Query 006764
Match_columns 632
No_of_seqs 309 out of 975
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 14:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 6.3E-88 1.4E-92 688.3 23.7 258 213-477 1-258 (258)
2 KOG4441 Proteins containing BT 99.9 2E-26 4.4E-31 260.7 16.6 230 17-332 26-260 (571)
3 PHA02713 hypothetical protein; 99.9 1.8E-25 3.8E-30 252.7 15.0 231 16-330 14-246 (557)
4 PHA02790 Kelch-like protein; P 99.9 5.5E-24 1.2E-28 236.5 12.6 175 20-255 15-195 (480)
5 PHA03098 kelch-like protein; P 99.9 3.4E-22 7.4E-27 223.7 15.9 220 24-332 6-236 (534)
6 PF00651 BTB: BTB/POZ domain; 99.7 1.3E-16 2.7E-21 141.3 8.0 104 21-133 4-110 (111)
7 smart00225 BTB Broad-Complex, 99.6 4.6E-15 9.9E-20 123.8 6.4 90 29-127 1-90 (90)
8 KOG2075 Topoisomerase TOP1-int 99.3 1.8E-11 4E-16 132.8 12.8 186 15-254 102-294 (521)
9 KOG4350 Uncharacterized conser 99.2 1.6E-10 3.4E-15 123.1 12.4 106 20-134 37-145 (620)
10 KOG4591 Uncharacterized conser 98.9 3E-09 6.6E-14 104.7 7.1 133 7-160 43-183 (280)
11 KOG4682 Uncharacterized conser 98.5 4.2E-07 9.1E-12 97.5 8.8 177 21-253 63-245 (488)
12 KOG0783 Uncharacterized conser 98.2 2.1E-06 4.6E-11 98.5 6.9 126 27-171 712-846 (1267)
13 KOG0783 Uncharacterized conser 98.2 3E-06 6.5E-11 97.3 6.9 67 25-93 556-633 (1267)
14 PF11822 DUF3342: Domain of un 97.7 2.6E-05 5.7E-10 82.6 4.6 94 30-134 1-104 (317)
15 smart00512 Skp1 Found in Skp1 97.0 0.0012 2.7E-08 59.1 5.3 81 30-113 4-104 (104)
16 PF02214 BTB_2: BTB/POZ domain 96.6 0.002 4.3E-08 56.3 3.7 83 30-115 1-88 (94)
17 KOG2716 Polymerase delta-inter 96.0 0.025 5.4E-07 58.1 8.1 96 30-134 7-105 (230)
18 KOG3473 RNA polymerase II tran 94.6 0.13 2.9E-06 46.0 7.2 75 35-112 25-111 (112)
19 KOG2838 Uncharacterized conser 94.3 0.023 5.1E-07 59.2 2.0 80 12-94 116-196 (401)
20 PF03931 Skp1_POZ: Skp1 family 94.1 0.13 2.9E-06 42.0 5.7 55 30-90 3-58 (62)
21 KOG1724 SCF ubiquitin ligase, 93.3 0.18 3.8E-06 49.4 6.1 92 35-136 13-129 (162)
22 KOG2838 Uncharacterized conser 89.7 0.25 5.4E-06 51.8 2.8 59 38-97 262-329 (401)
23 PF07707 BACK: BTB And C-termi 82.8 0.2 4.4E-06 43.5 -1.8 41 217-257 34-74 (103)
24 KOG0511 Ankyrin repeat protein 80.0 2.1 4.6E-05 46.9 4.4 77 36-115 300-379 (516)
25 KOG3840 Uncharaterized conserv 76.7 9.6 0.00021 40.9 7.8 112 22-136 90-222 (438)
26 KOG2714 SETA binding protein S 74.4 7.8 0.00017 43.3 6.8 83 30-115 13-99 (465)
27 PF01466 Skp1: Skp1 family, di 70.8 3.5 7.5E-05 35.2 2.5 35 95-135 10-44 (78)
28 PF04508 Pox_A_type_inc: Viral 68.2 6 0.00013 26.6 2.6 19 547-565 2-20 (23)
29 KOG0511 Ankyrin repeat protein 65.2 2 4.2E-05 47.2 -0.2 69 17-92 137-210 (516)
30 COG5201 SKP1 SCF ubiquitin lig 60.5 25 0.00054 33.5 6.1 94 30-135 4-123 (158)
31 KOG1665 AFH1-interacting prote 56.2 36 0.00078 35.3 7.0 90 30-128 11-105 (302)
32 smart00875 BACK BTB And C-term 55.9 10 0.00022 32.2 2.7 39 218-256 35-73 (101)
33 KOG1987 Speckle-type POZ prote 55.1 7.3 0.00016 40.8 2.0 90 36-134 109-201 (297)
34 PF08581 Tup_N: Tup N-terminal 53.5 20 0.00043 31.2 4.0 26 546-571 39-64 (79)
35 PF14363 AAA_assoc: Domain ass 50.9 9.2 0.0002 34.1 1.7 42 430-472 30-71 (98)
36 TIGR01834 PHA_synth_III_E poly 50.9 18 0.00039 39.2 4.1 30 545-574 288-317 (320)
37 KOG2715 Uncharacterized conser 50.8 43 0.00094 33.3 6.3 101 25-133 18-121 (210)
38 PF01166 TSC22: TSC-22/dip/bun 47.9 29 0.00063 28.5 3.8 32 538-569 13-44 (59)
39 PF14077 WD40_alt: Alternative 46.5 11 0.00024 29.5 1.2 20 548-567 13-32 (48)
40 KOG4571 Activating transcripti 45.6 23 0.0005 37.8 3.8 42 533-574 249-290 (294)
41 PF07989 Microtub_assoc: Micro 33.5 75 0.0016 27.3 4.4 38 533-570 37-74 (75)
42 PF10473 CENP-F_leu_zip: Leuci 32.6 79 0.0017 30.4 4.9 37 536-572 77-113 (140)
43 PF04977 DivIC: Septum formati 30.4 65 0.0014 26.7 3.6 52 538-591 16-68 (80)
44 PF13764 E3_UbLigase_R4: E3 ub 30.3 36 0.00077 41.4 2.6 75 345-455 252-335 (802)
45 KOG3713 Voltage-gated K+ chann 30.3 1.1E+02 0.0023 35.1 6.2 94 25-127 28-133 (477)
46 COG2433 Uncharacterized conser 28.9 80 0.0017 37.1 5.0 67 393-461 299-367 (652)
47 TIGR02894 DNA_bind_RsfA transc 28.2 1.1E+02 0.0024 30.1 5.1 33 538-570 103-135 (161)
48 COG3510 CmcI Cephalosporin hyd 27.3 46 0.001 34.0 2.4 34 428-461 184-219 (237)
49 PF10929 DUF2811: Protein of u 27.2 46 0.00099 27.3 1.9 19 439-457 8-26 (57)
50 PHA01750 hypothetical protein 24.5 1.4E+02 0.0029 25.4 4.2 34 538-571 41-74 (75)
51 PF00170 bZIP_1: bZIP transcri 23.8 1.9E+02 0.0041 23.5 5.1 22 548-569 28-49 (64)
52 PF12029 DUF3516: Domain of un 22.4 51 0.0011 37.3 1.9 42 417-459 197-238 (461)
53 PF08172 CASP_C: CASP C termin 22.3 88 0.0019 32.8 3.5 25 547-571 87-111 (248)
54 smart00338 BRLZ basic region l 20.9 1.8E+02 0.004 23.6 4.5 30 540-569 34-63 (65)
55 PF07716 bZIP_2: Basic region 20.6 2.7E+02 0.0059 21.9 5.2 30 543-572 22-51 (54)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=6.3e-88 Score=688.31 Aligned_cols=258 Identities=55% Similarity=0.907 Sum_probs=228.5
Q ss_pred CCccccccccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCCCcccCCCCCCCcCCcCCCCCCCHHHHHHHHHHH
Q 006764 213 SDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLPGLNRRQGDSSTRLAPVALGAPPSEEEQKLLLEEI 292 (632)
Q Consensus 213 ~dWW~EDl~~Lsldlf~rvI~am~~~g~~~e~I~~aL~~Yakk~lp~~~r~~~~~~~~~~~~~~~~~~~~~~qr~LLEtI 292 (632)
+||||||++.|++++|+|||.+|+++|+++++|+++|++||+||+|++++..... ............+||.+||+|
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~----~~~~~~~~~~~~~~r~llEti 76 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGS----SSSAESSTSSENEQRELLETI 76 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccc----cccccccchhHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999986542111 112223456778999999999
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhcccccccccccCCCCCCcccchhHHHHHHHHHHHhc
Q 006764 293 DKLLPVQKGLVSAKFLFGLLRTAMILKASPSCISKLEKRIGMQLDQATLEDLLMPNFSYSMETLYNVECVQRILDHFLAM 372 (632)
Q Consensus 293 v~lLP~~k~~vs~~fLf~LLR~A~~l~as~~cr~~LE~rIg~qLd~AtldDLLips~~~~~~tlyDvd~V~ril~~Fl~~ 372 (632)
|+|||.+++++||+|||+|||+|+++++|+.||.+||+|||.|||||||||||||+.+...+|+||||+|+|||++||.+
T Consensus 77 V~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~ 156 (258)
T PF03000_consen 77 VSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQ 156 (258)
T ss_pred HHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999333445999999999999999998
Q ss_pred ccccCCCCCCCCCCCccCCCCCchhHHHHHHhHhhhhhhhcCCCCCChhhHHHHHHhcCCCCCCCchhHHHHHHHHHHhC
Q 006764 373 DQITGGASPCSVDDGQLLGSPSLTPITMVAKLIDGYLAEVAPDVNLKLPKFQKLAATVPDYARPLDDGLYRAIDIYLKSH 452 (632)
Q Consensus 373 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEvA~D~nL~~~kF~~Lae~lP~~aR~~~DgLYrAIDiYLkaH 452 (632)
++..+.... ++....++++.+++.+||||||+||+|||+|+||+|+||++|||+||++||++|||||||||||||+|
T Consensus 157 ~~~~~~~~~---~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~H 233 (258)
T PF03000_consen 157 EEEAGEEEE---SESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAH 233 (258)
T ss_pred ccccccccc---cccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHc
Confidence 654321111 11112234678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHhHHhhhccccccCCCHHHh
Q 006764 453 PWLAESDREQLCRLMDCQKLSLEAC 477 (632)
Q Consensus 453 p~lse~Er~~lC~~ldcqKLS~EAc 477 (632)
|+||++||++||++|||||||+|||
T Consensus 234 p~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 234 PGLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred ccCCHHHHHHHHhhCCcccCCcccC
Confidence 9999999999999999999999999
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=2e-26 Score=260.68 Aligned_cols=230 Identities=24% Similarity=0.337 Sum_probs=191.0
Q ss_pred hhHHHhhcCCCeeEEEEECCeEEEeccccccccCHHHHHHhhcccccccccceEEeCCCCCCHHHHHHHHHHhcCCCccc
Q 006764 17 GQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLEL 96 (632)
Q Consensus 17 ~~~w~r~~g~~~DV~I~V~~~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~~~v~L~d~pgga~~felv~~FcYg~~i~i 96 (632)
+-.-+|.++.+|||+|.|++++|++||.||||+|+|||+||++++.| ..+.+|+|+++ .+++++++++|+||+++.|
T Consensus 26 ~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e-~~~~~i~l~~v--~~~~l~~ll~y~Yt~~i~i 102 (571)
T KOG4441|consen 26 GLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKE-SKQKEINLEGV--DPETLELLLDYAYTGKLEI 102 (571)
T ss_pred HHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCccc-ccceEEEEecC--CHHHHHHHHHHhhcceEEe
Confidence 44568999999999999999999999999999999999999998887 67889999998 5799999999999999999
Q ss_pred CcchHhHHHHhhcccccCcccCcccHHHHHHHHHHHhhhcchhhHHHH-----HhhhhhHHHHHHHhchhhHHHHHHHHH
Q 006764 97 TASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKA-----LQTCDDILPYAEELNITKRCIESLAVK 171 (632)
Q Consensus 97 t~~NV~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~v~~sw~d~i~~-----L~sC~~L~~~Ae~~~iv~rcidsLa~k 171 (632)
+.+||+.|+.||.+|||++ |++.|+.||.+++.+ .||+.+ +++|.+|...|+. +|.++|++.
