Query 006770
Match_columns 632
No_of_seqs 178 out of 1536
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 14:14:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02939 transferase, transfer 100.0 1.1E-50 2.3E-55 468.5 32.4 337 275-629 479-826 (977)
2 PRK14098 glycogen synthase; Pr 100.0 2.5E-48 5.5E-53 432.8 29.6 340 274-631 2-355 (489)
3 PRK14099 glycogen synthase; Pr 100.0 3.1E-48 6.7E-53 431.7 28.8 335 275-631 1-343 (485)
4 TIGR02095 glgA glycogen/starch 100.0 1.3E-46 2.9E-51 415.9 30.2 333 278-631 1-339 (473)
5 PRK00654 glgA glycogen synthas 100.0 1.9E-44 4.1E-49 398.9 28.1 325 278-630 1-329 (466)
6 PLN02316 synthase/transferase 100.0 1.4E-42 2.9E-47 407.2 34.7 299 275-629 585-887 (1036)
7 COG0297 GlgA Glycogen synthase 100.0 7.8E-43 1.7E-47 384.8 26.5 334 278-631 1-342 (487)
8 cd03791 GT1_Glycogen_synthase_ 100.0 4.2E-42 9.2E-47 378.5 29.6 337 279-631 1-344 (476)
9 PF08323 Glyco_transf_5: Starc 100.0 8.6E-36 1.9E-40 304.6 12.1 232 279-521 1-244 (245)
10 TIGR02094 more_P_ylases alpha- 100.0 1.5E-29 3.1E-34 287.3 23.5 338 280-631 1-449 (601)
11 cd04299 GT1_Glycogen_Phosphory 99.9 5.5E-25 1.2E-29 254.5 24.3 333 279-625 87-526 (778)
12 PRK10307 putative glycosyl tra 99.9 2.4E-22 5.3E-27 217.7 28.3 273 278-631 1-280 (412)
13 TIGR03449 mycothiol_MshA UDP-N 99.9 5.6E-21 1.2E-25 205.7 22.5 250 280-620 1-260 (405)
14 TIGR02149 glgA_Coryne glycogen 99.9 1.4E-20 3.1E-25 200.4 25.0 239 278-622 1-239 (388)
15 TIGR02472 sucr_P_syn_N sucrose 99.9 2.7E-20 6E-25 204.7 27.6 262 292-622 24-290 (439)
16 cd03796 GT1_PIG-A_like This fa 99.9 2.8E-20 6.1E-25 201.2 22.2 240 279-630 1-244 (398)
17 PLN02871 UDP-sulfoquinovose:DA 99.9 1.5E-19 3.2E-24 200.2 27.0 244 275-622 56-300 (465)
18 cd04962 GT1_like_5 This family 99.8 2.7E-19 5.8E-24 188.6 24.5 236 278-622 1-237 (371)
19 TIGR02470 sucr_synth sucrose s 99.8 1.2E-18 2.6E-23 201.8 28.3 300 277-622 255-591 (784)
20 TIGR02468 sucrsPsyn_pln sucros 99.8 1.6E-18 3.5E-23 204.6 28.1 310 276-622 168-521 (1050)
21 PLN02846 digalactosyldiacylgly 99.8 3.4E-18 7.5E-23 189.1 20.8 268 276-631 3-280 (462)
22 KOG1111 N-acetylglucosaminyltr 99.8 4.4E-19 9.6E-24 185.5 12.7 243 278-631 1-247 (426)
23 cd03800 GT1_Sucrose_synthase T 99.8 1.5E-17 3.3E-22 176.4 23.4 255 279-623 1-262 (398)
24 cd03819 GT1_WavL_like This fam 99.8 3.3E-17 7.2E-22 171.1 23.3 218 292-623 8-227 (355)
25 cd04955 GT1_like_6 This family 99.8 8.1E-17 1.8E-21 168.4 25.6 239 279-630 1-241 (363)
26 cd03812 GT1_CapH_like This fam 99.8 4.5E-17 9.8E-22 170.3 23.0 238 279-630 1-243 (358)
27 cd04951 GT1_WbdM_like This fam 99.8 7.4E-17 1.6E-21 168.2 24.1 235 279-630 1-239 (360)
28 cd03805 GT1_ALG2_like This fam 99.8 5.9E-17 1.3E-21 172.8 22.8 248 278-623 1-256 (392)
29 cd03802 GT1_AviGT4_like This f 99.8 8.4E-17 1.8E-21 166.7 22.7 205 278-622 1-207 (335)
30 PRK15484 lipopolysaccharide 1, 99.8 3.7E-17 8E-22 176.7 20.4 228 278-622 3-234 (380)
31 TIGR03088 stp2 sugar transfera 99.7 9.4E-17 2E-21 171.0 21.2 240 278-631 2-250 (374)
32 cd03818 GT1_ExpC_like This fam 99.7 2.2E-16 4.8E-21 170.6 23.4 248 279-621 1-252 (396)
33 cd03816 GT1_ALG1_like This fam 99.7 2E-16 4.4E-21 173.0 22.8 258 278-631 4-290 (415)
34 PLN00142 sucrose synthase 99.7 1.3E-16 2.8E-21 185.3 22.2 297 277-621 279-613 (815)
35 PRK15427 colanic acid biosynth 99.7 2.6E-16 5.7E-21 171.9 22.7 155 406-631 116-274 (406)
36 PRK10125 putative glycosyl tra 99.7 2.9E-16 6.2E-21 171.8 22.3 264 278-623 1-282 (405)
37 cd03795 GT1_like_4 This family 99.7 6E-16 1.3E-20 161.2 23.3 235 279-629 1-237 (357)
38 cd03793 GT1_Glycogen_synthase_ 99.7 5.6E-17 1.2E-21 181.6 15.7 285 281-610 5-326 (590)
39 cd03807 GT1_WbnK_like This fam 99.7 5.8E-16 1.3E-20 158.8 20.7 233 279-623 1-235 (365)
40 cd03821 GT1_Bme6_like This fam 99.7 1E-15 2.2E-20 157.6 22.2 246 279-627 1-249 (375)
41 cd03794 GT1_wbuB_like This fam 99.7 1.9E-15 4.2E-20 155.9 24.2 259 279-623 1-261 (394)
42 cd03817 GT1_UGDG_like This fam 99.7 1.4E-15 3.1E-20 156.8 22.7 239 279-622 1-243 (374)
43 cd03792 GT1_Trehalose_phosphor 99.7 5.5E-16 1.2E-20 165.8 18.9 229 279-623 1-232 (372)
44 cd03823 GT1_ExpE7_like This fa 99.7 4.5E-15 9.8E-20 152.9 22.3 233 279-625 1-233 (359)
45 PRK09922 UDP-D-galactose:(gluc 99.7 2.4E-15 5.3E-20 160.5 19.7 225 278-631 1-231 (359)
46 PRK15179 Vi polysaccharide bio 99.7 5.5E-15 1.2E-19 171.0 22.5 269 269-631 275-569 (694)
47 cd03799 GT1_amsK_like This is 99.7 1.8E-14 3.9E-19 150.0 23.7 219 279-623 1-221 (355)
48 cd03814 GT1_like_2 This family 99.7 8.5E-15 1.9E-19 151.4 20.8 236 279-623 1-238 (364)
49 cd03801 GT1_YqgM_like This fam 99.6 4.6E-14 1E-18 143.5 25.0 238 279-622 1-240 (374)
50 cd05844 GT1_like_7 Glycosyltra 99.6 8.4E-15 1.8E-19 154.2 20.0 155 407-630 81-239 (367)
51 cd03822 GT1_ecORF704_like This 99.6 3.9E-14 8.5E-19 146.9 23.5 225 279-623 1-227 (366)
52 cd03809 GT1_mtfB_like This fam 99.6 1.9E-14 4.1E-19 149.2 19.7 238 279-626 1-240 (365)
53 cd03825 GT1_wcfI_like This fam 99.6 3.1E-14 6.8E-19 148.7 20.5 224 278-625 1-238 (365)
54 PRK00726 murG undecaprenyldiph 99.6 3.8E-14 8.2E-19 150.8 21.0 223 277-623 1-224 (357)
55 cd03811 GT1_WabH_like This fam 99.6 7.4E-14 1.6E-18 141.9 21.3 227 279-622 1-230 (353)
56 cd03820 GT1_amsD_like This fam 99.6 1.2E-13 2.7E-18 140.3 22.1 218 279-623 1-220 (348)
57 cd03798 GT1_wlbH_like This fam 99.6 4.1E-13 8.9E-18 137.4 25.0 241 280-623 1-244 (377)
58 PLN02275 transferase, transfer 99.6 1.1E-13 2.3E-18 149.3 21.4 242 293-631 14-282 (371)
59 cd03808 GT1_cap1E_like This fa 99.6 6.2E-13 1.3E-17 135.8 23.7 228 279-623 1-230 (359)
60 cd03806 GT1_ALG11_like This fa 99.5 6E-13 1.3E-17 146.1 21.7 252 287-622 6-283 (419)
61 PF13579 Glyco_trans_4_4: Glyc 99.5 8.2E-14 1.8E-18 128.2 12.1 160 294-533 1-160 (160)
62 PF13439 Glyco_transf_4: Glyco 99.5 1.6E-13 3.5E-18 128.3 13.6 177 280-540 1-177 (177)
63 PRK15490 Vi polysaccharide bio 99.5 3.5E-13 7.7E-18 151.2 17.9 163 406-631 278-450 (578)
64 cd03785 GT1_MurG MurG is an N- 99.5 1.5E-12 3.2E-17 137.3 21.5 228 279-630 1-231 (350)
65 TIGR01133 murG undecaprenyldip 99.5 2.7E-12 5.9E-17 135.2 21.2 226 278-630 1-229 (348)
66 TIGR03087 stp1 sugar transfera 99.5 3.5E-13 7.5E-18 145.9 12.5 162 407-623 103-270 (397)
67 cd03813 GT1_like_3 This family 99.4 5.6E-13 1.2E-17 148.5 13.0 160 407-622 172-334 (475)
68 PLN02501 digalactosyldiacylgly 99.4 2.9E-12 6.3E-17 145.8 16.1 96 493-631 499-598 (794)
69 PLN02949 transferase, transfer 99.3 3.5E-10 7.6E-15 126.2 22.6 95 485-622 213-313 (463)
70 cd03804 GT1_wbaZ_like This fam 99.3 7.3E-11 1.6E-15 124.7 16.0 87 485-623 146-232 (351)
71 cd03788 GT1_TPS Trehalose-6-Ph 99.2 1.5E-10 3.2E-15 129.1 14.2 165 408-621 131-308 (460)
72 PRK13609 diacylglycerol glucos 99.1 1.6E-09 3.4E-14 116.7 15.8 230 276-620 3-238 (380)
73 PF05693 Glycogen_syn: Glycoge 99.1 4.2E-10 9.1E-15 126.4 10.4 285 283-609 2-320 (633)
74 TIGR02400 trehalose_OtsA alpha 99.1 1.5E-09 3.4E-14 120.9 14.8 163 408-619 127-301 (456)
75 PF09314 DUF1972: Domain of un 99.1 9.6E-09 2.1E-13 101.3 18.6 183 278-535 2-185 (185)
76 cd04946 GT1_AmsK_like This fam 99.0 9.1E-09 2E-13 112.6 17.2 101 485-629 176-282 (407)
77 TIGR02918 accessory Sec system 98.9 7.4E-09 1.6E-13 116.7 14.3 100 490-631 268-371 (500)
78 PRK05749 3-deoxy-D-manno-octul 98.9 4.4E-08 9.5E-13 107.3 19.4 157 407-631 123-284 (425)
79 PHA01630 putative group 1 glyc 98.9 1.1E-08 2.4E-13 109.5 13.2 96 485-623 86-184 (331)
80 PLN02605 monogalactosyldiacylg 98.8 4.3E-08 9.3E-13 106.3 15.3 97 491-622 149-252 (382)
81 cd04949 GT1_gtfA_like This fam 98.8 9.8E-08 2.1E-12 101.6 14.5 91 489-623 154-246 (372)
82 PRK14501 putative bifunctional 98.7 7.3E-08 1.6E-12 113.3 13.8 164 408-620 133-308 (726)
83 PLN03063 alpha,alpha-trehalose 98.7 1.2E-07 2.5E-12 112.5 15.3 154 408-610 147-306 (797)
84 cd03786 GT1_UDP-GlcNAc_2-Epime 98.7 1.6E-07 3.5E-12 99.7 13.9 159 407-631 87-252 (363)
85 PHA01633 putative glycosyl tra 98.7 2E-07 4.2E-12 100.2 14.4 99 488-621 88-192 (335)
86 PF13477 Glyco_trans_4_2: Glyc 98.7 2.5E-07 5.5E-12 85.1 12.9 138 279-500 1-139 (139)
87 TIGR02398 gluc_glyc_Psyn gluco 98.7 2.1E-07 4.5E-12 104.5 14.5 166 408-622 132-330 (487)
88 cd04950 GT1_like_1 Glycosyltra 98.6 5.5E-06 1.2E-10 89.5 22.2 98 484-622 145-242 (373)
89 PRK13608 diacylglycerol glucos 98.6 1.7E-06 3.6E-11 94.5 18.1 95 491-622 146-242 (391)
90 PRK00025 lpxB lipid-A-disaccha 98.6 1.1E-06 2.3E-11 94.4 15.1 140 407-620 84-228 (380)
91 cd01635 Glycosyltransferase_GT 98.5 3E-06 6.6E-11 81.7 15.3 36 588-623 109-146 (229)
92 TIGR00236 wecB UDP-N-acetylglu 98.4 3.6E-06 7.7E-11 90.4 13.0 151 407-624 85-242 (365)
93 TIGR00215 lpxB lipid-A-disacch 98.3 1.2E-05 2.7E-10 87.8 15.7 141 406-619 87-232 (385)
94 PRK09814 beta-1,6-galactofuran 98.0 8.3E-05 1.8E-09 79.4 13.8 135 408-623 63-201 (333)
95 PRK12446 undecaprenyldiphospho 98.0 0.0017 3.7E-08 70.3 23.2 40 278-322 1-40 (352)
96 cd04300 GT1_Glycogen_Phosphory 97.8 0.00014 3E-09 85.5 13.3 212 408-624 300-581 (797)
97 PLN03064 alpha,alpha-trehalose 97.8 0.00017 3.6E-09 86.6 13.8 154 408-610 231-390 (934)
98 COG0058 GlgP Glucan phosphoryl 97.8 7.6E-05 1.6E-09 86.8 9.8 326 289-623 111-534 (750)
99 TIGR02093 P_ylase glycogen/sta 97.6 0.00024 5.3E-09 83.3 10.8 212 408-624 297-578 (794)
100 PRK14986 glycogen phosphorylas 97.6 0.00083 1.8E-08 79.2 14.2 212 408-624 313-594 (815)
101 PRK14985 maltodextrin phosphor 97.3 0.0016 3.5E-08 76.6 11.5 212 408-624 302-580 (798)
102 KOG2941 Beta-1,4-mannosyltrans 97.2 0.022 4.8E-07 61.1 17.7 265 296-632 25-315 (444)
103 PF12000 Glyco_trans_4_3: Gkyc 97.1 0.0052 1.1E-07 60.3 11.1 40 488-539 131-170 (171)
104 PF00534 Glycos_transf_1: Glyc 97.1 0.0014 2.9E-08 62.1 6.8 52 569-622 3-57 (172)
105 PF00862 Sucrose_synth: Sucros 96.9 0.0063 1.4E-07 68.1 10.9 184 278-509 273-482 (550)
106 PRK10117 trehalose-6-phosphate 96.8 0.02 4.3E-07 64.5 14.5 163 408-620 123-298 (474)
107 KOG3742 Glycogen synthase [Car 96.8 0.00052 1.1E-08 75.0 1.6 162 409-609 175-351 (692)
108 COG0380 OtsA Trehalose-6-phosp 96.6 0.053 1.1E-06 61.2 15.9 165 408-622 147-327 (486)
109 PLN02205 alpha,alpha-trehalose 96.6 0.028 6E-07 67.8 14.1 165 409-620 202-382 (854)
110 PF00343 Phosphorylase: Carboh 96.3 0.0098 2.1E-07 69.5 8.0 212 409-625 215-496 (713)
111 COG0438 RfaG Glycosyltransfera 96.3 0.043 9.2E-07 54.7 11.7 90 492-623 150-241 (381)
112 PF04007 DUF354: Protein of un 96.3 0.15 3.2E-06 55.3 16.5 39 278-323 1-39 (335)
113 PF00982 Glyco_transf_20: Glyc 96.3 0.027 5.8E-07 63.7 11.2 165 408-620 141-319 (474)
114 PF11997 DUF3492: Domain of un 96.1 0.039 8.4E-07 57.9 10.6 42 278-320 1-42 (268)
115 KOG1387 Glycosyltransferase [C 96.1 0.21 4.5E-06 53.9 15.9 156 406-622 148-315 (465)
116 COG0707 MurG UDP-N-acetylgluco 96.0 0.74 1.6E-05 50.4 20.0 120 278-448 1-124 (357)
117 KOG0853 Glycosyltransferase [C 95.7 0.099 2.1E-06 59.0 11.9 104 490-620 207-317 (495)
118 PF13692 Glyco_trans_1_4: Glyc 94.6 0.023 5E-07 51.5 2.7 42 583-624 2-46 (135)
119 COG1817 Uncharacterized protei 90.8 9 0.00019 41.3 15.4 39 278-323 1-39 (346)
120 PF08288 PIGA: PIGA (GPI ancho 89.0 2.3 4.9E-05 37.5 7.8 38 406-448 48-85 (90)
121 PF13528 Glyco_trans_1_3: Glyc 85.8 9.4 0.0002 39.8 12.0 36 278-320 1-36 (318)
122 TIGR03568 NeuC_NnaA UDP-N-acet 82.7 14 0.00031 40.3 12.1 85 407-536 92-179 (365)
123 TIGR00661 MJ1255 conserved hyp 82.7 6.3 0.00014 41.8 9.2 28 292-320 8-36 (321)
124 PF01975 SurE: Survival protei 80.8 1.7 3.8E-05 43.6 3.8 39 278-323 1-39 (196)
125 cd03784 GT1_Gtf_like This fami 77.1 3.7 8.1E-05 44.4 5.3 37 278-320 1-37 (401)
126 PF02951 GSH-S_N: Prokaryotic 74.5 4.1 8.8E-05 37.8 4.1 40 278-320 1-40 (119)
127 TIGR03713 acc_sec_asp1 accesso 73.4 9.6 0.00021 43.8 7.6 46 583-629 319-369 (519)
128 PF02350 Epimerase_2: UDP-N-ac 72.7 31 0.00067 37.5 11.0 84 407-532 66-152 (346)
129 PF03033 Glyco_transf_28: Glyc 69.1 7.2 0.00016 35.5 4.4 28 293-320 8-35 (139)
130 COG0763 LpxB Lipid A disacchar 64.9 2.1E+02 0.0046 31.8 15.2 52 568-620 175-230 (381)
131 PRK00207 sulfur transfer compl 62.8 16 0.00034 34.2 5.4 39 278-319 1-40 (128)
132 PHA03392 egt ecdysteroid UDP-g 60.2 13 0.00028 42.6 5.2 39 278-321 21-59 (507)
133 TIGR01915 npdG NADPH-dependent 60.1 12 0.00025 37.7 4.4 32 278-319 1-32 (219)
134 PF12038 DUF3524: Domain of un 57.2 99 0.0021 30.5 9.9 79 407-509 58-136 (168)
135 PF06925 MGDG_synth: Monogalac 56.2 1E+02 0.0022 29.6 10.0 19 491-509 136-154 (169)
136 PRK06756 flavodoxin; Provision 55.0 24 0.00052 33.1 5.3 38 277-319 1-38 (148)
137 COG2910 Putative NADH-flavin r 54.1 18 0.00038 36.5 4.2 35 278-322 1-35 (211)
138 PRK10037 cell division protein 53.9 17 0.00036 37.3 4.4 35 278-318 1-37 (250)
139 PLN02695 GDP-D-mannose-3',5'-e 52.4 24 0.00053 38.3 5.5 42 267-319 12-53 (370)
140 COG4671 Predicted glycosyl tra 51.7 1.2E+02 0.0026 33.6 10.3 41 276-320 8-50 (400)
141 PLN00016 RNA-binding protein; 51.4 15 0.00033 39.9 3.7 39 276-320 51-89 (378)
142 PF03358 FMN_red: NADPH-depend 51.3 31 0.00067 32.1 5.4 40 278-320 1-40 (152)
143 KOG2130 Phosphatidylserine-spe 49.6 14 0.00031 39.6 3.0 37 98-144 321-357 (407)
144 TIGR01007 eps_fam capsular exo 47.8 36 0.00078 33.5 5.5 38 278-319 17-54 (204)
145 COG1763 MobB Molybdopterin-gua 46.9 33 0.00073 33.5 4.9 39 277-320 1-39 (161)
146 PF03446 NAD_binding_2: NAD bi 46.8 28 0.0006 33.3 4.4 31 277-318 1-31 (163)
147 PRK09271 flavodoxin; Provision 46.1 38 0.00083 32.4 5.2 36 278-318 1-36 (160)
148 PRK01021 lpxB lipid-A-disaccha 45.7 5E+02 0.011 30.8 14.9 49 569-620 401-454 (608)
149 CHL00194 ycf39 Ycf39; Provisio 45.3 26 0.00057 36.9 4.3 33 278-320 1-33 (317)
150 COG0569 TrkA K+ transport syst 45.0 25 0.00055 35.8 4.0 26 295-320 7-32 (225)
151 PF00201 UDPGT: UDP-glucoronos 44.9 8.6 0.00019 43.2 0.6 27 295-321 11-37 (500)
152 TIGR00087 surE 5'/3'-nucleotid 44.5 30 0.00065 36.0 4.4 37 278-322 1-37 (244)
153 PRK06249 2-dehydropantoate 2-r 43.6 30 0.00066 36.7 4.5 35 275-320 3-37 (313)
154 COG0716 FldA Flavodoxins [Ener 43.5 36 0.00078 32.2 4.5 36 277-317 1-36 (151)
155 COG1819 Glycosyl transferases, 43.0 26 0.00057 38.9 4.1 38 277-320 1-38 (406)
156 PLN00198 anthocyanidin reducta 41.9 48 0.001 35.1 5.7 39 271-319 3-41 (338)
157 COG4635 HemG Flavodoxin [Energ 41.5 43 0.00094 32.9 4.7 36 278-318 1-36 (175)
158 TIGR01380 glut_syn glutathione 41.0 26 0.00057 37.4 3.6 41 278-321 1-41 (312)
159 PRK08305 spoVFB dipicolinate s 40.5 54 0.0012 33.1 5.4 36 277-320 5-42 (196)
160 PRK06703 flavodoxin; Provision 40.0 53 0.0011 30.8 5.1 38 277-319 1-38 (151)
161 PF02374 ArsA_ATPase: Anion-tr 39.5 33 0.00072 36.7 4.0 37 278-321 1-39 (305)
162 PRK13982 bifunctional SbtC-lik 39.1 95 0.0021 35.5 7.7 36 277-320 70-106 (475)
163 PRK13933 stationary phase surv 39.0 41 0.00088 35.3 4.4 38 278-323 1-38 (253)
164 PRK09739 hypothetical protein; 39.0 73 0.0016 31.5 6.1 41 276-319 2-42 (199)
165 PLN02166 dTDP-glucose 4,6-dehy 39.0 50 0.0011 37.1 5.5 35 275-319 118-152 (436)
166 PRK13234 nifH nitrogenase redu 38.2 48 0.001 35.1 4.9 36 276-318 2-39 (295)
167 PRK13935 stationary phase surv 38.0 44 0.00095 35.0 4.5 38 278-323 1-38 (253)
168 PRK13932 stationary phase surv 38.0 45 0.00098 35.0 4.6 39 277-323 5-43 (257)
169 PLN02778 3,5-epimerase/4-reduc 37.9 49 0.0011 34.8 5.0 33 276-318 8-40 (298)
170 TIGR00715 precor6x_red precorr 37.1 47 0.001 34.7 4.6 32 278-320 1-32 (256)
171 KOG1429 dTDP-glucose 4-6-dehyd 37.0 61 0.0013 34.9 5.3 32 278-319 28-59 (350)
172 COG0496 SurE Predicted acid ph 36.9 44 0.00096 35.0 4.3 37 278-322 1-37 (252)
173 TIGR01754 flav_RNR ribonucleot 36.8 59 0.0013 30.2 4.8 35 278-317 1-35 (140)
174 PF06564 YhjQ: YhjQ protein; 36.3 60 0.0013 33.8 5.2 36 278-319 1-38 (243)
175 PF02441 Flavoprotein: Flavopr 36.1 45 0.00097 30.7 3.8 36 278-320 1-36 (129)
176 PRK10427 putative PTS system f 36.0 77 0.0017 29.1 5.3 39 277-320 2-42 (114)
177 PRK06522 2-dehydropantoate 2-r 35.8 45 0.00098 34.6 4.3 32 278-320 1-32 (304)
178 PRK10675 UDP-galactose-4-epime 35.8 43 0.00092 35.2 4.1 31 278-318 1-31 (338)
179 PRK08309 short chain dehydroge 35.3 60 0.0013 31.9 4.8 25 294-319 7-31 (177)
180 PRK00094 gpsA NAD(P)H-dependen 34.9 48 0.001 34.9 4.4 33 277-320 1-33 (325)
181 PRK13934 stationary phase surv 34.4 53 0.0011 34.7 4.4 37 278-322 1-37 (266)
182 PRK05246 glutathione synthetas 34.1 38 0.00083 36.1 3.4 42 277-321 1-42 (316)
183 PRK00346 surE 5'(3')-nucleotid 33.6 55 0.0012 34.2 4.4 38 278-323 1-38 (250)
184 PRK13235 nifH nitrogenase redu 33.0 54 0.0012 34.0 4.3 35 278-319 1-37 (274)
185 PRK14619 NAD(P)H-dependent gly 32.8 67 0.0015 34.0 5.0 33 277-320 4-36 (308)
186 TIGR01968 minD_bact septum sit 32.7 61 0.0013 32.7 4.5 35 279-319 2-38 (261)
187 TIGR03018 pepcterm_TyrKin exop 32.7 1.1E+02 0.0023 30.4 6.2 41 276-320 33-74 (207)
188 TIGR03371 cellulose_yhjQ cellu 32.7 74 0.0016 31.9 5.1 37 278-320 1-39 (246)
189 PRK12921 2-dehydropantoate 2-r 32.6 48 0.001 34.5 3.9 31 278-319 1-31 (305)
190 PRK14618 NAD(P)H-dependent gly 32.1 57 0.0012 34.8 4.4 33 277-320 4-36 (328)
191 PLN02206 UDP-glucuronate decar 31.8 67 0.0015 36.1 5.1 33 276-318 118-150 (442)
192 PLN00141 Tic62-NAD(P)-related 31.6 85 0.0018 31.7 5.4 32 278-319 18-49 (251)
193 PRK10818 cell division inhibit 31.5 91 0.002 32.0 5.6 39 277-321 1-41 (270)
194 COG2085 Predicted dinucleotide 31.4 58 0.0013 33.3 4.0 29 294-322 7-35 (211)
195 PLN02572 UDP-sulfoquinovose sy 31.0 84 0.0018 35.3 5.7 25 294-318 54-78 (442)
196 PF10727 Rossmann-like: Rossma 30.9 26 0.00055 32.8 1.3 35 275-320 8-42 (127)
197 PRK09730 putative NAD(P)-bindi 30.9 60 0.0013 32.1 4.1 32 278-318 1-32 (247)
198 TIGR03029 EpsG chain length de 30.6 1.1E+02 0.0023 31.7 6.0 37 278-318 103-139 (274)
199 PRK07454 short chain dehydroge 30.6 63 0.0014 32.0 4.2 34 277-319 5-38 (241)
200 PF02684 LpxB: Lipid-A-disacch 30.3 7.9E+02 0.017 27.2 13.3 50 570-622 174-228 (373)
201 COG2894 MinD Septum formation 30.2 68 0.0015 33.4 4.2 38 279-322 3-42 (272)
202 PF13614 AAA_31: AAA domain; P 30.0 1.1E+02 0.0024 28.3 5.5 29 292-320 10-38 (157)
203 PRK05723 flavodoxin; Provision 29.9 82 0.0018 30.2 4.6 36 278-318 1-36 (151)
204 PRK06849 hypothetical protein; 29.8 73 0.0016 34.8 4.8 35 276-320 3-37 (389)
205 PRK08229 2-dehydropantoate 2-r 29.4 59 0.0013 34.6 4.0 32 277-319 2-33 (341)
206 PRK11064 wecC UDP-N-acetyl-D-m 29.1 67 0.0015 35.8 4.4 33 276-319 2-34 (415)
207 PRK06924 short chain dehydroge 28.8 65 0.0014 32.1 3.9 26 294-319 8-33 (251)
208 cd02040 NifH NifH gene encodes 28.7 96 0.0021 31.6 5.3 35 278-319 1-37 (270)
209 COG0702 Predicted nucleoside-d 28.7 60 0.0013 32.6 3.7 28 294-321 7-34 (275)
210 CHL00072 chlL photochlorophyll 28.3 99 0.0021 32.7 5.3 35 278-320 1-37 (290)
211 PRK04155 chaperone protein Hch 28.0 2.1E+02 0.0045 30.6 7.6 50 269-320 43-99 (287)
212 PRK11199 tyrA bifunctional cho 27.8 64 0.0014 35.4 4.0 35 276-320 97-131 (374)
213 PRK05993 short chain dehydroge 27.8 78 0.0017 32.5 4.4 34 277-319 3-36 (277)
214 PRK08655 prephenate dehydrogen 27.7 68 0.0015 36.1 4.2 33 278-320 1-33 (437)
215 PLN02896 cinnamyl-alcohol dehy 27.5 87 0.0019 33.4 4.8 33 277-319 10-42 (353)
216 PRK14494 putative molybdopteri 27.4 1.2E+02 0.0025 31.4 5.4 38 278-320 1-38 (229)
217 PRK05708 2-dehydropantoate 2-r 27.3 80 0.0017 33.5 4.4 33 277-320 2-34 (305)
218 PRK05693 short chain dehydroge 27.2 70 0.0015 32.6 3.9 33 278-319 1-33 (274)
