+..+...+++....++.+ .-+..+++.+...+... | .
T Consensus 339 ~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~ 418 (963)
T 2x19_B 339 MIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKE 418 (963)
T ss_dssp HHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHH
T ss_pred HHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHH
Confidence 1 11222 12333566677776666551 11122233333222110 1 1
Q ss_pred ---HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------hchhhHHHHHHHHHHHHhhCcccHHHHHHHHHHhh
Q 006763 326 ---DFVRKAVRAIGRCAIKLERAAERCISVLLELIKI--------KVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESL 394 (632)
Q Consensus 326 ---~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~--------~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l 394 (632)
++++.+...+..++..++. .++..+++.+.. ......+.++..+..+.....+.....+..++..+
T Consensus 419 ~~~~~r~~~~~~L~~~~~~~~~---~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l 495 (963)
T 2x19_B 419 QFRIYRVDISDTLMYVYEMLGA---ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI 495 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHccH---HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH
Confidence 2344555555556655442 234444433322 11233444555666666553322112334444444
Q ss_pred ccC--ChhhHHHHHHHHHhcccCccC-CH---HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC---ChHHHHHHH
Q 006763 395 DTL--DEPEAKASMIWIIGEYAERID-NA---DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE---GPQQMIQVV 465 (632)
Q Consensus 395 ~~i--~~p~a~~~~iWiLGEy~~~i~-~~---~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e---~~~~~v~~l 465 (632)
..+ ..|.++..++|++|.|++.+. ++ +.+++.++..+.+ +.|+.....|+.++.-.++.. -..++++.+
T Consensus 496 ~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l 573 (963)
T 2x19_B 496 PRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVS 573 (963)
T ss_dssp GGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333 357788999999999998653 32 2345556666643 789998888999887654321 144555555
Q ss_pred HHh
Q 006763 466 LNN 468 (632)
Q Consensus 466 l~~ 468 (632)
++.
T Consensus 574 ~~~ 576 (963)
T 2x19_B 574 QDV 576 (963)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 54
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.46 E-value=3.4e-06 Score=81.09 Aligned_cols=178 Identities=20% Similarity=0.195 Sum_probs=135.9
Q ss_pred HHHHHhhcCCCChHHHhHHHHHhcCCC--chhhHH-----HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccc---cc
Q 006763 48 VNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VE 117 (632)
Q Consensus 48 iNtl~kDl~~~np~ir~lALr~L~~I~--~~ei~~-----~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~---v~ 117 (632)
...|.+=++++|+.+|..|+++|+++. .++..+ ..++.+.++|.+.++.||..|+.++..+...+++. +.
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 345666788999999999999999885 244333 35688999999999999999999999998655543 32
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchh-ccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHH
Q 006763 118 DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA 196 (632)
Q Consensus 118 ~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~-l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~ 196 (632)
+.+.++.|..+|.+.++.|...|+.+|..++..++..... +....+..|++.+...++-.+...+..|..+...+++..
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 173 (210)
T 4db6_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173 (210)
T ss_dssp HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence 3467899999999999999999999999998654321111 123356778888888888888888888888876655443
Q ss_pred H-----HHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006763 197 E-----NIVERVTPRLQHANCAVVLSAVKMILQQ 225 (632)
Q Consensus 197 ~-----~il~~v~~~L~~~n~aVv~eaik~i~~~ 225 (632)
. ..++.+...+++.++.|..+|..++..+
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3 2466777888999999999988887654
No 55
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.43 E-value=5.7e-05 Score=84.50 Aligned_cols=316 Identities=15% Similarity=0.106 Sum_probs=168.7
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHhhhhccc---cccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhc-CCCCchhc
Q 006763 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN-SSRPIFEI 158 (632)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~---~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~-~~~~~~~l 158 (632)
++.+.++|.+.++-++..|+.++.++...+++ .+...+-++.|.++|...++.|..+|+.+|..|+.. +......+
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 56688889999999999999999888765443 244457889999999999999999999999999863 22111111
Q ss_pred -cHHHHHHHHHHhhc-cChhhHHHHHHHHhcccc--CCHHHH-HHHHHHHHHhh-----------------c-CCCHHHH
Q 006763 159 -TSHTLSKLLTALNE-CTEWGQVFILDALSRYKA--ADAREA-ENIVERVTPRL-----------------Q-HANCAVV 215 (632)
Q Consensus 159 -~~~~~~~Ll~~l~~-~~ew~qi~lL~lL~~y~~--~~~~~~-~~il~~v~~~L-----------------~-~~n~aVv 215 (632)
....+..|+..|.. .++-.|-....+|..+.. .+.... ...+..+..++ + +.+..|+
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~ 209 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence 12346666776665 344445444444443332 111111 11122232222 1 2356899
Q ss_pred HHHHHHHHHhhhccCChHHHHHHHH--hcccchhhhcc-------CchhHHHHHHHHHHHHHhhC----ccchhccccee
Q 006763 216 LSAVKMILQQMELITSTDVVRNLCK--KMAPPLVTLLS-------AEPEIQYVALRNINLIVQRR----PTILAHEIKVF 282 (632)
Q Consensus 216 ~eaik~i~~~~~~i~~~~~~~~~~~--~~~~~L~~Lls-------~~~niryvaL~~l~~i~~~~----p~~~~~~~~~f 282 (632)
..|+.++.++.- .+++..+.+.. -++.+|+.++. .+...+--++..|..|+... |..- .+...
T Consensus 210 ~nAa~~L~NLs~--~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~-~~~~~- 285 (584)
T 3l6x_A 210 TNTAGCLRNVSS--ERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE-RYQEA- 285 (584)
T ss_dssp HHHHHHHHHHTS--SCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC-C-----
T ss_pred HHHHHHHHHHhc--CCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh-hhhhh-
Confidence 999999988742 23443333321 22345666653 12334444555555554321 1100 00000
Q ss_pred EeccCCchhHHHHHHHHHHHhcCcccH-----HHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHh---hhh------hHH
Q 006763 283 FCKYNDPIYVKMEKLEIMIKLASDRNI-----DQVLLEFKEYATE-VDVDFVRKAVRAIGRCAIK---LER------AAE 347 (632)
Q Consensus 283 ~~l~~dd~~Ik~~kL~lL~~L~n~~Ni-----~~Iv~EL~~yl~~-~d~~~~~~~i~aIg~la~k---~~~------~~~ 347 (632)
..++...+ ...+...+ ..+++-|...+.. .+.+.++.++.+|..++.- .+. ..+
T Consensus 286 --~~~~~~~~---------~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~ 354 (584)
T 3l6x_A 286 --APNVANNT---------GTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQE 354 (584)
T ss_dssp ---------------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSH
T ss_pred --cccccccc---------cccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHc
Confidence 00000000 01111111 1344444444432 3566666677777666421 110 113
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcc---cHHHHHHHHHHhhccCC-------hhhHHHHHHHHHhcc
Q 006763 348 RCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN---TYESIIATLCESLDTLD-------EPEAKASMIWIIGEY 413 (632)
Q Consensus 348 ~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~---~~~~ii~~L~~~l~~i~-------~p~a~~~~iWiLGEy 413 (632)
..+..|++||......+...++..++++.+.... +...++..|++.|..-. ..++...++|.+|+-
T Consensus 355 ~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL 430 (584)
T 3l6x_A 355 KALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV 430 (584)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence 5577777777776666777777777776653221 23556777777665431 235566777777664
No 56
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.42 E-value=0.00015 Score=84.41 Aligned_cols=284 Identities=11% Similarity=0.124 Sum_probs=181.5
Q ss_pred HHHHHhhcC---CCChHHHhHHHHHhcCCCch---hhHHHHHHHHHhhhCCCC--------hHHHHHHHHHHHHhhhhcc
Q 006763 48 VNTFVKDSQ---DPNPLIRALAVRTMGCIRVD---KITEYLCDPLQRCLKDDD--------PYVRKTAAICVAKLYDINA 113 (632)
Q Consensus 48 iNtl~kDl~---~~np~ir~lALr~L~~I~~~---ei~~~l~~~v~~~L~d~~--------pyVRK~A~~al~kl~~~~p 113 (632)
...|.+=+- +.++++|+-|+-.+|-+..- +..+.|. ..+.+.+ +.||..|++++..+|--..
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~----~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~ 469 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLK----NIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA 469 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHH----HHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHH----HHHcCccccccccccHHHHHHHHHHHHHHhcCCC
Confidence 344555554 67899999999988877432 3444444 4444433 8999999999999875322
Q ss_pred ccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhc--cChhhHHHHHHHHhccccC
Q 006763 114 ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNE--CTEWGQVFILDALSRYKAA 191 (632)
Q Consensus 114 ~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~--~~ew~qi~lL~lL~~y~~~ 191 (632)
+ +...+.|..+|.|.+..+...|..+|.-+.-.++. ...+..|+..+.+ -+.|..- +.-.|......
T Consensus 470 ~----eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~-aalgLGll~~g 538 (963)
T 4ady_A 470 N----IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRG-LAVGLALINYG 538 (963)
T ss_dssp C----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHH-HHHHHHHHTTT
T ss_pred C----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHH-HHHHHHhhhCC
Confidence 1 13567888888887765554555566555433332 2345566655432 2344433 33334433344
Q ss_pred CHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhh-cc-CchhHHHHHHHHHHHHHh
Q 006763 192 DAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTL-LS-AEPEIQYVALRNINLIVQ 269 (632)
Q Consensus 192 ~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~L-ls-~~~niryvaL~~l~~i~~ 269 (632)
+++.+..+++.+ ..+.++.|.+.++-++..-.....++..++.+ +.. .+ .+.++|..|.-.|..|..
T Consensus 539 ~~e~~~~li~~L---~~~~dp~vRygaa~alglAyaGTGn~~aIq~L--------L~~~~~d~~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 539 RQELADDLITKM---LASDESLLRYGGAFTIALAYAGTGNNSAVKRL--------LHVAVSDSNDDVRRAAVIALGFVLL 607 (963)
T ss_dssp CGGGGHHHHHHH---HHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHH--------HHHHHHCSCHHHHHHHHHHHHHHTS
T ss_pred ChHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHH--------HHHhccCCcHHHHHHHHHHHHhhcc
Confidence 555566666643 33578899999887764322223466544432 222 22 466899999999999987
Q ss_pred hCccchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhh----h
Q 006763 270 RRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER----A 345 (632)
Q Consensus 270 ~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~----~ 345 (632)
..|+.+.+.+..+ ..+.+..||+-+.-.|-.++-.+.-..+++-|..+..|.|.++++.++.++|.++..-.. .
T Consensus 608 g~~e~v~rlv~~L--~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~r 685 (963)
T 4ady_A 608 RDYTTVPRIVQLL--SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQ 685 (963)
T ss_dssp SSCSSHHHHTTTG--GGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTT
T ss_pred CCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchH
Confidence 7776544433322 234568899999888888776555678888888888999999999999999999875433 3
Q ss_pred HHHHHHHHHHHHhh
Q 006763 346 AERCISVLLELIKI 359 (632)
Q Consensus 346 ~~~~v~~Ll~ll~~ 359 (632)
....+..+.+.+..
T Consensus 686 va~~l~~L~~~~~d 699 (963)
T 4ady_A 686 VADINKNFLSVITN 699 (963)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 45556666666654
No 57
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.42 E-value=2.8e-06 Score=85.19 Aligned_cols=209 Identities=13% Similarity=0.173 Sum_probs=144.6
Q ss_pred HHHhhhCCCChHHHHHHHHHHHH-hhhhccccc--c-c-cchHHHHHHHh-cCCChhHHHHHHHHHHHHHhcCC-CCch-
Q 006763 85 PLQRCLKDDDPYVRKTAAICVAK-LYDINAELV--E-D-RGFLESLKDLI-SDNNPMVVANAVAALAEIEENSS-RPIF- 156 (632)
Q Consensus 85 ~v~~~L~d~~pyVRK~A~~al~k-l~~~~p~~v--~-~-~~~~~~L~~lL-~D~d~~Vv~~Al~aL~eI~~~~~-~~~~- 156 (632)
...+.+.++++.-||.|+.++.. +..-+|+.. . + ..+++.|.+.+ +|.|+.|+..|+.++..++..-+ +.+-
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45667799999999999999999 987777766 2 1 35678888899 79999999999999999986554 3332
Q ss_pred hccHHHHHHHHHHhhccChhhHHH---HHHHHhccccCCHHH--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCC
Q 006763 157 EITSHTLSKLLTALNECTEWGQVF---ILDALSRYKAADARE--AENIVERVTPRLQHANCAVVLSAVKMILQQMELITS 231 (632)
Q Consensus 157 ~l~~~~~~~Ll~~l~~~~ew~qi~---lL~lL~~y~~~~~~~--~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~ 231 (632)
......+..++..+++..+=.+-. .|+.+.......... ...+++.+...|+|.|+.|..++++++..+......
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 344556778888887765433222 233333322111111 446888888999999999999999999987654322
Q ss_pred -hHHHHHHH-Hhcccchhhhcc-CchhHHHHHHHHHHHHHhhCcc-chhcccceeEeccCCchhHHHHHHHHH
Q 006763 232 -TDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPT-ILAHEIKVFFCKYNDPIYVKMEKLEIM 300 (632)
Q Consensus 232 -~~~~~~~~-~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~-~~~~~~~~f~~l~~dd~~Ik~~kL~lL 300 (632)
++.+...+ ..+.+.|..+++ +++++|-.+..++..+...-.+ .+.+|+..+ ..+|+.|+.-.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L-------d~~k~~ki~~~ 245 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL-------DNLKRKKIEET 245 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS-------CHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH-------hHHHHHHHHHH
Confidence 13333344 567777777775 6889999999999988865433 466655432 23566666543
No 58
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.34 E-value=2.1e-07 Score=83.50 Aligned_cols=117 Identities=19% Similarity=0.230 Sum_probs=88.6
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhh
Q 006763 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCL 90 (632)
Q Consensus 11 f~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L 90 (632)
...+++++.+++..+|..+.-.+..+... . +..|.+-++|+|+.+|..|+++|+.++.++. ++.+.+++
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a----~~~L~~~L 82 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDE--A-----FEPLLESLSNEDWRIRGAAAWIIGNFQDERA----VEPLIKLL 82 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSST--T-----HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHH----HHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCch--H-----HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHH
Confidence 45566688888888887776666555332 1 4777888889999999999999999998765 45566777
Q ss_pred CCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHH
Q 006763 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAE 146 (632)
Q Consensus 91 ~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~e 146 (632)
.|+++.||+.|+.++.++-. ...++.|..+++|.|+.|...|+.+|.+
T Consensus 83 ~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 89999999999999998752 2356788899999999999999888754
No 59
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.33 E-value=5.3e-05 Score=82.55 Aligned_cols=332 Identities=11% Similarity=0.078 Sum_probs=188.3
Q ss_pred HHHHHhhcCCCChHHHhHHHHHhcCCCchhh----HH-HHHHHHHhhhCCC------------ChHHHHHHHHHHHHhhh
Q 006763 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKI----TE-YLCDPLQRCLKDD------------DPYVRKTAAICVAKLYD 110 (632)
Q Consensus 48 iNtl~kDl~~~np~ir~lALr~L~~I~~~ei----~~-~l~~~v~~~L~d~------------~pyVRK~A~~al~kl~~ 110 (632)
+..+...+.+.|+.-..-.|-.|+. .++. .+ -++|.+.++|.+. ++-+|..|+.|+..+..
T Consensus 34 ~~~l~~~~~~~~~~~~~~~ll~~~~--~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~ 111 (458)
T 3nmz_A 34 VYSLLSMLGTHDKDDMSRTLLAMSS--SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIH 111 (458)
T ss_dssp -----------CCHHHHHHHHHHHS--STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHc--CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHc
Confidence 4555566655555432222333332 2222 11 2345666777652 37999999999999999
Q ss_pred hccccccc---cchH----------HHHHHHhcCC--------ChhH-------HHHHHHHHHHHHhcCCCCchh-ccHH
Q 006763 111 INAELVED---RGFL----------ESLKDLISDN--------NPMV-------VANAVAALAEIEENSSRPIFE-ITSH 161 (632)
Q Consensus 111 ~~p~~v~~---~~~~----------~~L~~lL~D~--------d~~V-------v~~Al~aL~eI~~~~~~~~~~-l~~~ 161 (632)
..|+.... .+.+ +.+.+++... +| | ..+|+.+|..|..+. ..+-. ....
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~qAv~aL~nls~~~-e~R~~i~~~G 189 (458)
T 3nmz_A 112 SQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNP-MPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELG 189 (458)
T ss_dssp HSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC---CCCTTTTHHHHHHHHHHTTSH-HHHHHHHHTT
T ss_pred cCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCC-ccchhhHHHHHHHHHHHHhcCCH-HHHHHHHHCC
Confidence 99986542 1223 2223334322 11 3 348888888885431 11100 1112
Q ss_pred HHHHHHHHhhc-----------cChhhHHHHHHHHhccccCCHHHH------HHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 006763 162 TLSKLLTALNE-----------CTEWGQVFILDALSRYKAADAREA------ENIVERVTPRLQHANCAVVLSAVKMILQ 224 (632)
Q Consensus 162 ~~~~Ll~~l~~-----------~~ew~qi~lL~lL~~y~~~~~~~~------~~il~~v~~~L~~~n~aVv~eaik~i~~ 224 (632)
.+..|+..|.. .++-.|......|..++..++... ...+..+..+|++.+..|...|+.++.+
T Consensus 190 ~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 269 (458)
T 3nmz_A 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269 (458)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34445555421 123346666677777665544222 2347778888999999999999999987
Q ss_pred hhhccCChHHHHHHH-Hhcccchhhhc-c-CchhHHHHHHHHHHHHHhhCc----cchhc--cccee-EeccCC-c---h
Q 006763 225 QMELITSTDVVRNLC-KKMAPPLVTLL-S-AEPEIQYVALRNINLIVQRRP----TILAH--EIKVF-FCKYND-P---I 290 (632)
Q Consensus 225 ~~~~i~~~~~~~~~~-~~~~~~L~~Ll-s-~~~niryvaL~~l~~i~~~~p----~~~~~--~~~~f-~~l~~d-d---~ 290 (632)
+... .+++....+. ...+++|+.+| + .+++++-.++..|..|+...+ .+... -+..+ ..+.+. + .
T Consensus 270 Ls~~-~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~ 348 (458)
T 3nmz_A 270 LSWR-ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 348 (458)
T ss_dssp HTSS-CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTT
T ss_pred HhcC-CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchH
Confidence 6421 1333322222 13567888864 4 577888888888888876332 22211 11111 112222 2 2
Q ss_pred hHHHHHHHHHHHhc-----CcccHHHH-----HHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHH
Q 006763 291 YVKMEKLEIMIKLA-----SDRNIDQV-----LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA-----ERCISVLLE 355 (632)
Q Consensus 291 ~Ik~~kL~lL~~L~-----n~~Ni~~I-----v~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~-----~~~v~~Ll~ 355 (632)
.++..+.-+|..|+ +++|...+ +..|.+.+...+.+.+++++.+|+.++...+... .-++..|++
T Consensus 349 ~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~ 428 (458)
T 3nmz_A 349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN 428 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 47888888888876 56665554 4567777777788888888888888885332221 234777888
Q ss_pred HHhhhchhhHHHHHHHHHHHHhhCcccHH
Q 006763 356 LIKIKVNYVVQEAIIVIKDIFRRYPNTYE 384 (632)
Q Consensus 356 ll~~~~~~v~~e~i~~l~~ilr~~p~~~~ 384 (632)
++..+...+...+..++.++...+|..|+
T Consensus 429 LL~s~~~~v~~~Aa~AL~nL~~~~p~ky~ 457 (458)
T 3nmz_A 429 LIHSKHKMIAMGSAAALRNLMANRPAKYK 457 (458)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHTCCSCC--
T ss_pred HHhCCCHHHHHHHHHHHHHHHcCCHhhhc
Confidence 88777777778888888888887777653
No 60
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.30 E-value=5.7e-05 Score=90.00 Aligned_cols=425 Identities=10% Similarity=0.076 Sum_probs=211.5
Q ss_pred HHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC-------chhhHH----HH
Q 006763 14 VVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKITE----YL 82 (632)
Q Consensus 14 vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~-------~~ei~~----~l 82 (632)
++..+.++|...|+-+.-++..+ +.+|+.-..+..-+.+ +.++.+|-.|..+|-+.. .++-.+ .+
T Consensus 12 ~l~~~~~~d~~~r~~A~~~L~~~-~~~p~~w~~~~~lL~~---~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~l 87 (971)
T 2x1g_F 12 AVVSFYRSNSQNQAITHEWLTDA-EASPQAWQFSWQLMQL---GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKI 87 (971)
T ss_dssp THHHHHTSTTTC----CHHHHHT-TTSTHHHHHHHHHTCT---TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHH
Confidence 34444567778888898888874 5567744444444433 578899988888776531 222333 44
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCC------ChhHHHHHHHHHHHHHh----cCC
Q 006763 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN------NPMVVANAVAALAEIEE----NSS 152 (632)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~------d~~Vv~~Al~aL~eI~~----~~~ 152 (632)
+..+.+.- ...++||.+.+.|+..+.+.+-..-+ ++++.+..++... ++...-.++..|..+++ ...
T Consensus 88 l~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p~Wp--~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~ 164 (971)
T 2x1g_F 88 LESIVRFA-GGPKIVLNRLCISLGAYIVHMLGEWP--GAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHT 164 (971)
T ss_dssp HHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTCC--------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHHHHcccccc--HHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCc
Confidence 44444433 23689999999999999876422222 3555566666543 45566666666665543 211
Q ss_pred CCc----hhccHHHHHHHHH----Hhhcc-C------hh-hHHHHHHHHhccc-----cCCHHHHHHHHHHHHHhh----
Q 006763 153 RPI----FEITSHTLSKLLT----ALNEC-T------EW-GQVFILDALSRYK-----AADAREAENIVERVTPRL---- 207 (632)
Q Consensus 153 ~~~----~~l~~~~~~~Ll~----~l~~~-~------ew-~qi~lL~lL~~y~-----~~~~~~~~~il~~v~~~L---- 207 (632)
... .+.....+..++. .+... + .| .....|+.+..|. |.+ ....+++.+.. |
T Consensus 165 ~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~ 241 (971)
T 2x1g_F 165 SVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKC 241 (971)
T ss_dssp SSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhh
Confidence 100 0111111122221 12111 1 13 3556677776533 222 22345555544 3
Q ss_pred ------------cCCCHHHHHHHHHHHHHhhhccC---ChHHHHHHHHhcccchhhh----ccCch---hHHHHHHHHHH
Q 006763 208 ------------QHANCAVVLSAVKMILQQMELIT---STDVVRNLCKKMAPPLVTL----LSAEP---EIQYVALRNIN 265 (632)
Q Consensus 208 ------------~~~n~aVv~eaik~i~~~~~~i~---~~~~~~~~~~~~~~~L~~L----ls~~~---niryvaL~~l~ 265 (632)
.+.++.+.-.|+.++..+...-. ....+..++..+......+ -..+. +......+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~ 321 (971)
T 2x1g_F 242 YWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFV 321 (971)
T ss_dssp HSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHH
T ss_pred ccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 01345666677777776653100 1123332222221111111 12343 66666677777
Q ss_pred HHHhhCccchh-----------ccc----ce-eEec-c----CCchhHHHHHHHHHHHhcCc----------c-------
Q 006763 266 LIVQRRPTILA-----------HEI----KV-FFCK-Y----NDPIYVKMEKLEIMIKLASD----------R------- 307 (632)
Q Consensus 266 ~i~~~~p~~~~-----------~~~----~~-f~~l-~----~dd~~Ik~~kL~lL~~L~n~----------~------- 307 (632)
.+...++..+. +++ .. +.|. . .++..+...+++.+..++.+ .
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~ 401 (971)
T 2x1g_F 322 SSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIK 401 (971)
T ss_dssp HHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 77766665543 222 21 2232 1 34566788898888777541 1
Q ss_pred -cHHHHHHHHHHhhh---hc-----C-------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH----Hhh-----hch
Q 006763 308 -NIDQVLLEFKEYAT---EV-----D-------VDFVRKAVRAIGRCAIKLERAAERCISVLLEL----IKI-----KVN 362 (632)
Q Consensus 308 -Ni~~Iv~EL~~yl~---~~-----d-------~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~l----l~~-----~~~ 362 (632)
-+..+++.+..-+. +. | .++|+.+...+..++..++ +.+++.++.. +.. ...
T Consensus 402 ~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w 478 (971)
T 2x1g_F 402 PLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHW 478 (971)
T ss_dssp HHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcH
Confidence 11223333333221 10 1 1356666666766776555 2344444433 332 122
Q ss_pred hhHHHHHHHHHHHHhhCcccHHHHHHHHHHhhccCC----hhhHHHHHHHHHhcccCccCC----HHHHHHHHhhhCCCC
Q 006763 363 YVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD----EPEAKASMIWIIGEYAERIDN----ADELLESFLESFPEE 434 (632)
Q Consensus 363 ~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~----~p~a~~~~iWiLGEy~~~i~~----~~~~l~~l~~~f~~e 434 (632)
...+.++..+..+.+..++.....+..+++.+..+. +|.++..++|++|.|++.+.. -+.+++.++..+ +
T Consensus 479 ~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~- 556 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N- 556 (971)
T ss_dssp HHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H-
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C-
Confidence 344445556666655433221223334444332222 677899999999999987643 344556565555 2
Q ss_pred CHHHHHHHHHHHHHHhhcCC
Q 006763 435 PAQVQLQLLTATVKLFLKKP 454 (632)
Q Consensus 435 ~~~vq~~iLta~~Kl~~~~p 454 (632)
+.|+...-.|+.++.-..+
T Consensus 557 -~~v~~~A~~al~~l~~~~~ 575 (971)
T 2x1g_F 557 -SSMSAQATLGLKELCRDCQ 575 (971)
T ss_dssp -SSCHHHHHHHHHHHHHHCH
T ss_pred -hHHHHHHHHHHHHHHHHHH
Confidence 6788888888888875443
No 61
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.30 E-value=4.6e-07 Score=81.27 Aligned_cols=118 Identities=18% Similarity=0.235 Sum_probs=91.2
Q ss_pred HHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHH
Q 006763 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (632)
Q Consensus 47 ~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~ 126 (632)
.++.+.+.|+|+|+.+|..|++.|+.++.+. .+.+.+++.|+++.||..|+.++.++.. ...++.|.
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~~L~ 79 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLI 79 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHHHHH
Confidence 4567888899999999999999999999875 3678899999999999999999988752 13567888
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhc
Q 006763 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSR 187 (632)
Q Consensus 127 ~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~ 187 (632)
.+|.|.|+.|...|+.+|..+.. ...+..|...+.+.++|.+....+.|.+
T Consensus 80 ~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 80 KLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 89999999999999999998842 2345667777778888888777777654
No 62
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.30 E-value=7.5e-06 Score=79.53 Aligned_cols=190 Identities=14% Similarity=0.122 Sum_probs=139.7
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCC-chhccHHHHHHHHHHhhccChhhHHHHHHHHhccc---cCCHHHH
Q 006763 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYK---AADAREA 196 (632)
Q Consensus 121 ~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~-~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~---~~~~~~~ 196 (632)
.+..|..+|.|+|+.|+.+|+.++.++.+..++. ........+..+++.+.+.++-..++-+++|.... |-+++..
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5578899999999999999999999998774321 12234455666666677888888888888877653 5567778
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhC--cc
Q 006763 197 ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRR--PT 273 (632)
Q Consensus 197 ~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~--p~ 273 (632)
..+.+.+...+.+.|.....+++-....+ + +.++ . +++...+.+|+ |+++.+|-.||+.+..|..+. |+
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k-v~~~--~----~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKL-Q-PLED--S----KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C-BSCC--C----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcC-C-cccc--h----HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 88899998999999999999999998876 2 2221 1 12344445666 578999999999999998764 56
Q ss_pred chhcccc-eeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 006763 274 ILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE 318 (632)
Q Consensus 274 ~~~~~~~-~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~ 318 (632)
++..-.+ +=+.+.++|++++.++|++|..+.+..=.+.++.++..
T Consensus 186 i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~ 231 (265)
T 3b2a_A 186 HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK 231 (265)
T ss_dssp CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH
Confidence 6655444 22456677999999999999999876444445554443
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.29 E-value=7.3e-05 Score=81.53 Aligned_cols=294 Identities=13% Similarity=0.133 Sum_probs=192.1
Q ss_pred chhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHH-----HHHHHhhcC-CCChHHHhHHHHHhcCCCc-----hh
Q 006763 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILA-----VNTFVKDSQ-DPNPLIRALAVRTMGCIRV-----DK 77 (632)
Q Consensus 9 ~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~-----iNtl~kDl~-~~np~ir~lALr~L~~I~~-----~e 77 (632)
.+.+..++++.+++...++-+--++.+++..+++.-..+ +..|.+=|. ++++.++-.|..+|+++.. ..
T Consensus 44 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~ 123 (457)
T 1xm9_A 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123 (457)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHH
Confidence 357888999999999999999999999998777755544 456777787 7899999888888877643 23
Q ss_pred hHHHHHHHHHhhhC--------C--------CChHHHHHHHHHHHHhhhhccc---ccccc-chHHHHHHHhcC------
Q 006763 78 ITEYLCDPLQRCLK--------D--------DDPYVRKTAAICVAKLYDINAE---LVEDR-GFLESLKDLISD------ 131 (632)
Q Consensus 78 i~~~l~~~v~~~L~--------d--------~~pyVRK~A~~al~kl~~~~p~---~v~~~-~~~~~L~~lL~D------ 131 (632)
+++-.++.+.+++. + .++.|++.|+.++..+... |+ .+.+. +.++.|..+|.+
T Consensus 124 i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 202 (457)
T 1xm9_A 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASR 202 (457)
T ss_dssp HHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccC
Confidence 55567788888882 2 3577888999999988864 43 23333 788888888864
Q ss_pred CChhHHHHHHHHHHHHHhc--------------------------------------------------CCCC-chhccH
Q 006763 132 NNPMVVANAVAALAEIEEN--------------------------------------------------SSRP-IFEITS 160 (632)
Q Consensus 132 ~d~~Vv~~Al~aL~eI~~~--------------------------------------------------~~~~-~~~l~~ 160 (632)
.+..++-+|+.+|..++.. .+.. .+-+..