T Consensus 103 ~~~nVq~ll~aA~~lQi~~------v~~~C~~fL~~~l~~--~Nclgi~~~a~~~~~~~L~~~a~~-~i~~~F~~v---- 169 (571)
T KOG4441|consen 103 SEDNVQELLEAASLLQIPE------VVDACCEFLESQLDP--SNCLGIRRFAELHSCTELLEVADE-YILQHFAEV---- 169 (571)
T ss_pred chHhHHHHHHHHHHhhhHH------HHHHHHHHHHhcCCH--HHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHHH----
Confidence 9999999999999999999 999999999999987 444432 2455555555553 233222221
Q ss_pred HcCCCCCCCCCcccCCCCCCCCCCCccccCcccCCCCCCCCCCccccccccCChHHHHHHHHHHHhcCCchHHHHHHHHH
Q 006764 172 ASTDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTF 251 (632)
Q Consensus 172 ac~d~~~~~~~~~~~~~~~~s~~~~~~~~~~~t~~~~~~~~~dWW~EDl~~Lsldlf~rvI~am~~~g~~~e~I~~aL~~ 251 (632)
|=.||+..|+.+.+..+|+......-+|+.++++++.
T Consensus 170 -------------------------------------------~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~ 206 (571)
T KOG4441|consen 170 -------------------------------------------SKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMR 206 (571)
T ss_pred -------------------------------------------hccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHH
Confidence 1157999999999999999999999999999999999
Q ss_pred HHHhhcCCCcccCCCCCCCcCCcCCCCCCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 006764 252 YAKKYLPGLNRRQGDSSTRLAPVALGAPPSEEEQKLLLEEIDKLLPVQKGLVSAKFLFGLLRTAMILKASPSCISKLEKR 331 (632)
Q Consensus 252 Yakk~lp~~~r~~~~~~~~~~~~~~~~~~~~~~qr~LLEtIv~lLP~~k~~vs~~fLf~LLR~A~~l~as~~cr~~LE~r 331 (632)
|+++..+. ...+-..|+++|.. | .++..||...+.....+..++.|+..|..=
T Consensus 207 Wv~~d~~~---------------------R~~~~~~ll~~vr~--~----ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea 259 (571)
T KOG4441|consen 207 WVKHDFEE---------------------REEHLPALLEAVRL--P----LLPPQFLVEIVESEPLIKRDSACRDLLDEA 259 (571)
T ss_pred HHhcCHhh---------------------HHHHHHHHHHhcCc--c----CCCHHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence 99764431 12345577777773 4 688999999999999999999999887653
Q ss_pred H
Q 006764 332 I 332 (632)
Q Consensus 332 I 332 (632)
.
T Consensus 260 ~ 260 (571)
T KOG4441|consen 260 K 260 (571)
T ss_pred H
Confidence 3
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.93 E-value=1.8e-25 Score=252.67 Aligned_cols=231 Identities=15% Similarity=0.182 Sum_probs=175.1
Q ss_pred hhhHHHhhcCCCeeEEEEEC-CeEEEeccccccccCHHHHHHhhcccccccccceEEeCCCCCCHHHHHHHHHHhcCCCc
Q 006764 16 QGQAWFCTSGLPSDIVVEVG-EMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKL 94 (632)
Q Consensus 16 ~~~~w~r~~g~~~DV~I~V~-~~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~~~v~L~d~pgga~~felv~~FcYg~~i 94 (632)
++-.-+|.++.+|||+|.|+ |++|++||.||||+|+||++||++++.|...+.+|+|+++ .+++|+.+++|+||++
T Consensus 14 ~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v--~~~~~~~ll~y~Yt~~- 90 (557)
T PHA02713 14 SNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMF--DKDAVKNIVQYLYNRH- 90 (557)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccC--CHHHHHHHHHHhcCCC-
Confidence 34445789999999999997 8999999999999999999999998775323678999999 5799999999999997
Q ss_pred ccCcchHhHHHHhhcccccCcccCcccHHHHHHHHHHHhhhcchhhHHHHHhhhhhHHHHHHHhchhhHHHHHHHHHHcC
Q 006764 95 ELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKAST 174 (632)
Q Consensus 95 ~it~~NV~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~v~~sw~d~i~~L~sC~~L~~~Ae~~~iv~rcidsLa~kac~ 174 (632)
|+.+||+.|+.||.+||++. |++.|++||.+.+.+ .||.++...++.++... ..+....-++.
T Consensus 91 -i~~~nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l~~---------~NCl~i~~~~~~~~~~~-L~~~a~~~i~~ 153 (557)
T PHA02713 91 -ISSMNVIDVLKCADYLLIDD------LVTDCESYIKDYTNH---------DTCIYMYHRLYEMSHIP-IVKYIKRMLMS 153 (557)
T ss_pred -CCHHHHHHHHHHHHHHCHHH------HHHHHHHHHHhhCCc---------cchHHHHHHHHhccchH-HHHHHHHHHHH
Confidence 79999999999999999999 999999999999976 35555555444443211 11221112233
Q ss_pred CCCCCCCCcccCCCCCCCCCCCccccCcccCCCCCCCCCCccccccccCChHHHHHHHHHHH-hcCCchHHHHHHHHHHH
Q 006764 175 DPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVME-SRGIRQEIIAGSLTFYA 253 (632)
Q Consensus 175 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~t~~~~~~~~~dWW~EDl~~Lsldlf~rvI~am~-~~g~~~e~I~~aL~~Ya 253 (632)
+...+ .. .|||..|+.+.+..+|+... ....+++.|.++++.|+
T Consensus 154 ~f~~v--------------------------------~~---~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~ 198 (557)
T PHA02713 154 NIPTL--------------------------------IT---TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWL 198 (557)
T ss_pred HHHHH--------------------------------hC---ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHH
Confidence 32111 00 47889999999999999977 46678999999999999
Q ss_pred HhhcCCCcccCCCCCCCcCCcCCCCCCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 006764 254 KKYLPGLNRRQGDSSTRLAPVALGAPPSEEEQKLLLEEIDKLLPVQKGLVSAKFLFGLLRTAMILKASPSCISKLEK 330 (632)
Q Consensus 254 kk~lp~~~r~~~~~~~~~~~~~~~~~~~~~~qr~LLEtIv~lLP~~k~~vs~~fLf~LLR~A~~l~as~~cr~~LE~ 330 (632)
++.... | .....||+.|.. | .++.++++ .+.....+..++.|+..|+.