219 COG0003 ArsA Predicted ATPase 27.2 96 0.0021 33.7 5.1 37 277-320 1-39 (322)
220 COG0451 WcaG Nucleoside-diphos 27.0 84 0.0018 32.2 4.5 29 293-321 6-34 (314)
221 PLN02208 glycosyltransferase f 26.9 1.1E+02 0.0025 34.4 5.8 39 276-320 3-41 (442)
222 CHL00175 minD septum-site dete 26.8 1.3E+02 0.0028 31.1 5.9 36 278-319 15-52 (281)
223 PLN02686 cinnamoyl-CoA reducta 26.8 1E+02 0.0023 33.4 5.3 26 294-319 60-85 (367)
224 PRK11104 hemG protoporphyrinog 26.6 84 0.0018 30.7 4.2 35 278-318 1-35 (177)
225 PRK05568 flavodoxin; Provision 26.3 1.4E+02 0.003 27.4 5.4 37 278-319 2-38 (142)
226 COG2084 MmsB 3-hydroxyisobutyr 26.3 75 0.0016 33.9 4.0 32 278-320 1-32 (286)
227 TIGR03492 conserved hypothetic 26.3 9.1E+02 0.02 26.6 15.4 37 582-618 204-244 (396)
228 PLN02662 cinnamyl-alcohol dehy 26.3 1.2E+02 0.0025 31.6 5.4 27 294-320 11-37 (322)
229 PRK13849 putative crown gall t 26.2 1.2E+02 0.0026 31.0 5.4 37 278-320 1-39 (231)
230 PF02525 Flavodoxin_2: Flavodo 25.9 1.2E+02 0.0025 29.8 5.1 39 278-318 1-40 (199)
231 COG1553 DsrE Uncharacterized c 25.8 1.5E+02 0.0033 27.8 5.4 40 278-320 1-41 (126)
232 PF13460 NAD_binding_10: NADH( 25.6 62 0.0013 30.7 3.0 28 293-320 4-31 (183)
233 PRK07417 arogenate dehydrogena 25.5 88 0.0019 32.6 4.3 32 278-320 1-32 (279)
234 PRK12825 fabG 3-ketoacyl-(acyl 25.5 1.1E+02 0.0024 29.9 4.9 27 294-320 13-39 (249)
235 PRK09004 FMN-binding protein M 25.4 1.2E+02 0.0026 28.7 4.8 35 279-318 3-37 (146)
236 COG4088 Predicted nucleotide k 25.4 71 0.0015 33.0 3.4 40 278-322 1-40 (261)
237 TIGR00872 gnd_rel 6-phosphoglu 25.3 97 0.0021 32.8 4.6 31 278-319 1-31 (298)
238 PRK07023 short chain dehydroge 25.2 83 0.0018 31.3 3.9 33 277-319 1-33 (243)
239 PRK14620 NAD(P)H-dependent gly 25.1 86 0.0019 33.3 4.3 32 278-320 1-32 (326)
240 PF03721 UDPG_MGDP_dh_N: UDP-g 25.1 68 0.0015 31.7 3.2 31 278-319 1-31 (185)
241 PRK12745 3-ketoacyl-(acyl-carr 25.1 88 0.0019 31.2 4.1 26 294-319 9-34 (256)
242 PRK06719 precorrin-2 dehydroge 25.1 66 0.0014 31.0 3.0 25 297-321 22-46 (157)
243 COG1090 Predicted nucleoside-d 25.0 63 0.0014 34.5 3.0 31 292-322 3-33 (297)
244 TIGR03466 HpnA hopanoid-associ 24.8 80 0.0017 32.7 3.9 27 294-320 7-33 (328)
245 PRK02122 glucosamine-6-phospha 24.6 1.5E+02 0.0032 35.3 6.4 48 270-323 362-409 (652)
246 PRK07102 short chain dehydroge 24.4 90 0.002 31.0 4.0 27 294-320 8-34 (243)
247 PLN02427 UDP-apiose/xylose syn 24.4 1E+02 0.0022 33.4 4.7 34 276-319 13-47 (386)
248 TIGR01426 MGT glycosyltransfer 24.4 59 0.0013 35.2 2.9 21 300-320 12-32 (392)
249 PRK07308 flavodoxin; Validated 24.4 1.4E+02 0.003 27.8 5.1 27 292-318 11-37 (146)
250 PRK05569 flavodoxin; Provision 24.1 1.6E+02 0.0035 27.0 5.4 37 278-319 2-38 (141)
251 PRK13185 chlL protochlorophyll 24.1 1.5E+02 0.0032 30.5 5.6 35 278-319 2-38 (270)
252 PRK03767 NAD(P)H:quinone oxido 24.0 1.5E+02 0.0032 29.4 5.4 38 277-319 1-39 (200)
253 TIGR03453 partition_RepA plasm 23.8 1.4E+02 0.0031 32.8 5.7 39 276-320 102-142 (387)
254 cd02032 Bchl_like This family 23.7 1.3E+02 0.0029 30.8 5.3 35 278-320 1-37 (267)
255 PF04413 Glycos_transf_N: 3-De 23.6 3.5E+02 0.0076 26.7 8.0 38 485-532 142-179 (186)
256 PRK08177 short chain dehydroge 23.6 89 0.0019 30.8 3.8 25 293-320 10-34 (225)
257 PRK10538 malonic semialdehyde 23.3 1E+02 0.0023 30.8 4.3 32 278-319 1-32 (248)
258 PRK07313 phosphopantothenoylcy 23.1 1.5E+02 0.0032 29.4 5.1 35 278-320 2-37 (182)
259 PRK05653 fabG 3-ketoacyl-(acyl 23.0 1.3E+02 0.0028 29.5 4.8 27 294-320 12-38 (246)
260 PRK15181 Vi polysaccharide bio 23.0 1.1E+02 0.0024 32.7 4.6 27 293-319 21-47 (348)
261 PF00070 Pyr_redox: Pyridine n 22.9 84 0.0018 26.0 3.0 27 295-321 6-32 (80)
262 PRK13931 stationary phase surv 22.8 1.2E+02 0.0025 32.1 4.5 39 278-323 1-42 (261)
263 PRK08267 short chain dehydroge 22.7 1E+02 0.0022 31.0 4.1 26 294-319 8-33 (260)
264 PRK05920 aromatic acid decarbo 22.6 1.5E+02 0.0033 30.0 5.2 36 277-320 3-39 (204)
265 TIGR01281 DPOR_bchL light-inde 22.6 1.5E+02 0.0032 30.4 5.3 34 278-319 1-36 (268)
266 PF02635 DrsE: DsrE/DsrF-like 22.5 2E+02 0.0043 25.0 5.5 40 278-320 1-43 (122)
267 PLN02712 arogenate dehydrogena 22.5 2.4E+02 0.0053 33.6 7.7 35 275-320 50-84 (667)
268 PRK06101 short chain dehydroge 22.4 1E+02 0.0023 30.7 4.1 33 278-319 1-33 (240)
269 TIGR03012 sulf_tusD_dsrE sulfu 22.4 1.6E+02 0.0035 27.3 5.0 37 280-319 2-39 (127)
270 PRK09134 short chain dehydroge 22.3 1.6E+02 0.0035 29.6 5.4 24 293-319 18-41 (258)
271 COG0857 Pta BioD-like N-termin 22.2 1.4E+02 0.0031 32.8 5.2 40 277-320 1-40 (354)
272 PRK13232 nifH nitrogenase redu 22.1 1.3E+02 0.0029 31.0 4.9 34 278-318 1-36 (273)
273 PLN02350 phosphogluconate dehy 22.1 1.2E+02 0.0027 34.8 4.9 35 274-319 3-37 (493)
274 PRK12827 short chain dehydroge 22.0 1.4E+02 0.003 29.5 4.8 33 277-319 6-38 (249)
275 PRK06953 short chain dehydroge 22.0 90 0.0019 30.7 3.4 26 294-319 8-33 (222)
276 PRK13869 plasmid-partitioning 21.9 1.7E+02 0.0036 32.7 5.8 36 277-318 120-157 (405)
277 cd03813 GT1_like_3 This family 21.7 73 0.0016 35.8 3.0 41 279-320 1-41 (475)
278 PF00185 OTCace: Aspartate/orn 21.6 1.4E+02 0.003 28.7 4.5 36 277-321 2-37 (158)
279 PRK06947 glucose-1-dehydrogena 21.6 1E+02 0.0022 30.6 3.8 32 278-318 2-33 (248)
280 PLN02657 3,8-divinyl protochlo 21.5 1.3E+02 0.0028 33.1 4.8 34 277-320 60-93 (390)
281 PRK05562 precorrin-2 dehydroge 21.5 1.2E+02 0.0025 31.3 4.1 45 267-322 14-59 (223)
282 PRK10446 ribosomal protein S6 21.5 1.3E+02 0.0029 31.5 4.8 35 278-320 1-35 (300)
283 PRK06732 phosphopantothenate-- 21.4 1.6E+02 0.0036 30.0 5.3 25 292-319 24-48 (229)
284 PRK06129 3-hydroxyacyl-CoA deh 21.4 1.3E+02 0.0029 31.8 4.8 32 278-320 3-34 (308)
285 PRK00170 azoreductase; Reviewe 21.4 1.8E+02 0.0039 28.3 5.4 40 277-319 1-43 (201)
286 PRK14495 putative molybdopteri 21.3 1.5E+02 0.0032 33.7 5.2 36 278-318 1-36 (452)
287 PRK06753 hypothetical protein; 21.1 1E+02 0.0022 33.0 3.9 30 278-318 1-30 (373)
288 COG0300 DltE Short-chain dehyd 21.0 1.6E+02 0.0035 31.1 5.2 25 293-320 15-39 (265)
289 TIGR01963 PHB_DH 3-hydroxybuty 20.9 1.2E+02 0.0026 30.0 4.2 27 294-320 8-34 (255)
290 PRK15059 tartronate semialdehy 20.9 1.1E+02 0.0025 32.2 4.1 30 278-318 1-30 (292)
291 COG3980 spsG Spore coat polysa 20.9 1.5E+02 0.0033 31.8 4.9 40 278-319 1-40 (318)
292 TIGR01969 minD_arch cell divis 20.8 1.8E+02 0.0039 29.1 5.4 28 293-320 9-38 (251)
293 PRK09599 6-phosphogluconate de 20.8 1.4E+02 0.003 31.6 4.7 31 278-319 1-31 (301)
294 PRK00211 sulfur relay protein 20.3 1.9E+02 0.0042 26.5 5.0 42 277-322 1-43 (119)
295 PRK07236 hypothetical protein; 20.2 1.3E+02 0.0028 32.6 4.5 33 275-318 4-36 (386)
296 PRK12824 acetoacetyl-CoA reduc 20.1 1.3E+02 0.0028 29.6 4.1 27 294-320 9-35 (245)
297 PRK04148 hypothetical protein; 20.1 1.2E+02 0.0026 28.8 3.6 30 277-318 17-46 (134)
No 1
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.1e-50 Score=468.48 Aligned_cols=337 Identities=31% Similarity=0.478 Sum_probs=273.6
Q ss_pred CCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCccc-----ceeeeecCccceEEEEE
Q 006770 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGI-----RKRYRVDRQDIEVAYFQ 349 (632)
Q Consensus 275 ~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~-----r~~~~i~g~~~~v~v~~ 349 (632)
+++|||+||++|++||+++||+|++++.|+++|+++||+|.||+|.|+........+. .....+.|..+.+++|.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ 558 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT 558 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence 5679999999999999999999999999999999999999999999986531100011 11123455555678899
Q ss_pred EEECCeEEEEecCc---cccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHH
Q 006770 350 AYIDGVDFVFLDSP---LFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYL 426 (632)
Q Consensus 350 ~~~dGV~v~~I~~p---~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l 426 (632)
...+||++|||+++ .||.+ +.+|+. .|+..||.+||+|+++++... .++||||||||||++++|.++
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R-~~iYg~--~Dn~~RF~~FsrAaLe~~~~~-------~~~PDIIH~HDW~TaLV~pll 628 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWR-AQYYGE--HDDFKRFSYFSRAALELLYQS-------GKKPDIIHCHDWQTAFVAPLY 628 (977)
T ss_pred EEECCeeEEEEecCCchhccCC-CCCCCC--ccHHHHHHHHHHHHHHHHHhc-------CCCCCEEEECCccHHHHHHHH
Confidence 99999999999853 26664 468873 689999999999999999764 479999999999999985555
Q ss_pred HHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccc-cccccCCCCchhHHHHHHHhhcCCeEEEechhHHH
Q 006770 427 KAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLD-LFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSW 505 (632)
Q Consensus 427 ~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~-~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~ 505 (632)
+..+...+ ..++|+|+||||+.|||.+|...+..+|++..++. .-.+.+. ....+|+++.++.+||+|+|||+.|++
T Consensus 629 ~~~y~~~~-~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~-~~~~iN~LK~GIv~AD~VtTVSptYA~ 706 (977)
T PLN02939 629 WDLYAPKG-FNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDN-AHGRINVVKGAIVYSNIVTTVSPTYAQ 706 (977)
T ss_pred HHHHhhcc-CCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhc-cCCchHHHHHHHHhCCeeEeeeHHHHH
Confidence 44444333 36789999999999999998776666788765432 1111000 113689999999999999999999999
Q ss_pred HHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCC-CCCc
Q 006770 506 ELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVR-DDVP 584 (632)
Q Consensus 506 el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~-~d~p 584 (632)
++.+ ++|.||+++++.+..++.+|+||||++.|+|..+.+++ .+|+.+++ .+|..+|.++++++|++.+ ++.|
T Consensus 707 EI~t-e~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~----~~Ys~~dl-~GK~~nK~aLRkelGL~~~d~d~p 780 (977)
T PLN02939 707 EVRS-EGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLK----VQYNANDL-QGKAANKAALRKQLGLSSADASQP 780 (977)
T ss_pred HHHH-HhccchHHHhccccCCceEEecceehhhcCCccccccc----cccChhhh-hhhhhhhHHHHHHhCCCcccccce
Confidence 9988 78899999998899999999999999999998887776 68999887 4999999999999999853 4679
Q ss_pred EEEEEcCCccccCHHHHHHHHhhccCCCcEEEEEecCh-hhHHHHH
Q 006770 585 VIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQ-TRFGRDA 629 (632)
Q Consensus 585 vIlfVGRL~~qKGvdlLLeA~~~L~~~dvqLVI~G~G~-~~le~~l 629 (632)
+|+|||||+++||+++|++|+..+...+++|||+|+|+ ..++..+
T Consensus 781 LIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL 826 (977)
T PLN02939 781 LVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREF 826 (977)
T ss_pred EEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHH
Confidence 99999999999999999999998877789999999996 3444443
No 2
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=2.5e-48 Score=432.81 Aligned_cols=340 Identities=25% Similarity=0.457 Sum_probs=263.9
Q ss_pred CCCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCC---C-Ccccceee--eecCccceEEE
Q 006770 274 GANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEP---Q-DTGIRKRY--RVDRQDIEVAY 347 (632)
Q Consensus 274 ~~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~---~-dig~r~~~--~i~g~~~~v~v 347 (632)
+.++|||+||++|++||+++||+++++..|+++|+++||+|.||+|.|+..... . +......+ .+.+....+.+
T Consensus 2 ~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (489)
T PRK14098 2 SRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHV 81 (489)
T ss_pred CCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEE
Confidence 567799999999999999999999999999999999999999999999875431 0 11000111 12211111111
Q ss_pred EEEEEC--CeEEEEecCccccccCCCCCCC-----ChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchh
Q 006770 348 FQAYID--GVDFVFLDSPLFRHLGNNIYGG-----GREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTA 420 (632)
Q Consensus 348 ~~~~~d--GV~v~~I~~p~~~~~~~~iY~~-----~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sa 420 (632)
.....+ ||++|||+++.||.+. .+|+. .|+|+..||.+||++++++++.. .++|||||+|||+++
T Consensus 82 ~~~~~~~~~v~~~~~~~~~~f~r~-~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~-------~~~pDiiH~hdw~t~ 153 (489)
T PRK14098 82 KVTALPSSKIQTYFLYNEKYFKRN-GLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRL-------GWKPDIIHCHDWYAG 153 (489)
T ss_pred EEecccCCCceEEEEeCHHHcCCC-CcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhc-------CCCCCEEEecCcHHH
Confidence 122233 6999999999998854 58864 36799999999999999998754 468999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEec
Q 006770 421 LLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVS 500 (632)
Q Consensus 421 llp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS 500 (632)
++|++++..+.......++|+|+|+||+.+||.+|...+..+ ++..+...+.++ ...+++++.++.+||+|+|||
T Consensus 154 l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~-~~~~~~~~~~~~----~~~~n~lk~~i~~ad~VitVS 228 (489)
T PRK14098 154 LVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKL-LPEEVCSGLHRE----GDEVNMLYTGVEHADLLTTTS 228 (489)
T ss_pred HHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHh-CCHHhhhhhhhc----CCcccHHHHHHHhcCcceeeC
Confidence 999999865543333458999999999999988775543322 333222211111 125789999999999999999
Q ss_pred hhHHHHHHHh-hcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCC
Q 006770 501 RGYSWELKTA-EGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPV 579 (632)
Q Consensus 501 ~~~a~el~~~-~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~ 579 (632)
+.+++++.+. ++|+|+.++++....++.+|+||||++.|+|..+..+. .+|+.+++ .+|..+|.++++++|++.
T Consensus 229 ~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~----~~~~~~~~-~~k~~~k~~l~~~lgl~~ 303 (489)
T PRK14098 229 PRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIK----KRYSIERL-DGKLENKKALLEEVGLPF 303 (489)
T ss_pred HHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCccccccc----ccCCcchh-hhHHHHHHHHHHHhCCCC
Confidence 9999999762 45778888887778999999999999999997665443 57777665 478889999999999997
Q ss_pred CCCCcEEEEEcCCccccCHHHHHHHHhhccCCCcEEEEEecChhhHHHHHHh
Q 006770 580 RDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAEE 631 (632)
Q Consensus 580 ~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~~dvqLVI~G~G~~~le~~lke 631 (632)
+++.|+|+|+|||+++||+++|++|++.+.+.+++|+|+|+|+..+++.+++
T Consensus 304 ~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~ 355 (489)
T PRK14098 304 DEETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQD 355 (489)
T ss_pred ccCCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHH
Confidence 7788999999999999999999999999987799999999998666555543
No 3
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=3.1e-48 Score=431.74 Aligned_cols=335 Identities=33% Similarity=0.470 Sum_probs=267.8
Q ss_pred CCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCC-cccceeeee-cCccceEEEEEEEE
Q 006770 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQD-TGIRKRYRV-DRQDIEVAYFQAYI 352 (632)
Q Consensus 275 ~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~d-ig~r~~~~i-~g~~~~v~v~~~~~ 352 (632)
|+.|||+||++|+.||+++||+++++..|+++|+++||+|.||+|.|+....... ......+.+ -| ..+++++...
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 78 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFG--GPARLLAARA 78 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCC--ceEEEEEEEe
Confidence 3679999999999999999999999999999999999999999999987632111 100011111 01 1456777888
Q ss_pred CCeEEEEecCccccccCCCCCCC----ChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHH
Q 006770 353 DGVDFVFLDSPLFRHLGNNIYGG----GREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKA 428 (632)
Q Consensus 353 dGV~v~~I~~p~~~~~~~~iY~~----~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~ 428 (632)
+||++|||+++.||.+...+|+. .|.|+..||.+||+|++++++.+. ..++|||||+|||+++++|.+++.
T Consensus 79 ~~v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~-----~~~~pDIiH~Hdw~~~l~~~~l~~ 153 (485)
T PRK14099 79 GGLDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLV-----PGFVPDIVHAHDWQAGLAPAYLHY 153 (485)
T ss_pred CCceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhc-----cCCCCCEEEECCcHHHHHHHHHHh
Confidence 99999999999999866557853 467999999999999999887531 146899999999999999988753
Q ss_pred HhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccc--cccccCCCCchhHHHHHHHhhcCCeEEEechhHHHH
Q 006770 429 YYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLD--LFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWE 506 (632)
Q Consensus 429 ~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~--~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~e 506 (632)
.. ..++|+|+|+||+.++|.++...+..+|+++.++. .+++++ .+++++.++..||+|+|||+.++++
T Consensus 154 ~~-----~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~k~~i~~ad~vitVS~~~a~e 223 (485)
T PRK14099 154 SG-----RPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYG-----GIGYLKAGLQLADRITTVSPTYALE 223 (485)
T ss_pred CC-----CCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCC-----CccHHHHHHHhcCeeeecChhHHHH
Confidence 11 24689999999999999887665555666654332 122231 3577899999999999999999999
Q ss_pred HHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEE
Q 006770 507 LKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVI 586 (632)
Q Consensus 507 l~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvI 586 (632)
+.+.++|+|++++++.+..++.+|+||||++.|+|..+..++ .+|+.+++ .+|..+|..+++++|++.+++.++|
T Consensus 224 i~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~----~~~~~~~~-~~k~~~k~~l~~~~gl~~~~~~~li 298 (485)
T PRK14099 224 IQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIA----ATYDVETL-AARAANKAALQARFGLDPDPDALLL 298 (485)
T ss_pred HhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhh----hcCChhHH-HhHHHhHHHHHHHcCCCcccCCcEE
Confidence 987666788887777788999999999999999998665554 57777665 4778889999999999866678999
Q ss_pred EEEcCCccccCHHHHHHHHhhccCCCcEEEEEecChhhHHHHHHh
Q 006770 587 GFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAEE 631 (632)
Q Consensus 587 lfVGRL~~qKGvdlLLeA~~~L~~~dvqLVI~G~G~~~le~~lke 631 (632)
+++|||+++||+++|++|++.+.+.+++|||+|+|++.+++.+++
T Consensus 299 ~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~ 343 (485)
T PRK14099 299 GVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRA 343 (485)
T ss_pred EEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHH
Confidence 999999999999999999999887789999999998666665543
No 4
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=1.3e-46 Score=415.88 Aligned_cols=333 Identities=42% Similarity=0.649 Sum_probs=270.5
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCC----cccceeeeecCccceEEEEEEEEC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQD----TGIRKRYRVDRQDIEVAYFQAYID 353 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~d----ig~r~~~~i~g~~~~v~v~~~~~d 353 (632)
|||+||++|++|+.++||+|+++..|+++|+++||+|+|++|.|+....... ......+.+.|..+.++++....+
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 8999999999999999999999999999999999999999999987533211 111224456777888899999999
Q ss_pred CeEEEEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhc
Q 006770 354 GVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDN 433 (632)
Q Consensus 354 GV~v~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~ 433 (632)
||++|+|+++.++.+...+|+..+.|+..++.+|++++++++++. ..+|||||+|+|++++++.+++..+.
