Query 006766
Match_columns 632
No_of_seqs 149 out of 215
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 14:10:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006766.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006766hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2769 Putative u4/u6 small n 100.0 1E-128 2E-133 1028.7 32.7 425 142-631 94-522 (522)
2 PF08572 PRP3: pre-mRNA proces 100.0 2.1E-72 4.4E-77 559.0 20.1 221 246-477 1-223 (223)
3 PF06544 DUF1115: Protein of u 100.0 5.4E-42 1.2E-46 313.9 11.0 128 499-626 1-128 (128)
4 PF04940 BLUF: Sensors of blue 94.7 0.057 1.2E-06 47.9 5.1 66 517-601 27-92 (93)
5 PRK14432 acylphosphatase; Prov 67.6 6.1 0.00013 35.3 3.4 45 512-556 17-63 (93)
6 PRK10455 periplasmic protein; 66.5 28 0.00062 34.2 8.1 75 391-481 53-136 (161)
7 PRK14421 acylphosphatase; Prov 66.4 6.4 0.00014 35.8 3.4 45 511-555 18-63 (99)
8 PRK14436 acylphosphatase; Prov 66.1 6.3 0.00014 35.0 3.2 46 511-556 18-64 (91)
9 PRK10363 cpxP periplasmic repr 66.1 30 0.00066 34.5 8.2 77 389-481 45-130 (166)
10 PRK14430 acylphosphatase; Prov 66.0 6.3 0.00014 35.2 3.2 43 512-554 19-62 (92)
11 PRK14420 acylphosphatase; Prov 65.0 7.3 0.00016 34.3 3.4 46 512-557 17-63 (91)
12 PRK14452 acylphosphatase; Prov 65.0 6.7 0.00015 36.2 3.3 50 508-557 31-81 (107)
13 PRK14441 acylphosphatase; Prov 64.0 7.8 0.00017 34.6 3.4 45 511-555 19-64 (93)
14 PRK14424 acylphosphatase; Prov 63.3 7.8 0.00017 34.9 3.3 46 510-555 20-66 (94)
15 PRK14426 acylphosphatase; Prov 63.0 7.6 0.00017 34.5 3.1 45 511-555 18-63 (92)
16 PRK14445 acylphosphatase; Prov 62.7 9.2 0.0002 33.9 3.6 45 511-555 18-63 (91)
17 PRK14427 acylphosphatase; Prov 62.6 8.4 0.00018 34.5 3.3 46 511-556 20-66 (94)
18 PRK14449 acylphosphatase; Prov 61.6 8.7 0.00019 34.0 3.2 45 512-556 18-63 (90)
19 PF00708 Acylphosphatase: Acyl 61.4 8.3 0.00018 33.6 3.0 53 508-560 15-68 (91)
20 COG1254 AcyP Acylphosphatases 61.3 9.6 0.00021 34.3 3.5 49 507-555 14-63 (92)
21 PRK14442 acylphosphatase; Prov 60.9 9.7 0.00021 33.8 3.4 45 511-555 18-63 (91)
22 PRK12751 cpxP periplasmic stre 60.6 43 0.00093 33.2 8.1 79 390-481 52-136 (162)
23 PRK14429 acylphosphatase; Prov 60.4 9.6 0.00021 33.7 3.3 46 512-557 17-63 (90)
24 PRK14440 acylphosphatase; Prov 60.3 9.5 0.00021 33.9 3.2 44 512-555 18-62 (90)
25 PRK14435 acylphosphatase; Prov 60.1 9.1 0.0002 33.9 3.1 44 512-555 17-61 (90)
26 PF13801 Metal_resist: Heavy-m 59.8 58 0.0013 28.1 8.1 79 392-481 39-124 (125)
27 PRK14448 acylphosphatase; Prov 58.6 10 0.00022 33.7 3.1 44 512-555 17-61 (90)
28 PRK14437 acylphosphatase; Prov 58.5 9.9 0.00021 35.2 3.1 48 508-555 34-82 (109)
29 PRK14433 acylphosphatase; Prov 58.3 11 0.00024 33.2 3.3 44 512-555 16-60 (87)
30 PRK14438 acylphosphatase; Prov 56.6 12 0.00026 33.3 3.2 44 512-555 18-62 (91)
31 PRK14423 acylphosphatase; Prov 56.2 12 0.00026 33.3 3.2 46 512-557 20-66 (92)
32 PRK14450 acylphosphatase; Prov 55.9 12 0.00026 33.1 3.2 43 512-554 17-61 (91)
33 PRK14422 acylphosphatase; Prov 55.2 14 0.00029 33.1 3.4 47 510-556 19-66 (93)
34 PRK14451 acylphosphatase; Prov 54.7 13 0.00029 32.9 3.2 46 511-556 17-63 (89)
35 PRK14425 acylphosphatase; Prov 53.7 14 0.0003 33.1 3.2 45 511-555 20-65 (94)
36 PRK14443 acylphosphatase; Prov 53.6 15 0.00033 33.1 3.4 45 512-556 19-64 (93)
37 PRK14444 acylphosphatase; Prov 53.5 15 0.00033 32.7 3.4 46 512-557 19-65 (92)
38 PF08690 GET2: GET complex sub 53.0 11 0.00024 40.5 2.9 26 395-420 2-32 (302)
39 PRK14446 acylphosphatase; Prov 52.2 17 0.00036 32.4 3.4 43 513-555 18-61 (88)
40 PRK14434 acylphosphatase; Prov 46.2 21 0.00046 31.9 3.2 45 512-556 17-64 (92)
41 PRK14428 acylphosphatase; Prov 45.8 22 0.00048 32.3 3.2 46 510-555 21-67 (97)
42 PRK14439 acylphosphatase; Prov 45.8 21 0.00046 35.5 3.4 46 511-556 89-135 (163)
43 PRK14431 acylphosphatase; Prov 45.2 29 0.00063 30.8 3.8 44 512-556 17-61 (89)
44 PRK14447 acylphosphatase; Prov 44.5 25 0.00053 31.5 3.3 44 512-555 19-64 (95)
45 KOG3360 Acylphosphatase [Energ 37.5 68 0.0015 29.7 5.0 68 518-600 29-97 (98)
46 PRK12750 cpxP periplasmic repr 29.9 2.2E+02 0.0048 28.3 7.6 17 391-407 49-65 (170)
47 PHA00431 internal virion prote 28.9 47 0.001 39.3 3.1 49 462-521 66-115 (746)
48 COG5154 BRX1 RNA-binding prote 26.3 57 0.0012 34.1 2.9 40 440-479 231-270 (283)
49 PF07462 MSP1_C: Merozoite sur 25.0 1.1E+02 0.0025 35.7 5.2 21 66-86 237-257 (574)
50 KOG2879 Predicted E3 ubiquitin 23.1 85 0.0018 33.9 3.5 12 31-42 192-203 (298)
51 PF12396 DUF3659: Protein of u 22.7 53 0.0011 28.0 1.6 19 195-213 38-56 (64)
52 TIGR00985 3a0801s04tom mitocho 21.8 2E+02 0.0044 28.3 5.6 19 444-462 79-97 (148)
53 PF11336 DUF3138: Protein of u 20.9 3.7E+02 0.0081 31.1 8.0 27 69-95 26-53 (514)
No 1
>KOG2769 consensus Putative u4/u6 small nuclear ribonucleoprotein [RNA processing and modification]
Probab=100.00 E-value=1.1e-128 Score=1028.72 Aligned_cols=425 Identities=50% Similarity=0.746 Sum_probs=375.4
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcC--CCCCCCCCceEecCCC--CeeccCCCeeeccCCCc
Q 006766 142 NITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAV--PQKPTKAPVLRVDALG--REIDEHGNVVNRTKPSN 217 (632)
Q Consensus 142 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~kp~~L~LD~~G--R~ID~~G~vI~~~kp~~ 217 (632)
+....++++|++.|+.. ++++..+.+..+ +..|+++..|+-|+.| |.||+.|++|. ++|..