T Consensus 199 ~~d~~~--r--------------------~~~~~ll~~VR~--~----~l~~~~~~-~~~~~~~i~~~~~c~~~l~~ 246 (557)
T PHA02713 199 EYNYIT--E--------------------EQLLCILSCIDI--Q----NLDKKSRL-LLYSNKTINMYPSCIQFLLD 246 (557)
T ss_pred hcCHHH--H--------------------HHHhhhHhhhhH--h----hcchhhhh-hhcchHHHHhhHHHHHHHhh
Confidence 764221 1 223468888873 3 35556766 55566777889999988765
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.90 E-value=5.5e-24 Score=236.51 Aligned_cols=175 Identities=13% Similarity=0.112 Sum_probs=140.3
Q ss_pred HHhhcCCCeeEEEEECCeEEEeccccccccCHHHHHHhhcccccccccceEEe--CCCCCCHHHHHHHHHHhcCCCcccC
Q 006764 20 WFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINL--LDIPGRAKTFELVAKFCYGVKLELT 97 (632)
Q Consensus 20 w~r~~g~~~DV~I~V~~~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~~~v~L--~d~pgga~~felv~~FcYg~~i~it 97 (632)
-+|.+|.+|||++.+ |.+|+|||.||||+|+|||+||++++.| +. .+|.+ .++ .+++|+.+++|+|||+|.||
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~E-s~-~~v~~~~~~v--~~~~l~~lldy~YTg~l~it 89 (480)
T PHA02790 15 ALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTK-NK-DPVTRVCLDL--DIHSLTSIVIYSYTGKVYID 89 (480)
T ss_pred HHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCccc-cc-cceEEEecCc--CHHHHHHHHHhheeeeEEEe
Confidence 368899999987755 5699999999999999999999998887 33 34555 377 57999999999999999999
Q ss_pred cchHhHHHHhhcccccCcccCcccHHHHHHHHHHHhhhcchhhHHHHHhhhhhHHHHHHHhchhhHHHHHHHHHH----c
Q 006764 98 ASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKA----S 173 (632)
Q Consensus 98 ~~NV~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~v~~sw~d~i~~L~sC~~L~~~Ae~~~iv~rcidsLa~ka----c 173 (632)
.+||+.|+.||.+|||++ |++.|++||.+.+.++ ||.++..+|+.+++ ..|..+| +
T Consensus 90 ~~nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l~~~---------NCl~i~~~A~~y~~-----~~L~~~a~~fi~ 149 (480)
T PHA02790 90 SHNVVNLLRASILTSVEF------IIYTCINFILRDFRKE---------YCVECYMMGIEYGL-----SNLLCHTKDFIA 149 (480)
T ss_pred cccHHHHHHHHHHhChHH------HHHHHHHHHHhhCCcc---------hHHHHHHHHHHhCH-----HHHHHHHHHHHH
Confidence 999999999999999999 9999999999999773 77777777777655 2333332 3
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCccccCcccCCCCCCCCCCccccccccCChHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006764 174 TDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYA 253 (632)
Q Consensus 174 ~d~~~~~~~~~~~~~~~~s~~~~~~~~~~~t~~~~~~~~~dWW~EDl~~Lsldlf~rvI~am~~~g~~~e~I~~aL~~Ya 253 (632)
.+...+ .. .=+|||..|++ ..+|++.....-+++.|+++++.|+
T Consensus 150 ~nF~~v--------------------------------~~-~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl 193 (480)
T PHA02790 150 KHFLEL--------------------------------ED-DIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWY 193 (480)
T ss_pred HhHHHH--------------------------------hc-ccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHH
Confidence 332211 00 00368888886 5789888888899999999999999
Q ss_pred Hh
Q 006764 254 KK 255 (632)
Q Consensus 254 kk 255 (632)
++
T Consensus 194 ~~ 195 (480)
T PHA02790 194 MK 195 (480)
T ss_pred Hh
Confidence 74
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.88 E-value=3.4e-22 Score=223.69 Aligned_cols=220 Identities=17% Similarity=0.166 Sum_probs=172.5
Q ss_pred cCCCeeEEEEE--CCeEEEeccccccccCHHHHHHhhcccccccccceEEeCCCCCCHHHHHHHHHHhcCCCcccCcchH
Q 006764 24 SGLPSDIVVEV--GEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTASNV 101 (632)
Q Consensus 24 ~g~~~DV~I~V--~~~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~~~v~L~d~pgga~~felv~~FcYg~~i~it~~NV 101 (632)
++.+|||+|.| +|++|++||.+|+++|+||++||++++. +.+|+|++ .+++|+.+++|+|+|++.|+.+||
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~----~~~i~l~~---~~~~~~~~l~y~Ytg~~~i~~~~~ 78 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK----ENEINLNI---DYDSFNEVIKYIYTGKINITSNNV 78 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC----CceEEecC---CHHHHHHHHHHhcCCceEEcHHHH
Confidence 78899999998 9999999999999999999999998765 35788887 469999999999999999999999
Q ss_pred hHHHHhhcccccCcccCcccHHHHHHHHHHHhhhcchhhHHHHHhhhhhHHHHHHHhch---hhHHHHHHHHHHcCCCCC
Q 006764 102 VYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNI---TKRCIESLAVKASTDPNL 178 (632)
Q Consensus 102 ~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~v~~sw~d~i~~L~sC~~L~~~Ae~~~i---v~rcidsLa~kac~d~~~ 178 (632)
..|+.||.+|||++ |+..|++||.+.+.. .||..++.+|+.+++ .+.|.+-|+.. ...
T Consensus 79 ~~ll~~A~~l~~~~------l~~~C~~~l~~~l~~---------~nc~~~~~~a~~~~~~~L~~~~~~~i~~n----f~~ 139 (534)
T PHA03098 79 KDILSIANYLIIDF------LINLCINYIIKIIDD---------NNCIDIYRFSFFYGCKKLYSAAYNYIRNN----IEL 139 (534)
T ss_pred HHHHHHHHHhCcHH------HHHHHHHHHHHhCCH---------hHHHHHHHHHHHcCcHHHHHHHHHHHHHH----HHH
Confidence 99999999999999 999999999998854 578888888887753 22333333222 110
Q ss_pred CCCCcccCCCCCCCCCCCccccCcccCCCCCCCCCCccccccccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcC
Q 006764 179 FGWPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLP 258 (632)
Q Consensus 179 ~~~~~~~~~~~~~s~~~~~~~~~~~t~~~~~~~~~dWW~EDl~~Lsldlf~rvI~am~~~g~~~e~I~~aL~~Yakk~lp 258 (632)
+ .. .+||..|+.+.+..+|++.....-+|+.|.++++.|+++...
T Consensus 140 v--------------------------------~~---~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~ 184 (534)
T PHA03098 140 I--------------------------------YN---DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKN 184 (534)
T ss_pred H--------------------------------hc---CchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChh
Confidence 0 00 468999999999999999988888999999999999975321
Q ss_pred CCcccCCCCCCCcCCcCCCCCCCHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH------HHHhcCCCHHHHHHHHHHH
Q 006764 259 GLNRRQGDSSTRLAPVALGAPPSEEEQKLLLEEIDKLLPVQKGLVSAKFLFGLLR------TAMILKASPSCISKLEKRI 332 (632)
Q Consensus 259 ~~~r~~~~~~~~~~~~~~~~~~~~~~qr~LLEtIv~lLP~~k~~vs~~fLf~LLR------~A~~l~as~~cr~~LE~rI 332 (632)
. ...+-..|++.|+. ..++..+|..+.+ ....+ .+..|+..++...
T Consensus 185 ~---------------------r~~~~~~ll~~vR~------~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 236 (534)
T PHA03098 185 N---------------------KYKDICLILKVLRI------TFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKK 236 (534)
T ss_pred h---------------------hHhHHHHHHhhccc------cccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHH
Confidence 1 12334578888874 3677788888775 22333 6777887765443
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.67 E-value=1.3e-16 Score=141.29 Aligned_cols=104 Identities=28% Similarity=0.378 Sum_probs=91.2
Q ss_pred HhhcCCCeeEEEEEC-CeEEEeccccccccCHHHHHHhhcc-cccccccceEEeCCCCCCHHHHHHHHHHhcCCCcccC-
Q 006764 21 FCTSGLPSDIVVEVG-EMSFHLHKFPLLSRSGAMERLIAEA-SEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELT- 97 (632)
Q Consensus 21 ~r~~g~~~DV~I~V~-~~~F~lHK~vLas~S~yfr~Lf~~~-~~e~~~~~~v~L~d~pgga~~felv~~FcYg~~i~it- 97 (632)
++.++.+||++|.|+ +.+|++||.+|+++|+||++||... ..+ ....+|.+++++ +++|+.+++|+|++.+.++
T Consensus 4 ~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 4 LFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKE-STVPEISLPDVS--PEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTT-SSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-
T ss_pred HHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccc-cccccccccccc--ccccccccccccCCcccCCH
Confidence 467889999999999 8999999999999999999999987 333 334578899995 7999999999999999998
Q ss_pred cchHhHHHHhhcccccCcccCcccHHHHHHHHHHHh
Q 006764 98 ASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQV 133 (632)
Q Consensus 98 ~~NV~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~ 133 (632)
.+|+..++..|.+|+|++ |...|++||.+.
T Consensus 81 ~~~~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 999999999999999998 999999999874
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.56 E-value=4.6e-15 Score=123.85 Aligned_cols=90 Identities=29% Similarity=0.364 Sum_probs=81.3
Q ss_pred eEEEEECCeEEEeccccccccCHHHHHHhhcccccccccceEEeCCCCCCHHHHHHHHHHhcCCCcccCcchHhHHHHhh
Q 006764 29 DIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTASNVVYLRCAA 108 (632)
Q Consensus 29 DV~I~V~~~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~~~v~L~d~pgga~~felv~~FcYg~~i~it~~NV~~L~cAA 108 (632)
||+|.|||..|++||.+|+++|+||++||.+...+ .....+.++++ .+++|+.+++|+|++++.++..|+..++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~-~~~~~i~l~~~--~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKE-SKKSEIYLDDV--SPEDFRALLEFLYTGKLDLPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCcc-CCCCEEEecCC--CHHHHHHHHHeecCceeecCHHHHHHHHHHH
Confidence 78999999999999999999999999999876543 24568888887 5799999999999999999999999999999
Q ss_pred cccccCcccCcccHHHHHH
Q 006764 109 EHLEMTEEYGDGNLITQTE 127 (632)
Q Consensus 109 ~~LqM~e~~~~~NL~~~ce 127 (632)
.+++|++ |+..|+
T Consensus 78 ~~~~~~~------l~~~c~ 90 (90)
T smart00225 78 DYLQIPG------LVELCE 90 (90)
T ss_pred HHHCcHH------HHhhhC
Confidence 9999998 888874
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.29 E-value=1.8e-11 Score=132.75 Aligned_cols=186 Identities=19% Similarity=0.260 Sum_probs=149.5
Q ss_pred HhhhHHHhhcCCCeeEEEEECC-----eEEEeccccccccCHHHHHHhhcccccccccceEEeCCCCCCHHHHHHHHHHh
Q 006764 15 RQGQAWFCTSGLPSDIVVEVGE-----MSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFC 89 (632)
Q Consensus 15 ~~~~~w~r~~g~~~DV~I~V~~-----~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~~~v~L~d~pgga~~felv~~Fc 89 (632)
++.++-+..+...+||.+.||+ +.||+||++|+..|.-|.+||..+..+ ....+|.++|+ .+.+|...++|+
T Consensus 102 ~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~-~~s~ei~lpdv--epaaFl~~L~fl 178 (521)
T KOG2075|consen 102 RERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAE-DASLEIRLPDV--EPAAFLAFLRFL 178 (521)
T ss_pred HHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCccc-ccCceeecCCc--ChhHhHHHHHHH
Confidence 4445556688999999999973 799999999999999999999987765 24579999999 579999999999
Q ss_pred cCCCcccCcchHhHHHHhhcccccCcccCcccHHHHHHHHHHHhhhcchhhHHHHHhhhhhHHHHHHHhchhhHHHHHHH
Q 006764 90 YGVKLELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLA 169 (632)
Q Consensus 90 Yg~~i~it~~NV~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~v~~sw~d~i~~L~sC~~L~~~Ae~~~iv~rcidsLa 169 (632)
|+-.+.+.++||..++.||.-.-.+. |...|.+||+..+.+ .+.+.-|-+|..+ .++-.++++|++.|.