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~-------~~~~DiiH~hdw~~~~~~~~l~~~~~-- 151 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGL-------GWQPDVVHAHDWHTALVPALLKAVYR-- 151 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhc-------CCCCCEEEECCcHHHHHHHHHHhhcc--
Confidence 999999999987765445887556788899999999999998764 36899999999999999998876432
Q ss_pred CCCCCCeEEEEEeCCcccCCCCCCccccCCCCcccccc--ccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhh
Q 006770 434 GLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDL--FKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAE 511 (632)
Q Consensus 434 ~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~--l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~ 511 (632)
..++|+|+|+|++.++|.+|...+..++++..++.. ++++ ..+++++.++..||+|++||+.+++++.+..
T Consensus 152 --~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~ 224 (473)
T TIGR02095 152 --PNPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFY-----GRVNFLKGGIVYADRVTTVSPTYAREILTPE 224 (473)
T ss_pred --CCCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcC-----CchHHHHHHHHhCCcCeecCHhHHHHhcCCc
Confidence 014899999999988988876655545665433221 1222 2578899999999999999999999998756
Q ss_pred cCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcC
Q 006770 512 GGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGR 591 (632)
Q Consensus 512 ~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGR 591 (632)
+|+|+.++++.+..++.+|+||||++.|+|..+..+. .+|+.+++ .+|..+|..+++++|++.+++.++|+|+||
T Consensus 225 ~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~----~~~~~~~~-~~k~~~k~~l~~~~gl~~~~~~~~i~~vGr 299 (473)
T TIGR02095 225 FGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLK----ANYSADDL-AGKAENKEALQEELGLPVDDDVPLFGVISR 299 (473)
T ss_pred CCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccc----cCcCccch-hhhhhhHHHHHHHcCCCccCCCCEEEEEec
Confidence 7788887777788999999999999999997665553 56776665 367778899999999986568899999999
Q ss_pred CccccCHHHHHHHHhhccCCCcEEEEEecChhhHHHHHHh
Q 006770 592 LDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAEE 631 (632)
Q Consensus 592 L~~qKGvdlLLeA~~~L~~~dvqLVI~G~G~~~le~~lke 631 (632)
++++||+++|++|++.+.+.+++|+|+|+|++.+++.+++
T Consensus 300 l~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~ 339 (473)
T TIGR02095 300 LTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRE 339 (473)
T ss_pred CccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHH
Confidence 9999999999999999987789999999997656555543
No 5
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=1.9e-44 Score=398.85 Aligned_cols=325 Identities=38% Similarity=0.563 Sum_probs=253.8
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEE--EECCe
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQA--YIDGV 355 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~--~~dGV 355 (632)
|||+||++|++|+.++||+|+++..|+++|+++||+|+|++|.|+...... ........+ + .++++.. ..+||
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~-~~~~~~~~~---~-~~~~~~~~~~~~gv 75 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKL-RDAQVVGRL---D-LFTVLFGHLEGDGV 75 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhh-cCceEEEEe---e-eEEEEEEeEEcCCc
Confidence 899999999999999999999999999999999999999999997643210 000100111 0 1334444 45899
Q ss_pred EEEEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCC
Q 006770 356 DFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGL 435 (632)
Q Consensus 356 ~v~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~ 435 (632)
++|+++++.++.+ +.+|+ +.|+..|+.+|+++++++++++ ..+|||||+|+|++++++.+++..+ .. .
T Consensus 76 ~v~~v~~~~~~~~-~~~y~--~~d~~~r~~~f~~~~~~~~~~~-------~~~pDiiH~h~w~~~~~~~~l~~~~-~~-~ 143 (466)
T PRK00654 76 PVYLIDAPHLFDR-PSGYG--YPDNGERFAFFSWAAAEFAEGL-------DPRPDIVHAHDWHTGLIPALLKEKY-WR-G 143 (466)
T ss_pred eEEEEeCHHHcCC-CCCCC--CcChHHHHHHHHHHHHHHHHhc-------CCCCceEEECCcHHHHHHHHHHHhh-hc-c
Confidence 9999999888764 35776 4577889999999999998765 3589999999999999999887543 21 1
Q ss_pred CCCCeEEEEEeCCcccCCCCCCccccCCCCccccc--cccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcC
Q 006770 436 MQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLD--LFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGG 513 (632)
Q Consensus 436 ~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~--~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G 513 (632)
..++|+|+|+|++.++|.++...+...+++..++. .++++ ..+++++.++..||+|+|||+.+++++.+..+|
T Consensus 144 ~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~ 218 (466)
T PRK00654 144 YPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFHLEGLEFY-----GQISFLKAGLYYADRVTTVSPTYAREITTPEFG 218 (466)
T ss_pred CCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcCchhhhcC-----CcccHHHHHHHhcCcCeeeCHHHHHHhccccCC
Confidence 34789999999999998877655544555543321 12222 136788999999999999999999999865567
Q ss_pred CccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCc
Q 006770 514 WGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLD 593 (632)
Q Consensus 514 ~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~ 593 (632)
+|+.+.++.+..|+.+|+||||++.|+|..+..++ .+|+..++ ++|..+|..+++++|++. ++.++|+|+|||+
T Consensus 219 ~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~----~~~~~~~~-~~k~~~k~~l~~~~gl~~-~~~~~i~~vGRl~ 292 (466)
T PRK00654 219 YGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLA----ANYSADDL-EGKAENKRALQERFGLPD-DDAPLFAMVSRLT 292 (466)
T ss_pred cChHHHHHhcccCceEecCCCCccccCCccCcccc----cccChhhh-hchHHHHHHHHHHhCCCC-CCCcEEEEeeccc
Confidence 77776676678899999999999999997665443 46766665 478888999999999983 4789999999999
Q ss_pred cccCHHHHHHHHhhccCCCcEEEEEecChhhHHHHHH
Q 006770 594 HQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAE 630 (632)
Q Consensus 594 ~qKGvdlLLeA~~~L~~~dvqLVI~G~G~~~le~~lk 630 (632)
++||+++|++|++.+.+.+++|+|+|+|+..++..++
T Consensus 293 ~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~ 329 (466)
T PRK00654 293 EQKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFR 329 (466)
T ss_pred cccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHH
Confidence 9999999999999988779999999999765555444
No 6
>PLN02316 synthase/transferase
Probab=100.00 E-value=1.4e-42 Score=407.22 Aligned_cols=299 Identities=29% Similarity=0.489 Sum_probs=238.9
Q ss_pred CCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccc--eeeeecCccceEEEEEEEE
Q 006770 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIR--KRYRVDRQDIEVAYFQAYI 352 (632)
Q Consensus 275 ~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r--~~~~i~g~~~~v~v~~~~~ 352 (632)
+++|||+||+.|++|+.++||+++++..|+++|+++||+|.||+|.|............ ..+.+.+ ..+.++....
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~--~~~~v~~~~~ 662 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGG--TEIKVWFGKV 662 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCC--EEEEEEEEEE
Confidence 56799999999999999999999999999999999999999999999864221100111 1222223 2466788889
Q ss_pred CCeEEEEecCcc-ccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhh
Q 006770 353 DGVDFVFLDSPL-FRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYR 431 (632)
Q Consensus 353 dGV~v~~I~~p~-~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~ 431 (632)
+||++|+|+++. +|.+ ..+|+ ++|+..||.+||+++++++++. .++|||||||||+++++|.+++..+.
T Consensus 663 ~GV~vyfl~~~~~~F~r-~~~Yg--~~Dd~~RF~~F~~Aale~l~~~-------~~~PDIIHaHDW~talva~llk~~~~ 732 (1036)
T PLN02316 663 EGLSVYFLEPQNGMFWA-GCVYG--CRNDGERFGFFCHAALEFLLQS-------GFHPDIIHCHDWSSAPVAWLFKDHYA 732 (1036)
T ss_pred CCcEEEEEeccccccCC-CCCCC--chhHHHHHHHHHHHHHHHHHhc-------CCCCCEEEECCChHHHHHHHHHHhhh
Confidence 999999999763 6543 45786 4789999999999999998764 36899999999999999998876554
Q ss_pred hcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhh
Q 006770 432 DNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAE 511 (632)
Q Consensus 432 ~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~ 511 (632)
..+ ..++|+|+|+|++.++ .+.++.++.+||+|+|||+.+++++...
T Consensus 733 ~~~-~~~~p~V~TiHnl~~~-------------------------------~n~lk~~l~~AD~ViTVS~tya~EI~~~- 779 (1036)
T PLN02316 733 HYG-LSKARVVFTIHNLEFG-------------------------------ANHIGKAMAYADKATTVSPTYSREVSGN- 779 (1036)
T ss_pred hhc-cCCCCEEEEeCCcccc-------------------------------hhHHHHHHHHCCEEEeCCHHHHHHHHhc-
Confidence 332 3578999999996432 1234567889999999999999998752
Q ss_pred cCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcC
Q 006770 512 GGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGR 591 (632)
Q Consensus 512 ~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGR 591 (632)
+ .+..+..|+.+|+||||++.|+|..+.+++ .+|+.+++..+|..++..+++++|++. .+.|+|+||||
T Consensus 780 ~------~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp----~~y~~~~~~~gK~~~k~~Lr~~lGL~~-~d~plVg~VGR 848 (1036)
T PLN02316 780 S------AIAPHLYKFHGILNGIDPDIWDPYNDNFIP----VPYTSENVVEGKRAAKEALQQRLGLKQ-ADLPLVGIITR 848 (1036)
T ss_pred c------CcccccCCEEEEECCccccccCCccccccc----ccCCchhhhhhhhhhHHHHHHHhCCCc-ccCeEEEEEec
Confidence 1 122346899999999999999998776665 478877776788899999999999983 47899999999
Q ss_pred CccccCHHHHHHHHhhccCCCcEEEEEecCh-hhHHHHH
Q 006770 592 LDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQ-TRFGRDA 629 (632)
Q Consensus 592 L~~qKGvdlLLeA~~~L~~~dvqLVI~G~G~-~~le~~l 629 (632)
|++|||+++|++|++.+++.+++|||+|+|+ ..++..+
T Consensus 849 L~~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l 887 (1036)
T PLN02316 849 LTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDF 887 (1036)
T ss_pred cccccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHH
Confidence 9999999999999999887799999999995 3344433
No 7
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.8e-43 Score=384.83 Aligned_cols=334 Identities=35% Similarity=0.463 Sum_probs=269.5
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcc----cceeeeecCccceEEEEEEEEC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTG----IRKRYRVDRQDIEVAYFQAYID 353 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig----~r~~~~i~g~~~~v~v~~~~~d 353 (632)
|||++++.|+.|+.++||+++++..|+++|+++|++|.|+.|.|+...+..... .+..+.+.+......+.....+
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 899999999999999999999999999999999999999999998533321110 0111112222222223333323
Q ss_pred -CeEEEEecCccccccC-CCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhh
Q 006770 354 -GVDFVFLDSPLFRHLG-NNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYR 431 (632)
Q Consensus 354 -GV~v~~I~~p~~~~~~-~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~ 431 (632)
+|++++|+++.++.+. ...|+ +.|+..||.+|++++++.+.... ..+.|||||+||||++++|++++..+.
T Consensus 81 ~~v~~~lid~~~~f~r~~~~~~~--~~d~~~Rf~~F~~a~~~~~~~~~-----~~~~pDIvH~hDWqt~L~~~~lk~~~~ 153 (487)
T COG0297 81 GGVDLYLIDNPALFKRPDSTLYG--YYDNAERFAFFSLAAAELAPLGL-----ISWLPDIVHAHDWQTGLLPAYLKQRYR 153 (487)
T ss_pred CCCcEEEecChhhcCccccccCC--CCcHHHHHHHHHHHHHHHhhhcC-----CCCCCCEEEeecHHHHHHHHHHhhccc
Confidence 3999999999888752 22343 57889999999999999875431 015899999999999999999987531
Q ss_pred hcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccc--cccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHH
Q 006770 432 DNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLD--LFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKT 509 (632)
Q Consensus 432 ~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~--~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~ 509 (632)
....+|.|+||||+.+||.++......+++|...+. .+.++ + ..+++|.++.+||.|+|||+.|++++.+
T Consensus 154 ---~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~----~-~~~~lK~gi~~ad~vttVSptYa~Ei~t 225 (487)
T COG0297 154 ---SGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFY----G-QISFLKGGLYYADAVTTVSPTYAGEIYT 225 (487)
T ss_pred ---ccccCCeEEEEeeceeecccchhhHHHhcCCHHHhhhceeeec----C-cchhhhhhheeccEEEEECHHHHHhhcc
Confidence 135799999999999999998555666788864432 22333 2 3688999999999999999999999998
Q ss_pred hhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEE
Q 006770 510 AEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFI 589 (632)
Q Consensus 510 ~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfV 589 (632)
.++|.|+++++.....++++|.||||.+.|+|..+.++. .+|+.+++. .|..+|.+|++++||+.+.+.|+++++
T Consensus 226 ~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~----~~y~~~~~~-~k~~nk~~L~~~~gL~~~~~~pl~~~v 300 (487)
T COG0297 226 PEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIA----ANYSAEVLP-AKAENKVALQERLGLDVDLPGPLFGFV 300 (487)
T ss_pred ccccccchhhhhhccccEEEEEeeEEecccCcccccchh----ccCCccchh-hhHHHHHHHHHHhCCCCCCCCcEEEEe
Confidence 889999999998888999999999999999999887664 588887774 588999999999999987789999999
Q ss_pred cCCccccCHHHHHHHHhhccCCCcEEEEEecChhhHHHHHHh
Q 006770 590 GRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAEE 631 (632)
Q Consensus 590 GRL~~qKGvdlLLeA~~~L~~~dvqLVI~G~G~~~le~~lke 631 (632)
|||+.|||+|++++|+..+++...|||++|+|++.+|..++.
T Consensus 301 sRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~ 342 (487)
T COG0297 301 SRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDPELEEALRA 342 (487)
T ss_pred eccccccchhHHHHHHHHHHHhCceEEEEecCcHHHHHHHHH
Confidence 999999999999999999998889999999999999987765
No 8
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=4.2e-42 Score=378.55 Aligned_cols=337 Identities=40% Similarity=0.607 Sum_probs=259.7
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccc----eeeeecCccceEEEEEEEECC
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIR----KRYRVDRQDIEVAYFQAYIDG 354 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r----~~~~i~g~~~~v~v~~~~~dG 354 (632)
||+||++|++|+.++||+|+++.+|+++|+++||+|+||+|.|+........... ....+.+....+++++...+|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 6999999999999999999999999999999999999999999875432110001 112345667788889999999
Q ss_pred eEEEEecCccccccCCCCC---CCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhh
Q 006770 355 VDFVFLDSPLFRHLGNNIY---GGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYR 431 (632)
Q Consensus 355 V~v~~I~~p~~~~~~~~iY---~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~ 431 (632)
|++++++++.++.+. .+| ...+.++..++.+|+++++++++.+ ..+|||||+|||++++++.+++..+.
T Consensus 81 v~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~-------~~~pDviH~hd~~t~~~~~~l~~~~~ 152 (476)
T cd03791 81 VPVYFLDNPDYFDRP-GLYDDSGYDYEDNAERFALFSRAALELLRRL-------GWKPDIIHCHDWHTGLVPALLKEKYA 152 (476)
T ss_pred ceEEEEcChHHcCCC-CCCCccCCCCccHHHHHHHHHHHHHHHHHhc-------CCCCcEEEECchHHHHHHHHHHHhhc
Confidence 999999998876532 222 1224678889999999999998864 36899999999999999988876543
Q ss_pred hcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhh
Q 006770 432 DNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAE 511 (632)
Q Consensus 432 ~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~ 511 (632)
. ....++|+|+|+|++.++|.++...+...+.+.... +...+......+++++.++..||.|++||+.+++++.+..
T Consensus 153 ~-~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~ 229 (476)
T cd03791 153 D-PFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEEL--FHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPE 229 (476)
T ss_pred c-ccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccch--hhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCC
Confidence 2 223589999999999888877655433333321100 0000111123568899999999999999999999998766
Q ss_pred cCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcC
Q 006770 512 GGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGR 591 (632)
Q Consensus 512 ~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGR 591 (632)
+|.|+..+++.+..++.+|+||||.+.|+|..+..+. .+|+.++ ..+|..+|..+++++|++.+++.++|+|+||
T Consensus 230 ~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~----~~~~~~~-~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGr 304 (476)
T cd03791 230 FGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLP----ANYSADD-LEGKAENKAALQEELGLPVDPDAPLFGFVGR 304 (476)
T ss_pred CCcchHHHHHhccCCeEEEeCCCcCcccCccccchhh----hcCCccc-cccHHHHHHHHHHHcCCCcCCCCCEEEEEee
Confidence 6777777776678999999999999999987654432 3444332 3578889999999999975568999999999
Q ss_pred CccccCHHHHHHHHhhccCCCcEEEEEecChhhHHHHHHh
Q 006770 592 LDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAEE 631 (632)
Q Consensus 592 L~~qKGvdlLLeA~~~L~~~dvqLVI~G~G~~~le~~lke 631 (632)
++++||+++|++|++.+.+.+++|+|+|+|++.+++.+++
T Consensus 305 l~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~ 344 (476)
T cd03791 305 LTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRE 344 (476)
T ss_pred ccccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHH
Confidence 9999999999999999987789999999998766665543
No 9
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=100.00 E-value=8.6e-36 Score=304.63 Aligned_cols=232 Identities=36% Similarity=0.583 Sum_probs=169.1
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCC-Cc-cc-ce------eeeecCccceEEEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQ-DT-GI-RK------RYRVDRQDIEVAYFQ 349 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~-di-g~-r~------~~~i~g~~~~v~v~~ 349 (632)
||+||++||+||.++||+|+++..|+++|+++||+|+||+|.|+...... .. .+ +. .+.+.. ...+++++
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~v~~ 79 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVGV-WYEVRVYR 79 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE-----EEEEE
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEecccccccccccc-ceEEEEEE
Confidence 79999999999999999999999999999999999999999996543221 00 00 00 112222 25678888
Q ss_pred EEECCeEEEEecCccccccCCCCCCC---ChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHH
Q 006770 350 AYIDGVDFVFLDSPLFRHLGNNIYGG---GREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYL 426 (632)
Q Consensus 350 ~~~dGV~v~~I~~p~~~~~~~~iY~~---~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l 426 (632)
...+||++++|+++.++.++ .+|+. .+.|+..|+++|+++++++++++ .++||||||||||++++|+++
T Consensus 80 ~~~~~v~v~~i~~~~~f~r~-~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l-------~~~pDIIH~hDW~tal~p~~l 151 (245)
T PF08323_consen 80 YPVDGVPVYFIDNPEYFDRP-GIYGDNGGDYPDNAERFAFFSRAALELLKKL-------GWKPDIIHCHDWHTALAPLYL 151 (245)
T ss_dssp EEETTEEEEEEESHHHHGSS-SSSBSTSSBHTTHHHHHHHHHHHHHHHHCTC-------T-S-SEEEEECGGGTTHHHHH
T ss_pred EEcCCccEEEecChhhcccc-ceeccCCCcchhHHHHHHHHHHHHHHHHHhh-------CCCCCEEEecCchHHHHHHHh
Confidence 88999999999999988754 49975 46889999999999999999875 368999999999999999999
Q ss_pred HHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHH
Q 006770 427 KAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWE 506 (632)
Q Consensus 427 ~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~e 506 (632)
+..++.++...++|+|+||||+.+||.++...+..+|+|...+.....+ ..+..+|+++.++..||+|+|||+.|++|
T Consensus 152 k~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~--~~~~~in~lk~gi~~AD~v~TVS~~Ya~E 229 (245)
T PF08323_consen 152 KERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEY--EFYGQINFLKAGIVYADKVTTVSPTYARE 229 (245)
T ss_dssp HHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTT--EETTEEEHHHHHHHHSSEEEESSHHHHHH
T ss_pred ccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhcccccc--ccccccCHHHHHHHhcCEeeeCCHHHHHH
Confidence 8866544555689999999999999999987777788886443211111 11236789999999999999999999999
Q ss_pred HHHhhcCCccccccc
Q 006770 507 LKTAEGGWGLHNIIN 521 (632)
Q Consensus 507 l~~~~~G~gL~~il~ 521 (632)
+.+..+|+||+++|+
T Consensus 230 i~~~~~g~GL~~~l~ 244 (245)
T PF08323_consen 230 IQTPEFGEGLEGLLR 244 (245)
T ss_dssp TTSHHHHTT-HHHHH
T ss_pred HhCcccCCChHHHhc
Confidence 998888889987763
No 10
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.97 E-value=1.5e-29 Score=287.30 Aligned_cols=338 Identities=21% Similarity=0.215 Sum_probs=244.1
Q ss_pred EEEEecccC-----CCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCC--CCCCC-c---------------------
Q 006770 280 VILVAAECG-----PWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY--AEPQD-T--------------------- 330 (632)
Q Consensus 280 IL~It~e~~-----P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~--~~~~d-i--------------------- 330 (632)
|+.++.||. |. ..||+|+.+....++++.+|.....++..|... .+..+ .
T Consensus 1 ~ayf~~E~g~~~~~p~-ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLPI-YSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 466777754 64 789999999999999999999999998765431 11000 0
Q ss_pred -----ccceeeeecCccceEEEEEEEECCeEEEEecCcc----ccccC--CCCCCCChhhHHHHHHHHHHHHHHhhhhcC
Q 006770 331 -----GIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPL----FRHLG--NNIYGGGREDILKRMVLFCKAAIEIPWYVP 399 (632)
Q Consensus 331 -----g~r~~~~i~g~~~~v~v~~~~~dGV~v~~I~~p~----~~~~~--~~iY~~~~~d~~~r~~lf~kav~e~i~~l~ 399 (632)
.++..+++.|....+++|....++|++++++++. ++.+. ..+|+.++.+.+.++.+|++|+++.++.+
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~~D~~~R~~Qe~fl~~a~l~~l~~l- 158 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYGGDKEMRIAQEIVLGIGGVRALRAL- 158 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-
Confidence 0112344566667778898888999999999874 44432 24797666667778899999999999865
Q ss_pred CCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcC-----C--CCCCeEEEEEeCCcccCC--CCCCccc--------cC
Q 006770 400 CGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNG-----L--MQYTRSLLVIHNIAHQGR--GPVSDFV--------YT 462 (632)
Q Consensus 400 ~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~-----~--~~~iPvV~TIHn~~~qg~--~p~~~l~--------~~ 462 (632)
+++|||||+||||++++++++.......+ . .....+|+|+||+.++|. ||.+.+. .+
T Consensus 159 ------~~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~~~~ 232 (601)
T TIGR02094 159 ------GIDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYAANL 232 (601)
T ss_pred ------CCCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhhhHh
Confidence 46999999999999999988632211111 0 124679999999999997 8876552 24
Q ss_pred CCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCc
Q 006770 463 DLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPM 542 (632)
Q Consensus 463 glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~ 542 (632)
|++...+.......+.....++|++.++..||.|.+||+.+++-...-. + .+.+.+.....++..|.||||...|+|.
T Consensus 233 gl~~~~~~~~~~~~~~~~~~vnm~~lai~~S~~vngVS~lh~~v~~~l~-~-~l~~~~~~~~~~i~gItNGId~~~W~~~ 310 (601)
T TIGR02094 233 GLPREQLLALGRENPDDPEPFNMTVLALRLSRIANGVSKLHGEVSRKMW-Q-FLYPGYEEEEVPIGYVTNGVHNPTWVAP 310 (601)
T ss_pred CCCHHHHHhhhhhccCccCceeHHHHHHHhCCeeeeecHHHHHHHHHHH-H-hhhhhcccccCCccceeCCccccccCCH
Confidence 5654433211111110113579999999999999999999987333211 1 1222333345679999999999999987
Q ss_pred cccccccCCCccccccc---------------------ccCCchHHHHHHHH---------------------HhCCCCC
Q 006770 543 YDIHLTSDGYTNYCLDT---------------------LHTGKPQCKAALQR---------------------EFGLPVR 580 (632)
Q Consensus 543 ~~~~l~~~~~~~~s~ed---------------------~~~~K~~~k~~Lrk---------------------~lGL~~~ 580 (632)
.+..+. .+|..++ ++.+|..+|.+|++ ++|++.+
T Consensus 311 ~~~~l~----~~y~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~d 386 (601)
T TIGR02094 311 ELRDLY----ERYLGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLD 386 (601)
T ss_pred HHHHHH----HHhCCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccC
Confidence 665553 3455444 45789999999987 5777778
Q ss_pred CCCcEEEEEcCCccccCHHHHHHHHhhccC------CCcEEEEEecChhh------HHHHHHh
Q 006770 581 DDVPVIGFIGRLDHQKGVDLIAEAIPWMMG------QDVQLSHVGHWQTR------FGRDAEE 631 (632)
Q Consensus 581 ~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~------~dvqLVI~G~G~~~------le~~lke 631 (632)
++.++|+|++||+.|||++++++++.++.+ .++|||++|.|.+. +++.+.+
T Consensus 387 pd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~ 449 (601)
T TIGR02094 387 PDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVE 449 (601)
T ss_pred CCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHH
Confidence 899999999999999999999999998863 58999999999876 7776654
No 11
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.93 E-value=5.5e-25 Score=254.53 Aligned_cols=333 Identities=20% Similarity=0.237 Sum_probs=229.9
Q ss_pred EEEEEecccC-----CCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCC-C-CC-----CC-----C------c-----
Q 006770 279 NVILVAAECG-----PWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN-Y-AE-----PQ-----D------T----- 330 (632)
Q Consensus 279 KIL~It~e~~-----P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~-~-~~-----~~-----d------i----- 330 (632)
-|+.++.||. |. ..||+|+.++...++++.+|..++-|...|.. + .+ .. + .
T Consensus 87 ~~aYFs~E~gl~~~lpi-YsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~ 165 (778)
T cd04299 87 VAAYFSMEFGLHESLPI-YSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV 165 (778)
T ss_pred eeEEeccccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE
Confidence 4559999874 64 78999999999999999999999999876543 1 11 00 0 0
Q ss_pred ------ccceeeeecCccceEEEEEEEECCeEEEEecCccc----ccc--CCCCCCCChhhHHHHHHHHHHHHHHhhhhc
Q 006770 331 ------GIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLF----RHL--GNNIYGGGREDILKRMVLFCKAAIEIPWYV 398 (632)
Q Consensus 331 ------g~r~~~~i~g~~~~v~v~~~~~dGV~v~~I~~p~~----~~~--~~~iY~~~~~d~~~r~~lf~kav~e~i~~l 398 (632)
.+...+.+.|....+++|+..+.+|++|+++++.+ +.+ ...+|+++....+.++.+|+.+.+++++.+
T Consensus 166 ~~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg~D~~~Rl~Qe~~Lg~agl~~Lr~l 245 (778)
T cd04299 166 RDADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYGGDQETRIQQEILLGIGGVRALRAL 245 (778)
T ss_pred ecCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 01234456777777889999999999999998763 332 234787643333444789999999999865
Q ss_pred CCCCCCCCCCccEEEEcCcchhHHHH-----HHHHH-hhhcC--CCCCCeEEEEEeCCcccC--CCCCCcccc-------
Q 006770 399 PCGGVCYGDGNLVFIANDWHTALLPV-----YLKAY-YRDNG--LMQYTRSLLVIHNIAHQG--RGPVSDFVY------- 461 (632)
Q Consensus 399 ~~~~~~~~~~pDIIHaHdw~sallp~-----~l~~~-~~~~~--~~~~iPvV~TIHn~~~qg--~~p~~~l~~------- 461 (632)
+.+|||||+||||++++++ ++... +.... ......+|+|+||..++| .||.+.+..