T Consensus 94 s~~~~~~~~r~~~L~~~--------------~~~~~~t~~~~~~~a~~~tkg~~l~~~~le~~r~i~e~~~~i~-t~~~~ 158 (522)
T KOG2769|consen 94 SKQILEAVKRPQELAQN--------------IQNSIRTPDMPISKAIKQTKGAVLRQDALEKKRKIDELGNVID-TKPSN 158 (522)
T ss_pred hHHHHHHHhhhhhhccc--------------cccccCCcccchhhhhcccccceeehhhhhhhhhHhhhcchhh-ccccc
Confidence 45667899999998665 223333444455 6789999999999999 99999999999 78888
Q ss_pred ccchhhhhhhhhhhHHHhcCCCcCCCCCCCCCCCCCCCCCcccccCCCccceeeccCchhHHHHHHHHHHhhhchHhHHH
Q 006766 218 LSTLKVNINKQKKDAFQILKPELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKE 297 (632)
Q Consensus 218 ~sTLKaNir~~k~e~f~~~k~~~~~~~~~npyfD~r~~~~~~k~~R~kR~~f~F~ekGKy~kqAe~lR~k~qlee~~~ee 297 (632)
.|+|..|++ ++ ... ...| +|++|+||++|+|++.|++.|.++++ ++
T Consensus 159 ~~~li~n~d-------------------------~~-~~~--~~~r-~rr~f~f~e~gkf~~~an~~r~~a~l-----e~ 204 (522)
T KOG2769|consen 159 LSGLIPNLD-------------------------PR-TKK--PRKR-GRRTFLFHESGKFIKLANRHRYKAQL-----ER 204 (522)
T ss_pred ccccccccC-------------------------hh-hcc--chhc-cccceeecccchHHHHHHHHHHHHHH-----HH
Confidence 888777654 33 111 2234 45699999999999999999987765 78
Q ss_pred HHHHHHHHHHhcCCCCCCCchhHHHhhhhccCCCCCCCCccccccccccCCCCCCCCCcccchhhhhccccccceeeCCC
Q 006766 298 RQAKQAQLAKAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPR 377 (632)
Q Consensus 298 lk~~~a~~akak~~~~i~~~l~ei~e~~~~k~~~~~~iP~VEWWD~~iL~~~~y~~i~~~~~~~~~i~~~~It~yVEHPV 377 (632)
|+.++++++++. ||++ ++.++...+ .++||+|||||.+||..+.|.+. +...+....||+|||||+
T Consensus 205 Lq~eis~~a~k~---gI~~-~~~la~~~p-----~~~iP~iEwwD~~il~~~d~~dE-----n~~~i~~~~it~~IeHP~ 270 (522)
T KOG2769|consen 205 LQNEISQAARKT---GIST-ATKLALIAP-----KDDIPAIEWWDSNILTNDDTIDE-----NHLKIDQSIITNLIEHPI 270 (522)
T ss_pred HHHHHHHHHHhc---CCch-hhhhhhccC-----CCCCchhhhhcccccccCCcccc-----cchhhhHHHHHHHhcCCc
Confidence 999999998853 5766 667777654 38999999999999988744332 123344578999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhhhhhhccccCCCChHHHHHHHH
Q 006766 378 PIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRS 457 (632)
Q Consensus 378 pi~pp~e~~~p~~~plyLTKKEqKKLRRqrR~e~~KEkQdKIRLGL~PPPpPKVKLSNLMrVLg~eAV~DPTkvEa~VR~ 457 (632)
||.||.++..|+++|+|||||||||||||||+|++||+|+||||||+|||+|||||||||+|||+|||||||+||++||.
T Consensus 271 ~~~PP~e~~~p~~l~vyLTKKErKKLRRQ~R~ea~KEkqekIrLGL~~ppePKVKiSNLMrVLgsEAiqDPTK~E~~VR~ 350 (522)
T KOG2769|consen 271 PMLPPAENLTPVSLPVYLTKKERKKLRRQRRKEARKEKQEKIRLGLEPPPEPKVKLSNLMRVLGSEAIQDPTKLEAEVRD 350 (522)
T ss_pred ccCCCcccCCCCccceeecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHhhhccccCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHhhhcCCCCCCceEEEEEEEcCCCCCccccccccccccccceeEEEecCCceE
Q 006766 458 AAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINV 537 (632)
Q Consensus 458 QmeeR~~~He~~NeeRKLT~EQRreKk~~K~~eD~~~~gv~~aVyrV~~LsnP~hrFKVd~NAqQl~LTG~cli~~~~nl 537 (632)
||++|+++||++|++||||+||||+|+.+|+.+|++ .||||+||+|++|+||++||||++||+||+||||||++.++||
T Consensus 351 Q~aeR~kaHe~~N~aRKLT~~qkreKk~rKl~ED~s-t~v~~~V~r~K~l~~p~~rFKve~NAkql~ltG~~vl~~d~~v 429 (522)
T KOG2769|consen 351 QMAERQKAHEDENAARKLTPEQKREKKERKLFEDPS-TGVHCSVYRIKNLQNPKKRFKVEMNAKQLQLTGVCVLHRDMNV 429 (522)
T ss_pred HHHHHHHHhhhhhhhhcCCHHHHHHHHHhhhccCCC-ceEEEEEEEEecccCCccceeeeechhhhceeeeEEEecCCcE
Confidence 999999999999999999999999999999999984 7999999999999999999999999999999999999999999
Q ss_pred EEEecchhHHHHHHHHHhhhcCCCccCcccCcCcccCCCCCCCeeEEEEeeecCCCCCCCeeeEecCCHHHHHHHHHhcC
Q 006766 538 VVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAG 617 (632)
Q Consensus 538 VVVEGG~KsiKkYkkLMl~RIkW~E~~~~~d~~~~e~~d~~~N~C~LVWEG~vk~r~F~~w~~k~c~te~~Are~L~~~~ 617 (632)
||||||+||||||++|||+||||+|++... .++|++.+..+|+|+|||||++.+|+|++|+|+.|+||.+||++|++||
T Consensus 430 vVvEGg~Ka~KkykrLMl~RIkW~e~~~~k-~d~~~e~~~~~N~C~lvWEG~~~rr~F~~~~~k~c~~e~~Ar~~f~k~g 508 (522)
T KOG2769|consen 430 VVVEGGPKAQKKYKRLMLKRIKWEEDFELK-KDEDEEAVNGGNKCVLVWEGTVQRRSFREFKFKECPTEKMAREFFEKHG 508 (522)
T ss_pred EEEecCHHHHHHHHHHHHhhcCchhhhhhc-ccchhhccCCCceEEEEeeccccCCcccceeEEecCcHHHHHHHHHHcc
Confidence 999999999999999999999999996322 2555677889999999999999999999999999999999999999999
Q ss_pred cchHHHHHhcccCC
Q 006766 618 VAHYWDLAVNFNDE 631 (632)
Q Consensus 618 vehYWDlA~~~~~~ 631 (632)
|+||||||++|+..
T Consensus 509 veHyWdLa~s~s~~ 522 (522)
T KOG2769|consen 509 VEHYWDLAYSYSVL 522 (522)
T ss_pred hHHHHHHHhhccCC
Confidence 99999999999863
No 2
>PF08572 PRP3: pre-mRNA processing factor 3 (PRP3); InterPro: IPR013881 Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated splicing factor. The human PRP3 has been implicated in autosomal retinitis pigmentosa [].
