BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006770
(632 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 221 bits (564), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 148/366 (40%), Positives = 196/366 (53%), Gaps = 24/366 (6%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
MNV+ V AE PWSKTGGLGDV G LP A+A GHRVMV++P Y Y + DT + +
Sbjct: 10 MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRH-----LGNNIYGGGR----EDILKRMVLFC 388
V + V +F Y GVD VF+D P F G IYG +D R L C
Sbjct: 70 VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLC 129
Query: 389 KAAIEIPWYVPCGGVCYGDG----NLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLV 444
+AA+E P + Y G ++VF+ NDWHT L YLK Y+ NG+ + +
Sbjct: 130 QAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFC 189
Query: 445 IHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYD----PVGGEHFNIFAAGLKTADRVVTVS 500
IHNI++QGR D+ +L + F D PV G N AG+ ADRV+TVS
Sbjct: 190 IHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVS 249
Query: 501 RGYSWELKTAEG-GWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDT 559
Y+ EL + G L NI+ ++GIVNG+D EW P D ++T+ Y T
Sbjct: 250 PYYAEELISGIARGCELDNIMRLTG--ITGIVNGMDVSEWDPSKDKYITA----KYDATT 303
Query: 560 LHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVG 619
K K ALQ E GLPV +P+I FIGRL+ QKG D++A AIP +M +DVQ+ +G
Sbjct: 304 AIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLG 363
Query: 620 HWQTRF 625
+ +F
Sbjct: 364 TGKKKF 369
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 154/335 (45%), Gaps = 29/335 (8%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
MNV+ V++E P KTGGL DV GALP AL G R + P Y ++
Sbjct: 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEF 60
Query: 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGG--GRE--DILKRMVLFCKAAIE 393
D + + + +D + LD+P + Y G G++ D KR AA
Sbjct: 61 TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAAR 120
Query: 394 IPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGR 453
I GV G + A+DW A+ PVY++ Y + + SLL IHNIA QG+
Sbjct: 121 I-----GAGVLPGWRPDMVHAHDWQAAMTPVYMR--YAETPEIP---SLLTIHNIAFQGQ 170
Query: 454 GPVSDFVYTDLPGHYLDLFKLYDPVGGEHFN---IFAAGLKTADRVVTVSRGYSWELKTA 510
+ F LP H + G E++N GL+TA + TVS Y+ E+ TA
Sbjct: 171 FGANIFSKLALPAHAFGM------EGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTA 224
Query: 511 EGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAA 570
E G GL +I L GIVNGID W+P D HL D Y+ L + K A
Sbjct: 225 EFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATD-HLIHDNYSAANLKN----RALNKKA 279
Query: 571 LQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAI 605
+ F + D P+ I RL QKG+DL+AEA+
Sbjct: 280 VAEHFRID-DDGSPLFCVISRLTWQKGIDLMAEAV 313
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 166/358 (46%), Gaps = 46/358 (12%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+ V++E P KTGGL DV GALP A G V+ P + + G+
Sbjct: 1 MQVLHVSSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRR----GVTDAQV 56
Query: 338 VDRQDI---EVAYFQAYIDGVDFVFLDSP-LFRHLGN-----NIYGGGREDILKRMVLFC 388
V R+D + + +GV +D+P L+ G+ N++ D + R L
Sbjct: 57 VSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFA--YTDNVLRFALLG 114
Query: 389 KAAIEI-----PWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLL 443
E+ P++ P V A+DWH L P YL A R +S+
Sbjct: 115 WVGAEMASGLDPFWRPD----------VVHAHDWHAGLAPAYLAARGRP------AKSVF 158
Query: 444 VIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGY 503
+HN+A+QG LP + ++ L G+ + AGL AD + VS Y
Sbjct: 159 TVHNLAYQGMFYAHHMNDIQLPWSFFNIHGL--EFNGQ-ISFLKAGLYYADHITAVSPTY 215