T Consensus 246 -------g~~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~ 318 (778)
T cd04299 246 -------GIKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYAR 318 (778)
T ss_pred -------CCCCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHH
Confidence 3589999999999999998 43221 00000 012568999999999999 888765522
Q ss_pred -CCCCccccccccccCCC-CchhHHHHHHHhhcCCeEEEechhH---HHHHHHh-hcCCccccccccCCCcEEEeeCCCc
Q 006770 462 -TDLPGHYLDLFKLYDPV-GGEHFNIFAAGLKTADRVVTVSRGY---SWELKTA-EGGWGLHNIINEVDWKLSGIVNGID 535 (632)
Q Consensus 462 -~glp~~~~~~l~~~~p~-~g~~~~i~r~~l~~AD~VItVS~~~---a~el~~~-~~G~gL~~il~~~~~Ki~vIpNGID 535 (632)
+|++...+..+....+. .+..++|.+.++..|+.|.+||+.+ ++++... +.|+++ ...++..|.||||
T Consensus 319 ~lgl~~~~~~~lg~e~~~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p~------~~~~i~~ITNGVh 392 (778)
T cd04299 319 ELGLSRDRFLALGRENPGDDPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFPV------EEVPIGHVTNGVH 392 (778)
T ss_pred HcCCCHHHHhhhccccccCccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCCc------ccCceeceeCCcc
Confidence 45554332211111100 1235899999999999999999987 5555432 233332 3568999999999
Q ss_pred CCCCC-Ccccccccc---CCC-cc------------cccccccCCchHHHHHHHHHh---------------------CC
Q 006770 536 TKEWS-PMYDIHLTS---DGY-TN------------YCLDTLHTGKPQCKAALQREF---------------------GL 577 (632)
Q Consensus 536 ~~~F~-P~~~~~l~~---~~~-~~------------~s~ed~~~~K~~~k~~Lrk~l---------------------GL 577 (632)
...|. |..+..+.. ++. .+ ...++++..|..+|.+|.+.. +.
T Consensus 393 ~~~W~~P~~~~l~~~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~ 472 (778)
T cd04299 393 VPTWVAPEMRELYDRYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADD 472 (778)
T ss_pred hhhhcCHHHHHHHHHhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCC
Confidence 99998 765443310 000 00 012335667888888876553 44
Q ss_pred CCCCCCcEEEEEcCCccccCHHHHHHHHhhccC------CCcEEEEEecChhhH
Q 006770 578 PVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG------QDVQLSHVGHWQTRF 625 (632)
Q Consensus 578 ~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~------~dvqLVI~G~G~~~l 625 (632)
+.+++.++|+|++|++.|||.+++++.+.++.+ .++||||+|.+.+.+
T Consensus 473 ~ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d 526 (778)
T cd04299 473 VLDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPAD 526 (778)
T ss_pred ccCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccc
Confidence 456788999999999999999999999888743 489999999998533
No 12
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.91 E-value=2.4e-22 Score=217.73 Aligned_cols=273 Identities=19% Similarity=0.189 Sum_probs=170.7
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEE
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDF 357 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v 357 (632)
|||++++..|+|. .||++.++.+|+++|.++||+|+|+|+... ++.. .. ...+ .+ ..+..+..+|+++
T Consensus 1 mkIlii~~~~~P~--~~g~~~~~~~l~~~L~~~G~~V~vit~~~~-~~~~-~~--~~~~--~~----~~~~~~~~~~i~v 68 (412)
T PRK10307 1 MKILVYGINYAPE--LTGIGKYTGEMAEWLAARGHEVRVITAPPY-YPQW-RV--GEGY--SA----WRYRRESEGGVTV 68 (412)
T ss_pred CeEEEEecCCCCC--ccchhhhHHHHHHHHHHCCCeEEEEecCCC-CCCC-CC--Cccc--cc----ccceeeecCCeEE
Confidence 8999999998884 799999999999999999999999996521 1110 00 0000 00 0011234678888
Q ss_pred EEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHh-hhhcCCCCCCCCCCccEEEEcCcch--hHHHHHHHHHhhhcC
Q 006770 358 VFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEI-PWYVPCGGVCYGDGNLVFIANDWHT--ALLPVYLKAYYRDNG 434 (632)
Q Consensus 358 ~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~-i~~l~~~~~~~~~~pDIIHaHdw~s--allp~~l~~~~~~~~ 434 (632)
++++.... +..+....+..+..|....... ++.. ..+|||||+|.+.. ++++.+++.
T Consensus 69 ~r~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~Div~~~~p~~~~~~~~~~~~~------ 128 (412)
T PRK10307 69 WRCPLYVP-------KQPSGLKRLLHLGSFALSSFFPLLAQR-------RWRPDRVIGVVPTLFCAPGARLLAR------ 128 (412)
T ss_pred EEccccCC-------CCccHHHHHHHHHHHHHHHHHHHhhcc-------CCCCCEEEEeCCcHHHHHHHHHHHH------
Confidence 87753211 0000011111122222222222 2211 25799999997543 223333322
Q ss_pred CCCCCeEEEEEeCCcccCCCCCCccccCCC-CccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcC
Q 006770 435 LMQYTRSLLVIHNIAHQGRGPVSDFVYTDL-PGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGG 513 (632)
Q Consensus 435 ~~~~iPvV~TIHn~~~qg~~p~~~l~~~gl-p~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G 513 (632)
..++|+|+++|+...+ . +...+. ....+. ++ ...+++..++.||.|+++|+..++.+.+ .|
T Consensus 129 -~~~~~~v~~~~d~~~~-----~-~~~~~~~~~~~~~--~~-------~~~~~~~~~~~ad~ii~~S~~~~~~~~~--~~ 190 (412)
T PRK10307 129 -LSGARTWLHIQDYEVD-----A-AFGLGLLKGGKVA--RL-------ATAFERSLLRRFDNVSTISRSMMNKARE--KG 190 (412)
T ss_pred -hhCCCEEEEeccCCHH-----H-HHHhCCccCcHHH--HH-------HHHHHHHHHhhCCEEEecCHHHHHHHHH--cC
Confidence 2578999999985321 0 000111 011100 00 1235677889999999999999988764 22
Q ss_pred CccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCc
Q 006770 514 WGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLD 593 (632)
Q Consensus 514 ~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~ 593 (632)
+ +..++.+||||||.+.|.|... ..+..+++++|++ ++.++|+|+||+.
T Consensus 191 --~------~~~~i~vi~ngvd~~~~~~~~~---------------------~~~~~~~~~~~~~--~~~~~i~~~G~l~ 239 (412)
T PRK10307 191 --V------AAEKVIFFPNWSEVARFQPVAD---------------------ADVDALRAQLGLP--DGKKIVLYSGNIG 239 (412)
T ss_pred --C------CcccEEEECCCcCHhhcCCCCc---------------------cchHHHHHHcCCC--CCCEEEEEcCccc
Confidence 1 5678999999999988876411 0123467888987 3678999999999
Q ss_pred cccCHHHHHHHHhhccCC-CcEEEEEecCh--hhHHHHHHh
Q 006770 594 HQKGVDLIAEAIPWMMGQ-DVQLSHVGHWQ--TRFGRDAEE 631 (632)
Q Consensus 594 ~qKGvdlLLeA~~~L~~~-dvqLVI~G~G~--~~le~~lke 631 (632)
++||++.|++|++.+.+. +++|+|+|+|+ ..+++.+++
T Consensus 240 ~~kg~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~ 280 (412)
T PRK10307 240 EKQGLELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQC 280 (412)
T ss_pred cccCHHHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHH
Confidence 999999999999988553 79999999997 355555553
No 13
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.87 E-value=5.6e-21 Score=205.75 Aligned_cols=250 Identities=18% Similarity=0.221 Sum_probs=161.7
Q ss_pred EEEEecccCCCC-----CCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECC
Q 006770 280 VILVAAECGPWS-----KTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDG 354 (632)
Q Consensus 280 IL~It~e~~P~~-----~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dG 354 (632)
|++++....|+. ..||+++++.+|+++|+++||+|+|+|+..+..... . ....+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~--~------------------~~~~~~ 60 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATRPSQPP--V------------------VEVAPG 60 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccCCCCCC--c------------------cccCCC
Confidence 577888777762 269999999999999999999999999764321110 0 012467
Q ss_pred eEEEEecCccccccCCCCCCCChhhHHHHHHHHHHHHH-HhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhc
Q 006770 355 VDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAI-EIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDN 433 (632)
Q Consensus 355 V~v~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~-e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~ 433 (632)
+.++.+....+.. .. .......+..|....+ .++++. ..+|||||+|+|.+++++.+++.
T Consensus 61 ~~v~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~-------~~~~Diih~h~~~~~~~~~~~~~----- 121 (405)
T TIGR03449 61 VRVRNVVAGPYEG-----LD--KEDLPTQLCAFTGGVLRAEARHE-------PGYYDLIHSHYWLSGQVGWLLRD----- 121 (405)
T ss_pred cEEEEecCCCccc-----CC--HHHHHHHHHHHHHHHHHHHhhcc-------CCCCCeEEechHHHHHHHHHHHH-----
Confidence 7777664432211 00 0011111112222222 333322 25799999999887766655543
Q ss_pred CCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcC
Q 006770 434 GLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGG 513 (632)
Q Consensus 434 ~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G 513 (632)
..++|+|+|+|+...... ..+.....+... . ....++..++.+|.|+++|+...+++... +|
T Consensus 122 --~~~~p~v~t~h~~~~~~~---~~~~~~~~~~~~------~------~~~~e~~~~~~~d~vi~~s~~~~~~~~~~-~~ 183 (405)
T TIGR03449 122 --RWGVPLVHTAHTLAAVKN---AALADGDTPEPE------A------RRIGEQQLVDNADRLIANTDEEARDLVRH-YD 183 (405)
T ss_pred --hcCCCEEEeccchHHHHH---HhccCCCCCchH------H------HHHHHHHHHHhcCeEEECCHHHHHHHHHH-cC
Confidence 257899999998531100 000000000000 0 12234567789999999999888877652 22
Q ss_pred CccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCc
Q 006770 514 WGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLD 593 (632)
Q Consensus 514 ~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~ 593 (632)
. +..++.+|+||||.+.|.|.. +...+++++++ ++.++|+|+||+.
T Consensus 184 --~------~~~ki~vi~ngvd~~~~~~~~------------------------~~~~~~~~~~~--~~~~~i~~~G~l~ 229 (405)
T TIGR03449 184 --A------DPDRIDVVAPGADLERFRPGD------------------------RATERARLGLP--LDTKVVAFVGRIQ 229 (405)
T ss_pred --C------ChhhEEEECCCcCHHHcCCCc------------------------HHHHHHhcCCC--CCCcEEEEecCCC
Confidence 1 467899999999998886531 22356778886 3678999999999
Q ss_pred cccCHHHHHHHHhhccCC--C--cEEEEEec
Q 006770 594 HQKGVDLIAEAIPWMMGQ--D--VQLSHVGH 620 (632)
Q Consensus 594 ~qKGvdlLLeA~~~L~~~--d--vqLVI~G~ 620 (632)
++||++.|++|++.+.+. + ++|+|+|.
T Consensus 230 ~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~ 260 (405)
T TIGR03449 230 PLKAPDVLLRAVAELLDRDPDRNLRVIVVGG 260 (405)
T ss_pred cccCHHHHHHHHHHHHhhCCCcceEEEEEeC
Confidence 999999999999988652 3 99999996
No 14
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.87 E-value=1.4e-20 Score=200.37 Aligned_cols=239 Identities=23% Similarity=0.227 Sum_probs=156.2
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEE
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDF 357 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v 357 (632)
|||++|+..|+|. ..||+++++.+|+++|.++ |+|.|++...+.. ..+|+++
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~--------------------------~~~~~~~ 52 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGDQRF--------------------------DSEGLTV 52 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh--------------------------cCCCeEE
Confidence 8999999998885 4699999999999999987 7888887532210 1234444
Q ss_pred EEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCC
Q 006770 358 VFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQ 437 (632)
Q Consensus 358 ~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~ 437 (632)
+.+..+... .. ....+.. +...+ .+... ..++||||+|+|.+++++..++. ..
T Consensus 53 ~~~~~~~~~------~~--~~~~~~~---~~~~~-~~~~~--------~~~~divh~~~~~~~~~~~~~~~-------~~ 105 (388)
T TIGR02149 53 KGYRPWSEL------KE--ANKALGT---FSVDL-AMAND--------PVDADVVHSHTWYTFLAGHLAKK-------LY 105 (388)
T ss_pred EEecChhhc------cc--hhhhhhh---hhHHH-HHhhC--------CCCCCeEeecchhhhhHHHHHHH-------hc
Confidence 433221100 00 0000111 11111 11111 24799999999887766554332 35
Q ss_pred CCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccc
Q 006770 438 YTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLH 517 (632)
Q Consensus 438 ~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~ 517 (632)
++|+|+|+|+......+..... +.. +.+ ...+++..++.||.|+++|+.+++.+.....+.
T Consensus 106 ~~p~v~~~h~~~~~~~~~~~~~---~~~------~~~-------~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~--- 166 (388)
T TIGR02149 106 DKPLVVTAHSLEPLRPWKEEQL---GGG------YKL-------SSWAEKTAIEAADRVIAVSGGMREDILKYYPDL--- 166 (388)
T ss_pred CCCEEEEeeccccccccccccc---ccc------hhH-------HHHHHHHHHhhCCEEEEccHHHHHHHHHHcCCC---
Confidence 8899999999632111100000 000 000 123456778899999999999988877532121
Q ss_pred cccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccC
Q 006770 518 NIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKG 597 (632)
Q Consensus 518 ~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKG 597 (632)
...++.+|+||+|.+.|.|.. +..+++++|++ ++.++|+|+||+.++||
T Consensus 167 -----~~~~i~vi~ng~~~~~~~~~~------------------------~~~~~~~~~~~--~~~~~i~~~Grl~~~Kg 215 (388)
T TIGR02149 167 -----DPEKVHVIYNGIDTKEYKPDD------------------------GNVVLDRYGID--RSRPYILFVGRITRQKG 215 (388)
T ss_pred -----CcceEEEecCCCChhhcCCCc------------------------hHHHHHHhCCC--CCceEEEEEcccccccC
Confidence 457899999999998886531 23467788886 36789999999999999
Q ss_pred HHHHHHHHhhccCCCcEEEEEecCh
Q 006770 598 VDLIAEAIPWMMGQDVQLSHVGHWQ 622 (632)
Q Consensus 598 vdlLLeA~~~L~~~dvqLVI~G~G~ 622 (632)
++.|++|++.+. .+++|+++|.|+
T Consensus 216 ~~~li~a~~~l~-~~~~l~i~g~g~ 239 (388)
T TIGR02149 216 VPHLLDAVHYIP-KDVQVVLCAGAP 239 (388)
T ss_pred HHHHHHHHHHHh-hcCcEEEEeCCC
Confidence 999999999874 578999998765
No 15
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.87 E-value=2.7e-20 Score=204.68 Aligned_cols=262 Identities=17% Similarity=0.121 Sum_probs=154.8
Q ss_pred CCCcHHHHHHHHHHHHHHCCC--eEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEEEecCccccccC
Q 006770 292 KTGGLGDVAGALPKALARRGH--RVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLG 369 (632)
Q Consensus 292 ~~GGlg~~v~~LakaLakrGh--eV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~~I~~p~~~~~~ 369 (632)
.+||+++++.+|+++|+++|| +|+|+|..++...-..+ ... .+....+|++++.++....
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~--~~~------------~~~~~~~gv~v~r~~~~~~---- 85 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPD--YAQ------------PIERIAPGARIVRLPFGPR---- 85 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCc--cCC------------CeeEeCCCcEEEEecCCCC----
Confidence 589999999999999999997 99999976432100000 000 0123457899888754211
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCc
Q 006770 370 NNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIA 449 (632)
Q Consensus 370 ~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~ 449 (632)
.|.. ..+....+..|...+.+++++. ..+|||||+|+|++++++.+++. ..++|+|+|+|+..
T Consensus 86 --~~~~-~~~~~~~~~~~~~~l~~~~~~~-------~~~~DvIH~h~~~~~~~~~~~~~-------~~~~p~V~t~H~~~ 148 (439)
T TIGR02472 86 --RYLR-KELLWPYLDELADNLLQHLRQQ-------GHLPDLIHAHYADAGYVGARLSR-------LLGVPLIFTGHSLG 148 (439)
T ss_pred --CCcC-hhhhhhhHHHHHHHHHHHHHHc-------CCCCCEEEEcchhHHHHHHHHHH-------HhCCCEEEeccccc
Confidence 1110 0111112233445555656532 24799999999888777665543 24789999999853
Q ss_pred ccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEE
Q 006770 450 HQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSG 529 (632)
Q Consensus 450 ~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~v 529 (632)
... ...+...+.....+. +.|. ....+..++..++.||+||++|+....+......+ .++.|+.+
T Consensus 149 ~~~---~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~--------~~~~ki~v 213 (439)
T TIGR02472 149 REK---RRRLLAAGLKPQQIE--KQYN--ISRRIEAEEETLAHASLVITSTHQEIEEQYALYDS--------YQPERMQV 213 (439)
T ss_pred chh---hhhcccCCCChhhhh--hhcc--hHHHHHHHHHHHHhCCEEEECCHHHHHHHHHhccC--------CCccceEE
Confidence 210 000111111110000 0010 01123456778899999999997655443321112 15789999
Q ss_pred eeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcc
Q 006770 530 IVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMM 609 (632)
Q Consensus 530 IpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~ 609 (632)
||||||.+.|.|.... ......+..+ ++++.+ ++.++|+|+|||.++||++.|++|++.+.
T Consensus 214 IpnGvd~~~f~~~~~~----------------~~~~~~~~~~-~~~~~~--~~~~~i~~vGrl~~~Kg~~~li~A~~~l~ 274 (439)
T TIGR02472 214 IPPGVDLSRFYPPQSS----------------EETSEIDNLL-APFLKD--PEKPPILAISRPDRRKNIPSLVEAYGRSP 274 (439)
T ss_pred ECCCcChhhcCCCCcc----------------ccchhHHHHH-Hhhccc--cCCcEEEEEcCCcccCCHHHHHHHHHhCh
Confidence 9999999999874210 0011122223 334443 36789999999999999999999998642
Q ss_pred --CCCcEEE-EEecCh
Q 006770 610 --GQDVQLS-HVGHWQ 622 (632)
Q Consensus 610 --~~dvqLV-I~G~G~ 622 (632)
..+.+++ |+|+|+
T Consensus 275 ~~~~~~~l~li~G~g~ 290 (439)
T TIGR02472 275 KLQEMANLVLVLGCRD 290 (439)
T ss_pred hhhhhccEEEEeCCcc
Confidence 2234443 678876
No 16
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.86 E-value=2.8e-20 Score=201.18 Aligned_cols=240 Identities=20% Similarity=0.220 Sum_probs=155.2
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++++..|.|. .||+++++..|+++|+++||+|.|+|+.++..... ....+|++++
T Consensus 1 kI~~v~~~~~p~--~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~---------------------~~~~~~i~v~ 57 (398)
T cd03796 1 RICMVSDFFYPN--LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGI---------------------RYLTNGLKVY 57 (398)
T ss_pred CeeEEeeccccc--cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCc---------------------ccccCceeEE
Confidence 799999999995 79999999999999999999999999865421100 0123566776
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~ 438 (632)
.++...... ..... .+..+...+.+.+. ..+|||||+|++...+....+.. .+ ..+
T Consensus 58 ~~p~~~~~~--~~~~~--------~~~~~~~~l~~~~~---------~~~~DiIh~~~~~~~~~~~~~~~-~~----~~~ 113 (398)
T cd03796 58 YLPFVVFYN--QSTLP--------TFFGTFPLLRNILI---------RERITIVHGHQAFSALAHEALLH-AR----TMG 113 (398)
T ss_pred EecceeccC--Ccccc--------chhhhHHHHHHHHH---------hcCCCEEEECCCCchHHHHHHHH-hh----hcC
Confidence 664322110 00110 01111112223333 35899999998765433211111 11 357
Q ss_pred CeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcccc
Q 006770 439 TRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHN 518 (632)
Q Consensus 439 iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~ 518 (632)
+|+|+|.|+.. +.... ... + ...+++..++.+|.|+++|+...+.+... .+
T Consensus 114 ~~~v~t~h~~~-----~~~~~-----~~~------~-------~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~----- 164 (398)
T cd03796 114 LKTVFTDHSLF-----GFADA-----SSI------H-------TNKLLRFSLADVDHVICVSHTSKENTVLR-AS----- 164 (398)
T ss_pred CcEEEEecccc-----cccch-----hhH------H-------hhHHHHHhhccCCEEEEecHhHhhHHHHH-hC-----
Confidence 89999999841 11000 000 0 01234566789999999999887654321 12
Q ss_pred ccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCH
Q 006770 519 IINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGV 598 (632)
Q Consensus 519 il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGv 598 (632)
.+..++.+||||+|.+.|.|... + . .++.++|+|+||+.++||+
T Consensus 165 ---~~~~k~~vi~ngvd~~~f~~~~~-------------------~------------~--~~~~~~i~~~grl~~~Kg~ 208 (398)
T cd03796 165 ---LDPERVSVIPNAVDSSDFTPDPS-------------------K------------R--DNDKITIVVISRLVYRKGI 208 (398)
T ss_pred ---CChhhEEEEcCccCHHHcCCCcc-------------------c------------C--CCCceEEEEEeccchhcCH
Confidence 15678999999999988876421 0 0 1357899999999999999
Q ss_pred HHHHHHHhhccC--CCcEEEEEecCh--hhHHHHHH
Q 006770 599 DLIAEAIPWMMG--QDVQLSHVGHWQ--TRFGRDAE 630 (632)
Q Consensus 599 dlLLeA~~~L~~--~dvqLVI~G~G~--~~le~~lk 630 (632)
+.|++|++.+.+ .+++|+|+|+|+ ..+++.++
T Consensus 209 ~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~ 244 (398)
T cd03796 209 DLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMRE 244 (398)
T ss_pred HHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHH
Confidence 999999998864 489999999997 34444444
No 17
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.85 E-value=1.5e-19 Score=200.18 Aligned_cols=244 Identities=16% Similarity=0.195 Sum_probs=150.5
Q ss_pred CCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECC
Q 006770 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDG 354 (632)
Q Consensus 275 ~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dG 354 (632)
..+|||++++. ..|+...||++.++.+|+++|.++||+|+|+|+..+. ... ..|
T Consensus 56 ~~~mrI~~~~~-~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~-~~~------------------------~~g 109 (465)
T PLN02871 56 SRPRRIALFVE-PSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGV-PQE------------------------FHG 109 (465)
T ss_pred CCCceEEEEEC-CcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCC-Ccc------------------------ccC
Confidence 56799999975 3444568999999999999999999999999975432 110 112
Q ss_pred eEEEEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhH-HHHHHHHHhhhc
Q 006770 355 VDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTAL-LPVYLKAYYRDN 433 (632)
Q Consensus 355 V~v~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sal-lp~~l~~~~~~~ 433 (632)
+.++.+..... ..|... ...+. +...+.++++ ..+|||||+|+..... .+.++..
T Consensus 110 ~~v~~~~~~~~-----~~~~~~----~~~~~-~~~~l~~~i~---------~~kpDiIh~~~~~~~~~~~~~~ak----- 165 (465)
T PLN02871 110 AKVIGSWSFPC-----PFYQKV----PLSLA-LSPRIISEVA---------RFKPDLIHASSPGIMVFGALFYAK----- 165 (465)
T ss_pred ceeeccCCcCC-----ccCCCc----eeecc-CCHHHHHHHH---------hCCCCEEEECCCchhHHHHHHHHH-----
Confidence 22211110000 001000 00000 0011223344 2579999999753222 2222221
Q ss_pred CCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcC
Q 006770 434 GLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGG 513 (632)
Q Consensus 434 ~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G 513 (632)
..++|+|+|+|+.... ..+. ..... ... ....+++..++.+|.|+++|+..++.+.+. +
T Consensus 166 --~~~ip~V~~~h~~~~~-~~~~-----~~~~~-~~~----------~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~--~ 224 (465)
T PLN02871 166 --LLCVPLVMSYHTHVPV-YIPR-----YTFSW-LVK----------PMWDIIRFLHRAADLTLVTSPALGKELEAA--G 224 (465)
T ss_pred --HhCCCEEEEEecCchh-hhhc-----ccchh-hHH----------HHHHHHHHHHhhCCEEEECCHHHHHHHHHc--C
Confidence 2578999999984211 0000 00000 000 012345667789999999999999888752 2
Q ss_pred CccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCc
Q 006770 514 WGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLD 593 (632)
Q Consensus 514 ~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~ 593 (632)
+ .+..++.+|+||||.+.|.|... +..+++++... .++.++|+|+||+.