Probab=100.00 E-value=2.1e-72 Score=559.02 Aligned_cols=221 Identities=49% Similarity=0.805 Sum_probs=185.0
Q ss_pred CCCCCCCCCCCCcccccCCCccceeeccCchhHHHHHHHHHHhhhchHhHHHHHHHHHHHHHhcCCCCCCCchhHHHhhh
Q 006766 246 VNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKERQAKQAQLAKAKGGTDINPNLIEVAERV 325 (632)
Q Consensus 246 ~npyfD~r~~~~~~k~~R~kR~~f~F~ekGKy~kqAe~lR~k~qlee~~~eelk~~~a~~akak~~~~i~~~l~ei~e~~ 325 (632)
+||||||++... +..++++++|+||++|+|+++|+++|.+++++ +++.++++.++.. ++.++. .+.+..
T Consensus 1 ~npy~d~~~~~~--~~~~r~~r~l~F~e~Gk~~~~a~~~R~~~~~e-----~~~~~~~~~~~~~---g~~~~~-~~~~~~ 69 (223)
T PF08572_consen 1 ENPYFDPRLKKS--KPKKRKRRALKFHEKGKFIKQAEQLRRKAQLE-----ELKKEIAEEARKA---GIQSAE-KLAEKI 69 (223)
T ss_pred CCCCcCCccccc--ccccCCCCCceecCcchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHc---CCchhh-HHHHhh
Confidence 599999999822 23455567999999999999999999988763 4555665555533 344322 344555
Q ss_pred hccCCCCCCCCccccccccccCCCCCCCCCcccchhhhhccccccceeeCCCCCCCCCCCCCCCC--CCCCCCHHHHHHH
Q 006766 326 ITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPRPIEPPAEPAPPPP--QPLKLTKKEQKKL 403 (632)
Q Consensus 326 ~~k~~~~~~iP~VEWWD~~iL~~~~y~~i~~~~~~~~~i~~~~It~yVEHPVpi~pp~e~~~p~~--~plyLTKKEqKKL 403 (632)
+..+...++||+|||||.+||++++|++++++.....+..+..||+||||||||++|.+...+.+ +||||||||||||
T Consensus 70 ~~~~~~~~~iPdiEWWD~~~l~~~~y~~~~~~~~~~~~~~~~~It~~VeHPv~i~~p~~~~~~~~~~~~~~LTkkErKKl 149 (223)
T PF08572_consen 70 PKRELPEDEIPDIEWWDRPILPDPSYDDLNDESDLEIDEEESSITNYVEHPVPIKPPYEKNKPPPVVPPVYLTKKERKKL 149 (223)
T ss_pred cccccccccCCCccccchhhcCCCCccccccccchhcccchhhhhhhhhCCCCCCCccccccccccccCcccChHHHHHH
Confidence 55555668999999999999999999988765322222246789999999999999999665554 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccchhhhhhhhhccccCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCH
Q 006766 404 RTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTP 477 (632)
Q Consensus 404 RRqrR~e~~KEkQdKIRLGL~PPPpPKVKLSNLMrVLg~eAV~DPTkvEa~VR~QmeeR~~~He~~NeeRKLT~ 477 (632)
|||+|+++++|+||||||||+|||||||||||||||||++||+|||+||++||+||++|+++|+++|++||||+
T Consensus 150 Rr~rR~e~~kEkq~kIrlGL~ppP~PKVKlSNLMrVL~~eAV~DPT~vE~~Vr~Q~eeR~~~He~~N~~RkLt~ 223 (223)
T PF08572_consen 150 RRQRRQEKQKEKQDKIRLGLEPPPPPKVKLSNLMRVLGNEAVQDPTKVEAKVRKQMEERQQKHEERNEERKLTP 223 (223)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHhhcchhcCcHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996
No 3
>PF06544 DUF1115: Protein of unknown function (DUF1115); InterPro: IPR010541 This entry represents the C terminus of several eukaryotic RWD domain-containing proteins of unknown function.
Probab=100.00 E-value=5.4e-42 Score=313.87 Aligned_cols=128 Identities=44% Similarity=0.755 Sum_probs=117.8
Q ss_pred EEEEEEcCCCCCccccccccccccccceeEEEecCCceEEEEecchhHHHHHHHHHhhhcCCCccCcccCcCcccCCCCC
Q 006766 499 VSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKP 578 (632)
Q Consensus 499 ~aVyrV~~LsnP~hrFKVd~NAqQl~LTG~cli~~~~nlVVVEGG~KsiKkYkkLMl~RIkW~E~~~~~d~~~~e~~d~~ 578 (632)
|+||+|++|+||+|||||+.||+||+|||||++++++||||||||++||++|++||++||+|+|+....+..+++..+..
T Consensus 1 ~~~~~I~~L~~p~~R~kI~~nA~ql~LtG~~~~g~~pgiIvvEG~~k~i~~y~~lmlrri~W~e~~~~~~~~~e~~~~~~ 80 (128)
T PF06544_consen 1 CYVHHIKSLSNPKKRFKIDKNAKQLHLTGFCLPGPKPGIIVVEGGEKSIKEYKKLMLRRIKWNEPKKITVREEEDEEDDS 80 (128)
T ss_pred CEEEEeCcccCHHHHHHHHHHHHHhCCeEEEEEcCCcEEEEEECCHHHHHHHHHHHhceecccccccccccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999987654433333333347
Q ss_pred CCeeEEEEeeecCCCCCCCeeeEecCCHHHHHHHHHhcCcchHHHHHh
Q 006766 579 VNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAV 626 (632)
Q Consensus 579 ~N~C~LVWEG~vk~r~F~~w~~k~c~te~~Are~L~~~~vehYWDlA~ 626 (632)
+|+|.+||||++..++|++|+++.|.|+.+|+++|+++|++||||+|+
T Consensus 81 ~n~c~~vweg~~~~r~F~~~~~~~~~~~~~~~~~L~~~~~~~~~~~a~ 128 (128)
T PF06544_consen 81 DNSCSLVWEGTVKKRAFKGFREKECEDESEARKFLREHGLEHYFDLAL 128 (128)
T ss_pred CCceeEEEeccccccCCCCceEEeCCCHHHHHHHHHHCCCHHHHHhhC
Confidence 999999999999999999999999999999999999999999999985
No 4
>PF04940 BLUF: Sensors of blue-light using FAD; InterPro: IPR007024 An FAD-binding domain, BLUF, exemplified by the N terminus of the AppA protein, (Q53119 from SWISSPROT), from Rhodobacter sphaeroides, is present in various proteins, primarily from Bacteria. The BLUF domain is involved in sensing blue-light (and possibly redox) using FAD and is similar to the flavin-binding PAS domains and cryptochromes. The predicted secondary structure reveals that the BLUF domain is a novel FAD-binding fold [].; PDB: 2IYG_A 2IYI_B 1X0P_A 2HFN_G 3MZI_A 2HFO_E 3GFZ_A 3GG1_B 2KB2_A 3GFY_A ....
Probab=94.69 E-value=0.057 Score=47.93 Aligned_cols=66 Identities=18% Similarity=0.331 Sum_probs=52.9
Q ss_pred ccccccccceeEEEecCCceEEEEecchhHHHHHHHHHhhhcCCCccCcccCcCcccCCCCCCCeeEEEEeeecCCCCCC
Q 006766 517 DVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFN 596 (632)
Q Consensus 517 d~NAqQl~LTG~cli~~~~nlVVVEGG~KsiKkYkkLMl~RIkW~E~~~~~d~~~~e~~d~~~N~C~LVWEG~vk~r~F~ 596 (632)
..|-.++++||+-+++.+.-+=|+||.+.++.. +..||.=+. .-..|..+-.|++..|.|.