T Consensus 203 ~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (457)
T 1xm9_A 203 CDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHS 282 (457)
T ss_dssp TTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSH
T ss_pred CchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCc
Confidence 4556676777666655310 0000 011233
Q ss_pred HHHHHHHHHhhcc-ChhhHHHHHHHHhccccCCHH---HH-H------HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhcc
Q 006763 161 HTLSKLLTALNEC-TEWGQVFILDALSRYKAADAR---EA-E------NIVERVTPRLQHANCAVVLSAVKMILQQMELI 229 (632)
Q Consensus 161 ~~~~~Ll~~l~~~-~ew~qi~lL~lL~~y~~~~~~---~~-~------~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i 229 (632)
..++.|+..|... ++-.+......|..++..+.. .. + ..+..+..+|++.+..|+.+|+.++.++..
T Consensus 283 ~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~-- 360 (457)
T 1xm9_A 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR-- 360 (457)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT--
T ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc--
Confidence 4556666666543 466666666777666543211 11 1 345677788999999999999999998754
Q ss_pred CChHHHHHHHHhcccchhhhcc-Cc------hhHHHHHHHHHHHHHhhCccchhcc-----cc-eeEeccCC-chhHHHH
Q 006763 230 TSTDVVRNLCKKMAPPLVTLLS-AE------PEIQYVALRNINLIVQRRPTILAHE-----IK-VFFCKYND-PIYVKME 295 (632)
Q Consensus 230 ~~~~~~~~~~~~~~~~L~~Lls-~~------~niryvaL~~l~~i~~~~p~~~~~~-----~~-~f~~l~~d-d~~Ik~~ 295 (632)
+++....+....+++|+.+|. .+ .++...++..|..|+...++....- +. ...++.++ +..|++.
T Consensus 361 -~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~ 439 (457)
T 1xm9_A 361 -HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEA 439 (457)
T ss_dssp -SGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -CHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHH
Confidence 333333344567888999885 32 3688889999998887665422110 11 12233344 4566666
Q ss_pred HHHHHHHhcCc
Q 006763 296 KLEIMIKLASD 306 (632)
Q Consensus 296 kL~lL~~L~n~ 306 (632)
|..+|..+...
T Consensus 440 A~~~L~~~~~~ 450 (457)
T 1xm9_A 440 ARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHTTSSS
T ss_pred HHHHHHHHHcc
Confidence 66666666544
No 64
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.24 E-value=8.4e-05 Score=84.89 Aligned_cols=92 Identities=10% Similarity=0.028 Sum_probs=71.0
Q ss_pred ChHHHhHHHHHhcCCCc-----hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcc----ccccccchHHHHHHHh
Q 006763 59 NPLIRALAVRTMGCIRV-----DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA----ELVEDRGFLESLKDLI 129 (632)
Q Consensus 59 np~ir~lALr~L~~I~~-----~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p----~~v~~~~~~~~L~~lL 129 (632)
++.+|.+|+-.|++++. ..-+..+.+.+.+.+.+.+.-.|+-|+-++..+- .+| .+..+.++++.|.+++
T Consensus 307 ~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLS-l~~~VKe~L~~d~~~L~~Lv~ll 385 (778)
T 3opb_A 307 VEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLS-LKASVKIMIRSNESFTEILLTMI 385 (778)
T ss_dssp SGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHT-TSSHHHHHHHHCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-CCHHHHHHHHhCHHHHHHHHHHH
Confidence 36889999999988763 2334568888899998876666999999998764 344 3455668889999999
Q ss_pred cC-CChhHHHHHHHHHHHHHhcC
Q 006763 130 SD-NNPMVVANAVAALAEIEENS 151 (632)
Q Consensus 130 ~D-~d~~Vv~~Al~aL~eI~~~~ 151 (632)
++ .+..+.+.++..|.-+....
T Consensus 386 k~~~d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 386 KSQKMTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp TTTCCTTHHHHHHHHHHHTTCCC
T ss_pred hCCCCchHHHHHHHHHHHhcCCC
Confidence 85 78889999999999887654
No 65
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.21 E-value=3.1e-05 Score=76.59 Aligned_cols=174 Identities=14% Similarity=0.158 Sum_probs=114.5
Q ss_pred HHHhhcCCCChHHHhHHHHHhcCCCch------hhHHHHHHHHHhhhC-CCChHHHHHHHHHHHHhhhhccccccc--cc
Q 006763 50 TFVKDSQDPNPLIRALAVRTMGCIRVD------KITEYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAELVED--RG 120 (632)
Q Consensus 50 tl~kDl~~~np~ir~lALr~L~~I~~~------ei~~~l~~~v~~~L~-d~~pyVRK~A~~al~kl~~~~p~~v~~--~~ 120 (632)
.|.+.++|++...|-.|+..|+.+... .-...+.+.+.+.+. |+++.||+.|+.|+..+...-...+.. ..
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ 98 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA 98 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 455556677777776666666544211 123456677777784 888888888888888877533222211 13
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhcc----ccC--CHH
Q 006763 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRY----KAA--DAR 194 (632)
Q Consensus 121 ~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y----~~~--~~~ 194 (632)
+++.+.+.+.|+++.|..+|..++..+....+ ....+..++..+.+.++..+..++.+|... .|. ...
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 56677777788888888888888888765432 123455666667666666666677766653 222 234
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhcc
Q 006763 195 EAENIVERVTPRLQHANCAVVLSAVKMILQQMELI 229 (632)
Q Consensus 195 ~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i 229 (632)
....++..+..++.+.++.|.-.|+.++..+...+
T Consensus 173 ~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 55678888889999999999999999988765433
No 66
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.16 E-value=0.0017 Score=74.28 Aligned_cols=457 Identities=12% Similarity=0.135 Sum_probs=264.8
Q ss_pred CCCcchHHHHHHHHHH---hcCCCCcHHHHHHHHHHhhc--CCCChHHHhHHHHHhcCCCc---hhhHHHHHHHHHhhh-
Q 006763 20 TENLELKKLVYLYLIN---YAKSQPDLAILAVNTFVKDS--QDPNPLIRALAVRTMGCIRV---DKITEYLCDPLQRCL- 90 (632)
Q Consensus 20 s~d~~~Krl~YLyl~~---~~~~~~el~lL~iNtl~kDl--~~~np~ir~lALr~L~~I~~---~ei~~~l~~~v~~~L- 90 (632)
.+|...+-+.-+|+.. |....++ ++-|.+++ ....+-+|+++|-.++.+-. .+.-+.+...+...+
T Consensus 144 ~~~~~~~~~l~~~~~l~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~ 218 (778)
T 3opb_A 144 GEDTHVTYLLSIILQLLNKFKYNFKE-----VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIV 218 (778)
T ss_dssp TCSSCHHHHHHHHHHHHHHSCCCSTT-----TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHcCccccc-----hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 3444455444344433 3445566 34455555 35667899999988887642 233333333333333
Q ss_pred ---C--CCChHHHHHHHHHHHHhhhhcccccc----ccchHHHHHHHhc-CCChhHHHHHHHHHHHHHhcCCCCchhccH
Q 006763 91 ---K--DDDPYVRKTAAICVAKLYDINAELVE----DRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPIFEITS 160 (632)
Q Consensus 91 ---~--d~~pyVRK~A~~al~kl~~~~p~~v~----~~~~~~~L~~lL~-D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~ 160 (632)
. +.++++ .++.++.-+|-..|+... .++|.+.+.+.+. .++..+..+++.+|...|.+.. .-..+.
T Consensus 219 e~~~~~~~~~~~--~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~--cR~~I~ 294 (778)
T 3opb_A 219 EAEIDVGNDPLS--IIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDET--MRTYIT 294 (778)
T ss_dssp HHHHTCSSCHHH--HHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHH--HHHHHH
T ss_pred hhccCCCCccHH--HHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcH--HHHHHH
Confidence 2 467765 677778888988887543 4578888887774 4566676777777777664431 112223
Q ss_pred HHHHHHHHHhhcc---ChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHH
Q 006763 161 HTLSKLLTALNEC---TEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRN 237 (632)
Q Consensus 161 ~~~~~Ll~~l~~~---~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~ 237 (632)
..+..+|..+-.. ..|.-+.+.++- ...........++.+.+...|.+.+....--|+..+.++.- +++.-..
T Consensus 295 ~~~~~~L~~~l~~~~ir~lAavvL~KL~-~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl---~~~VKe~ 370 (778)
T 3opb_A 295 ENYLQLLERSLNVEDVQIYSALVLVKTW-SFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSL---KASVKIM 370 (778)
T ss_dssp HHHHHHHHHHTTSGGGHHHHHHHHHHHT-GGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT---SSHHHHH
T ss_pred HhHHHHHHHHhccHHHHHHHHHHHHHHh-cCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC---CHHHHHH
Confidence 3333444433221 122222222222 12211222344577777778877665557777777776532 3333333
Q ss_pred HHH--hcccchhhhcc--CchhHHHHHHHHHHHHHhhCccchh----------------c-------------cc-----
Q 006763 238 LCK--KMAPPLVTLLS--AEPEIQYVALRNINLIVQRRPTILA----------------H-------------EI----- 279 (632)
Q Consensus 238 ~~~--~~~~~L~~Lls--~~~niryvaL~~l~~i~~~~p~~~~----------------~-------------~~----- 279 (632)
+.. .+...|+.+++ .++.+.|-++..|..++...|.... + ++
T Consensus 371 L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~ 450 (778)
T 3opb_A 371 IRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE 450 (778)
T ss_dssp HHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH
Confidence 321 22334566664 4678999999999988875443111 0 00
Q ss_pred ---------cee-EeccCCchhHHHHHHHHHHHhcCc-ccHHHH-----HHHHHHhhhhcCHH---HHHHHHHHHHHHHH
Q 006763 280 ---------KVF-FCKYNDPIYVKMEKLEIMIKLASD-RNIDQV-----LLEFKEYATEVDVD---FVRKAVRAIGRCAI 340 (632)
Q Consensus 280 ---------~~f-~~l~~dd~~Ik~~kL~lL~~L~n~-~Ni~~I-----v~EL~~yl~~~d~~---~~~~~i~aIg~la~ 340 (632)
..+ .++.+++..+|..+..+|..|+.. +|...+ ++-|+.++.+.... .+..+.+++.+++.
T Consensus 451 ~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLli 530 (778)
T 3opb_A 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLI 530 (778)
T ss_dssp HHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh
Confidence 011 234566778899999999999854 444444 45677888765433 78899999999986
Q ss_pred hhhhh-------HHHHHHHHHHHHhh-hc-h------------hhHHHHHHHHHHHHhhCc----ccHHHH------HHH
Q 006763 341 KLERA-------AERCISVLLELIKI-KV-N------------YVVQEAIIVIKDIFRRYP----NTYESI------IAT 389 (632)
Q Consensus 341 k~~~~-------~~~~v~~Ll~ll~~-~~-~------------~v~~e~i~~l~~ilr~~p----~~~~~i------i~~ 389 (632)
...+. ....+..|+++|.. .+ . .-..+++.++.++..... +.+..+ ++.
T Consensus 531 s~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~ 610 (778)
T 3opb_A 531 FTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWST 610 (778)
T ss_dssp TSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHH
T ss_pred cCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHH
Confidence 43211 12578899999883 11 1 115688899999876431 334434 444
Q ss_pred HHHhhccCChhhHHHHHHHHHhcccCcc----------CCHH--HHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC-
Q 006763 390 LCESLDTLDEPEAKASMIWIIGEYAERI----------DNAD--ELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE- 456 (632)
Q Consensus 390 L~~~l~~i~~p~a~~~~iWiLGEy~~~i----------~~~~--~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e- 456 (632)
|.+.+.+ ..+.++++++|++......- .++. .-++.++.-...++.++|.++.-|++-+....|.-
T Consensus 611 L~~LL~s-~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia 689 (778)
T 3opb_A 611 IENLMLD-ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIA 689 (778)
T ss_dssp HHHGGGC-SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHhC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHH
Confidence 5554443 34567888888886543211 1121 13666666667789999998887777775433320
Q ss_pred ----ChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhc
Q 006763 457 ----GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (632)
Q Consensus 457 ----~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~ 490 (632)
+....+..++..+.....+.++|.|+.....-+.
T Consensus 690 ~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 690 KELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 0123455566655433479999999988776554
No 67
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.16 E-value=0.0005 Score=81.87 Aligned_cols=243 Identities=12% Similarity=0.152 Sum_probs=137.0
Q ss_pred cchHHHHHHHHHHhcCCCCcHHH-HHHHHHHhhcC------CCChHHHhHHHHHhcCCCc---------h------hhHH
Q 006763 23 LELKKLVYLYLINYAKSQPDLAI-LAVNTFVKDSQ------DPNPLIRALAVRTMGCIRV---------D------KITE 80 (632)
Q Consensus 23 ~~~Krl~YLyl~~~~~~~~el~l-L~iNtl~kDl~------~~np~ir~lALr~L~~I~~---------~------ei~~ 80 (632)
.+.|+-+.-.+..++...++..+ .+.+.+..=++ ++|...|-.|+.+++.|.. . ++.+
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred cCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 46777777777777776665333 22232222222 5667888888887776621 1 4555
Q ss_pred HHHHHHHhhhCCC---ChHHHHHHHHHHHHhhhh-ccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCC----
Q 006763 81 YLCDPLQRCLKDD---DPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS---- 152 (632)
Q Consensus 81 ~l~~~v~~~L~d~---~pyVRK~A~~al~kl~~~-~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~---- 152 (632)
.+...|...+.|+ +|+||.+|+.++.++... .|+... .+++.+...|.|.++-|..+|..+|..++....
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~--~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~ 532 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTS 532 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSS
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH--HHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccc
Confidence 5566677777777 999999999999998764 333333 355666777888899999999999999876421
Q ss_pred -------CCchhccHHHHHHHHHHhhcc---------ChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhh----cC-CC
Q 006763 153 -------RPIFEITSHTLSKLLTALNEC---------TEWGQVFILDALSRYKAADAREAENIVERVTPRL----QH-AN 211 (632)
Q Consensus 153 -------~~~~~l~~~~~~~Ll~~l~~~---------~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L----~~-~n 211 (632)
........+.+.+|+..+... ++..--.+-+++..+...-......+++.+...+ ++ .+
T Consensus 533 ~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~ 612 (960)
T 1wa5_C 533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSN 612 (960)
T ss_dssp CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCC
T ss_pred ccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCC
Confidence 112233455566666666553 2222222222222222111112233444433333 22 34
Q ss_pred HHH---HHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccC-chhHHHHHHHHHHHHHhhC
Q 006763 212 CAV---VLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-EPEIQYVALRNINLIVQRR 271 (632)
Q Consensus 212 ~aV---v~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls~-~~niryvaL~~l~~i~~~~ 271 (632)
+.. .++|+.++... ..++....+...+.+.+...+.+ ..++.=-++..+..+....
T Consensus 613 ~~~~~~~~e~l~~l~~~----~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 613 PRFTHYTFESIGAILNY----TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHHHHHT----SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 433 56666666652 24444555556667766676643 2333333666666666543
No 68
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.13 E-value=0.00017 Score=67.44 Aligned_cols=210 Identities=14% Similarity=0.197 Sum_probs=142.1
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhcc--ChhhHHHHHHHHhccccCCHHHHH
Q 006763 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNEC--TEWGQVFILDALSRYKAADAREAE 197 (632)
Q Consensus 120 ~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~--~ew~qi~lL~lL~~y~~~~~~~~~ 197 (632)
.|++.+..+|.|.=..|+.||+..+..|....+ ++..+.+.+|+..++.. -|..| .|-+.+.......++...
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltq-eIa~a~G~la~i~Pe~v~ 106 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQ-EIAKAFGQMAKEKPELVK 106 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHH-HHHHHHhHHHHhCHHHHH
Confidence 477888889988888999999999999986654 45556677777766432 22222 233333333333455555
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhc-cCchhHHHHHHHHHHHHHhhCccchh
Q 006763 198 NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILA 276 (632)
Q Consensus 198 ~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Ll-s~~~niryvaL~~l~~i~~~~p~~~~ 276 (632)
.++..+....+-.++-+...-..++-.+.. .+|++...+++. +..++ +++..-|.++|+-|.-+...++..+.
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIar--anP~l~~~v~rd----i~smltskd~~Dkl~aLnFi~alGen~~~yv~ 180 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAK--ANPMLMASIVRD----FMSMLSSKNREDKLTALNFIEAMGENSFKYVN 180 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHH--HCHHHHHHHHHH----HHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHG
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHH--hChHHHHHHHHH----HHHHhcCCChHHHHHHHHHHHHHhccCccccC
Confidence 555555554554455444433333333221 267766654333 34566 46778899999999999998999999
Q ss_pred cccc-eeEeccCCchhHHHHHHHHHHHhcCccc-HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHH
Q 006763 277 HEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRN-IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAI 340 (632)
Q Consensus 277 ~~~~-~f~~l~~dd~~Ik~~kL~lL~~L~n~~N-i~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~ 340 (632)
+++. .|-.+++++.-+|.-+.+.|..++.-+- +..++.+-++-+.+.+..+..+....+++++.
T Consensus 181 PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 181 PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 9886 4567888889999999999999885322 66777777777777777788888888887764
No 69
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.11 E-value=0.00041 Score=77.57 Aligned_cols=303 Identities=15% Similarity=0.123 Sum_probs=194.4
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhcCC-CCcHHHHH-----HHHHHhhcCC-CChHHHhH---HHHHhcCCCc--hh
Q 006763 10 LFTDVVNCMQTENLELKKLVYLYLINYAKS-QPDLAILA-----VNTFVKDSQD-PNPLIRAL---AVRTMGCIRV--DK 77 (632)
Q Consensus 10 lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~-~~el~lL~-----iNtl~kDl~~-~np~ir~l---ALr~L~~I~~--~e 77 (632)
+.+..++++.+.+..+++-+--++.+++.. +++--..+ |..|.+=|.+ +++.++.. ||..|+.... ..
T Consensus 91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~ 170 (584)
T 3l6x_A 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME 170 (584)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHH
T ss_pred CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHH
Confidence 567788999999999999999999999974 45532222 3456666654 45655555 5566665321 24
Q ss_pred hHHHHHHHHHhhh------------------CCCChHHHHHHHHHHHHhhhhccc----cccccchHHHHHHHhc-----
Q 006763 78 ITEYLCDPLQRCL------------------KDDDPYVRKTAAICVAKLYDINAE----LVEDRGFLESLKDLIS----- 130 (632)
Q Consensus 78 i~~~l~~~v~~~L------------------~d~~pyVRK~A~~al~kl~~~~p~----~v~~~~~~~~L~~lL~----- 130 (632)
+++.-++.+.+++ ...++.|++.|+-|+..+-..+++ +++..++++.|..+|.
T Consensus 171 I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~ 250 (584)
T 3l6x_A 171 IVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQ 250 (584)
T ss_dssp HHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcc
Confidence 5555566776655 124689999999999988765443 2333466666666664
Q ss_pred -CCChhHHHHHHHHHHHHHhcC----C--------------------CCchh--ccHHHHHHHHHHhhcc-ChhhHHHHH
Q 006763 131 -DNNPMVVANAVAALAEIEENS----S--------------------RPIFE--ITSHTLSKLLTALNEC-TEWGQVFIL 182 (632)
Q Consensus 131 -D~d~~Vv~~Al~aL~eI~~~~----~--------------------~~~~~--l~~~~~~~Ll~~l~~~-~ew~qi~lL 182 (632)
+.+...+-+|+.+|..++..- + ..... .....++.|+..+..+ ++..|-...
T Consensus 251 ~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa 330 (584)
T 3l6x_A 251 KDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASA 330 (584)
T ss_dssp TCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHH
Confidence 345677888888886655320 0 00011 1234566677777554 677777777
Q ss_pred HHHhccccCCH---HHH------HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccC-
Q 006763 183 DALSRYKAADA---REA------ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA- 252 (632)
Q Consensus 183 ~lL~~y~~~~~---~~~------~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls~- 252 (632)
..|..++..+. ... +..+..+..+|.+.+..|+..|+.++.++...-.+...+ ....++.|+.+|..
T Consensus 331 ~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I---~~g~ip~LV~LL~~~ 407 (584)
T 3l6x_A 331 GAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI---GKHAIPNLVKNLPGG 407 (584)
T ss_dssp HHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH---HHHHHHHHHHTSSSS
T ss_pred HHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH---HhCCHHHHHHHhcCC
Confidence 77777754331 111 245777888999999999999999999876543343333 34677888888853
Q ss_pred --------chhHHHHHHHHHHHHHhhCccchhc---c--cc-eeEeccCC--chhHHHHHHHHHHHhcCcccHHHHHHH
Q 006763 253 --------EPEIQYVALRNINLIVQRRPTILAH---E--IK-VFFCKYND--PIYVKMEKLEIMIKLASDRNIDQVLLE 315 (632)
Q Consensus 253 --------~~niryvaL~~l~~i~~~~p~~~~~---~--~~-~f~~l~~d--d~~Ik~~kL~lL~~L~n~~Ni~~Iv~E 315 (632)
..++..-++..|..|+..++.-.+. . +. ...++.+. ...+++.|--+|..|++.+.....+++
T Consensus 408 ~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk 486 (584)
T 3l6x_A 408 QQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEK 486 (584)
T ss_dssp SCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHT
T ss_pred cccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 2468888999999888766542211 1 11 12233332 567788888888888877665555554
No 70
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00017 Score=72.05 Aligned_cols=182 Identities=14% Similarity=0.070 Sum_probs=129.4
Q ss_pred HHHhhcCCCChHHHhHHHHHhcC-CC--chhhH------HHHHHHHHhhh-CCCChHHHHHHHHHHHHhhhhc--cccc-
Q 006763 50 TFVKDSQDPNPLIRALAVRTMGC-IR--VDKIT------EYLCDPLQRCL-KDDDPYVRKTAAICVAKLYDIN--AELV- 116 (632)
Q Consensus 50 tl~kDl~~~np~ir~lALr~L~~-I~--~~ei~------~~l~~~v~~~L-~d~~pyVRK~A~~al~kl~~~~--p~~v- 116 (632)
.|..-++|++..-|-.|+..|+. +. .+++. ..++..+++.+ +|+++.||..|+.|+..+...- |..-
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45666788999999888888888 63 22332 46788899999 7999999999999999988643 3332
Q ss_pred cc-cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhc-cHHHHHHHHHHhhccChhhHHHHHHHHhccccCCH-
Q 006763 117 ED-RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADA- 193 (632)
Q Consensus 117 ~~-~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~- 193 (632)
.. ..+++.+-..+.|+.+.|..++..++..++..-.+..... ....+..|+..+...++-.+...+.+|.++.....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 11 1356677778899999999888888888877542211111 33467778888876665566677888776653222
Q ss_pred ------HHH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCC
Q 006763 194 ------REA-ENIVERVTPRLQHANCAVVLSAVKMILQQMELITS 231 (632)
Q Consensus 194 ------~~~-~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~ 231 (632)
... ..++..+..++.+.++.|.-.|+.++..+...+.+
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 234 56788888899999999999999988876544443
No 71
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.94 E-value=0.024 Score=60.71 Aligned_cols=134 Identities=16% Similarity=0.254 Sum_probs=109.3
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhh
Q 006763 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCL 90 (632)
Q Consensus 11 f~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L 90 (632)
|-.++..... +...|||+--++..|++.-|++.--++|++..=|.|.+..||.-|+|-|..++-.+.+.-+..-+.++|
T Consensus 31 y~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 31 YQVILDGVKG-GTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLL 109 (507)
T ss_dssp HHHHHHGGGS-CHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHH
Confidence 5556665444 699999999999999999999999999999999999999999999999999988799999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 006763 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (632)
Q Consensus 91 ~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~ 150 (632)
+..++--+...=.++..+++.+|...-. ++...+ .. .+..|.-.++..|.+-...
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk~tl~-~lf~~i---~~-~~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAKGTLG-GLFSQI---LQ-GEDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHH---HH-SCHHHHHHHHHHHHHHGGG
T ss_pred hccchHHHHHHHHHHHHHHhcChHHHHH-HHHHHH---cc-cchHHHHHHHHHHHHHHhh
Confidence 9999888888888888888888865421 233333 33 4667777777777665444
No 72
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.93 E-value=0.055 Score=63.91 Aligned_cols=129 Identities=9% Similarity=0.092 Sum_probs=85.7
Q ss_pred CCCChHHHhHHHHHhcCCCc------hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhh---ccccccccchHHHHH
Q 006763 56 QDPNPLIRALAVRTMGCIRV------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI---NAELVEDRGFLESLK 126 (632)
Q Consensus 56 ~~~np~ir~lALr~L~~I~~------~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~---~p~~v~~~~~~~~L~ 126 (632)
.+++...|-.|+.++++|.. ...++.+++.+. .+.+.+|.||.+|+.++.++... +|+.++ .+++.+-
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~--~vl~~l~ 535 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHPVMIN--SVLPLVL 535 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT--TTHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH--HHHHHHH
Confidence 56677788777888777642 234455555333 34557899999999999987653 455554 4677777
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhc--cChhhHHHHHHHHhccc
Q 006763 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNE--CTEWGQVFILDALSRYK 189 (632)
Q Consensus 127 ~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~--~~ew~qi~lL~lL~~y~ 189 (632)
..|.+ +.|...|..+|..++...+..........+.+|...+.. .+.-.+..+++.+....
T Consensus 536 ~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 536 HALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp HHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 77765 889999999999998764433333444455555555543 34556777777777654
No 73
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.92 E-value=0.00039 Score=73.19 Aligned_cols=217 Identities=13% Similarity=0.113 Sum_probs=146.5
Q ss_pred CChHHHhHHHHHhcCCCc-----hhhH---HHHHHHHHhhhCCCChHHHHHHHHHHHHhhhh-cc---ccccccchHHHH
Q 006763 58 PNPLIRALAVRTMGCIRV-----DKIT---EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NA---ELVEDRGFLESL 125 (632)
Q Consensus 58 ~np~ir~lALr~L~~I~~-----~ei~---~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~-~p---~~v~~~~~~~~L 125 (632)
.++.++-.|..+|.++.. +..+ .-.+|.+.++|.+.++.||..|+.++..+-.. ++ +.+.+.+.++.|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 457777777777766642 2222 24589999999999999999999999988653 22 344445778888
Q ss_pred HHH-hcCCChhHHHHHHHHHHHHHhcCCCCchhc--cHHHHHHHHHHhhccC--hh--hHH---HHHHHHhccccCCHHH
Q 006763 126 KDL-ISDNNPMVVANAVAALAEIEENSSRPIFEI--TSHTLSKLLTALNECT--EW--GQV---FILDALSRYKAADARE 195 (632)
Q Consensus 126 ~~l-L~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l--~~~~~~~Ll~~l~~~~--ew--~qi---~lL~lL~~y~~~~~~~ 195 (632)
.++ +...++.+..+|+.+|..+..........+ ....+..|++.+...+ +| .+. -+|+-|+.+...+++.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 886 566789999999999999876331111122 2345666777765443 34 233 3444444432234433
Q ss_pred HHH-----HHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhhc-cCchhHHHHHHHHHHHHH
Q 006763 196 AEN-----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLL-SAEPEIQYVALRNINLIV 268 (632)
Q Consensus 196 ~~~-----il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~-~~~~~~L~~Ll-s~~~niryvaL~~l~~i~ 268 (632)
... .+..+..+|++.+..+.-+|+.++.++.. .+++..+.+. ..++++|+.|+ ++++.+|-.+...|..|+
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC--CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 332 46677788999999999999999998742 2455444332 23467888888 468899999999999999
Q ss_pred hhCccchh
Q 006763 269 QRRPTILA 276 (632)
Q Consensus 269 ~~~p~~~~ 276 (632)
...|...+
T Consensus 334 ~~~~~~~~ 341 (354)
T 3nmw_A 334 ANRPAKYK 341 (354)
T ss_dssp TTCCGGGC
T ss_pred cCCHHHHh
Confidence 88776543
No 74
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.92 E-value=0.0014 Score=78.79 Aligned_cols=432 Identities=13% Similarity=0.114 Sum_probs=210.0
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC-------chhhHHHHHH
Q 006763 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKITEYLCD 84 (632)
Q Consensus 12 ~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~-------~~ei~~~l~~ 84 (632)
..+++.+.+++-..|+-+.-++..+ +.+|+....+...+.+ +.++.+|-.|+.+|-+.. .++--+.+-.
T Consensus 19 ~~~l~~~~~p~~~~r~~Ae~~L~~~-~~~p~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~ 94 (1049)
T 3m1i_C 19 DQVVSTFYQGSGVQQKQAQEILTKF-QDNPDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN 94 (1049)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHH-HHSTTGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHH-HhCchHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH
Confidence 3455555566777898899998877 5566755555555554 568899988888876542 2333444444
Q ss_pred HHHhhhCC----C-----ChHHHHHHHHHHHHhhhh-ccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhc----
Q 006763 85 PLQRCLKD----D-----DPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN---- 150 (632)
Q Consensus 85 ~v~~~L~d----~-----~pyVRK~A~~al~kl~~~-~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~---- 150 (632)
.+.+.+.+ + +++||.+.+.++..+.+. .|+.-+ ++++.+..+++ .++...-+++.+|..+++.
