Query 006765
Match_columns 632
No_of_seqs 321 out of 994
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 14:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 1.4E-88 3E-93 693.2 23.3 257 209-470 1-258 (258)
2 KOG4441 Proteins containing BT 99.9 3.2E-26 6.9E-31 259.0 15.3 233 16-329 28-260 (571)
3 PHA02713 hypothetical protein; 99.9 1.6E-25 3.6E-30 252.8 14.3 230 15-328 16-247 (557)
4 PHA02790 Kelch-like protein; P 99.9 2.8E-24 6E-29 238.7 10.7 174 18-251 16-195 (480)
5 PHA03098 kelch-like protein; P 99.9 8.1E-23 1.8E-27 228.5 16.0 220 21-329 6-236 (534)
6 PF00651 BTB: BTB/POZ domain; 99.7 1.2E-16 2.6E-21 141.4 8.5 104 18-130 4-110 (111)
7 smart00225 BTB Broad-Complex, 99.5 7.6E-15 1.7E-19 122.4 6.6 90 26-124 1-90 (90)
8 KOG2075 Topoisomerase TOP1-int 99.3 2.3E-11 4.9E-16 132.1 12.1 185 13-250 103-294 (521)
9 KOG4350 Uncharacterized conser 99.1 2.9E-10 6.3E-15 121.1 11.3 125 17-157 37-162 (620)
10 KOG4591 Uncharacterized conser 98.9 2.4E-09 5.3E-14 105.4 6.1 132 5-157 44-183 (280)
11 KOG4682 Uncharacterized conser 98.6 1.2E-07 2.6E-12 101.6 9.2 132 19-166 64-199 (488)
12 KOG0783 Uncharacterized conser 98.4 7.2E-07 1.6E-11 102.2 7.4 126 24-169 712-847 (1267)
13 KOG0783 Uncharacterized conser 98.1 3.2E-06 6.9E-11 97.1 6.8 67 22-90 556-633 (1267)
14 PF11822 DUF3342: Domain of un 97.7 2.5E-05 5.4E-10 82.8 4.3 93 27-131 1-104 (317)
15 smart00512 Skp1 Found in Skp1 97.0 0.0013 2.8E-08 58.9 5.8 81 27-110 4-104 (104)
16 PF02214 BTB_2: BTB/POZ domain 96.6 0.0013 2.7E-08 57.5 2.7 83 27-112 1-88 (94)
17 KOG2716 Polymerase delta-inter 96.4 0.014 3E-07 59.9 8.7 95 27-131 7-105 (230)
18 KOG3473 RNA polymerase II tran 95.0 0.095 2.1E-06 47.0 7.3 75 32-109 25-111 (112)
19 KOG2838 Uncharacterized conser 94.5 0.028 6.1E-07 58.7 3.1 80 10-92 117-197 (401)
20 PF03931 Skp1_POZ: Skp1 family 94.2 0.18 3.9E-06 41.2 6.7 55 27-87 3-58 (62)
21 KOG1724 SCF ubiquitin ligase, 93.6 0.11 2.3E-06 50.9 5.1 91 32-132 13-128 (162)
22 PF07707 BACK: BTB And C-termi 91.7 0.042 9.1E-07 47.8 -0.5 67 214-308 35-101 (103)
23 smart00875 BACK BTB And C-term 87.7 1.2 2.5E-05 38.1 5.4 39 214-252 35-73 (101)
24 COG5201 SKP1 SCF ubiquitin lig 85.3 2.7 5.8E-05 39.8 6.6 93 27-131 4-122 (158)
25 KOG2838 Uncharacterized conser 85.1 0.72 1.6E-05 48.5 3.1 60 35-95 262-330 (401)
26 KOG0511 Ankyrin repeat protein 84.0 1.2 2.6E-05 48.8 4.3 76 34-112 301-379 (516)
27 KOG3840 Uncharaterized conserv 80.6 6.9 0.00015 42.0 8.2 112 19-133 90-222 (438)
28 PF01466 Skp1: Skp1 family, di 73.9 2.6 5.6E-05 36.0 2.4 34 92-131 10-43 (78)
29 KOG2714 SETA binding protein S 71.2 11 0.00025 42.1 7.1 82 27-112 13-99 (465)
30 PF04508 Pox_A_type_inc: Viral 70.0 5.2 0.00011 26.9 2.6 17 545-561 2-18 (23)
31 KOG0511 Ankyrin repeat protein 62.2 2.7 5.9E-05 46.1 0.2 70 13-89 136-210 (516)
32 TIGR01834 PHA_synth_III_E poly 53.9 16 0.00035 39.6 4.3 30 543-572 288-317 (320)
33 KOG1665 AFH1-interacting prote 53.5 48 0.0011 34.5 7.3 89 27-125 11-105 (302)
34 KOG2715 Uncharacterized conser 53.2 45 0.00097 33.2 6.8 99 25-131 21-122 (210)
35 PF08581 Tup_N: Tup N-terminal 52.6 22 0.00047 30.9 4.1 26 544-569 39-64 (79)
36 PF01166 TSC22: TSC-22/dip/bun 52.5 23 0.00049 29.2 3.9 33 535-567 12-44 (59)
37 KOG1987 Speckle-type POZ prote 51.6 18 0.00038 37.8 4.2 90 33-131 109-201 (297)
38 PF14077 WD40_alt: Alternative 51.2 8.4 0.00018 30.1 1.2 21 546-566 13-33 (48)
39 PF14363 AAA_assoc: Domain ass 50.2 9.3 0.0002 34.1 1.6 43 423-466 30-72 (98)
40 KOG4571 Activating transcripti 47.9 22 0.00047 38.0 4.0 43 530-572 248-290 (294)
41 PF10473 CENP-F_leu_zip: Leuci 35.3 61 0.0013 31.2 4.6 39 532-570 75-113 (140)
42 PF07989 Microtub_assoc: Micro 34.8 71 0.0015 27.5 4.5 37 532-568 38-74 (75)
43 COG2433 Uncharacterized conser 32.3 59 0.0013 38.1 4.6 67 386-454 299-367 (652)
44 PHA01750 hypothetical protein 31.1 79 0.0017 26.8 4.0 34 536-569 41-74 (75)
45 PF13815 Dzip-like_N: Iguana/D 29.9 2.4E+02 0.0053 25.9 7.6 54 481-567 64-117 (118)
46 COG3510 CmcI Cephalosporin hyd 29.6 40 0.00086 34.5 2.4 34 421-454 184-219 (237)
47 TIGR02894 DNA_bind_RsfA transc 28.9 92 0.002 30.7 4.7 34 535-568 102-135 (161)
48 PF13764 E3_UbLigase_R4: E3 ub 27.1 42 0.00091 40.9 2.5 76 342-448 252-335 (802)
49 PF10929 DUF2811: Protein of u 26.9 47 0.001 27.3 2.0 18 432-449 8-25 (57)
50 KOG2016 NEDD8-activating compl 26.8 1.7E+02 0.0037 33.4 6.9 61 390-450 344-434 (523)
51 KOG3713 Voltage-gated K+ chann 26.4 1.7E+02 0.0036 33.7 6.8 94 23-125 29-134 (477)
52 PF00170 bZIP_1: bZIP transcri 24.7 1.6E+02 0.0034 24.0 4.7 27 540-566 36-62 (64)
53 PF08172 CASP_C: CASP C termin 24.6 76 0.0017 33.3 3.6 27 544-570 86-112 (248)
54 PF09006 Surfac_D-trimer: Lung 24.2 1.5E+02 0.0032 23.4 4.1 27 541-567 3-29 (46)
55 PF07716 bZIP_2: Basic region 24.0 1.5E+02 0.0032 23.5 4.3 31 541-571 22-52 (54)
56 PF07407 Seadorna_VP6: Seadorn 22.6 88 0.0019 34.2 3.6 32 530-561 32-63 (420)
57 smart00338 BRLZ basic region l 22.0 1.6E+02 0.0034 24.0 4.3 33 535-567 31-63 (65)
58 PF10186 Atg14: UV radiation r 21.9 1.8E+02 0.0039 30.0 5.8 35 469-503 13-47 (302)
59 PF15294 Leu_zip: Leucine zipp 21.4 1.3E+02 0.0029 32.1 4.6 39 532-570 127-165 (278)
60 PHA03098 kelch-like protein; P 21.3 4.9E+02 0.011 29.5 9.6 44 284-327 57-103 (534)
61 PF12017 Tnp_P_element: Transp 20.9 1.2E+02 0.0027 31.5 4.2 26 542-567 16-41 (236)
62 PF12029 DUF3516: Domain of un 20.3 59 0.0013 36.8 1.8 40 412-452 199-238 (461)
63 KOG4603 TBP-1 interacting prot 20.1 1.5E+02 0.0031 29.8 4.2 26 546-571 118-143 (201)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=1.4e-88 Score=693.16 Aligned_cols=257 Identities=53% Similarity=0.874 Sum_probs=229.3
Q ss_pred CcccccccccCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCCcCCCCCCCccccccCCCChhhHHHHHHHHH
Q 006765 209 SDWWFEDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYARKYLPGLGRWQGGQSSNTRRVTSYSLTPAAVDQKVLLET 288 (632)
Q Consensus 209 ~dWW~EDl~~Ls~~lf~rvI~am~~~g~~~e~I~~aL~~Yakk~lpg~~~~~~~~~~~~~~~~~~~~~~~~~~qr~LLEt 288 (632)
+||||||++.|++++|+|||.+|+++|+++++|+++|++||+||+||+++...... ...........+||.+||+
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~-----~~~~~~~~~~~~~r~llEt 75 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSS-----SSAESSTSSENEQRELLET 75 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccccc-----ccccccchhHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999865421111 1122345678899999999
Q ss_pred HHHhcCCCCCCcchHHHHHHHHHHHhhCCCHHHHHHHHHHHhccccccccccccccCCCCC-CcccchHHHHHHHHHHhc
Q 006765 289 IENLLPEKKGKSFCRFLVGLLRVALILGVNEKCKESLERRIGMQLELATLDCLLIPNYSDS-DTLYNTDCVERIFHHFMT 367 (632)
Q Consensus 289 Iv~lLp~~k~~vs~~fLf~LLR~A~~l~as~~cr~~LE~rIg~qLd~AtldDLLiPs~~~~-~tlyDvd~V~ril~~Fl~ 367 (632)
||+|||.+++++||+|||+|||+|+++++|+.||.+||+|||+|||||||||||||+.+.. +|+||||+|+|||++||.