T Consensus 27 ~~~N~~~~iTG~Ll~~~~~F~Q~LEG~~~~v~~----l~~rI~~D~---------------RH~~v~~l~~~~i~~R~F~ 87 (93)
T PF04940_consen 27 RRNNRRHGITGFLLYDGGHFFQVLEGPEEAVDA----LFERIKQDP---------------RHSNVVVLFRGPIEERRFP 87 (93)
T ss_dssp HHHHHHHTEEEEEEEETTEEEEEEEEEHHHHHH----HHHHHHT-T---------------TEEEEEEEEEEEESS-SST
T ss_pred HHhhhhcCCEEEEEEeCCEEEEEEECCHHHHHH----HHHHHhcCC---------------CcCCeEEEEeeecCCccCC
Confidence 346678999999999999999999999999986 336664322 2346999999999999999
Q ss_pred CeeeE
Q 006766 597 RFFVH 601 (632)
Q Consensus 597 ~w~~k 601 (632)
+|.|.
T Consensus 88 ~W~M~ 92 (93)
T PF04940_consen 88 DWSMG 92 (93)
T ss_dssp SCSSE
T ss_pred CCcCC
Confidence 99986
No 5
>PRK14432 acylphosphatase; Provisional
Probab=67.55 E-value=6.1 Score=35.33 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=35.3
Q ss_pred cccccccccccccceeEEE-ecCCceEEEEe-cchhHHHHHHHHHhh
Q 006766 512 TRFKVDVNAHENRLTGCAV-ICEGINVVVVE-GGSKSIKRYGKLMLR 556 (632)
Q Consensus 512 hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVE-GG~KsiKkYkkLMl~ 556 (632)
-|+-+..-|++++|+|-|. +.++-=-|+++ |.+.++..|.+.+.+
T Consensus 17 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~~~v~~f~~~l~~ 63 (93)
T PRK14432 17 FRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTKEQMKKFEKLLKN 63 (93)
T ss_pred ehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHh
Confidence 4667778899999999885 55653457777 999999999886654
No 6
>PRK10455 periplasmic protein; Reviewed
Probab=66.47 E-value=28 Score=34.19 Aligned_cols=75 Identities=19% Similarity=0.365 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhhhhhhccccCCCChHHHHHHHHHHHHHHHHHHHHH
Q 006766 391 QPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRN 470 (632)
Q Consensus 391 ~plyLTKKEqKKLRRqrR~e~~KEkQdKIRLGL~PPPpPKVKLSNLMrVLg~eAV~DPTkvEa~VR~QmeeR~~~He~~N 470 (632)
..|-||...|.++|...+..+..-++ +.+--...|+.++..+.+ | |+.||.++++..+.|.++=
T Consensus 53 ~~L~LT~~Qrqqir~im~~~r~~~~~-----------~~~~~r~~l~~li~ad~F-D----eaavra~~~k~~~~~~~~~ 116 (161)
T PRK10455 53 KGLNLTDAQKQQIRDIMKAQRDQMKR-----------PPLEERRAMHDIIASDTF-D----KAKAEAQITKMEAQRKARM 116 (161)
T ss_pred hhCCCCHHHHHHHHHHHHHHHHhhcc-----------ccHHHHHHHHHHHccCcc-C----HHHHHHHHHHHHHHHHHHH
Confidence 45999999999999766654433210 011122345555554432 3 4555555554333333222
Q ss_pred Hh---------ccCCHHHHH
Q 006766 471 IA---------RKLTPAERR 481 (632)
Q Consensus 471 ee---------RKLT~EQRr 481 (632)
.+ --||||||.
T Consensus 117 ~~~~~~~~qiy~vLTPEQr~ 136 (161)
T PRK10455 117 LAHMETQNKIYNVLTPEQKK 136 (161)
T ss_pred HHHHHHHHHHHHhCCHHHHH
Confidence 22 269999985
No 7
>PRK14421 acylphosphatase; Provisional
Probab=66.40 E-value=6.4 Score=35.79 Aligned_cols=45 Identities=16% Similarity=0.040 Sum_probs=36.6
Q ss_pred ccccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHh
Q 006766 511 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 511 ~hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl 555 (632)
--|+=|...|.+++|+|.|. +.++-=-|+|+|.+.++..|.+.+.
T Consensus 18 GFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 63 (99)
T PRK14421 18 GYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCR 63 (99)
T ss_pred cchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHH
Confidence 35677888999999999885 5556456889999999999888774
No 8
>PRK14436 acylphosphatase; Provisional
Probab=66.13 E-value=6.3 Score=35.04 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=37.5
Q ss_pred ccccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHhh
Q 006766 511 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 556 (632)
Q Consensus 511 ~hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl~ 556 (632)
-.|+-+..-|.+++|+|.|. +.++-=-|+++|.+.++..|.+++.+
T Consensus 18 GFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14436 18 GFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAHQ 64 (91)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHhh
Confidence 35778888999999999885 55653468889999999999997754
No 9
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=66.06 E-value=30 Score=34.55 Aligned_cols=77 Identities=22% Similarity=0.387 Sum_probs=47.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhhhhhhccccCCCChHHHHHHHHHHHHHHHHHHH
Q 006766 389 PPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHID 468 (632)
Q Consensus 389 ~~~plyLTKKEqKKLRRqrR~e~~KEkQdKIRLGL~PPPpPKVKLSNLMrVLg~eAV~DPTkvEa~VR~QmeeR~~~He~ 468 (632)
....|-||...|..||...++.+.. -++++---..-|-.++..+.+ =|+.||.|+++..+++.+
T Consensus 45 MF~gLdLTdaQRqQmRdLm~~~r~~-----------~~~~~~~er~amh~LI~ad~F-----DEaavra~a~kma~~~~e 108 (166)
T PRK10363 45 MFDGISLTEHQRQQMRDLMQQARHE-----------QPPVNVSEMETMHRLVTAENF-----DENAVRAQAEKMAQEQVA 108 (166)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhc-----------ccccCHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHH
Confidence 3467999998888888776555431 111121123334455555554 366777777777766666
Q ss_pred HHHhc---------cCCHHHHH
Q 006766 469 RNIAR---------KLTPAERR 481 (632)
Q Consensus 469 ~NeeR---------KLT~EQRr 481 (632)
+-.+| =||||||.