Query: 504 SWELKTAEGGWGLHNIINEV--DWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLH 561
+ E+ + +G+ ++ + + +LSG++NG+D K WSP D+ L S Y DTL
Sbjct: 216 AREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLAS----RYTRDTLE 271
Query: 562 TGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVG 619
K + K LQ GL V D VP+ + RL QKG+DL+ EA+P ++ Q QL+ +G
Sbjct: 272 D-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLG 328
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 165/358 (46%), Gaps = 46/358 (12%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+ V +E P KTGGL DV GALP A G V+ P + + G+
Sbjct: 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRR----GVTDAQV 56
Query: 338 VDRQDI---EVAYFQAYIDGVDFVFLDSP-LFRHLGN-----NIYGGGREDILKRMVLFC 388
V R+D + + +GV +D+P L+ G+ N++ D + R L
Sbjct: 57 VSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFA--YTDNVLRFALLG 114
Query: 389 KAAIEI-----PWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLL 443
E+ P++ P V A+DWH L P YL A R +S+
Sbjct: 115 WVGAEMASGLDPFWRPD----------VVHAHDWHAGLAPAYLAARGRP------AKSVF 158
Query: 444 VIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGY 503
+HN+A+QG LP + ++ L G+ + AGL AD + VS Y
Sbjct: 159 TVHNLAYQGMFYAHHMNDIQLPWSFFNIHGL--EFNGQ-ISFLKAGLYYADHITAVSPTY 215
Query: 504 SWELKTAEGGWGLHNIINEV--DWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLH 561
+ E+ + +G+ ++ + + +LSG++NG+D K WSP D+ L S Y DTL
Sbjct: 216 AREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLAS----RYTRDTLE 271
Query: 562 TGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVG 619
K + K LQ GL V D VP+ + RL QKG+DL+ EA+P ++ Q QL+ +G
Sbjct: 272 D-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLG 328
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 165/358 (46%), Gaps = 46/358 (12%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+ V +E P KTGGL DV GALP A G V+ P + + G+
Sbjct: 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRR----GVTDAQV 56
Query: 338 VDRQDI---EVAYFQAYIDGVDFVFLDSP-LFRHLGN-----NIYGGGREDILKRMVLFC 388
V R+D + + +GV +D+P L+ G+ N++ D + R L
Sbjct: 57 VSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFA--YTDNVLRFALLG 114
Query: 389 KAAIEI-----PWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLL 443
E+ P++ P V A+DWH L P YL A R +S+
Sbjct: 115 WVGAEMASGLDPFWRPD----------VVHAHDWHAGLAPAYLAARGRP------AKSVF 158
Query: 444 VIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGY 503
+HN+A+QG LP + ++ L G+ + AGL AD + VS Y
Sbjct: 159 TVHNLAYQGMFYAHHMNDIQLPWSFFNIHGL--EFNGQ-ISFLKAGLYYADHITAVSPTY 215
Query: 504 SWELKTAEGGWGLHNIINEV--DWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLH 561
+ E+ + +G+ ++ + + +LSG++NG+D K WSP D+ L S Y DTL
Sbjct: 216 AREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLAS----RYTRDTLE 271
Query: 562 TGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVG 619
K + K LQ GL V D VP+ + RL QKG+DL+ EA+P ++ Q QL+ +G
Sbjct: 272 D-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLG 328
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 149/334 (44%), Gaps = 29/334 (8%)
Query: 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRV 338
NV+ V++E P KTGGL DV GALP AL G R + P Y ++
Sbjct: 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFT 61
Query: 339 DRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGG--GRE--DILKRMVLFCKAAIEI 394
D + + + +D + LD+P + Y G G++ D KR AA I
Sbjct: 62 DLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARI 121
Query: 395 PWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRG 454