T Consensus 76 iV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~ 155 (258)
T PF03000_consen 76 IVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLS 155 (258)
T ss_pred HHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999993333 699999999999999999
Q ss_pred ccccccCCCCCCcccccCCCchhhhHHHHHHHHHHHHhccCCCCChhhHHHHHHhcCCCCCCcchhHHHHHHHHHHhCCC
Q 006765 368 SETIITSFSPASADVETSSSSGSLRKVSKLIDSYIAEVASDVNLKPGKIRSLAVALPDSSRPFHDGLYRALDIYFQAHPW 447 (632)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEvA~D~nL~~~kF~~Lae~lPd~aR~~~DgLYrAIDiYLK~Hp~ 447 (632)
+++..+............++.+++.+||||||+||+|||+|+||+|+||++|||+||++||++|||||||||||||+||+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ 235 (258)
T PF03000_consen 156 QEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHPG 235 (258)
T ss_pred cccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHccc
Confidence 86543311111122345678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhhhhcccccCCCCHHHh
Q 006765 448 LSERDKEELCNIIDYQKLSIDAC 470 (632)
Q Consensus 448 lse~Er~~lC~~ldcqKLS~EAc 470 (632)
||++||++||++|||||||+|||
T Consensus 236 ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 236 LSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred CCHHHHHHHHhhCCcccCCcccC
Confidence 99999999999999999999999
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=3.2e-26 Score=258.97 Aligned_cols=233 Identities=16% Similarity=0.215 Sum_probs=192.3
Q ss_pred hhhhhcCCCeeEEEEECCEEEEeeccccccccHHHHHhhhcccCCCCccceEEecCCCCCHHHHHHHHHhhcCCccccCc
Q 006765 16 DWYCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTP 95 (632)
Q Consensus 16 ~w~r~~g~~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~v~L~d~pggae~Felv~~FcYg~~i~it~ 95 (632)
.-+|.++.+|||+|.|++++|++||.||||+|+|||+||++...+. .+.+|+|.++ .+++++++++|+||++++|+.
T Consensus 28 ~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~-~~~~i~l~~v--~~~~l~~ll~y~Yt~~i~i~~ 104 (571)
T KOG4441|consen 28 NELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKES-KQKEINLEGV--DPETLELLLDYAYTGKLEISE 104 (571)
T ss_pred HHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccc-cceEEEEecC--CHHHHHHHHHHhhcceEEech
Confidence 3589999999999999999999999999999999999999874332 2689999998 579999999999999999999
Q ss_pred chHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhhhhhHHHHHhhcchhHHHHHHhhchhHHHHHHHHHHhcCCCCC
Q 006765 96 RNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQILSKCLNALSMMACTDPSL 175 (632)
Q Consensus 96 ~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~dsi~~L~sC~~L~p~Ae~l~Iv~RCidsLa~kac~d~~~ 175 (632)
+||+.|+.||.+|||++ |++.|++||.+++.++ ||.++..+|+.++.. ...+..-..+..++..
T Consensus 105 ~nVq~ll~aA~~lQi~~------v~~~C~~fL~~~l~~~---------Nclgi~~~a~~~~~~-~L~~~a~~~i~~~F~~ 168 (571)
T KOG4441|consen 105 DNVQELLEAASLLQIPE------VVDACCEFLESQLDPS---------NCLGIRRFAELHSCT-ELLEVADEYILQHFAE 168 (571)
T ss_pred HhHHHHHHHHHHhhhHH------HHHHHHHHHHhcCCHH---------HHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999765 777777777776653 2222222222333211
Q ss_pred CcccccccCCCCCCCCCccccccccCcccCCCCCcccccccccCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 006765 176 FGWPMMMYGSLQSPGGSILWNGINTGARIRSSESDWWFEDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYARKYLPG 255 (632)
Q Consensus 176 ~~~~~~~~~~~~s~~~~~~~~~~~~~~r~~~~~~dWW~EDl~~Ls~~lf~rvI~am~~~g~~~e~I~~aL~~Yakk~lpg 255 (632)
+ |=.||+..|+.+.+..+|+......-+|+.|+++++.|+++..+.
T Consensus 169 v----------------------------------~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~ 214 (571)
T KOG4441|consen 169 V----------------------------------SKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEE 214 (571)
T ss_pred H----------------------------------hccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhh
Confidence 1 114899999999999999999999999999999999999764432
Q ss_pred CCCcCCCCCCCccccccCCCChhhHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHhhCCCHHHHHHHHHHH
Q 006765 256 LGRWQGGQSSNTRRVTSYSLTPAAVDQKVLLETIENLLPEKKGKSFCRFLVGLLRVALILGVNEKCKESLERRI 329 (632)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~qr~LLEtIv~lLp~~k~~vs~~fLf~LLR~A~~l~as~~cr~~LE~rI 329 (632)
.+.+-..|++.|.. +.++..||...+.....+..++.|+..|..-.
T Consensus 215 ----------------------R~~~~~~ll~~vr~------~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 215 ----------------------REEHLPALLEAVRL------PLLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred ----------------------HHHHHHHHHHhcCc------cCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 23455667777764 67899999999999999999999999988766
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.93 E-value=1.6e-25 Score=252.78 Aligned_cols=230 Identities=13% Similarity=0.155 Sum_probs=179.2
Q ss_pred hhhhhhcCCCeeEEEEEC-CEEEEeeccccccccHHHHHhhhcccCCCCccceEEecCCCCCHHHHHHHHHhhcCCcccc
Q 006765 15 NDWYCSAGLPSDITVIVE-GINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEF 93 (632)
Q Consensus 15 ~~w~r~~g~~~DV~v~V~-~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~v~L~d~pggae~Felv~~FcYg~~i~i 93 (632)
-.-+|..+.+|||+|.|+ |++|++||.+|||+|+||++||+.+..+...+.+|+|+++ .+++|+.+++|+||++ |
T Consensus 16 l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v--~~~~~~~ll~y~Yt~~--i 91 (557)
T PHA02713 16 ISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMF--DKDAVKNIVQYLYNRH--I 91 (557)
T ss_pred HHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccC--CHHHHHHHHHHhcCCC--C
Confidence 334789999999999998 8999999999999999999999987432112468999999 5799999999999997 7
Q ss_pred CcchHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhhhhhHHHHHhhcchhHHHHHHhhchhHHHHHHHHHHhcCCC
Q 006765 94 TPRNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQILSKCLNALSMMACTDP 173 (632)
Q Consensus 94 t~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~dsi~~L~sC~~L~p~Ae~l~Iv~RCidsLa~kac~d~ 173 (632)
|.+||+.|+.||++|||++ |++.|++||.+.+.. .||.+++..|+.++... ..+....-++.++
T Consensus 92 ~~~nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l~~---------~NCl~i~~~~~~~~~~~-L~~~a~~~i~~~f 155 (557)
T PHA02713 92 SSMNVIDVLKCADYLLIDD------LVTDCESYIKDYTNH---------DTCIYMYHRLYEMSHIP-IVKYIKRMLMSNI 155 (557)
T ss_pred CHHHHHHHHHHHHHHCHHH------HHHHHHHHHHhhCCc---------cchHHHHHHHHhccchH-HHHHHHHHHHHHH
Confidence 8999999999999999999 999999999999954 58988887777765421 2233223334443
Q ss_pred CCCcccccccCCCCCCCCCccccccccCcccCCCCCcccccccccCChHHHHHHHHHHH-hcCCChhhHHHHHHHHHHhh
Q 006765 174 SLFGWPMMMYGSLQSPGGSILWNGINTGARIRSSESDWWFEDLSYLSVGLFERLIKTME-ARGMRPENLAGAIMYYARKY 252 (632)
Q Consensus 174 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~r~~~~~~dWW~EDl~~Ls~~lf~rvI~am~-~~g~~~e~I~~aL~~Yakk~ 252 (632)
..+. . .|||..|+.+.+..+|+... ....+|+.|.++++.|.++.
T Consensus 156 ~~v~-------------------------------~---~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d 201 (557)
T PHA02713 156 PTLI-------------------------------T---TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYN 201 (557)
T ss_pred HHHh-------------------------------C---ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcC
Confidence 2211 0 37899999999999999977 46778999999999999754
Q ss_pred cCCCCCcCCCCCCCccccccCCCChhhHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHhhCCCHHHHHHHHHH
Q 006765 253 LPGLGRWQGGQSSNTRRVTSYSLTPAAVDQKVLLETIENLLPEKKGKSFCRFLVGLLRVALILGVNEKCKESLERR 328 (632)
Q Consensus 253 lpg~~~~~~~~~~~~~~~~~~~~~~~~~~qr~LLEtIv~lLp~~k~~vs~~fLf~LLR~A~~l~as~~cr~~LE~r 328 (632)
... ......||+.|.. +.++.++++ .+.....+..++.|+..|+..
T Consensus 202 ~~~-----------------------r~~~~~ll~~VR~------~~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a 247 (557)
T PHA02713 202 YIT-----------------------EEQLLCILSCIDI------QNLDKKSRL-LLYSNKTINMYPSCIQFLLDN 247 (557)
T ss_pred HHH-----------------------HHHHhhhHhhhhH------hhcchhhhh-hhcchHHHHhhHHHHHHHhhh
Confidence 221 1223478888874 335666776 555667778899999988664
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.90 E-value=2.8e-24 Score=238.72 Aligned_cols=174 Identities=10% Similarity=0.071 Sum_probs=142.9
Q ss_pred hhhcCCCeeEEEEECCEEEEeeccccccccHHHHHhhhcccCCCCccceEEe--cCCCCCHHHHHHHHHhhcCCccccCc
Q 006765 18 YCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTEL--EDFPGGPGTFLIAAKFCYGHRVEFTP 95 (632)
Q Consensus 18 ~r~~g~~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~v~L--~d~pggae~Felv~~FcYg~~i~it~ 95 (632)
+|.+|.+|||+. |.|.+|++||.||||+|+|||+||+++..++ +.+|.+ .++ .+++|+.+++|+|||+|.||.
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es--~~~v~~~~~~v--~~~~l~~lldy~YTg~l~it~ 90 (480)
T PHA02790 16 LSMTKKFKTIIE-AIGGNIIVNSTILKKLSPYFRTHLRQKYTKN--KDPVTRVCLDL--DIHSLTSIVIYSYTGKVYIDS 90 (480)
T ss_pred HHhhhhhceEEE-EcCcEEeeehhhhhhcCHHHHHHhcCCcccc--ccceEEEecCc--CHHHHHHHHHhheeeeEEEec
Confidence 678999999876 5566999999999999999999999875433 234555 377 579999999999999999999
Q ss_pred chHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhhhhhHHHHHhhcchhHHHHHHhhchhHHHHHHHHHHh----cC
Q 006765 96 RNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQILSKCLNALSMMA----CT 171 (632)
Q Consensus 96 ~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~dsi~~L~sC~~L~p~Ae~l~Iv~RCidsLa~ka----c~ 171 (632)
+||+.|+.||.+|||++ |++.|++||.+++.+ .||.++..+|+.|++ +.|..+| +.