T Consensus 109 ~~Vem~k~~nqmy~lLTPEQKa 130 (166)
T PRK10363 109 RQVEMAKVRNQMYRLLTPEQQA 130 (166)
T ss_pred HHHHHHHHHHHHHHhCCHHHHH
Confidence 65554 49999974
No 10
>PRK14430 acylphosphatase; Provisional
Probab=66.05 E-value=6.3 Score=35.16 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=36.4
Q ss_pred cccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHH
Q 006766 512 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLM 554 (632)
Q Consensus 512 hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLM 554 (632)
.|+-+...|++++|+|.|. +.++-=-|+++|.+.++..|...+
T Consensus 19 FR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l 62 (92)
T PRK14430 19 YRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM 62 (92)
T ss_pred eHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH
Confidence 5788889999999999985 555545699999999999988777
No 11
>PRK14420 acylphosphatase; Provisional
Probab=65.05 E-value=7.3 Score=34.34 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=37.6
Q ss_pred cccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHhhh
Q 006766 512 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLRR 557 (632)
Q Consensus 512 hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl~R 557 (632)
-|+-+-..|.+++|+|.|- ..++-=-|+++|.+.++..|.+.+..-
T Consensus 17 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~~ 63 (91)
T PRK14420 17 FRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPEEALQLFLDAIEKG 63 (91)
T ss_pred ChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 4677888899999999985 455545799999999999998888653
No 12
>PRK14452 acylphosphatase; Provisional
Probab=65.02 E-value=6.7 Score=36.17 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=39.6
Q ss_pred CCCccccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHhhh
Q 006766 508 SHPKTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLRR 557 (632)
Q Consensus 508 snP~hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl~R 557 (632)
.-=--|+-+...|.+++|+|-|. +.++-=-|+++|.+.++..|.+++.+-
T Consensus 31 QGVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~~ve~F~~~l~~g 81 (107)
T PRK14452 31 QGVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPLALSELRAWCERG 81 (107)
T ss_pred cCcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhcC
Confidence 33456888999999999999885 555545688899999999997777553
No 13
>PRK14441 acylphosphatase; Provisional
Probab=63.98 E-value=7.8 Score=34.56 Aligned_cols=45 Identities=13% Similarity=0.078 Sum_probs=36.4
Q ss_pred ccccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHh
Q 006766 511 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 511 ~hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl 555 (632)
--|+-+...|.+++|+|-|- ..++-=.|+++|.+.++..|..++.
T Consensus 19 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 64 (93)
T PRK14441 19 AFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCH 64 (93)
T ss_pred cchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 35777888999999999875 5555346889999999999888874
No 14
>PRK14424 acylphosphatase; Provisional
Probab=63.34 E-value=7.8 Score=34.86 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=38.4
Q ss_pred CccccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHh
Q 006766 510 PKTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 510 P~hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl 555 (632)
=-.|+-|...|.+++|+|.|- +.++-=-|+++|.+.++..|.+.+.
T Consensus 20 VGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~ 66 (94)
T PRK14424 20 VGFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLR 66 (94)
T ss_pred CchHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 356788889999999999885 5555457999999999999988884
No 15
>PRK14426 acylphosphatase; Provisional
Probab=62.95 E-value=7.6 Score=34.50 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=36.8
Q ss_pred ccccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHh
Q 006766 511 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 511 ~hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl 555 (632)
--|+-+..-|.+++|+|.|. +.++-=-|+++|.+..+..|.+.+-
T Consensus 18 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 63 (92)
T PRK14426 18 GFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLK 63 (92)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHh
Confidence 46788888999999999885 4555346888999999999988774
No 16
>PRK14445 acylphosphatase; Provisional
Probab=62.74 E-value=9.2 Score=33.86 Aligned_cols=45 Identities=24% Similarity=0.224 Sum_probs=36.8
Q ss_pred ccccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHh
Q 006766 511 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 511 ~hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl 555 (632)
--|+-+..-|.+++|+|.|- ..++-=-|+++|.+.++..|...+.
T Consensus 18 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~ 63 (91)
T PRK14445 18 GFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAE 63 (91)
T ss_pred CChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 35777888999999999885 5556446888999999999988884
No 17
>PRK14427 acylphosphatase; Provisional
Probab=62.59 E-value=8.4 Score=34.48 Aligned_cols=46 Identities=22% Similarity=0.256 Sum_probs=37.7
Q ss_pred ccccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHhh
Q 006766 511 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 556 (632)
Q Consensus 511 ~hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl~ 556 (632)
--|+=+...|.+++|+|.|. +.++-=-|+++|.+.++..|...+..
T Consensus 20 GFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~i~~f~~~l~~ 66 (94)
T PRK14427 20 GFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGEQVEKLLDWLNS 66 (94)
T ss_pred CChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHhh
Confidence 35788889999999999885 55553468899999999999888765
No 18
>PRK14449 acylphosphatase; Provisional
Probab=61.58 E-value=8.7 Score=33.95 Aligned_cols=45 Identities=29% Similarity=0.359 Sum_probs=37.5
Q ss_pred cccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHhh
Q 006766 512 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 556 (632)
Q Consensus 512 hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl~ 556 (632)
-|+-|...|.+++|+|.|. +.++-=-|+++|.+.++..|.+.+..
T Consensus 18 FR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14449 18 LRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDEENIKELINFIKT 63 (90)
T ss_pred hHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 5777888999999999885 55564578999999999999888854
No 19
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=61.44 E-value=8.3 Score=33.63 Aligned_cols=53 Identities=19% Similarity=0.114 Sum_probs=40.3
Q ss_pred CCCccccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHhhhcCC
Q 006766 508 SHPKTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLRRIDW 560 (632)
Q Consensus 508 snP~hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl~RIkW 560 (632)
..=--|+-|..-|++++|+|.|- ..++---|+++|.+..+..|.+.+..--.+
T Consensus 15 QGVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~g~p~ 68 (91)
T PF00708_consen 15 QGVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKKGPPP 68 (91)
T ss_dssp SSSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHHSSTT
T ss_pred CcCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHhCCCC
Confidence 33446777888899999999885 556656799999999999999988875333
No 20
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=61.31 E-value=9.6 Score=34.35 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=39.7
Q ss_pred CCCCccccccccccccccceeEEEecCCc-eEEEEecchhHHHHHHHHHh
Q 006766 507 LSHPKTRFKVDVNAHENRLTGCAVICEGI-NVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 507 LsnP~hrFKVd~NAqQl~LTG~cli~~~~-nlVVVEGG~KsiKkYkkLMl 555 (632)
...=-.|+-+..=|..|+|+|.+--.+|- =-||++|-+.++.+|...+-
T Consensus 14 VQGVGFR~~~~~~A~~lgl~G~V~N~~DGsVeiva~G~~~~v~~~~~~l~ 63 (92)
T COG1254 14 VQGVGFRYFTRSEALRLGLTGWVKNLDDGSVEIVAEGPDEAVEKFIEWLR 63 (92)
T ss_pred eccccHHHHHHHHHHHCCCEEEEEECCCCeEEEEEEcCHHHHHHHHHHHH
Confidence 34445688888899999999999755544 45999999999999988887
No 21
>PRK14442 acylphosphatase; Provisional
Probab=60.90 E-value=9.7 Score=33.84 Aligned_cols=45 Identities=22% Similarity=0.175 Sum_probs=36.7
Q ss_pred ccccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHh
Q 006766 511 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 511 ~hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl 555 (632)
--|+=+..-|.+++|+|-|- +.++-=-|+++|.+.++..|.+++.
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (91)
T PRK14442 18 GFRQATREEADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLG 63 (91)
T ss_pred cccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHh
Confidence 35677788899999999884 6666456888999999999988884
No 22
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=60.55 E-value=43 Score=33.16 Aligned_cols=79 Identities=15% Similarity=0.291 Sum_probs=48.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccc-hhhhhhhhhccccCCCChHHHHHHHHHHHHHHHHH--
Q 006766 390 PQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKV-KMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAH-- 466 (632)
Q Consensus 390 ~~plyLTKKEqKKLRRqrR~e~~KEkQdKIRLGL~PPPpPKV-KLSNLMrVLg~eAV~DPTkvEa~VR~QmeeR~~~H-- 466 (632)
...+-||...|..||...+..+... | .+.. -..-|-.++..+. =||.+|++.+.++.+.+...+
T Consensus 52 f~~l~LTd~QR~qmr~im~~~r~~~----------~--~~~~~~~~~m~~Li~Ad~-FDeaAvra~~~kma~~~~e~~v~ 118 (162)
T PRK12751 52 FDGINLTEQQRQQMRDLMRQSHQSQ----------P--RLDLEDREAMHKLITADK-FDEAAVRAQAEKMSQNQIERHVE 118 (162)
T ss_pred hccCCCCHHHHHHHHHHHHHhhhcc----------c--chhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999998777665531 1 1111 1222444555555 599999888776655554333
Q ss_pred --HHHHHh-ccCCHHHHH
Q 006766 467 --IDRNIA-RKLTPAERR 481 (632)
Q Consensus 467 --e~~Nee-RKLT~EQRr 481 (632)
+.+|+- .-||||||.