GV G A+DW A PVY + Y + + SLL IHNIA QG+
Sbjct: 122 -----GAGVLPGWRPDXVHAHDWQAAXTPVYXR--YAETPEIP---SLLTIHNIAFQGQF 171
Query: 455 PVSDFVYTDLPGHYLDLFKLYDPVGGEHFN---IFAAGLKTADRVVTVSRGYSWELKTAE 511
+ F LP H + G E++N GL+TA + TVS Y+ E+ TAE
Sbjct: 172 GANIFSKLALPAH------AFGXEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAE 225
Query: 512 GGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAAL 571
G GL +I L GIVNGID W+P D HL D Y+ L + K A+
Sbjct: 226 FGXGLEGVIGSRAHVLHGIVNGIDADVWNPATD-HLIHDNYSAANLKN----RALNKKAV 280
Query: 572 QREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAI 605
F + D P+ I RL QKG+DL AEA+
Sbjct: 281 AEHFRID-DDGSPLFCVISRLTWQKGIDLXAEAV 313
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 142/341 (41%), Gaps = 82/341 (24%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+L+ E P K GGL + A+ +ALA GH V+V P +G + + ++ G + R
Sbjct: 4 MKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRF-QGEEIG-KIRVF 60
Query: 338 VDRQDIEVAYFQ---AYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAI-- 392
+ ++V+Y + I + LDS ++YG G + ++++ V F +A++
Sbjct: 61 GEEVQVKVSYEERGNLRIYRIGGGLLDS-------EDVYGPGWDGLIRKAVTFGRASVLL 113
Query: 393 --EIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAH 450
++ P V + +DWHT +K Y++ ++ IH +
Sbjct: 114 LNDLLREEPLPDVVH--------FHDWHTVFAGALIKKYFK-------IPAVFTIHRLNK 158
Query: 451 QGRGPVSDFVYTDLPGHY-----LDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSW 505
+ LP Y L Y + EH G AD V TVSRGY
Sbjct: 159 -----------SKLPAFYFHEAGLSELAPYPDIDPEH-----TGGYIADIVTTVSRGYLI 202
Query: 506 ELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKP 565
+ WG + K++ + NGID W+ Y L +
Sbjct: 203 D------EWGF---FRNFEGKITYVFNGIDCSFWNESY----------------LTGSRD 237
Query: 566 QCKAALQREFGLPVRDDVPVIGFIGRLDH-QKGVDLIAEAI 605
+ K +L +FG+ D+ FIGR D QKGVD++ +AI
Sbjct: 238 ERKKSLLSKFGM---DEGVTFMFIGRFDRGQKGVDVLLKAI 275
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 142/341 (41%), Gaps = 82/341 (24%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+L+ E P K GGL + A+ +ALA GH V+V P +G + + ++ G + R
Sbjct: 3 MKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRF-QGEEIG-KIRVF 59
Query: 338 VDRQDIEVAYFQ---AYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAI-- 392
+ ++V+Y + I + LDS ++YG G + ++++ V F +A++
Sbjct: 60 GEEVQVKVSYEERGNLRIYRIGGGLLDS-------EDVYGPGWDGLIRKAVTFGRASVLL 112
Query: 393 --EIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAH 450
++ P V + +DWHT +K Y++ ++ IH +
Sbjct: 113 LNDLLREEPLPDVVH--------FHDWHTVFAGALIKKYFK-------IPAVFTIHRLNK 157
Query: 451 QGRGPVSDFVYTDLPGHY-----LDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSW 505
+ LP Y L Y + EH G AD V TVSRGY
Sbjct: 158 -----------SKLPAFYFHEAGLSELAPYPDIDPEH-----TGGYIADIVTTVSRGYLI 201
Query: 506 ELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKP 565
+ WG + K++ + NGID W+ Y L +
Sbjct: 202 D------EWGF---FRNFEGKITYVFNGIDCSFWNESY----------------LTGSRD 236
Query: 566 QCKAALQREFGLPVRDDVPVIGFIGRLDH-QKGVDLIAEAI 605
+ K +L +FG+ D+ FIGR D QKGVD++ +AI
Sbjct: 237 ERKKSLLSKFGM---DEGVTFMFIGRFDRGQKGVDVLLKAI 274
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 142/341 (41%), Gaps = 82/341 (24%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
M V+L+ E P K GGL + A+ +ALA GH V+V P +G + + ++ G + R
Sbjct: 3 MKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRF-QGEEIG-KIRVF 59
Query: 338 VDRQDIEVAYFQ---AYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAI-- 392
+ ++V+Y + I + LDS ++YG G + ++++ V F +A++
Sbjct: 60 GEEVQVKVSYEERGNLRIYRIGGGLLDS-------EDVYGPGWDGLIRKAVTFGRASVLL 112