T Consensus 179 Ysdev~~~~dtvi~tl~~AkKY~Vpa------Ler~CVkflr~~l~~--~naf~~L~q~A~l---f~ep~Li~~c~e~id 247 (521)
T KOG2075|consen 179 YSDEVKLAADTVITTLYAAKKYLVPA------LERQCVKFLRKNLMA--DNAFLELFQRAKL---FDEPSLISICLEVID 247 (521)
T ss_pred hcchhhhhHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHhcCC--hHHHHHHHHHHHh---hcCHHHHHHHHHHhh
Confidence 99999999999999999997766776 999999999999877 6777777777444 444568899999887
Q ss_pred HHH--cCCCCCCCCCcccCCCCCCCCCCCccccCcccCCCCCCCCCCccccccccCChHHHHHHHHHHHhcCCchHHHHH
Q 006764 170 VKA--STDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAG 247 (632)
Q Consensus 170 ~ka--c~d~~~~~~~~~~~~~~~~s~~~~~~~~~~~t~~~~~~~~~dWW~EDl~~Lsldlf~rvI~am~~~g~~~e~I~~ 247 (632)
... |.++ =||-|+-.+ .+.|..|+..... .+++-.+++
T Consensus 248 ~~~~~al~~--------------------------------------EGf~did~~-~dt~~evl~r~~l-~~~e~~lfe 287 (521)
T KOG2075|consen 248 KSFEDALTP--------------------------------------EGFCDIDST-RDTYEEVLRRDTL-EAREFRLFE 287 (521)
T ss_pred hHHHhhhCc--------------------------------------cceeehhhH-HHHHHHHHhhccc-chhHHHHHH
Confidence 553 1111 146666555 8888888876543 356888999
Q ss_pred HHHHHHH
Q 006764 248 SLTFYAK 254 (632)
Q Consensus 248 aL~~Yak 254 (632)
++..|+.
T Consensus 288 A~lkw~~ 294 (521)
T KOG2075|consen 288 AALKWAE 294 (521)
T ss_pred HHHhhcc
Confidence 9999986
No 9
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.18 E-value=1.6e-10 Score=123.14 Aligned_cols=106 Identities=20% Similarity=0.315 Sum_probs=89.8
Q ss_pred HHhhcCCCeeEEEEECCeEEEeccccccccCHHHHHHhhcccccccccceEEeCCCCCCHHHHHHHHHHhcCCCcccCcc
Q 006764 20 WFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTAS 99 (632)
Q Consensus 20 w~r~~g~~~DV~I~V~~~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~~~v~L~d~pgga~~felv~~FcYg~~i~it~~ 99 (632)
.++.....+||++.|++..|++||.+||++|.|||+|+-.++.| +.+..|.|++- .+++|..+++|+|+|++.++..
T Consensus 37 ~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~E-s~q~~ipLq~t--~~eAF~~lLrYiYtg~~~l~~~ 113 (620)
T KOG4350|consen 37 ELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQE-SHQQLIPLQET--NSEAFRALLRYIYTGKIDLAGV 113 (620)
T ss_pred HHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhh-hhhcccccccc--cHHHHHHHHHHHhhcceecccc
Confidence 57788889999999999999999999999999999999998887 56778888865 5799999999999999998764
Q ss_pred h---HhHHHHhhcccccCcccCcccHHHHHHHHHHHhh
Q 006764 100 N---VVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVV 134 (632)
Q Consensus 100 N---V~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~v 134 (632)
. ....+.-|...++.+ |-.....||.+.+
T Consensus 114 ~ed~lld~LslAh~Ygf~~------Le~aiSeYl~~iL 145 (620)
T KOG4350|consen 114 EEDILLDYLSLAHRYGFIQ------LETAISEYLKEIL 145 (620)
T ss_pred hHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHH
Confidence 3 344555565556666 9999999999976
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.88 E-value=3e-09 Score=104.65 Aligned_cols=133 Identities=21% Similarity=0.290 Sum_probs=107.7
Q ss_pred CCCChhHHHhhh---HHHhhcCCCeeEEEEEC---CeEEEeccccccccCHHHHHHhhcccccccccceEEeCCCCCCHH
Q 006764 7 GSKTDAFQRQGQ---AWFCTSGLPSDIVVEVG---EMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAK 80 (632)
Q Consensus 7 ~sk~~~~~~~~~---~w~r~~g~~~DV~I~V~---~~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~~~v~L~d~pgga~ 80 (632)
.|.||+|..+-. +-+.....++||++.++ +..+++||+|||++|++.+ |.++.+| ......+.|. .++
T Consensus 43 eSs~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de--kse~~~~dDa--d~E 116 (280)
T KOG4591|consen 43 ESSPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE--KSEELDLDDA--DFE 116 (280)
T ss_pred cCCchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc--chhhhccccc--CHH
Confidence 467999988742 34567888999999998 6789999999999999875 4555544 2345667777 579
Q ss_pred HHHHHHHHhcCCCcccCcchHhH--HHHhhcccccCcccCcccHHHHHHHHHHHhhhcchhhHHHHHhhhhhHHHHHHHh
Q 006764 81 TFELVAKFCYGVKLELTASNVVY--LRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEEL 158 (632)
Q Consensus 81 ~felv~~FcYg~~i~it~~NV~~--L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~v~~sw~d~i~~L~sC~~L~~~Ae~~ 158 (632)
+|..+++++||-.|++..+.+.. |...|.-+|..- |.++|+.=+...++ ..||..+..+||++
T Consensus 117 a~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l~---------V~NCIk~Ye~AEe~ 181 (280)
T KOG4591|consen 117 AFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLEL------LKERCEKGLGALLH---------VDNCIKFYEFAEEL 181 (280)
T ss_pred HHHHhheeeeccccccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHhh---------HhhHHHHHHHHHHh
Confidence 99999999999999998877654 788899999987 99999988887664 46899999999987
Q ss_pred ch
Q 006764 159 NI 160 (632)
Q Consensus 159 ~i 160 (632)
..
T Consensus 182 n~ 183 (280)
T KOG4591|consen 182 NA 183 (280)
T ss_pred hH
Confidence 53
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.47 E-value=4.2e-07 Score=97.55 Aligned_cols=177 Identities=18% Similarity=0.195 Sum_probs=130.1
Q ss_pred HhhcCCCeeEEEEECCeEEEeccccccccCHHHHHHhhcccccccccc--eEEeCCCCCCHHHHHHHHHHhcCCCcccCc
Q 006764 21 FCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKC--IINLLDIPGRAKTFELVAKFCYGVKLELTA 98 (632)
Q Consensus 21 ~r~~g~~~DV~I~V~~~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~~--~v~L~d~pgga~~felv~~FcYg~~i~it~ 98 (632)
+..+|.-+||+|.+-|.+-++||.-| ..|+||..||...-.| +... .++|+|=.-+..+|..++.=.|...|+|..
T Consensus 63 lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~e-s~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l 140 (488)
T KOG4682|consen 63 LFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKE-SSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKL 140 (488)
T ss_pred HHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccCh-hhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccH
Confidence 34578899999999999999999877 6799999999875444 3333 455555444779999999999999999999
Q ss_pred chHhHHHHhhcccccCcccCcccHHHHHHHHHHHhhhcchhhHHHHHhhhhhHHHHHHHhchh---hHHHHHHHHHHcCC
Q 006764 99 SNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNIT---KRCIESLAVKASTD 175 (632)
Q Consensus 99 ~NV~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~v~~sw~d~i~~L~sC~~L~~~Ae~~~iv---~rcidsLa~kac~d 175 (632)
+.|..+++||.+||++. |+++|.+-+.+.+.+ ++--+....+..||+. ..|.+-|-...
T Consensus 141 ~dv~gvlAaA~~lqldg------l~qrC~evMie~lsp---------kta~~yYea~ckYgle~vk~kc~ewl~~nl--- 202 (488)
T KOG4682|consen 141 SDVVGVLAAACLLQLDG------LIQRCGEVMIETLSP---------KTACGYYEAACKYGLESVKKKCLEWLLNNL--- 202 (488)
T ss_pred HHHHHHHHHHHHHHHhh------HHHHHHHHHHHhcCh---------hhhhHhhhhhhhhhhHHHHHHHHHHHHHhh---
Confidence 99999999999999998 999999999999876 3555666777777653 23333333221
Q ss_pred CCCCCCCcccCCCCCCCCCCCccccCcccCCCCCCCCCCccccccccCChHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Q 006764 176 PNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVMESRGIR-QEIIAGSLTFYA 253 (632)
Q Consensus 176 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~t~~~~~~~~~dWW~EDl~~Lsldlf~rvI~am~~~g~~-~e~I~~aL~~Ya 253 (632)
|++.. ..-|-.++++++..|+.+-..-.|. +=.+...+..|.
T Consensus 203 -----~~i~~-------------------------------~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wm 245 (488)
T KOG4682|consen 203 -----MTIQN-------------------------------VQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWM 245 (488)
T ss_pred -----Hhhhh-------------------------------HHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHH
Confidence 11100 1135567788888888777666665 335566665554
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.20 E-value=2.1e-06 Score=98.46 Aligned_cols=126 Identities=20% Similarity=0.240 Sum_probs=96.9
Q ss_pred CeeEEEEECCeEEEeccccccccCHHHHHHhhcccccccccceEEeCCCCCCHHHHHHHHHHhc-CCCccc-----Ccch
Q 006764 27 PSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCY-GVKLEL-----TASN 100 (632)
Q Consensus 27 ~~DV~I~V~~~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~~~v~L~d~pgga~~felv~~FcY-g~~i~i-----t~~N 100 (632)
.|||++. +|+.|+|||.+|++++.||..||...-.| . ..|.....|-.++.++.|++|.| +-+..+ ..+=
T Consensus 712 d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E-~--sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 712 DTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWME-S--SSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred eEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhh-h--ccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 3444444 89999999999999999999999875433 2 34666667767899999999999 444433 1223
Q ss_pred HhHHHHhhcccccCcccCcccHHHHHHHHHHHhhhcchhhHHHHHhhhhhHHHHHHHhc---hhhHHHHHHHHH
Q 006764 101 VVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELN---ITKRCIESLAVK 171 (632)
Q Consensus 101 V~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~v~~sw~d~i~~L~sC~~L~~~Ae~~~---iv~rcidsLa~k 171 (632)
+..++..|+.|=+++ |.+.||.-|.+.+ .|++|..|+.+|..|+ +-.+|+|-|-..