T Consensus 119 ~~~~~~qmy~lLTPEQra 136 (162)
T PRK12751 119 MAKVRNQMYNLLTPEQKE 136 (162)
T ss_pred HHHHHHHHHHcCCHHHHH
Confidence 333433 359999974
No 23
>PRK14429 acylphosphatase; Provisional
Probab=60.39 E-value=9.6 Score=33.70 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=37.6
Q ss_pred cccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHhhh
Q 006766 512 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLRR 557 (632)
Q Consensus 512 hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl~R 557 (632)
-|+-+..-|++++|+|.|. +.++-=.|+++|.+.++..|...+.+.
T Consensus 17 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~g 63 (90)
T PRK14429 17 CRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEVG 63 (90)
T ss_pred eHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhhC
Confidence 4677778899999999885 555545789999999999999888654
No 24
>PRK14440 acylphosphatase; Provisional
Probab=60.26 E-value=9.5 Score=33.88 Aligned_cols=44 Identities=23% Similarity=0.230 Sum_probs=35.4
Q ss_pred cccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHh
Q 006766 512 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 512 hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl 555 (632)
-|+-+...|.+++|+|.|. +.++-=-|+++|.+.++..|.+.+.
T Consensus 18 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 62 (90)
T PRK14440 18 FRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIK 62 (90)
T ss_pred chHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHh
Confidence 5777888999999999874 4555346889999999999887664
No 25
>PRK14435 acylphosphatase; Provisional
Probab=60.08 E-value=9.1 Score=33.94 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=36.2
Q ss_pred cccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHh
Q 006766 512 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 512 hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl 555 (632)
-|+-|...|.+++|+|.|. +.++-=-|+++|.+..+..|.+.+.
T Consensus 17 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 61 (90)
T PRK14435 17 FRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDENALRRFLNEVA 61 (90)
T ss_pred ChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 5777888999999999886 4455456889999999999888774
No 26
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=59.79 E-value=58 Score=28.13 Aligned_cols=79 Identities=25% Similarity=0.302 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH--HHHHHcCCCCCCCccchhhhhhhhhccccCCCChHHHHHHHHHHHH----HHHH
Q 006766 392 PLKLTKKEQKKLRTQRRLAREKDR--QEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAE----REQA 465 (632)
Q Consensus 392 plyLTKKEqKKLRRqrR~e~~KEk--QdKIRLGL~PPPpPKVKLSNLMrVLg~eAV~DPTkvEa~VR~Qmee----R~~~ 465 (632)
.+-||...+.++|...+....+-. +..++ .+-.-|...|..+ --||-++++.+++-.+. +...
T Consensus 39 ~l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~----------~~r~~l~~ll~~~-~~D~~~i~a~~~~~~~~~~~l~~~~ 107 (125)
T PF13801_consen 39 MLNLTPEQQAKLRALMDEFRQEMRALRQELR----------AARQELRALLAAP-PPDEAAIEALLEEIREAQAELRQER 107 (125)
T ss_dssp HS-TTHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHCCS-SS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999976554433222 22222 2333445555554 45777887766554333 2333
Q ss_pred HHHHHHhcc-CCHHHHH
Q 006766 466 HIDRNIARK-LTPAERR 481 (632)
Q Consensus 466 He~~NeeRK-LT~EQRr 481 (632)
++...+.++ ||||||.
T Consensus 108 ~~~~~~~~~~LtpeQR~ 124 (125)
T PF13801_consen 108 LEHLLEIRAVLTPEQRA 124 (125)
T ss_dssp HHHHHHHHHTT-GGGHH
T ss_pred HHHHHHHHHcCCHHHhC
Confidence 333444444 9999985
No 27
>PRK14448 acylphosphatase; Provisional
Probab=58.65 E-value=10 Score=33.68 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=36.6
Q ss_pred cccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHh
Q 006766 512 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 512 hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl 555 (632)
.|+-+...|.+++|+|.|. +.++-=-|+++|.+.++..|.+.+.
T Consensus 17 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 61 (90)
T PRK14448 17 FRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQ 61 (90)
T ss_pred hHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 5777888999999999885 5555447899999999999988884
No 28
>PRK14437 acylphosphatase; Provisional
Probab=58.49 E-value=9.9 Score=35.17 Aligned_cols=48 Identities=25% Similarity=0.171 Sum_probs=38.7
Q ss_pred CCCccccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHh
Q 006766 508 SHPKTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 508 snP~hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl 555 (632)
.-=--|+=+...|++++|+|-|. +.++-=.|+|+|.+.++..|...+-
T Consensus 34 QGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~ 82 (109)
T PRK14437 34 QGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLW 82 (109)
T ss_pred CCcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 44457888999999999999885 5666457888999999999887773
No 29
>PRK14433 acylphosphatase; Provisional
Probab=58.31 E-value=11 Score=33.24 Aligned_cols=44 Identities=30% Similarity=0.332 Sum_probs=35.6
Q ss_pred cccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHh
Q 006766 512 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 512 hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl 555 (632)
.|+=+-..|.+++|+|.|. +.++-=-|+++|.+.++..|.+.+.
T Consensus 16 FR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 60 (87)
T PRK14433 16 YRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKEALERLLHWLR 60 (87)
T ss_pred chHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 4666778899999999875 5555346889999999999888874
No 30
>PRK14438 acylphosphatase; Provisional
Probab=56.57 E-value=12 Score=33.25 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=35.2
Q ss_pred cccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHh
Q 006766 512 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 512 hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl 555 (632)
-|+=+...|.+++|+|-|. +.++-=.|+++|.+.++..|.+.+.
T Consensus 18 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (91)
T PRK14438 18 FRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEETDVAALIDWCH 62 (91)
T ss_pred ccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 4666778899999999885 5555447899999999999877763
No 31
>PRK14423 acylphosphatase; Provisional
Probab=56.20 E-value=12 Score=33.25 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=36.8
Q ss_pred cccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHhhh
Q 006766 512 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLRR 557 (632)
Q Consensus 512 hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl~R 557 (632)
-|+=+...|++++|+|.+. +.++-=-|+++|.+.++..|...+.+.
T Consensus 20 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~g 66 (92)
T PRK14423 20 YRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRDAVEAMVEWCHEG 66 (92)
T ss_pred ehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHhC
Confidence 4677788899999999885 555644678999999999888877644
No 32
>PRK14450 acylphosphatase; Provisional
Probab=55.85 E-value=12 Score=33.05 Aligned_cols=43 Identities=28% Similarity=0.288 Sum_probs=34.6
Q ss_pred cccccccccccccceeEEE-ecCCc-eEEEEecchhHHHHHHHHH
Q 006766 512 TRFKVDVNAHENRLTGCAV-ICEGI-NVVVVEGGSKSIKRYGKLM 554 (632)
Q Consensus 512 hrFKVd~NAqQl~LTG~cl-i~~~~-nlVVVEGG~KsiKkYkkLM 554 (632)
-|+-+...|.+++|+|.|. +.++- =-|+++|.+.++..|...+
T Consensus 17 FR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l 61 (91)
T PRK14450 17 FRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLL 61 (91)
T ss_pred cHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHH
Confidence 5677888899999999874 55662 3467999999999988877
No 33
>PRK14422 acylphosphatase; Provisional
Probab=55.25 E-value=14 Score=33.10 Aligned_cols=47 Identities=28% Similarity=0.285 Sum_probs=38.2
Q ss_pred CccccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHhh
Q 006766 510 PKTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 556 (632)
Q Consensus 510 P~hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl~ 556 (632)
=-.|+=+..-|.+++|+|.|- +.++-=-|+++|.+.++..|.+.+..