T Consensus 91 ~nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l~~---------~NCl~i~~~A~~y~~-----~~L~~~a~~fi~~ 150 (480)
T PHA02790 91 HNVVNLLRASILTSVEF------IIYTCINFILRDFRK---------EYCVECYMMGIEYGL-----SNLLCHTKDFIAK 150 (480)
T ss_pred ccHHHHHHHHHHhChHH------HHHHHHHHHHhhCCc---------chHHHHHHHHHHhCH-----HHHHHHHHHHHHH
Confidence 99999999999999999 999999999999965 599999999999986 3444444 44
Q ss_pred CCCCCcccccccCCCCCCCCCccccccccCcccCCCCCcccccccccCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 006765 172 DPSLFGWPMMMYGSLQSPGGSILWNGINTGARIRSSESDWWFEDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYARK 251 (632)
Q Consensus 172 d~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~r~~~~~~dWW~EDl~~Ls~~lf~rvI~am~~~g~~~e~I~~aL~~Yakk 251 (632)
++..+. . .=+|||..|++ ..+|++.....-+|+.|.++++.|+++
T Consensus 151 nF~~v~-------------------------------~-~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~ 195 (480)
T PHA02790 151 HFLELE-------------------------------D-DIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMK 195 (480)
T ss_pred hHHHHh-------------------------------c-ccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHh
Confidence 432221 0 00368888886 578988888889999999999999974
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.89 E-value=8.1e-23 Score=228.47 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=176.7
Q ss_pred cCCCeeEEEEE--CCEEEEeeccccccccHHHHHhhhcccCCCCccceEEecCCCCCHHHHHHHHHhhcCCccccCcchH
Q 006765 21 AGLPSDITVIV--EGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRNI 98 (632)
Q Consensus 21 ~g~~~DV~v~V--~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~v~L~d~pggae~Felv~~FcYg~~i~it~~NV 98 (632)
+|.+|||+|.| +|++|++||.+|+++|+||++||++... +.+|+|++ .+++|+.+++|+|||+++|+.+||
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~----~~~i~l~~---~~~~~~~~l~y~Ytg~~~i~~~~~ 78 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK----ENEINLNI---DYDSFNEVIKYIYTGKINITSNNV 78 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC----CceEEecC---CHHHHHHHHHHhcCCceEEcHHHH
Confidence 78999999998 9999999999999999999999987654 25788887 469999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhhhhhHHHHHhhcchhHHHHHHhhch---hHHHHHHHHHHhcCCCCC
Q 006765 99 VTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQI---LSKCLNALSMMACTDPSL 175 (632)
Q Consensus 99 ~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~dsi~~L~sC~~L~p~Ae~l~I---v~RCidsLa~kac~d~~~ 175 (632)
..|+.||++|||++ |+..|++||.+.+. ..||..++.+|+.+++ .+.|.+-|+... ..
T Consensus 79 ~~ll~~A~~l~~~~------l~~~C~~~l~~~l~---------~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf----~~ 139 (534)
T PHA03098 79 KDILSIANYLIIDF------LINLCINYIIKIID---------DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNI----EL 139 (534)
T ss_pred HHHHHHHHHhCcHH------HHHHHHHHHHHhCC---------HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----HH
Confidence 99999999999999 99999999999884 5699999999999874 344444444332 11
Q ss_pred CcccccccCCCCCCCCCccccccccCcccCCCCCcccccccccCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 006765 176 FGWPMMMYGSLQSPGGSILWNGINTGARIRSSESDWWFEDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYARKYLPG 255 (632)
Q Consensus 176 ~~~~~~~~~~~~s~~~~~~~~~~~~~~r~~~~~~dWW~EDl~~Ls~~lf~rvI~am~~~g~~~e~I~~aL~~Yakk~lpg 255 (632)
+. + .+|+..|+.+.++.+|++......+|+.|.++++.|+++....
T Consensus 140 v~-------------------------~---------~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~ 185 (534)
T PHA03098 140 IY-------------------------N---------DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNN 185 (534)
T ss_pred Hh-------------------------c---------CchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhh
Confidence 10 0 3688999999999999999888889999999999999654221
Q ss_pred CCCcCCCCCCCccccccCCCChhhHHHHHHHHHHHHhcCCCCCCcchHHHHHHHH------HHHhhCCCHHHHHHHHHHH
Q 006765 256 LGRWQGGQSSNTRRVTSYSLTPAAVDQKVLLETIENLLPEKKGKSFCRFLVGLLR------VALILGVNEKCKESLERRI 329 (632)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~qr~LLEtIv~lLp~~k~~vs~~fLf~LLR------~A~~l~as~~cr~~LE~rI 329 (632)
....-..|++.|.. +.++..+|..+.+ ....+ .+..|+..++...
T Consensus 186 ----------------------r~~~~~~ll~~vR~------~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 236 (534)
T PHA03098 186 ----------------------KYKDICLILKVLRI------TFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKK 236 (534)
T ss_pred ----------------------hHhHHHHHHhhccc------cccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHH
Confidence 12344578888875 6678888888775 22333 6777887766544
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.67 E-value=1.2e-16 Score=141.35 Aligned_cols=104 Identities=23% Similarity=0.378 Sum_probs=90.6
Q ss_pred hhhcCCCeeEEEEEC-CEEEEeeccccccccHHHHHhhhccc-CCCCccceEEecCCCCCHHHHHHHHHhhcCCccccC-
Q 006765 18 YCSAGLPSDITVIVE-GINFHLHKFPLVSKCAKIARIYEESQ-STHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFT- 94 (632)
Q Consensus 18 ~r~~g~~~DV~v~V~-~~~F~lHK~vLas~S~yfr~lf~~~~-e~~~~~~~v~L~d~pggae~Felv~~FcYg~~i~it- 94 (632)
++.++.+||++|.|+ +.+|++||.+|+++|+||++||.... .+. ...+|.+++++ +++|+.+++|+|++.+.++
T Consensus 4 ~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~-~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 4 LFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKES-TVPEISLPDVS--PEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTS-SEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-
T ss_pred HHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccc-ccccccccccc--ccccccccccccCCcccCCH
Confidence 457889999999999 89999999999999999999999872 222 13578889995 7999999999999999998
Q ss_pred cchHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHh
Q 006765 95 PRNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKN 130 (632)
Q Consensus 95 ~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~ 130 (632)
.+|+..++..|++|+|++ |...|++||.+.
T Consensus 81 ~~~~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 999999999999999998 999999999875
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.55 E-value=7.6e-15 Score=122.39 Aligned_cols=90 Identities=26% Similarity=0.436 Sum_probs=80.3
Q ss_pred eEEEEECCEEEEeeccccccccHHHHHhhhcccCCCCccceEEecCCCCCHHHHHHHHHhhcCCccccCcchHHHHHHHh
Q 006765 26 DITVIVEGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRNIVTVYAAA 105 (632)
Q Consensus 26 DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~v~L~d~pggae~Felv~~FcYg~~i~it~~NV~~L~cAA 105 (632)
||++.|+|.+|++||.+|+++|+||++||....... ....+.++++ .+++|+.+++|+|++++.++..|+..++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~-~~~~i~l~~~--~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKES-KKSEIYLDDV--SPEDFRALLEFLYTGKLDLPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccC-CCCEEEecCC--CHHHHHHHHHeecCceeecCHHHHHHHHHHH
Confidence 789999999999999999999999999998753321 1468888887 5799999999999999999999999999999
Q ss_pred hhhcCCCCCCcchHHHHHH
Q 006765 106 DYLEMTDEDDEDNLVSQSE 124 (632)
Q Consensus 106 ~~LqMte~~~~~NL~~~ce 124 (632)
++++|++ |+..|+
T Consensus 78 ~~~~~~~------l~~~c~ 90 (90)
T smart00225 78 DYLQIPG------LVELCE 90 (90)
T ss_pred HHHCcHH------HHhhhC
Confidence 9999998 888874
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.27 E-value=2.3e-11 Score=132.07 Aligned_cols=185 Identities=21% Similarity=0.294 Sum_probs=146.5
Q ss_pred cchhhhhhcCCCeeEEEEECC-----EEEEeeccccccccHHHHHhhhcccCCCCccceEEecCCCCCHHHHHHHHHhhc
Q 006765 13 EGNDWYCSAGLPSDITVIVEG-----INFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCY 87 (632)
Q Consensus 13 ~~~~w~r~~g~~~DV~v~V~~-----~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~v~L~d~pggae~Felv~~FcY 87 (632)
+.++-+..+...+||.+.|++ +.||+||++|+..|.-|.+||.....++ ...+|.++|+ .|.+|...++|+|
T Consensus 103 er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~-~s~ei~lpdv--epaaFl~~L~flY 179 (521)
T KOG2075|consen 103 ERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAED-ASLEIRLPDV--EPAAFLAFLRFLY 179 (521)
T ss_pred HhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccc-cCceeecCCc--ChhHhHHHHHHHh
Confidence 344446678999999999983 7999999999999999999998864332 1479999999 5799999999999
Q ss_pred CCccccCcchHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhhhhhHHHHHhhcchhHHHHHHhhchhHHHHHHHHH
Q 006765 88 GHRVEFTPRNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQILSKCLNALSM 167 (632)
Q Consensus 88 g~~i~it~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~dsi~~L~sC~~L~p~Ae~l~Iv~RCidsLa~ 167 (632)
+-.+.+.++||..++-||.-.-.+. |...|.+||+..+.. ...+.-|-+|. .+.++-.+.++|++.|..
T Consensus 180 sdev~~~~dtvi~tl~~AkKY~Vpa------Ler~CVkflr~~l~~--~naf~~L~q~A---~lf~ep~Li~~c~e~id~ 248 (521)
T KOG2075|consen 180 SDEVKLAADTVITTLYAAKKYLVPA------LERQCVKFLRKNLMA--DNAFLELFQRA---KLFDEPSLISICLEVIDK 248 (521)
T ss_pred cchhhhhHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHhcCC--hHHHHHHHHHH---HhhcCHHHHHHHHHHhhh
Confidence 9999999999999999998777776 999999999998865 44566666663 345566789999999875
Q ss_pred Hh--cCCCCCCcccccccCCCCCCCCCccccccccCcccCCCCCcccccccccCChHHHHHHHHHHHhcCCChhhHHHHH
Q 006765 168 MA--CTDPSLFGWPMMMYGSLQSPGGSILWNGINTGARIRSSESDWWFEDLSYLSVGLFERLIKTMEARGMRPENLAGAI 245 (632)
Q Consensus 168 ka--c~d~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~r~~~~~~dWW~EDl~~Ls~~lf~rvI~am~~~g~~~e~I~~aL 245 (632)
.. |.++ =||-|+-.+ .++|..|+..... .+++-.+++++
T Consensus 249 ~~~~al~~-------------------------------------EGf~did~~-~dt~~evl~r~~l-~~~e~~lfeA~ 289 (521)
T KOG2075|consen 249 SFEDALTP-------------------------------------EGFCDIDST-RDTYEEVLRRDTL-EAREFRLFEAA 289 (521)
T ss_pred HHHhhhCc-------------------------------------cceeehhhH-HHHHHHHHhhccc-chhHHHHHHHH
Confidence 54 1111 046666555 8888888876543 35788999999
Q ss_pred HHHHH
Q 006765 246 MYYAR 250 (632)
Q Consensus 246 ~~Yak 250 (632)
..|+.
T Consensus 290 lkw~~ 294 (521)
T KOG2075|consen 290 LKWAE 294 (521)
T ss_pred Hhhcc
Confidence 99985
No 9
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.12 E-value=2.9e-10 Score=121.15 Aligned_cols=125 Identities=14% Similarity=0.208 Sum_probs=94.6
Q ss_pred hhhhcCCCeeEEEEECCEEEEeeccccccccHHHHHhhhccc-CCCCccceEEecCCCCCHHHHHHHHHhhcCCccccCc
Q 006765 17 WYCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQ-STHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTP 95 (632)
Q Consensus 17 w~r~~g~~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~-e~~~~~~~v~L~d~pggae~Felv~~FcYg~~i~it~ 95 (632)
.++......||++.|++..|++||.+||++|.|||+|+-.++ |+. +..|.|++- .+++|..+++|+|+|++.++.
