BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006764
(632 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate
Dehydrogenase And Its Ternary Complexes
Length = 330
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 16/105 (15%)
Query: 231 LIDVMESR--GIRQEIIAGSLTFYAKKYLPGLNRRQGDSSTRLAPVALGAPPSEEEQKLL 288
L+DVME + G ++ GSL + K + G + + ++L + GA E E +L
Sbjct: 51 LVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSVS-AGSKLVVITAGARQQEGESRLN 109
Query: 289 LEEIDKLLPVQKGLVSAKFLFGLLRTAMILKASPSCISKLEKRIG 333
L VQ+ + KF+ I+K SP C+ +L +G
Sbjct: 110 L--------VQRNVNIFKFII-----PNIVKHSPDCLKELHPELG 141
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 28 SDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAK 87
+D+V+ V F HK L++ SG + + ++ +INL D + F ++
Sbjct: 30 TDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR--NLSVINL-DPEINPEGFNILLD 86
Query: 88 FCYGVKLELTASNVVYLRCAAEHLEM 113
F Y +L L N++ + A +L+M
Sbjct: 87 FMYTSRLNLREGNIMAVMATAMYLQM 112
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 28 SDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKC---IINLLDIPGRAKTFEL 84
+D+V+ V F HK L++ SG + + + KC +IN LD + F +
Sbjct: 33 TDVVIVVSREQFRAHKTVLMACSGLFYSIFTD-----QLKCNLSVIN-LDPEINPEGFCI 86
Query: 85 VAKFCYGVKLELTASNVVYLRCAAEHLEM 113
+ F Y +L L N++ + A +L+M
Sbjct: 87 LLDFMYTSRLNLREGNIMAVMATAMYLQM 115
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
Query: 44 FPLLSRSGAMERLIAEASEKAEEKCIIN--LLDIPGRAK-TFELVAKFCYGVKLELTASN 100
PL++ S + E+ + +++ LD G K E + K Y K+ A
Sbjct: 281 LPLITESVFARYISTYKDERVKASKVLSGPALDFSGDKKEVIEKIRKALYFSKIMSYAQG 340
Query: 101 VVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNI 160
LR A+E + YG I + + L+N D+ +++L ++I
Sbjct: 341 FAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDI 400
Query: 161 TKRCIE------SLAVKAST 174
TKR E SLAV+A T
Sbjct: 401 TKRYQEAVRDVVSLAVQAGT 420
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
Query: 44 FPLLSRSGAMERLIAEASEKAEEKCIIN--LLDIPGRAK-TFELVAKFCYGVKLELTASN 100
PL++ S + E+ + +++ LD G K E + K Y K+ A
Sbjct: 280 LPLITESVFARYISTYKDERVKASKVLSGPALDFSGDKKEVIEKIRKALYFSKIMSYAQG 339
Query: 101 VVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNI 160
LR A+E + YG I + + L+N D+ +++L ++I
Sbjct: 340 FAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDI 399
Query: 161 TKRCIE------SLAVKAST 174
TKR E SLAV+A T
Sbjct: 400 TKRYQEAVRDVVSLAVQAGT 419
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
Query: 44 FPLLSRSGAMERLIAEASEKAEEKCIIN--LLDIPGRAK-TFELVAKFCYGVKLELTASN 100
PL++ S + E+ + +++ LD G K E + K Y K+ A
Sbjct: 279 LPLITESVFARYISTYKDERVKASKVLSGPALDFSGDKKEVIEKIRKALYFSKIMSYAQG 338
Query: 101 VVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNI 160
LR A+E + YG I + + L+N D+ +++L ++I
Sbjct: 339 FAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDI 398
Query: 161 TKRCIE------SLAVKAST 174
TKR E SLAV+A T
Sbjct: 399 TKRYQEAVRDVVSLAVQAGT 418
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 394 SLTPITMVAKLIDGYLAEVAPDVNLKL-PKFQKLAATVPDYARPLDDGLYRAIDIYLKSH 452
SL I+ +K++ G +N+K K L+ TV D A+ GL++AI+ Y+ +H
Sbjct: 93 SLEKISYESKILPGPDGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYVLAH 152
Query: 453 P 453
P
Sbjct: 153 P 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,256,645
Number of Sequences: 62578
Number of extensions: 746179
Number of successful extensions: 2077
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2072
Number of HSP's gapped (non-prelim): 16
length of query: 632
length of database: 14,973,337
effective HSP length: 105
effective length of query: 527
effective length of database: 8,402,647
effective search space: 4428194969
effective search space used: 4428194969
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)