T Consensus 19 VGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 66 (93)
T PRK14422 19 VGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG 66 (93)
T ss_pred cCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 346778888999999999885 56663468899999999999888764
No 34
>PRK14451 acylphosphatase; Provisional
Probab=54.67 E-value=13 Score=32.87 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=37.3
Q ss_pred ccccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHhh
Q 006766 511 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 556 (632)
Q Consensus 511 ~hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl~ 556 (632)
--|+-+...|.+++|+|-|- ..++-=-|+++|.+.++..|.+.+.+
T Consensus 17 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (89)
T PRK14451 17 WFRASAKKLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQK 63 (89)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 35777888999999999885 55664568889999999998888753
No 35
>PRK14425 acylphosphatase; Provisional
Probab=53.74 E-value=14 Score=33.12 Aligned_cols=45 Identities=18% Similarity=0.092 Sum_probs=36.8
Q ss_pred ccccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHh
Q 006766 511 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 511 ~hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl 555 (632)
--|+-+...|++++|+|-+. +.++-=-|+++|.+.++..|.+.+.
T Consensus 20 GFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~ 65 (94)
T PRK14425 20 GFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFR 65 (94)
T ss_pred cchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh
Confidence 35788889999999999885 5666456888999999998887773
No 36
>PRK14443 acylphosphatase; Provisional
Probab=53.63 E-value=15 Score=33.07 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=37.3
Q ss_pred cccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHhh
Q 006766 512 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 556 (632)
Q Consensus 512 hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl~ 556 (632)
-|+-+...|.+++|+|-|. +.++-=-|+++|.+..+..|.+.+..
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (93)
T PRK14443 19 FRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK 64 (93)
T ss_pred CcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc
Confidence 5777888999999999885 66665578889999999999888854
No 37
>PRK14444 acylphosphatase; Provisional
Probab=53.52 E-value=15 Score=32.69 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=37.2
Q ss_pred cccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHhhh
Q 006766 512 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLRR 557 (632)
Q Consensus 512 hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl~R 557 (632)
-|+=+..-|++++|+|-|- +.++-=-|+++|.+..+..|...+.+.
T Consensus 19 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~g 65 (92)
T PRK14444 19 FRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCYSG 65 (92)
T ss_pred cHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHHhC
Confidence 5677778899999999875 566645799999999999998886643
No 38
>PF08690 GET2: GET complex subunit GET2; InterPro: IPR014802 This family corresponds to the GET complex subunit GET2. The GET complex is involved in the retrieval of ER resident proteins from the Golgi []. ; PDB: 3SJD_D 3ZS9_C.
Probab=52.98 E-value=11 Score=40.55 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHHHHH-----HHHHHHH
Q 006766 395 LTKKEQKKLRTQRRLAREK-----DRQEMIR 420 (632)
Q Consensus 395 LTKKEqKKLRRqrR~e~~K-----EkQdKIR 420 (632)
||..||+||||.||++|-+ ++=+||-
T Consensus 2 ls~aEkrRLrRERReAKi~~GgaSaRLnKIT 32 (302)
T PF08690_consen 2 LSEAEKRRLRRERREAKIKAGGASARLNKIT 32 (302)
T ss_dssp --HHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCcHHHHHHHh
Confidence 7899999999999999986 3556664
No 39
>PRK14446 acylphosphatase; Provisional
Probab=52.19 E-value=17 Score=32.38 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=34.8
Q ss_pred ccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHh
Q 006766 513 RFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 513 rFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl 555 (632)
|+=+...|++++|+|-|. ..++-=-|+++|.+.++..|-.++.
T Consensus 18 R~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~l~~f~~~l~ 61 (88)
T PRK14446 18 RASTRERAVALGLVGHARNQADGSVEVVAAGSAAALEALEAWLW 61 (88)
T ss_pred hHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHHHHHHHHHHHh
Confidence 566777899999999885 5666457888999999998877775
No 40
>PRK14434 acylphosphatase; Provisional
Probab=46.17 E-value=21 Score=31.86 Aligned_cols=45 Identities=13% Similarity=0.156 Sum_probs=34.9
Q ss_pred ccccccccccccc-ceeEEE-ecCCceEEEEecch-hHHHHHHHHHhh
Q 006766 512 TRFKVDVNAHENR-LTGCAV-ICEGINVVVVEGGS-KSIKRYGKLMLR 556 (632)
Q Consensus 512 hrFKVd~NAqQl~-LTG~cl-i~~~~nlVVVEGG~-KsiKkYkkLMl~ 556 (632)
-|+-|...|++++ |+|-|. ..++-=.|+++|.+ .++..|-..+.+
T Consensus 17 FR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~ 64 (92)
T PRK14434 17 FRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK 64 (92)
T ss_pred EhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence 3667788899999 999885 55564468889987 699988877754
No 41
>PRK14428 acylphosphatase; Provisional
Probab=45.84 E-value=22 Score=32.27 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=36.9
Q ss_pred CccccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHh
Q 006766 510 PKTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 510 P~hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl 555 (632)
=--|+-+..-|++++|+|.|. ..++-=-|+++|.+.++..|-..+.
T Consensus 21 VGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~~~i~~fi~~l~ 67 (97)
T PRK14428 21 VGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSSDAVQALVEQLA 67 (97)
T ss_pred ccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCHHHHHHHHHHHh
Confidence 345777888999999999885 5556457889999999998877764
No 42
>PRK14439 acylphosphatase; Provisional
Probab=45.80 E-value=21 Score=35.52 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=38.2
Q ss_pred ccccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHhh
Q 006766 511 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 556 (632)
Q Consensus 511 ~hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl~ 556 (632)
-.|+-+...|.|++|+|-|. +.+|-=-|+++|.+.++..|.+.+.+
T Consensus 89 GFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~ 135 (163)
T PRK14439 89 GFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKS 135 (163)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 35778888999999999884 56664468889999999999988875
No 43
>PRK14431 acylphosphatase; Provisional
Probab=45.24 E-value=29 Score=30.82 Aligned_cols=44 Identities=11% Similarity=0.196 Sum_probs=35.1
Q ss_pred cccccccccccccceeEEE-ecCCceEEEEecchhHHHHHHHHHhh
Q 006766 512 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 556 (632)
Q Consensus 512 hrFKVd~NAqQl~LTG~cl-i~~~~nlVVVEGG~KsiKkYkkLMl~ 556 (632)
-|+=+..-|++++|+|-|. ..++ =.|+++|.+.++..|...+.+
T Consensus 17 FR~~~~~~A~~~gl~G~V~N~~dg-Vei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 17 FRYFTQRIAMNYNIVGTVQNVDDY-VEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred EhHHHHHHHhhcCCEEEEEECCCc-EEEEEEcCHHHHHHHHHHHhc
Confidence 3566777899999999885 4444 468999999999999887765
No 44
>PRK14447 acylphosphatase; Provisional
Probab=44.53 E-value=25 Score=31.53 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=35.1
Q ss_pred cccccccccccccceeEEE-ecCC-ceEEEEecchhHHHHHHHHHh
Q 006766 512 TRFKVDVNAHENRLTGCAV-ICEG-INVVVVEGGSKSIKRYGKLML 555 (632)
Q Consensus 512 hrFKVd~NAqQl~LTG~cl-i~~~-~nlVVVEGG~KsiKkYkkLMl 555 (632)
-|+=+...|++++|+|.+- +.++ -=-|+++|.+.++..|-.++.