T Consensus 37 ~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~--q~~ipLq~t--~~eAF~~lLrYiYtg~~~l~~ 112 (620)
T KOG4350|consen 37 ELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESH--QQLIPLQET--NSEAFRALLRYIYTGKIDLAG 112 (620)
T ss_pred HHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhh--hcccccccc--cHHHHHHHHHHHhhcceeccc
Confidence 467788899999999999999999999999999999998774 443 567777665 579999999999999999876
Q ss_pred chHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhhhhhHHHHHhhcchhHHHHHHhhch
Q 006765 96 RNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQI 157 (632)
Q Consensus 96 ~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~dsi~~L~sC~~L~p~Ae~l~I 157 (632)
..-..++ +||.|...|+=-.|-....+||.+.+ .++|--.++..|--|.+
T Consensus 113 ~~ed~ll---d~LslAh~Ygf~~Le~aiSeYl~~iL---------~~~NvCmifdaA~ly~l 162 (620)
T KOG4350|consen 113 VEEDILL---DYLSLAHRYGFIQLETAISEYLKEIL---------KNENVCMIFDAAYLYQL 162 (620)
T ss_pred chHHHHH---HHHHHHHhcCcHHHHHHHHHHHHHHH---------cccceeeeeeHHHHhcc
Confidence 4433332 44444444444449999999999976 44554445555555543
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.88 E-value=2.4e-09 Score=105.42 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=107.4
Q ss_pred CCCcchhhcch---hhhhhcCCCeeEEEEEC---CEEEEeeccccccccHHHHHhhhcccCCCCccceEEecCCCCCHHH
Q 006765 5 GKVSGFHREGN---DWYCSAGLPSDITVIVE---GINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGT 78 (632)
Q Consensus 5 sk~~~f~~~~~---~w~r~~g~~~DV~v~V~---~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~v~L~d~pggae~ 78 (632)
|-||+|..+-. +-+.....++||++.++ +..+++||+|||++|++.+ |.+..++. ..+..+.|. ++++
T Consensus 44 Ss~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dek--se~~~~dDa--d~Ea 117 (280)
T KOG4591|consen 44 SSPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEK--SEELDLDDA--DFEA 117 (280)
T ss_pred CCchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcc--hhhhccccc--CHHH
Confidence 78999988743 23567889999999998 5789999999999999874 44433222 356677787 6799
Q ss_pred HHHHHHhhcCCccccCcchHH--HHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhhhhhHHHHHhhcchhHHHHHHhhc
Q 006765 79 FLIAAKFCYGHRVEFTPRNIV--TVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQ 156 (632)
Q Consensus 79 Felv~~FcYg~~i~it~~NV~--~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~dsi~~L~sC~~L~p~Ae~l~ 156 (632)
|..+++++||-.|++..+.+. .|...|.-+|+.- |.++|+.=+...+ ...||..+..+||+++
T Consensus 118 ~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l---------~V~NCIk~Ye~AEe~n 182 (280)
T KOG4591|consen 118 FHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLEL------LKERCEKGLGALL---------HVDNCIKFYEFAEELN 182 (280)
T ss_pred HHHhheeeeccccccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHh---------hHhhHHHHHHHHHHhh
Confidence 999999999999998877664 5788899999987 9999999888877 4679999999999986
Q ss_pred h
Q 006765 157 I 157 (632)
Q Consensus 157 I 157 (632)
.
T Consensus 183 ~ 183 (280)
T KOG4591|consen 183 A 183 (280)
T ss_pred H
Confidence 3
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.61 E-value=1.2e-07 Score=101.61 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=108.5
Q ss_pred hhcCCCeeEEEEECCEEEEeeccccccccHHHHHhhhcc-cCCCCccceEEecCCCCCHHHHHHHHHhhcCCccccCcch
Q 006765 19 CSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEES-QSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRN 97 (632)
Q Consensus 19 r~~g~~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~~~v~L~d~pggae~Felv~~FcYg~~i~it~~N 97 (632)
-.+|.-+||+|.+-|.+.++||.-| ..|+||..||... +|++..-..++|+|-..+..+|..++.=.|..+|+|..+-
T Consensus 64 f~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~d 142 (488)
T KOG4682|consen 64 FLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSD 142 (488)
T ss_pred HhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHH
Confidence 4578999999999999999999655 7799999999876 4433112345666655578999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhhhhhHHHHHhhcchhHHHHHHhhchh---HHHHHHHH
Q 006765 98 IVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQIL---SKCLNALS 166 (632)
Q Consensus 98 V~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~dsi~~L~sC~~L~p~Ae~l~Iv---~RCidsLa 166 (632)
|..+++||.+||.+. |+++|.+-+.+.+.+ ++-.+....+..||+. .+|.+-|-
T Consensus 143 v~gvlAaA~~lqldg------l~qrC~evMie~lsp---------kta~~yYea~ckYgle~vk~kc~ewl~ 199 (488)
T KOG4682|consen 143 VVGVLAAACLLQLDG------LIQRCGEVMIETLSP---------KTACGYYEAACKYGLESVKKKCLEWLL 199 (488)
T ss_pred HHHHHHHHHHHHHhh------HHHHHHHHHHHhcCh---------hhhhHhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999998 999999999999965 4777788888888863 44544444
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.35 E-value=7.2e-07 Score=102.20 Aligned_cols=126 Identities=17% Similarity=0.259 Sum_probs=99.5
Q ss_pred CeeEEEEECCEEEEeeccccccccHHHHHhhhcc-cCCCCccceEEecCCCCCHHHHHHHHHhhc-CCcccc-----Ccc
Q 006765 24 PSDITVIVEGINFHLHKFPLVSKCAKIARIYEES-QSTHIKTFTTELEDFPGGPGTFLIAAKFCY-GHRVEF-----TPR 96 (632)
Q Consensus 24 ~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~~~v~L~d~pggae~Felv~~FcY-g~~i~i-----t~~ 96 (632)
.|||++. +|..|++||.+|.+++.||..||... .|.+ .+.....|-.+|.++.|++|.| +-+.++ ..+
T Consensus 712 d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~s----S~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~d 786 (1267)
T KOG0783|consen 712 DTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMESS----SITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESD 786 (1267)
T ss_pred eEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhhc----cceeecCcchHHHHHHHHHHHHccchHHHHhccchhh
Confidence 3444444 88999999999999999999999875 4443 3555567767899999999999 444433 223
Q ss_pred hHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhhhhhHHHHHhhcchhHHHHHHhhc---hhHHHHHHHHHHh
Q 006765 97 NIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVLRAWKDCILALQSSESVLPRADRLQ---ILSKCLNALSMMA 169 (632)
Q Consensus 97 NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~dsi~~L~sC~~L~p~Ae~l~---Iv~RCidsLa~ka 169 (632)
=+..++..|+-|=+++ |.+.||.-|.+.+ .|++|..++.+|-.|+ +-.||+|=|...+
T Consensus 787 F~~~il~iaDqlli~~------Lk~Ice~~ll~kl---------~lk~~~~llefaamY~ak~L~~~C~dfic~N~ 847 (1267)
T KOG0783|consen 787 FMFEILSIADQLLILE------LKSICEQSLLRKL---------NLKTLPTLLEFAAMYHAKELYSRCIDFICHNI 847 (1267)
T ss_pred hhHHHHHHHHHHHHHH------HHHHHHHHHHhHh---------cccchHHHHHHHHHhhHHHHHHHHHHHHHHhH
Confidence 3567788888888888 9999999999988 7999999999999986 6789998776554
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.14 E-value=3.2e-06 Score=97.09 Aligned_cols=67 Identities=24% Similarity=0.343 Sum_probs=55.2
Q ss_pred CCCeeEEEEECCEEEEeeccccccccHHHHHhhhcccCC-----------CCccceEEecCCCCCHHHHHHHHHhhcCCc
Q 006765 22 GLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQST-----------HIKTFTTELEDFPGGPGTFLIAAKFCYGHR 90 (632)
Q Consensus 22 g~~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~e~-----------~~~~~~v~L~d~pggae~Felv~~FcYg~~ 90 (632)
+-..|||+.||+.-||+|||+|+++|++||+||.....+ ....++|.+.++|| .+||+++.|+||..
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p--~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPP--LMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCH--HHHHHHHHHHhccc
Confidence 356799999999999999999999999999999764211 11135677889985 99999999999975
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.74 E-value=2.5e-05 Score=82.79 Aligned_cols=93 Identities=20% Similarity=0.349 Sum_probs=77.4
Q ss_pred EEEEEC------CEEEEeeccccccccHHHHHhhhc---c-cCCCCccceEEec-CCCCCHHHHHHHHHhhcCCccccCc
Q 006765 27 ITVIVE------GINFHLHKFPLVSKCAKIARIYEE---S-QSTHIKTFTTELE-DFPGGPGTFLIAAKFCYGHRVEFTP 95 (632)
Q Consensus 27 V~v~V~------~~~F~lHK~vLas~S~yfr~lf~~---~-~e~~~~~~~v~L~-d~pggae~Felv~~FcYg~~i~it~ 95 (632)
|+|+|- .+.|.+.+.+|.+.=+||+..+.. . .+.. ...|..+ |+ .+|+-+++|+++....||+
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~--~idisVhCDv----~iF~WLm~yv~~~~p~l~~ 74 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWE--EIDISVHCDV----HIFEWLMRYVKGEPPSLTP 74 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCC--CcceEEecCh----hHHHHHHHHhhcCCCcCCc
Confidence 466662 268999999999999999999964 2 2111 2344445 77 7999999999999999999
Q ss_pred chHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhh
Q 006765 96 RNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNV 131 (632)
Q Consensus 96 ~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v 131 (632)
+||++++-.++||||++ |++.|-.|+...+
T Consensus 75 ~NvvsIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 75 SNVVSILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred CcEEEeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 99999999999999999 9999999998876
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.00 E-value=0.0013 Score=58.91 Aligned_cols=81 Identities=16% Similarity=0.300 Sum_probs=61.3
Q ss_pred EEEEE-CCEEEEeeccccccccHHHHHhhhcccCCCCccceEEecCCCCCHHHHHHHHHhhcCCc---------------
Q 006765 27 ITVIV-EGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHR--------------- 90 (632)
Q Consensus 27 V~v~V-~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~v~L~d~pggae~Felv~~FcYg~~--------------- 90 (632)
|+++- +|+.|.+.+.+. ..|+-++.|+.+.....+....|.|++|+| .+++.|++||+--+
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~--~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTS--KILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCH--HHHHHHHHHHHHcccCCCCccccccccHH
Confidence 55554 789999999855 689999999986422211125789999964 99999999998321
Q ss_pred ----cccCcchHHHHHHHhhhhcC
Q 006765 91 ----VEFTPRNIVTVYAAADYLEM 110 (632)
Q Consensus 91 ----i~it~~NV~~L~cAA~~LqM 110 (632)
+.+..+++..|+.||.||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11667789999999999986
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.64 E-value=0.0013 Score=57.53 Aligned_cols=83 Identities=12% Similarity=0.184 Sum_probs=60.6
Q ss_pred EEEEECCEEEEeeccccc-cccHHHHHhhhcc--cCCCCccceEEecCCCCCHHHHHHHHHhhcC-CccccC-cchHHHH
Q 006765 27 ITVIVEGINFHLHKFPLV-SKCAKIARIYEES--QSTHIKTFTTELEDFPGGPGTFLIAAKFCYG-HRVEFT-PRNIVTV 101 (632)
Q Consensus 27 V~v~V~~~~F~lHK~vLa-s~S~yfr~lf~~~--~e~~~~~~~v~L~d~pggae~Felv~~FcYg-~~i~it-~~NV~~L 101 (632)
|+|.|||+.|.+-+..|. -...+|.+|+... .........+-| | ..|+.|+.|++|.-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-D--Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-D--RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-S--S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-c--cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 4578999999853 111111345654 3 367999999999999 777764 6788889
Q ss_pred HHHhhhhcCCC
Q 006765 102 YAAADYLEMTD 112 (632)
Q Consensus 102 ~cAA~~LqMte 112 (632)
+..|+|.++.+
T Consensus 78 ~~Ea~fy~l~~ 88 (94)
T PF02214_consen 78 LEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHT-HH
T ss_pred HHHHHHcCCCc
Confidence 99999999987
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.014 Score=59.94 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=77.0
Q ss_pred EEEEECCEEEEeeccccccccHHHHHhhhccc--CCCCccceEEecCCCCCHHHHHHHHHhhcCCcccc--CcchHHHHH
Q 006765 27 ITVIVEGINFHLHKFPLVSKCAKIARIYEESQ--STHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEF--TPRNIVTVY 102 (632)
Q Consensus 27 V~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~--e~~~~~~~v~L~d~pggae~Felv~~FcYg~~i~i--t~~NV~~L~ 102 (632)
|-+.|||..|...|.-|.-..|+|+.|+.... +.+ ....|-|. -.|+=|++|++|+=.|.+.| +..++.+|+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d-~s~~IFID---RSpKHF~~ILNfmRdGdv~LPe~~kel~El~ 82 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKD-ESGCIFID---RSPKHFDTILNFMRDGDVDLPESEKELKELL 82 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccC-CcCcEEec---CChhHHHHHHHhhhcccccCccchHHHHHHH
Confidence 45889999999999999999999999998753 222 12335543 35699999999999777766 556778999
Q ss_pred HHhhhhcCCCCCCcchHHHHHHHHHHHhh
Q 006765 103 AAADYLEMTDEDDEDNLVSQSESFFHKNV 131 (632)
Q Consensus 103 cAA~~LqMte~~~~~NL~~~ce~FL~~~v 131 (632)
.=|+|..+++ |++.|+.=+....