T Consensus 788 ~~~il~iaDqlli~~------Lk~Ice~~ll~kl---------~lk~~~~llefaamY~ak~L~~~C~dfic~N 846 (1267)
T KOG0783|consen 788 MFEILSIADQLLILE------LKSICEQSLLRKL---------NLKTLPTLLEFAAMYHAKELYSRCIDFICHN 846 (1267)
T ss_pred hHHHHHHHHHHHHHH------HHHHHHHHHHhHh---------cccchHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 556788888888888 9999999998887 5889999999988774 667888875443
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.16 E-value=3e-06 Score=97.29 Aligned_cols=67 Identities=28% Similarity=0.473 Sum_probs=55.5
Q ss_pred CCCeeEEEEECCeEEEeccccccccCHHHHHHhhccccc-----------ccccceEEeCCCCCCHHHHHHHHHHhcCCC
Q 006764 25 GLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEK-----------AEEKCIINLLDIPGRAKTFELVAKFCYGVK 93 (632)
Q Consensus 25 g~~~DV~I~V~~~~F~lHK~vLas~S~yfr~Lf~~~~~e-----------~~~~~~v~L~d~pgga~~felv~~FcYg~~ 93 (632)
+-..|||+.||+.-|++||++|+++|++||+||....+. ....++|.++++|| .+||+++.|+|+..
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p--~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPP--LMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCH--HHHHHHHHHHhccc
Confidence 446799999999999999999999999999999764321 12235677889985 99999999999875
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.74 E-value=2.6e-05 Score=82.62 Aligned_cols=94 Identities=23% Similarity=0.358 Sum_probs=77.5
Q ss_pred EEEEE-C-----CeEEEeccccccccCHHHHHHhhc---ccccccccceEEeC-CCCCCHHHHHHHHHHhcCCCcccCcc
Q 006764 30 IVVEV-G-----EMSFHLHKFPLLSRSGAMERLIAE---ASEKAEEKCIINLL-DIPGRAKTFELVAKFCYGVKLELTAS 99 (632)
Q Consensus 30 V~I~V-~-----~~~F~lHK~vLas~S~yfr~Lf~~---~~~e~~~~~~v~L~-d~pgga~~felv~~FcYg~~i~it~~ 99 (632)
|+|+| | .+.|.|.+.+|.+.=+||+..+.. ...+ .....|..+ |+ .+|+-+++|+++....||+.
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~-~~~idisVhCDv----~iF~WLm~yv~~~~p~l~~~ 75 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQR-WEEIDISVHCDV----HIFEWLMRYVKGEPPSLTPS 75 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCc-CCCcceEEecCh----hHHHHHHHHhhcCCCcCCcC
Confidence 46666 2 367999999999999999999954 2211 122344444 66 79999999999999999999
Q ss_pred hHhHHHHhhcccccCcccCcccHHHHHHHHHHHhh
Q 006764 100 NVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVV 134 (632)
Q Consensus 100 NV~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~v 134 (632)
||+.|+-.++||||++ |++.|-.|+...+
T Consensus 76 NvvsIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 76 NVVSILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred cEEEeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 9999999999999999 9999999998876
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.97 E-value=0.0012 Score=59.08 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=61.7
Q ss_pred EEEEE-CCeEEEeccccccccCHHHHHHhhcccccccccceEEeCCCCCCHHHHHHHHHHhcCCC---------------
Q 006764 30 IVVEV-GEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVK--------------- 93 (632)
Q Consensus 30 V~I~V-~~~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~~~v~L~d~pgga~~felv~~FcYg~~--------------- 93 (632)
|+|+- +|+.|.+.+.+. ..|+-++.|+.+..........|.|++++| .+++.|++||+--+
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~--~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTS--KILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCH--HHHHHHHHHHHHcccCCCCccccccccHH
Confidence 56655 899999999865 689999999986432211224799999974 99999999998221
Q ss_pred ----cccCcchHhHHHHhhccccc
Q 006764 94 ----LELTASNVVYLRCAAEHLEM 113 (632)
Q Consensus 94 ----i~it~~NV~~L~cAA~~LqM 113 (632)
+.+..+++..|+.||.||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11666789999999999985
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.60 E-value=0.002 Score=56.26 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=60.9
Q ss_pred EEEEECCeEEEecccccc-ccCHHHHHHhhcc--cccccccceEEeCCCCCCHHHHHHHHHHhcC-CCcccC-cchHhHH
Q 006764 30 IVVEVGEMSFHLHKFPLL-SRSGAMERLIAEA--SEKAEEKCIINLLDIPGRAKTFELVAKFCYG-VKLELT-ASNVVYL 104 (632)
Q Consensus 30 V~I~V~~~~F~lHK~vLa-s~S~yfr~Lf~~~--~~e~~~~~~v~L~d~pgga~~felv~~FcYg-~~i~it-~~NV~~L 104 (632)
|+|.|||+.|.+-+..|. -...+|.+|+... .........+-|. = .|+.|+.|++|.-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD-R--dp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID-R--DPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES-S---HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec-c--ChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 5578999999853 1111233456553 2 57999999999998 777764 6678889
Q ss_pred HHhhcccccCc
Q 006764 105 RCAAEHLEMTE 115 (632)
Q Consensus 105 ~cAA~~LqM~e 115 (632)
+..|+|.++.+
T Consensus 78 ~~Ea~fy~l~~ 88 (94)
T PF02214_consen 78 LEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHT-HH
T ss_pred HHHHHHcCCCc
Confidence 99999999987
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.025 Score=58.05 Aligned_cols=96 Identities=17% Similarity=0.260 Sum_probs=76.1
Q ss_pred EEEEECCeEEEeccccccccCHHHHHHhhcccc-cccccceEEeCCCCCCHHHHHHHHHHhcCCCccc--CcchHhHHHH
Q 006764 30 IVVEVGEMSFHLHKFPLLSRSGAMERLIAEASE-KAEEKCIINLLDIPGRAKTFELVAKFCYGVKLEL--TASNVVYLRC 106 (632)
Q Consensus 30 V~I~V~~~~F~lHK~vLas~S~yfr~Lf~~~~~-e~~~~~~v~L~d~pgga~~felv~~FcYg~~i~i--t~~NV~~L~c 106 (632)
|.+.|||..|...|.-|.-..|||+.|+..... +......|-|.- .|.=|++|++|+=.|.+.| +..++..|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDR---SpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDR---SPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecC---ChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 458899999999999999999999999987532 101122344432 5699999999999777665 5567779999
Q ss_pred hhcccccCcccCcccHHHHHHHHHHHhh
Q 006764 107 AAEHLEMTEEYGDGNLITQTETFLNQVV 134 (632)
Q Consensus 107 AA~~LqM~e~~~~~NL~~~ce~FL~~~v 134 (632)
=|+|..+++ |++.|..=+....
T Consensus 84 EA~fYlL~~------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 84 EAEFYLLDG------LVELCQSAIARLI 105 (230)
T ss_pred HHHHhhHHH------HHHHHHHHhhhcc
Confidence 999999999 9999998777653
No 18
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=94.62 E-value=0.13 Score=46.01 Aligned_cols=75 Identities=21% Similarity=0.328 Sum_probs=58.7
Q ss_pred CCeEEEeccccccccCHHHHHHhhccc-ccccccceEEeCCCCCCHHHHHHHHHHh-----cCCC------cccCcchHh
Q 006764 35 GEMSFHLHKFPLLSRSGAMERLIAEAS-EKAEEKCIINLLDIPGRAKTFELVAKFC-----YGVK------LELTASNVV 102 (632)
Q Consensus 35 ~~~~F~lHK~vLas~S~yfr~Lf~~~~-~e~~~~~~v~L~d~pgga~~felv~~Fc-----Yg~~------i~it~~NV~ 102 (632)
+|++|-+-|. +|--|+-+|+|+.... ..++...+|.+.+|| +..++.+..|. |+.. ++|-|+=+.
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 7899988665 6778999999998532 211345689999997 59999998875 4332 678889999
Q ss_pred HHHHhhcccc
Q 006764 103 YLRCAAEHLE 112 (632)
Q Consensus 103 ~L~cAA~~Lq 112 (632)
.|+.||+||+
T Consensus 102 eLL~aAn~Le 111 (112)
T KOG3473|consen 102 ELLMAANYLE 111 (112)
T ss_pred HHHHHhhhhc
Confidence 9999999996
No 19
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.29 E-value=0.023 Score=59.20 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=60.3
Q ss_pred hHHHhhhHHHhhcCCCeeEEEEECCeEEEeccccccccCHHHHHHhhcccccc-cccceEEeCCCCCCHHHHHHHHHHhc
Q 006764 12 AFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKA-EEKCIINLLDIPGRAKTFELVAKFCY 90 (632)
Q Consensus 12 ~~~~~~~~w~r~~g~~~DV~I~V~~~~F~lHK~vLas~S~yfr~Lf~~~~~e~-~~~~~v~L~d~pgga~~felv~~FcY 90 (632)
+|+++-..- .......||-|......|++||+.|+++|++|+-+.....+.+ ...+.++.-+|. -++|+..+.+.|
T Consensus 116 sf~kD~ad~-ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~l~ 192 (401)
T KOG2838|consen 116 SFLKDFADG-YERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHSLI 192 (401)
T ss_pred HHHHHHhhh-hheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHHHH
Confidence 466654433 3456778999999999999999999999999999886543321 122456666774 589999999999
Q ss_pred CCCc
Q 006764 91 GVKL 94 (632)
Q Consensus 91 g~~i 94 (632)
++..
T Consensus 193 tgEf 196 (401)
T KOG2838|consen 193 TGEF 196 (401)
T ss_pred hccc
Confidence 9875
No 20
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.10 E-value=0.13 Score=41.96 Aligned_cols=55 Identities=11% Similarity=0.320 Sum_probs=43.6
Q ss_pred EEEEE-CCeEEEeccccccccCHHHHHHhhcccccccccceEEeCCCCCCHHHHHHHHHHhc
Q 006764 30 IVVEV-GEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCY 90 (632)
Q Consensus 30 V~I~V-~~~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~~~v~L~d~pgga~~felv~~FcY 90 (632)
|+|+- ||+.|.+.+.+. -.|+.++.|+.....+ . ..|.|++++ +.+++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~-~--~~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDE-D--EPIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCC-G--TEEEETTS---HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccc-c--cccccCccC--HHHHHHHHHHHH
Confidence 55655 899999988855 5899999999864433 1 279999995 599999999997
No 21
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.18 Score=49.36 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=70.4
Q ss_pred CCeEEEeccccccccCHHHHHHhhcccccccccceEEeCCCCCCHHHHHHHHHHhcCCC---------------------
Q 006764 35 GEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVK--------------------- 93 (632)
Q Consensus 35 ~~~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~~~v~L~d~pgga~~felv~~FcYg~~--------------------- 93 (632)
+|+.|.+-..+ |..|.-++.++.+..-. .....|-|+.|. +.+|.+|++|||--+
T Consensus 13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~-~~~~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~W 88 (162)
T KOG1724|consen 13 DGEIFEVEEEV-ARQSQTISAHMIEDGCA-DENDPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEW 88 (162)
T ss_pred CCceeehhHHH-HHHhHHHHHHHHHcCCC-ccCCccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHH
Confidence 88999987764 57799999888764321 111368888885 599999999999522
Q ss_pred ----cccCcchHhHHHHhhcccccCcccCcccHHHHHHHHHHHhhhc
Q 006764 94 ----LELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLR 136 (632)
Q Consensus 94 ----i~it~~NV~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~v~~ 136 (632)
+.+...++..|.-||.||++.. |+..|+......+..