T Consensus 95 ~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp--~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~ 171 (1049)
T 3m1i_C 95 FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP--EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDF 171 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch--HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHh
Confidence 44444443 2 589999999999999887 465444 46777777776 4554444444444444321
Q ss_pred CCCCc--------hhccHHHHHHHHHH----hhc-cChhhHHHHHHHHhccccCCH-HH--HHHHHHHHHHhhcCCCHHH
Q 006763 151 SSRPI--------FEITSHTLSKLLTA----LNE-CTEWGQVFILDALSRYKAADA-RE--AENIVERVTPRLQHANCAV 214 (632)
Q Consensus 151 ~~~~~--------~~l~~~~~~~Ll~~----l~~-~~ew~qi~lL~lL~~y~~~~~-~~--~~~il~~v~~~L~~~n~aV 214 (632)
+.... .......+..++.. +.. .++=.....|+.+..|...-+ .. ...+++.+...+. .++.+
T Consensus 172 ~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~ 250 (1049)
T 3m1i_C 172 SAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDT 250 (1049)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhH
Confidence 11100 01111122222222 111 122234456666654432211 11 0123443332111 25666
Q ss_pred HHHHHHHHHHhhhc-cCCh-----HHHHHH----HHh----cccchhh----hc-cC--chhHHHHHHHHHHHHHhhCcc
Q 006763 215 VLSAVKMILQQMEL-ITST-----DVVRNL----CKK----MAPPLVT----LL-SA--EPEIQYVALRNINLIVQRRPT 273 (632)
Q Consensus 215 v~eaik~i~~~~~~-i~~~-----~~~~~~----~~~----~~~~L~~----Ll-s~--~~niryvaL~~l~~i~~~~p~ 273 (632)
.-.|+.++..+... +... +.+..+ +.. +.++... +. .+ +.+..--..+.+..+...+..
T Consensus 251 ~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~ 330 (1049)
T 3m1i_C 251 RAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRA 330 (1049)
T ss_dssp HHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 66777776665421 1111 111111 110 1111110 11 11 222211122223333322222
Q ss_pred ch------hccc----c-eeEeccCCchhHHHHHHHHHHHhcCc--------c----cHHHHHHHHHHhhhhc-------
Q 006763 274 IL------AHEI----K-VFFCKYNDPIYVKMEKLEIMIKLASD--------R----NIDQVLLEFKEYATEV------- 323 (632)
Q Consensus 274 ~~------~~~~----~-~f~~l~~dd~~Ik~~kL~lL~~L~n~--------~----Ni~~Iv~EL~~yl~~~------- 323 (632)
.+ .+++ . .+.|...++..+...+++....++.. . -+..++.-+...+...
T Consensus 331 ~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~ 410 (1049)
T 3m1i_C 331 LLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVE 410 (1049)
T ss_dssp HHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEE
T ss_pred HHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeee
Confidence 22 2222 1 12244456777888999988888761 1 1233343333332110
Q ss_pred ------------CH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh------chhhHHHHHHHHHHHHhhCccc
Q 006763 324 ------------DV---DFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK------VNYVVQEAIIVIKDIFRRYPNT 382 (632)
Q Consensus 324 ------------d~---~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~------~~~v~~e~i~~l~~ilr~~p~~ 382 (632)
|. +.++.+-..+..++...+. .++..+++.+... .....+.++..+..+.....+.
T Consensus 411 dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~---~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~ 487 (1049)
T 3m1i_C 411 NDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI---DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSED 487 (1049)
T ss_dssp CTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHH
T ss_pred CCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHH---HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCch
Confidence 11 2233334455555554433 3444444443321 1123344455555443322211
Q ss_pred -----HHHHHHHHHHhhccC--ChhhH--HHHHHHHHhcccCccC-CH---HHHHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 006763 383 -----YESIIATLCESLDTL--DEPEA--KASMIWIIGEYAERID-NA---DELLESFLESFPEEPAQVQLQLLTATVKL 449 (632)
Q Consensus 383 -----~~~ii~~L~~~l~~i--~~p~a--~~~~iWiLGEy~~~i~-~~---~~~l~~l~~~f~~e~~~vq~~iLta~~Kl 449 (632)
...++..+....+.. +++.. +..++|++|.|++.+. ++ +.+++.+++.+.+.++.||...-.|+.++
T Consensus 488 ~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l 567 (1049)
T 3m1i_C 488 TEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKI 567 (1049)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 122333333222211 12333 4468999999998653 22 34666677777777899999999999998
Q ss_pred hhcCC
Q 006763 450 FLKKP 454 (632)
Q Consensus 450 ~~~~p 454 (632)
.-.++
T Consensus 568 ~~~~~ 572 (1049)
T 3m1i_C 568 VQKCK 572 (1049)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 76543
No 75
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.91 E-value=0.00036 Score=71.62 Aligned_cols=187 Identities=12% Similarity=0.035 Sum_probs=134.1
Q ss_pred CCCcchhHHHHHhhcCCC------------cchHHHHHHHHHHhcCCCCcHHHH-----HHHHHHh-hcCCCChHHHhHH
Q 006763 5 KDVSSLFTDVVNCMQTEN------------LELKKLVYLYLINYAKSQPDLAIL-----AVNTFVK-DSQDPNPLIRALA 66 (632)
Q Consensus 5 ~Dvs~lf~~vi~l~~s~d------------~~~Krl~YLyl~~~~~~~~el~lL-----~iNtl~k-Dl~~~np~ir~lA 66 (632)
.|....+.+++..+.+++ .+.|..+.--+..+.+. .|.+.. .+..|.+ -|.++++.+|..|
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~A 102 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHH
Confidence 455666788888887753 24555565555555553 332222 3445667 8999999999999
Q ss_pred HHHhcCCC--chhhHH-----HHHHHHHhhhCC-CChHHHHHHHHHHHHhhhhccc---cccccchHHHHHHHhcCCChh
Q 006763 67 VRTMGCIR--VDKITE-----YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPM 135 (632)
Q Consensus 67 Lr~L~~I~--~~ei~~-----~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~~~p~---~v~~~~~~~~L~~lL~D~d~~ 135 (632)
+++|+++. +++.-+ -.++++.++|.+ +++-||++|+.|+..+.+-+|. .+.+.+.++.|..+|.+.++.
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~ 182 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK 182 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 99999984 343333 356788888884 6899999999999999886654 333456788999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCchhc-cHHHHHHHHHHhhccChhhHHHHHHHHhccccCC
Q 006763 136 VVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAAD 192 (632)
Q Consensus 136 Vv~~Al~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~ 192 (632)
|...|+.+|..++..++.....+ ....+..|+..|...++-.|...++.|..+....
T Consensus 183 v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 183 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 99999999999987654322111 2345677788787777778888888887765543
No 76
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.87 E-value=0.015 Score=67.85 Aligned_cols=124 Identities=10% Similarity=0.092 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHhhCcccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCccCCHHHHHHHHhhhCCCCCHHHHHHH
Q 006763 363 YVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQL 442 (632)
Q Consensus 363 ~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~~~~~~l~~l~~~f~~e~~~vq~~i 442 (632)
.|.+.++..+..|.-..|+. +..+++.+..-.+|.+|..++|.+|.-+--..+ +++++.+..-..+.+..|+...
T Consensus 593 ~VRraAViaLGlI~~g~~e~----v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~D~d~~Vrq~A 667 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYTT----VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTKDPVDFVRQAA 667 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCSS----HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHccCCCHHHHHHH
Confidence 34444444444443334433 333444444445788999999999987643333 3334433333467889999999
Q ss_pred HHHHHHHhhcCCCC---ChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcC
Q 006763 443 LTATVKLFLKKPTE---GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLST 491 (632)
Q Consensus 443 Lta~~Kl~~~~p~e---~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~ 491 (632)
+.|+..+.....+. .+..+++.+.+.....+.|+..+=.|++-+.++..
T Consensus 668 i~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 668 MIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp HHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 99999998876543 36677777777644335688888888888888765
No 77
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.83 E-value=0.00073 Score=71.11 Aligned_cols=218 Identities=13% Similarity=0.142 Sum_probs=131.8
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCchhc--cHHHHHHHHHHhhccChhhHHHHHHHHhccccC-CHHHHHH-----HHHHHH
Q 006763 133 NPMVVANAVAALAEIEENSSRPIFEI--TSHTLSKLLTALNECTEWGQVFILDALSRYKAA-DAREAEN-----IVERVT 204 (632)
Q Consensus 133 d~~Vv~~Al~aL~eI~~~~~~~~~~l--~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~-~~~~~~~-----il~~v~ 204 (632)
++.+..+|..+|..++..+......+ ....+..|+..|...++-.|......|..+... +++.... .+..+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 46677888888888875442222222 234577788878777777777766666665543 3332222 355566
Q ss_pred Hh-hcCCCHHHHHHHHHHHHHhhhccCChHHHHHHH--HhcccchhhhccC-chhHHHHHHHHHHHHHhhCccchhcccc
Q 006763 205 PR-LQHANCAVVLSAVKMILQQMELITSTDVVRNLC--KKMAPPLVTLLSA-EPEIQYVALRNINLIVQRRPTILAHEIK 280 (632)
Q Consensus 205 ~~-L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~--~~~~~~L~~Lls~-~~niryvaL~~l~~i~~~~p~~~~~~~~ 280 (632)
.+ +++.+..+...|+.++.++... +++....+. ...+++|+.++.. ++.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~--~~~nk~~i~~~~Gai~~Lv~lL~~~~~~------------------------- 229 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAH--CTENKADICAVDGALAFLVGTLTYRSQT------------------------- 229 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHSTTHHHHHHHHTTCCCSS-------------------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcc--ChhhhHHHHHhcCcHHHHHHHhccCCCc-------------------------
Confidence 65 4556778888888888876421 233222222 2344555666532 111
Q ss_pred eeEeccCCchhHHHHHHHHHHHhc-----CcccHHH-----HHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhH----
Q 006763 281 VFFCKYNDPIYVKMEKLEIMIKLA-----SDRNIDQ-----VLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA---- 346 (632)
Q Consensus 281 ~f~~l~~dd~~Ik~~kL~lL~~L~-----n~~Ni~~-----Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~---- 346 (632)
+...++..+.-+|..++ +++|... .+..|.+.+.+.+.+.++.++.+|+.++...+...
T Consensus 230 -------~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 302 (354)
T 3nmw_A 230 -------NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW 302 (354)
T ss_dssp -------SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred -------ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 00123344444444443 2333333 35667777777888899999999999885332222
Q ss_pred -HHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHH
Q 006763 347 -ERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYE 384 (632)
Q Consensus 347 -~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~ 384 (632)
.-++..|++++..+...+..++...+.++....|+.++
T Consensus 303 ~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHh
Confidence 23478888888888888888888899999988887654
No 78
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.77 E-value=0.00057 Score=74.40 Aligned_cols=215 Identities=14% Similarity=0.125 Sum_probs=143.9
Q ss_pred CChHHHhHHHHHhcCCC---c--hhhH---HHHHHHHHhhhCCCChHHHHHHHHHHHHhhhh-cc---ccccccchHHHH
Q 006763 58 PNPLIRALAVRTMGCIR---V--DKIT---EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NA---ELVEDRGFLESL 125 (632)
Q Consensus 58 ~np~ir~lALr~L~~I~---~--~ei~---~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~-~p---~~v~~~~~~~~L 125 (632)
.|+.++-.|..+|.++. . +..+ .-.+|.+.++|.+.++.||..|+.++..+-.. ++ +.+.+.+.++.|
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 45666766666665553 2 2233 34589999999999999999999999988653 23 344445778888
Q ss_pred HHH-hcCCChhHHHHHHHHHHHHHhcCCCCchhc--cHHHHHHHHHHhhcc--Chh--hHHH---HHHHHhccccCCHHH
Q 006763 126 KDL-ISDNNPMVVANAVAALAEIEENSSRPIFEI--TSHTLSKLLTALNEC--TEW--GQVF---ILDALSRYKAADARE 195 (632)
Q Consensus 126 ~~l-L~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l--~~~~~~~Ll~~l~~~--~ew--~qi~---lL~lL~~y~~~~~~~ 195 (632)
.++ +...++.+..+|+.+|..++.........+ ....+..|++.|... .+| .+.. +|+-|+.|...+++.
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 371 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Confidence 886 456788999999999998876331111112 234566666666543 344 2333 444444432234443
Q ss_pred HHH-----HHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHH-Hhcccchhhhc-cCchhHHHHHHHHHHHHH
Q 006763 196 AEN-----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLL-SAEPEIQYVALRNINLIV 268 (632)
Q Consensus 196 ~~~-----il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~-~~~~~~L~~Ll-s~~~niryvaL~~l~~i~ 268 (632)
... .+..+..+|++.+..|..+|+.++.++.. .+++....+. ..++++|+.++ ++++.++-.+...|..|+
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS--SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 332 45667788999999999999999998752 2455444332 24567888888 468899999999999999
Q ss_pred hhCccc
Q 006763 269 QRRPTI 274 (632)
Q Consensus 269 ~~~p~~ 274 (632)
..+|..
T Consensus 450 ~~~p~k 455 (458)
T 3nmz_A 450 ANRPAK 455 (458)
T ss_dssp TCCSCC
T ss_pred cCCHhh
Confidence 887753
No 79
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.72 E-value=0.0057 Score=57.27 Aligned_cols=196 Identities=14% Similarity=0.149 Sum_probs=148.1
Q ss_pred ccCCchhHHHHHHHHHHHhcC--cccHHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhc
Q 006763 285 KYNDPIYVKMEKLEIMIKLAS--DRNIDQVLLEFKEYATE-VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV 361 (632)
Q Consensus 285 l~~dd~~Ik~~kL~lL~~L~n--~~Ni~~Iv~EL~~yl~~-~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~ 361 (632)
+.+|-..+++-+|.++..++. ++-++..+.+|+..++. .......++.+++|.+|.--|......+..+..-...+.
T Consensus 41 LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd 120 (253)
T 2db0_A 41 LDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGD 120 (253)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred hccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCC
Confidence 434447899999999998875 56688899999988764 456777888999999998888888888888888888887
Q ss_pred hhhHHHHHHHHHHHHhhCcccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCccC-CHHHHHHHHhhhCCCCCHHHHH
Q 006763 362 NYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-NADELLESFLESFPEEPAQVQL 440 (632)
Q Consensus 362 ~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~-~~~~~l~~l~~~f~~e~~~vq~ 440 (632)
+.+.=....++..|.|.||+....++..+...+.+-+ ..-+.+++-++|-.|+--. ...-.|..+..-+.+.+..||.
T Consensus 121 ~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd-~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRa 199 (253)
T 2db0_A 121 EKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKN-REDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRA 199 (253)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSS-HHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHH
T ss_pred ccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhH
Confidence 7777777889999999999998888888877776433 3336666666666654210 1111244555566788999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHH
Q 006763 441 QLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIY 485 (632)
Q Consensus 441 ~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~~y 485 (632)
..+.++.+++..+|. .++.+...++. . ++.+.+|+-...+-
T Consensus 200 SaVEtL~~lA~~npk--lRkii~~kl~e-~-~D~S~lv~~~V~eg 240 (253)
T 2db0_A 200 SAVEALVHLATLNDK--LRKVVIKRLEE-L-NDTSSLVNKTVKEG 240 (253)
T ss_dssp HHHHHHHHHHTSCHH--HHHHHHHHHHH-C-CCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHH--HHHHHHHHHHH-h-cCcHHHHHHHHHHH
Confidence 999999999999985 89999988886 3 45666776655553
No 80
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.71 E-value=0.0023 Score=62.31 Aligned_cols=178 Identities=12% Similarity=0.085 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHH
Q 006763 309 IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE---RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYES 385 (632)
Q Consensus 309 i~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~---~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ 385 (632)
++.+++.+.+-+.+.|.-+.-+++++++.+-...| ..+....+++.++++.+.+-...++..++..+ +--.....
T Consensus 73 ~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~~~~~~ 150 (265)
T 3b2a_A 73 LERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QPLEDSKL 150 (265)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBSCCCHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--CcccchHH
Confidence 45566777777788899999999999999998865 45666788999999977788888898888877 33344566
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHhcccCccC---CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHH
Q 006763 386 IIATLCESLDTLDEPEAKASMIWIIGEYAERID---NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMI 462 (632)
Q Consensus 386 ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~---~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v 462 (632)
++..+...+ .-.+++.+++.+-.+-|.+.... ...++++.+-+-...+++.++--.|.++-+++.+--.+...+-+
T Consensus 151 V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~ 229 (265)
T 3b2a_A 151 VRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL 229 (265)
T ss_dssp HHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH
T ss_pred HHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH
Confidence 777777777 44678888887777766665543 34566666655566789999999999999998764223355555
Q ss_pred HHHHH----hhhcCCCChHHHhhHHHHHHHhc
Q 006763 463 QVVLN----NATVETDNPDLRDRAYIYWRLLS 490 (632)
Q Consensus 463 ~~ll~----~~~~~s~~~dvrdRA~~y~~LL~ 490 (632)
.+++. .++ ---.|.+|+||+-...++.
T Consensus 230 ~~~~~~v~~l~~-~~~~~~~~~ka~~v~~~le 260 (265)
T 3b2a_A 230 LKISRIVDGLVY-REGAPIIRLKAKKVSDLID 260 (265)
T ss_dssp HHHHHHHHHGGG-CSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcCChhHHHHHHHHHHHHH
Confidence 55544 332 2357999999998777654
No 81
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.70 E-value=0.00029 Score=72.33 Aligned_cols=141 Identities=12% Similarity=0.134 Sum_probs=114.1
Q ss_pred hhHHHHH-hhcCCCcchHHHHHHHHHHhcCCCCcHHHH-----HHHHHHhhcC-CCChHHHhHHHHHhcCCC--chhhHH
Q 006763 10 LFTDVVN-CMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKITE 80 (632)
Q Consensus 10 lf~~vi~-l~~s~d~~~Krl~YLyl~~~~~~~~el~lL-----~iNtl~kDl~-~~np~ir~lALr~L~~I~--~~ei~~ 80 (632)
+++.++. ++.+++..+|.-+--.+.+++..+++..-. ++..|.+=++ ++++.+|..|+.+|+++. .+.-.+
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 5677888 999999999999999999999888764333 2344555555 458899999999999983 333222
Q ss_pred -----HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccc---ccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 006763 81 -----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (632)
Q Consensus 81 -----~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~---v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~ 150 (632)
..++.+.++|.+.++-||+.|+.++..+...+++. +.+.++++.|..+|...|+.|+..|+.+|..|...
T Consensus 162 ~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 46778999999999999999999999998877754 33468899999999999999999999999988754
No 82
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.68 E-value=0.016 Score=68.72 Aligned_cols=421 Identities=9% Similarity=0.047 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHhhhhccccccccchHHHHHHHhcC-----CChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHh
Q 006763 96 YVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD-----NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL 170 (632)
Q Consensus 96 yVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D-----~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l 170 (632)
-.||.|.-++..++...++.+-. .+.+.+...+.. .+...+-+|+.++..|...-....-......+. ++..+
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l 513 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEI 513 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHS
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhc
Confidence 46888888888888877743322 355666666653 566778888888888865322111111122222 33344
Q ss_pred h--ccChhhHHHHHHHHhcccc---CCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccc
Q 006763 171 N--ECTEWGQVFILDALSRYKA---ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPP 245 (632)
Q Consensus 171 ~--~~~ew~qi~lL~lL~~y~~---~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~ 245 (632)
. +.++..+...+.++.+|.. .+++....+++.+...+ + +.|.-.|+.++..+... ..+.+..++..+...
T Consensus 514 ~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~ 588 (971)
T 2x1g_F 514 PYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNA 588 (971)
T ss_dssp CTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHH
T ss_pred CccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHH
Confidence 4 3477777778888887763 23344556677777777 2 55667777777665432 222233333344444
Q ss_pred hhhhccC---chhHHHHHHHHHHHHHhhCc-cchhcc--------cceeE-eccCC--chhHH---HHHHHHHHHhcC--
Q 006763 246 LVTLLSA---EPEIQYVALRNINLIVQRRP-TILAHE--------IKVFF-CKYND--PIYVK---MEKLEIMIKLAS-- 305 (632)
Q Consensus 246 L~~Lls~---~~niryvaL~~l~~i~~~~p-~~~~~~--------~~~f~-~l~~d--d~~Ik---~~kL~lL~~L~n-- 305 (632)
+..++.+ +.+.+..+++.+..++..-| +-+.++ +..+. +..++ +..-+ ...++.|..+..
T Consensus 589 l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l 668 (971)
T 2x1g_F 589 CHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSL 668 (971)
T ss_dssp HHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhc
Confidence 4555543 56888899999999887543 211111 11111 11121 11122 234444443321
Q ss_pred -------------cccHHHHHHHHHH----hhhh--cCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhc--hhh
Q 006763 306 -------------DRNIDQVLLEFKE----YATE--VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV--NYV 364 (632)
Q Consensus 306 -------------~~Ni~~Iv~EL~~----yl~~--~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~--~~v 364 (632)
.+.+..+++++.. -+.. .+.++.+.+.+.++.++..+.+...-++..+++++...- ...
T Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~ 748 (971)
T 2x1g_F 669 NTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC 748 (971)
T ss_dssp TC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC
T ss_pred CCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc
Confidence 1112222222222 2222 367899999999999888765554445555555544221 111
Q ss_pred HHHHHHHHHHHHhhCcc---cH---HHH----HHHHHHhhccC------ChhhHHHHHHHHHhcccCc-----c--CC-H
Q 006763 365 VQEAIIVIKDIFRRYPN---TY---ESI----IATLCESLDTL------DEPEAKASMIWIIGEYAER-----I--DN-A 420 (632)
Q Consensus 365 ~~e~i~~l~~ilr~~p~---~~---~~i----i~~L~~~l~~i------~~p~a~~~~iWiLGEy~~~-----i--~~-~ 420 (632)
..++..+..+++.+.. .. ... +....+.+... +.|+.+....-+++.+... . +. -
T Consensus 749 -~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l 827 (971)
T 2x1g_F 749 -APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAY 827 (971)
T ss_dssp -HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCH
T ss_pred -hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccH
Confidence 2356677777775432 11 111 22222223322 2566666665555543321 1 11 3
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC-C--------hHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcC
Q 006763 421 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE-G--------PQQMIQVVLNNATVETDNPDLRDRAYIYWRLLST 491 (632)
Q Consensus 421 ~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e-~--------~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~~ 491 (632)
..++...+..+...+..+....++.+.++....+.. . ...++..++...........+.+-|...++|...
T Consensus 828 ~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~ 907 (971)
T 2x1g_F 828 DRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRK 907 (971)
T ss_dssp HHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHH
Confidence 445555555444444444444555555543332211 0 1233344444322233445566777777777766
Q ss_pred CHHHHHhhhcc--CCCCCCCCCCcCCHHHHHHHHHhc
Q 006763 492 DPEAAKDVVLA--EKPVISDDSNQLDPSLLDELLANI 526 (632)
Q Consensus 492 ~~~~~~~ivl~--~~p~~~~~~~~~~~~~l~~l~~~~ 526 (632)
.++.++.-+.. ..|.+. ...++++..++++..+
T Consensus 908 ~~~~~~~~l~~~l~~~~~p--~~~~~~~~~~~f~~~l 942 (971)
T 2x1g_F 908 YAAEMAVWMKSLMSTPNFP--TQLITDADKTRYTALI 942 (971)
T ss_dssp HHHHHHHHHHHHHTSSSCS--CSSSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhcccCCC--CCcCCHHHHHHHHHHH
Confidence 66655443321 122222 1235666666666654
No 83
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.65 E-value=0.077 Score=63.12 Aligned_cols=426 Identities=11% Similarity=0.044 Sum_probs=215.2
Q ss_pred CCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCC----Cch-------hhHHHHHHHHHh
Q 006763 20 TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVD-------KITEYLCDPLQR 88 (632)
Q Consensus 20 s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I----~~~-------ei~~~l~~~v~~ 88 (632)
+.|...|+-++-++..+-+ +||--..+..-+.+ -...++.+|-.|+.+|-+. ... .+-+.++..+.+
T Consensus 19 ~sd~~~r~~A~~~L~~~q~-sp~aw~~~~~iL~~-~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~ 96 (980)
T 3ibv_A 19 SVGPIIKQQATDFIGSLRS-SSTGWKICHEIFSE-KTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKE 96 (980)
T ss_dssp TSCHHHHHHHHHHHHHHHH-STTHHHHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHc-ChhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHH
Confidence 4488999999999988754 47744444444432 1223789998888777642 222 223344444444
Q ss_pred hh-CCCChHHHHHHHHHHHHhhhh-ccccccccchHHHHHHHhcCCCh-hHHHHHHHHHHHHHhcCCCCc----------
Q 006763 89 CL-KDDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNP-MVVANAVAALAEIEENSSRPI---------- 155 (632)
Q Consensus 89 ~L-~d~~pyVRK~A~~al~kl~~~-~p~~v~~~~~~~~L~~lL~D~d~-~Vv~~Al~aL~eI~~~~~~~~---------- 155 (632)
.- .+..++||.|.+.++..++.. .|+.-+ ++++.+..++...++ .++...+..|..|.+.-....
T Consensus 97 ~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp--~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r 174 (980)
T 3ibv_A 97 LSFLDEPAYISNAVQHLLTLLFLQLYPSNWN--DFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQK 174 (980)
T ss_dssp CCSTTSCTHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHhCcccCc--hHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhh
Confidence 21 135789999999999999875 576555 377777777764444 344444555553333211000
Q ss_pred ----hhccHHH-----HHHHHHHhhc----cChhhHHHHHHHHhccccCCHHH-H--HHHHHHHHHhhcCCCHHHHHHHH
Q 006763 156 ----FEITSHT-----LSKLLTALNE----CTEWGQVFILDALSRYKAADARE-A--ENIVERVTPRLQHANCAVVLSAV 219 (632)
Q Consensus 156 ----~~l~~~~-----~~~Ll~~l~~----~~ew~qi~lL~lL~~y~~~~~~~-~--~~il~~v~~~L~~~n~aVv~eai 219 (632)
.+..... +...+..+.. .++=.....|+.+..|...-+-. . ..+++.+...|.. +.+.-.|+
T Consensus 175 ~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ 252 (980)
T 3ibv_A 175 DNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAAC 252 (980)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHH
T ss_pred hHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHH
Confidence 0111111 1222222222 23334567888888877642221 1 3566766666654 67788888
Q ss_pred HHHHHhhhccCChHHHHHHHHh--cccchhhhc--cCchhHHH--HH-----HHHHHHHHhhCc------------cchh
Q 006763 220 KMILQQMELITSTDVVRNLCKK--MAPPLVTLL--SAEPEIQY--VA-----LRNINLIVQRRP------------TILA 276 (632)
Q Consensus 220 k~i~~~~~~i~~~~~~~~~~~~--~~~~L~~Ll--s~~~niry--va-----L~~l~~i~~~~p------------~~~~ 276 (632)
.++..+...-.+++....++.. +.+.+..+. ..+.++.- .- -..+..+ ...| ..+.
T Consensus 253 ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~ 331 (980)
T 3ibv_A 253 ETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLY 331 (980)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHH
Confidence 8877664322233221122111 111111222 23444321 10 0112222 2334 2222
Q ss_pred cccc-eeEeccCCchhHHHHHHHHHHHhcC-----------cccHHHHHHHHH----Hhhh---h---cC----------
Q 006763 277 HEIK-VFFCKYNDPIYVKMEKLEIMIKLAS-----------DRNIDQVLLEFK----EYAT---E---VD---------- 324 (632)
Q Consensus 277 ~~~~-~f~~l~~dd~~Ik~~kL~lL~~L~n-----------~~Ni~~Iv~EL~----~yl~---~---~d---------- 324 (632)
..+. .+.|..+++..|-..+++.+..... ..-...++..|+ ..+. + .+
T Consensus 332 ~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F 411 (980)
T 3ibv_A 332 NLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEF 411 (980)
T ss_dssp HTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHH
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHH
Confidence 3333 3456655666777777776665442 111223444443 2222 1 01
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHhhhc-------hhhHHHHHHHHHHHHhhCcc----------cH
Q 006763 325 VDFVRKAVRAIGRCAIKLERAAERCIS----VLLELIKIKV-------NYVVQEAIIVIKDIFRRYPN----------TY 383 (632)
Q Consensus 325 ~~~~~~~i~aIg~la~k~~~~~~~~v~----~Ll~ll~~~~-------~~v~~e~i~~l~~ilr~~p~----------~~ 383 (632)
.+||+++-..+..++.-.+ +.+++ .+..++.... ....+.++..+..+-...++ ..
T Consensus 412 ~e~Rk~l~~l~d~~~~l~~---~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~l 488 (980)
T 3ibv_A 412 QEMRKKLKIFQDTINSIDS---SLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSP 488 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCB
T ss_pred HHHHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchh
Confidence 1355555422222332222 33444 4444443221 11222223332222111111 11
Q ss_pred HHHHHHHHHhhc----cCChhhHHHHHHHHHhcccCccCC----HHHHHHHHhh--hCCCCCHHHHHHHHHHHHHHhhcC
Q 006763 384 ESIIATLCESLD----TLDEPEAKASMIWIIGEYAERIDN----ADELLESFLE--SFPEEPAQVQLQLLTATVKLFLKK 453 (632)
Q Consensus 384 ~~ii~~L~~~l~----~i~~p~a~~~~iWiLGEy~~~i~~----~~~~l~~l~~--~f~~e~~~vq~~iLta~~Kl~~~~ 453 (632)
..++..+...++ ....|.++..++|++|.|++.+.. -+.+|..++. .+...+..||...-.++.++.-.+
T Consensus 489 p~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 489 TVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp CHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 234444444432 235688899999999999998753 3567777888 666667789988888888886655
Q ss_pred CC
Q 006763 454 PT 455 (632)
Q Consensus 454 p~ 455 (632)
..