T Consensus 83 ~EA~fYlL~~------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 83 REAEFYLLDG------LVELCQSAIARLI 105 (230)
T ss_pred HHHHHhhHHH------HHHHHHHHhhhcc
Confidence 9999999998 9999998777754
No 18
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=95.03 E-value=0.095 Score=47.01 Aligned_cols=75 Identities=15% Similarity=0.279 Sum_probs=59.2
Q ss_pred CCEEEEeeccccccccHHHHHhhhcc-cCCCCccceEEecCCCCCHHHHHHHHHhh-----cCC------ccccCcchHH
Q 006765 32 EGINFHLHKFPLVSKCAKIARIYEES-QSTHIKTFTTELEDFPGGPGTFLIAAKFC-----YGH------RVEFTPRNIV 99 (632)
Q Consensus 32 ~~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~~~v~L~d~pggae~Felv~~Fc-----Yg~------~i~it~~NV~ 99 (632)
+|.+|-+-|- +|--||-+|+|+.+. ........+|.+++|| +..++.+..|. |++ +++|-++-+.
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 6899998775 677899999999864 2222225789999997 69999998875 443 3678899999
Q ss_pred HHHHHhhhhc
Q 006765 100 TVYAAADYLE 109 (632)
Q Consensus 100 ~L~cAA~~Lq 109 (632)
.|+.||+||+
T Consensus 102 eLL~aAn~Le 111 (112)
T KOG3473|consen 102 ELLMAANYLE 111 (112)
T ss_pred HHHHHhhhhc
Confidence 9999999997
No 19
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.46 E-value=0.028 Score=58.65 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=59.6
Q ss_pred hhhcchhhhhhcCCCeeEEEEECCEEEEeeccccccccHHHHHhhhcccCCC-CccceEEecCCCCCHHHHHHHHHhhcC
Q 006765 10 FHREGNDWYCSAGLPSDITVIVEGINFHLHKFPLVSKCAKIARIYEESQSTH-IKTFTTELEDFPGGPGTFLIAAKFCYG 88 (632)
Q Consensus 10 f~~~~~~w~r~~g~~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~e~~-~~~~~v~L~d~pggae~Felv~~FcYg 88 (632)
|+++-..-| ......||-|......|++||..|+++|++|+-+.....+.. +....++.-+| .-++|+..+.+.|+
T Consensus 117 f~kD~ad~y-e~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~--dm~~feafLh~l~t 193 (401)
T KOG2838|consen 117 FLKDFADGY-ERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGF--DMDAFEAFLHSLIT 193 (401)
T ss_pred HHHHHhhhh-heeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhcc--ChHHHHHHHHHHHh
Confidence 555533322 345677999999999999999999999999998876654332 11345666677 45899999999999
Q ss_pred Cccc
Q 006765 89 HRVE 92 (632)
Q Consensus 89 ~~i~ 92 (632)
+..-
T Consensus 194 gEfg 197 (401)
T KOG2838|consen 194 GEFG 197 (401)
T ss_pred cccc
Confidence 8763
No 20
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.18 E-value=0.18 Score=41.18 Aligned_cols=55 Identities=11% Similarity=0.282 Sum_probs=43.3
Q ss_pred EEEEE-CCEEEEeeccccccccHHHHHhhhcccCCCCccceEEecCCCCCHHHHHHHHHhhc
Q 006765 27 ITVIV-EGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCY 87 (632)
Q Consensus 27 V~v~V-~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~v~L~d~pggae~Felv~~FcY 87 (632)
|+|.- ||+.|.+.+.+ |-.|+.++.|+.+..... ..|.|++|+ +.+++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~~-a~~S~~i~~ml~~~~~~~---~~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREA-AKQSKTIKNMLEDLGDED---EPIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHH-HTTSHHHHHHHHCTCCCG---TEEEETTS---HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhhhcccc---cccccCccC--HHHHHHHHHHHH
Confidence 45555 78999998875 458999999998654332 279999995 599999999997
No 21
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.11 Score=50.87 Aligned_cols=91 Identities=13% Similarity=0.214 Sum_probs=70.6
Q ss_pred CCEEEEeeccccccccHHHHHhhhcccCCCCccceEEecCCCCCHHHHHHHHHhhcCCcc--------------------
Q 006765 32 EGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHRV-------------------- 91 (632)
Q Consensus 32 ~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~v~L~d~pggae~Felv~~FcYg~~i-------------------- 91 (632)
+|+.|.+-.. .|..|.-++.++.+..-... ...|-|+.|. +.+|.+|++|||--+-
T Consensus 13 DG~~f~ve~~-~a~~s~~i~~~~~~~~~~~~-~~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~W 88 (162)
T KOG1724|consen 13 DGEIFEVEEE-VARQSQTISAHMIEDGCADE-NDPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEW 88 (162)
T ss_pred CCceeehhHH-HHHHhHHHHHHHHHcCCCcc-CCccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHH
Confidence 7899999876 45779999999876422210 1368888885 5999999999996331
Q ss_pred -----ccCcchHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh
Q 006765 92 -----EFTPRNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNVL 132 (632)
Q Consensus 92 -----~it~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~ 132 (632)
.+...++..|.-||.||+|.. |+..|+.....++-
T Consensus 89 D~~Flk~d~~tLfdli~AAnyLdi~g------Ll~~~ck~va~mik 128 (162)
T KOG1724|consen 89 DAEFLKVDQGTLFDLILAANYLDIKG------LLDLTCKTVANMIK 128 (162)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcccHH------HHHHHHHHHHHHHc
Confidence 234457899999999999998 99999999988773
No 22
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=91.71 E-value=0.042 Score=47.83 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=46.7
Q ss_pred cccccCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCCcCCCCCCCccccccCCCChhhHHHHHHHHHHHHhc
Q 006765 214 EDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYARKYLPGLGRWQGGQSSNTRRVTSYSLTPAAVDQKVLLETIENLL 293 (632)
Q Consensus 214 EDl~~Ls~~lf~rvI~am~~~g~~~e~I~~aL~~Yakk~lpg~~~~~~~~~~~~~~~~~~~~~~~~~~qr~LLEtIv~lL 293 (632)
+++..||++.+..+++.......++..|..+++.|+++..+. .......|++.|..
T Consensus 35 ~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~----------------------r~~~~~~Ll~~iR~-- 90 (103)
T PF07707_consen 35 DEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPEN----------------------REEHLKELLSCIRF-- 90 (103)
T ss_dssp HHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHH----------------------HTTTHHHHHCCCHH--
T ss_pred hhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHH----------------------HHHHHHHHHHhCCc--
Confidence 588899999999999988777778999999999999765331 12345667777765
Q ss_pred CCCCCCcchHHHHHH
Q 006765 294 PEKKGKSFCRFLVGL 308 (632)
Q Consensus 294 p~~k~~vs~~fLf~L 308 (632)
+.+|.++|...
T Consensus 91 ----~~l~~~~L~~~ 101 (103)
T PF07707_consen 91 ----PLLSPEELQNV 101 (103)
T ss_dssp ----HCT-HHHHHHC
T ss_pred ----ccCCHHHHHHH
Confidence 45666666543
No 23
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=87.72 E-value=1.2 Score=38.11 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=34.6
Q ss_pred cccccCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 006765 214 EDLSYLSVGLFERLIKTMEARGMRPENLAGAIMYYARKY 252 (632)
Q Consensus 214 EDl~~Ls~~lf~rvI~am~~~g~~~e~I~~aL~~Yakk~ 252 (632)
+|+..||.+.+..+|.........++.+.++++.|++..
T Consensus 35 ~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~ 73 (101)
T smart00875 35 EEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD 73 (101)
T ss_pred cHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC
Confidence 688999999999999998887778999999999999653
No 24
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=85.32 E-value=2.7 Score=39.83 Aligned_cols=93 Identities=14% Similarity=0.295 Sum_probs=67.5
Q ss_pred EEEE-ECCEEEEeeccccccccHHHHHhhhcccCCCCccceEEecCCCCCHHHHHHHHHhhcCCc---------cc----
Q 006765 27 ITVI-VEGINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHR---------VE---- 92 (632)
Q Consensus 27 V~v~-V~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~v~L~d~pggae~Felv~~FcYg~~---------i~---- 92 (632)
|.|. .+|+.|.+.+. .|-+|=.++.|+....+.+ ..+.++.+ .+..|..+.+||---+ ++
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~~~n---~p~p~pnV--rSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCDSTACN---YPIPAPNV--RSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhccccccC---CCCcccch--hHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 4443 57899999886 6788999999887654433 33445556 5789999999996321 11
Q ss_pred ------------cCcchHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhh
Q 006765 93 ------------FTPRNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNV 131 (632)
Q Consensus 93 ------------it~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v 131 (632)
+...-...+.-||.||++.. |++.||+-..+.+
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemi 122 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMI 122 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHH
Confidence 12234456778999999998 9999999888877
No 25
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=85.11 E-value=0.72 Score=48.52 Aligned_cols=60 Identities=10% Similarity=0.129 Sum_probs=39.9
Q ss_pred EEEeeccccccccHHHHHhhhcc----cCCCC----ccceEEecCCCCCHHHHHH-HHHhhcCCccccCc
Q 006765 35 NFHLHKFPLVSKCAKIARIYEES----QSTHI----KTFTTELEDFPGGPGTFLI-AAKFCYGHRVEFTP 95 (632)
Q Consensus 35 ~F~lHK~vLas~S~yfr~lf~~~----~e~~~----~~~~v~L~d~pggae~Fel-v~~FcYg~~i~it~ 95 (632)
++.+||.+.+++|++||.++... .|... ....|.+...- =|.+|.- ++.|+||-.++++.
