BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006765
         (632 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
           DOMAIN
 pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
           DOMAIN
 pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
           DOMAIN
 pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
           DOMAIN
 pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
           DOMAIN
 pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
           DOMAIN
          Length = 130

 Score = 36.2 bits (82), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 20  SAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTF 79
           S  + +D+ ++V    F  HK  L++       I+ +    ++     + E  P G   F
Sbjct: 28  SRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEG---F 84

Query: 80  LIAAKFCYGHRVEFTPRNIVTVYAAADYLEM 110
            I   F Y  R+     NI+ V A A YL+M
Sbjct: 85  CILLDFMYTSRLNLREGNIMAVMATAMYLQM 115


>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
           Transcription Regulator
 pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
           Transcription Regulator
          Length = 117

 Score = 36.2 bits (82), Expect = 0.055,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 12/93 (12%)

Query: 22  GLPSDITVIVEGINFHLHKFPLVSKCAKIARIY--EESQSTHIKTFTTELEDFPGGPGTF 79
           GL  D T +V+G++F  HK  +++ C++  ++   ++    H+            G G  
Sbjct: 23  GLLCDCTFVVDGVHFKAHK-AVLAACSEYFKMLFVDQKDVVHLDISNA------AGLGQV 75

Query: 80  LIAAKFCYGHRVEFTPRNIVTVYAAADYLEMTD 112
           L   +F Y  ++  +P N+  V A A +L+M D
Sbjct: 76  L---EFMYTAKLSLSPENVDDVLAVATFLQMQD 105


>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
 pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
 pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
 pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
          Length = 119

 Score = 36.2 bits (82), Expect = 0.055,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 12/93 (12%)

Query: 22  GLPSDITVIVEGINFHLHKFPLVSKCAKIARIY--EESQSTHIKTFTTELEDFPGGPGTF 79
           GL  D T +V+G++F  HK  +++ C++  ++   ++    H+            G G  
Sbjct: 25  GLLCDCTFVVDGVHFKAHK-AVLAACSEYFKMLFVDQKDVVHLDISNA------AGLGQV 77

Query: 80  LIAAKFCYGHRVEFTPRNIVTVYAAADYLEMTD 112
           L   +F Y  ++  +P N+  V A A +L+M D
Sbjct: 78  L---EFMYTAKLSLSPENVDDVLAVATFLQMQD 107


>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
           Domain To 2.2 Angstrom
 pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
           Domain To 2.2 Angstrom
 pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
           Domain To 1.3 Angstrom
 pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
           Smrt Co-Repressor Peptide
 pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
           Smrt Co-Repressor Peptide
 pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
           With The Bcor Bbd Corepressor Peptide
 pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
           With The Bcor Bbd Corepressor Peptide
 pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
           With The Bcor Bbd Corepressor Peptide
 pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
           With The Bcor Bbd Corepressor Peptide
 pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
           With The Bcor Bbd Corepressor Peptide
 pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
           With The Bcor Bbd Corepressor Peptide
 pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
           With The Bcor Bbd Corepressor Peptide
 pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
           With The Bcor Bbd Corepressor Peptide
 pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
           The Molecule Inhibitor 79-6
 pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
           The Molecule Inhibitor 79-6
          Length = 127

 Score = 35.0 bits (79), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 20  SAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTF 79
           S  + +D+ ++V    F  HK  L++       I+ +    ++     + E  P G   F
Sbjct: 25  SRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEG---F 81

Query: 80  LIAAKFCYGHRVEFTPRNIVTVYAAADYLEM 110
            I   F Y  R+     NI+ V A A YL+M
Sbjct: 82  NILLDFMYTSRLNLREGNIMAVMATAMYLQM 112


>pdb|3TNU|B Chain B, Heterocomplex Of Coil 2b Domains Of Human Intermediate
           Filament Proteins, Keratin 5 (Krt5) And Keratin 14
           (Krt14)
          Length = 129

 Score = 29.3 bits (64), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 550 RSRVGELEEEFGKIKQEMKRVTKSHSSLSSPRL 582
           R+++ ELEE   K KQ+M R+ + +  L + +L
Sbjct: 81  RNKLAELEEALQKAKQDMARLLREYQELMNTKL 113


>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
           Plant Nadph Oxidase
 pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
           Plant Nadph Oxidase
          Length = 179

 Score = 28.9 bits (63), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 505 ALDTESAPAGPLTGPSDMAGEIVQRDGWVTVARENHGLKVDMDKMRSRVGE 555
           A+ T+S+ A  L G   +  + V  DGW  V +  + L+VD   +RSR G+
Sbjct: 1   AMGTKSSAAVALKGLQFVTAK-VGNDGWAAVEKRFNQLQVDGVLLRSRFGK 50


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,688,769
Number of Sequences: 62578
Number of extensions: 692584
Number of successful extensions: 1633
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1626
Number of HSP's gapped (non-prelim): 13
length of query: 632
length of database: 14,973,337
effective HSP length: 105
effective length of query: 527
effective length of database: 8,402,647
effective search space: 4428194969
effective search space used: 4428194969
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)