T Consensus 225 ~-------~~~~kv~vi~nGvd~~~f~p~~~-----------------------~~~~~~~~~~~-~~~~~~i~~vGrl~ 273 (465)
T PLN02871 225 V-------TAANRIRVWNKGVDSESFHPRFR-----------------------SEEMRARLSGG-EPEKPLIVYVGRLG 273 (465)
T ss_pred C-------CCcCeEEEeCCccCccccCCccc-----------------------cHHHHHHhcCC-CCCCeEEEEeCCCc
Confidence 1 14578999999999999977421 01234444322 13678999999999
Q ss_pred cccCHHHHHHHHhhccCCCcEEEEEecCh
Q 006770 594 HQKGVDLIAEAIPWMMGQDVQLSHVGHWQ 622 (632)
Q Consensus 594 ~qKGvdlLLeA~~~L~~~dvqLVI~G~G~ 622 (632)
++||++.|+++++.+ .+++|+|+|+|+
T Consensus 274 ~~K~~~~li~a~~~~--~~~~l~ivG~G~ 300 (465)
T PLN02871 274 AEKNLDFLKRVMERL--PGARLAFVGDGP 300 (465)
T ss_pred hhhhHHHHHHHHHhC--CCcEEEEEeCCh
Confidence 999999999999886 389999999997
No 18
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.84 E-value=2.7e-19 Score=188.62 Aligned_cols=236 Identities=20% Similarity=0.187 Sum_probs=151.5
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEE
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDF 357 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v 357 (632)
|||++++ +| ..||++.++.+|+++|+++||+|+|+|...+..... ...++.+
T Consensus 1 mki~~~~---~p--~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~-----------------------~~~~~~~ 52 (371)
T cd04962 1 MKIGIVC---YP--TYGGSGVVATELGKALARRGHEVHFITSSRPFRLDE-----------------------YSPNIFF 52 (371)
T ss_pred CceeEEE---Ee--CCCCccchHHHHHHHHHhcCCceEEEecCCCcchhh-----------------------hccCeEE
Confidence 8999997 35 369999999999999999999999998653211000 0112222
Q ss_pred EEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCC
Q 006770 358 VFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQ 437 (632)
Q Consensus 358 ~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~ 437 (632)
+.++.+.+.......| .....+.+.+.++ ..+|||||+|.+.....+.++..... ...
T Consensus 53 ~~~~~~~~~~~~~~~~----------~~~~~~~l~~~i~---------~~~~divh~~~~~~~~~~~~~~~~~~---~~~ 110 (371)
T cd04962 53 HEVEVPQYPLFQYPPY----------DLALASKIAEVAK---------RYKLDLLHVHYAVPHAVAAYLAREIL---GKK 110 (371)
T ss_pred EEecccccchhhcchh----------HHHHHHHHHHHHh---------cCCccEEeecccCCccHHHHHHHHhc---CcC
Confidence 2221111100000011 0112233444444 35899999997654433333332211 013
Q ss_pred CCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccc
Q 006770 438 YTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLH 517 (632)
Q Consensus 438 ~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~ 517 (632)
++|+|+|+|+....- .+.... ...+.+..++.+|+|+++|+..++.+.+. ++
T Consensus 111 ~~~~i~~~h~~~~~~---------~~~~~~--------------~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~---- 162 (371)
T cd04962 111 DLPVVTTLHGTDITL---------VGQDPS--------------FQPATRFSIEKSDGVTAVSESLRQETYEL-FD---- 162 (371)
T ss_pred CCcEEEEEcCCcccc---------cccccc--------------chHHHHHHHhhCCEEEEcCHHHHHHHHHh-cC----
Confidence 799999999853210 000000 12345677889999999999988777642 11
Q ss_pred cccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccC
Q 006770 518 NIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKG 597 (632)
Q Consensus 518 ~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKG 597 (632)
...++.+|+||+|...|.+.. +...+++++++ ++.++|+|+||+.++||
T Consensus 163 -----~~~~i~vi~n~~~~~~~~~~~------------------------~~~~~~~~~~~--~~~~~il~~g~l~~~K~ 211 (371)
T cd04962 163 -----ITKEIEVIPNFVDEDRFRPKP------------------------DEALKRRLGAP--EGEKVLIHISNFRPVKR 211 (371)
T ss_pred -----CcCCEEEecCCcCHhhcCCCc------------------------hHHHHHhcCCC--CCCeEEEEecccccccC
Confidence 356899999999987775531 12245677776 36789999999999999
Q ss_pred HHHHHHHHhhccCC-CcEEEEEecCh
Q 006770 598 VDLIAEAIPWMMGQ-DVQLSHVGHWQ 622 (632)
Q Consensus 598 vdlLLeA~~~L~~~-dvqLVI~G~G~ 622 (632)
++.|++|+..+.+. +++|+|+|+|+
T Consensus 212 ~~~li~a~~~l~~~~~~~l~i~G~g~ 237 (371)
T cd04962 212 IDDVIRIFAKVRKEVPARLLLVGDGP 237 (371)
T ss_pred HHHHHHHHHHHHhcCCceEEEEcCCc
Confidence 99999999988754 89999999996
No 19
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.83 E-value=1.2e-18 Score=201.82 Aligned_cols=300 Identities=17% Similarity=0.097 Sum_probs=172.7
Q ss_pred CcEEEEEecccC----CC---CCCCcHHHHHHHHHHHH--------HHCCC----eEEEEccCCCCCCCCCCcccceeee
Q 006770 277 VMNVILVAAECG----PW---SKTGGLGDVAGALPKAL--------ARRGH----RVMVVAPHYGNYAEPQDTGIRKRYR 337 (632)
Q Consensus 277 ~MKIL~It~e~~----P~---~~~GGlg~~v~~LakaL--------akrGh----eV~VVtP~y~~~~~~~dig~r~~~~ 337 (632)
.|||+||+.+.+ |- ..+||..+||.+|+++| +++|| +|.|+|...+.... .+-..+ .
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~-~~~~~~--~- 330 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEG-TTCNQR--L- 330 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccc-cccccc--c-
Confidence 389999999972 21 24799999999999985 68999 78899976542111 000000 0
Q ss_pred ecCccceEEEEEEEECCeEEEEecCccccc--cCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEc
Q 006770 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRH--LGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIAN 415 (632)
Q Consensus 338 i~g~~~~v~v~~~~~dGV~v~~I~~p~~~~--~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaH 415 (632)
. .....+|+.++.++...... .+ -|- .+.+.+..+..|+..+.+.+.... ..+||+||+|
T Consensus 331 --------e-~~~~~~~~~I~rvp~g~~~~~~~~--~~i-~k~~l~p~l~~f~~~~~~~~~~~~------~~~pDlIHah 392 (784)
T TIGR02470 331 --------E-KVYGTEHAWILRVPFRTENGIILR--NWI-SRFEIWPYLETFAEDAEKEILAEL------QGKPDLIIGN 392 (784)
T ss_pred --------c-cccCCCceEEEEecCCCCcccccc--ccc-CHHHHHHHHHHHHHHHHHHHHHhc------CCCCCEEEEC
Confidence 0 00123577777665322100 00 011 012333344456666665443211 2479999999
Q ss_pred CcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCe
Q 006770 416 DWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADR 495 (632)
Q Consensus 416 dw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~ 495 (632)
.|.+++++..++. ..++|.|+|.|.+..... + ..+..+.-.. ..|. ....+..+..++..||+
T Consensus 393 y~d~glva~lla~-------~lgVP~v~t~HsL~~~K~-~-----~~g~~~~~~e--~~~~--~~~r~~ae~~~~~~AD~ 455 (784)
T TIGR02470 393 YSDGNLVASLLAR-------KLGVTQCTIAHALEKTKY-P-----DSDIYWQEFE--DKYH--FSCQFTADLIAMNAADF 455 (784)
T ss_pred CCchHHHHHHHHH-------hcCCCEEEECCcchhhcc-c-----ccccccccch--hHHH--hhhhhhHHHHHHhcCCE
Confidence 9999999877654 258999999998743211 0 1111100000 0000 00012224577889999
Q ss_pred EEEechhHHHHH---HHhh-----cCC-ccccc---cccCCCcEEEeeCCCcCCCCCCccccccccCCCccc--cccccc
Q 006770 496 VVTVSRGYSWEL---KTAE-----GGW-GLHNI---INEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNY--CLDTLH 561 (632)
Q Consensus 496 VItVS~~~a~el---~~~~-----~G~-gL~~i---l~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~--s~ed~~ 561 (632)
|||.|....... ..++ +.. +|.++ +..++.|+.+|++|+|.+.|.|.....-. .... ..+++
T Consensus 456 IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r---~~~~~~~ie~l- 531 (784)
T TIGR02470 456 IITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKR---LTNLHPEIEEL- 531 (784)
T ss_pred EEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhh---hhhhhcchhhh-
Confidence 999996432211 1110 000 11111 12256799999999999999874321000 0000 00000
Q ss_pred CCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcc--CCCcEEEEEecCh
Q 006770 562 TGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMM--GQDVQLSHVGHWQ 622 (632)
Q Consensus 562 ~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~--~~dvqLVI~G~G~ 622 (632)
--++...++.+|+..++++|+|+++|||+++||++.|++|+..+. ..+++|||+|.|+
T Consensus 532 ---l~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~ 591 (784)
T TIGR02470 532 ---LFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKL 591 (784)
T ss_pred ---ccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCc
Confidence 002334567888765678899999999999999999999998764 3479999999874
No 20
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.82 E-value=1.6e-18 Score=204.62 Aligned_cols=310 Identities=14% Similarity=0.100 Sum_probs=173.2
Q ss_pred CCcEEEEEecccCC---------CCCCCcHHHHHHHHHHHHHHCC--CeEEEEccCCCCC------CCCCCcccceeeee
Q 006770 276 NVMNVILVAAECGP---------WSKTGGLGDVAGALPKALARRG--HRVMVVAPHYGNY------AEPQDTGIRKRYRV 338 (632)
Q Consensus 276 ~~MKIL~It~e~~P---------~~~~GGlg~~v~~LakaLakrG--heV~VVtP~y~~~------~~~~dig~r~~~~i 338 (632)
..|.|+||+.+-.| -..+||..+||.+|+++|+++| |+|.|+|...... .++.+. +. ...-
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~-~~-~~~~ 245 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEM-LT-PRSS 245 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccc-cc-cccc
Confidence 45899999877442 1468999999999999999998 8999999654320 011000 00 0000
Q ss_pred cCccceEEEEEEEECCeEEEEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhh--------cCCCCCCCCCCcc
Q 006770 339 DRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWY--------VPCGGVCYGDGNL 410 (632)
Q Consensus 339 ~g~~~~v~v~~~~~dGV~v~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~--------l~~~~~~~~~~pD 410 (632)
++... ......|+.++.|+..... -|-. ..+.+..+.-|...++..+.+ +.++ ....||
T Consensus 246 ~~~~~----~~~~~~g~rIvRip~GP~~-----~~l~-Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~---~~~~pD 312 (1050)
T TIGR02468 246 ENDGD----EMGESSGAYIIRIPFGPRD-----KYIP-KEELWPYIPEFVDGALSHIVNMSKVLGEQIGSG---HPVWPY 312 (1050)
T ss_pred ccccc----cccCCCCeEEEEeccCCCC-----CCcC-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---cCCCCC
Confidence 00000 0123468998888753210 1111 112233334455555544332 1000 012499
Q ss_pred EEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCC-CccccccccccCCCCchhHHHHHHH
Q 006770 411 VFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDL-PGHYLDLFKLYDPVGGEHFNIFAAG 489 (632)
Q Consensus 411 IIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~gl-p~~~~~~l~~~~p~~g~~~~i~r~~ 489 (632)
|||+|+|.++.++..++. ..++|+|+|.|.+.-.. ...+..-|. +..-++ ..|. ....+..++.+
T Consensus 313 vIHaHyw~sG~aa~~L~~-------~lgVP~V~T~HSLgr~K---~~~ll~~g~~~~~~~~--~~y~--~~~Ri~~Ee~~ 378 (1050)
T TIGR02468 313 VIHGHYADAGDSAALLSG-------ALNVPMVLTGHSLGRDK---LEQLLKQGRMSKEEIN--STYK--IMRRIEAEELS 378 (1050)
T ss_pred EEEECcchHHHHHHHHHH-------hhCCCEEEECccchhhh---hhhhcccccccccccc--cccc--hHHHHHHHHHH
Confidence 999999999999887765 35899999999862110 000000010 000000 0000 01235567889
Q ss_pred hhcCCeEEEechhHHHHHHHhhcCCc--cccccc-----------cCCCcEEEeeCCCcCCCCCCccccccccCCCcccc
Q 006770 490 LKTADRVVTVSRGYSWELKTAEGGWG--LHNIIN-----------EVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYC 556 (632)
Q Consensus 490 l~~AD~VItVS~~~a~el~~~~~G~g--L~~il~-----------~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s 556 (632)
+..||+|||+|+..++++...+.++. |...|+ ....++.|||||||.+.|.|..... .. ....
T Consensus 379 l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~-~~---~~~~ 454 (1050)
T TIGR02468 379 LDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDM-DG---ETEG 454 (1050)
T ss_pred HHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccc-cc---hhcc
Confidence 99999999999999887765321111 000000 0134999999999999999852110 00 0000
Q ss_pred cccc-cCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC----CCcEEEEEecCh
Q 006770 557 LDTL-HTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG----QDVQLSHVGHWQ 622 (632)
Q Consensus 557 ~ed~-~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~----~dvqLVI~G~G~ 622 (632)
.++. ....+.....+++.+ .. ++.|+|+|+||++++||++.||+|+..+.. .++. +|+|.|+
T Consensus 455 ~~~~~~~~~~~~~~~l~r~~-~~--pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gd 521 (1050)
T TIGR02468 455 NEEHPAKPDPPIWSEIMRFF-TN--PRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRD 521 (1050)
T ss_pred cccccccccchhhHHHHhhc-cc--CCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCc
Confidence 0000 000011122334333 33 478999999999999999999999998863 2555 5678765
No 21
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.79 E-value=3.4e-18 Score=189.11 Aligned_cols=268 Identities=13% Similarity=0.087 Sum_probs=146.2
Q ss_pred CCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCC-CeEEEEccCCCCCCCCCCc-ccceeeeecC-ccceEEEEEEEE
Q 006770 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRG-HRVMVVAPHYGNYAEPQDT-GIRKRYRVDR-QDIEVAYFQAYI 352 (632)
Q Consensus 276 ~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrG-heV~VVtP~y~~~~~~~di-g~r~~~~i~g-~~~~v~v~~~~~ 352 (632)
+.|||+++|..|.|| ++|+.+.+..++..|+++| |+|+||+|+++...+. .+ +....|.-+. ++..++ ..
T Consensus 3 ~~mrIaivTdt~lP~--vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~-~~~~~~~~f~~~~~~e~~~~----~~ 75 (462)
T PLN02846 3 KKQHIAIFTTASLPW--MTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQK-LVYPNKITFSSPSEQEAYVR----QW 75 (462)
T ss_pred CCCEEEEEEcCCCCC--CCCeeccHHHHHHHHHhcCCcEEEEEecCCcccccc-ccccccccccCchhhhhhhh----hh
Confidence 469999999999997 7999999999999999999 7999999988642110 00 0000000000 000000 00
Q ss_pred CCeEEEEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcch-hHHHHHHHHHhh
Q 006770 353 DGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHT-ALLPVYLKAYYR 431 (632)
Q Consensus 353 dGV~v~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~s-allp~~l~~~~~ 431 (632)
.+-.+++++...+. .|.. +.-...++......+.+.++ .++|||||+|+... +.+.. .+.+.+
T Consensus 76 ~~~~v~r~~s~~~p-----~yp~-r~~~~~r~~~~~~~i~~~l~---------~~~pDVIHv~tP~~LG~~~~-g~~~~~ 139 (462)
T PLN02846 76 LEERISFLPKFSIK-----FYPG-KFSTDKRSILPVGDISETIP---------DEEADIAVLEEPEHLTWYHH-GKRWKT 139 (462)
T ss_pred ccCeEEEecccccc-----cCcc-cccccccccCChHHHHHHHH---------hcCCCEEEEcCchhhhhHHH-HHHHHh
Confidence 11223333322111 1221 00000111122233444444 36899999997432 32200 111111
Q ss_pred hcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHH-HHHHh-hcCCeEEEechhHHHHHHH
Q 006770 432 DNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNI-FAAGL-KTADRVVTVSRGYSWELKT 509 (632)
Q Consensus 432 ~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i-~r~~l-~~AD~VItVS~~~a~el~~ 509 (632)
+..++|.|+|+. +... +.+.+.. ... .+ .... .++.. .++|.|+++|.... ++..
T Consensus 140 -----k~~~vV~tyHT~-y~~Y-----~~~~~~g--~~~--~~-------l~~~~~~~~~r~~~d~vi~pS~~~~-~l~~ 196 (462)
T PLN02846 140 -----KFRLVIGIVHTN-YLEY-----VKREKNG--RVK--AF-------LLKYINSWVVDIYCHKVIRLSAATQ-DYPR 196 (462)
T ss_pred -----cCCcEEEEECCC-hHHH-----HHHhccc--hHH--HH-------HHHHHHHHHHHHhcCEEEccCHHHH-HHhh
Confidence 123488899993 2111 1110100 000 00 0111 11221 24899999997544 3432
Q ss_pred hhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEE
Q 006770 510 AEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFI 589 (632)
Q Consensus 510 ~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfV 589 (632)
.....+||||.+.|.|... . +++.++ +.+.-.++++|+
T Consensus 197 ----------------~~i~~v~GVd~~~f~~~~~---------------------~----~~~~~~-~~~~~~~~~l~v 234 (462)
T PLN02846 197 ----------------SIICNVHGVNPKFLEIGKL---------------------K----LEQQKN-GEQAFTKGAYYI 234 (462)
T ss_pred ----------------CEEecCceechhhcCCCcc---------------------c----HhhhcC-CCCCcceEEEEE
Confidence 1333458999998877421 0 122222 211124579999
Q ss_pred cCCccccCHHHHHHHHhhccC--CCcEEEEEecChh--hHHHHHHh
Q 006770 590 GRLDHQKGVDLIAEAIPWMMG--QDVQLSHVGHWQT--RFGRDAEE 631 (632)
Q Consensus 590 GRL~~qKGvdlLLeA~~~L~~--~dvqLVI~G~G~~--~le~~lke 631 (632)
|||.++||++.||+|++.+.+ .+++|+|+|+|+. ++++.+++
T Consensus 235 GRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~ 280 (462)
T PLN02846 235 GKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEK 280 (462)
T ss_pred ecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHh
Confidence 999999999999999998865 4899999999984 67777664
No 22
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.79 E-value=4.4e-19 Score=185.49 Aligned_cols=243 Identities=22% Similarity=0.305 Sum_probs=163.2
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEE
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDF 357 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v 357 (632)
++|+|+++.|+|. .||++.+++.|++.|.++||.|.|+|-.|++. .|+| ...+|.+|
T Consensus 1 ~~i~mVsdff~P~--~ggveshiy~lSq~li~lghkVvvithayg~r-----~gir----------------ylt~glkV 57 (426)
T KOG1111|consen 1 SRILMVSDFFYPS--TGGVESHIYALSQCLIRLGHKVVVITHAYGNR-----VGIR----------------YLTNGLKV 57 (426)
T ss_pred CcceeeCcccccC--CCChhhhHHHhhcchhhcCCeEEEEeccccCc-----ccee----------------eecCCceE
Confidence 5899999999994 89999999999999999999999999988863 2222 23467888
Q ss_pred EEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCC
Q 006770 358 VFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQ 437 (632)
Q Consensus 358 ~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~ 437 (632)
|+++....+. +..++. .+..+.++.. .++ .++..|||.|..+++++=-.+.. + ..-
T Consensus 58 yylp~~v~~n--~tT~pt----v~~~~Pllr~---i~l----------rE~I~ivhghs~fS~lahe~l~h-a----rtM 113 (426)
T KOG1111|consen 58 YYLPAVVGYN--QTTFPT----VFSDFPLLRP---ILL----------RERIEIVHGHSPFSYLAHEALMH-A----RTM 113 (426)
T ss_pred EEEeeeeeec--ccchhh----hhccCcccch---hhh----------hhceEEEecCChHHHHHHHHHHH-H----Hhc
Confidence 8876543321 111110 0001111111 011 25789999998666554211111 1 124
Q ss_pred CCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccc
Q 006770 438 YTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLH 517 (632)
Q Consensus 438 ~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~ 517 (632)
|.++|+|-|.+ | |..+.... ..+ .+....+...|++||||+.-++... +.
T Consensus 114 GlktVfTdHSl-f-Gfad~~si--------~~n-------------~ll~~sL~~id~~IcVshtskentv-------lr 163 (426)
T KOG1111|consen 114 GLKTVFTDHSL-F-GFADIGSI--------LTN-------------KLLPLSLANIDRIICVSHTSKENTV-------LR 163 (426)
T ss_pred CceEEEecccc-c-cccchhhh--------hhc-------------ceeeeeecCCCcEEEEeecCCCceE-------EE
Confidence 68999999995 2 21111100 000 1233456789999999997665432 11
Q ss_pred cccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccC
Q 006770 518 NIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKG 597 (632)
Q Consensus 518 ~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKG 597 (632)
+.+ +++|+.+|||.+++..|.|.... + + +.+...|..++||..+||
T Consensus 164 ~~L--~p~kvsvIPnAv~~~~f~P~~~~------------------~-------------~-S~~i~~ivv~sRLvyrKG 209 (426)
T KOG1111|consen 164 GAL--APAKVSVIPNAVVTHTFTPDAAD------------------K-------------P-SADIITIVVASRLVYRKG 209 (426)
T ss_pred ecc--CHhHeeeccceeeccccccCccc------------------c-------------C-CCCeeEEEEEeeeeeccc
Confidence 111 68899999999999999995311 0 1 124578999999999999
Q ss_pred HHHHHHHHhhccC--CCcEEEEEecCh--hhHHHHHHh
Q 006770 598 VDLIAEAIPWMMG--QDVQLSHVGHWQ--TRFGRDAEE 631 (632)
Q Consensus 598 vdlLLeA~~~L~~--~dvqLVI~G~G~--~~le~~lke 631 (632)
+|+|+++++.+.+ .+++|+|+|||| .+||+.+++
T Consensus 210 iDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk 247 (426)
T KOG1111|consen 210 IDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEK 247 (426)
T ss_pred hHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHH
Confidence 9999999999987 499999999999 477777665
No 23
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.78 E-value=1.5e-17 Score=176.39 Aligned_cols=255 Identities=21% Similarity=0.246 Sum_probs=158.4
Q ss_pred EEEEEecccCCCC-----CCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEEC
Q 006770 279 NVILVAAECGPWS-----KTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYID 353 (632)
Q Consensus 279 KIL~It~e~~P~~-----~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~d 353 (632)
||+|+....+|.. ..||+++++.+|+++|+++||+|+|+++........ . ....+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~-~-------------------~~~~~ 60 (398)
T cd03800 1 RIALISLHGSPLAQPGGADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPP-I-------------------VELAP 60 (398)
T ss_pred CeEEEeccccccccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCCcccCC-c-------------------ccccc
Confidence 4666665543432 368999999999999999999999998654321110 0 01235
Q ss_pred CeEEEEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhc
Q 006770 354 GVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDN 433 (632)
Q Consensus 354 GV~v~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~ 433 (632)
++.++.+............+ +..+..|...+..+++.. ..+|||||+|.+.+++++..++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-------~~~~Div~~~~~~~~~~~~~~~~----- 121 (398)
T cd03800 61 GVRVVRVPAGPAEYLPKEEL-------WPYLDEFADDLLRFLRRE-------GGRPDLIHAHYWDSGLVALLLAR----- 121 (398)
T ss_pred ceEEEecccccccCCChhhc-------chhHHHHHHHHHHHHHhc-------CCCccEEEEecCccchHHHHHHh-----
Confidence 66666554321110000000 011112333444444421 13899999999887776655443
Q ss_pred CCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcC
Q 006770 434 GLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGG 513 (632)
Q Consensus 434 ~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G 513 (632)
..++|+|+|+|+...... ... .....+. . ......++..++.||.|+++|+...+.+.+. ++
T Consensus 122 --~~~~~~i~~~h~~~~~~~---~~~---~~~~~~~----~-----~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~-~~ 183 (398)
T cd03800 122 --RLGIPLVHTFHSLGAVKR---RHL---GAADTYE----P-----ARRIEAEERLLRAADRVIASTPQEAEELYSL-YG 183 (398)
T ss_pred --hcCCceEEEeecccccCC---ccc---ccccccc----h-----hhhhhHHHHHHhhCCEEEEcCHHHHHHHHHH-cc
Confidence 257899999998532100 000 0000000 0 0112355677889999999999888777652 11
Q ss_pred CccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCc
Q 006770 514 WGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLD 593 (632)
Q Consensus 514 ~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~ 593 (632)
.+..++.+|+||+|.+.|.+... . ...+++++.+ .+.++|+|+||+.
T Consensus 184 --------~~~~~~~vi~ng~~~~~~~~~~~--------------------~---~~~~~~~~~~--~~~~~i~~~gr~~ 230 (398)
T cd03800 184 --------AYPRRIRVVPPGVDLERFTPYGR--------------------A---EARRARLLRD--PDKPRILAVGRLD 230 (398)
T ss_pred --------ccccccEEECCCCCccceecccc--------------------h---hhHHHhhccC--CCCcEEEEEcccc
Confidence 14557999999999988865421 0 0113445554 3678999999999
Q ss_pred cccCHHHHHHHHhhccC--CCcEEEEEecChh
Q 006770 594 HQKGVDLIAEAIPWMMG--QDVQLSHVGHWQT 623 (632)
Q Consensus 594 ~qKGvdlLLeA~~~L~~--~dvqLVI~G~G~~ 623 (632)
++||++.+++|+..+.+ .+++|+++|+|..
T Consensus 231 ~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~ 262 (398)
T cd03800 231 PRKGIDTLIRAYAELPELRERANLVIVGGPRD 262 (398)
T ss_pred cccCHHHHHHHHHHHHHhCCCeEEEEEECCCC
Confidence 99999999999999875 3899999998863
No 24
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.77 E-value=3.3e-17 Score=171.06 Aligned_cols=218 Identities=23% Similarity=0.238 Sum_probs=145.3
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEEEecCccccccCCC
Q 006770 292 KTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNN 371 (632)
Q Consensus 292 ~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~~I~~p~~~~~~~~ 371 (632)
..||++.++.+|+++|+++||+|.|+++.... ... ....|++++.+.... ..
T Consensus 8 ~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~-~~~----------------------~~~~~~~~~~~~~~~-----~~ 59 (355)
T cd03819 8 ESGGVERGTLELARALVERGHRSLVASAGGRL-VAE----------------------LEAEGSRHIKLPFIS-----KN 59 (355)
T ss_pred ccCcHHHHHHHHHHHHHHcCCEEEEEcCCCch-HHH----------------------HHhcCCeEEEccccc-----cc
Confidence 46999999999999999999999999864221 100 011244444332110 00
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCccc
Q 006770 372 IYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQ 451 (632)
Q Consensus 372 iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~q 451 (632)
.+. .+ .+...+..+++ ..+||+||+|.+.....+.++.. ..++|+|+++|+....