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I-~PkafA~i~lhclYTD~lDlSl 330 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELI-FPKAFAPIFLHCLYTDRLDLSL 330 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhh-cchhhhhhhhhhheecccchhh
Confidence 57799999999999999987432 21111 13466665421 2466764 57899998887643
No 26
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=84.02 E-value=1.2 Score=48.81 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=57.4
Q ss_pred EEEEeeccccccccHHHHHhhhcc-cCCCCc--cceEEecCCCCCHHHHHHHHHhhcCCccccCcchHHHHHHHhhhhcC
Q 006765 34 INFHLHKFPLVSKCAKIARIYEES-QSTHIK--TFTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRNIVTVYAAADYLEM 110 (632)
Q Consensus 34 ~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~--~~~v~L~d~pggae~Felv~~FcYg~~i~it~~NV~~L~cAA~~LqM 110 (632)
..+|+|..++ ++..||+.||++. .++..+ .....|+.+ .....|++++|.|+-+-+|-++-...++--|..|-.
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~--~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSL--ADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchH--HHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 4599999876 6889999999986 442211 123344444 358899999999999999999888888888888877
Q ss_pred CC
Q 006765 111 TD 112 (632)
Q Consensus 111 te 112 (632)
..
T Consensus 378 ~~ 379 (516)
T KOG0511|consen 378 AD 379 (516)
T ss_pred hh
Confidence 64
No 27
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=80.61 E-value=6.9 Score=42.01 Aligned_cols=112 Identities=17% Similarity=0.270 Sum_probs=79.1
Q ss_pred hhcCCCeeEEEEECCEEEEeecccccccc-HHHHHhhhcc---cCCCCccceEEe-cCCCCCHHHHHHHHHhhcCCcccc
Q 006765 19 CSAGLPSDITVIVEGINFHLHKFPLVSKC-AKIARIYEES---QSTHIKTFTTEL-EDFPGGPGTFLIAAKFCYGHRVEF 93 (632)
Q Consensus 19 r~~g~~~DV~v~V~~~~F~lHK~vLas~S-~yfr~lf~~~---~e~~~~~~~v~L-~d~pggae~Felv~~FcYg~~i~i 93 (632)
|..|-.--++..|++..|-.-+++|-+.- .-+-.||... ...++ ..+.++ .++ +...|..|++|--+|.|.-
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNE-rgEyeVAdGi--~s~vFRAILdYYksG~iRC 166 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNE-RDEFEVADGM--TSSCFRAILDYYQSGTMRC 166 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCc-CCceehhcch--hHHHHHHHHHHHhcCceeC
Confidence 45566667899999999999999888763 2344666543 11121 245555 366 6899999999988888865
Q ss_pred C-cchHHHHHHHhhhhcCCCCCC---------------cchHHHHHHHHHHHhhhh
Q 006765 94 T-PRNIVTVYAAADYLEMTDEDD---------------EDNLVSQSESFFHKNVLR 133 (632)
Q Consensus 94 t-~~NV~~L~cAA~~LqMte~~~---------------~~NL~~~ce~FL~~~v~~ 133 (632)
- .-.|-.|+.|.+||-++=++. .+.-.++.+.||++.+++
T Consensus 167 P~~vSvpELrEACDYLlipF~a~TvkCqnL~aLlHELSNeGAR~QFe~fLEe~ILP 222 (438)
T KOG3840|consen 167 PSSVSVSELREACDYLLVPFNAQTVKCQNLHALLHELSNEGAREQFSQFLEEIILP 222 (438)
T ss_pred CCCCchHHHHhhcceEEeecccceeeehhHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 3 356788999999999885543 334556777888887765
No 28
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=73.88 E-value=2.6 Score=36.00 Aligned_cols=34 Identities=15% Similarity=0.393 Sum_probs=28.4
Q ss_pred ccCcchHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhh
Q 006765 92 EFTPRNIVTVYAAADYLEMTDEDDEDNLVSQSESFFHKNV 131 (632)
Q Consensus 92 ~it~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v 131 (632)
.++...+..|+.||.||+|+. |++.|+.++...+
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~------L~~~~~~~iA~~i 43 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKG------LLDLCCKYIANMI 43 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HH------HHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHcchH------HHHHHHHHHHHHh
Confidence 346778999999999999998 9999999998877
No 29
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=71.16 E-value=11 Score=42.09 Aligned_cols=82 Identities=10% Similarity=0.038 Sum_probs=60.7
Q ss_pred EEEEECCEEEEeecccccccc--HHHHHhhhccc--CCCCccceEEecCCCCCHHHHHHHHHhhcCCccccCcchHHHHH
Q 006765 27 ITVIVEGINFHLHKFPLVSKC--AKIARIYEESQ--STHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRNIVTVY 102 (632)
Q Consensus 27 V~v~V~~~~F~lHK~vLas~S--~yfr~lf~~~~--e~~~~~~~v~L~d~pggae~Felv~~FcYg~~i~it~~NV~~L~ 102 (632)
|-+.|||+.|.--+.-|+.-. .+|.+|++... ..+ +...|-| .-+|+.|..+++|.-|+++.+..--...++
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~-~~~~iFI---DRDPdlFaviLn~LRTg~L~~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKD-ESGAIFI---DRDPDLFAVILNLLRTGDLDASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccC-CCCceEe---cCCchHHHHHHHHHhcCCCCCccCchhhhh
Confidence 568999999999998887755 68999997531 111 1123443 336799999999999999999554444455
Q ss_pred H-HhhhhcCCC
Q 006765 103 A-AADYLEMTD 112 (632)
Q Consensus 103 c-AA~~LqMte 112 (632)
- =|.|.+++.
T Consensus 89 hdEA~fYGl~~ 99 (465)
T KOG2714|consen 89 HDEAMFYGLTP 99 (465)
T ss_pred hhhhhhcCcHH
Confidence 5 899999997
No 30
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=70.03 E-value=5.2 Score=26.94 Aligned_cols=17 Identities=29% Similarity=0.849 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006765 545 DMDKMRSRVGELEEEFG 561 (632)
Q Consensus 545 e~~~mr~Rv~eLEkec~ 561 (632)
||++.|.||.+||++..
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 69999999999999865
No 31
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=62.18 E-value=2.7 Score=46.15 Aligned_cols=70 Identities=20% Similarity=0.093 Sum_probs=48.1
Q ss_pred cchhhhhhcCCC--eeEEEEE-CCEEEEeeccccccccHHHHHhhh-cccCCCCccceE-EecCCCCCHHHHHHHHHhhc
Q 006765 13 EGNDWYCSAGLP--SDITVIV-EGINFHLHKFPLVSKCAKIARIYE-ESQSTHIKTFTT-ELEDFPGGPGTFLIAAKFCY 87 (632)
Q Consensus 13 ~~~~w~r~~g~~--~DV~v~V-~~~~F~lHK~vLas~S~yfr~lf~-~~~e~~~~~~~v-~L~d~pggae~Felv~~FcY 87 (632)
.-++-++.+++. .|++..+ +|..|-+||+.|+++|.||..-+. ....+ .+| .+.-+ +.+|+..++|.|
T Consensus 136 hi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~----heI~~~~v~---~~~f~~flk~ly 208 (516)
T KOG0511|consen 136 HIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQG----HEIEAHRVI---LSAFSPFLKQLY 208 (516)
T ss_pred HHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcccc----Cchhhhhhh---HhhhhHHHHHHH
Confidence 345667888773 3888877 589999999999999887754332 22222 233 33334 589999999999
Q ss_pred CC
Q 006765 88 GH 89 (632)
Q Consensus 88 g~ 89 (632)
-.
T Consensus 209 l~ 210 (516)
T KOG0511|consen 209 LN 210 (516)
T ss_pred Hh
Confidence 64
No 32
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=53.88 E-value=16 Score=39.62 Aligned_cols=30 Identities=17% Similarity=0.443 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhc
Q 006765 543 KVDMDKMRSRVGELEEEFGKIKQEMKRVTK 572 (632)
Q Consensus 543 k~e~~~mr~Rv~eLEkec~~mk~~~~k~~k 572 (632)
|.||+.+..||.||||+...++++++.+.+
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 568999999999999999999999988765
No 33
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=53.48 E-value=48 Score=34.47 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=66.1
Q ss_pred EEEEECCEEEEeeccccccc--cHHHHHhhhcc--c-CCCCccceEEecCCCCCHHHHHHHHHhhcCCcc-ccCcchHHH
Q 006765 27 ITVIVEGINFHLHKFPLVSK--CAKIARIYEES--Q-STHIKTFTTELEDFPGGPGTFLIAAKFCYGHRV-EFTPRNIVT 100 (632)
Q Consensus 27 V~v~V~~~~F~lHK~vLas~--S~yfr~lf~~~--~-e~~~~~~~v~L~d~pggae~Felv~~FcYg~~i-~it~~NV~~ 100 (632)
|-+.+||+.|.--..-|.-+ =.-+-+||... . +++ ++.-+-| |= +|.-||-|+.|.-.|.| ..+.-|+..
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d-~kGa~lI-DR--sp~yFepIlNyLr~Gq~~~~s~i~~lg 86 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQED-KKGAVLI-DR--SPKYFEPILNYLRDGQIPSLSDIDCLG 86 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccc-cCceEEE-cc--CchhhHHHHHHHhcCceeecCCccHHH
Confidence 56789999999888877776 34678899864 1 111 1233443 32 46899999999998776 467789999
Q ss_pred HHHHhhhhcCCCCCCcchHHHHHHH
Q 006765 101 VYAAADYLEMTDEDDEDNLVSQSES 125 (632)
Q Consensus 101 L~cAA~~LqMte~~~~~NL~~~ce~ 125 (632)
++.+|.|+|+-. |++--++
T Consensus 87 vLeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 87 VLEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHHhhHHhhHh------HHhHHhh
Confidence 999999999987 7776666
No 34
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=53.24 E-value=45 Score=33.23 Aligned_cols=99 Identities=12% Similarity=0.083 Sum_probs=69.9
Q ss_pred eeEEEEECCEEEEeecccccccc-HHHHHhhhcccC--CCCccceEEecCCCCCHHHHHHHHHhhcCCccccCcchHHHH
Q 006765 25 SDITVIVEGINFHLHKFPLVSKC-AKIARIYEESQS--THIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRNIVTV 101 (632)
Q Consensus 25 ~DV~v~V~~~~F~lHK~vLas~S-~yfr~lf~~~~e--~~~~~~~v~L~d~pggae~Felv~~FcYg~~i~it~~NV~~L 101 (632)
.=|-+.|||..|.--|.-|.--+ .++.++....++ .+....---| |.-+|.-|.-|++|.--|++.++.--=..+
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYl--IDRDP~~FgpvLNylRhgklvl~~l~eeGv 98 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYL--IDRDPFYFGPVLNYLRHGKLVLNKLSEEGV 98 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceE--eccCcchHHHHHHHHhcchhhhhhhhhhcc
Confidence 33567899999999999998877 666676654321 1100112223 223568999999999999999998666668
Q ss_pred HHHhhhhcCCCCCCcchHHHHHHHHHHHhh
Q 006765 102 YAAADYLEMTDEDDEDNLVSQSESFFHKNV 131 (632)
Q Consensus 102 ~cAA~~LqMte~~~~~NL~~~ce~FL~~~v 131 (632)
+.-|+|...+. |+....+-+.+..