T Consensus 569 ~~ 570 (980)
T 3ibv_A 569 KK 570 (980)
T ss_dssp TT
T ss_pred hH
Confidence 43
No 84
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.56 E-value=0.15 Score=61.98 Aligned_cols=139 Identities=9% Similarity=0.156 Sum_probs=88.1
Q ss_pred CCCcchhHHHHHhh---cCC--CcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC-----
Q 006763 5 KDVSSLFTDVVNCM---QTE--NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR----- 74 (632)
Q Consensus 5 ~Dvs~lf~~vi~l~---~s~--d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~----- 74 (632)
.++.....++.+++ .++ +...|+-+.-++..+- .+|+....+.-.|. -.+.++.+|-.|+.+|-+..
T Consensus 4 ~~~~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~-~~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 4 DQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFK-EKCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH-HHCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred hhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH-hCchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 45555555554433 333 6667999999998874 44554444444454 35668899999887665431
Q ss_pred --chhhHHHHHHHHHhhhC-------CCChHHHHHHHHHHHHhhhhc-cccccccchHHHHHHHhcCCChhHHHHHHHHH
Q 006763 75 --VDKITEYLCDPLQRCLK-------DDDPYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNNPMVVANAVAAL 144 (632)
Q Consensus 75 --~~ei~~~l~~~v~~~L~-------d~~pyVRK~A~~al~kl~~~~-p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL 144 (632)
.++--+.+-..+.+.+. +..++||.+.+.++..+.+.+ |+.-+ ++++.+..++.. ++...-.++..|
T Consensus 81 ~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp--~ll~~L~~~~~~-~~~~~e~~L~iL 157 (1204)
T 3a6p_A 81 GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP--DMLIELDTLSKQ-GETQTELVMFIL 157 (1204)
T ss_dssp GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHHHHHT-CHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccch--HHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 23333444444444443 257999999999999998864 65544 477777777765 555555677777
Q ss_pred HHHHh
Q 006763 145 AEIEE 149 (632)
Q Consensus 145 ~eI~~ 149 (632)
..+++
T Consensus 158 ~~L~E 162 (1204)
T 3a6p_A 158 LRLAE 162 (1204)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 85
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00062 Score=68.84 Aligned_cols=192 Identities=11% Similarity=0.110 Sum_probs=123.6
Q ss_pred CCCCCCCcchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcH---------HHHHHHHHHhhcCCCChHHHhHHHHHhc
Q 006763 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDL---------AILAVNTFVKDSQDPNPLIRALAVRTMG 71 (632)
Q Consensus 1 mtlG~Dvs~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el---------~lL~iNtl~kDl~~~np~ir~lALr~L~ 71 (632)
|+-+.|..+-=...-.-+.|++-..|+=||-.+.......+.. ..-.+..+.|-+.|.|..+...|+.+++
T Consensus 1 m~~~e~~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~ 80 (278)
T 4ffb_C 1 MSGEEEVDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALN 80 (278)
T ss_dssp ----------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCCcchhhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 5555554433111335788999999999999988776544321 1112346788889999999999888876
Q ss_pred CCC------------chhhHHHHHHHHH-hhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHH
Q 006763 72 CIR------------VDKITEYLCDPLQ-RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (632)
Q Consensus 72 ~I~------------~~ei~~~l~~~v~-~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~ 138 (632)
.+. ....+..+++.+. +++.|+.+-+|..|..|+..+.......- .+.+.+...+..++|.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~---~~~e~l~~~l~~Knpkv~~ 157 (278)
T 4ffb_C 81 SLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT---QSVELVIPFFEKKLPKLIA 157 (278)
T ss_dssp HHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH---HHHHHHGGGGGCSCHHHHH
T ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhccCHHHHH
Confidence 431 1234455666555 67999999999999999988876532211 2567788889999999999
Q ss_pred HHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 006763 139 NAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA 218 (632)
Q Consensus 139 ~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~ea 218 (632)
.++..|..+...-+..... .......++..+..++.|+|+.|.-+|
T Consensus 158 ~~l~~l~~~l~~fg~~~~~----------------------------------~k~~l~~i~~~l~k~l~d~~~~VR~aA 203 (278)
T 4ffb_C 158 AAANCVYELMAAFGLTNVN----------------------------------VQTFLPELLKHVPQLAGHGDRNVRSQT 203 (278)
T ss_dssp HHHHHHHHHHHHHTTTTCC----------------------------------HHHHHHHHGGGHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcCC----------------------------------chhHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 8888877664332110000 011123445566678999999999999
Q ss_pred HHHHHHhhhcc
Q 006763 219 VKMILQQMELI 229 (632)
Q Consensus 219 ik~i~~~~~~i 229 (632)
++++..++..+
T Consensus 204 ~~l~~~ly~~~ 214 (278)
T 4ffb_C 204 MNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHHh
Confidence 99998775544
No 86
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0042 Score=62.62 Aligned_cols=183 Identities=14% Similarity=0.109 Sum_probs=114.1
Q ss_pred HHhhhCCCChHHHHHHHHHHHHhhhhccccccc-------cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCC--ch
Q 006763 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVED-------RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP--IF 156 (632)
Q Consensus 86 v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~-------~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~--~~ 156 (632)
+..-|.|+++-.|+.|+..+.+++...+..... ..+...+.+.+.|.|..|+..|+.++..+....+.. ..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 567899999999999999999999865533221 124567888999999999999999998887643211 01
Q ss_pred h----ccHHHHHHHHHH-hhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCC
Q 006763 157 E----ITSHTLSKLLTA-LNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITS 231 (632)
Q Consensus 157 ~----l~~~~~~~Ll~~-l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~ 231 (632)
. .....+..|+.. +.+..+-.....++.+..+..... ....+++.+.+.++|.|+-|+.+++.++..++.....
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 1 112233444443 444444443334444433321100 0134567788899999999999999998876543211
Q ss_pred hH-HHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHh
Q 006763 232 TD-VVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQ 269 (632)
Q Consensus 232 ~~-~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~ 269 (632)
.. -.+.....+.+.+..+++ +++++|-.+...+..+..
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 10 012222335555666664 789999999998887764
No 87
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.30 E-value=0.24 Score=58.89 Aligned_cols=415 Identities=13% Similarity=0.131 Sum_probs=202.9
Q ss_pred CChHHHhHHHHHhcCCCc-hhhHHHHHHHHHhhhCCC---ChHHHHHHHHHHHHhhh-hccc----cccccchHHHHHHH
Q 006763 58 PNPLIRALAVRTMGCIRV-DKITEYLCDPLQRCLKDD---DPYVRKTAAICVAKLYD-INAE----LVEDRGFLESLKDL 128 (632)
Q Consensus 58 ~np~ir~lALr~L~~I~~-~ei~~~l~~~v~~~L~d~---~pyVRK~A~~al~kl~~-~~p~----~v~~~~~~~~L~~l 128 (632)
.++..|.-|...|-.+.. |+-... ....+.++ ++.||--|+..+-...+ +.++ .. ..+.+.+-.+
T Consensus 20 sd~~~r~~A~~~L~~~q~sp~aw~~----~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~--~~lr~~ll~~ 93 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSSSTGWKI----CHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLEL--QMIRDSVWSY 93 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHSTTHHHH----HHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHH--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcChhHHHH----HHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHH--HHHHHHHHHH
Confidence 368888888888887753 444433 33444442 79999999998876665 2333 21 1344444444
Q ss_pred hc-----CCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccCh-hhHHHHHHHHhccc--------cCCHH
Q 006763 129 IS-----DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTE-WGQVFILDALSRYK--------AADAR 194 (632)
Q Consensus 129 L~-----D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~e-w~qi~lL~lL~~y~--------~~~~~ 194 (632)
+. +..+.|......++.+|.....+..|.- .+..++..+...++ .....+|++|.... +.+.+
T Consensus 94 l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~---~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~ 170 (980)
T 3ibv_A 94 IKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWND---FFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDV 170 (980)
T ss_dssp HHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTT---HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHH
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCch---HHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHH
Confidence 43 2345566666667777776654455653 23444444433233 56667777776211 11211
Q ss_pred H---------------HHHHHHHHHHhh----cCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccCchh
Q 006763 195 E---------------AENIVERVTPRL----QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPE 255 (632)
Q Consensus 195 ~---------------~~~il~~v~~~L----~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls~~~n 255 (632)
. ...+.+.+...| ++.++.++-.+.+++..|..-+ +...+-. ..+.+.+..+++ +++
T Consensus 171 ~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~~--~~ll~~l~~~L~-~~~ 246 (980)
T 3ibv_A 171 QIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIVN--EPCMNLLYSFLQ-IEE 246 (980)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHHC--HHHHHHHHHHTT-SHH
T ss_pred HHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhhc--chHHHHHHHHcC-ChH
Confidence 0 111233333333 3467788888888888776543 2222210 123333334444 489
Q ss_pred HHHHHHHHHHHHHhhCccchhc--c---c--c-eeE--eccCCchhHHHHHHHHHHHhc-------C-c-----------
Q 006763 256 IQYVALRNINLIVQRRPTILAH--E---I--K-VFF--CKYNDPIYVKMEKLEIMIKLA-------S-D----------- 306 (632)
Q Consensus 256 iryvaL~~l~~i~~~~p~~~~~--~---~--~-~f~--~l~~dd~~Ik~~kL~lL~~L~-------n-~----------- 306 (632)
+|-.|+++|..|+.+..+.-.+ - + . ++. ...++|..+...--+++..++ + +
T Consensus 247 ~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~ 326 (980)
T 3ibv_A 247 LRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENC 326 (980)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhH
Confidence 9999999999999876431100 0 0 0 111 111344443322222222221 1 1
Q ss_pred -ccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHH----hhhch----------
Q 006763 307 -RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL---------ERAAERCISVLLELI----KIKVN---------- 362 (632)
Q Consensus 307 -~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~---------~~~~~~~v~~Ll~ll----~~~~~---------- 362 (632)
..+..+++-++.+....++++...++.-........ ......++..+++.+ ....+
T Consensus 327 ~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~e 406 (980)
T 3ibv_A 327 SFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSE 406 (980)
T ss_dssp HHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchh
Confidence 334566777777777667776665544443333221 111122333333322 22110
Q ss_pred ------hhHHHHHHHHHHHHh-hCcccHHH----HHHHHH-HhhccC--ChhhHHHHHHHHHhcccCccCC---------
Q 006763 363 ------YVVQEAIIVIKDIFR-RYPNTYES----IIATLC-ESLDTL--DEPEAKASMIWIIGEYAERIDN--------- 419 (632)
Q Consensus 363 ------~v~~e~i~~l~~ilr-~~p~~~~~----ii~~L~-~~l~~i--~~p~a~~~~iWiLGEy~~~i~~--------- 419 (632)
..+.++. .+.+.+. -.|+..-. .+..++ +.+..- ..-+-..+.++.+|-+|+-+.+
T Consensus 407 d~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~ 485 (980)
T 3ibv_A 407 EEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVD 485 (980)
T ss_dssp THHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSS
T ss_pred HHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCccc
Confidence 1112222 2333222 23443322 222221 222100 1122356666666666555432
Q ss_pred --HHHHHHHHhhh----CC-CCCHHHHHHHHHHHHHH---hhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHH
Q 006763 420 --ADELLESFLES----FP-EEPAQVQLQLLTATVKL---FLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWR 487 (632)
Q Consensus 420 --~~~~l~~l~~~----f~-~e~~~vq~~iLta~~Kl---~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~ 487 (632)
.+.+++.+..- +. ..++.||.+...++.+. +.+.|. -....+..++....-.+.+..||-||..-..
T Consensus 486 ~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~-~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~ 562 (980)
T 3ibv_A 486 KSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESA-AIPALIEYFVGPRGIHNTNERVRPRAWYLFY 562 (980)
T ss_dssp CCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCT-THHHHHHHHTSTTTTTCCCTTTHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCch-hHHHHHHHHhccccccCCChhHHHHHHHHHH
Confidence 23344333321 22 56799999888888776 334443 2556666666511123567889999865433
No 88
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.27 E-value=0.14 Score=57.11 Aligned_cols=133 Identities=17% Similarity=0.114 Sum_probs=95.5
Q ss_pred hhcCCCcchHHHHHHHHHHhcCCCCcH-----HHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchh--------------
Q 006763 17 CMQTENLELKKLVYLYLINYAKSQPDL-----AILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-------------- 77 (632)
Q Consensus 17 l~~s~d~~~Krl~YLyl~~~~~~~~el-----~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~e-------------- 77 (632)
+-.+.-++.||=+-+.+.-+++..++. +--.+++|++|-. |.-+...+|.||.++-.++
T Consensus 30 l~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~--D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~ 107 (651)
T 3grl_A 30 VASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRS--DSEIIGYALDTLYNIISNDEEEEVEENSTRQSE 107 (651)
T ss_dssp HHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTT--CHHHHHHHHHHHHHHHCCC--------------
T ss_pred HhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCCCCcccccccccccch
Confidence 456788999999999999999988774 4456889999964 4455556888886653221
Q ss_pred -----hHH------HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccc-----cchHHHHHHHhcCCChhHHHHHH
Q 006763 78 -----ITE------YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED-----RGFLESLKDLISDNNPMVVANAV 141 (632)
Q Consensus 78 -----i~~------~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~-----~~~~~~L~~lL~D~d~~Vv~~Al 141 (632)
..+ .-++.+..+|.+.+.|||-.|+.++.-+....|+.+.+ ++=++.|..+|.|..-.+...|+
T Consensus 108 ~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneal 187 (651)
T 3grl_A 108 DLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGV 187 (651)
T ss_dssp CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHH
Confidence 112 22566777788888888888888888888777763332 23457777888887777777788
Q ss_pred HHHHHHHhcC
Q 006763 142 AALAEIEENS 151 (632)
Q Consensus 142 ~aL~eI~~~~ 151 (632)
.+|.++...+
T Consensus 188 lLL~~Lt~~n 197 (651)
T 3grl_A 188 LLLQALTRSN 197 (651)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 8888887665
No 89
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.24 E-value=0.29 Score=58.53 Aligned_cols=159 Identities=9% Similarity=0.056 Sum_probs=88.6
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHhhh--hcCHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHhh---------hchh
Q 006763 296 KLEIMIKLASDRNIDQVLLEFKEYAT--EVDVDFVRKAVRAIGRCAIKLERA-AERCISVLLELIKI---------KVNY 363 (632)
Q Consensus 296 kL~lL~~L~n~~Ni~~Iv~EL~~yl~--~~d~~~~~~~i~aIg~la~k~~~~-~~~~v~~Ll~ll~~---------~~~~ 363 (632)
.|+.+..+....-...+.+.|..++. ..+-.-+..++.++|.++...... ...++..++..+.. ....
T Consensus 436 ~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~ 515 (1049)
T 3m1i_C 436 VLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAV 515 (1049)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHH
Confidence 34444443333333344444445554 245556778889999888765433 22334444444322 1111
Q ss_pred hHHHHH---HHHHHHHhhCcccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCccC-------------CHHHHHHHH
Q 006763 364 VVQEAI---IVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-------------NADELLESF 427 (632)
Q Consensus 364 v~~e~i---~~l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~-------------~~~~~l~~l 427 (632)
+...+. ..+...++.+|+....++..+.+.+.+ ..+.++..++|.+..+++... ..+.+++.+
T Consensus 516 v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~-~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l 594 (1049)
T 3m1i_C 516 VASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE-THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDI 594 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 221222 233344556666667777877777654 246778888888777665422 234555555
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHhhcCCC
Q 006763 428 LESFPEEPAQVQLQLLTATVKLFLKKPT 455 (632)
Q Consensus 428 ~~~f~~e~~~vq~~iLta~~Kl~~~~p~ 455 (632)
..-+...+.+.+..++.|++.+....++
T Consensus 595 ~~~~~~~~~~~~~~~~eai~~ii~~~~~ 622 (1049)
T 3m1i_C 595 QKTTADLQPQQVHTFYKACGIIISEERS 622 (1049)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHcCCC
Confidence 5444445666677888888888877663
No 90
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.17 E-value=0.14 Score=57.12 Aligned_cols=301 Identities=13% Similarity=0.117 Sum_probs=183.8
Q ss_pred HhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcC-CChhHHHHHHHHHHHHHhcCCCC-----------
Q 006763 87 QRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD-NNPMVVANAVAALAEIEENSSRP----------- 154 (632)
Q Consensus 87 ~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D-~d~~Vv~~Al~aL~eI~~~~~~~----------- 154 (632)
.|+-..+-.-=||.|+.++-.+-+.+|..|...++-..+..|=+| .|..++..++-.|..+...+..+
T Consensus 28 ~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~ 107 (651)
T 3grl_A 28 DRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSE 107 (651)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------
T ss_pred HHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccch
Confidence 333345667779999999999999999988764554444444445 57778888888876554322110
Q ss_pred ---c-----hhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHH-------HHHHHHHhhcCCCHHHHHHHH
Q 006763 155 ---I-----FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-------IVERVTPRLQHANCAVVLSAV 219 (632)
Q Consensus 155 ---~-----~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~-------il~~v~~~L~~~n~aVv~eai 219 (632)
. |--....+.-|++.|...+.|...+.+++|.......++..++ -+..+...|.+....|.-|++
T Consensus 108 ~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneal 187 (651)
T 3grl_A 108 DLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGV 187 (651)
T ss_dssp CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHH
Confidence 0 1112455677888888888898888888888776555553332 345677788988999999999
Q ss_pred HHHHHhhhccCChHHHHHHH-HhcccchhhhccCch-----hHHHHHHHHHHHHHhhCc---cchhc--ccc----eeEe
Q 006763 220 KMILQQMELITSTDVVRNLC-KKMAPPLVTLLSAEP-----EIQYVALRNINLIVQRRP---TILAH--EIK----VFFC 284 (632)
Q Consensus 220 k~i~~~~~~i~~~~~~~~~~-~~~~~~L~~Lls~~~-----niryvaL~~l~~i~~~~p---~~~~~--~~~----~f~~ 284 (632)
-++..+.+ .+++..+-+. .++...|..++..+. .+--=.|..|..|++.++ .+|.. ++. .|..
T Consensus 188 lLL~~Lt~--~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~ 265 (651)
T 3grl_A 188 LLLQALTR--SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEV 265 (651)
T ss_dssp HHHHHHHT--TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCC
T ss_pred HHHHHHhc--CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCC
Confidence 99998865 3555444332 355667777774322 333334556666666664 34432 222 1211
Q ss_pred ccCCc-----hhHH--HHHHHHHHHhcCcccH--------H-----HHHHHHHHhhh--hcCHHHHHHHHHHHHHHHHhh
Q 006763 285 KYNDP-----IYVK--MEKLEIMIKLASDRNI--------D-----QVLLEFKEYAT--EVDVDFVRKAVRAIGRCAIKL 342 (632)
Q Consensus 285 l~~dd-----~~Ik--~~kL~lL~~L~n~~Ni--------~-----~Iv~EL~~yl~--~~d~~~~~~~i~aIg~la~k~ 342 (632)
.++. ..++ ...++++-.++.++|- . .++..|...+. .....++.+++.++|.+....
T Consensus 266 -~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN 344 (651)
T 3grl_A 266 -GDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGC 344 (651)
T ss_dssp -CSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred -CccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCC
Confidence 1111 1122 2367777777776542 1 14556666654 357889999999999877543
Q ss_pred hhhH--------------HHHHHHHHHHHhhhch-hhHHHHHHHHHHHHhhCcccHHHHHHHH
Q 006763 343 ERAA--------------ERCISVLLELIKIKVN-YVVQEAIIVIKDIFRRYPNTYESIIATL 390 (632)
Q Consensus 343 ~~~~--------------~~~v~~Ll~ll~~~~~-~v~~e~i~~l~~ilr~~p~~~~~ii~~L 390 (632)
+..- .-.+..++.++..... .+.-++...++..+.++++.+..++..+
T Consensus 345 ~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~l 407 (651)
T 3grl_A 345 QVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTL 407 (651)
T ss_dssp HHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhc
Confidence 3211 1234445555433332 3556777888888888887776665543
No 91
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.15 E-value=0.5 Score=56.40 Aligned_cols=107 Identities=10% Similarity=0.098 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHhhcCC--CChHHHhHHHHHhcCCC---ch----hhHHHHHHHHHhhhC-----CCChHHHHHHHHHHHH
Q 006763 42 DLAILAVNTFVKDSQD--PNPLIRALAVRTMGCIR---VD----KITEYLCDPLQRCLK-----DDDPYVRKTAAICVAK 107 (632)
Q Consensus 42 el~lL~iNtl~kDl~~--~np~ir~lALr~L~~I~---~~----ei~~~l~~~v~~~L~-----d~~pyVRK~A~~al~k 107 (632)
|..-...+.+.+-+.+ .+-..|-.|+=++|+|. .+ ..++.+++.+..++. |..+.||.+++.++.+
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 5555566777766654 45666666666666653 22 345567777777776 4677889999999987
Q ss_pred hhh---hccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhc
Q 006763 108 LYD---INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (632)
Q Consensus 108 l~~---~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~ 150 (632)
..+ .+|+.++ ..++.|-..+.|.+|.|..+|..+|..|++.
T Consensus 527 y~~wl~~~~~~L~--~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 527 YPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp CHHHHHHCHHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 655 4666665 3566677777788999999999999999864
No 92
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.31 E-value=0.27 Score=57.99 Aligned_cols=219 Identities=16% Similarity=0.195 Sum_probs=162.9
Q ss_pred HHHHHHhhcCCCChHHHhHH---HHHhcCCCchhhHHHHHHHHHhhhCCC-ChHHHHHHHHHHHHhhhhccccccc--cc
Q 006763 47 AVNTFVKDSQDPNPLIRALA---VRTMGCIRVDKITEYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAELVED--RG 120 (632)
Q Consensus 47 ~iNtl~kDl~~~np~ir~lA---Lr~L~~I~~~ei~~~l~~~v~~~L~d~-~pyVRK~A~~al~kl~~~~p~~v~~--~~ 120 (632)
..+.+..-+.|++..||..| +.++....+|+-+..++|.+.+.+.+. .+-.+-.|.-++-++....|+.+.. ..
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 35777778899999999775 455555677877799999999999765 6888888888899999888877652 35
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhc--cccC-CHHHHH
Q 006763 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSR--YKAA-DAREAE 197 (632)
Q Consensus 121 ~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~--y~~~-~~~~~~ 197 (632)
+++.+..++-|.-+.|-.+|..++..+|.--.. .++ .+.+..|++.+.++++ .-..++.|+. |... +.....
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n--~d~-~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~ 250 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDN--KDI-ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS 250 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC--TTT-GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC--cch-hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH
Confidence 778899999999999999999999999864321 122 2357788888888866 3344566653 3322 233333
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhcc--CchhHHHHHHHHHHHHHhh
Q 006763 198 NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQR 270 (632)
Q Consensus 198 ~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls--~~~niryvaL~~l~~i~~~ 270 (632)
-+...+..-|+....++-..++-++-++...+.+|.....+.-++.+.+-+... ++||.|-++-+.+..|...
T Consensus 251 ~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 251 IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 445555566788889999999888888877788998888887777777766663 6999999998888777543
No 93
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.20 E-value=1.2 Score=53.18 Aligned_cols=69 Identities=12% Similarity=0.182 Sum_probs=48.1
Q ss_pred HHHHHHhhhC-CCChHHHHHHHHHHHHhhhh-ccccccccchHHHH-HHHhcCCChhHHHHHHHHHHHHHhcCC
Q 006763 82 LCDPLQRCLK-DDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESL-KDLISDNNPMVVANAVAALAEIEENSS 152 (632)
Q Consensus 82 l~~~v~~~L~-d~~pyVRK~A~~al~kl~~~-~p~~v~~~~~~~~L-~~lL~D~d~~Vv~~Al~aL~eI~~~~~ 152 (632)
+...+.+++. ..++-+.+.+..|+.++... +.+.+-+.++++.+ ..+|. ++.+..+|+-.|++|...+.
T Consensus 207 Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~ 278 (1073)
T 3gjx_A 207 IFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSV 278 (1073)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccc
Confidence 3344444453 46788888888888887765 34555455788877 57774 67788899999999987643
No 94
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.17 E-value=0.17 Score=60.45 Aligned_cols=141 Identities=8% Similarity=0.076 Sum_probs=81.4
Q ss_pred HHHHHHhhcCCCC--hHH---HhHHHHHhcCCCch----hhHHHHHHHHHhhhCCC-----ChHHHHHHHHHHHHhh---
Q 006763 47 AVNTFVKDSQDPN--PLI---RALAVRTMGCIRVD----KITEYLCDPLQRCLKDD-----DPYVRKTAAICVAKLY--- 109 (632)
Q Consensus 47 ~iNtl~kDl~~~n--p~i---r~lALr~L~~I~~~----ei~~~l~~~v~~~L~d~-----~pyVRK~A~~al~kl~--- 109 (632)
....+++-+++++ ... -+.|+++|++-..+ ..++.+++.+..+..++ .+.||.+.+..+.+.-
T Consensus 478 ~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl 557 (1073)
T 3gjx_A 478 MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL 557 (1073)
T ss_dssp HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH
Confidence 3455665554432 222 25588888443333 45666666666666554 3455665556666643
Q ss_pred hhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCch--------hccHHHHHHHHHHhhccChhhHHHH
Q 006763 110 DINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF--------EITSHTLSKLLTALNECTEWGQVFI 181 (632)
Q Consensus 110 ~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~--------~l~~~~~~~Ll~~l~~~~ew~qi~l 181 (632)
..+|+.++. .+..|-+.+.|.+++|..+|+.+|..|+.+=+.... ..+...+..+-.......+-.+..+
T Consensus 558 ~~h~~~L~~--vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~l 635 (1073)
T 3gjx_A 558 RAHWKFLKT--VVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTF 635 (1073)
T ss_dssp HHCHHHHHH--HHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHH
T ss_pred HhCHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 347776663 567777778899999999999999999865322111 1112222222222334455566666
Q ss_pred HHHHhccc
Q 006763 182 LDALSRYK 189 (632)
Q Consensus 182 L~lL~~y~ 189 (632)
.+.++...
T Consensus 636 yeav~~vi 643 (1073)
T 3gjx_A 636 YEAVGYMI 643 (1073)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67666544
No 95
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.17 E-value=0.75 Score=45.67 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=70.8
Q ss_pred HHhHHHHHhcC---CCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHH
Q 006763 62 IRALAVRTMGC---IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (632)
Q Consensus 62 ir~lALr~L~~---I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~ 138 (632)
.+-..|+.+-. -..|++.+.+++.+.....|++..|||-.+--+...++.++++.. ..++.|..+|+|.|+.|+-
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~--~~l~~L~~Ll~d~d~~V~K 108 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP--HVINVVSMLLRDNSAQVIK 108 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcCCCHHHHH
Confidence 55555544433 357899999999999999999999999999999999999999887 4889999999999999998
Q ss_pred HHHHHHHHH
Q 006763 139 NAVAALAEI 147 (632)
Q Consensus 139 ~Al~aL~eI 147 (632)
.++.+...+
T Consensus 109 ~~I~~~~~i 117 (257)
T 3gs3_A 109 RVIQACGSI 117 (257)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877665
No 96
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.02 E-value=0.37 Score=50.71 Aligned_cols=123 Identities=13% Similarity=0.192 Sum_probs=84.2
Q ss_pred HHhHHHHHhcCC---CchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHH
Q 006763 62 IRALAVRTMGCI---RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (632)
Q Consensus 62 ir~lALr~L~~I---~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~ 138 (632)
.+...|+.+-.+ ..|++.+.+++.|.....|++..|||-.+--+...+..+++.+. ..++.|..+|.|.|+.|+-
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~--~~l~~L~~LL~d~d~~V~K 118 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL--KLIANLNMLLRDENVNVVK 118 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcCCCHHHHH
Confidence 455555555553 56889999999999999999999999999999999999999886 4789999999999999986
Q ss_pred HHHHHHHHHH--------hcCC-----CCchhccHHHHHHHHHHhhccChhhHHHHHHHHh
Q 006763 139 NAVAALAEIE--------ENSS-----RPIFEITSHTLSKLLTALNECTEWGQVFILDALS 186 (632)
Q Consensus 139 ~Al~aL~eI~--------~~~~-----~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~ 186 (632)
.++.+...|. .+.. ...|......-..+++.+...++=..+..++++.