T Consensus 89 D~~Flk~d~~tLfdli~AAnyLdi~g------Ll~~~ck~va~mikg 129 (162)
T KOG1724|consen 89 DAEFLKVDQGTLFDLILAANYLDIKG------LLDLTCKTVANMIKG 129 (162)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcccHH------HHHHHHHHHHHHHcc
Confidence 1234457889999999999998 999999998887643
No 22
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=89.66 E-value=0.25 Score=51.82 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=39.8
Q ss_pred EEEeccccccccCHHHHHHhhcccc---cc-----cccceEEeCCCCCCHHHHHH-HHHHhcCCCcccC
Q 006764 38 SFHLHKFPLLSRSGAMERLIAEASE---KA-----EEKCIINLLDIPGRAKTFEL-VAKFCYGVKLELT 97 (632)
Q Consensus 38 ~F~lHK~vLas~S~yfr~Lf~~~~~---e~-----~~~~~v~L~d~pgga~~fel-v~~FcYg~~i~it 97 (632)
++.+||.+.+++|++||.|+...-. |. ....+|.+...- =|.+|.- ++.|+||-+++++
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I-~PkafA~i~lhclYTD~lDlS 329 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELI-FPKAFAPIFLHCLYTDRLDLS 329 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhh-cchhhhhhhhhhheecccchh
Confidence 5789999999999999999864221 11 123457765421 2366764 5688999888765
No 23
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=82.78 E-value=0.2 Score=43.54 Aligned_cols=41 Identities=5% Similarity=0.031 Sum_probs=33.1
Q ss_pred ccccccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhc
Q 006764 217 YEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYL 257 (632)
Q Consensus 217 ~EDl~~Lsldlf~rvI~am~~~g~~~e~I~~aL~~Yakk~l 257 (632)
.+++..||++.+..+++.......++..|..+++.|+++..
T Consensus 34 ~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~ 74 (103)
T PF07707_consen 34 SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNP 74 (103)
T ss_dssp SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTH
T ss_pred chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCH
Confidence 35889999999999999887777788999999999997653
No 24
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=80.04 E-value=2.1 Score=46.92 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=58.3
Q ss_pred CeEEEeccccccccCHHHHHHhhccccccccc---ceEEeCCCCCCHHHHHHHHHHhcCCCcccCcchHhHHHHhhcccc
Q 006764 36 EMSFHLHKFPLLSRSGAMERLIAEASEKAEEK---CIINLLDIPGRAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLE 112 (632)
Q Consensus 36 ~~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~---~~v~L~d~pgga~~felv~~FcYg~~i~it~~NV~~L~cAA~~Lq 112 (632)
+..+|+|..++ ++..||+.||++.-.|++.. ....++.+ .....|.+++|.|+-+-+|-++-...++--|..|-
T Consensus 300 ~~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~--~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~la 376 (516)
T KOG0511|consen 300 EDRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSL--ADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLA 376 (516)
T ss_pred cccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchH--HHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhh
Confidence 35699999987 68999999999865542212 22344444 34789999999999999999988888888888876
Q ss_pred cCc
Q 006764 113 MTE 115 (632)
Q Consensus 113 M~e 115 (632)
...
T Consensus 377 l~~ 379 (516)
T KOG0511|consen 377 LAD 379 (516)
T ss_pred hhh
Confidence 664
No 25
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=76.68 E-value=9.6 Score=40.94 Aligned_cols=112 Identities=16% Similarity=0.271 Sum_probs=78.5
Q ss_pred hhcCCCeeEEEEECCeEEEeccccccccCH-HHHHHhhccc---ccccccceEEe-CCCCCCHHHHHHHHHHhcCCCccc
Q 006764 22 CTSGLPSDIVVEVGEMSFHLHKFPLLSRSG-AMERLIAEAS---EKAEEKCIINL-LDIPGRAKTFELVAKFCYGVKLEL 96 (632)
Q Consensus 22 r~~g~~~DV~I~V~~~~F~lHK~vLas~S~-yfr~Lf~~~~---~e~~~~~~v~L-~d~pgga~~felv~~FcYg~~i~i 96 (632)
|..|-.--+++.|++..|-.-+++|-+.-. -+-.||..+- .. ++..+.++ .|+ +...|..|++|--+|.|.-
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~p-NErgEyeVAdGi--~s~vFRAILdYYksG~iRC 166 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSP-NERDEFEVADGM--TSSCFRAILDYYQSGTMRC 166 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCC-CcCCceehhcch--hHHHHHHHHHHHhcCceeC
Confidence 556667778999999999999999877643 3446665421 11 12245555 466 6799999999988888764
Q ss_pred C-cchHhHHHHhhcccccCcc---------------cCcccHHHHHHHHHHHhhhc
Q 006764 97 T-ASNVVYLRCAAEHLEMTEE---------------YGDGNLITQTETFLNQVVLR 136 (632)
Q Consensus 97 t-~~NV~~L~cAA~~LqM~e~---------------~~~~NL~~~ce~FL~~~v~~ 136 (632)
- .-.|..|+.|.+||-++=+ .+.+...++.+.||++.+++
T Consensus 167 P~~vSvpELrEACDYLlipF~a~TvkCqnL~aLlHELSNeGAR~QFe~fLEe~ILP 222 (438)
T KOG3840|consen 167 PSSVSVSELREACDYLLVPFNAQTVKCQNLHALLHELSNEGAREQFSQFLEEIILP 222 (438)
T ss_pred CCCCchHHHHhhcceEEeecccceeeehhHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 3 3567889999999988743 33344566777777777665
No 26
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=74.39 E-value=7.8 Score=43.31 Aligned_cols=83 Identities=14% Similarity=0.095 Sum_probs=60.1
Q ss_pred EEEEECCeEEEeccccccccC--HHHHHHhhccccccc-ccceEEeCCCCCCHHHHHHHHHHhcCCCcccCcchHhHHHH
Q 006764 30 IVVEVGEMSFHLHKFPLLSRS--GAMERLIAEASEKAE-EKCIINLLDIPGRAKTFELVAKFCYGVKLELTASNVVYLRC 106 (632)
Q Consensus 30 V~I~V~~~~F~lHK~vLas~S--~yfr~Lf~~~~~e~~-~~~~v~L~d~pgga~~felv~~FcYg~~i~it~~NV~~L~c 106 (632)
|.+.|||+.|.--+.-|+... .+|-+|++....... +...|-|. -.|+.|..+++|.-|+++.+..--...++-
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 568999999999998887765 699999974321101 11224433 257999999999999999995544444555
Q ss_pred -hhcccccCc
Q 006764 107 -AAEHLEMTE 115 (632)
Q Consensus 107 -AA~~LqM~e 115 (632)
=|.|.+++.
T Consensus 90 dEA~fYGl~~ 99 (465)
T KOG2714|consen 90 DEAMFYGLTP 99 (465)
T ss_pred hhhhhcCcHH
Confidence 899999997
No 27
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=70.80 E-value=3.5 Score=35.23 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=28.8
Q ss_pred ccCcchHhHHHHhhcccccCcccCcccHHHHHHHHHHHhhh
Q 006764 95 ELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVL 135 (632)
Q Consensus 95 ~it~~NV~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~v~ 135 (632)
.++...+..|+.||.||+++. |++.|+.++...+.
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~------L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKG------LLDLCCKYIANMIK 44 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HH------HHHHHHHHHHHHHT
T ss_pred HcCHHHHHHHHHHHHHHcchH------HHHHHHHHHHHHhc
Confidence 347778999999999999998 99999999988774
No 28
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=68.22 E-value=6 Score=26.62 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHhhhh
Q 006764 547 GMDNMRMRVSELEKECSNM 565 (632)
Q Consensus 547 e~~~mr~rv~eLEkec~~m 565 (632)
||++.|.||.+||++...-
T Consensus 2 E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSEC 20 (23)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6899999999999987643
No 29
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=65.16 E-value=2 Score=47.20 Aligned_cols=69 Identities=23% Similarity=0.028 Sum_probs=47.9
Q ss_pred hhHHHhhcCC--CeeEEEEE-CCeEEEeccccccccCHHHHHHhh-cccccccccceE-EeCCCCCCHHHHHHHHHHhcC
Q 006764 17 GQAWFCTSGL--PSDIVVEV-GEMSFHLHKFPLLSRSGAMERLIA-EASEKAEEKCII-NLLDIPGRAKTFELVAKFCYG 91 (632)
Q Consensus 17 ~~~w~r~~g~--~~DV~I~V-~~~~F~lHK~vLas~S~yfr~Lf~-~~~~e~~~~~~v-~L~d~pgga~~felv~~FcYg 91 (632)
-++-++.+++ ..|++..+ .|..|-+||+.|+++|.||..-+. .... ..+| ...-+ +.+|+..++|.|-
T Consensus 137 i~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~----~heI~~~~v~---~~~f~~flk~lyl 209 (516)
T KOG0511|consen 137 IQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQ----GHEIEAHRVI---LSAFSPFLKQLYL 209 (516)
T ss_pred HHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhccc----cCchhhhhhh---HhhhhHHHHHHHH
Confidence 3556778877 33888877 789999999999999887754332 2211 1233 33334 5899999999995
Q ss_pred C
Q 006764 92 V 92 (632)
Q Consensus 92 ~ 92 (632)
.
T Consensus 210 ~ 210 (516)
T KOG0511|consen 210 N 210 (516)
T ss_pred h
Confidence 4
No 30
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=60.45 E-value=25 Score=33.46 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=66.6
Q ss_pred EEEE-ECCeEEEeccccccccCHHHHHHhhcccccccccceEEeCCCCCCHHHHHHHHHHhcCCC---------ccc---
Q 006764 30 IVVE-VGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVK---------LEL--- 96 (632)
Q Consensus 30 V~I~-V~~~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~~~v~L~d~pgga~~felv~~FcYg~~---------i~i--- 96 (632)
|.|. .+|+.|.+.+. .|-+|-.++.|+..... ....+.++.+ .+..|..+.+||---+ ++|
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~~---~n~p~p~pnV--rSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCDSTA---CNYPIPAPNV--RSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhccccc---cCCCCcccch--hHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 4454 48999999886 67889999998865433 1233444556 5689999999997322 111
Q ss_pred -------------CcchHhHHHHhhcccccCcccCcccHHHHHHHHHHHhhh
Q 006764 97 -------------TASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVL 135 (632)
Q Consensus 97 -------------t~~NV~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~v~ 135 (632)
...-...+.-||.||++.. |++.||+-..+.+.