T Consensus 99 L~EAefyn~~~------li~likd~i~dRd 122 (210)
T KOG2715|consen 99 LEEAEFYNDPS------LIQLIKDRIQDRD 122 (210)
T ss_pred chhhhccCChH------HHHHHHHHHHHHh
Confidence 89999999987 7776666555543
No 35
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=52.61 E-value=22 Score=30.94 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHh
Q 006765 544 VDMDKMRSRVGELEEEFGKIKQEMKR 569 (632)
Q Consensus 544 ~e~~~mr~Rv~eLEkec~~mk~~~~k 569 (632)
.||+.||..|.+||..+..||+..+.
T Consensus 39 ~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 39 QEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999988753
No 36
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=52.48 E-value=23 Score=29.19 Aligned_cols=33 Identities=33% Similarity=0.387 Sum_probs=28.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006765 535 VARENHGLKVDMDKMRSRVGELEEEFGKIKQEM 567 (632)
Q Consensus 535 ~~ren~~Lk~e~~~mr~Rv~eLEkec~~mk~~~ 567 (632)
++.|.+.||..+.....|+.+||.|+.-+|+-.
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466789999999999999999999999888765
No 37
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.57 E-value=18 Score=37.84 Aligned_cols=90 Identities=13% Similarity=-0.007 Sum_probs=65.0
Q ss_pred CEEEEeeccccccccHHHHHhhhcccCCCCccceEEecCCCCCHHHHHHHHHhhcCCccccCcchHH---HHHHHhhhhc
Q 006765 33 GINFHLHKFPLVSKCAKIARIYEESQSTHIKTFTTELEDFPGGPGTFLIAAKFCYGHRVEFTPRNIV---TVYAAADYLE 109 (632)
Q Consensus 33 ~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~v~L~d~pggae~Felv~~FcYg~~i~it~~NV~---~L~cAA~~Lq 109 (632)
+..+..|+.+++++|+-|+.|+....... ....+.+.+. +++.|+.+..|.|...-.-+..++. .+.++|.-.+
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~-~~~~~~~~d~--~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKE-SSKLITLLEE--KPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchh-cccccccccc--chhhHhhhceEEEeccchHHHHHhhcCChhhhhccccc
Confidence 45599999999999999999987642211 1234455566 4689999999999855444455554 6777777666
Q ss_pred CCCCCCcchHHHHHHHHHHHhh
Q 006765 110 MTDEDDEDNLVSQSESFFHKNV 131 (632)
Q Consensus 110 Mte~~~~~NL~~~ce~FL~~~v 131 (632)
-.. |...|...|...+
T Consensus 186 ~~~------lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 186 NRH------LKLACMPVLLSLI 201 (297)
T ss_pred cHH------HHHHHHHHHHHHH
Confidence 665 9999998888866
No 38
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=51.23 E-value=8.4 Score=30.13 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHH
Q 006765 546 MDKMRSRVGELEEEFGKIKQE 566 (632)
Q Consensus 546 ~~~mr~Rv~eLEkec~~mk~~ 566 (632)
-+.+|.||.|||.|...+|+-
T Consensus 13 ~e~l~vrv~eLEeEV~~LrKI 33 (48)
T PF14077_consen 13 QEQLRVRVSELEEEVRTLRKI 33 (48)
T ss_pred cchheeeHHHHHHHHHHHHHH
Confidence 467889999999998877653
No 39
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=50.20 E-value=9.3 Score=34.07 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=33.2
Q ss_pred cCCCCCCcchhHHHHHHHHHHhCCCCCHHHHhhhhcccccCCCC
Q 006765 423 LPDSSRPFHDGLYRALDIYFQAHPWLSERDKEELCNIIDYQKLS 466 (632)
Q Consensus 423 lPd~aR~~~DgLYrAIDiYLK~Hp~lse~Er~~lC~~ldcqKLS 466 (632)
+|++-......+|+|+..||.+....+. .|-++++.-|.+.++
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~~ 72 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNLV 72 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCceE
Confidence 4444556778999999999999987775 888888877766643
No 40
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=47.95 E-value=22 Score=38.03 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=35.2
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHhhhc
Q 006765 530 DGWVTVARENHGLKVDMDKMRSRVGELEEEFGKIKQEMKRVTK 572 (632)
Q Consensus 530 ~~~~~~~ren~~Lk~e~~~mr~Rv~eLEkec~~mk~~~~k~~k 572 (632)
..|.++..|.+.|-..=+.+|.++.+||||..-||+-|...-+
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777888888889999999999999999999965543
No 41
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=35.28 E-value=61 Score=31.19 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=29.1
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Q 006765 532 WVTVARENHGLKVDMDKMRSRVGELEEEFGKIKQEMKRV 570 (632)
Q Consensus 532 ~~~~~ren~~Lk~e~~~mr~Rv~eLEkec~~mk~~~~k~ 570 (632)
..+++.|+..|-.+++.|+.||.+||.-+++...-|+..
T Consensus 75 L~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 75 LDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345677778888888888888888888877777666543
No 42
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=34.78 E-value=71 Score=27.46 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=30.4
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006765 532 WVTVARENHGLKVDMDKMRSRVGELEEEFGKIKQEMK 568 (632)
Q Consensus 532 ~~~~~ren~~Lk~e~~~mr~Rv~eLEkec~~mk~~~~ 568 (632)
...+..||-+||.+++.|+..+.++.+......+.++
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999998888777766654
No 43
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.28 E-value=59 Score=38.14 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=55.3
Q ss_pred CCchhhhHHHHHHHHHHHHhccCCCCChhhHHHHHHhcCCCCCCcc--hhHHHHHHHHHHhCCCCCHHHHh
Q 006765 386 SSSGSLRKVSKLIDSYIAEVASDVNLKPGKIRSLAVALPDSSRPFH--DGLYRALDIYFQAHPWLSERDKE 454 (632)
Q Consensus 386 ~~~~~l~~VakLvD~YLaEvA~D~nL~~~kF~~Lae~lPd~aR~~~--DgLYrAIDiYLK~Hp~lse~Er~ 454 (632)
|.+....|+|.-++.-| .-||..|+++.=+.+-...+-+....| |.|=-|+..|+.--|.|..-||+
T Consensus 299 p~P~~V~KiAasf~A~l--y~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~ 367 (652)
T COG2433 299 PAPETVKKIAASFNAVL--YTPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERK 367 (652)
T ss_pred CChHHHHHHHHHcCCcc--cCCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888888888877 478999999998888888888888777 88999999999877777777765
No 44
>PHA01750 hypothetical protein
Probab=31.06 E-value=79 Score=26.75 Aligned_cols=34 Identities=21% Similarity=0.477 Sum_probs=26.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q 006765 536 ARENHGLKVDMDKMRSRVGELEEEFGKIKQEMKR 569 (632)
Q Consensus 536 ~ren~~Lk~e~~~mr~Rv~eLEkec~~mk~~~~k 569 (632)
..|...|+.+++..+.|..+||++...+|+.+.|
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 5577778888888888888888888877776654
No 45
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=29.86 E-value=2.4e+02 Score=25.88 Aligned_cols=54 Identities=20% Similarity=0.365 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHhhHHHhhhcccccCCCCCCCCCCCCCCCCcccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 006765 481 LRVILQVLFFEQLQLRTALASCLNALDTESAPAGPLTGPSDMAGEIVQRDGWVTVARENHGLKVDMDKMRSRVGELEEEF 560 (632)
Q Consensus 481 lr~vVQvLf~eQl~lr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ren~~Lk~e~~~mr~Rv~eLEkec 560 (632)
+++.+|=|+.-|-.|-..+. .+..+++.+..+.++.+..+.+++.++
T Consensus 64 aQl~ieYLl~~q~~L~~~~~---------------------------------~l~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (118)
T PF13815_consen 64 AQLSIEYLLHCQEYLSSQLE---------------------------------QLEERLQELQQEIEKLKQKLKKQKEEI 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888887776644322 224455666677777777788888888
Q ss_pred hhhHHHH
Q 006765 561 GKIKQEM 567 (632)
Q Consensus 561 ~~mk~~~ 567 (632)
..+|+|.
T Consensus 111 k~lk~E~ 117 (118)
T PF13815_consen 111 KKLKKES 117 (118)
T ss_pred HHHHHhc
Confidence 7777764
No 46
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=29.60 E-value=40 Score=34.48 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=26.4
Q ss_pred HhcC--CCCCCcchhHHHHHHHHHHhCCCCCHHHHh
Q 006765 421 VALP--DSSRPFHDGLYRALDIYFQAHPWLSERDKE 454 (632)
Q Consensus 421 e~lP--d~aR~~~DgLYrAIDiYLK~Hp~lse~Er~ 454 (632)
+-+| +..+..-+|=|+||..|||.||+==|.++.
T Consensus 184 ~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~ 219 (237)
T COG3510 184 NDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTS 219 (237)
T ss_pred cCCCCcccchhcCCChHHHHHHHHHhCCcccccchh
Confidence 4455 555668999999999999999976665554
No 47
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.88 E-value=92 Score=30.70 Aligned_cols=34 Identities=32% Similarity=0.546 Sum_probs=20.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006765 535 VARENHGLKVDMDKMRSRVGELEEEFGKIKQEMK 568 (632)
Q Consensus 535 ~~ren~~Lk~e~~~mr~Rv~eLEkec~~mk~~~~ 568 (632)
+..||+.|+.++..++.++.+||++...+++++.