T Consensus 119 ~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle 179 (386)
T 3o2t_A 119 KAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVE 179 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 6665554443 2222 1345544444445555443334333444444444
No 97
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=95.85 E-value=1.9 Score=46.35 Aligned_cols=320 Identities=15% Similarity=0.133 Sum_probs=162.8
Q ss_pred HHHHhc-CCChhHHHHHHHHHHHHHhcCCC--C---chhccHHHHHHHHHHhhccChhhH----HHHHHHHhccccCCHH
Q 006763 125 LKDLIS-DNNPMVVANAVAALAEIEENSSR--P---IFEITSHTLSKLLTALNECTEWGQ----VFILDALSRYKAADAR 194 (632)
Q Consensus 125 L~~lL~-D~d~~Vv~~Al~aL~eI~~~~~~--~---~~~l~~~~~~~Ll~~l~~~~ew~q----i~lL~lL~~y~~~~~~ 194 (632)
+-.+|. ..+..++...+..+.++...++- . .|.-.+.....++......++|.. ..++.++....+.+.+
T Consensus 82 ~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~~~~~ 161 (480)
T 1ho8_A 82 LIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVK 161 (480)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHH
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCCccHh
Confidence 334443 45666777777777777766540 1 111111122234443333455543 3344445444455555
Q ss_pred HHHHHHH--HHHHhhcCC-CHHHHHHHHHHHHHhhhccCChHHHHHHHHh---cccchhhhc----------------cC
Q 006763 195 EAENIVE--RVTPRLQHA-NCAVVLSAVKMILQQMELITSTDVVRNLCKK---MAPPLVTLL----------------SA 252 (632)
Q Consensus 195 ~~~~il~--~v~~~L~~~-n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~---~~~~L~~Ll----------------s~ 252 (632)
....+++ .+...|++. +....+-|++++-.++. .++....+.+. ..+++..++ ++
T Consensus 162 ~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~---~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~ 238 (480)
T 1ho8_A 162 LVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV---IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSN 238 (480)
T ss_dssp HHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT---SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc---chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCC
Confidence 5555665 444555552 33334455555543321 22222211110 112221111 11
Q ss_pred --chhHHHHHHHHHHHHHhhCccch----hcccc----eeE-eccCCchhHHHHHHHHHHHhcCcc------cHHHHH--
Q 006763 253 --EPEIQYVALRNINLIVQRRPTIL----AHEIK----VFF-CKYNDPIYVKMEKLEIMIKLASDR------NIDQVL-- 313 (632)
Q Consensus 253 --~~niryvaL~~l~~i~~~~p~~~----~~~~~----~f~-~l~~dd~~Ik~~kL~lL~~L~n~~------Ni~~Iv-- 313 (632)
...++|-++-++..+.-. |++. ..++. .+. ++...-.-|=|.++.+|.++.+.. ++.+++
T Consensus 239 ~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~ 317 (480)
T 1ho8_A 239 HLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL 317 (480)
T ss_dssp CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHH
Confidence 245789888888877543 2221 11111 111 122222556667777888877754 223211
Q ss_pred HHHHHh---hh---hcCHHHHHHHHHHHHHHHHhhh--hhHHHHHHHH-HHHHhhhchhhHHHHHHHHHHHHhhCcccHH
Q 006763 314 LEFKEY---AT---EVDVDFVRKAVRAIGRCAIKLE--RAAERCISVL-LELIKIKVNYVVQEAIIVIKDIFRRYPNTYE 384 (632)
Q Consensus 314 ~EL~~y---l~---~~d~~~~~~~i~aIg~la~k~~--~~~~~~v~~L-l~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~ 384 (632)
..+... +. -.|+++..++-.--..+.+.+. +..+.|..-+ -..|+-+..|-.+..|.- =.++..+-.-
T Consensus 318 ~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~E---Na~kf~e~~~ 394 (480)
T 1ho8_A 318 GNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSD---NIDEFKKDNY 394 (480)
T ss_dssp HCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHH---HSGGGSSGGG
T ss_pred ccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHH---HHHHHHhcch
Confidence 212222 21 3577776655433333333332 2334444332 233343444555555541 1122223333
Q ss_pred HHHHHHHHhhcc---------CChhhHHHHHHHHHhcccCccCCHHHHHHHH------hhhCCCCCHHHHHHHHHHHHHH
Q 006763 385 SIIATLCESLDT---------LDEPEAKASMIWIIGEYAERIDNADELLESF------LESFPEEPAQVQLQLLTATVKL 449 (632)
Q Consensus 385 ~ii~~L~~~l~~---------i~~p~a~~~~iWiLGEy~~~i~~~~~~l~~l------~~~f~~e~~~vq~~iLta~~Kl 449 (632)
.++..|++.|++ -++|...+.++.=||||..+.+....+++.+ .+-...++++||.+.|.|+-|+
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 578888888863 2467789999999999999988877776654 3445678999999999999998
Q ss_pred hh
Q 006763 450 FL 451 (632)
Q Consensus 450 ~~ 451 (632)
..
T Consensus 475 m~ 476 (480)
T 1ho8_A 475 IG 476 (480)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 98
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.62 E-value=0.34 Score=47.30 Aligned_cols=166 Identities=14% Similarity=0.106 Sum_probs=107.4
Q ss_pred CcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHh-hhCCCChHHHHH
Q 006763 22 NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQR-CLKDDDPYVRKT 100 (632)
Q Consensus 22 d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~-~L~d~~pyVRK~ 100 (632)
..-.|-+--.+...+...+.+-. ...++.=.+|+...+|.+|...++.. . . .+.+.+.++. ...|.+..||-.
T Consensus 50 ~~gf~~~~~~a~~~~~~~~~~~~---~~la~~L~~~~~deVR~~Av~lLg~~-~-~-~~~~L~~ir~~va~D~~WrVre~ 123 (240)
T 3l9t_A 50 EHGFKEEEQRALTDYKSNDGEYI---KKLAFLAYQSDVYQVRMYAVFLFGYL-S-K-DKEILIFMRDEVSKDNNWRVQEV 123 (240)
T ss_dssp ----CHHHHHHHHHHHHSCHHHH---HHHHHHHHTCSSHHHHHHHHHHHHHT-T-T-SHHHHHHHHHTGGGCSCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhCCHHHH---HHHHHHHHhCcchHHHHHHHHHHHhc-c-C-cHHHHHHHHHHhCCCCCccHHHH
Confidence 33444444444444444332322 23344444677789999999999988 3 2 3778888887 778999999999
Q ss_pred HHHHHHHhhh-hccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHh-hccChhhH
Q 006763 101 AAICVAKLYD-INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL-NECTEWGQ 178 (632)
Q Consensus 101 A~~al~kl~~-~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l-~~~~ew~q 178 (632)
++.++.++.. .+|+. .++.+.....|.|+-|...|+-.+.--+.. + .+...+..+-.++..+ .+.+.+.|
T Consensus 124 lA~a~~~~~~~~~pe~-----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~--~~k~dp~~ll~iL~~L~~D~s~yVr 195 (240)
T 3l9t_A 124 LAKAFDEFCKKIEYKK-----ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-P--YFKENPNEAIRRIADLKEDVSEYVR 195 (240)
T ss_dssp HHHHHHHHHHHHCTTT-----THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-T--TTTTCHHHHHHHHHTTTTCSCHHHH
T ss_pred HHHHHHHHHHhcCHHH-----HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-c--hhhcCHHHHHHHHHHhcCChHHHHH
Confidence 9999999986 88884 346788889999999988775543221111 1 1334444455555554 35677788
Q ss_pred HHHHHHHhccccCCHHHHHHHHH
Q 006763 179 VFILDALSRYKAADAREAENIVE 201 (632)
Q Consensus 179 i~lL~lL~~y~~~~~~~~~~il~ 201 (632)
-.|=..|..|...+++-...+++
T Consensus 196 KSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 196 KSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhCHHHHHHHHH
Confidence 88877787777777765544443
No 99
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.54 E-value=0.56 Score=50.36 Aligned_cols=211 Identities=15% Similarity=0.144 Sum_probs=130.0
Q ss_pred cCchhHHHHHHHHHHHHHhhCccchhcccc-eeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHH
Q 006763 251 SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVR 329 (632)
Q Consensus 251 s~~~niryvaL~~l~~i~~~~p~~~~~~~~-~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~ 329 (632)
++++..+-++-+.|.+....+|++-..-+. .+.+..++|..||..++.-|..+|..+++..|.+-|...+...|..- .
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd~~E-~ 117 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDDSAE-F 117 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCCHHH-H
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccchHH-H
Confidence 456777888888888888888877655444 34344578899999999999999999999999999999888655332 2
Q ss_pred HHH-HHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhC------cccHHHHHHHHHHhhccCChhhH
Q 006763 330 KAV-RAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY------PNTYESIIATLCESLDTLDEPEA 402 (632)
Q Consensus 330 ~~i-~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~------p~~~~~ii~~L~~~l~~i~~p~a 402 (632)
.+| +++-.+-. .+....+..+++.+..+.+.++..++..|..-+..- .+..+.++..+-+.+++++..+.
T Consensus 118 ~~V~~sL~sllk---~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF 194 (507)
T 3u0r_A 118 NLVNNALLSIFK---MDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEF 194 (507)
T ss_dssp HHHHHHHHHHHH---HCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHH
T ss_pred HHHHHHHHHHHh---cChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHH
Confidence 222 33333332 344566777777777777777777888777766553 24456667777777777776665
Q ss_pred HHHHHHHHhcccCc--cCCHHHHHHHHhhh------CCCCCHH---HHHHHHHHHHHHhhcCCCCChHHHHHHHHHh
Q 006763 403 KASMIWIIGEYAER--IDNADELLESFLES------FPEEPAQ---VQLQLLTATVKLFLKKPTEGPQQMIQVVLNN 468 (632)
Q Consensus 403 ~~~~iWiLGEy~~~--i~~~~~~l~~l~~~------f~~e~~~---vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~ 468 (632)
. .+.-+++.+.-. +..-.++++.+.+. |.-.+++ --.+.++.+..+|.+... ..+.+.++.+.
T Consensus 195 ~-L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~--StkFv~y~~~k 268 (507)
T 3u0r_A 195 V-LFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVH--STRFVTYFCEQ 268 (507)
T ss_dssp H-HHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBC--CHHHHHHHHHH
T ss_pred H-HHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHh
Confidence 3 333555554322 11123444444332 4322322 223445556666666554 34455554443
No 100
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.54 E-value=0.87 Score=53.68 Aligned_cols=250 Identities=16% Similarity=0.202 Sum_probs=155.8
Q ss_pred CCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccc--cccc--cchHHHHHHHhcCCChhHHHHHHHHHHHH
Q 006763 72 CIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE--LVED--RGFLESLKDLISDNNPMVVANAVAALAEI 147 (632)
Q Consensus 72 ~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~--~v~~--~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI 147 (632)
.+....+-..+...+++.+.++..- -.|+.++..+++..+- -++. -.+++.+.++..|++..|..+|-.+...|
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~ 122 (986)
T 2iw3_A 45 NIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISI 122 (986)
T ss_dssp SCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3333344447888899999996444 8888888888866532 2221 02457777788899999999998888888
Q ss_pred HhcCCCCchhccHHHHHHHHHHhhccChh-hHHHHHHHHhccccCCHHHH----HHHHHHHHHhhcCCCHHHHHHHHHHH
Q 006763 148 EENSSRPIFEITSHTLSKLLTALNECTEW-GQVFILDALSRYKAADAREA----ENIVERVTPRLQHANCAVVLSAVKMI 222 (632)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew-~qi~lL~lL~~y~~~~~~~~----~~il~~v~~~L~~~n~aVv~eaik~i 222 (632)
...-+.. .+ ...+..|++.+....-| .++-.|+++..+....++.. .+++..+..++...-+-|--.|.+++
T Consensus 123 ~~~~~~~--a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~ 199 (986)
T 2iw3_A 123 VNAVNPV--AI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAM 199 (986)
T ss_dssp HHHSCGG--GH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHhCCHH--HH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHH
Confidence 7665442 22 45677888888777789 56777888877764444433 35666666777788888888888888
Q ss_pred HHhhhccCChHHHHHHHHhcccchhhhccCchhHHHHHHHHHHHHHhhCccchhccc-----c----ee-EeccCCchhH
Q 006763 223 LQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEI-----K----VF-FCKYNDPIYV 292 (632)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~~~~L~~Lls~~~niryvaL~~l~~i~~~~p~~~~~~~-----~----~f-~~l~~dd~~I 292 (632)
..+...+.|.+.. ..++.|+..+.+..+ +=.++..|... .|...+ . .+ ..+.+....+
T Consensus 200 ~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~----~~~~~~~l~~~---tfv~~v~~~~l~~~~p~l~r~l~~~~~~~ 267 (986)
T 2iw3_A 200 TKATETVDNKDIE-----RFIPSLIQCIADPTE----VPETVHLLGAT---TFVAEVTPATLSIMVPLLSRGLNERETGI 267 (986)
T ss_dssp HHHGGGCCCTTTG-----GGHHHHHHHHHCTTH----HHHHHHHHTTC---CCCSCCCHHHHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHhcCCCcchh-----hhHHHHHHHhcChhh----hHHHHHHhhcC---eeEeeecchhHHHHHHHHHhhhccCcchh
Confidence 8776656665432 234444444433333 22334444432 111110 0 01 1345667889
Q ss_pred HHHHHHHHHHhc----CcccHHHHHHHHHHhh-----hhcCHHHHHHHHHHHHHH
Q 006763 293 KMEKLEIMIKLA----SDRNIDQVLLEFKEYA-----TEVDVDFVRKAVRAIGRC 338 (632)
Q Consensus 293 k~~kL~lL~~L~----n~~Ni~~Iv~EL~~yl-----~~~d~~~~~~~i~aIg~l 338 (632)
||++.=++-+|| |+.-+..-+..|+.=+ +-.|++.|..+-+++..+
T Consensus 268 ~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 268 KRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred heeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 998877776666 3444555555555322 236888887666665544
No 101
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.48 E-value=0.22 Score=49.78 Aligned_cols=182 Identities=13% Similarity=0.032 Sum_probs=114.9
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHH----HHHhcCCChhHHHHHHHHHHHHHhcCCCC
Q 006763 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL----KDLISDNNPMVVANAVAALAEIEENSSRP 154 (632)
Q Consensus 79 ~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L----~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~ 154 (632)
..++-+.+...+.+++.--|-+|+-.+.+....+|+.+.. .+|.+ .-.+.|+|+.|...++-+|..+...-...
T Consensus 44 ~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~ 121 (266)
T 2of3_A 44 GNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT 121 (266)
T ss_dssp HTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3344456778888899988888998888888777765432 23433 33456999999999988888764321111
Q ss_pred chhcc----HHHHHHHHHHhhccChhhHH---HHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q 006763 155 IFEIT----SHTLSKLLTALNECTEWGQV---FILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQME 227 (632)
Q Consensus 155 ~~~l~----~~~~~~Ll~~l~~~~ew~qi---~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~ 227 (632)
.+.+. ...+..|+..+.+..+=..- .+|+.+....| ...+.+.+...++|.|.=+.-||+..+..+.+
T Consensus 122 ~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-----~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 122 ETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-----PLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp TCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 11221 23466777777666543222 23444443222 23566777778899999999999988887654
Q ss_pred ccCChHHHHHHHHhcc---cchhhhcc-CchhHHHHHHHHHHHHHhhCcc
Q 006763 228 LITSTDVVRNLCKKMA---PPLVTLLS-AEPEIQYVALRNINLIVQRRPT 273 (632)
Q Consensus 228 ~i~~~~~~~~~~~~~~---~~L~~Lls-~~~niryvaL~~l~~i~~~~p~ 273 (632)
...-+ ..+.. +.+..+++ +++++|=.|+.++..+-..-.+
T Consensus 197 ~~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 197 NAGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp HHCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 32222 12344 55666775 6888999999888877654333
No 102
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.31 E-value=6.7 Score=46.68 Aligned_cols=362 Identities=11% Similarity=0.139 Sum_probs=175.2
Q ss_pred HHHHHHHHhhhC-CCChHHHHHHHHHHHHhhhhcc-ccccccchHHHHH-HHhcCCChhHHHHHHHHHHHHHhcCC-CC-
Q 006763 80 EYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESLK-DLISDNNPMVVANAVAALAEIEENSS-RP- 154 (632)
Q Consensus 80 ~~l~~~v~~~L~-d~~pyVRK~A~~al~kl~~~~p-~~v~~~~~~~~L~-~lL~D~d~~Vv~~Al~aL~eI~~~~~-~~- 154 (632)
+.+...+.+++. ..++-+.+.+.-|+.+....-| +.+....+++.+. .+|. ++....+|+-.|++|..... ++
T Consensus 193 ~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~ 270 (1023)
T 4hat_C 193 EQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDN 270 (1023)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCch
Confidence 344444555554 3677788888998888877533 4444457888888 8885 56788899999999986432 22
Q ss_pred -chh-ccHHHHHHHHHHh-hc----cChhhHHHHHHHHhccccCCHHH-HHHHHHHH-------HHhhcCC-C-HHHHHH
Q 006763 155 -IFE-ITSHTLSKLLTAL-NE----CTEWGQVFILDALSRYKAADARE-AENIVERV-------TPRLQHA-N-CAVVLS 217 (632)
Q Consensus 155 -~~~-l~~~~~~~Ll~~l-~~----~~ew~qi~lL~lL~~y~~~~~~~-~~~il~~v-------~~~L~~~-n-~aVv~e 217 (632)
.++ .....+...+..+ .. ...+. ..+.. ...++.+ .+.+...+ ..++... + ..++..
T Consensus 271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~-----~~~~~-~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~ 344 (1023)
T 4hat_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLK-----ATYAN-ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLN 344 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTCCHH-----HHHHH-TCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchHH-----HHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHH
Confidence 121 1111222222221 10 00010 00111 1111111 11111111 1122221 1 344455
Q ss_pred HHHHHHHhhhccCChHHHHHHH---HhcccchhhhccC---chhHHHHHHHHHH-HHHh--hCccc---hhcccc-eeE-
Q 006763 218 AVKMILQQMELITSTDVVRNLC---KKMAPPLVTLLSA---EPEIQYVALRNIN-LIVQ--RRPTI---LAHEIK-VFF- 283 (632)
Q Consensus 218 aik~i~~~~~~i~~~~~~~~~~---~~~~~~L~~Lls~---~~niryvaL~~l~-~i~~--~~p~~---~~~~~~-~f~- 283 (632)
+...++.+.. +++.+..+... ..+.. .+.+. ..-.+= ++..+. .++. .+|.- +.++.. .+.
T Consensus 345 ~l~~Ll~~~~-~~d~ei~~~tl~FW~~L~~---~l~~e~~~~~~~~~-~~~~L~~vli~km~~P~e~~ive~d~~~~~~e 419 (1023)
T 4hat_C 345 AHQYLIQLSK-IEERELFKTTLDYWHNLVA---DLFYEPLKKHIYEE-ICSQLRLVIIENMVRPEEVLVVENDEGEIVRE 419 (1023)
T ss_dssp HHHHHHHHTT-SSCHHHHHHHHHHHHHHHH---HHTTSTTTGGGGHH-HHHHHHHHHHHSCCCCTTCCEEECTTSCEEEC
T ss_pred HHHHHHHhhC-CCcHHHHHHHHHHHHHHHH---HHHhchHHHHHHHH-HHHHHHHHHHHhcCCCcccccCCCCCccHHHH
Confidence 5556665543 33443322110 01111 01111 111111 222222 2232 24541 122221 111
Q ss_pred -eccCCc--h--hHHHHHHHHHHHhcCcccHHHHHHHHHHhhhh--cCHHHHHHHHHHHHHHHHhhhhh-----HHHHHH
Q 006763 284 -CKYNDP--I--YVKMEKLEIMIKLASDRNIDQVLLEFKEYATE--VDVDFVRKAVRAIGRCAIKLERA-----AERCIS 351 (632)
Q Consensus 284 -~l~~dd--~--~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~--~d~~~~~~~i~aIg~la~k~~~~-----~~~~v~ 351 (632)
....|+ . ..| ..|..++.+...+-+..+++.|.+.+.. .+=..+..++.++|.++....+. ....+.
T Consensus 420 ~~~d~d~~~~f~~~R-d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~ 498 (1023)
T 4hat_C 420 FVKESDTIQLYKSER-EVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIK 498 (1023)
T ss_dssp SSCCGGGHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHH-HHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 111222 1 223 5555566665665556666777666653 45667788899999998765432 224566
Q ss_pred HHHHHHhhh-----chhhHHHHHHH---HHHHHhhCcccHHHHHHHHHHhhccCChhhHHHHHHHHHhcccCccC-----
Q 006763 352 VLLELIKIK-----VNYVVQEAIIV---IKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID----- 418 (632)
Q Consensus 352 ~Ll~ll~~~-----~~~v~~e~i~~---l~~ilr~~p~~~~~ii~~L~~~l~~i~~p~a~~~~iWiLGEy~~~i~----- 418 (632)
.|+++...+ ...+.+.+..+ ..+.+..+|+..+.++..|++.+.+ ..|.+..+++|.+-..++.+.
T Consensus 499 ~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~-~~~~v~~~A~~al~~l~~~c~~~l~~ 577 (1023)
T 4hat_C 499 DLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE-THEGVQDMACDTFIKIVQKCKYHFVI 577 (1023)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHTHHHHS
T ss_pred HHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666666531 11222222222 2334455666667777777776633 245666677777655544321
Q ss_pred --------CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC
Q 006763 419 --------NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE 456 (632)
Q Consensus 419 --------~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e 456 (632)
....+++.+...+..-++.-+..+..|++.+....|.+
T Consensus 578 ~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~ 623 (1023)
T 4hat_C 578 QQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1023)
T ss_dssp CCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred cCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCH
Confidence 12445544444444456666778888888887777653
No 103
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.53 E-value=0.32 Score=48.60 Aligned_cols=129 Identities=10% Similarity=0.012 Sum_probs=90.6
Q ss_pred CCCcchHHHHHHHHHHhc----C----CCCcHHHHHHHHHHhhcCCCChHHHhHHHHH---hcCCCchhhHHHHHHHHHh
Q 006763 20 TENLELKKLVYLYLINYA----K----SQPDLAILAVNTFVKDSQDPNPLIRALAVRT---MGCIRVDKITEYLCDPLQR 88 (632)
Q Consensus 20 s~d~~~Krl~YLyl~~~~----~----~~~el~lL~iNtl~kDl~~~np~ir~lALr~---L~~I~~~ei~~~l~~~v~~ 88 (632)
++|..+=.-|.-++..+. + ..+..+-..+..+.-=+-|+++-+|..+-.. |+.+..+. .+.+.+.+
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~---~v~~~l~~ 174 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL---KMTPMLLD 174 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH---HHHHHHHH
Confidence 456555444544444442 2 2222345566777777888888888776544 44433332 35566788
Q ss_pred hhCCCChHHHHHHHHHHHHhhhhccccccccchH---HHHHHHhcCCChhHHHHHHHHHHHHHhcCCC
Q 006763 89 CLKDDDPYVRKTAAICVAKLYDINAELVEDRGFL---ESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (632)
Q Consensus 89 ~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~---~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~ 153 (632)
++.|+|+.+|--.+.++..++..+.-. . ...+ +.+.+++.|+|..|..+|+.++.++...-+.
T Consensus 175 g~ksKN~R~R~e~l~~l~~li~~~G~~-~-~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 175 ALKSKNARQRSECLLVIEYYITNAGIS-P-LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHCSG-G-GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHccCCHHHHHHHHHHHHHHHHhcCCC-c-cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999988765332 2 2466 8899999999999999999999998766554
No 104
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.43 E-value=0.071 Score=52.74 Aligned_cols=183 Identities=20% Similarity=0.178 Sum_probs=113.5
Q ss_pred cCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCCh
Q 006763 55 SQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNP 134 (632)
Q Consensus 55 l~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~ 134 (632)
+.|+++.+|..|.+.+. ++ .+.+++.|+++.||..|+..+ .+ +.+..+++|.|+
T Consensus 59 l~d~~~~VR~~AA~~l~----~~-------~l~~L~~D~~~~VR~~aA~~L------~~---------~~L~~ll~D~d~ 112 (244)
T 1lrv_A 59 LADPFWERRAIAVRYSP----VE-------ALTPLIRDSDEVVRRAVAYRL------PR---------EQLSALMFDEDR 112 (244)
T ss_dssp TTCSSHHHHHHHHTTSC----GG-------GGGGGTTCSSHHHHHHHHTTS------CS---------GGGGGTTTCSCH
T ss_pred hcCCCHHHHHHHHHhCC----HH-------HHHHHccCcCHHHHHHHHHHC------CH---------HHHHHHHcCCCH
Confidence 48999999999999763 22 378889999999999999642 11 346778999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcCCCHHH
Q 006763 135 MVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAV 214 (632)
Q Consensus 135 ~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~~n~aV 214 (632)
.|...+...+ +.. . |...+.+.+++.+..+.+-+ .+ +.+..+++..++.|
T Consensus 113 ~VR~~aA~~l-------~~~-------~---L~~L~~D~d~~VR~~aA~~l---~~----------~~l~~l~~D~d~~V 162 (244)
T 1lrv_A 113 EVRITVADRL-------PLE-------Q---LEQMAADRDYLVRAYVVQRI---PP----------GRLFRFMRDEDRQV 162 (244)
T ss_dssp HHHHHHHHHS-------CTG-------G---GGGGTTCSSHHHHHHHHHHS---CG----------GGGGGTTTCSCHHH
T ss_pred HHHHHHHHhC-------CHH-------H---HHHHHcCCCHHHHHHHHHhc---CH----------HHHHHHHcCCCHHH
Confidence 9998876643 111 1 11224566777666665522 11 13335667788888
Q ss_pred HHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHH
Q 006763 215 VLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVK 293 (632)
Q Consensus 215 v~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik 293 (632)
..+++.. + .+ ..+..++. .++++|..+..++ -+..+. ..+.+++..||
T Consensus 163 R~~aa~~---l-----~~-----------~ll~~ll~D~d~~VR~aaa~~l------~~~~L~------~Ll~D~d~~VR 211 (244)
T 1lrv_A 163 RKLVAKR---L-----PE-----------ESLGLMTQDPEPEVRRIVASRL------RGDDLL------ELLHDPDWTVR 211 (244)
T ss_dssp HHHHHHH---S-----CG-----------GGGGGSTTCSSHHHHHHHHHHC------CGGGGG------GGGGCSSHHHH
T ss_pred HHHHHHc---C-----CH-----------HHHHHHHcCCCHHHHHHHHHhC------CHHHHH------HHHcCCCHHHH
Confidence 8887764 1 11 12234554 5788888888763 112211 12456678888
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 006763 294 MEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIG 336 (632)
Q Consensus 294 ~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg 336 (632)
..+.+-+- . +++..+.+.+..++..+..++|
T Consensus 212 ~~aa~~l~-----------~-~~L~~L~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 212 LAAVEHAS-----------L-EALRELDEPDPEVRLAIAGRLG 242 (244)
T ss_dssp HHHHHHSC-----------H-HHHHHCCCCCHHHHHHHHCCC-
T ss_pred HHHHHcCC-----------H-HHHHHccCCCHHHHHHHHHHhC
Confidence 87776532 1 2333346677777766665544
No 105
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=93.70 E-value=4 Score=39.72 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHhc--CcccHHHH-----HHHHHHhhhhcCHHHHHHHHHHHHHHHH
Q 006763 291 YVKMEKLEIMIKLA--SDRNIDQV-----LLEFKEYATEVDVDFVRKAVRAIGRCAI 340 (632)
Q Consensus 291 ~Ik~~kL~lL~~L~--n~~Ni~~I-----v~EL~~yl~~~d~~~~~~~i~aIg~la~ 340 (632)
.++..+...|..++ ++.|...| ++.|.+.+...+.++++.++.++..++.
T Consensus 25 ~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 44555555555544 22233332 3344455555555555555555555554
No 106
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=93.60 E-value=0.19 Score=49.36 Aligned_cols=105 Identities=10% Similarity=0.007 Sum_probs=78.0
Q ss_pred HHHHHHHhhcCCCCh--HHHhHHHHHhcCCC--ch----hhHH-HHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcc---
Q 006763 46 LAVNTFVKDSQDPNP--LIRALAVRTMGCIR--VD----KITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA--- 113 (632)
Q Consensus 46 L~iNtl~kDl~~~np--~ir~lALr~L~~I~--~~----ei~~-~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p--- 113 (632)
|.+..+.+-|.++++ .++..|..++.++. .+ .+++ -.+|++.++|.+.++.||+.|+-++..+-..++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 445667777777777 67666666665553 22 2222 246899999999999999999999999876544
Q ss_pred ccccccchHHHHHHHhc-CCChhHHHHHHHHHHHHHhc
Q 006763 114 ELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEEN 150 (632)
Q Consensus 114 ~~v~~~~~~~~L~~lL~-D~d~~Vv~~Al~aL~eI~~~ 150 (632)
..+.+.+-++.|.++|. ..+..+.-+|+.+|..+...
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 34445688899999997 57899999999999888643
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=92.90 E-value=0.34 Score=47.27 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=86.6
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHh-hcCCCChHHHhHHHHHhcCCC---chhhHHHHH
Q 006763 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVK-DSQDPNPLIRALAVRTMGCIR---VDKITEYLC 83 (632)
Q Consensus 8 s~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~k-Dl~~~np~ir~lALr~L~~I~---~~ei~~~l~ 83 (632)
...+.-+-.+.+++..+.|-++--.+... ...++ +...+++ =..|++--||=.+-..++.+. .++ .+.
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~~----~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---~~l 141 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDKE----ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---KAL 141 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSHH----HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---TTH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcHH----HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---HHH
Confidence 34444455567777777766554444444 32222 3344444 345677766655444444433 233 144
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHhhhhccccccc-cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCC
Q 006763 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED-RGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (632)
Q Consensus 84 ~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~-~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~ 153 (632)
+.+.+-+.|.++.|||.|+.++...... |....+ ..+++.|..+..|++--|.-+.-..|.++.+.+|.