T Consensus 60 ~~~--------~~-~~~~~l~~~~~---------~~~~dii~~~~~~~~~~~~~~~~-------~~~~~~i~~~h~~~~~ 114 (355)
T cd03819 60 PLR--------IL-LNVARLRRLIR---------EEKVDIVHARSRAPAWSAYLAAR-------RTRPPFVTTVHGFYSV 114 (355)
T ss_pred hhh--------hH-HHHHHHHHHHH---------HcCCCEEEECCCchhHHHHHHHH-------hcCCCEEEEeCCchhh
Confidence 110 01 11122333444 25899999998765554443322 2479999999985210
Q ss_pred CCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEee
Q 006770 452 GRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIV 531 (632)
Q Consensus 452 g~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIp 531 (632)
..+.+..+..+|.|+++|+..++.+... +| + +..++.+|+
T Consensus 115 -------------------------------~~~~~~~~~~~~~vi~~s~~~~~~~~~~-~~--~------~~~k~~~i~ 154 (355)
T cd03819 115 -------------------------------NFRYNAIMARGDRVIAVSNFIADHIREN-YG--V------DPDRIRVIP 154 (355)
T ss_pred -------------------------------HHHHHHHHHhcCEEEEeCHHHHHHHHHh-cC--C------ChhhEEEec
Confidence 0022344578999999999888877642 32 1 567999999
Q ss_pred CCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC-
Q 006770 532 NGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG- 610 (632)
Q Consensus 532 NGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~- 610 (632)
||+|...|.+... .......++++++++ ++.++|+|+||+.++||++.+++|+..+..
T Consensus 155 ngi~~~~~~~~~~-------------------~~~~~~~~~~~~~~~--~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~ 213 (355)
T cd03819 155 RGVDLDRFDPGAV-------------------PPERILALAREWPLP--KGKPVILLPGRLTRWKGQEVFIEALARLKKD 213 (355)
T ss_pred CCccccccCcccc-------------------chHHHHHHHHHcCCC--CCceEEEEeeccccccCHHHHHHHHHHHHhc
Confidence 9999988865421 011122367777776 467899999999999999999999999876
Q ss_pred -CCcEEEEEecChh
Q 006770 611 -QDVQLSHVGHWQT 623 (632)
Q Consensus 611 -~dvqLVI~G~G~~ 623 (632)
.+++|+|+|.|+.
T Consensus 214 ~~~~~l~ivG~~~~ 227 (355)
T cd03819 214 DPDVHLLIVGDAQG 227 (355)
T ss_pred CCCeEEEEEECCcc
Confidence 4899999999864
No 25
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.77 E-value=8.1e-17 Score=168.37 Aligned_cols=239 Identities=20% Similarity=0.193 Sum_probs=146.2
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++|..+++|- ..||+++++.+|+++|.++||+|.|+++....... .....|++++
T Consensus 1 ~i~~i~~~~~~~-~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~----------------------~~~~~~i~~~ 57 (363)
T cd04955 1 KIAIIGTRGIPA-KYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK----------------------ETEYNGVRLI 57 (363)
T ss_pred CeEEEecCcCCc-ccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc----------------------ccccCCceEE
Confidence 689998876653 58999999999999999999999999975432110 0123677777
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~ 438 (632)
.++.+... ... .....+. .+...++. ..++|+||.+.....++...++ ..+
T Consensus 58 ~~~~~~~~-----~~~----~~~~~~~----~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~~~--------~~~ 108 (363)
T cd04955 58 HIPAPEIG-----GLG----TIIYDIL----AILHALFV--------KRDIDHVHALGPAIAPFLPLLR--------LKG 108 (363)
T ss_pred EcCCCCcc-----chh----hhHHHHH----HHHHHHhc--------cCCeEEEEecCccHHHHHHHHH--------hcC
Confidence 66543210 000 0001111 11111111 2355666655433322221111 247
Q ss_pred CeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcccc
Q 006770 439 TRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHN 518 (632)
Q Consensus 439 iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~ 518 (632)
+|+|+++|+..+... . .+. .. +.+ ....++.+++.||.|+++|+..++.+... +|
T Consensus 109 ~~~v~~~h~~~~~~~----~-----~~~-~~---~~~------~~~~~~~~~~~ad~ii~~s~~~~~~~~~~-~~----- 163 (363)
T cd04955 109 KKVVVNMDGLEWKRA----K-----WGR-PA---KRY------LKFGEKLAVKFADRLIADSPGIKEYLKEK-YG----- 163 (363)
T ss_pred CCEEEEccCcceeec----c-----ccc-ch---hHH------HHHHHHHHHhhccEEEeCCHHHHHHHHHh-cC-----
Confidence 899999999643210 0 000 00 000 12334567789999999999988887542 22
Q ss_pred ccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCH
Q 006770 519 IINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGV 598 (632)
Q Consensus 519 il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGv 598 (632)
... .+|+||+|...+.+. ...+++++++ +.+.|+|+||+.++||+
T Consensus 164 -----~~~-~~i~ngv~~~~~~~~--------------------------~~~~~~~~~~---~~~~i~~~G~~~~~Kg~ 208 (363)
T cd04955 164 -----RDS-TYIPYGADHVVSSEE--------------------------DEILKKYGLE---PGRYYLLVGRIVPENNI 208 (363)
T ss_pred -----CCC-eeeCCCcChhhcchh--------------------------hhhHHhcCCC---CCcEEEEEecccccCCH
Confidence 112 899999998765431 1133455654 34578899999999999
Q ss_pred HHHHHHHhhccCCCcEEEEEecCh--hhHHHHHH
Q 006770 599 DLIAEAIPWMMGQDVQLSHVGHWQ--TRFGRDAE 630 (632)
Q Consensus 599 dlLLeA~~~L~~~dvqLVI~G~G~--~~le~~lk 630 (632)
+.|++|++.+.. +++|+|+|+|+ ..+.+.++
T Consensus 209 ~~li~a~~~l~~-~~~l~ivG~~~~~~~~~~~~~ 241 (363)
T cd04955 209 DDLIEAFSKSNS-GKKLVIVGNADHNTPYGKLLK 241 (363)
T ss_pred HHHHHHHHhhcc-CceEEEEcCCCCcchHHHHHH
Confidence 999999998864 89999999984 34555443
No 26
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.77 E-value=4.5e-17 Score=170.28 Aligned_cols=238 Identities=14% Similarity=0.111 Sum_probs=150.8
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||+++++.+ ..||.+.++.+++++|.+.||+|+++++........ . . ....|+.++
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~--~----~--------------~~~~~~~~~ 56 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYD--D----E--------------IEKLGGKIY 56 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchH--H----H--------------HHHcCCeEE
Confidence 689998864 379999999999999999999999999764431000 0 0 012345554
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~ 438 (632)
.+.... .. +.+ +.+.+.++++ ..+|||||+|......++.++... .+
T Consensus 57 ~~~~~~-------~~-------~~~---~~~~~~~~~~---------~~~~Dvv~~~~~~~~~~~~~~~~~-------~~ 103 (358)
T cd03812 57 YIPARK-------KN-------PLK---YFKKLYKLIK---------KNKYDIVHVHGSSASGFILLAAKK-------AG 103 (358)
T ss_pred EecCCC-------cc-------HHH---HHHHHHHHHh---------cCCCCEEEEeCcchhHHHHHHHhh-------CC
Confidence 332110 00 011 1122223333 358999999987644444333221 23
Q ss_pred Ce-EEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccc
Q 006770 439 TR-SLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLH 517 (632)
Q Consensus 439 iP-vV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~ 517 (632)
.| +|++.|+..+.... .. ... . ...+.+..++.+|.++++|+..++.+...
T Consensus 104 ~~~~v~~~~~~~~~~~~----~~------~~~-----~------~~~~~~~~~~~~~~~i~~s~~~~~~~~~~------- 155 (358)
T cd03812 104 VKVRIAHSHNTSDSHDK----KK------KIL-----K------YKVLRKLINRLATDYLACSEEAGKWLFGK------- 155 (358)
T ss_pred CCeEEEEeccccccccc----cc------hhh-----H------HHHHHHHHHhcCCEEEEcCHHHHHHHHhC-------
Confidence 44 57788885321110 00 000 0 01234556788999999999888776541
Q ss_pred cccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccC
Q 006770 518 NIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKG 597 (632)
Q Consensus 518 ~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKG 597 (632)
....++.+||||||.+.|.+... .+.. +++++.. .+.++|+|+||+.++||
T Consensus 156 ----~~~~~~~vi~ngvd~~~~~~~~~----------------------~~~~-~~~~~~~--~~~~~i~~vGr~~~~Kg 206 (358)
T cd03812 156 ----VKNKKFKVIPNGIDLEKFIFNEE----------------------IRKK-RRELGIL--EDKFVIGHVGRFSEQKN 206 (358)
T ss_pred ----CCcccEEEEeccCcHHHcCCCch----------------------hhhH-HHHcCCC--CCCEEEEEEeccccccC
Confidence 14678999999999987765311 1111 4455554 46789999999999999
Q ss_pred HHHHHHHHhhccC--CCcEEEEEecChh--hHHHHHH
Q 006770 598 VDLIAEAIPWMMG--QDVQLSHVGHWQT--RFGRDAE 630 (632)
Q Consensus 598 vdlLLeA~~~L~~--~dvqLVI~G~G~~--~le~~lk 630 (632)
++.+++|+..+.+ .+++|+|+|+|+. .+++.++
T Consensus 207 ~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~ 243 (358)
T cd03812 207 HEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVK 243 (358)
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHH
Confidence 9999999999975 3899999999983 4554443
No 27
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.77 E-value=7.4e-17 Score=168.18 Aligned_cols=235 Identities=18% Similarity=0.195 Sum_probs=153.0
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||+++++.+ ..||++.++.+|+++|.++||+|+|++......... . .....+.
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~--~---------------------~~~~~~~ 53 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKP--P---------------------IDATIIL 53 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccc--h---------------------hhccceE
Confidence 588887653 579999999999999999999999998643221100 0 0000000
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~ 438 (632)
.+... .... .+......+.++++ ..+|||||+|.+++.+++.+++.. ..+
T Consensus 54 ~~~~~------~~~~---------~~~~~~~~~~~~~~---------~~~pdiv~~~~~~~~~~~~l~~~~------~~~ 103 (360)
T cd04951 54 NLNMS------KNPL---------SFLLALWKLRKILR---------QFKPDVVHAHMFHANIFARLLRLF------LPS 103 (360)
T ss_pred Eeccc------ccch---------hhHHHHHHHHHHHH---------hcCCCEEEEcccchHHHHHHHHhh------CCC
Confidence 11110 0000 00111122334444 358999999988776665555432 247
Q ss_pred CeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcccc
Q 006770 439 TRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHN 518 (632)
Q Consensus 439 iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~ 518 (632)
+|+|+|.|+....+. . ...+.+.....++.++++|+...+.+.+. .+
T Consensus 104 ~~~v~~~h~~~~~~~--------------~-------------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~----- 150 (360)
T cd04951 104 PPLICTAHSKNEGGR--------------L-------------RMLAYRLTDFLSDLTTNVSKEALDYFIAS-KA----- 150 (360)
T ss_pred CcEEEEeeccCchhH--------------H-------------HHHHHHHHhhccCceEEEcHHHHHHHHhc-cC-----
Confidence 899999998532110 0 01122334456889999999888777652 11
Q ss_pred ccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCH
Q 006770 519 IINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGV 598 (632)
Q Consensus 519 il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGv 598 (632)
.+..++.+||||+|...|.+.. ..+..++++++++ ++.++++|+||+.++||+
T Consensus 151 ---~~~~~~~~i~ng~~~~~~~~~~----------------------~~~~~~~~~~~~~--~~~~~~l~~g~~~~~kg~ 203 (360)
T cd04951 151 ---FNANKSFVVYNGIDTDRFRKDP----------------------ARRLKIRNALGVK--NDTFVILAVGRLVEAKDY 203 (360)
T ss_pred ---CCcccEEEEccccchhhcCcch----------------------HHHHHHHHHcCcC--CCCEEEEEEeeCchhcCc
Confidence 1567999999999988775531 1234467788886 367899999999999999
Q ss_pred HHHHHHHhhccCC--CcEEEEEecCh--hhHHHHHH
Q 006770 599 DLIAEAIPWMMGQ--DVQLSHVGHWQ--TRFGRDAE 630 (632)
Q Consensus 599 dlLLeA~~~L~~~--dvqLVI~G~G~--~~le~~lk 630 (632)
+.+++|+..+.+. +++|+|+|+|+ ..+.+.++
T Consensus 204 ~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~ 239 (360)
T cd04951 204 PNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIK 239 (360)
T ss_pred HHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHH
Confidence 9999999988763 89999999997 34444444
No 28
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.76 E-value=5.9e-17 Score=172.84 Aligned_cols=248 Identities=19% Similarity=0.178 Sum_probs=143.9
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECC-eE
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDG-VD 356 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dG-V~ 356 (632)
||||++++.+ ..||+++++..|+++|+++||+|+|+|+..+..... ....+| +.
T Consensus 1 mkIl~~~~~~----~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~---------------------~~~~~~~~~ 55 (392)
T cd03805 1 LRVAFIHPDL----GIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCF---------------------EETKDGTLP 55 (392)
T ss_pred CeEEEECCCC----CCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcc---------------------hhccCCeeE
Confidence 8999997653 579999999999999999999999999754321100 001111 33
Q ss_pred EEEecCccccccCCCCCCCChhhHHHHHHHHHHHHHH--hhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcC
Q 006770 357 FVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIE--IPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNG 434 (632)
Q Consensus 357 v~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e--~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~ 434 (632)
+..+... . +...+. +...+..+..+...... +++ ..++||||+|.+..+. ++ ++.
T Consensus 56 i~~~~~~-~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~Dvi~~~~~~~~~-~~-~~~------ 112 (392)
T cd03805 56 VRVRGDW-L---PRSIFG--RFHILCAYLRMLYLALYLLLLP---------DEKYDVFIVDQVSACV-PL-LKL------ 112 (392)
T ss_pred EEEEeEE-E---cchhhH--hHHHHHHHHHHHHHHHHHHhcc---------cCCCCEEEEcCcchHH-HH-HHH------
Confidence 3222211 0 000111 00001111111111110 111 3589999999765432 22 222
Q ss_pred CCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCC
Q 006770 435 LMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGW 514 (632)
Q Consensus 435 ~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~ 514 (632)
..+.|+|+++|..... + .. ...... +++. .....+++..++.||.|+++|+..++.+... ++.
T Consensus 113 -~~~~~~i~~~h~~~~~--~-----~~---~~~~~~--~~~~---~~~~~~e~~~~~~ad~ii~~s~~~~~~~~~~-~~~ 175 (392)
T cd03805 113 -FSPSKILFYCHFPDQL--L-----AQ---RGSLLK--RLYR---KPFDWLEEFTTGMADKIVVNSNFTASVFKKT-FPS 175 (392)
T ss_pred -hcCCcEEEEEecChHH--h-----cC---CCcHHH--HHHH---HHHHHHHHHHhhCceEEEEcChhHHHHHHHH-hcc
Confidence 1237999999963211 0 00 000000 0000 0012356678899999999999888777642 210
Q ss_pred ccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCcc
Q 006770 515 GLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDH 594 (632)
Q Consensus 515 gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~ 594 (632)
....++.+|+||+|.+.|.|.... . .++..+.+ ++.++|+++||+.+
T Consensus 176 -------~~~~~~~vi~n~vd~~~~~~~~~~-------------------~-----~~~~~~~~--~~~~~i~~~grl~~ 222 (392)
T cd03805 176 -------LAKNPREVVYPCVDTDSFESTSED-------------------P-----DPGLLIPK--SGKKTFLSINRFER 222 (392)
T ss_pred -------cccCCcceeCCCcCHHHcCccccc-------------------c-----cccccccC--CCceEEEEEeeecc
Confidence 123345699999999888664210 0 11122232 36789999999999
Q ss_pred ccCHHHHHHHHhhccC-----CCcEEEEEecChh
Q 006770 595 QKGVDLIAEAIPWMMG-----QDVQLSHVGHWQT 623 (632)
Q Consensus 595 qKGvdlLLeA~~~L~~-----~dvqLVI~G~G~~ 623 (632)
+||++.|++|++.+.+ .+++|+++|+|+.
T Consensus 223 ~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~ 256 (392)
T cd03805 223 KKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDP 256 (392)
T ss_pred cCChHHHHHHHHHHHhhcccccCeEEEEEcCCCC
Confidence 9999999999999874 3899999999863
No 29
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.76 E-value=8.4e-17 Score=166.68 Aligned_cols=205 Identities=20% Similarity=0.197 Sum_probs=134.1
Q ss_pred cEEEEEecccCC--CCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCe
Q 006770 278 MNVILVAAECGP--WSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGV 355 (632)
Q Consensus 278 MKIL~It~e~~P--~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV 355 (632)
|||++|++.+.| -...||+++++..|+++|.++||+|+|+++........ . .
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~--~------------------------~ 54 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP--L------------------------V 54 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc--e------------------------e
Confidence 899999998754 23589999999999999999999999999764321100 0 0
Q ss_pred EEEEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCC
Q 006770 356 DFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGL 435 (632)
Q Consensus 356 ~v~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~ 435 (632)
.. ....... .... . ........+.+.++++ ..+|||||+|.+...++ +.+
T Consensus 55 ~~--~~~~~~~----~~~~----~-~~~~~~~~~~~~~~~~---------~~~~Divh~~~~~~~~~--~~~-------- 104 (335)
T cd03802 55 PV--VPEPLRL----DAPG----R-DRAEAEALALAERALA---------AGDFDIVHNHSLHLPLP--FAR-------- 104 (335)
T ss_pred ec--cCCCccc----ccch----h-hHhhHHHHHHHHHHHh---------cCCCCEEEecCcccchh--hhc--------
Confidence 00 0000000 0000 0 0011111122333343 35799999998776544 111
Q ss_pred CCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCc
Q 006770 436 MQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWG 515 (632)
Q Consensus 436 ~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~g 515 (632)
..++|+|+|+|+.... . . .. .......++.++++|+..++.+..
T Consensus 105 ~~~~~~v~~~h~~~~~----~--~-----------------------~~-~~~~~~~~~~~~~~s~~~~~~~~~------ 148 (335)
T cd03802 105 PLPVPVVTTLHGPPDP----E--L-----------------------LK-LYYAARPDVPFVSISDAQRRPWPP------ 148 (335)
T ss_pred ccCCCEEEEecCCCCc----c--c-----------------------ch-HHHhhCcCCeEEEecHHHHhhccc------
Confidence 3578999999995321 0 0 00 123346678999999987754321
Q ss_pred cccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccc
Q 006770 516 LHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQ 595 (632)
Q Consensus 516 L~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~q 595 (632)
..++.+|+||+|.+.|.+.. .+...|+|+||+.++
T Consensus 149 --------~~~~~vi~ngvd~~~~~~~~-------------------------------------~~~~~i~~~Gr~~~~ 183 (335)
T cd03802 149 --------LPWVATVHNGIDLDDYPFRG-------------------------------------PKGDYLLFLGRISPE 183 (335)
T ss_pred --------ccccEEecCCcChhhCCCCC-------------------------------------CCCCEEEEEEeeccc
Confidence 16889999999998876521 135689999999999
Q ss_pred cCHHHHHHHHhhccCCCcEEEEEecCh
Q 006770 596 KGVDLIAEAIPWMMGQDVQLSHVGHWQ 622 (632)
Q Consensus 596 KGvdlLLeA~~~L~~~dvqLVI~G~G~ 622 (632)
||++.+++|+.. .+++|+|+|.|+
T Consensus 184 Kg~~~li~~~~~---~~~~l~i~G~~~ 207 (335)
T cd03802 184 KGPHLAIRAARR---AGIPLKLAGPVS 207 (335)
T ss_pred cCHHHHHHHHHh---cCCeEEEEeCCC
Confidence 999999999765 379999999996
No 30
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.75 E-value=3.7e-17 Score=176.70 Aligned_cols=228 Identities=12% Similarity=0.131 Sum_probs=148.3
Q ss_pred cEEEEEecccCCC--CCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCe
Q 006770 278 MNVILVAAECGPW--SKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGV 355 (632)
Q Consensus 278 MKIL~It~e~~P~--~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV 355 (632)
-||+|++++-+|. ...||+++++..+++.|++ +|+|+|-..+.+++. + ...+|+
T Consensus 3 ~~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~-~--------------------~~~~~~ 58 (380)
T PRK15484 3 DKIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEY-T--------------------KVNDNC 58 (380)
T ss_pred ceEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCCCCch-h--------------------hccCCC
Confidence 3899999987654 3689999999999999954 999999766543321 0 123566
Q ss_pred EEEEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCC
Q 006770 356 DFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGL 435 (632)
Q Consensus 356 ~v~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~ 435 (632)
.+.+++.+....+....|.. . ....+...+...+.... ...+||||+|+... +... ++..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~------~~~~~vi~v~~~~~-~~~~-~~~~------ 118 (380)
T PRK15484 59 DIHYIGFSRIYKRLFQKWTR--L----DPLPYSQRILNIAHKFT------ITKDSVIVIHNSMK-LYRQ-IRER------ 118 (380)
T ss_pred ceEEEEeccccchhhhhhhc--c----CchhHHHHHHHHHHhcC------CCCCcEEEEeCcHH-hHHH-HHhh------
Confidence 66666443221100000000 0 00111222223232211 24699999998432 2221 1211
Q ss_pred CCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCc
Q 006770 436 MQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWG 515 (632)
Q Consensus 436 ~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~g 515 (632)
..+.|+|+|+|+. +. ...+..+++||++|+..++.+... +
T Consensus 119 ~~~~~~v~~~h~~-~~-----------------------------------~~~~~~~~~ii~~S~~~~~~~~~~-~--- 158 (380)
T PRK15484 119 APQAKLVMHMHNA-FE-----------------------------------PELLDKNAKIIVPSQFLKKFYEER-L--- 158 (380)
T ss_pred CCCCCEEEEEecc-cC-----------------------------------hhHhccCCEEEEcCHHHHHHHHhh-C---
Confidence 3568999999984 10 011235789999999888776541 1
Q ss_pred cccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccc
Q 006770 516 LHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQ 595 (632)
Q Consensus 516 L~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~q 595 (632)
+..++.+||||||.+.|.+.. +..+++++|++. +.++|+|+||+.++
T Consensus 159 -------~~~~i~vIpngvd~~~~~~~~------------------------~~~~~~~~~~~~--~~~~il~~Grl~~~ 205 (380)
T PRK15484 159 -------PNADISIVPNGFCLETYQSNP------------------------QPNLRQQLNISP--DETVLLYAGRISPD 205 (380)
T ss_pred -------CCCCEEEecCCCCHHHcCCcc------------------------hHHHHHHhCCCC--CCeEEEEeccCccc
Confidence 456899999999988776531 123567788863 56899999999999
Q ss_pred cCHHHHHHHHhhccC--CCcEEEEEecCh
Q 006770 596 KGVDLIAEAIPWMMG--QDVQLSHVGHWQ 622 (632)
Q Consensus 596 KGvdlLLeA~~~L~~--~dvqLVI~G~G~ 622 (632)
||++.|++|++.+.+ .+++|+|+|+|+
T Consensus 206 Kg~~~Li~A~~~l~~~~p~~~lvivG~g~ 234 (380)
T PRK15484 206 KGILLLMQAFEKLATAHSNLKLVVVGDPT 234 (380)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEEeCCc
Confidence 999999999999875 489999999985
No 31
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.74 E-value=9.4e-17 Score=170.97 Aligned_cols=240 Identities=18% Similarity=0.099 Sum_probs=145.6
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEE
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDF 357 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v 357 (632)
.||+||...+ ..||++.++..|+++|.+.||++.|++....... ... ....|+.+
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~-------~~~--------------~~~~~i~~ 56 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVALTEVSAF-------RKR--------------IQRPDVAF 56 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEEcCCCChh-------HHH--------------HHhcCceE
Confidence 4899998763 4699999999999999999999999974321100 000 11245666
Q ss_pred EEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCC
Q 006770 358 VFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQ 437 (632)
Q Consensus 358 ~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~ 437 (632)
+.+.... .. .+. +.+.+.++++. .+|||||+|+..+. .+.++.. ..
T Consensus 57 ~~~~~~~-------~~------~~~----~~~~l~~~l~~---------~~~Divh~~~~~~~-~~~~~~~-------~~ 102 (374)
T TIGR03088 57 YALHKQP-------GK------DVA----VYPQLYRLLRQ---------LRPDIVHTRNLAAL-EAQLPAA-------LA 102 (374)
T ss_pred EEeCCCC-------CC------ChH----HHHHHHHHHHH---------hCCCEEEEcchhHH-HHHHHHH-------hc
Confidence 5543210 00 011 11223344543 47999999975432 2222222 13
Q ss_pred CCeE-EEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcc
Q 006770 438 YTRS-LLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGL 516 (632)
Q Consensus 438 ~iPv-V~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL 516 (632)
++|. ++|.|+..+. .. ....+ .+ ..+.+.....+|.++++|+..++.+.+. ++ +
T Consensus 103 ~~~~~i~~~h~~~~~---~~--------~~~~~----~~-------~~~~~~~~~~~~~~i~vs~~~~~~~~~~-~~--~ 157 (374)
T TIGR03088 103 GVPARIHGEHGRDVF---DL--------DGSNW----KY-------RWLRRLYRPLIHHYVAVSRDLEDWLRGP-VK--V 157 (374)
T ss_pred CCCeEEEeecCcccc---cc--------hhhHH----HH-------HHHHHHHHhcCCeEEEeCHHHHHHHHHh-cC--C
Confidence 4553 4555542110 00 00000 00 1122334467899999999988777652 22 1
Q ss_pred ccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCcccc
Q 006770 517 HNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQK 596 (632)
Q Consensus 517 ~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qK 596 (632)
+..++.+|+||||.+.|.|... .+...+++...+ ++.++|+++||+.++|
T Consensus 158 ------~~~~~~vi~ngvd~~~~~~~~~----------------------~~~~~~~~~~~~--~~~~~i~~vGrl~~~K 207 (374)
T TIGR03088 158 ------PPAKIHQIYNGVDTERFHPSRG----------------------DRSPILPPDFFA--DESVVVGTVGRLQAVK 207 (374)
T ss_pred ------ChhhEEEeccCccccccCCCcc----------------------chhhhhHhhcCC--CCCeEEEEEecCCccc
Confidence 5678999999999988876421 011122233333 3678999999999999
Q ss_pred CHHHHHHHHhhccCC------CcEEEEEecCh--hhHHHHHHh
Q 006770 597 GVDLIAEAIPWMMGQ------DVQLSHVGHWQ--TRFGRDAEE 631 (632)
Q Consensus 597 GvdlLLeA~~~L~~~------dvqLVI~G~G~--~~le~~lke 631 (632)
|++.|++|+..+.+. +++|+++|+|+ ..+++.+++
T Consensus 208 g~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~ 250 (374)
T TIGR03088 208 DQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRA 250 (374)
T ss_pred CHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHH
Confidence 999999999988642 68999999997 355555543
No 32
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.74 E-value=2.2e-16 Score=170.59 Aligned_cols=248 Identities=20% Similarity=0.202 Sum_probs=140.4
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
|||+|...|++. ..+|+++|+++||+|+|+|+....... .||+++
T Consensus 1 ~il~~~~~~p~~---------~~~la~~L~~~G~~v~~~~~~~~~~~~--------------------------~~v~~~ 45 (396)
T cd03818 1 RILFVHQNFPGQ---------FRHLAPALAAQGHEVVFLTEPNAAPPP--------------------------GGVRVV 45 (396)
T ss_pred CEEEECCCCchh---------HHHHHHHHHHCCCEEEEEecCCCCCCC--------------------------CCeeEE
Confidence 689998876442 567999999999999999976432110 045555
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~ 438 (632)
.+..+.... ...+. +...+.......+++.+.+..+.. .+++|||||+|...+ .+.+++.. ..+
T Consensus 46 ~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~pdvi~~h~~~~--~~~~l~~~------~~~ 109 (396)
T cd03818 46 RYRPPRGPT--SGTHP--YLREFEEAVLRGQAVARALLALRA----KGFRPDVIVAHPGWG--ETLFLKDV------WPD 109 (396)
T ss_pred EecCCCCCC--CCCCc--cchhHHHHHHHHHHHHHHHHHHHh----cCCCCCEEEECCccc--hhhhHHHh------CCC
Confidence 554322110 01111 111222222222233333322210 146899999995332 22234432 246
Q ss_pred CeEEEEEeCCcc-cCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccc
Q 006770 439 TRSLLVIHNIAH-QGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLH 517 (632)
Q Consensus 439 iPvV~TIHn~~~-qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~ 517 (632)
+|+|.+.|-.-. .|.. ..+. ...+.......++. .........+..||.||++|+..++.+...