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~~~~l~~f~~~l~ 64 (95)
T PRK14447 19 FRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGPRDAVLKVIEWAR 64 (95)
T ss_pred chHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 5677888899999999885 5555 235778999999999888664
No 45
>KOG3360 consensus Acylphosphatase [Energy production and conversion]
Probab=37.51 E-value=68 Score=29.69 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=47.2
Q ss_pred cccccccceeEEEec-CCceEEEEecchhHHHHHHHHHhhhcCCCccCcccCcCcccCCCCCCCeeEEEEeeecCCCCCC
Q 006766 518 VNAHENRLTGCAVIC-EGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFN 596 (632)
Q Consensus 518 ~NAqQl~LTG~cli~-~~~nlVVVEGG~KsiKkYkkLMl~RIkW~E~~~~~d~~~~e~~d~~~N~C~LVWEG~vk~r~F~ 596 (632)
.+|++|+|+|-|.=. ++---=-+||-+..+..++.+++.|=.= ...-.+|+.-=++++.+..|.
T Consensus 29 ~~a~~lGlrGWv~Nt~~GtvkG~leGp~~~vd~mk~wl~~~gsP---------------~s~I~~~ef~n~kei~~~~y~ 93 (98)
T KOG3360|consen 29 DEAKKLGLRGWVMNTSEGTVKGQLEGPPEKVDEMKEWLLTRGSP---------------VSAIDRAEFSNQKEISRYTYK 93 (98)
T ss_pred HHHHhhcceEEEEecCCceEEEEEeCCHHHHHHHHHHHHhcCCh---------------hHheeeeeecccceecccccc
Confidence 489999999999644 4544457899999999999999977111 111224444445667777777
Q ss_pred Ceee
Q 006766 597 RFFV 600 (632)
Q Consensus 597 ~w~~ 600 (632)
.|.+
T Consensus 94 ~F~I 97 (98)
T KOG3360|consen 94 DFSI 97 (98)
T ss_pred eeee
Confidence 7754
No 46
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=29.94 E-value=2.2e+02 Score=28.29 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=12.7
Q ss_pred CCCCCCHHHHHHHHHHH
Q 006766 391 QPLKLTKKEQKKLRTQR 407 (632)
Q Consensus 391 ~plyLTKKEqKKLRRqr 407 (632)
..|-||...+.+||..+
T Consensus 49 ~~L~LTdeQk~qik~i~ 65 (170)
T PRK12750 49 RQLDLTDAQKEQLKEMR 65 (170)
T ss_pred hhCCCCHHHHHHHHHHH
Confidence 45889988888876544
No 47
>PHA00431 internal virion protein C
Probab=28.87 E-value=47 Score=39.32 Aligned_cols=49 Identities=33% Similarity=0.452 Sum_probs=31.7
Q ss_pred HHHHHHHHHH-hccCCHHHHHHHHHhhhcCCCCCCceEEEEEEEcCCCCCccccccccccc
Q 006766 462 REQAHIDRNI-ARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAH 521 (632)
Q Consensus 462 R~~~He~~Ne-eRKLT~EQRreKk~~K~~eD~~~~gv~~aVyrV~~LsnP~hrFKVd~NAq 521 (632)
+.++.|+-|+ -|||||||||+-.. | | +.+|-=+.-.=-..|||...||-
T Consensus 66 k~~AdERSNEIIRKLTPEQrReAi~-----n----G--TLLYQDDPYAMeALr~KtGRnaA 115 (746)
T PHA00431 66 KDKADERSNEIIRKLTPEQRREAIK-----N----G--TLLYQDDPYAMEALRFKTGRNAA 115 (746)
T ss_pred HHhHhhhHHHHHHhcCHHHHHHHHh-----c----C--ceeecCCHHHHHHHHHHhccchh
Confidence 4456777776 59999999987542 1 2 44555444444456788777763
No 48
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=26.32 E-value=57 Score=34.11 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=35.0
Q ss_pred hccccCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q 006766 440 LGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAE 479 (632)
Q Consensus 440 Lg~eAV~DPTkvEa~VR~QmeeR~~~He~~NeeRKLT~EQ 479 (632)
+.++..--||-|-+.+|.|.+|+..+..+.|.+|+.-+.|
T Consensus 231 Ykn~~~vs~~~vra~ir~qaae~~~~R~es~~er~vr~~~ 270 (283)
T COG5154 231 YKNETFVSSTMVRAAIRNQAAENLFARKESNLERQVRAQQ 270 (283)
T ss_pred eecccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhc
Confidence 4577788899999999999999999999999999875544
No 49
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=25.00 E-value=1.1e+02 Score=35.71 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=15.1
Q ss_pred CCcchHHHHHHHHHHHHHHHH
Q 006766 66 GSLSLDALAKAKKALQMQKEL 86 (632)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l 86 (632)
|+-.-+-.+..+.|||.=+||
T Consensus 237 G~~~~~n~~~Vk~ALq~YqEL 257 (574)
T PF07462_consen 237 GNDHAKNIAEVKEALQAYQEL 257 (574)
T ss_pred CCChhhhHHHHHHHHHHHHHh
Confidence 344455667789999988887
No 50
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.09 E-value=85 Score=33.95 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=7.5
Q ss_pred HHHhhhhhHHHH
Q 006766 31 QLLWHRGLRLIL 42 (632)
Q Consensus 31 ~~~~~~~~~~~~ 42 (632)
|||||--.-+++
T Consensus 192 eLlW~~F~e~ll 203 (298)
T KOG2879|consen 192 ELLWNAFREVLL 203 (298)
T ss_pred HHHHHHHHHHHH
Confidence 899995443333
No 51
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=22.70 E-value=53 Score=28.00 Aligned_cols=19 Identities=37% Similarity=0.704 Sum_probs=15.6
Q ss_pred EecCCCCeeccCCCeeecc
Q 006766 195 RVDALGREIDEHGNVVNRT 213 (632)
Q Consensus 195 ~LD~~GR~ID~~G~vI~~~ 213 (632)
.+|++|..+|.+|++|-..
T Consensus 38 ~vd~~G~I~d~~G~viGka 56 (64)
T PF12396_consen 38 KVDEDGDILDKDGNVIGKA 56 (64)
T ss_pred cCCCCCCEECCCCCEEEEE
Confidence 4789999999999998643
No 52
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=21.80 E-value=2e+02 Score=28.28 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=14.3
Q ss_pred cCCCChHHHHHHHHHHHHH
Q 006766 444 ATQDPTRLEKEIRSAAAER 462 (632)
Q Consensus 444 AV~DPTkvEa~VR~QmeeR 462 (632)
-..|++.+|+---+||+.=
T Consensus 79 ~p~d~~e~E~~Fl~eV~~G 97 (148)
T TIGR00985 79 DPTDPSEKEAFFLQEVQLG 97 (148)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 3567888888888888754
No 53
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=20.89 E-value=3.7e+02 Score=31.06 Aligned_cols=27 Identities=37% Similarity=0.380 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHH-HHHHHHHHhccc
Q 006766 69 SLDALAKAKKALQMQ-KELSEKLKKIAT 95 (632)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 95 (632)
.+.+|.+--.+||.| +||..+|..-|.
T Consensus 26 ~i~~L~~ql~aLq~~v~eL~~~laa~~~ 53 (514)
T PF11336_consen 26 QIKALQAQLQALQDQVNELRAKLAAKPA 53 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456777666677666 355556654443
Done!