Query: 393 --EIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAH 450
++ P V + +DWHT +K Y++ ++ IH +
Sbjct: 113 LNDLLREEPLPDVVH--------FHDWHTVFAGALIKKYFK-------IPAVFTIHRLNK 157
Query: 451 QGRGPVSDFVYTDLPGHY-----LDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSW 505
+ LP Y L Y + EH G AD V TVSRGY
Sbjct: 158 -----------SKLPAFYFHEAGLSELAPYPDIDPEH-----TGGYIADIVTTVSRGYLI 201
Query: 506 ELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKP 565
+ WG + K++ + NGID W+ Y L +
Sbjct: 202 D------EWGF---FRNFEGKITYVFNGIDCSFWNESY----------------LTGSRD 236
Query: 566 QCKAALQREFGLPVRDDVPVIGFIGRLDH-QKGVDLIAEAI 605
+ K +L +FG+ D+ FIGR D QKGVD++ +AI
Sbjct: 237 ERKKSLLSKFGM---DEGVTFMFIGRFDRGQKGVDVLLKAI 274
>pdb|3D1L|A Chain A, Crystal Structure Of Putative Nadp Oxidoreductase Bf3122
From Bacteroides Fragilis
pdb|3D1L|B Chain B, Crystal Structure Of Putative Nadp Oxidoreductase Bf3122
From Bacteroides Fragilis
Length = 266
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 16/116 (13%)
Query: 295 GLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDG 354
G G++A L KAL R+G R++ V A + Y D ++ Y + YI
Sbjct: 17 GAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVN-PYAKLYI-- 73
Query: 355 VDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIP---W--YVPCGGVCY 405
V L F L I G RE+ L A IP W +VP GV Y
Sbjct: 74 ---VSLKDSAFAELLQGIVEGKREE-----ALXVHTAGSIPXNVWEGHVPHYGVFY 121
>pdb|4GI5|A Chain A, Crystal Structure Of A Putative Quinone Reductase From
Klebsiella Pneumoniae (Target Psi-013613)
pdb|4GI5|B Chain B, Crystal Structure Of A Putative Quinone Reductase From
Klebsiella Pneumoniae (Target Psi-013613)
Length = 280
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 47 LNNSVSGFSFRS-NKSGHLLKVKHVKAT--GAGFVEDESGNEPEDSLQATIEKSKKVLAM 103
LN ++ F+ R ++GH ++V + A AG+ D+SG P SK+ A
Sbjct: 37 LNGALKNFAIRHLQQAGHEVQVSDLYAXRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQ 96
Query: 104 QKQLLQQISERRKLV 118
Q ++E+ KL+
Sbjct: 97 GTQSADIVAEQEKLL 111
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 565 PQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQ--DVQLSHVG 619
P+ K+A +++ G D PVI RL +KG D + +A+P ++ D QL VG
Sbjct: 182 PEDKSATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVG 236
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 565 PQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQ--DVQLSHVG 619
P+ K+A +++ G D PVI RL +KG D + +A+P ++ D QL VG
Sbjct: 182 PEDKSATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVG 236
>pdb|3H09|A Chain A, The Structure Of Haemophilus Influenzae Iga1 Protease
pdb|3H09|B Chain B, The Structure Of Haemophilus Influenzae Iga1 Protease
Length = 989
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 197 NRLSPE--KESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQ 254
N PE K +D D++ L G++TQ W+ P+ +T+VIS+ E + D Q
Sbjct: 298 NIYKPEFAKTVLDKDTAGSLTGSNTQYNWN---PT--GKTSVISNGSESLNVDLFDSSQD 352
Query: 255 IDSEPIEPKTEEAKPPPLAGANVM 278
DS+ K K L G+ +
Sbjct: 353 TDSK----KNNHGKSVTLRGSGTL 372
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,064,243
Number of Sequences: 62578
Number of extensions: 855721
Number of successful extensions: 1930
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1880
Number of HSP's gapped (non-prelim): 26
length of query: 632
length of database: 14,973,337
effective HSP length: 105
effective length of query: 527
effective length of database: 8,402,647
effective search space: 4428194969
effective search space used: 4428194969
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)