T Consensus 110 ~~~v~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~------- 174 (396)
T cd03818 110 APLIGYFEFYYRAEGAD--VGFD-PEFPPSLDDALRLR-----NRNALILLALAQADAGVSPTRWQRSTFPAE------- 174 (396)
T ss_pred CCEEEEEeeeecCCCCC--CCCC-CCCCCchhHHHHHH-----HhhhHhHHHHHhCCEEECCCHHHHhhCcHh-------
Confidence 888887764210 1100 0000 00010000000000 001113456789999999999887665431
Q ss_pred cccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcC-Ccccc
Q 006770 518 NIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGR-LDHQK 596 (632)
Q Consensus 518 ~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGR-L~~qK 596 (632)
...++.+|+||||++.|.|.... ...++...+++ ++.++|+|+|| +.++|
T Consensus 175 -----~~~ki~vI~ngvd~~~f~~~~~~----------------------~~~~~~~~~~~--~~~~~i~~vgR~l~~~K 225 (396)
T cd03818 175 -----LRSRISVIHDGIDTDRLRPDPQA----------------------RLRLPNGRVLT--PGDEVITFVARNLEPYR 225 (396)
T ss_pred -----hccceEEeCCCccccccCCCchh----------------------hhcccccccCC--CCCeEEEEECCCccccc
Confidence 23689999999999998774210 01112222333 36789999998 99999
Q ss_pred CHHHHHHHHhhccC--CCcEEEEEecC
Q 006770 597 GVDLIAEAIPWMMG--QDVQLSHVGHW 621 (632)
Q Consensus 597 GvdlLLeA~~~L~~--~dvqLVI~G~G 621 (632)
|++.|++|++.+.+ .+++|+|+|++
T Consensus 226 g~~~ll~a~~~l~~~~~~~~lvivG~~ 252 (396)
T cd03818 226 GFHVFMRALPRLLRARPDARVVIVGGD 252 (396)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 99999999998875 48999999974
No 33
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.74 E-value=2e-16 Score=173.01 Aligned_cols=258 Identities=11% Similarity=0.018 Sum_probs=149.7
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEE
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDF 357 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v 357 (632)
-||++++.. -+|....+..++++|+++||+|+||++..+.... +. ....||.+
T Consensus 4 ~~~~~~~~~------~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~--~~-------------------~~~~~v~~ 56 (415)
T cd03816 4 KRVCVLVLG------DIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHD--EI-------------------LSNPNITI 56 (415)
T ss_pred cEEEEEEec------ccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCH--HH-------------------hcCCCEEE
Confidence 477888763 3566677788999999999999999975332110 00 12356777
Q ss_pred EEecCcc-ccccCCCCCCCChhhHHHHHHH-HHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchh---HHHHHHHHHhhh
Q 006770 358 VFLDSPL-FRHLGNNIYGGGREDILKRMVL-FCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTA---LLPVYLKAYYRD 432 (632)
Q Consensus 358 ~~I~~p~-~~~~~~~iY~~~~~d~~~r~~l-f~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sa---llp~~l~~~~~~ 432 (632)
+.+..+. ... ... +.-.+....+ ....+...+.. ..+||+||+|..... .++.+++.
T Consensus 57 ~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~l~~--------~~~~Dvi~~~~~~~~~~~~~a~~~~~---- 118 (415)
T cd03816 57 HPLPPPPQRLN----KLP--FLLFAPLKVLWQFFSLLWLLYK--------LRPADYILIQNPPSIPTLLIAWLYCL---- 118 (415)
T ss_pred EECCCCccccc----cch--HHHHHHHHHHHHHHHHHHHHHh--------cCCCCEEEEeCCCCchHHHHHHHHHH----
Confidence 7665432 000 000 0000001111 11112111211 247999999964432 22222222
Q ss_pred cCCCCCCeEEEEEeCCcccCCCCCCccccCCCC-ccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhh
Q 006770 433 NGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLP-GHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAE 511 (632)
Q Consensus 433 ~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp-~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~ 511 (632)
..++|+|+|+|+..+. . . ..+.. .... ..+ ...+++..++.||+||++|+.+++.+.+
T Consensus 119 ---~~~~~~V~~~h~~~~~----~--~-~~~~~~~~~~--~~~-------~~~~e~~~~~~ad~ii~vS~~~~~~l~~-- 177 (415)
T cd03816 119 ---LRRTKLIIDWHNYGYT----I--L-ALKLGENHPL--VRL-------AKWYEKLFGRLADYNLCVTKAMKEDLQQ-- 177 (415)
T ss_pred ---HhCCeEEEEcCCchHH----H--H-hcccCCCCHH--HHH-------HHHHHHHHhhcCCEeeecCHHHHHHHHh--
Confidence 2478999999985321 0 0 00110 0000 001 1235667778999999999999988764
Q ss_pred cCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHH-------------HhCCC
Q 006770 512 GGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQR-------------EFGLP 578 (632)
Q Consensus 512 ~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk-------------~lGL~ 578 (632)
+| + +..++.+|+||. ...|.|... ...+..+.+ ..++.
T Consensus 178 ~~--~------~~~ki~vI~Ng~-~~~f~p~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (415)
T cd03816 178 FN--N------WKIRATVLYDRP-PEQFRPLPL--------------------EEKHELFLKLAKTFLTRELRIGAVQLS 228 (415)
T ss_pred hh--c------cCCCeeecCCCC-HHHceeCcH--------------------HHHHHHHHhccccccccccccccceec
Confidence 22 1 578999999994 456766421 011111111 12233
Q ss_pred CCCCCcEEEEEcCCccccCHHHHHHHHhhccC--------CCcEEEEEecCh--hhHHHHHHh
Q 006770 579 VRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG--------QDVQLSHVGHWQ--TRFGRDAEE 631 (632)
Q Consensus 579 ~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~--------~dvqLVI~G~G~--~~le~~lke 631 (632)
. ++..+++++||+.++||++.|++|+..+.+ .+++|+|+|+|+ ..+++++++
T Consensus 229 ~-~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~ 290 (415)
T cd03816 229 E-ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKE 290 (415)
T ss_pred C-CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHH
Confidence 2 345688899999999999999999999863 369999999997 466666654
No 34
>PLN00142 sucrose synthase
Probab=99.74 E-value=1.3e-16 Score=185.26 Aligned_cols=297 Identities=16% Similarity=0.127 Sum_probs=167.9
Q ss_pred CcEEEEEecccC--C-----CCCCCcHHHHHHHHH--------HHHHHCCCeE----EEEccCCCCCCCCCCcccceeee
Q 006770 277 VMNVILVAAECG--P-----WSKTGGLGDVAGALP--------KALARRGHRV----MVVAPHYGNYAEPQDTGIRKRYR 337 (632)
Q Consensus 277 ~MKIL~It~e~~--P-----~~~~GGlg~~v~~La--------kaLakrGheV----~VVtP~y~~~~~~~dig~r~~~~ 337 (632)
.|||+||+.+-+ | ...+||.-+|+.+++ ++|+++||+| .|+|....... ..+-..+.. +
T Consensus 279 ~~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~-~~~~~~~~e-~ 356 (815)
T PLN00142 279 VFNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAK-GTTCNQRLE-K 356 (815)
T ss_pred hHhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCcc-CCcccCcce-e
Confidence 479999998742 2 246899999997655 6778899977 48886543211 000000000 0
Q ss_pred ecCccceEEEEEEEECCeEEEEecCccccccCCCCCCCC---hhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEE
Q 006770 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGG---REDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIA 414 (632)
Q Consensus 338 i~g~~~~v~v~~~~~dGV~v~~I~~p~~~~~~~~iY~~~---~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHa 414 (632)
+ .-..++.++.++...- ++ |-.. +.+.+..+..|+..+.+.+.... ...||+||+
T Consensus 357 v-----------~~~~~~~I~rvP~g~~----~~-~l~~~i~ke~l~p~L~~f~~~~~~~~~~~~------~~~PDlIHa 414 (815)
T PLN00142 357 V-----------SGTEHSHILRVPFRTE----KG-ILRKWISRFDVWPYLETFAEDAASEILAEL------QGKPDLIIG 414 (815)
T ss_pred c-----------cCCCceEEEecCCCCC----cc-ccccccCHHHHHHHHHHHHHHHHHHHHHhc------CCCCCEEEE
Confidence 0 1124666666653210 00 1111 12333334455655555443211 246999999
Q ss_pred cCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCC
Q 006770 415 NDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTAD 494 (632)
Q Consensus 415 Hdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD 494 (632)
|+|.+++++..++.. .++|.|+|.|.+.-... . ..|..+.... ..|.. ...+..+..++..||
T Consensus 415 HYwdsg~vA~~La~~-------lgVP~v~T~HsL~k~K~-~-----~~~~~~~~~e--~~y~~--~~r~~aE~~a~~~Ad 477 (815)
T PLN00142 415 NYSDGNLVASLLAHK-------LGVTQCTIAHALEKTKY-P-----DSDIYWKKFD--DKYHF--SCQFTADLIAMNHAD 477 (815)
T ss_pred CCccHHHHHHHHHHH-------hCCCEEEEcccchhhhc-c-----ccCCcccccc--hhhhh--hhchHHHHHHHHhhh
Confidence 999999999877653 58999999998742111 0 0111100000 00000 001334667888999
Q ss_pred eEEEechhHHHHHH---H---hhcCCc---ccccc---ccCCCcEEEeeCCCcCCCCCCcccc--ccccCCCcccccccc
Q 006770 495 RVVTVSRGYSWELK---T---AEGGWG---LHNII---NEVDWKLSGIVNGIDTKEWSPMYDI--HLTSDGYTNYCLDTL 560 (632)
Q Consensus 495 ~VItVS~~~a~el~---~---~~~G~g---L~~il---~~~~~Ki~vIpNGID~~~F~P~~~~--~l~~~~~~~~s~ed~ 560 (632)
.||+.|......+. . +..++. |..++ .....|+.+|++|+|...|.|.... .+. ...+ ..+.+
T Consensus 478 ~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~--~l~n-~I~~~ 554 (815)
T PLN00142 478 FIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLT--SLHP-SIEEL 554 (815)
T ss_pred HHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHH--hhcc-cchhh
Confidence 99999976543221 1 001111 11111 1124599999999999999874211 000 0000 00000
Q ss_pred cCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC--CCcEEEEEecC
Q 006770 561 HTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG--QDVQLSHVGHW 621 (632)
Q Consensus 561 ~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~--~dvqLVI~G~G 621 (632)
--.....++.+|+..+++.|+|+++||++++||++.|++|++.+.+ .+++|+|+|.|
T Consensus 555 ----l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg 613 (815)
T PLN00142 555 ----LYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGF 613 (815)
T ss_pred ----cCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 0012224557887555678999999999999999999999998754 37999999987
No 35
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.73 E-value=2.6e-16 Score=171.90 Aligned_cols=155 Identities=18% Similarity=0.149 Sum_probs=107.6
Q ss_pred CCCccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHH
Q 006770 406 GDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNI 485 (632)
Q Consensus 406 ~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i 485 (632)
..+||+||+|.++++.++.+++.. + ....|+++|+|+.+... . ... ..+ ...
T Consensus 116 ~~~~diihaH~~~~~~~~~~~~~~----~-~~~~~~~~t~Hg~d~~~---~------~~~-------~~~-------~~~ 167 (406)
T PRK15427 116 PFVADVFIAHFGPAGVTAAKLREL----G-VLRGKIATIFHGIDISS---R------EVL-------NHY-------TPE 167 (406)
T ss_pred cCCCCEEEEcCChHHHHHHHHHHh----C-CCCCCeEEEEccccccc---c------hhh-------hhh-------hHH
Confidence 357999999988776655544431 1 12346788999853210 0 000 001 123
Q ss_pred HHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCch
Q 006770 486 FAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKP 565 (632)
Q Consensus 486 ~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~ 565 (632)
++..++.||.|+++|+..++.+.+ .| . +.+|+.+|+||||.+.|.+....
T Consensus 168 ~~~~~~~ad~vv~~S~~~~~~l~~--~g--~------~~~ki~vi~nGvd~~~f~~~~~~-------------------- 217 (406)
T PRK15427 168 YQQLFRRGDLMLPISDLWAGRLQK--MG--C------PPEKIAVSRMGVDMTRFSPRPVK-------------------- 217 (406)
T ss_pred HHHHHHhCCEEEECCHHHHHHHHH--cC--C------CHHHEEEcCCCCCHHHcCCCccc--------------------
Confidence 455678999999999998888764 22 1 56799999999999888653100
Q ss_pred HHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC--CCcEEEEEecCh--hhHHHHHHh
Q 006770 566 QCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG--QDVQLSHVGHWQ--TRFGRDAEE 631 (632)
Q Consensus 566 ~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~--~dvqLVI~G~G~--~~le~~lke 631 (632)
. ..+...|+|+||+.++||++.|++|++.+.+ .+++|+|+|+|+ +++++.+++
T Consensus 218 -----------~--~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~ 274 (406)
T PRK15427 218 -----------A--PATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQ 274 (406)
T ss_pred -----------c--CCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHH
Confidence 0 0134579999999999999999999999875 389999999997 456666654
No 36
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.73 E-value=2.9e-16 Score=171.84 Aligned_cols=264 Identities=14% Similarity=0.105 Sum_probs=143.5
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeE-
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVD- 356 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~- 356 (632)
||||+|... ...||+|..+.+|++.|.++||+|.++..+....... . ...++.
T Consensus 1 mkil~i~~~----l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~-~---------------------~~~~~~~ 54 (405)
T PRK10125 1 MNILQFNVR----LAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKES-V---------------------SHQNYPQ 54 (405)
T ss_pred CeEEEEEee----ecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccc-c---------------------ccCCcce
Confidence 899999975 2679999999999999999999999998653221110 0 001111
Q ss_pred EEEecCccccccCCCCCCCChhhHHHHHHHH-HHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHH--HHH--Hhh
Q 006770 357 FVFLDSPLFRHLGNNIYGGGREDILKRMVLF-CKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVY--LKA--YYR 431 (632)
Q Consensus 357 v~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf-~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~--l~~--~~~ 431 (632)
++.+. +.+...-..... + ...+..++ ..+..+++.. .++|||||+|..|++++.+. +.. ..+
T Consensus 55 ~~~~~-~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~i~~--------~~~pDviHlH~~~~~~~~~~~l~~~~~~~~ 121 (405)
T PRK10125 55 VIKHT-PRMTAMANIALF--R--LFNRDLFGNFNELYRTITR--------TPGPVVLHFHVLHSYWLNLKSVVRFCEKVK 121 (405)
T ss_pred EEEec-ccHHHHHHHHHH--H--hcchhhcchHHHHHHHHhh--------ccCCCEEEEecccCceecHHHHHHHHhhhh
Confidence 11111 100000000000 0 00000011 1122233321 36899999997776543221 111 000
Q ss_pred hcCCCCCCeEEEEEeCC-cccCCCCCCc-cc----cCCCCcc---cccc-ccccCCCCchhHHHHHHHhhcCCeEEEech
Q 006770 432 DNGLMQYTRSLLVIHNI-AHQGRGPVSD-FV----YTDLPGH---YLDL-FKLYDPVGGEHFNIFAAGLKTADRVVTVSR 501 (632)
Q Consensus 432 ~~~~~~~iPvV~TIHn~-~~qg~~p~~~-l~----~~glp~~---~~~~-l~~~~p~~g~~~~i~r~~l~~AD~VItVS~ 501 (632)
....++|+|+|+|++ .+.|+|.... +. .++-++. +.+. +..............+..++.++.+|++|+
T Consensus 122 --~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~ 199 (405)
T PRK10125 122 --NHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQ 199 (405)
T ss_pred --cccCCCCEEEecccccccCCCcCCCcccccccccCCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCH
Confidence 012478999999996 4567765421 11 1111110 0000 000000000011222333455789999999
Q ss_pred hHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCC
Q 006770 502 GYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRD 581 (632)
Q Consensus 502 ~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~ 581 (632)
.+++.+... + ...++.+|+||||++.+.+.... .. .+ .+ +
T Consensus 200 ~l~~~~~~~-~----------~~~~i~vI~NGid~~~~~~~~~~-------------------~~----~~----~~--~ 239 (405)
T PRK10125 200 HVADAFNSL-Y----------GPGRCRIINNGIDMATEAILAEL-------------------PP----VR----ET--Q 239 (405)
T ss_pred HHHHHHHHH-c----------CCCCEEEeCCCcCcccccccccc-------------------cc----cc----cC--C
Confidence 999876532 1 24689999999998544332100 00 00 01 3
Q ss_pred CCcEEEEEcCC--ccccCHHHHHHHHhhccCCCcEEEEEecChh
Q 006770 582 DVPVIGFIGRL--DHQKGVDLIAEAIPWMMGQDVQLSHVGHWQT 623 (632)
Q Consensus 582 d~pvIlfVGRL--~~qKGvdlLLeA~~~L~~~dvqLVI~G~G~~ 623 (632)
+.++|+|+||+ .+.||++.|++|+..+. .+++|+|+|+|++
T Consensus 240 ~~~~il~v~~~~~~~~Kg~~~li~A~~~l~-~~~~L~ivG~g~~ 282 (405)
T PRK10125 240 GKPKIAVVAHDLRYDGKTDQQLVREMMALG-DKIELHTFGKFSP 282 (405)
T ss_pred CCCEEEEEEeccccCCccHHHHHHHHHhCC-CCeEEEEEcCCCc
Confidence 56799999994 47899999999999874 5799999999864
No 37
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.72 E-value=6e-16 Score=161.19 Aligned_cols=235 Identities=20% Similarity=0.182 Sum_probs=146.3
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++++..|+|. .||++.++.+|+++|.++||+|+|++......... ....+.+++
T Consensus 1 kil~i~~~~~p~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~----------------------~~~~~~~~~ 56 (357)
T cd03795 1 RVLHVGKFYPPD--RGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRD----------------------EERNGHRVI 56 (357)
T ss_pred CeeEecCCCCCC--CCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchh----------------------hhccCceEE
Confidence 799999988884 79999999999999999999999998753321110 011222333
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~ 438 (632)
.+.. +.......+. .. ++.+ .. +. ..+|||||+|........ +.... ..+
T Consensus 57 ~~~~--~~~~~~~~~~-------~~--~~~~--~~-~~---------~~~~Dii~~~~~~~~~~~--~~~~~-----~~~ 106 (357)
T cd03795 57 RAPS--LLNVASTPFS-------PS--FFKQ--LK-KL---------AKKADVIHLHFPNPLADL--ALLLL-----PRK 106 (357)
T ss_pred Eeec--cccccccccc-------HH--HHHH--HH-hc---------CCCCCEEEEecCcchHHH--HHHHh-----ccC
Confidence 2221 1100000010 00 1100 11 11 358999999964432221 11111 147
Q ss_pred CeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcccc
Q 006770 439 TRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHN 518 (632)
Q Consensus 439 iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~ 518 (632)
+|+++++|+...... . . ..++ ..+++..++.||.|+++|+.+.+.+... ..
T Consensus 107 ~~~i~~~h~~~~~~~----------~---~---~~~~-------~~~~~~~~~~~d~vi~~s~~~~~~~~~~-~~----- 157 (357)
T cd03795 107 KPVVVHWHSDIVKQK----------L---L---LKLY-------RPLQRRFLRRADAIVATSPNYAETSPVL-RR----- 157 (357)
T ss_pred ceEEEEEcChhhccc----------h---h---hhhh-------hHHHHHHHHhcCEEEeCcHHHHHHHHHh-cC-----
Confidence 899999997422100 0 0 0011 2345667889999999999988766541 11
Q ss_pred ccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCH
Q 006770 519 IINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGV 598 (632)
Q Consensus 519 il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGv 598 (632)
...++.+||||+|.+.|.+... .+. ..+..+ .+.++|+|+||+.+.||+
T Consensus 158 ----~~~~~~~i~~gi~~~~~~~~~~----------------------~~~---~~~~~~--~~~~~i~~~G~~~~~K~~ 206 (357)
T cd03795 158 ----FRDKVRVIPLGLDPARYPRPDA----------------------LEE---AIWRRA--AGRPFFLFVGRLVYYKGL 206 (357)
T ss_pred ----CccceEEecCCCChhhcCCcch----------------------hhh---HhhcCC--CCCcEEEEecccccccCH
Confidence 2378999999999988765310 000 112222 367899999999999999
Q ss_pred HHHHHHHhhccCCCcEEEEEecChh--hHHHHH
Q 006770 599 DLIAEAIPWMMGQDVQLSHVGHWQT--RFGRDA 629 (632)
Q Consensus 599 dlLLeA~~~L~~~dvqLVI~G~G~~--~le~~l 629 (632)
+.+++|+..+. +++|+|+|+|+. .+.+.+
T Consensus 207 ~~li~a~~~l~--~~~l~i~G~g~~~~~~~~~~ 237 (357)
T cd03795 207 DVLLEAAAALP--DAPLVIVGEGPLEAELEALA 237 (357)
T ss_pred HHHHHHHHhcc--CcEEEEEeCChhHHHHHHHH
Confidence 99999999986 899999999973 344443
No 38
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.72 E-value=5.6e-17 Score=181.57 Aligned_cols=285 Identities=19% Similarity=0.196 Sum_probs=162.7
Q ss_pred EEEecccCCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEccCCCCCCC-CC---Ccc---cceee-eecCccceEEEEEEE
Q 006770 281 ILVAAECGPWSKTGGLGDVAGALPKALAR-RGHRVMVVAPHYGNYAE-PQ---DTG---IRKRY-RVDRQDIEVAYFQAY 351 (632)
Q Consensus 281 L~It~e~~P~~~~GGlg~~v~~LakaLak-rGheV~VVtP~y~~~~~-~~---dig---~r~~~-~i~g~~~~v~v~~~~ 351 (632)
.-+++|... ++||+-+++..-++.+++ .|-++.+|.|....... .. +.. +.... .....-.+|.+=+..
T Consensus 5 fE~swEV~N--KVGGIyTVi~tka~~~~~~~~d~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~g~~v~~GrW~ 82 (590)
T cd03793 5 FEVAWEVAN--KVGGIYTVIKSKAPVTVEEWGDRYCLIGPYNEAKARTEVEILEPPNPALRQALDRMRSRGIKVHFGRWL 82 (590)
T ss_pred EEEeehhhc--cCCCeeeeeecCcHHHHHHhCCeEEEECCCCccccCCccccCCCCchHHHHHHHHHHhCCCeEEEeEEE
Confidence 346777666 799999999999998766 59999999997542110 00 000 00000 001112233344445
Q ss_pred ECCeE-EEEecCccccccCC-------------CCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCc
Q 006770 352 IDGVD-FVFLDSPLFRHLGN-------------NIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDW 417 (632)
Q Consensus 352 ~dGV~-v~~I~~p~~~~~~~-------------~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw 417 (632)
++|-+ ++.++...++...+ .+.+.. .+....+|..++..++..+... ....++||+|+|+|
T Consensus 83 i~G~P~viL~D~~~~~~~~~~~~~~lW~~~~i~s~~~~~---d~nea~~fgy~~~~~i~~~~~~--~~~~~~dViH~HeW 157 (590)
T cd03793 83 IEGYPKVVLFDIGSAAWKLDEWKGELWELCGIGSPEGDR---ETNDAIIFGFLVAWFLGEFAEQ--FDDEPAVVAHFHEW 157 (590)
T ss_pred cCCCCeEEEEeCchhhhhHHHHHHHHHHHcCCCCCCCCC---cchHHHHHHHHHHHHHHHHHhh--ccCCCCeEEEEcch
Confidence 66655 44445433321101 111111 1122233444444444321100 01347999999999
Q ss_pred chhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCC--CCC-ccccCCCCcccccccc-ccCCCCchhHHHHHHHhhcC
Q 006770 418 HTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRG--PVS-DFVYTDLPGHYLDLFK-LYDPVGGEHFNIFAAGLKTA 493 (632)
Q Consensus 418 ~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~--p~~-~l~~~glp~~~~~~l~-~~~p~~g~~~~i~r~~l~~A 493 (632)
+++.++.+++.. ..++|+|+|+|.+.. |+. .-. .+ +..+. . ++.-+ ...-...+...+|+.+...|
T Consensus 158 m~g~a~~~lK~~------~~~VptVfTtHAT~~-GR~l~~g~~~~-y~~l~-~-~~~d~eA~~~~I~~r~~iE~~aa~~A 227 (590)
T cd03793 158 QAGVGLPLLRKR------KVDVSTIFTTHATLL-GRYLCAGNVDF-YNNLD-Y-FDVDKEAGKRGIYHRYCIERAAAHCA 227 (590)
T ss_pred hHhHHHHHHHHh------CCCCCEEEEeccccc-ccccccCCccc-chhhh-h-cchhhhhhcccchHHHHHHHHHHhhC
Confidence 999998888742 358999999997632 332 110 00 00000 0 00000 00000012356888999999
Q ss_pred CeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHH-----
Q 006770 494 DRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCK----- 568 (632)
Q Consensus 494 D~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k----- 568 (632)
|+|||||+.+++|+... + +.++++ |||||||.+.|.+..+ |. + -+..+|
T Consensus 228 d~fttVS~it~~E~~~L-l--------~~~pd~--ViPNGid~~~f~~~~e----------~~--~---~~~~~k~ki~~ 281 (590)
T cd03793 228 HVFTTVSEITAYEAEHL-L--------KRKPDV--VLPNGLNVKKFSALHE----------FQ--N---LHAQSKEKINE 281 (590)
T ss_pred CEEEECChHHHHHHHHH-h--------CCCCCE--EeCCCcchhhcccchh----------hh--h---hhHHhhhhhhH
Confidence 99999999999998863 2 235565 9999999999976421 10 0 011222
Q ss_pred ---HHHHHHhCCCCCCCCcEEEE-EcCCcc-ccCHHHHHHHHhhccC
Q 006770 569 ---AALQREFGLPVRDDVPVIGF-IGRLDH-QKGVDLIAEAIPWMMG 610 (632)
Q Consensus 569 ---~~Lrk~lGL~~~~d~pvIlf-VGRL~~-qKGvdlLLeA~~~L~~ 610 (632)
..++.+++++ ++.++++| +||+.. +||+|+||+|+++|..