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemir 123 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMIR 123 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHHc
Confidence 1223456778999999999 99999998888774
No 31
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=56.22 E-value=36 Score=35.33 Aligned_cols=90 Identities=13% Similarity=0.201 Sum_probs=66.7
Q ss_pred EEEEECCeEEEeccccccccC--HHHHHHhhccc--ccccccceEEeCCCCCCHHHHHHHHHHhcCCCc-ccCcchHhHH
Q 006764 30 IVVEVGEMSFHLHKFPLLSRS--GAMERLIAEAS--EKAEEKCIINLLDIPGRAKTFELVAKFCYGVKL-ELTASNVVYL 104 (632)
Q Consensus 30 V~I~V~~~~F~lHK~vLas~S--~yfr~Lf~~~~--~e~~~~~~v~L~d~pgga~~felv~~FcYg~~i-~it~~NV~~L 104 (632)
|-+.+||+.|.--..-|.-+= .-+-+||.... .+...+.-+-|.- +|.-||-++.|.-.|.| ..+.-|+..+
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDR---sp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDR---SPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEcc---CchhhHHHHHHHhcCceeecCCccHHHH
Confidence 567899999998887777763 46788997632 1112233455443 45899999999997664 5777899999
Q ss_pred HHhhcccccCcccCcccHHHHHHH
Q 006764 105 RCAAEHLEMTEEYGDGNLITQTET 128 (632)
Q Consensus 105 ~cAA~~LqM~e~~~~~NL~~~ce~ 128 (632)
+.+|.|+|+-. |++..+.
T Consensus 88 LeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHhhHHhhHh------HHhHHhh
Confidence 99999999987 7777766
No 32
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=55.94 E-value=10 Score=32.18 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=34.8
Q ss_pred cccccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 006764 218 EDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKY 256 (632)
Q Consensus 218 EDl~~Lsldlf~rvI~am~~~g~~~e~I~~aL~~Yakk~ 256 (632)
+++..|+.+.+..+|.+......++..+.++++.|+++.
T Consensus 35 ~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~ 73 (101)
T smart00875 35 EEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD 73 (101)
T ss_pred cHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC
Confidence 688999999999999998887778999999999999753
No 33
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=55.08 E-value=7.3 Score=40.75 Aligned_cols=90 Identities=19% Similarity=0.132 Sum_probs=65.6
Q ss_pred CeEEEeccccccccCHHHHHHhhcccccccccceEEeCCCCCCHHHHHHHHHHhcCCCcccCcchHh---HHHHhhcccc
Q 006764 36 EMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTASNVV---YLRCAAEHLE 112 (632)
Q Consensus 36 ~~~F~lHK~vLas~S~yfr~Lf~~~~~e~~~~~~v~L~d~pgga~~felv~~FcYg~~i~it~~NV~---~L~cAA~~Lq 112 (632)
+..+..|+.+++++|+-|+.|+.....+ .....+.+.+. +++.++.+..|.|...-..+..++. .++++|.-.+
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~-~~~~~~~~~d~--~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFK-ESSKLITLLEE--KPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccch-hcccccccccc--chhhHhhhceEEEeccchHHHHHhhcCChhhhhccccc
Confidence 4559999999999999999998764332 12233455555 4688999999999865555555554 6777777766
Q ss_pred cCcccCcccHHHHHHHHHHHhh
Q 006764 113 MTEEYGDGNLITQTETFLNQVV 134 (632)
Q Consensus 113 M~e~~~~~NL~~~ce~FL~~~v 134 (632)
-.. |...|...|...+
T Consensus 186 ~~~------lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 186 NRH------LKLACMPVLLSLI 201 (297)
T ss_pred cHH------HHHHHHHHHHHHH
Confidence 665 9999999888865
No 34
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=53.51 E-value=20 Score=31.20 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=23.6
Q ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHH
Q 006764 546 VGMDNMRMRVSELEKECSNMKQEIEK 571 (632)
Q Consensus 546 ~e~~~mr~rv~eLEkec~~mk~~~~k 571 (632)
.||+.||..|.+||..+..||+..+.
T Consensus 39 ~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 39 QEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999998865
No 35
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=50.94 E-value=9.2 Score=34.09 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=31.5
Q ss_pred cCCCCCCCchhHHHHHHHHHHhCCCCCHHhHHhhhccccccCC
Q 006764 430 VPDYARPLDDGLYRAIDIYLKSHPWLAESDREQLCRLMDCQKL 472 (632)
Q Consensus 430 lP~~aR~~~DgLYrAIDiYLkaHp~lse~Er~~lC~~ldcqKL 472 (632)
+|++.......+|+|+..||.+....+. .|-++++.-|-+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 3444445678899999999999987775 78888877766553
No 36
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=50.93 E-value=18 Score=39.20 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=26.7
Q ss_pred HHhHHHHHHHHHHHHHHhhhhHHHHHHhcC
Q 006764 545 KVGMDNMRMRVSELEKECSNMKQEIEKLGR 574 (632)
Q Consensus 545 r~e~~~mr~rv~eLEkec~~mk~~~~k~~k 574 (632)
|.||+.+..||.||||+...++++++.+.+
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 457999999999999999999999988754
No 37
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=50.82 E-value=43 Score=33.29 Aligned_cols=101 Identities=19% Similarity=0.131 Sum_probs=69.0
Q ss_pred CCCeeEEEEECCeEEEeccccccccC-HHHHHHhhccccc--ccccceEEeCCCCCCHHHHHHHHHHhcCCCcccCcchH
Q 006764 25 GLPSDIVVEVGEMSFHLHKFPLLSRS-GAMERLIAEASEK--AEEKCIINLLDIPGRAKTFELVAKFCYGVKLELTASNV 101 (632)
Q Consensus 25 g~~~DV~I~V~~~~F~lHK~vLas~S-~yfr~Lf~~~~~e--~~~~~~v~L~d~pgga~~felv~~FcYg~~i~it~~NV 101 (632)
|.-.=|-+.|||..|.--|.-|.--+ .++.++....++- +.+..---|-| -+|.-|.-|++|.-.|++-+++---
T Consensus 18 g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlID--RDP~~FgpvLNylRhgklvl~~l~e 95 (210)
T KOG2715|consen 18 GVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLID--RDPFYFGPVLNYLRHGKLVLNKLSE 95 (210)
T ss_pred CceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEec--cCcchHHHHHHHHhcchhhhhhhhh
Confidence 33334567899999999999998888 5556666543211 01111112212 2468999999999999999999666
Q ss_pred hHHHHhhcccccCcccCcccHHHHHHHHHHHh
Q 006764 102 VYLRCAAEHLEMTEEYGDGNLITQTETFLNQV 133 (632)
Q Consensus 102 ~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~ 133 (632)
..++.-|+|...+. |+....+-+.+.
T Consensus 96 eGvL~EAefyn~~~------li~likd~i~dR 121 (210)
T KOG2715|consen 96 EGVLEEAEFYNDPS------LIQLIKDRIQDR 121 (210)
T ss_pred hccchhhhccCChH------HHHHHHHHHHHH
Confidence 66888999988886 776665555543
No 38
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=47.85 E-value=29 Score=28.54 Aligned_cols=32 Identities=34% Similarity=0.389 Sum_probs=27.6
Q ss_pred hHhHHHHHHhHHHHHHHHHHHHHHhhhhHHHH
Q 006764 538 VRENQVLKVGMDNMRMRVSELEKECSNMKQEI 569 (632)
Q Consensus 538 ~re~~~lr~e~~~mr~rv~eLEkec~~mk~~~ 569 (632)
+.|.+.||..+.....|+.+||.|+.-+|+-.
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55778999999999999999999998888764
No 39
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=46.55 E-value=11 Score=29.48 Aligned_cols=20 Identities=40% Similarity=0.752 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhhhHH
Q 006764 548 MDNMRMRVSELEKECSNMKQ 567 (632)
Q Consensus 548 ~~~mr~rv~eLEkec~~mk~ 567 (632)
-+.+|.||+|||.|...+|+
T Consensus 13 ~e~l~vrv~eLEeEV~~LrK 32 (48)
T PF14077_consen 13 QEQLRVRVSELEEEVRTLRK 32 (48)
T ss_pred cchheeeHHHHHHHHHHHHH
Confidence 36789999999999877764
No 40
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=45.59 E-value=23 Score=37.82 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=34.4
Q ss_pred CccchhHhHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhcC
Q 006764 533 GWASTVRENQVLKVGMDNMRMRVSELEKECSNMKQEIEKLGR 574 (632)
Q Consensus 533 ~~~~~~re~~~lr~e~~~mr~rv~eLEkec~~mk~~~~k~~k 574 (632)
+|..+..|.+.|...-+.+|.++.+||||..-||+-|...-+
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566677788888899999999999999999999976543
No 41
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=33.47 E-value=75 Score=27.27 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=30.3
Q ss_pred CccchhHhHHHHHHhHHHHHHHHHHHHHHhhhhHHHHH
Q 006764 533 GWASTVRENQVLKVGMDNMRMRVSELEKECSNMKQEIE 570 (632)
Q Consensus 533 ~~~~~~re~~~lr~e~~~mr~rv~eLEkec~~mk~~~~ 570 (632)
+...+..+|-+||.+++.|+..+.++.+......+.++
T Consensus 37 ~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 37 SIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44567889999999999999999998888776666554
No 42
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=32.65 E-value=79 Score=30.42 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=27.8
Q ss_pred chhHhHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHh
Q 006764 536 STVRENQVLKVGMDNMRMRVSELEKECSNMKQEIEKL 572 (632)
Q Consensus 536 ~~~re~~~lr~e~~~mr~rv~eLEkec~~mk~~~~k~ 572 (632)
+...|+..|-.+++.|+.||.+||.-+++...-|+..
T Consensus 77 ~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 77 TLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4566777777788888888888888877777666543
No 43
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.45 E-value=65 Score=26.69 Aligned_cols=52 Identities=25% Similarity=0.396 Sum_probs=31.1
Q ss_pred hHhHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhcCCCCCCccccccc-ccccc
Q 006764 538 VRENQVLKVGMDNMRMRVSELEKECSNMKQEIEKLGRGKPSSTWGNVSK-KFGFK 591 (632)
Q Consensus 538 ~re~~~lr~e~~~mr~rv~eLEkec~~mk~~~~k~~k~~~~~~~~~~~~-~~g~~ 591 (632)
..+...++.++..++.++.+|+++-..++++++++.+.. ..-..+.| +||..