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666655554443
No 48
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=27.11 E-value=42 Score=40.85 Aligned_cols=76 Identities=21% Similarity=0.391 Sum_probs=51.8
Q ss_pred cccCCCCCCcccchHHHHHHHHHHhcccccccCCCCCCcccccCCCchhhhHHHHHHHHHHHHhccCCCCChhhHHHHHH
Q 006765 342 LIPNYSDSDTLYNTDCVERIFHHFMTSETIITSFSPASADVETSSSSGSLRKVSKLIDSYIAEVASDVNLKPGKIRSLAV 421 (632)
Q Consensus 342 LiPs~~~~~tlyDvd~V~ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEvA~D~nL~~~kF~~Lae 421 (632)
+||...|+ +.+.+.-+++||-..-. +|.|=.+..+|..+.+..|..+++
T Consensus 252 iLP~Lt~G----~~e~m~~Lv~~F~p~l~---------------------------f~~~D~~~~~~~~~~Le~F~~i~~ 300 (802)
T PF13764_consen 252 ILPFLTYG----NEEKMDALVEHFKPYLD---------------------------FDKFDEEHSPDEQFKLECFCEIAE 300 (802)
T ss_pred HhhHHhcC----CHHHHHHHHHHHHHhcC---------------------------hhhcccccCchHHHHHHHHHHHHh
Confidence 45655444 67888999999943211 344444556677788999999999
Q ss_pred hcCCCC--C-----CcchhHHH-HHHHHHHhCCCC
Q 006765 422 ALPDSS--R-----PFHDGLYR-ALDIYFQAHPWL 448 (632)
Q Consensus 422 ~lPd~a--R-----~~~DgLYr-AIDiYLK~Hp~l 448 (632)
++|.++ . ..+=|++. |++.-++.+|..
T Consensus 301 ~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~ 335 (802)
T PF13764_consen 301 GIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSL 335 (802)
T ss_pred cCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCccc
Confidence 999887 2 23456666 898555566765
No 49
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=26.94 E-value=47 Score=27.30 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHhCCCCC
Q 006765 432 DGLYRALDIYFQAHPWLS 449 (632)
Q Consensus 432 DgLYrAIDiYLK~Hp~ls 449 (632)
--||.|+.-||+.||+-.
T Consensus 8 e~L~~~m~~fie~hP~WD 25 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWD 25 (57)
T ss_pred HHHHHHHHHHHHcCCCch
Confidence 359999999999999754
No 50
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=26.77 E-value=1.7e+02 Score=33.42 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHhccCC----------------CCChhhHHHHHHhcCCCCC----Cc-chh---------HHHHHH
Q 006765 390 SLRKVSKLIDSYIAEVASDV----------------NLKPGKIRSLAVALPDSSR----PF-HDG---------LYRALD 439 (632)
Q Consensus 390 ~l~~VakLvD~YLaEvA~D~----------------nL~~~kF~~Lae~lPd~aR----~~-~Dg---------LYrAID 439 (632)
-...|.+.+-.+|-+++.++ +|++-.|..|++-.-++.+ .. .|. +|||+|
T Consensus 344 D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRavd 423 (523)
T KOG2016|consen 344 DALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAVD 423 (523)
T ss_pred hHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhcccchhhhhhccccccchhHHHHHHHHHHH
Confidence 35588999999999999884 4555566667774443333 33 333 799999
Q ss_pred HHHHhCCCCCH
Q 006765 440 IYFQAHPWLSE 450 (632)
Q Consensus 440 iYLK~Hp~lse 450 (632)
-||+.|-...-
T Consensus 424 rfl~~~gk~pG 434 (523)
T KOG2016|consen 424 RFLKEKGKYPG 434 (523)
T ss_pred HHHHHhcCCCC
Confidence 99998876554
No 51
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=26.43 E-value=1.7e+02 Score=33.68 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=58.7
Q ss_pred CCeeEEEEECCEEEEeeccccccc-cHHHHHhhhccc-C--------CCCccceEEecCCCCCHHHHHHHHHhhcCCccc
Q 006765 23 LPSDITVIVEGINFHLHKFPLVSK-CAKIARIYEESQ-S--------THIKTFTTELEDFPGGPGTFLIAAKFCYGHRVE 92 (632)
Q Consensus 23 ~~~DV~v~V~~~~F~lHK~vLas~-S~yfr~lf~~~~-e--------~~~~~~~v~L~d~pggae~Felv~~FcYg~~i~ 92 (632)
...-|+|.|||.++.+-+..|... =.++.++..... + -+....+.-+ .-.|.+|..|++|-+||++.
T Consensus 29 ~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfF---DR~P~~F~~Vl~fYrtGkLH 105 (477)
T KOG3713|consen 29 LDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFF---DRHPGAFAYVLNFYRTGKLH 105 (477)
T ss_pred cCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeee---ccChHHHHHHHHHHhcCeec
Confidence 344688999999999988777662 234445544221 1 0111344543 33567999999999999998
Q ss_pred cCcchHHHHHH--HhhhhcCCCCCCcchHHHHHHH
Q 006765 93 FTPRNIVTVYA--AADYLEMTDEDDEDNLVSQSES 125 (632)
Q Consensus 93 it~~NV~~L~c--AA~~LqMte~~~~~NL~~~ce~ 125 (632)
. +.+|..+.- =-+|=++++ +-++.||.
T Consensus 106 ~-p~~vC~~~F~eEL~yWgI~~-----~~le~CC~ 134 (477)
T KOG3713|consen 106 V-PADVCPLSFEEELDYWGIDE-----AHLESCCW 134 (477)
T ss_pred c-ccccchHHHHHHHHHhCCCh-----hhhhHHhH
Confidence 7 445544333 336677776 45566654
No 52
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.70 E-value=1.6e+02 Score=24.00 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 006765 540 HGLKVDMDKMRSRVGELEEEFGKIKQE 566 (632)
Q Consensus 540 ~~Lk~e~~~mr~Rv~eLEkec~~mk~~ 566 (632)
..|..+.+.++..+..|++++..++.+
T Consensus 36 ~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 36 EELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444444433
No 53
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.56 E-value=76 Score=33.28 Aligned_cols=27 Identities=37% Similarity=0.545 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhh
Q 006765 544 VDMDKMRSRVGELEEEFGKIKQEMKRV 570 (632)
Q Consensus 544 ~e~~~mr~Rv~eLEkec~~mk~~~~k~ 570 (632)
..=|+.|.|+.|||+|....++++..+
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L 112 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSL 112 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777765555444443
No 54
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=24.18 E-value=1.5e+02 Score=23.42 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006765 541 GLKVDMDKMRSRVGELEEEFGKIKQEM 567 (632)
Q Consensus 541 ~Lk~e~~~mr~Rv~eLEkec~~mk~~~ 567 (632)
.||..++.++.+|..|+...+.-|+..
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yKKa~ 29 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYKKAE 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666677777766666555443
No 55
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=24.02 E-value=1.5e+02 Score=23.47 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q 006765 541 GLKVDMDKMRSRVGELEEEFGKIKQEMKRVT 571 (632)
Q Consensus 541 ~Lk~e~~~mr~Rv~eLEkec~~mk~~~~k~~ 571 (632)
.-|..++.|..+|.+|+.+...+++++..+.
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466788888999999999988888887653
No 56
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=22.63 E-value=88 Score=34.15 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=26.0
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 006765 530 DGWVTVARENHGLKVDMDKMRSRVGELEEEFG 561 (632)
Q Consensus 530 ~~~~~~~ren~~Lk~e~~~mr~Rv~eLEkec~ 561 (632)
++-..++.||..||.|.+.++.+|..||.|..
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456788999999999999999999987743
No 57
>smart00338 BRLZ basic region leucin zipper.
Probab=21.99 E-value=1.6e+02 Score=24.01 Aligned_cols=33 Identities=21% Similarity=0.508 Sum_probs=20.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006765 535 VARENHGLKVDMDKMRSRVGELEEEFGKIKQEM 567 (632)
Q Consensus 535 ~~ren~~Lk~e~~~mr~Rv~eLEkec~~mk~~~ 567 (632)
+..+.+.|..+-+.++.+|..|+.++..++.++
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666666666666666666666654
No 58
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.94 E-value=1.8e+02 Score=30.05 Aligned_cols=35 Identities=34% Similarity=0.395 Sum_probs=28.6
Q ss_pred HhhHHhhcCCCchHHHHHHHHHHHHhhHHHhhhcc
Q 006765 469 ACTHASHNERLPLRVILQVLFFEQLQLRTALASCL 503 (632)
Q Consensus 469 Ac~HAaQNeRlPlr~vVQvLf~eQl~lr~~i~~~~ 503 (632)
-|.|.++|.-..++.-++-+..+.-+++..|....
T Consensus 13 ~C~~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l 47 (302)
T PF10186_consen 13 YCANCVNNRLLELRSELQQLKEENEELRRRIEEIL 47 (302)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999878889999988888888888766543
No 59
>PF15294 Leu_zip: Leucine zipper
Probab=21.38 E-value=1.3e+02 Score=32.12 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=32.9
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Q 006765 532 WVTVARENHGLKVDMDKMRSRVGELEEEFGKIKQEMKRV 570 (632)
Q Consensus 532 ~~~~~ren~~Lk~e~~~mr~Rv~eLEkec~~mk~~~~k~ 570 (632)
..-+..|+..|+.|-+++|.|+..+|+.|..+-.+-.++
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl 165 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKL 165 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999886655544
No 60
>PHA03098 kelch-like protein; Provisional
Probab=21.27 E-value=4.9e+02 Score=29.53 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHHHHHHHhhCCCH---HHHHHHHH
Q 006765 284 VLLETIENLLPEKKGKSFCRFLVGLLRVALILGVNE---KCKESLER 327 (632)
Q Consensus 284 ~LLEtIv~lLp~~k~~vs~~fLf~LLR~A~~l~as~---~cr~~LE~ 327 (632)
..++.|+..+-..+-.++..-+..||.+|..+.... .|...|.+
T Consensus 57 ~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~ 103 (534)
T PHA03098 57 DSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYIIK 103 (534)
T ss_pred HHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 378888887777776778888999999999988764 44444443
No 61
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=20.87 E-value=1.2e+02 Score=31.53 Aligned_cols=26 Identities=35% Similarity=0.699 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006765 542 LKVDMDKMRSRVGELEEEFGKIKQEM 567 (632)
Q Consensus 542 Lk~e~~~mr~Rv~eLEkec~~mk~~~ 567 (632)
++.+...|+.++.+||++...+|+.+
T Consensus 16 ~~~e~~~Lk~kir~le~~l~~Lk~~l 41 (236)
T PF12017_consen 16 LKIENKKLKKKIRRLEKELKKLKQKL 41 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444
No 62
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=20.35 E-value=59 Score=36.83 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=30.2
Q ss_pred ChhhHHHHHHhcCCCCCCcchhHHHHHHHHHHhCCCCCHHH
Q 006765 412 KPGKIRSLAVALPDSSRPFHDGLYRALDIYFQAHPWLSERD 452 (632)
Q Consensus 412 ~~~kF~~Lae~lPd~aR~~~DgLYrAIDiYLK~Hp~lse~E 452 (632)
--..=+++-|-| .+.+|..|=||-|.++|-+.|||+.+.+
T Consensus 199 eYeERMe~Leev-tyPkPL~e~L~~af~~y~~~hPWv~~~~ 238 (461)
T PF12029_consen 199 EYEERMERLEEV-TYPKPLAELLEAAFETYRRGHPWVGDFE 238 (461)
T ss_pred CHHHHHHHHhhC-CCCCchHHHHHHHHHHHHhcCCcccCCC
Confidence 333334444444 3889999999999999999999987764
No 63
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=20.07 E-value=1.5e+02 Score=29.76 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhh
Q 006765 546 MDKMRSRVGELEEEFGKIKQEMKRVT 571 (632)
Q Consensus 546 ~~~mr~Rv~eLEkec~~mk~~~~k~~ 571 (632)
++.|+..+.+|-++|..|+..|.++.
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777664
Done!