T Consensus 142 ~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 142 PIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 5678899999999999999997432111 222111 23568999999999999999889999999998875
No 108
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=92.73 E-value=0.37 Score=52.67 Aligned_cols=230 Identities=14% Similarity=0.150 Sum_probs=134.1
Q ss_pred HhhcCCCcchHHHHHHHHHHhcCC-----------CCcHHHHHHHHHHh----hcCCCC--hHHHhHHHHHhcCC--Cch
Q 006763 16 NCMQTENLELKKLVYLYLINYAKS-----------QPDLAILAVNTFVK----DSQDPN--PLIRALAVRTMGCI--RVD 76 (632)
Q Consensus 16 ~l~~s~d~~~Krl~YLyl~~~~~~-----------~~el~lL~iNtl~k----Dl~~~n--p~ir~lALr~L~~I--~~~ 76 (632)
.-+-+++=+.|.=+-+++..+.+. |.|++.-.+=.|.- |.-+.. --||--|-.+||.+ ..+
T Consensus 181 ~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL~hLp~ 260 (800)
T 3oc3_A 181 DNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLIG 260 (800)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHHTTTSC
T ss_pred HHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHHHhCCh
Confidence 345567777888888888776543 33554433333322 444332 23454443433333 112
Q ss_pred hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcccccc-ccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCc
Q 006763 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE-DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (632)
Q Consensus 77 ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~-~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~ 155 (632)
+ .+. +..+.+.+....+-||--+.+++--+ .+.+. -.++++.+...|.|.|-.|.+.|..+|..+. .+ ..
T Consensus 261 e-~~I-L~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p-~~ 331 (800)
T 3oc3_A 261 P-NDI-IEQLVGFLDSGDWQVQFSGLIALGYL----KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--IT-DS 331 (800)
T ss_dssp S-CCH-HHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CS-ST
T ss_pred h-HHH-HHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--ch-hh
Confidence 2 222 22233456788999999999988766 23332 1246677788899999999999999998887 22 11
Q ss_pred hhccHHHHHHHHHHhhccChhhHHHHHHHHhcccc--CCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChH
Q 006763 156 FEITSHTLSKLLTALNECTEWGQVFILDALSRYKA--ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTD 233 (632)
Q Consensus 156 ~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~--~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~ 233 (632)
+..+...+...|..+.+.+. ....+|++|+.++. .+......++.++.|++.|+-++|..++++++..++ +..
T Consensus 332 l~~LL~iLWd~L~~LDDLSA-STgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----~~~ 406 (800)
T 3oc3_A 332 LDLVLEKCWKNIESEELISV-SKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----EES 406 (800)
T ss_dssp HHHHHHHHHHHHHTCCSCCT-THHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----CHH
T ss_pred HHHHHHHHHHHhhhhcccch-hhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----hhh
Confidence 22222222233333322222 23456677765431 110001166788889999999999999999987653 455
Q ss_pred HHHHHHHhcccchhhhccCchhHHHHHHHHHH
Q 006763 234 VVRNLCKKMAPPLVTLLSAEPEIQYVALRNIN 265 (632)
Q Consensus 234 ~~~~~~~~~~~~L~~Lls~~~niryvaL~~l~ 265 (632)
.++.+.+++ |+..+.+++-.+++.-.
T Consensus 407 ~LRLIFQNI------LLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 407 IDFLVAEVV------LIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHH------HHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HhCCcHHHHHHHHHHHH
Confidence 555443332 45677788777776553
No 109
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=92.33 E-value=0.69 Score=52.61 Aligned_cols=65 Identities=23% Similarity=0.245 Sum_probs=43.4
Q ss_pred HHhhhCCCChHHHHHHHHHHHHhhhhcccc----ccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcC
Q 006763 86 LQRCLKDDDPYVRKTAAICVAKLYDINAEL----VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (632)
Q Consensus 86 v~~~L~d~~pyVRK~A~~al~kl~~~~p~~----v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~ 151 (632)
+.+.|+++++-+|..|+.|+..+.. +|+. ..+..+...+..+|.|.+..|+.+|..+|..++...
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 3445778888888888888887774 5432 222223345677788888888888888887776554
No 110
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.32 E-value=0.24 Score=59.36 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=88.0
Q ss_pred CCcchHHHHHHHHHHhcC--------CCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhh---
Q 006763 21 ENLELKKLVYLYLINYAK--------SQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRC--- 89 (632)
Q Consensus 21 ~d~~~Krl~YLyl~~~~~--------~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~--- 89 (632)
++..+++.++|.++.+.+ ..++..--+.+.+.+-+...+..-+-++|++||+++.|+.++.+.+.+...
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~ 486 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKS 486 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSC
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHHHHHhhcCcccc
Confidence 455678888888877653 133545556666777777778888999999999999999887655543321
Q ss_pred hCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhc--CCChhHHHHHHHHHHHH
Q 006763 90 LKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS--DNNPMVVANAVAALAEI 147 (632)
Q Consensus 90 L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~--D~d~~Vv~~Al~aL~eI 147 (632)
-.+....||..|+.|+.++-...|+.+. +.+.+++. ..++.|..+|+..|.+-
T Consensus 487 ~~~~~~rvr~aAi~ALr~~~~~~p~~v~-----~il~~i~~n~~e~~EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 487 LDEYSTRVQAEAIMALRNIAKRDPRKVQ-----EIVLPIFLNVAIKSELRIRSCIVFFES 541 (1056)
T ss_dssp CCCSCHHHHHHHHHTTTTGGGTCHHHHH-----HHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHhhhhchHHHH-----HHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 1234567999999999999877777654 56677763 56789998888877653
No 111
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=92.29 E-value=25 Score=42.53 Aligned_cols=299 Identities=13% Similarity=0.097 Sum_probs=149.6
Q ss_pred ChHHHHHHHHHHHHhhhhcc-ccccc--cchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCC--C---chhcc-HHHHH
Q 006763 94 DPYVRKTAAICVAKLYDINA-ELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSR--P---IFEIT-SHTLS 164 (632)
Q Consensus 94 ~pyVRK~A~~al~kl~~~~p-~~v~~--~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~--~---~~~l~-~~~~~ 164 (632)
++-+++.|.-|+..+...-| ..+.. ..+++.+..++. ++.+...|+..|.+|...... . .+... ...+.
T Consensus 220 ~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~ 297 (1204)
T 3a6p_A 220 NCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMH 297 (1204)
T ss_dssp HHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHH
Confidence 34577777777776655434 22211 136677777776 456778899999999875431 1 12221 11123
Q ss_pred HHHHHhh--cc---Ch--h-hHHHHHHHHhccc------------cCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 006763 165 KLLTALN--EC---TE--W-GQVFILDALSRYK------------AADAREAENIVERVTPRLQHANCAVVLSAVKMILQ 224 (632)
Q Consensus 165 ~Ll~~l~--~~---~e--w-~qi~lL~lL~~y~------------~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~ 224 (632)
+++.... +. ++ . ....+-+++..++ .........+++.+..+++|.+..|...+...-..
T Consensus 298 ~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ 377 (1204)
T 3a6p_A 298 YILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGA 377 (1204)
T ss_dssp HHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHH
Confidence 4444321 10 11 0 0112222222221 01233456788888889999888888887766554
Q ss_pred hhhcc--CChHHHHHHHHhcccch---h-hhc--c---------------Cc-------hhHHHHHHHHHHHHHhhCccc
Q 006763 225 QMELI--TSTDVVRNLCKKMAPPL---V-TLL--S---------------AE-------PEIQYVALRNINLIVQRRPTI 274 (632)
Q Consensus 225 ~~~~i--~~~~~~~~~~~~~~~~L---~-~Ll--s---------------~~-------~niryvaL~~l~~i~~~~p~~ 274 (632)
++... ...+..+.++.++...+ + ++- . ++ .+.|.-....+..++...|..
T Consensus 378 ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~ 457 (1204)
T 3a6p_A 378 LFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKT 457 (1204)
T ss_dssp HHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 44321 11222222322332222 1 110 0 01 134444445555566556543
Q ss_pred hh----ccc----c----------ee--------EeccCCchhHHHHH----HHHHHHhc-----CcccHHHHHHHHHHh
Q 006763 275 LA----HEI----K----------VF--------FCKYNDPIYVKMEK----LEIMIKLA-----SDRNIDQVLLEFKEY 319 (632)
Q Consensus 275 ~~----~~~----~----------~f--------~~l~~dd~~Ik~~k----L~lL~~L~-----n~~Ni~~Iv~EL~~y 319 (632)
.- +++ . .| +|....+.+....+ ++-...-+ +++.-..++..|+..
T Consensus 458 ~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ 537 (1204)
T 3a6p_A 458 SFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQM 537 (1204)
T ss_dssp HHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 21 111 1 11 45444455555544 44333322 122211356666665
Q ss_pred hh---hcCHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHhh------------hchhhHHHHHHHHHHHHhhCcc
Q 006763 320 AT---EVDVDFVRKAVRAIGRCAIKLE---RAAERCISVLLELIKI------------KVNYVVQEAIIVIKDIFRRYPN 381 (632)
Q Consensus 320 l~---~~d~~~~~~~i~aIg~la~k~~---~~~~~~v~~Ll~ll~~------------~~~~v~~e~i~~l~~ilr~~p~ 381 (632)
+- ..++.++...+..+|.+..-+. ......++.++..+.. ....+...+...++.+.+.+|+
T Consensus 538 ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~ 617 (1204)
T 3a6p_A 538 VLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQ 617 (1204)
T ss_dssp HHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhH
Confidence 42 3477888888888888776543 3344555555555544 2235666777788888888764
Q ss_pred c----HHHHHHHHHHhh
Q 006763 382 T----YESIIATLCESL 394 (632)
Q Consensus 382 ~----~~~ii~~L~~~l 394 (632)
. .+.+...+...+
T Consensus 618 ~L~p~~~~i~~~~~~~l 634 (1204)
T 3a6p_A 618 LVLPNFDMLYNHVKQLL 634 (1204)
T ss_dssp HHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3 344444444434
No 112
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.35 E-value=4 Score=42.84 Aligned_cols=112 Identities=16% Similarity=0.206 Sum_probs=74.5
Q ss_pred cCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCC--CchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhh---
Q 006763 37 AKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI--RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI--- 111 (632)
Q Consensus 37 ~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I--~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~--- 111 (632)
.+.+|++.--....+..=..+++..+|.....++... ...+++..+++.+..++.|.++.|-|+|+.|...+|+.
T Consensus 54 l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~ 133 (386)
T 3o2t_A 54 INKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQ 133 (386)
T ss_dssp HTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4556653322223333333456777777666666544 34688889999999999999999999999999999864
Q ss_pred ----cccc---ccc-----cchHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 006763 112 ----NAEL---VED-----RGFLESLKDLISDNNPMVVANAVAALAEIE 148 (632)
Q Consensus 112 ----~p~~---v~~-----~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~ 148 (632)
+|.. .+. ..+.+.+..++...|.+|..+|+..+..+.
T Consensus 134 ~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 134 WMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 3321 111 122344555777788999999998887754
No 113
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=88.36 E-value=5.7 Score=40.68 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=57.2
Q ss_pred hhhCCCChHHHHHHHHHHHHhhhhccccccccchH-----HHHHHHhcCCChhHHHHHHHHHHHHHhcCCC-CchhccHH
Q 006763 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFL-----ESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEITSH 161 (632)
Q Consensus 88 ~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~-----~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~-~~~~l~~~ 161 (632)
+.|.+.+.-.+|.|...+.+++..+++.+.+ |+ ..|.+...+.+...++-++.+|.++..+.-+ +.+.-...
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~E--FI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVPE--FVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTCTTHHHH--HHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcchHHHHH--HHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 4444677888999999999999988888764 54 4566677788999999999999999765211 00111234
Q ss_pred HHHHHHHHhh
Q 006763 162 TLSKLLTALN 171 (632)
Q Consensus 162 ~~~~Ll~~l~ 171 (632)
.++++...+.
T Consensus 203 fI~~lyslv~ 212 (339)
T 3dad_A 203 TIQWLYTLCA 212 (339)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHHHHc
Confidence 4566666555
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=88.24 E-value=8.3 Score=38.08 Aligned_cols=100 Identities=14% Similarity=0.227 Sum_probs=74.3
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCC-----------Cc---
Q 006763 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI-----------RV--- 75 (632)
Q Consensus 10 lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I-----------~~--- 75 (632)
++.+++.+...++.++||.+==|+......+++++.-++.++..=+++.++.+.--|+.+++++ +.
T Consensus 54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~ 133 (257)
T 3gs3_A 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGD 133 (257)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCH
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 3555555666788999999999998888999999999999998888888988876666665553 22
Q ss_pred --h---hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhh
Q 006763 76 --D---KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLY 109 (632)
Q Consensus 76 --~---ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~ 109 (632)
. +....+-..|.+...+.+.-||=.|+--+-++.
T Consensus 134 ~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 134 SAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 2 333355567777778889999977766555544
No 115
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=85.47 E-value=1.4 Score=49.98 Aligned_cols=146 Identities=14% Similarity=0.099 Sum_probs=81.8
Q ss_pred HHhhcCCCChHHHhHHHHHhcCCCc-hhhHH-----HHH-HHHHhhhCCCChHHHHHHHHHHHHhhhh-cccccc---cc
Q 006763 51 FVKDSQDPNPLIRALAVRTMGCIRV-DKITE-----YLC-DPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVE---DR 119 (632)
Q Consensus 51 l~kDl~~~np~ir~lALr~L~~I~~-~ei~~-----~l~-~~v~~~L~d~~pyVRK~A~~al~kl~~~-~p~~v~---~~ 119 (632)
+.+.|+|+++-.|..|+.++++|.. +++.. .++ +.|.++|.|++.-||..|+-++..+... .++.+. ..
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~ 118 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRL 118 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHc
Confidence 4456999999999999999999864 23222 233 4467889999999999999888776543 233222 11
Q ss_pred chHHHHHHHhcCC-------C--------------hhHHHHHHHHHHHHHhcCCCCchhc-cHHHHHHHHHHhhc---cC
Q 006763 120 GFLESLKDLISDN-------N--------------PMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNE---CT 174 (632)
Q Consensus 120 ~~~~~L~~lL~D~-------d--------------~~Vv~~Al~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~l~~---~~ 174 (632)
+.+..|..+|... . +.+.-+++.+|..++..+....-.+ ....+..|+..+.. ..
T Consensus 119 ~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~ 198 (684)
T 4gmo_A 119 DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAP 198 (684)
T ss_dssp THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSC
T ss_pred ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCc
Confidence 3334444433210 0 1233456666666665442111001 11234444444432 22
Q ss_pred hhhHHHHHHHHhccccCCHHHH
Q 006763 175 EWGQVFILDALSRYKAADAREA 196 (632)
Q Consensus 175 ew~qi~lL~lL~~y~~~~~~~~ 196 (632)
.=.+...+++|..+...+.+..
T Consensus 199 ~~v~~~a~~~L~~ls~dn~~~~ 220 (684)
T 4gmo_A 199 QDIYEEAISCLTTLSEDNLKVG 220 (684)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHH
Confidence 3356677777777766655433
No 116
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=85.29 E-value=18 Score=43.21 Aligned_cols=164 Identities=14% Similarity=0.159 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhhhh----cCHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 006763 309 IDQVLLEFKEYATE----VDVDFVRKAVRAIGRCAIKLER--------AAERCISVLLELIKIKVNYVVQEAIIVIKDIF 376 (632)
Q Consensus 309 i~~Iv~EL~~yl~~----~d~~~~~~~i~aIg~la~k~~~--------~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~il 376 (632)
-.++++++.+.+.. .+..++..++-++|.++.++-. ...++.+.+.+.+..+...-..-.+.+|.++
T Consensus 389 t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~- 467 (1056)
T 1lsh_A 389 TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA- 467 (1056)
T ss_dssp CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc-
Confidence 35566666666643 4567778888999999988732 2345566666555544322222223344444
Q ss_pred hhCcccHHHHHHHHHHhhccC-----C-hhhHHHHHHHHHhcccCccCCHHHHHHHHhhhC--CCCCHHHHHHHHHHHHH
Q 006763 377 RRYPNTYESIIATLCESLDTL-----D-EPEAKASMIWIIGEYAERIDNADELLESFLESF--PEEPAQVQLQLLTATVK 448 (632)
Q Consensus 377 r~~p~~~~~ii~~L~~~l~~i-----~-~p~a~~~~iWiLGEy~~~i~~~~~~l~~l~~~f--~~e~~~vq~~iLta~~K 448 (632)
..|+ ++..|..++... . ...++.+++|.+..+... .+..+-+.++.-| ..+++++|.+.+..+++
T Consensus 468 -g~p~----~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~--~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 468 -GQPN----SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR--DPRKVQEIVLPIFLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp -TCGG----GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT--CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred -CChh----HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh--chHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 2454 355555555422 1 234567889999888753 4556666677777 67899999766655543
Q ss_pred HhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHh
Q 006763 449 LFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (632)
Q Consensus 449 l~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL 489 (632)
..|+ ..+++.+.+. +....|..| +++.|..|-
T Consensus 541 ---t~P~---~~~l~~ia~~-l~~E~~~QV--~sfv~S~l~ 572 (1056)
T 1lsh_A 541 ---SKPS---VALVSMVAVR-LRREPNLQV--ASFVYSQMR 572 (1056)
T ss_dssp ---TCCC---HHHHHHHHHH-HTTCSCHHH--HHHHHHHHH
T ss_pred ---HCcC---HHHHHHHHHH-HhhCchHHH--HHHHHHHHH
Confidence 2464 4577777765 333455555 556555543
No 117
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=82.49 E-value=29 Score=35.51 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCC-------------hHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhc
Q 006763 433 EEPAQVQLQLLTATVKLFLKKPTEG-------------PQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (632)
Q Consensus 433 ~e~~~vq~~iLta~~Kl~~~~p~e~-------------~~~~v~~ll~~~~~~s~~~dvrdRA~~y~~LL~ 490 (632)
..+.++|...+|.+-|++...|+++ ++..+++.++. ...++|++..-..|-+.+.
T Consensus 268 ~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~---~~~~~~l~~Ql~iyE~~~~ 335 (339)
T 3dad_A 268 GADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT---AGTDVDLRTQLVLYENALK 335 (339)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC---TTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhh
Confidence 5688999999999999999988632 33344444432 2247899998888888765
No 118
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=79.70 E-value=2.5 Score=41.56 Aligned_cols=90 Identities=18% Similarity=0.256 Sum_probs=58.0
Q ss_pred HhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCCh
Q 006763 16 NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDP 95 (632)
Q Consensus 16 ~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~p 95 (632)
.++..++..+|+.+-- .. ....+..=++|+++.||..|.+.++ + +.+..++.|+++
T Consensus 129 ~L~~D~d~~VR~~aA~---~l----------~~~~l~~l~~D~d~~VR~~aa~~l~----~-------~ll~~ll~D~d~ 184 (244)
T 1lrv_A 129 QMAADRDYLVRAYVVQ---RI----------PPGRLFRFMRDEDRQVRKLVAKRLP----E-------ESLGLMTQDPEP 184 (244)
T ss_dssp GGTTCSSHHHHHHHHH---HS----------CGGGGGGTTTCSCHHHHHHHHHHSC----G-------GGGGGSTTCSSH
T ss_pred HHHcCCCHHHHHHHHH---hc----------CHHHHHHHHcCCCHHHHHHHHHcCC----H-------HHHHHHHcCCCH
Confidence 4556677777776533 21 1234555567889999998888743 1 235577788999
Q ss_pred HHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHH
Q 006763 96 YVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAAL 144 (632)
Q Consensus 96 yVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL 144 (632)
.||+.|+..+ .+ +.|..++.|.++.|..++...+
T Consensus 185 ~VR~aaa~~l------~~---------~~L~~Ll~D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 185 EVRRIVASRL------RG---------DDLLELLHDPDWTVRLAAVEHA 218 (244)
T ss_dssp HHHHHHHHHC------CG---------GGGGGGGGCSSHHHHHHHHHHS
T ss_pred HHHHHHHHhC------CH---------HHHHHHHcCCCHHHHHHHHHcC
Confidence 9998888652 11 3355667777777776665554
No 119
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=78.79 E-value=19 Score=31.93 Aligned_cols=86 Identities=8% Similarity=0.067 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCC---CchhhH-----HHHHHHHHhhhCCCCh
Q 006763 24 ELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI---RVDKIT-----EYLCDPLQRCLKDDDP 95 (632)
Q Consensus 24 ~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I---~~~ei~-----~~l~~~v~~~L~d~~p 95 (632)
+.---+.+-++-....+++-.--++-.|+|=++++||.+.-+||..|-.+ +.+.+- ..+...+.+.+...++
T Consensus 20 ~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~ 99 (140)
T 3ldz_A 20 AEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHP 99 (140)
T ss_dssp SCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCH
T ss_pred CcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCH
Confidence 33334555667777788888889999999999999999888888766443 111111 2333444555555778
Q ss_pred HHHHHHHHHHHHhh
Q 006763 96 YVRKTAAICVAKLY 109 (632)
Q Consensus 96 yVRK~A~~al~kl~ 109 (632)
-||++....+....
T Consensus 100 ~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 100 KVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777665544
No 120
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=78.37 E-value=3.7 Score=39.97 Aligned_cols=72 Identities=8% Similarity=0.055 Sum_probs=53.0
Q ss_pred cCCCChHHHhHHHH----HhcCCC----chhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHH
Q 006763 55 SQDPNPLIRALAVR----TMGCIR----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (632)
Q Consensus 55 l~~~np~ir~lALr----~L~~I~----~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~ 126 (632)
+.|+|+..|-.|+- .++... ...-.+.+...+...+.|.+.||||...-++..+...+|+.+.. +++...
T Consensus 117 ~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~--al~~~~ 194 (235)
T 1t06_A 117 IASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEK--AVEIAK 194 (235)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHH--HHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHH--HHHHHH
Confidence 45788888888887 555543 23556677777888888899999999988888888888887763 555444
Q ss_pred HH
Q 006763 127 DL 128 (632)
Q Consensus 127 ~l 128 (632)
.+
T Consensus 195 ~l 196 (235)
T 1t06_A 195 EV 196 (235)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 121
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=77.86 E-value=16 Score=33.31 Aligned_cols=98 Identities=12% Similarity=0.136 Sum_probs=61.5
Q ss_pred HHHH-hhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC---ch----hhH-HHHH
Q 006763 13 DVVN-CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD----KIT-EYLC 83 (632)
Q Consensus 13 ~vi~-l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~---~~----ei~-~~l~ 83 (632)
..|. +....+.+.---..+-++-..+.+++-..-++-+|+|=++++||.++-+||..|-.+. .+ +++ ..+.
T Consensus 18 ~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl 97 (163)
T 1x5b_A 18 QDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFA 97 (163)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHH
Confidence 4443 4443333444444556666667777888889999999999999999988988764321 11 111 2333
Q ss_pred HHHHhhhCC-CChHHHHHHHHHHHHhhh
Q 006763 84 DPLQRCLKD-DDPYVRKTAAICVAKLYD 110 (632)
Q Consensus 84 ~~v~~~L~d-~~pyVRK~A~~al~kl~~ 110 (632)
..+.+.+.. .++-||+++...+.....
T Consensus 98 ~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 98 TEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 444455544 678888888776655443
No 122
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=77.25 E-value=18 Score=34.82 Aligned_cols=99 Identities=19% Similarity=0.159 Sum_probs=64.2
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCC------------Cc
Q 006763 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI------------RV 75 (632)
Q Consensus 8 s~lf~~vi~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I------------~~ 75 (632)
+.+--.|-++....+.+.---.-+.+.-....+++-+.-++.+|+|=++++||.+.-+||..|-.+ ..
T Consensus 7 ~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias 86 (226)
T 3zyq_A 7 GTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVAN 86 (226)
T ss_dssp CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSS
T ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhcc
Confidence 333333444544444444444556677777777788889999999999999999999999876543 34
Q ss_pred hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhh
Q 006763 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLY 109 (632)
Q Consensus 76 ~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~ 109 (632)
.++.+.+...+. ...++-||+++..-+....
T Consensus 87 ~~fl~~l~~l~~---~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 87 KQTMEELKDLLK---RQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHH
Confidence 444444433332 2366788888776555443
No 123
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=75.24 E-value=4 Score=39.23 Aligned_cols=135 Identities=9% Similarity=0.031 Sum_probs=85.3
Q ss_pred HHHhhcCCCcchHHHHHHHHHHhcCC-CCcHHHHHHHHHHhhcCCCC-hHHHhHHHHHhcCCC--chhhHHHHHHHHHhh
Q 006763 14 VVNCMQTENLELKKLVYLYLINYAKS-QPDLAILAVNTFVKDSQDPN-PLIRALAVRTMGCIR--VDKITEYLCDPLQRC 89 (632)
Q Consensus 14 vi~l~~s~d~~~Krl~YLyl~~~~~~-~~el~lL~iNtl~kDl~~~n-p~ir~lALr~L~~I~--~~ei~~~l~~~v~~~ 89 (632)
+-.+.+++.++.+-++-+++....+. .++ .+-.+..+.... .| ..+=++| ++++.+. .++ .+.+.+.+-
T Consensus 60 ~~~L~~s~~~E~r~la~~~l~~~~~~~~~~-~l~~~~~~l~~~--~nWd~~D~~a-~~~~~~~~~~~~---~~~~~i~~W 132 (220)
T 2b6c_A 60 IEAYYQKTEREYQYVAIDLALQNVQRFSLE-EVVAFKAYVPQK--AWWDSVDAWR-KFFGSWVALHLT---ELPTIFALF 132 (220)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHTGGGCCHH-HHHHGGGGTTTT--CSHHHHHHHH-HHHHHHHHHSGG---GHHHHHHHH
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHhhCCHH-HHHHHHHHhccC--CcHHHHHHHH-HHHHHHHHHChH---HHHHHHHHH
Confidence 34577888888888888888766534 333 333344444332 23 2333344 4343331 222 234458889
Q ss_pred hCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhcc
Q 006763 90 LKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEIT 159 (632)
Q Consensus 90 L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~ 159 (632)
+.|.+.++||.|+.+.+...+ -+... ...+.+..++.|.+--|.-+.--+|.++.+.++.....++
T Consensus 133 ~~s~~~w~rR~ai~~~l~~~~--~~~~~--~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 133 YGAENFWNRRVALNLQLMLKE--KTNQD--LLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp TTCSSHHHHHHHHHTTTTCGG--GCCHH--HHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHH--CCCHH--HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 999999999999998764322 22222 3567778899999999988888888999888876554444
No 124
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=74.52 E-value=14 Score=35.31 Aligned_cols=82 Identities=4% Similarity=-0.184 Sum_probs=39.6
Q ss_pred CCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChh
Q 006763 57 DPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPM 135 (632)
Q Consensus 57 ~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d-~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~ 135 (632)
++..-.|-+|+-.++.... .+.+.-.+.+...+.+ .+.-+-=.-+.++.+++..+|+.+ .+.+.....+.|.-
T Consensus 66 s~~~E~r~la~~~l~~~~~-~~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~~-----~~~i~~W~~s~~~w 139 (220)
T 2b6c_A 66 KTEREYQYVAIDLALQNVQ-RFSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTEL-----PTIFALFYGAENFW 139 (220)
T ss_dssp SSSHHHHHHHHHHHHHTGG-GCCHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGGH-----HHHHHHHTTCSSHH
T ss_pred CchhHHHHHHHHHHHHHHh-hCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHcCCCHH
Confidence 3444555555555554321 1112223334444433 333333333345666666666532 35566667777777
Q ss_pred HHHHHHHHH
Q 006763 136 VVANAVAAL 144 (632)
Q Consensus 136 Vv~~Al~aL 144 (632)
+...|+..+
T Consensus 140 ~rR~ai~~~ 148 (220)
T 2b6c_A 140 NRRVALNLQ 148 (220)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 766665544
No 125
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=73.02 E-value=4 Score=39.58 Aligned_cols=137 Identities=11% Similarity=0.118 Sum_probs=82.6
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHhcCC-CCcHHHHHHHHHHhhcCCCCh-HHHhHHHHHhcCCC--chhhHHHHHHHHHh
Q 006763 13 DVVNCMQTENLELKKLVYLYLINYAKS-QPDLAILAVNTFVKDSQDPNP-LIRALAVRTMGCIR--VDKITEYLCDPLQR 88 (632)
Q Consensus 13 ~vi~l~~s~d~~~Krl~YLyl~~~~~~-~~el~lL~iNtl~kDl~~~np-~ir~lALr~L~~I~--~~ei~~~l~~~v~~ 88 (632)
.+-.+.++...+.+-++-.++..+.+. .++. +-.+..+... -.|- .+-++|-+.++.+. .|+ .+.+.+.+
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~-l~~~~~~l~~--~~nWd~~D~~a~~~~g~~~~~~p~---~~~~~l~~ 138 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINETH-IPFLEELIVT--KSWWDSVDSIVPTFLGDIFLKHPE---LISAYIPK 138 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGG-HHHHHHHHTS--SCCHHHHHHHTTTHHHHHHHHCGG---GGGGTHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHcc--CCChHHHHHhhHHHHHHHHHHCHH---HHHHHHHH
Confidence 445577888788777777777654332 3332 1123344432 2342 22344433333321 233 12344788
Q ss_pred hhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhcc
Q 006763 89 CLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEIT 159 (632)
Q Consensus 89 ~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~ 159 (632)
-+.|.++++||.|+.+....+. ..+ .. .+...+..++.|.+.-|.-+.--+|.++.+.++.....++
T Consensus 139 W~~s~~~w~rR~ai~~~l~~~~-~~d-~~--~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl 205 (232)
T 3jxy_A 139 WIASDNIWLQRAAILFQLKYKQ-KMD-EE--LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYV 205 (232)
T ss_dssp HHHSSCHHHHHHHHHTTTTCGG-GCC-HH--HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHh-CCC-HH--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 8899999999999988765432 222 11 3567788889999999988888888899888765544443
No 126
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=71.55 E-value=3.7 Score=48.67 Aligned_cols=98 Identities=9% Similarity=0.046 Sum_probs=69.7
Q ss_pred HHHhhcCCCc-chHHH-HHHHHHHhcCC--CCcHHHHHHHHHHhhcC-CCChHHHhHHHHHh--------cCCCchhhHH
Q 006763 14 VVNCMQTENL-ELKKL-VYLYLINYAKS--QPDLAILAVNTFVKDSQ-DPNPLIRALAVRTM--------GCIRVDKITE 80 (632)
Q Consensus 14 vi~l~~s~d~-~~Krl-~YLyl~~~~~~--~~el~lL~iNtl~kDl~-~~np~ir~lALr~L--------~~I~~~ei~~ 80 (632)
+..+...+|- ++.++ ++..+..++.. .++.+-.+++++.+-.+ +++- .|..+|..+ -.+.. +-.+
T Consensus 765 ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~-~~~~ 842 (997)
T 1vsy_5 765 LIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTE-EEKN 842 (997)
T ss_dssp TCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCT-THHH
T ss_pred HHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCH-HHHH
Confidence 3334444554 67777 66666665433 45566678888877676 5677 888888884 33333 3336
Q ss_pred HHHHHHHhhhCCCC-hHHHHHHHHHHHHhhhhc-c
Q 006763 81 YLCDPLQRCLKDDD-PYVRKTAAICVAKLYDIN-A 113 (632)
Q Consensus 81 ~l~~~v~~~L~d~~-pyVRK~A~~al~kl~~~~-p 113 (632)
.+...|.++|.|+. .-||..|+.++.-+.+-. +
T Consensus 843 ~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~ 877 (997)
T 1vsy_5 843 KILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKE 877 (997)
T ss_dssp HTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc
Confidence 77888999999999 999999999998887665 5
No 127
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=71.40 E-value=19 Score=39.57 Aligned_cols=127 Identities=13% Similarity=0.143 Sum_probs=55.4
Q ss_pred cCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCCCC-hHH
Q 006763 19 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDD-PYV 97 (632)
Q Consensus 19 ~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~-pyV 97 (632)
..+.-+.+.=|-|.+.-+.+.-.+ .--+++.+.+-|+|++..||+.|-.+|.-+..++-++.+...+=.+|.+-+ --.