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~--~~ie~~AR~~lgm~ 68 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDP--DYIEKVAREKLGMV 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHcCCc
Confidence 334456666777777777777777777777777762221 12223444 66654
No 44
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=30.29 E-value=36 Score=41.42 Aligned_cols=75 Identities=32% Similarity=0.600 Sum_probs=50.5
Q ss_pred cccCCCCCCcccchhHHHHHHHHHHHhcccccCCCCCCCCCCCccCCCCCchhHHHHHHhHhhhhhhhcCCCCCChhhHH
Q 006764 345 LMPNFSYSMETLYNVECVQRILDHFLAMDQITGGASPCSVDDGQLLGSPSLTPITMVAKLIDGYLAEVAPDVNLKLPKFQ 424 (632)
Q Consensus 345 Lips~~~~~~tlyDvd~V~ril~~Fl~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEvA~D~nL~~~kF~ 424 (632)
+||...|+ +.+.++-+++||-..-. +|.|=.+..+|..+.+..|.
T Consensus 252 iLP~Lt~G-----~~e~m~~Lv~~F~p~l~------------------------------f~~~D~~~~~~~~~~Le~F~ 296 (802)
T PF13764_consen 252 ILPFLTYG-----NEEKMDALVEHFKPYLD------------------------------FDKFDEEHSPDEQFKLECFC 296 (802)
T ss_pred HhhHHhcC-----CHHHHHHHHHHHHHhcC------------------------------hhhcccccCchHHHHHHHHH
Confidence 46776665 56888999999943211 33343455566678899999
Q ss_pred HHHHhcCCCC--CC-----CchhHHH-HHHHHHHh-CCCC
Q 006764 425 KLAATVPDYA--RP-----LDDGLYR-AIDIYLKS-HPWL 455 (632)
Q Consensus 425 ~Lae~lP~~a--R~-----~~DgLYr-AIDiYLka-Hp~l 455 (632)
.+++++|.++ .. .+=|++. |++ ||.. +|..
T Consensus 297 ~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~-YL~~~~P~~ 335 (802)
T PF13764_consen 297 EIAEGIPNNSNGNRLKDKILESGIVQDAID-YLLKHFPSL 335 (802)
T ss_pred HHHhcCCCCCchHHHHHHHHHhhHHHHHHH-HHHHhCccc
Confidence 9999999877 22 2345666 888 6655 6665
No 45
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=30.29 E-value=1.1e+02 Score=35.09 Aligned_cols=94 Identities=17% Similarity=0.104 Sum_probs=55.5
Q ss_pred CCCeeEEEEECCeEEEecccccccc-CHHHHHHhhccccc---------ccccceEEeCCCCCCHHHHHHHHHHhcCCCc
Q 006764 25 GLPSDIVVEVGEMSFHLHKFPLLSR-SGAMERLIAEASEK---------AEEKCIINLLDIPGRAKTFELVAKFCYGVKL 94 (632)
Q Consensus 25 g~~~DV~I~V~~~~F~lHK~vLas~-S~yfr~Lf~~~~~e---------~~~~~~v~L~d~pgga~~felv~~FcYg~~i 94 (632)
....-|+|.|||..+.+-+..|... =.++.++......+ +....+.-+. -.|.+|..|++|-+||++
T Consensus 28 ~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFD---R~P~~F~~Vl~fYrtGkL 104 (477)
T KOG3713|consen 28 ALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFD---RHPGAFAYVLNFYRTGKL 104 (477)
T ss_pred CcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeec---cChHHHHHHHHHHhcCee
Confidence 3455688999999999988777662 23444444422111 0112334433 346799999999999999
Q ss_pred ccCcchHhHH--HHhhcccccCcccCcccHHHHHH
Q 006764 95 ELTASNVVYL--RCAAEHLEMTEEYGDGNLITQTE 127 (632)
Q Consensus 95 ~it~~NV~~L--~cAA~~LqM~e~~~~~NL~~~ce 127 (632)
..- .+|..+ ..=-+|=++++ +-++.||
T Consensus 105 H~p-~~vC~~~F~eEL~yWgI~~-----~~le~CC 133 (477)
T KOG3713|consen 105 HVP-ADVCPLSFEEELDYWGIDE-----AHLESCC 133 (477)
T ss_pred ccc-cccchHHHHHHHHHhCCCh-----hhhhHHh
Confidence 763 334332 23335556655 4455554
No 46
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=28.90 E-value=80 Score=37.09 Aligned_cols=67 Identities=24% Similarity=0.306 Sum_probs=53.6
Q ss_pred CCchhHHHHHHhHhhhhhhhcCCCCCChhhHHHHHHhcCCCCCCCc--hhHHHHHHHHHHhCCCCCHHhHH
Q 006764 393 PSLTPITMVAKLIDGYLAEVAPDVNLKLPKFQKLAATVPDYARPLD--DGLYRAIDIYLKSHPWLAESDRE 461 (632)
Q Consensus 393 ~~~~~~~~VakLvD~YLaEvA~D~nL~~~kF~~Lae~lP~~aR~~~--DgLYrAIDiYLkaHp~lse~Er~ 461 (632)
|-+....|+|.-++.-|. -||..|++++=+.+-...+-+....| |.|=-|++.|+.--|.|..-||+
T Consensus 299 p~P~~V~KiAasf~A~ly--~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~ 367 (652)
T COG2433 299 PAPETVKKIAASFNAVLY--TPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERK 367 (652)
T ss_pred CChHHHHHHHHHcCCccc--CCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446678888888777665 68999999988887778887777777 88999999999877777777665
No 47
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.18 E-value=1.1e+02 Score=30.12 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=21.7
Q ss_pred hHhHHHHHHhHHHHHHHHHHHHHHhhhhHHHHH
Q 006764 538 VRENQVLKVGMDNMRMRVSELEKECSNMKQEIE 570 (632)
Q Consensus 538 ~re~~~lr~e~~~mr~rv~eLEkec~~mk~~~~ 570 (632)
..||+.|+.++..++.++.+||++...++++++
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777666655443
No 48
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=27.26 E-value=46 Score=34.00 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=26.0
Q ss_pred HhcC--CCCCCCchhHHHHHHHHHHhCCCCCHHhHH
Q 006764 428 ATVP--DYARPLDDGLYRAIDIYLKSHPWLAESDRE 461 (632)
Q Consensus 428 e~lP--~~aR~~~DgLYrAIDiYLkaHp~lse~Er~ 461 (632)
+-+| +..+..-+|=|+||..|||.||.==|.++.
T Consensus 184 ~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~ 219 (237)
T COG3510 184 NDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTS 219 (237)
T ss_pred cCCCCcccchhcCCChHHHHHHHHHhCCcccccchh
Confidence 3445 666667899999999999999976565554
No 49
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=27.24 E-value=46 Score=27.32 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHhCCCCCH
Q 006764 439 DGLYRAIDIYLKSHPWLAE 457 (632)
Q Consensus 439 DgLYrAIDiYLkaHp~lse 457 (632)
--||.|+.-||+.||+-..
T Consensus 8 e~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHHcCCCchH
Confidence 4599999999999997654
No 50
>PHA01750 hypothetical protein
Probab=24.55 E-value=1.4e+02 Score=25.35 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=24.0
Q ss_pred hHhHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHH
Q 006764 538 VRENQVLKVGMDNMRMRVSELEKECSNMKQEIEK 571 (632)
Q Consensus 538 ~re~~~lr~e~~~mr~rv~eLEkec~~mk~~~~k 571 (632)
..|...|+.+++..+.|.-+||++...+|+.+.|
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 4456677777888888888888777777665543
No 51
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.79 E-value=1.9e+02 Score=23.45 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHH
Q 006764 548 MDNMRMRVSELEKECSNMKQEI 569 (632)
Q Consensus 548 ~~~mr~rv~eLEkec~~mk~~~ 569 (632)
++.+..+|.+|+.+...|+.++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~ 49 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKEL 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333333
No 52
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=22.40 E-value=51 Score=37.27 Aligned_cols=42 Identities=24% Similarity=0.548 Sum_probs=31.4
Q ss_pred CCChhhHHHHHHhcCCCCCCCchhHHHHHHHHHHhCCCCCHHh
Q 006764 417 NLKLPKFQKLAATVPDYARPLDDGLYRAIDIYLKSHPWLAESD 459 (632)
Q Consensus 417 nL~~~kF~~Lae~lP~~aR~~~DgLYrAIDiYLkaHp~lse~E 459 (632)
++--..=+++-|-| .+.+|..|-||-|.++|-+.|||+.+.+
T Consensus 197 GveYeERMe~Leev-tyPkPL~e~L~~af~~y~~~hPWv~~~~ 238 (461)
T PF12029_consen 197 GVEYEERMERLEEV-TYPKPLAELLEAAFETYRRGHPWVGDFE 238 (461)
T ss_pred CCCHHHHHHHHhhC-CCCCchHHHHHHHHHHHHhcCCcccCCC
Confidence 33334434444444 3889999999999999999999998765
No 53
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.30 E-value=88 Score=32.80 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHH
Q 006764 547 GMDNMRMRVSELEKECSNMKQEIEK 571 (632)
Q Consensus 547 e~~~mr~rv~eLEkec~~mk~~~~k 571 (632)
.=|+.|.|+.|||+|....++++.+
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~ 111 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISS 111 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665554444443
No 54
>smart00338 BRLZ basic region leucin zipper.
Probab=20.90 E-value=1.8e+02 Score=23.58 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=16.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHhhhhHHHH
Q 006764 540 ENQVLKVGMDNMRMRVSELEKECSNMKQEI 569 (632)
Q Consensus 540 e~~~lr~e~~~mr~rv~eLEkec~~mk~~~ 569 (632)
+.+.|..+.+.++.+|..|+.++..++.++
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555556666666655555544
No 55
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=20.63 E-value=2.7e+02 Score=21.90 Aligned_cols=30 Identities=33% Similarity=0.454 Sum_probs=24.0
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHh
Q 006764 543 VLKVGMDNMRMRVSELEKECSNMKQEIEKL 572 (632)
Q Consensus 543 ~lr~e~~~mr~rv~eLEkec~~mk~~~~k~ 572 (632)
.-|..++.|..+|.+|+.+...+++++..+
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888889988888888888765
Done!