T Consensus 273 ~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDDLSA 351 (800)
T 3oc3_A 273 DSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELISV 351 (800)
T ss_dssp GCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCSCCT
T ss_pred CCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcccch
Confidence 344445555455544433111111 233455555555555555555555555555444444444444444443210 001
Q ss_pred HHHHHHH-HHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHH
Q 006763 98 RKTAAIC-VAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAE 146 (632)
Q Consensus 98 RK~A~~a-l~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~e 146 (632)
-...+|- +.+++...++...++.+++.|...|...-++|..+++.++..
T Consensus 352 STgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~t 401 (800)
T 3oc3_A 352 SKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKN 401 (800)
T ss_dssp THHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHH
Confidence 1222222 233444333333333445555555555555555555555543
No 128
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=69.08 E-value=50 Score=34.48 Aligned_cols=137 Identities=11% Similarity=0.223 Sum_probs=80.1
Q ss_pred HHHHHHHHhhhch-hhHHHHHHHHHHHHhhCc-ccHHHHHHHHHHhh---ccCC-hhhHHHHHHHHHhcccCccCC-HHH
Q 006763 350 ISVLLELIKIKVN-YVVQEAIIVIKDIFRRYP-NTYESIIATLCESL---DTLD-EPEAKASMIWIIGEYAERIDN-ADE 422 (632)
Q Consensus 350 v~~Ll~ll~~~~~-~v~~e~i~~l~~ilr~~p-~~~~~ii~~L~~~l---~~i~-~p~a~~~~iWiLGEy~~~i~~-~~~ 422 (632)
-+++.+++-.... .-..|.+..+..|++.+. -+.+.-...+.+.+ ...+ -+.-...+.+++-.|.+.-+. +..
T Consensus 217 ~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~ 296 (392)
T 2jak_A 217 NNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP 296 (392)
T ss_dssp HHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHH
Confidence 3445555544332 234677788888887752 12222222233322 1111 111234566666666554322 577
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHH---HHHhhhcCCCChHHHhhHHHHHH
Q 006763 423 LLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQV---VLNNATVETDNPDLRDRAYIYWR 487 (632)
Q Consensus 423 ~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~---ll~~~~~~s~~~dvrdRA~~y~~ 487 (632)
+++.+++.++-.++.-+...|.-+..+.-..+.++.++.... .+..|. +|.+..|-+||..+|.
T Consensus 297 vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci-~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 297 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCV-SSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH-TCSSHHHHHHHHGGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHhC
Confidence 888888888887777777778777777766654433433333 344565 5789999999999985
No 129
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=68.21 E-value=1.1e+02 Score=31.93 Aligned_cols=135 Identities=12% Similarity=0.247 Sum_probs=83.1
Q ss_pred HHHHHHHhhhch-hhHHHHHHHHHHHHhhC--cccHHHHHHHHHHhh---ccCC-hhhHHHHHHHHHhcccCccCC-HHH
Q 006763 351 SVLLELIKIKVN-YVVQEAIIVIKDIFRRY--PNTYESIIATLCESL---DTLD-EPEAKASMIWIIGEYAERIDN-ADE 422 (632)
Q Consensus 351 ~~Ll~ll~~~~~-~v~~e~i~~l~~ilr~~--p~~~~~ii~~L~~~l---~~i~-~p~a~~~~iWiLGEy~~~i~~-~~~ 422 (632)
+++..++-.... .-..|.+..+..|++.+ |-..+ -...|.+.| ...+ .+.-...+..++-.|.+.-+. +..
T Consensus 173 nif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkee-hk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~ 251 (403)
T 3fga_B 173 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE-HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP 251 (403)
T ss_dssp HHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHH-HHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHH-HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH
Confidence 344454433332 23467888888888876 32222 222233322 2222 122245667777777654332 678
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHH---HHHhhhcCCCChHHHhhHHHHHH
Q 006763 423 LLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQV---VLNNATVETDNPDLRDRAYIYWR 487 (632)
Q Consensus 423 ~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~---ll~~~~~~s~~~dvrdRA~~y~~ 487 (632)
+++.++..++..++.-+...|.-+..+.-..++++.+..... .+..|. +|.+..|-+||..+|.
T Consensus 252 vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci-~S~hfqVAErAL~~wn 318 (403)
T 3fga_B 252 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCV-SSPHFQVAERALYYWN 318 (403)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-TCSCHHHHHHHHGGGG
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHhc
Confidence 899999999998888888888888888766654334433333 334455 5789999999999983
No 130
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=67.80 E-value=19 Score=34.71 Aligned_cols=82 Identities=12% Similarity=0.100 Sum_probs=48.3
Q ss_pred CCCChHHHhHHHHHhcCCC---chhhHHHHHHHHHhhhCCCChHHHH-HHHHHHHHhhhhccccccccchHHHHHHHhcC
Q 006763 56 QDPNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRK-TAAICVAKLYDINAELVEDRGFLESLKDLISD 131 (632)
Q Consensus 56 ~~~np~ir~lALr~L~~I~---~~ei~~~l~~~v~~~L~d~~pyVRK-~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D 131 (632)
.++....|++|+..+.... .++-.+.+...|. ...+.-|-= -|...+.+++..+|+... +.+.....|
T Consensus 71 ~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~~l~---~~~nWd~~D~~a~~~~g~~~~~~p~~~~-----~~l~~W~~s 142 (232)
T 3jxy_A 71 DLPEREFQAAALDIMQKYKKHINETHIPFLEELIV---TKSWWDSVDSIVPTFLGDIFLKHPELIS-----AYIPKWIAS 142 (232)
T ss_dssp TSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHHHHT---SSCCHHHHHHHTTTHHHHHHHHCGGGGG-----GTHHHHHHS
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc---cCCChHHHHHhhHHHHHHHHHHCHHHHH-----HHHHHHhcC
Confidence 3455568888888876431 2333333332222 234554433 233456677888887332 457778888
Q ss_pred CChhHHHHHHHHHH
Q 006763 132 NNPMVVANAVAALA 145 (632)
Q Consensus 132 ~d~~Vv~~Al~aL~ 145 (632)
.|+-+...|+..+.
T Consensus 143 ~~~w~rR~ai~~~l 156 (232)
T 3jxy_A 143 DNIWLQRAAILFQL 156 (232)
T ss_dssp SCHHHHHHHHHTTT
T ss_pred CchHHHHHHHHHHH
Confidence 89988888876653
No 131
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=67.41 E-value=50 Score=29.49 Aligned_cols=98 Identities=11% Similarity=-0.012 Sum_probs=65.9
Q ss_pred hhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCC---Cchh----h-HHHHHHHHHh
Q 006763 17 CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI---RVDK----I-TEYLCDPLQR 88 (632)
Q Consensus 17 l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I---~~~e----i-~~~l~~~v~~ 88 (632)
.......+.---+-+-++-....+++-.--++-.|+|=++++||.+.-+||..|-.+ +.+. + -+.+...+.+
T Consensus 19 ATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~k 98 (149)
T 3g2s_A 19 ATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIK 98 (149)
T ss_dssp HSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHH
T ss_pred HcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH
Confidence 444344444444566677777888888999999999999999999999998876543 1111 1 1234445666
Q ss_pred hhCC------CChHHHHHHHHHHHHhhhhccc
Q 006763 89 CLKD------DDPYVRKTAAICVAKLYDINAE 114 (632)
Q Consensus 89 ~L~d------~~pyVRK~A~~al~kl~~~~p~ 114 (632)
.+.+ .++-||++....+.......++
T Consensus 99 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 99 VVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 6653 6788999988877665554443
No 132
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=65.47 E-value=1.2e+02 Score=36.78 Aligned_cols=314 Identities=8% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHH
Q 006763 67 VRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAE 146 (632)
Q Consensus 67 Lr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~e 146 (632)
+|.|-.+..+ +.+...+.+.+.-....+++-.+-.+..+. +.-++......|.++|.+ |+......+-+|..
T Consensus 146 lRwLD~ivd~---~~l~~ki~~vl~vap~~lQ~diI~sLPeIl----~ds~H~~v~~~L~~lL~~-~~~L~~~iLdaLs~ 217 (1323)
T 3s4w_B 146 LKWLDRIVDG---KDLTAQMMQLISVAPVNLQHDFITSLPEIL----GDSQHANVGKELGELLVQ-NTSLTVPILDVFSS 217 (1323)
T ss_dssp GTTCSCCSSH---HHHHHHHHHHHHHSCTTTHHHHHHTHHHHS----CGGGHHHHHHHHHHHHHH-CSTTHHHHHHHHHH
T ss_pred HhhhcccCCH---HHHHHHHHHHHHhCcHHHHHHHHHHhHHHh----cchhhHHHHHHHHHHHhc-CcchHHHHHHHHHc
Q ss_pred HHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhccccCCHHHHHHHHHHHHHhhcC-----------------
Q 006763 147 IEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQH----------------- 209 (632)
Q Consensus 147 I~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~y~~~~~~~~~~il~~v~~~L~~----------------- 209 (632)
+.-.. ++......+.++.+..++.+.--.++++|-... +..++.+++..+-..|+.
T Consensus 218 L~Ls~-----~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~--t~~~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k 290 (1323)
T 3s4w_B 218 LRLDP-----NFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSV--TDTTSLEVIAELRENLNVQQFILPSRIQASQSKLK 290 (1323)
T ss_dssp SCCCH-----HHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSC--SSTTHHHHHHHHHHHHHCC----------------
T ss_pred CCCCH-----HHHHHHHHHHHHHhccCChhhhHHHHHHHHHhC--CHhhHHHHHHHHHHHcCccccccchhhhhhhhhhh
Q ss_pred --------------CCHHH--HHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccCchhHHHHHHHHHHHHHhhCcc
Q 006763 210 --------------ANCAV--VLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPT 273 (632)
Q Consensus 210 --------------~n~aV--v~eaik~i~~~~~~i~~~~~~~~~~~~~~~~L~~Lls~~~niryvaL~~l~~i~~~~p~ 273 (632)
.+.++ ++++++.-+.+ ++...+.+.+.+.. ..+..+.+.+=+-.|..|...+.
T Consensus 291 ~~~~~~~~~~~~~s~~~~~~lild~lks~l~~-----~k~i~eAwlK~I~~-----~~~~~~hk~~Dl~vLlii~s~n~- 359 (1323)
T 3s4w_B 291 SKGLASSSGNQENSDKDCIVLVFDVIKSAIRY-----EKTISEAWFKAIER-----IESAAEHKSLDVVMLLIIYSTST- 359 (1323)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHH-----GGGSTTCCTHHHHHHHHHHHHCH-
T ss_pred ccccccCCccccccccchHHHHHHHHHHHHhc-----ChHHHHHHHHHHhC-----CCcccccchhHHHHHHHHHcCCc-
Q ss_pred chhcccceeEeccCCchhHHHHHHHHHHH---hcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhh-HHHH
Q 006763 274 ILAHEIKVFFCKYNDPIYVKMEKLEIMIK---LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA-AERC 349 (632)
Q Consensus 274 ~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~---L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~-~~~~ 349 (632)
..++....++-+.--.-.+...-+.-.+. -+=+.-+..|+.=.-..+++.+..++.=....-..+=.-|... -+.+
T Consensus 360 ~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeV 439 (1323)
T 3s4w_B 360 QTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEV 439 (1323)
T ss_dssp HHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHH
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHhhCccc---HHHHHHHHHHhhccCChhhHHHHH
Q 006763 350 ISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT---YESIIATLCESLDTLDEPEAKASM 406 (632)
Q Consensus 350 v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~---~~~ii~~L~~~l~~i~~p~a~~~~ 406 (632)
+..|+..+..++..-+..+..++..+.+.+|+. +...+..+.+++++....+.+..+
T Consensus 440 l~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a~~l~giLD~l~~l~~~QiRklf 499 (1323)
T 3s4w_B 440 VGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNAAFVKGILDYLENMSPQQIRKIF 499 (1323)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHGGGGGGGGCCHHHHHHHH
T ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHHHHhhcCCCHHHHHHHH
No 133
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=63.69 E-value=20 Score=32.64 Aligned_cols=53 Identities=9% Similarity=0.098 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCC
Q 006763 99 KTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (632)
Q Consensus 99 K~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~ 154 (632)
...++-+.-+.+..++... ..+..|++-|..+||.|+..|+.+|-.+.+ +|+.
T Consensus 33 w~~~leicD~I~~~~~~~k--eA~ral~krl~~~n~~vql~AL~LLd~~vk-NcG~ 85 (163)
T 1x5b_A 33 WSLIMDICDKVGSTPNGAK--DCLKAIMKRVNHKVPHVALQALTLLGACVA-NCGK 85 (163)
T ss_dssp HHHHHHHHHHHHHSSSHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HTCH
T ss_pred HHHHHHHHHHHhCCCccHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HhhH
Confidence 4566777777777776554 366778888899999999999988766555 4553
No 134
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=63.58 E-value=1e+02 Score=32.77 Aligned_cols=150 Identities=11% Similarity=0.232 Sum_probs=90.0
Q ss_pred HHHHHHHhhhch-hhHHHHHHHHHHHHhhCc-ccHHHHHHHHHHhh---ccCC-hhhHHHHHHHHHhcccCccCC-HHHH
Q 006763 351 SVLLELIKIKVN-YVVQEAIIVIKDIFRRYP-NTYESIIATLCESL---DTLD-EPEAKASMIWIIGEYAERIDN-ADEL 423 (632)
Q Consensus 351 ~~Ll~ll~~~~~-~v~~e~i~~l~~ilr~~p-~~~~~ii~~L~~~l---~~i~-~p~a~~~~iWiLGEy~~~i~~-~~~~ 423 (632)
+++.+++-.... .-..|.+..+..|++.+. -+.+.-...+.+.| ...+ .+.-..-+++++-.|.+.-+. +..+
T Consensus 206 nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v 285 (449)
T 2npp_B 206 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV 285 (449)
T ss_dssp HHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH
Confidence 344444433222 334678888888887652 12222222333322 2211 122245667777777654332 6788
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHH---HHHHHHhhhcCCCChHHHhhHHHHHH------HhcCCHH
Q 006763 424 LESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQM---IQVVLNNATVETDNPDLRDRAYIYWR------LLSTDPE 494 (632)
Q Consensus 424 l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~---v~~ll~~~~~~s~~~dvrdRA~~y~~------LL~~~~~ 494 (632)
++.++..++-.++.-+...|.-+..+.-..++++.++. +-+.+..|. +|.+..|-+||..+|. +++.+.+
T Consensus 286 i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci-~S~hfqVAErAL~~w~N~~i~~li~~n~~ 364 (449)
T 2npp_B 286 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCV-SSPHFQVAERALYYWNNEYIMSLISDNAA 364 (449)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-TCSCHHHHHHHHGGGGCHHHHHHHHTTHH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCHHHHHHHHhchh
Confidence 99999999998888888888888888765554334433 333344565 5789999999999985 4455555
Q ss_pred HHHhhhc
Q 006763 495 AAKDVVL 501 (632)
Q Consensus 495 ~~~~ivl 501 (632)
..-.+++
T Consensus 365 ~IlPii~ 371 (449)
T 2npp_B 365 KILPIMF 371 (449)
T ss_dssp HHHHHHH
T ss_pred hhHHhhH
Confidence 4444443
No 135
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=61.14 E-value=1.5e+02 Score=30.25 Aligned_cols=106 Identities=18% Similarity=0.334 Sum_probs=66.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhh----------hccCChHHHHHHHHhcccchhhhcc-CchhHHHHHHHHHHHH
Q 006763 199 IVERVTPRLQHANCAVVLSAVKMILQQM----------ELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLI 267 (632)
Q Consensus 199 il~~v~~~L~~~n~aVv~eaik~i~~~~----------~~i~~~~~~~~~~~~~~~~L~~Lls-~~~niryvaL~~l~~i 267 (632)
+......+|++.|.-....++|++..++ .++++++.++. ++.||. ++.+|||-|...+...
T Consensus 210 Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl--------~M~LL~d~sk~Iq~EAFhVFKvF 281 (341)
T 1upk_A 210 FFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKL--------MMNLLRDKSRNIQFEAFHVFKVF 281 (341)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHH--------HHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHH--------HHHHhcCchhchhhhhhhheeee
Confidence 3444446788888888888888887654 23444443332 346674 6789999999888776
Q ss_pred HhhCccchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhc--CHHHHHH---HHHHHH
Q 006763 268 VQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEV--DVDFVRK---AVRAIG 336 (632)
Q Consensus 268 ~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~--d~~~~~~---~i~aIg 336 (632)
+. +| +.|..|. +||.+ |-+.++.-|..|..+. |.+|..+ +|+.|.
T Consensus 282 VA-NP--------------~K~~~I~----~IL~~-----Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~ 331 (341)
T 1upk_A 282 VA-NP--------------NKTQPIL----DILLK-----NQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIR 331 (341)
T ss_dssp HH-CS--------------SCCHHHH----HHHHH-----THHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHH
T ss_pred ee-CC--------------CCChHHH----HHHHH-----HHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHH
Confidence 65 23 3333332 34433 6677777788887654 6677765 444443
No 136
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=57.97 E-value=65 Score=28.67 Aligned_cols=82 Identities=10% Similarity=0.026 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC---ch----hh-HHHHHHHHHhhhCC------CC
Q 006763 29 VYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD----KI-TEYLCDPLQRCLKD------DD 94 (632)
Q Consensus 29 ~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~---~~----ei-~~~l~~~v~~~L~d------~~ 94 (632)
+.+-++-..+.+++-.--++-+|+|=++++||.+.-+||..|-.+. .+ ++ -..+...+.+.+.+ .+
T Consensus 21 ~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~ 100 (148)
T 1mhq_A 21 AIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWAT 100 (148)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCC
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCC
Confidence 3455566666677788889999999999999999999998775431 11 22 13555566766653 47
Q ss_pred hHHHHHHHHHHHHhhh
Q 006763 95 PYVRKTAAICVAKLYD 110 (632)
Q Consensus 95 pyVRK~A~~al~kl~~ 110 (632)
+-||+++...+.....
T Consensus 101 ~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 101 GKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888887776554443
No 137
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=56.68 E-value=70 Score=30.35 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCC------------CchhhHHHHHHHHHhhhCCCChH
Q 006763 29 VYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI------------RVDKITEYLCDPLQRCLKDDDPY 96 (632)
Q Consensus 29 ~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I------------~~~ei~~~l~~~v~~~L~d~~py 96 (632)
..+.+.-..+.+++..--++-.|+|=++++||.++-+||..|-.+ ...++.+.+...+.+ ..++-
T Consensus 25 ~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~ 101 (220)
T 1dvp_A 25 SILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TPHEN 101 (220)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHH
T ss_pred HHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHH
Confidence 345566666777778889999999999999999999999777553 333444444333322 46788
Q ss_pred HHHHHHHHHHH
Q 006763 97 VRKTAAICVAK 107 (632)
Q Consensus 97 VRK~A~~al~k 107 (632)
||+++..-+..
T Consensus 102 Vk~kil~li~~ 112 (220)
T 1dvp_A 102 VRQKMLELVQT 112 (220)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887665443
No 138
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=54.89 E-value=64 Score=29.47 Aligned_cols=98 Identities=8% Similarity=-0.006 Sum_probs=64.8
Q ss_pred HhhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCChHHHhHHHHHhcCCC---ch----hhH-HHHHHHHH
Q 006763 16 NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD----KIT-EYLCDPLQ 87 (632)
Q Consensus 16 ~l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~~~np~ir~lALr~L~~I~---~~----ei~-~~l~~~v~ 87 (632)
++......+.---..+-++-..+.+++-..-++-.|+|=++++||.++-+||..|-.+. .+ +++ ..++..+.
T Consensus 20 kATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~ 99 (171)
T 1juq_A 20 KATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI 99 (171)
T ss_dssp HHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred HHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 34443333444444566677777777888889999999999999999999998775431 11 111 13344556
Q ss_pred hhhC------CCChHHHHHHHHHHHHhhhhcc
Q 006763 88 RCLK------DDDPYVRKTAAICVAKLYDINA 113 (632)
Q Consensus 88 ~~L~------d~~pyVRK~A~~al~kl~~~~p 113 (632)
+++. ..++-||+++...+.......+
T Consensus 100 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 131 (171)
T 1juq_A 100 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALP 131 (171)
T ss_dssp HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 6664 2578999998887776555443
No 139
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=54.20 E-value=34 Score=31.35 Aligned_cols=67 Identities=12% Similarity=-0.002 Sum_probs=45.1
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCC
Q 006763 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (632)
Q Consensus 84 ~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~ 153 (632)
..|.++-.....-.-...++-+.-+.+..++... ..+..|++-|..+|+.|+..|+.+|-.+.++ |+
T Consensus 16 ~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k--~A~ral~krl~~~n~~vql~AL~LLd~~vkN-CG 82 (171)
T 1juq_A 16 SWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQ--IAVRLLAHKIQSPQEWEALQALTVLEACMKN-CG 82 (171)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-SH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-cC
Confidence 3344544443222234677788888877776544 3667888889999999999999888655544 54
No 140
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=53.22 E-value=1.2e+02 Score=26.89 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=41.6
Q ss_pred hccCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhh-hhcCHHH
Q 006763 249 LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYA-TEVDVDF 327 (632)
Q Consensus 249 Lls~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl-~~~d~~~ 327 (632)
+-+++|++++.+|..+..+++....-|..++. +++-++-|.+++.+. |. ...+..+
T Consensus 57 l~~~n~~v~l~AL~LLe~cvkNCG~~fh~eia------------s~~Fl~eL~kl~~~k-----------~~~~~~~~~V 113 (149)
T 3g2s_A 57 IQSPQEWEAIQALTVLETCMKSCGKRFHDEVG------------KFRFLNELIKVVSPK-----------YLGSRTSEKV 113 (149)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHT------------SHHHHHHHHHHHCTT-----------TTGGGSCHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHh------------hHHHHHHHHHHHccc-----------ccCCCCCHHH
Confidence 33567888888888888877776555533221 111222223333221 22 1356677
Q ss_pred HHHHHHHHHHHHHhhhhhH
Q 006763 328 VRKAVRAIGRCAIKLERAA 346 (632)
Q Consensus 328 ~~~~i~aIg~la~k~~~~~ 346 (632)
+.+++..|..-+..|+...
T Consensus 114 k~kil~li~~W~~~f~~~p 132 (149)
T 3g2s_A 114 KNKILELLYSWTVGLPEEV 132 (149)
T ss_dssp HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 7777777777776665543
No 141
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=52.20 E-value=1.8e+02 Score=28.55 Aligned_cols=69 Identities=13% Similarity=0.037 Sum_probs=42.9
Q ss_pred CchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhh----cCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 006763 288 DPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATE----VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELI 357 (632)
Q Consensus 288 dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~----~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll 357 (632)
+...+++..-.+|-+| +++|++.|+.+|.+.... .+.+..+.+|+.|-.=|..-|....-|.+..-.+.
T Consensus 32 ~~e~l~r~vkgiLNKL-T~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~If~kA~~ep~fs~~YA~Lc~~l~ 104 (284)
T 2vso_E 32 DKDEVERKMKSLLNKL-TLEMFDAISSEILAIANISVWETNGETLKAVIEQIFLKACDEPHWSSMYAQLCGKVV 104 (284)
T ss_dssp CHHHHHHHHHHHHHSC-CSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 3456777666777765 689999999999975431 34445556677666555554544444544444443
No 142
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=51.33 E-value=45 Score=29.38 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCch
Q 006763 99 KTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (632)
Q Consensus 99 K~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~ 156 (632)
...++-+.-+.+..|+... ..+..|++-|..+||.|+..|+.+| +.+-.+|+..|
T Consensus 23 w~~ileicD~I~~~~~~~k--~a~rai~Krl~~~n~~~ql~AL~LL-e~~vkNcG~~f 77 (140)
T 3ldz_A 23 WGLILDICDKVGQSRTGPK--DCLRSIMRRVNHKDPHVAMQALTLL-GACVSNCGKIF 77 (140)
T ss_dssp HHHHHHHHHHHTTSTTHHH--HHHHHHHHHHTCSSHHHHHHHHHHH-HHHHHHSCHHH
T ss_pred HHHHHHHHHHHHCCCcCHH--HHHHHHHHHHcCCChHHHHHHHHHH-HHHHHhcCHHH
Confidence 3566777777777665444 3567788888999999999998877 44445565433
No 143
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=47.42 E-value=3.7e+02 Score=30.73 Aligned_cols=72 Identities=18% Similarity=0.329 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhcc---ccccccchHHHHHHHhcC---CChhHHHHHHHHHHHHH
Q 006763 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISD---NNPMVVANAVAALAEIE 148 (632)
Q Consensus 76 ~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p---~~v~~~~~~~~L~~lL~D---~d~~Vv~~Al~aL~eI~ 148 (632)
.++++.+.|.+..++.+++..|...+..|+..+..+.| +.+-+ .+++.++..|.. ..+.=+.+|+.+|..++
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 57788899999999999999999999999999999999 98874 677888888866 56666777777776665
No 144
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=45.04 E-value=2.1e+02 Score=27.29 Aligned_cols=68 Identities=12% Similarity=0.027 Sum_probs=46.2
Q ss_pred chhHHHHHHHHHHHhcC-cccHHHHHHHHHHhhh--hcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006763 289 PIYVKMEKLEIMIKLAS-DRNIDQVLLEFKEYAT--EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLEL 356 (632)
Q Consensus 289 d~~Ik~~kL~lL~~L~n-~~Ni~~Iv~EL~~yl~--~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~l 356 (632)
...+++..-.+|-+|+. ++|++.+++++.+.+. ..+.+....+|+.|-.=|..-|....-|.+..-.+
T Consensus 16 ~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l 86 (234)
T 3rk6_A 16 GSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYL 86 (234)
T ss_dssp --CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45678888889999884 8999999999998763 24667777788877666655444444444443333
No 145
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=44.26 E-value=3.2e+02 Score=29.15 Aligned_cols=300 Identities=12% Similarity=0.173 Sum_probs=139.6
Q ss_pred HhHHHHHhcCCCchhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHH
Q 006763 63 RALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVA 142 (632)
Q Consensus 63 r~lALr~L~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~ 142 (632)
...-++.|+.+...++++|+..-+-.++.+ +||-. ...++|..+|+... ......+.-.++.++-+|..
T Consensus 79 ~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~-~~~~~-----~~~~~f~~~~~~~~-----~l~~~~~~~dd~~~ll~a~~ 147 (480)
T 1ho8_A 79 LIPLIHLLSTSDNEDCKKSVQNLIAELLSS-DKYGD-----DTVKFFQEDPKQLE-----QLFDVSLKGDFQTVLISGFN 147 (480)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHC-SSSSH-----HHHHHHHHCTTHHH-----HHHHHCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHHhc-CcchH-----HHHHHHhhCcccch-----HHHHHHhcccchHHHHHHHH
Confidence 334789999999999999999999999998 45543 33566777776543 22222333334555555555
Q ss_pred HHHHHHhcCCCCchhccHHHHH--HHHHHhhccC----hhhHHHHHHHHhccc-------cCCHHHHHHHHHHHHHhhcC
Q 006763 143 ALAEIEENSSRPIFEITSHTLS--KLLTALNECT----EWGQVFILDALSRYK-------AADAREAENIVERVTPRLQH 209 (632)
Q Consensus 143 aL~eI~~~~~~~~~~l~~~~~~--~Ll~~l~~~~----ew~qi~lL~lL~~y~-------~~~~~~~~~il~~v~~~L~~ 209 (632)
++.-+...+... -+.....+. .++..+...+ .+.-+..|+.|.+.. ..+......++..+.+.+.+
T Consensus 148 l~~ll~~~~~~~-~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~ 226 (480)
T 1ho8_A 148 VVSLLVQNGLHN-VKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDS 226 (480)
T ss_dssp HHHHHTSTTTCC-HHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhccCCcc-HhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcc
Confidence 444443322221 111122222 2444444422 123333444333211 00000011122222222221
Q ss_pred C-------------CHHHHHHHHHHHHHhhhccCChHHHHHHHHhcc---cchhhhcc--CchhHHHHHHHHHHHHHhhC
Q 006763 210 A-------------NCAVVLSAVKMILQQMELITSTDVVRNLCKKMA---PPLVTLLS--AEPEIQYVALRNINLIVQRR 271 (632)
Q Consensus 210 ~-------------n~aVv~eaik~i~~~~~~i~~~~~~~~~~~~~~---~~L~~Lls--~~~niryvaL~~l~~i~~~~ 271 (632)
. +.=+.|+++-|+..+. . +++..+.+..+-. ..|+.++. ..--+--+++..+..++...
T Consensus 227 ~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLS--F-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~ 303 (480)
T 1ho8_A 227 QLATRIVATNSNHLGIQLQYHSLLLIWLLT--F-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTR 303 (480)
T ss_dssp ------------CCHHHHHHHHHHHHHHHT--T-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSS
T ss_pred ccccccccccCCCccHHHHHHHHHHHHHHH--c-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhccc
Confidence 1 1235788877766442 1 3444444433211 12222232 11223333444444444333
Q ss_pred c----cchh---------ccccee-EeccCCc-hh--HHHHHHHHHHHhcCcccHHHHHHHHHH-hhhh----cCHHHHH
Q 006763 272 P----TILA---------HEIKVF-FCKYNDP-IY--VKMEKLEIMIKLASDRNIDQVLLEFKE-YATE----VDVDFVR 329 (632)
Q Consensus 272 p----~~~~---------~~~~~f-~~l~~dd-~~--Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~-yl~~----~d~~~~~ 329 (632)
+ ..+. +.+..+ ...++|+ .+ ++...=.+=-.+-+-+++++...|+.. .++. .+..|=+
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ 383 (480)
T 1ho8_A 304 VKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWS 383 (480)
T ss_dssp STTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHH
T ss_pred chhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHH
Confidence 1 1000 001111 1123332 22 222222222223345667777777773 3332 3555655
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh----------chhhHHHHHHHHHHHHhhCcccHH
Q 006763 330 KAVRAIGRCAIKLERAAERCISVLLELIKIK----------VNYVVQEAIIVIKDIFRRYPNTYE 384 (632)
Q Consensus 330 ~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~----------~~~v~~e~i~~l~~ilr~~p~~~~ 384 (632)
+= +.||....-..+..|.++|+.. .+.+..=+..=+...+|.||+.+.
T Consensus 384 EN-------a~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~ 441 (480)
T 1ho8_A 384 DN-------IDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESID 441 (480)
T ss_dssp HH-------SGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred HH-------HHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhH
Confidence 42 4566666667889999999742 122222234567888999998763
No 146
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=44.01 E-value=1.6e+02 Score=26.21 Aligned_cols=107 Identities=11% Similarity=0.044 Sum_probs=62.6
Q ss_pred CCCCcchhHHHHH-hhcCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcC-CCChHHHhHHHHHhcCCC---ch--
Q 006763 4 GKDVSSLFTDVVN-CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIR---VD-- 76 (632)
Q Consensus 4 G~Dvs~lf~~vi~-l~~s~d~~~Krl~YLyl~~~~~~~~el~lL~iNtl~kDl~-~~np~ir~lALr~L~~I~---~~-- 76 (632)
|+..+.-+-..|. +......+.---.-+-++-..+.+++-..-++-+|+|=++ ++|+.++-+||..|-.+. .+
T Consensus 10 ~~p~~s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~f 89 (157)
T 1elk_A 10 GNPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRF 89 (157)
T ss_dssp SCGGGSHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCCCcHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence 3444433344443 4433333333334455666666777888999999999998 589998888888775331 11
Q ss_pred --hhH-HHHHHH-HHhhhC---CCChHHHHHHHHHHHHhhh
Q 006763 77 --KIT-EYLCDP-LQRCLK---DDDPYVRKTAAICVAKLYD 110 (632)
Q Consensus 77 --ei~-~~l~~~-v~~~L~---d~~pyVRK~A~~al~kl~~ 110 (632)
+++ +.+... +.+.+. +++.-||+++...+.....
T Consensus 90 h~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 90 HVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 111 123333 344443 3456899988776655443
No 147
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=40.40 E-value=92 Score=27.91 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=42.9
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHhhhhccccccccchHHHHHHHhc-CCChhHHHHHHHHHHHHHhcCCCC
Q 006763 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRP 154 (632)
Q Consensus 84 ~~v~~~L~d~~pyVRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~-D~d~~Vv~~Al~aL~eI~~~~~~~ 154 (632)
..|.++-....+---....+-+.-+.+..++... ..+..|++-|+ .+|+.|+..|+.+|..+.++ |+.
T Consensus 19 ~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k--~a~ral~krl~~~~n~~v~l~AL~LLd~~vkN-cG~ 87 (157)
T 1elk_A 19 QRIEKATDGSLQSEDWALNMEICDIINETEEGPK--DALRAVKKRIVGNKNFHEVMLALTVLETCVKN-CGH 87 (157)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHH--HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-SCH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-hCH
Confidence 3344444432222234666777777776665444 36677888887 58999999999887665554 543
No 148
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=40.15 E-value=3.7e+02 Score=29.90 Aligned_cols=122 Identities=10% Similarity=0.130 Sum_probs=80.4
Q ss_pred cccHHHHHHHHHHh-h-hhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccH
Q 006763 306 DRNIDQVLLEFKEY-A-TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY 383 (632)
Q Consensus 306 ~~Ni~~Iv~EL~~y-l-~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~ 383 (632)
......+|..++.+ - ...+..|++.-+.-|+.++.-.+.....|+..|+.-+...... ...+=..++.|++-.|-..
T Consensus 131 ~~~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa~~~yl~~vl~mLV~~F~~~~~~-~~~~H~~L~~Il~lvP~s~ 209 (649)
T 3tj1_A 131 SSRGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSSIPKWWQDVSMILVSCFILPIKQ-TVCHHDMLKYFLRMIPSSM 209 (649)
T ss_dssp SGGGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHHHCGGGH
T ss_pred chhHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCCcc-cHHHHHHHHHHHHHcCCCH
Confidence 34466788888866 2 3467889999999999998777777677777776666543221 1223347888999999888
Q ss_pred HHHHHHHHHhhccCChhhH-----HHHHHHHHhcccCccCCHHHHHHHHhhhC
Q 006763 384 ESIIATLCESLDTLDEPEA-----KASMIWIIGEYAERIDNADELLESFLESF 431 (632)
Q Consensus 384 ~~ii~~L~~~l~~i~~p~a-----~~~~iWiLGEy~~~i~~~~~~l~~l~~~f 431 (632)
..+...|.+.+-....+.. ...++|+.+ |+..+ ..+++..++++.
T Consensus 210 ~~L~~iL~~~FP~~~~s~~~~~~Yv~NLLrl~~-Y~PeL--~~~Il~LIierl 259 (649)
T 3tj1_A 210 GFIDTYLAKFFPNKNDTRRKLVNYTSNLLKLRG-YCSEL--GFQIWSLLIEKI 259 (649)
T ss_dssp HHHHHHHHHTCCCTTSCHHHHHHHHHHHHHHHH-HCGGG--HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHh-hchHH--HHHHHHHHHHHH
Confidence 8888888877765555433 245667775 76644 344554444443
No 149
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=39.03 E-value=3.3e+02 Score=27.70 Aligned_cols=112 Identities=19% Similarity=0.279 Sum_probs=67.8
Q ss_pred CchhHHHHHHHHHHHHHhhCccchhc----ccceeE-----eccCCchhHHHHHHHHHHHh-cCcccHHHHHHHHHHhhh
Q 006763 252 AEPEIQYVALRNINLIVQRRPTILAH----EIKVFF-----CKYNDPIYVKMEKLEIMIKL-ASDRNIDQVLLEFKEYAT 321 (632)
Q Consensus 252 ~~~niryvaL~~l~~i~~~~p~~~~~----~~~~f~-----~l~~dd~~Ik~~kL~lL~~L-~n~~Ni~~Iv~EL~~yl~ 321 (632)
+.-++.-=|..++..+..+++.++.. ++..|| ++.++..-+||.+|.+|..+ .+..|... +..|+.
T Consensus 176 ~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~v----M~~Yis 251 (341)
T 1upk_A 176 STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTI----MTKYIS 251 (341)
T ss_dssp SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHH----HHHHTT
T ss_pred CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHH----HHHHhC
Confidence 45567777788888887777655432 222222 23333344455555555443 23333322 112222
Q ss_pred hcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 006763 322 EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCE 392 (632)
Q Consensus 322 ~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr~~p~~~~~ii~~L~~ 392 (632)
....+..++.+|+.....|.-|+.++++-.+ .+|+.-..+...|..
T Consensus 252 ------------------------~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV-ANP~K~~~I~~IL~~ 297 (341)
T 1upk_A 252 ------------------------KPENLKLMMNLLRDKSRNIQFEAFHVFKVFV-ANPNKTQPILDILLK 297 (341)
T ss_dssp ------------------------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH-HCSSCCHHHHHHHHH
T ss_pred ------------------------CHHHHHHHHHHhcCchhchhhhhhhheeeee-eCCCCChHHHHHHHH
Confidence 2356789999999999999999999998555 578876666665543
No 150
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=37.73 E-value=1.1e+02 Score=30.85 Aligned_cols=76 Identities=14% Similarity=0.243 Sum_probs=39.9
Q ss_pred HHHHHHHHhcccCcc-CCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhh
Q 006763 403 KASMIWIIGEYAERI-DNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDR 481 (632)
Q Consensus 403 ~~~~iWiLGEy~~~i-~~~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~e~~~~~v~~ll~~~~~~s~~~dvrdR 481 (632)
.-+++|.+.---..+ +.+-+++..+++++.. .+++. ....+-| ..++++.++...|..+.-.-.+..
T Consensus 169 idsiiWa~kH~~r~V~e~gL~il~~ll~n~~~-~~~~~----~~Fy~~f-------y~~il~~if~VlTDs~Hk~gF~~q 236 (321)
T 1w9c_A 169 LDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ-EEAAA----QSFYQTY-------FCDILQHIFSVVTDTSHTAGLTMH 236 (321)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH-CHHHH----HHHHHHH-------HHHHHHHHHHHHHSSSCCTTHHHH
T ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc-ChHHH----HHHHHHH-------HHHHHHHHHHHHhCchhhccHHHH
Confidence 356777764322222 2245566666666543 22222 2222222 345677777776654445567777
Q ss_pred HHHHHHHhc
Q 006763 482 AYIYWRLLS 490 (632)
Q Consensus 482 A~~y~~LL~ 490 (632)
+....+|+.
T Consensus 237 ~~iL~~lf~ 245 (321)
T 1w9c_A 237 ASILAYMFN 245 (321)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777664
No 151
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=36.99 E-value=2.3e+02 Score=27.71 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHhcCcccHHHHHHHHH
Q 006763 290 IYVKMEKLEIMIKLASDRNIDQVLLEFK 317 (632)
Q Consensus 290 ~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~ 317 (632)
.|+|...|.++..|+..++ .+|+.-|+
T Consensus 116 E~LRLtsLGVIgaLvK~dd-~eVi~fLL 142 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDE-QEVINFLL 142 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCC-HHHHHHHH
T ss_pred hhhhhhHHHHHHHHhccCc-HHHHHHHH
Confidence 7899999999999885544 34554444
No 152
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=36.06 E-value=1.6e+02 Score=28.04 Aligned_cols=76 Identities=11% Similarity=0.029 Sum_probs=50.9
Q ss_pred ccCCchhHHHHHHH----HHHHhc----CcccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006763 285 KYNDPIYVKMEKLE----IMIKLA----SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLEL 356 (632)
Q Consensus 285 l~~dd~~Ik~~kL~----lL~~L~----n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~l 356 (632)
..+++.+.|+.++. +|..+. ++..+..+++.+...+.+.+.-++..+-.++..++.++++....++++.-++
T Consensus 117 ~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al~~~~~l 196 (235)
T 1t06_A 117 IASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAVEIAKEV 196 (235)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Confidence 34788999999998 766644 3455666666655566665544444444788888888888777777766665
Q ss_pred Hhhh
Q 006763 357 IKIK 360 (632)
Q Consensus 357 l~~~ 360 (632)
-..+
T Consensus 197 ~~~~ 200 (235)
T 1t06_A 197 GIVE 200 (235)
T ss_dssp CEEE
T ss_pred cccc
Confidence 4443
No 153
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=35.97 E-value=1.5e+02 Score=25.25 Aligned_cols=49 Identities=4% Similarity=0.129 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHh
Q 006763 329 RKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (632)
Q Consensus 329 ~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr 377 (632)
+.+|..+...+..+...++.+++++.+.+......-.-..+-++-+|++
T Consensus 21 ~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ 69 (132)
T 4flb_A 21 MESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQ 69 (132)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Confidence 4566666666666666677777777776665443222223334444444
No 154
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=34.16 E-value=3.3e+02 Score=26.26 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=34.3
Q ss_pred HHHHHHHhcccC-ccCC---HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhc
Q 006763 404 ASMIWIIGEYAE-RIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLK 452 (632)
Q Consensus 404 ~~~iWiLGEy~~-~i~~---~~~~l~~l~~~f~~e~~~vq~~iLta~~Kl~~~ 452 (632)
...+-+|||-.. .+-. ..+++..++++..+++.+.=+.+|+.+.+.+-+
T Consensus 147 lg~i~FIgeLy~~~~l~~~i~~~~l~~Ll~~~~e~~iE~l~~lL~tvG~~L~~ 199 (260)
T 1hu3_A 147 IGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDF 199 (260)
T ss_dssp HHHHHHHHHHHTTTCSCHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHCC
T ss_pred HhHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 366788898433 2222 356778888887767777777888888888765
No 155
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=32.43 E-value=1.2e+02 Score=26.69 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=44.3
Q ss_pred HHhhccChhh-HHHHHHHHhccccCCH-HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccCChHHHH
Q 006763 168 TALNECTEWG-QVFILDALSRYKAADA-REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVR 236 (632)
Q Consensus 168 ~~l~~~~ew~-qi~lL~lL~~y~~~~~-~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~ 236 (632)
..-..-+||+ -.++|+=++.....+. +...++++.+..+|++.++-|++.|.+++-++... .++...+
T Consensus 17 ~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~-Gs~~f~~ 86 (140)
T 1vdy_A 17 DAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK-SGSEFRR 86 (140)
T ss_dssp HHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT-SCHHHHH
T ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh-CCHHHHH
Confidence 3333456775 2355555554443332 33478999999999999999999999998887543 2444443
No 156
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=32.25 E-value=3.3e+02 Score=25.72 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=40.2
Q ss_pred hccCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHH
Q 006763 249 LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFV 328 (632)
Q Consensus 249 Lls~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~ 328 (632)
|-+++|++++.+|..|..+++....-|..++.. +.-++-|.++++ ...+..++
T Consensus 54 l~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias------------~~fl~~l~~l~~---------------~~~~~~Vk 106 (226)
T 3zyq_A 54 VNDKNPHVALYALEVMESVVKNCGQTVHDEVAN------------KQTMEELKDLLK---------------RQVEVNVR 106 (226)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSS------------HHHHHHHHHHHH---------------HCCCHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhcchHHHHhhcc------------HHHHHHHHHHhc---------------cCCCHHHH
Confidence 336788999999988888887655544332211 111122222110 23466777
Q ss_pred HHHHHHHHHHHHhhhhh
Q 006763 329 RKAVRAIGRCAIKLERA 345 (632)
Q Consensus 329 ~~~i~aIg~la~k~~~~ 345 (632)
.+++..|..-+..|...
T Consensus 107 ~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 107 NKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 77777777777666543
No 157
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=30.98 E-value=59 Score=38.40 Aligned_cols=97 Identities=7% Similarity=-0.008 Sum_probs=66.2
Q ss_pred HHhcCCCCcHHHHHHHHHHhhcCCCC-hHHHhHHHHHhcCC--Cc-h-hhHHHHHHHHHhhhCC------------CChH
Q 006763 34 INYAKSQPDLAILAVNTFVKDSQDPN-PLIRALAVRTMGCI--RV-D-KITEYLCDPLQRCLKD------------DDPY 96 (632)
Q Consensus 34 ~~~~~~~~el~lL~iNtl~kDl~~~n-p~ir~lALr~L~~I--~~-~-ei~~~l~~~v~~~L~d------------~~py 96 (632)
.++.--.++.--.+.+.+.+=|.|++ .-||-.|-.+|+.+ +. + ...+.++...++.+.. ++--
T Consensus 831 ~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~ 910 (997)
T 1vsy_5 831 AELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDI 910 (997)
T ss_dssp HHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCH
T ss_pred HHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHH
Confidence 44444445544566788888899999 99999999999887 33 2 4444555555555422 1114
Q ss_pred HHHHHHHHHHHhhhhccccccccchHHHHHHHhc
Q 006763 97 VRKTAAICVAKLYDINAELVEDRGFLESLKDLIS 130 (632)
Q Consensus 97 VRK~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~ 130 (632)
.|-.|++|+.-+..-.|=.++.+.|++.+-..|.
T Consensus 911 ~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La 944 (997)
T 1vsy_5 911 KIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLS 944 (997)
T ss_dssp HHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHH
Confidence 6678899999999999988753468866555444
No 158
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=29.37 E-value=2.9e+02 Score=24.26 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=41.8
Q ss_pred hccCchhHHHHHHHHHHHHHhhCccchhcccceeEeccCCchhHHHHHHHHHHHhcCcccHHHHHHHHHHhhh-hcCHHH
Q 006763 249 LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYAT-EVDVDF 327 (632)
Q Consensus 249 Lls~~~niryvaL~~l~~i~~~~p~~~~~~~~~f~~l~~dd~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~-~~d~~~ 327 (632)
+-+++|++++.+|..+..+++....-|..++. ++.-++-|.+++.++ |.. ..+..+
T Consensus 47 l~~~n~~vql~AL~LLe~~vkNCG~~fh~eva------------s~~Fl~eL~kl~~~k-----------~~~~~~~~~V 103 (148)
T 1mhq_A 47 IQSPQEKEALYALTVLEMCMNHCGEKFHSEVA------------KFRFLNELIKVLSPK-----------YLGSWATGKV 103 (148)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHT------------SHHHHHHHHHTTCCS-----------TTSCCCCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHh------------hHHHHHHHHHHHccc-----------cCCCCCCHHH
Confidence 34678889999998888888776555533221 112223333333321 211 245666
Q ss_pred HHHHHHHHHHHHHhhhhhH
Q 006763 328 VRKAVRAIGRCAIKLERAA 346 (632)
Q Consensus 328 ~~~~i~aIg~la~k~~~~~ 346 (632)
+.+++..|..-+..|+...
T Consensus 104 k~kil~li~~W~~~f~~~p 122 (148)
T 1mhq_A 104 KGRVIEILFSWTVWFPEDI 122 (148)
T ss_dssp HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHcCCCc
Confidence 6676666666666665443
No 159
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=29.18 E-value=2.9e+02 Score=24.15 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhc
Q 006763 327 FVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV 361 (632)
Q Consensus 327 ~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~ 361 (632)
..+..|..+..+|...-..+..+++.+.+.+....
T Consensus 21 ~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~ 55 (145)
T 3d9j_A 21 ISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCK 55 (145)
T ss_dssp CCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44677888888888776777777777777666543
No 160
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=24.56 E-value=3.7e+02 Score=32.46 Aligned_cols=242 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhhcCCCC---hHHHhHHHHHhcCCCchhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHH
Q 006763 32 YLINYAKSQPDLAILAVNTFVKDSQDPN---PLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAK 107 (632)
Q Consensus 32 yl~~~~~~~~el~lL~iNtl~kDl~~~n---p~ir~lALr~L~~I~~~ei~~~l~~~v~~~L~d-~~pyVRK~A~~al~k 107 (632)
++........++..+...++.....+.+ +-+.-+|...|-+-+.....+--.-.....+.- +...-.+-+..-+.+
T Consensus 349 Wlr~l~p~~~~v~~~ll~~V~~S~~g~d~Vv~gLV~LgF~LLds~~~k~~~~g~~~e~~~~~~~~p~q~a~~LG~~IL~~ 428 (1308)
T 3s51_A 349 FLQTLVPQRTCVSTMILEVVRNSVHSWDHVTQGLIEFGFILMDSYGPKKILDGKAVEIGTSLSKMTNQHACKLGANILLE 428 (1308)
T ss_dssp HHHHHSCCCCCHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHSCCTTSCC---------CTHHHHHHHHHHHHHHHH
T ss_pred HHHhccCccchHHHHHHHHHhcCcccchhhHHHHHHHHHHHHhccCccccCCCcccccccccccChHHHHHHHHHHHHHH
Q ss_pred hhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcCCCCchhccHHHHHHHHHHhhccChhhHHHHHHHHhc
Q 006763 108 LYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSR 187 (632)
Q Consensus 108 l~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~l~~~~~~~Ll~~l~~~~ew~qi~lL~lL~~ 187 (632)
+|+.++....+ +++.+..-+-....+-+.+.+.+|..|+...+-...+.. .+..++..+.-...=.-..+|+++.-
T Consensus 429 ~Fk~h~~~r~~--Iieqi~~RIv~~~~~~~s~~idlLs~lv~~~p~~l~e~s--kl~e~~dyl~~lp~~~a~~Ll~al~P 504 (1308)
T 3s51_A 429 TFKIHEMIRQE--ILEQVLNRVVTRTSSPINHFLDLFSDIIMYAPLILQNCS--KVTETFDYLTFLPLQTVQGLLKAVQP 504 (1308)
T ss_dssp HHHHCGGGHHH--HHHHHHHHHHHCCSSCCHHHHHHHHHHHHHCHHHHSSCH--HHHGGGGGTTTSCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHH--HHHHHHHHHHhccCcchhHHHHHHHHHHHhccHHHHhhh--HHHHHHHHHhcCCHHHHHHHHHHHhH
Q ss_pred cccCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhccC---------------------------ChHHHHHHHH
Q 006763 188 YKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELIT---------------------------STDVVRNLCK 240 (632)
Q Consensus 188 y~~~~~~~~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~---------------------------~~~~~~~~~~ 240 (632)
....+..-...++-.+-..+-++....+..|+.-|+.++.... ++..-+.++-
T Consensus 505 Lik~s~~lrD~lIlvLRKamf~re~~~R~~AV~GfL~lLk~~~~~~~~sSsq~sQs~~~sQ~~~~~~~~~~~~~Ne~l~l 584 (1308)
T 3s51_A 505 LLKISMSMRDSLILVLRKAMFASQLDARKSAVAGFLLLLKNFKVLGSLPSSQCTQSIGVTQVRVDVHSRYSAVANETFCL 584 (1308)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHEECCTTCC---------CCCEESSSCSSSCSSCCTTHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhhhhhhhcccccccccchhHHHH
Q ss_pred hcccchhhhccCchhHHHHHHHHHHHHHhhCccchhc
Q 006763 241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAH 277 (632)
Q Consensus 241 ~~~~~L~~Lls~~~niryvaL~~l~~i~~~~p~~~~~ 277 (632)
.+.+.|.+.++-..++|-.--..|..++..+|.+..+
T Consensus 585 EIlg~LRRcL~Qqa~VR~~LY~gl~~~v~~n~~l~~~ 621 (1308)
T 3s51_A 585 EIIDSLKRSLGQQADIRLMLYDGFYDVLRRNSQLASS 621 (1308)
T ss_dssp HHHHHHHGGGGSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHcChhhHHH
No 161
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=23.73 E-value=4e+02 Score=26.68 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHHhhhhcccccc
Q 006763 93 DDPYVRKTAAICVAKLYDINAELVE 117 (632)
Q Consensus 93 ~~pyVRK~A~~al~kl~~~~p~~v~ 117 (632)
..+-+|..|+.-+.-+.+-+|..++
T Consensus 82 ~~~~~rE~aarII~ssLRNNP~Al~ 106 (315)
T 3qml_C 82 LPLTLRELSTRVITSCLRNNPPVVE 106 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CChhHHHHHHHHHHHHHccCHHHHH
Confidence 4445666666666666666666554
No 162
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=23.44 E-value=6.9e+02 Score=28.21 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=24.4
Q ss_pred chhHHHHHHHHHHHhcCcccHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 006763 289 PIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIG 336 (632)
Q Consensus 289 d~~Ik~~kL~lL~~L~n~~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg 336 (632)
|..+|...+-...+-.++ ++.+.++ |.++.+.+-++.++.++|
T Consensus 618 ~~~lr~~v~~~~~~~g~~--~~~l~~~---~~~~~~~~~~~~~l~al~ 660 (780)
T 1z5h_A 618 EPEMRSSIATAYALVTGD--LKGLLEK---FRSVDRDEDRVRIISAFG 660 (780)
T ss_dssp CHHHHHHHHHHHHHHTCC--HHHHHHH---HHSCCSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCcH--HHHHHHH---HhcCCCHHHHHHHHHHhc
Confidence 566777666665554444 4444333 444556666666666665
No 163
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=22.53 E-value=1.8e+02 Score=27.84 Aligned_cols=60 Identities=10% Similarity=0.190 Sum_probs=43.8
Q ss_pred HHhhhhcCHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHh
Q 006763 317 KEYATEVDVDFVRKAVRAIGRCAIKL----ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (632)
Q Consensus 317 ~~yl~~~d~~~~~~~i~aIg~la~k~----~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ilr 377 (632)
.+|+...+.+-+..++..+..++.+. ...+..|+.++-+++..+.+|+..| +..|..|+.
T Consensus 135 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Y~kvm~ki~~~g~~~~~~E-~~Rl~~~l~ 198 (240)
T 2qc7_A 135 GEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILDQGEDFPASE-MTRIARLIE 198 (240)
T ss_dssp HHHHHSCSHHHHHHHTTHHHHHTTCSCHHHHHHHHHHHHHHHHHHHSCTTSHHHH-HHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHh
Confidence 35777666666777777777665442 2567789999999998878898888 567777775
No 164
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=21.94 E-value=7.1e+02 Score=28.24 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=53.7
Q ss_pred HHHHHhcCc--ccHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHH
Q 006763 298 EIMIKLASD--RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIV 371 (632)
Q Consensus 298 ~lL~~L~n~--~Ni~~Iv~EL~~yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~ 371 (632)
.++.+++.. .|++.-+.+|...+.+..+..+...++.+-+|+...|.. .-++.+++.++..+...+..+++..
T Consensus 14 ~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~K-t~vyAaLVgllN~k~pe~G~~lv~~ 88 (771)
T 1h2v_C 14 SLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEK-LTIYTTLVGLLNARNYNFGGEFVEA 88 (771)
T ss_dssp HHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHcCChhHHHHHHHH
Confidence 456677753 556677777777776556678888889999999988876 4566888999988877666665543
No 165
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.78 E-value=2.2e+02 Score=26.77 Aligned_cols=51 Identities=12% Similarity=0.164 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhhccccccccchHHHHHHHhcCCChhHHHHHHHHHHHHHhcC
Q 006763 99 KTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (632)
Q Consensus 99 K~A~~al~kl~~~~p~~v~~~~~~~~L~~lL~D~d~~Vv~~Al~aL~eI~~~~ 151 (632)
-..++.+.-+.+..++... ..+..|.+-|..+||.|+.-|+.+|..+.++-
T Consensus 23 w~~~leicd~i~~~~~~~k--~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNc 73 (220)
T 1dvp_A 23 WPSILLICDEINQKDVTPK--NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNC 73 (220)
T ss_dssp HHHHHHHHHHHHTTSSCHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhcCCCcCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence 3456777777776666544 36677888889999999999999887776653
No 166
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=21.70 E-value=1e+02 Score=27.29 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=50.4
Q ss_pred HHHHHhcCcccHHHHHHHHHH--hhhhcCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Q 006763 298 EIMIKLASDRNIDQVLLEFKE--YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDI 375 (632)
Q Consensus 298 ~lL~~L~n~~Ni~~Iv~EL~~--yl~~~d~~~~~~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 375 (632)
.+.-+|. |++.+++.|++ +++..|.+.+ .+ ......-+..|+++...+|+...+..+..++++
T Consensus 35 ~LV~rl~---~v~~LLD~LL~~gvLs~EE~EiV----~~--------~~T~~dKaRrLLDlV~sKGe~a~e~Ll~~Lqql 99 (144)
T 4e9m_A 35 LLVTHIR---NTQCLVDNLLKNDYFSAEDAEIV----CA--------CPTQPDKVRKILDLVQSKGEEVSEFFLYLLQQL 99 (144)
T ss_dssp HHHHHCC---CCHHHHHHHHHTTSSCHHHHHHH----HT--------SSSHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHh---hhHHHHHHHHHcCCCCHHHHHHH----hc--------cCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3445555 36788888884 5665554433 11 123445678899999999999999889999988
Q ss_pred HhhCcccHH
Q 006763 376 FRRYPNTYE 384 (632)
Q Consensus 376 lr~~p~~~~ 384 (632)
-..|.+++.
T Consensus 100 ~day~dl~p 108 (144)
T 4e9m_A 100 ADAYVDLRP 108 (144)
T ss_dssp HHHSGGGHH
T ss_pred cccccchhH
Confidence 888887753
No 167
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=20.11 E-value=1.2e+02 Score=25.97 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhc
Q 006763 330 KAVRAIGRCAIKLERAAERCISVLLELIKIKV 361 (632)
Q Consensus 330 ~~i~aIg~la~k~~~~~~~~v~~Ll~ll~~~~ 361 (632)
.+|..+...+..+...++.+++++.+.+....
T Consensus 21 ~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~ 52 (135)
T 4fu3_A 21 QSVQTLSLWLIHHRKHAGPIVSVWHRELRKAK 52 (135)
T ss_dssp THHHHHHHHHHHTGGGHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445555555555556666666666555443
Done!