T Consensus 282 f~~~~~~~~~~~~--~d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~ 326 (590)
T cd03793 282 FVRGHFYGHYDFD--LDKTLYFFTAGRYEFSNKGADMFLEALARLNY 326 (590)
T ss_pred HHHHHHhhhcCCC--CCCeEEEEEeeccccccCCHHHHHHHHHHHHH
Confidence 2245556765 46788888 799998 9999999999999764
No 39
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.71 E-value=5.8e-16 Score=158.82 Aligned_cols=233 Identities=19% Similarity=0.128 Sum_probs=154.5
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++++..+.+ ||.+.++..|+++|.+.||+|.+++......... . ....|++++
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~--~-------------------~~~~~i~v~ 55 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTDRGELGE--E-------------------LEEAGVPVY 55 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCcchhhhH--H-------------------HHhcCCeEE
Confidence 68999887543 9999999999999999999999998643221100 0 011355555
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~ 438 (632)
.+..+.. ... +.. ...+.++++ ..+||+||+|.++..+.+..+... ..+
T Consensus 56 ~~~~~~~------~~~------~~~----~~~~~~~~~---------~~~~div~~~~~~~~~~~~~~~~~------~~~ 104 (365)
T cd03807 56 CLGKRPG------RPD------PGA----LLRLYKLIR---------RLRPDVVHTWMYHADLYGGLAARL------AGV 104 (365)
T ss_pred EEecccc------ccc------HHH----HHHHHHHHH---------hhCCCEEEeccccccHHHHHHHHh------cCC
Confidence 5543211 000 001 112233343 247999999987766555444321 147
Q ss_pred CeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcccc
Q 006770 439 TRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHN 518 (632)
Q Consensus 439 iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~ 518 (632)
+|+|+++|+...... +..... ...+.+.....+|.++++|+...+.+... |+
T Consensus 105 ~~~i~~~~~~~~~~~---------~~~~~~-------------~~~~~~~~~~~~~~~i~~s~~~~~~~~~~--~~---- 156 (365)
T cd03807 105 PPVIWGIRHSDLDLG---------KKSTRL-------------VARLRRLLSSFIPLIVANSAAAAEYHQAI--GY---- 156 (365)
T ss_pred CcEEEEecCCccccc---------chhHhH-------------HHHHHHHhccccCeEEeccHHHHHHHHHc--CC----
Confidence 899999999633200 000000 12234455678999999999888776642 22
Q ss_pred ccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCH
Q 006770 519 IINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGV 598 (632)
Q Consensus 519 il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGv 598 (632)
+..++.+|+||+|...|.+.. ..+..++++++++ ++.++|+|+||+.++||+
T Consensus 157 ----~~~~~~vi~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~--~~~~~i~~~G~~~~~K~~ 208 (365)
T cd03807 157 ----PPKKIVVIPNGVDTERFSPDL----------------------DARARLREELGLP--EDTFLIGIVARLHPQKDH 208 (365)
T ss_pred ----ChhheeEeCCCcCHHhcCCcc----------------------cchHHHHHhcCCC--CCCeEEEEecccchhcCH
Confidence 567899999999988776531 1123456788887 367899999999999999
Q ss_pred HHHHHHHhhccC--CCcEEEEEecChh
Q 006770 599 DLIAEAIPWMMG--QDVQLSHVGHWQT 623 (632)
Q Consensus 599 dlLLeA~~~L~~--~dvqLVI~G~G~~ 623 (632)
+.+++|+..+.+ .+++|+|+|.|+.
T Consensus 209 ~~li~a~~~l~~~~~~~~l~i~G~~~~ 235 (365)
T cd03807 209 ATLLRAAALLLKKFPNARLLLVGDGPD 235 (365)
T ss_pred HHHHHHHHHHHHhCCCeEEEEecCCcc
Confidence 999999998875 4899999999863
No 40
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.71 E-value=1e-15 Score=157.64 Aligned_cols=246 Identities=23% Similarity=0.253 Sum_probs=146.5
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++|+..++| ..||.+.++.+|+++|.++||+|+|+++......... . ...+...
T Consensus 1 kIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~---------------------~~~~~~~ 56 (375)
T cd03821 1 KILHVIPSFDP--KYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLV-A---------------------LNGVPVK 56 (375)
T ss_pred CeEEEcCCCCc--ccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchh-h---------------------ccCceee
Confidence 79999998876 5899999999999999999999999997644321100 0 0000000
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCc-chhHHHHHHHHHhhhcCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDW-HTALLPVYLKAYYRDNGLMQ 437 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw-~sallp~~l~~~~~~~~~~~ 437 (632)
........ ... .... .+........... ..++|+||+|+. ....... +.. .+ ..
T Consensus 57 ~~~~~~~~-----~~~------~~~~-~~~~~~~~~~~~~-------~~~~dii~~~~~~~~~~~~~-~~~-~~----~~ 111 (375)
T cd03821 57 LFSINVAY-----GLN------LARY-LFPPSLLAWLRLN-------IREADIVHVHGLWSYPSLAA-ARA-AR----KY 111 (375)
T ss_pred ecccchhh-----hhh------hhhh-ccChhHHHHHHHh-------CCCCCEEEEecccchHHHHH-HHH-HH----Hh
Confidence 00000000 000 0000 0000001111111 357999999973 3222221 111 11 24
Q ss_pred CCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccc
Q 006770 438 YTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLH 517 (632)
Q Consensus 438 ~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~ 517 (632)
++|+|+++|+.......+.. .+ ... ++ .....+..+..++.|+++|......+... +
T Consensus 112 ~~~~i~~~~~~~~~~~~~~~-----~~----~~~--~~------~~~~~~~~~~~~~~i~~~s~~~~~~~~~~--~---- 168 (375)
T cd03821 112 GIPYVVSPHGMLDPWALPHK-----AL----KKR--LA------WFLFERRLLQAAAAVHATSEQEAAEIRRL--G---- 168 (375)
T ss_pred CCCEEEEccccccccccccc-----hh----hhH--HH------HHHHHHHHHhcCCEEEECCHHHHHHHHhh--C----
Confidence 78999999985221100000 00 000 00 12234556778999999997766555431 1
Q ss_pred cccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccC
Q 006770 518 NIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKG 597 (632)
Q Consensus 518 ~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKG 597 (632)
...++.+||||+|.+.|.+... .. .+++++.+ .+.++|+|+||+.++||
T Consensus 169 -----~~~~~~vi~~~~~~~~~~~~~~-----------------------~~-~~~~~~~~--~~~~~i~~~G~~~~~K~ 217 (375)
T cd03821 169 -----LKAPIAVIPNGVDIPPFAALPS-----------------------RG-RRRKFPIL--PDKRIILFLGRLHPKKG 217 (375)
T ss_pred -----CcccEEEcCCCcChhccCcchh-----------------------hh-hhhhccCC--CCCcEEEEEeCcchhcC
Confidence 4678999999999988865310 00 14555554 46789999999999999
Q ss_pred HHHHHHHHhhccC--CCcEEEEEecChhhHHH
Q 006770 598 VDLIAEAIPWMMG--QDVQLSHVGHWQTRFGR 627 (632)
Q Consensus 598 vdlLLeA~~~L~~--~dvqLVI~G~G~~~le~ 627 (632)
++.+++|+..+.+ .+++|+|+|.++..+..
T Consensus 218 ~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~ 249 (375)
T cd03821 218 LDLLIEAFAKLAERFPDWHLVIAGPDEGGYRA 249 (375)
T ss_pred HHHHHHHHHHhhhhcCCeEEEEECCCCcchHH
Confidence 9999999999886 48999999998654433
No 41
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.71 E-value=1.9e-15 Score=155.92 Aligned_cols=259 Identities=22% Similarity=0.233 Sum_probs=157.1
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++|+..++|. .||.+.++..|+++|+++||+|+++++........... . ......++++++
T Consensus 1 kIl~i~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~----~-----------~~~~~~~~~~~~ 63 (394)
T cd03794 1 KILILSQYFPPE--LGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYK----G-----------YKREEVDGVRVH 63 (394)
T ss_pred CEEEEecccCCc--cCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccc----c-----------ceEEecCCeEEE
Confidence 799999988774 49999999999999999999999999764332111000 0 011244677776
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcch-hHHHHHHHHHhhhcCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHT-ALLPVYLKAYYRDNGLMQ 437 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~s-allp~~l~~~~~~~~~~~ 437 (632)
.+....... ...+ ..+.....+.......+.. . ..+||+||+|.+.. ...+.+... . ..
T Consensus 64 ~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~-~------~~~~D~v~~~~~~~~~~~~~~~~~--~----~~ 123 (394)
T cd03794 64 RVPLPPYKK--NGLL-----KRLLNYLSFALSALLALLK-R------RRRPDVIIATSPPLLIALAALLLA--R----LK 123 (394)
T ss_pred EEecCCCCc--cchH-----HHHHhhhHHHHHHHHHHHh-c------ccCCCEEEEcCChHHHHHHHHHHH--H----hc
Confidence 664322110 0010 1111122222222222221 1 35899999997332 222221111 1 24
Q ss_pred CCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccc
Q 006770 438 YTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLH 517 (632)
Q Consensus 438 ~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~ 517 (632)
++|+|+++|+... ..... .+..........+ ...+++..++.+|.|+++|+..++.+.. .+ +
T Consensus 124 ~~~~i~~~h~~~~-----~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~d~vi~~s~~~~~~~~~--~~--~- 185 (394)
T cd03794 124 GAPFVLEVRDLWP-----ESAVA-LGLLKNGSLLYRL-------LRKLERLIYRRADAIVVISPGMREYLVR--RG--V- 185 (394)
T ss_pred CCCEEEEehhhcc-----hhHHH-ccCccccchHHHH-------HHHHHHHHHhcCCEEEEECHHHHHHHHh--cC--C-
Confidence 7899999999521 11000 0000000000000 1345677889999999999999887762 22 1
Q ss_pred cccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccC
Q 006770 518 NIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKG 597 (632)
Q Consensus 518 ~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKG 597 (632)
+..++.+|+||+|...+.+... .. . ++++... .+.++|+|+||+.++||
T Consensus 186 -----~~~~~~~i~~~~~~~~~~~~~~--------------------~~---~-~~~~~~~--~~~~~i~~~G~~~~~k~ 234 (394)
T cd03794 186 -----PPEKISVIPNGVDLELFKPPPA--------------------DE---S-LRKELGL--DDKFVVLYAGNIGRAQG 234 (394)
T ss_pred -----CcCceEEcCCCCCHHHcCCccc--------------------hh---h-hhhccCC--CCcEEEEEecCcccccC
Confidence 5678999999999877655311 00 0 2233332 36789999999999999
Q ss_pred HHHHHHHHhhccCC-CcEEEEEecChh
Q 006770 598 VDLIAEAIPWMMGQ-DVQLSHVGHWQT 623 (632)
Q Consensus 598 vdlLLeA~~~L~~~-dvqLVI~G~G~~ 623 (632)
++.+++|+..+.+. +++|+|+|+|+.
T Consensus 235 ~~~l~~~~~~l~~~~~~~l~i~G~~~~ 261 (394)
T cd03794 235 LDTLLEAAALLKDRPDIRFLIVGDGPE 261 (394)
T ss_pred HHHHHHHHHHHhhcCCeEEEEeCCccc
Confidence 99999999998765 899999999863
No 42
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.70 E-value=1.4e-15 Score=156.78 Aligned_cols=239 Identities=22% Similarity=0.268 Sum_probs=148.3
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++++..|+|. .||.+.++.+|+++|.++||+|.|+++......... ...++...
T Consensus 1 kil~~~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~----------------------~~~~~~~~ 56 (374)
T cd03817 1 KIGIFTDTYLPQ--VNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEE----------------------EVVVVRPF 56 (374)
T ss_pred CeeEeehhccCC--CCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccc----------------------cccccccc
Confidence 799999998884 799999999999999999999999998755422110 00011110
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcch-hHHHHHHHHHhhhcCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHT-ALLPVYLKAYYRDNGLMQ 437 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~s-allp~~l~~~~~~~~~~~ 437 (632)
.+...... . .. ..+ .+.......++ ..+||+||+|.... +..+..+.. ..
T Consensus 57 ~~~~~~~~---~-~~--------~~~-~~~~~~~~~~~---------~~~~Div~~~~~~~~~~~~~~~~~-------~~ 107 (374)
T cd03817 57 RVPTFKYP---D-FR--------LPL-PIPRALIIILK---------ELGPDIVHTHTPFSLGLLGLRVAR-------KL 107 (374)
T ss_pred ccccchhh---h-hh--------ccc-cHHHHHHHHHh---------hcCCCEEEECCchhhhhHHHHHHH-------Hc
Confidence 00000000 0 00 000 01111222233 35899999997433 222222221 25
Q ss_pred CCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhH-HHHHHHhhcCCeEEEechhHHHHHHHhhcCCcc
Q 006770 438 YTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHF-NIFAAGLKTADRVVTVSRGYSWELKTAEGGWGL 516 (632)
Q Consensus 438 ~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~-~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL 516 (632)
++|+|+++|+.... ............. .... .+++..+..||.|+++|+..++.+.. ++
T Consensus 108 ~~~~i~~~~~~~~~------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~--~~--- 167 (374)
T cd03817 108 GIPVVATYHTMYED------YTHYVPLGRLLAR---------AVVRRKLSRRFYNRCDAVIAPSEKIADLLRE--YG--- 167 (374)
T ss_pred CCCEEEEecCCHHH------HHHHHhcccchhH---------HHHHHHHHHHHhhhCCEEEeccHHHHHHHHh--cC---
Confidence 78999999985210 0000000000000 0011 35667788999999999988777654 22
Q ss_pred ccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCcccc
Q 006770 517 HNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQK 596 (632)
Q Consensus 517 ~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qK 596 (632)
...++.+|+||+|...|.+.. ....++++++. .+.++|+|+||+.++|
T Consensus 168 ------~~~~~~vi~~~~~~~~~~~~~------------------------~~~~~~~~~~~--~~~~~i~~~G~~~~~k 215 (374)
T cd03817 168 ------VKRPIEVIPTGIDLDRFEPVD------------------------GDDERRKLGIP--EDEPVLLYVGRLAKEK 215 (374)
T ss_pred ------CCCceEEcCCccchhccCccc------------------------hhHHHHhcCCC--CCCeEEEEEeeeeccc
Confidence 235699999999998776531 01124556665 3678999999999999
Q ss_pred CHHHHHHHHhhccC--CCcEEEEEecCh
Q 006770 597 GVDLIAEAIPWMMG--QDVQLSHVGHWQ 622 (632)
Q Consensus 597 GvdlLLeA~~~L~~--~dvqLVI~G~G~ 622 (632)
|++.+++|+..+.. .+++|+++|.|+
T Consensus 216 ~~~~l~~~~~~~~~~~~~~~l~i~G~~~ 243 (374)
T cd03817 216 NIDFLIRAFARLLKEEPDVKLVIVGDGP 243 (374)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEeCCc
Confidence 99999999999876 589999999987
No 43
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.70 E-value=5.5e-16 Score=165.78 Aligned_cols=229 Identities=17% Similarity=0.129 Sum_probs=136.9
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++++..+ ..||++.++.+|+++|.+.||+|+++++...... ... ...+ .....|.++
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~--~~~--~~~~------------~~~~~g~~~- 59 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEF--FNV--TKKF------------HNALQGADI- 59 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecCCChhH--HHH--HHHh------------hHhhcCCCC-
Confidence 689998763 3699999999999999999999999987432100 000 0000 000112221
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~ 438 (632)
.++ .. .+..+ .......+.... ...+|||||+|+++...++.+. + ..+
T Consensus 60 ~~~-----------------~~-~~~~~-~~~~~~~~~~~~-----~~~~~Dvv~~h~~~~~~~~~~~----~----~~~ 107 (372)
T cd03792 60 ELS-----------------EE-EKEIY-LEWNEENAERPL-----LDLDADVVVIHDPQPLALPLFK----K----KRG 107 (372)
T ss_pred CCC-----------------HH-HHHHH-HHHHHHHhcccc-----ccCCCCEEEECCCCchhHHHhh----h----cCC
Confidence 000 00 00111 110111111000 1358999999988743332211 1 237
Q ss_pred CeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcccc
Q 006770 439 TRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHN 518 (632)
Q Consensus 439 iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~ 518 (632)
+|+|++.|+.... + . .. ...+.+..+..+|.+++.|..++ . .+ +
T Consensus 108 ~~~i~~~H~~~~~---~---~------~~--------------~~~~~~~~~~~~d~~i~~~~~~~----~--~~--~-- 151 (372)
T cd03792 108 RPWIWRCHIDLSS---P---N------RR--------------VWDFLQPYIEDYDAAVFHLPEYV----P--PQ--V-- 151 (372)
T ss_pred CeEEEEeeeecCC---C---c------HH--------------HHHHHHHHHHhCCEEeecHHHhc----C--CC--C--
Confidence 8999999984210 0 0 00 12234556678999998884332 1 11 1
Q ss_pred ccccCCCcEEEeeCCCcCCC-CCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccC
Q 006770 519 IINEVDWKLSGIVNGIDTKE-WSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKG 597 (632)
Q Consensus 519 il~~~~~Ki~vIpNGID~~~-F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKG 597 (632)
...++ +||||||... +... + .+..+..+++++|++ ++.++|+++||++++||
T Consensus 152 ----~~~~~-vipngvd~~~~~~~~------------~--------~~~~~~~~~~~~~~~--~~~~~i~~vgrl~~~Kg 204 (372)
T cd03792 152 ----PPRKV-IIPPSIDPLSGKNRE------------L--------SPADIEYILEKYGID--PERPYITQVSRFDPWKD 204 (372)
T ss_pred ----CCceE-EeCCCCCCCccccCC------------C--------CHHHHHHHHHHhCCC--CCCcEEEEEeccccccC
Confidence 33455 9999999643 2111 1 122345577889987 37899999999999999
Q ss_pred HHHHHHHHhhccC--CCcEEEEEecChh
Q 006770 598 VDLIAEAIPWMMG--QDVQLSHVGHWQT 623 (632)
Q Consensus 598 vdlLLeA~~~L~~--~dvqLVI~G~G~~ 623 (632)
++.|++|++.+.+ .+++|+|+|+|+.
T Consensus 205 ~~~ll~a~~~l~~~~~~~~l~i~G~g~~ 232 (372)
T cd03792 205 PFGVIDAYRKVKERVPDPQLVLVGSGAT 232 (372)
T ss_pred cHHHHHHHHHHHhhCCCCEEEEEeCCCC
Confidence 9999999998875 4899999999863
No 44
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.68 E-value=4.5e-15 Score=152.88 Aligned_cols=233 Identities=23% Similarity=0.152 Sum_probs=140.6
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||+++++.++|. ..||.+.++..|+++|+++||+|+|+++........... .+...+
T Consensus 1 kIl~i~~~~~~~-~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~----------------------~~~~~~ 57 (359)
T cd03823 1 RILVVNHLYPPR-SVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEV----------------------IGVVVY 57 (359)
T ss_pred CeeEEcccCCcc-cccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCccccc----------------------ccceee
Confidence 799999988885 579999999999999999999999999764332111000 000000
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~ 438 (632)
........ ........+.........+...+.+++. ..+||+||+|.+.....+. +.. .+ ..+
T Consensus 58 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~dii~~~~~~~~~~~~-~~~-~~----~~~ 120 (359)
T cd03823 58 GRPIDEVL--RSALPRDLFHLSDYDNPAVVAEFARLLE---------DFRPDVVHFHHLQGLGVSI-LRA-AR----DRG 120 (359)
T ss_pred cccccccc--CCCchhhhhHHHhccCHHHHHHHHHHHH---------HcCCCEEEECCccchHHHH-HHH-HH----hcC
Confidence 00000000 0000000000000000011222333343 3589999999864322222 211 11 246
Q ss_pred CeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcccc
Q 006770 439 TRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHN 518 (632)
Q Consensus 439 iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~ 518 (632)
+|+|+++|+.... ++.. . ......|.++++|+..++.+... +.
T Consensus 121 ~~~i~~~hd~~~~--~~~~--------------------------~---~~~~~~d~ii~~s~~~~~~~~~~--~~---- 163 (359)
T cd03823 121 IPIVLTLHDYWLI--CPRQ--------------------------G---LFKKGGDAVIAPSRFLLDRYVAN--GL---- 163 (359)
T ss_pred CCEEEEEeeeeee--cchh--------------------------h---hhccCCCEEEEeCHHHHHHHHHc--CC----
Confidence 8999999984211 0000 0 00122399999999988877642 21
Q ss_pred ccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCH
Q 006770 519 IINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGV 598 (632)
Q Consensus 519 il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGv 598 (632)
...++.+|+||+|...+.+... +.+ .+.++|+|+||+.++||+
T Consensus 164 ----~~~~~~vi~n~~~~~~~~~~~~-------------------------------~~~--~~~~~i~~~G~~~~~k~~ 206 (359)
T cd03823 164 ----FAEKISVIRNGIDLDRAKRPRR-------------------------------APP--GGRLRFGFIGQLTPHKGV 206 (359)
T ss_pred ----CccceEEecCCcChhhcccccc-------------------------------CCC--CCceEEEEEecCccccCH
Confidence 2468999999999987654210 111 356789999999999999
Q ss_pred HHHHHHHhhccCCCcEEEEEecChhhH
Q 006770 599 DLIAEAIPWMMGQDVQLSHVGHWQTRF 625 (632)
Q Consensus 599 dlLLeA~~~L~~~dvqLVI~G~G~~~l 625 (632)
+.+++|+..+.+.+++|+++|.|+...
T Consensus 207 ~~li~~~~~l~~~~~~l~i~G~~~~~~ 233 (359)
T cd03823 207 DLLLEAFKRLPRGDIELVIVGNGLELE 233 (359)
T ss_pred HHHHHHHHHHHhcCcEEEEEcCchhhh
Confidence 999999999876689999999987543
No 45
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.67 E-value=2.4e-15 Score=160.55 Aligned_cols=225 Identities=15% Similarity=0.130 Sum_probs=136.8
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCe
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARR--GHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGV 355 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakr--GheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV 355 (632)
|||+++++. .| ..||+++++..|+++|.++ ||+|.++++........ . . .. .+. .....+
T Consensus 1 mkI~~~~~~-~~--~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~--~--~-~~---------~~~-~~~~~~ 62 (359)
T PRK09922 1 MKIAFIGEA-VS--GFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAW--L--K-EI---------KYA-QSFSNI 62 (359)
T ss_pred CeeEEeccc-cc--CCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHH--H--H-hc---------chh-cccccc
Confidence 899999874 44 3599999999999999999 89999999754321100 0 0 00 000 000001
Q ss_pred EEEEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCC
Q 006770 356 DFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGL 435 (632)
Q Consensus 356 ~v~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~ 435 (632)
.+ . .+. .... .+.+.++++ ..+|||||+|+..+.+++..++...
T Consensus 63 ~~---~----------~~~--~~~~-------~~~l~~~l~---------~~~~Dii~~~~~~~~~~~~~~~~~~----- 106 (359)
T PRK09922 63 KL---S----------FLR--RAKH-------VYNFSKWLK---------ETQPDIVICIDVISCLYANKARKKS----- 106 (359)
T ss_pred hh---h----------hhc--ccHH-------HHHHHHHHH---------hcCCCEEEEcCHHHHHHHHHHHHHh-----
Confidence 00 0 000 0011 112223444 3589999999765544444333321
Q ss_pred CCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCc
Q 006770 436 MQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWG 515 (632)
Q Consensus 436 ~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~g 515 (632)
....+++.+.|... +.. .. ..+ ..+..+|.++++|+..++.+.. +|
T Consensus 107 ~~~~~~~~~~h~~~-----~~~---------~~--------------~~~--~~~~~~d~~i~~S~~~~~~~~~--~~-- 152 (359)
T PRK09922 107 GKQFKIFSWPHFSL-----DHK---------KH--------------AEC--KKITCADYHLAISSGIKEQMMA--RG-- 152 (359)
T ss_pred CCCCeEEEEecCcc-----ccc---------ch--------------hhh--hhhhcCCEEEEcCHHHHHHHHH--cC--
Confidence 12345676677521 000 00 001 1136799999999999888864 23
Q ss_pred cccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCc--
Q 006770 516 LHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLD-- 593 (632)
Q Consensus 516 L~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~-- 593 (632)
+ +..++.+|+||||.+.|.... +...+.++|+|+||+.
T Consensus 153 ~------~~~ki~vi~N~id~~~~~~~~----------------------------------~~~~~~~~i~~~Grl~~~ 192 (359)
T PRK09922 153 I------SAQRISVIYNPVEIKTIIIPP----------------------------------PERDKPAVFLYVGRLKFE 192 (359)
T ss_pred C------CHHHEEEEcCCCCHHHccCCC----------------------------------cccCCCcEEEEEEEEecc
Confidence 2 456899999999975542110 0012467899999996
Q ss_pred cccCHHHHHHHHhhccCCCcEEEEEecCh--hhHHHHHHh
Q 006770 594 HQKGVDLIAEAIPWMMGQDVQLSHVGHWQ--TRFGRDAEE 631 (632)
Q Consensus 594 ~qKGvdlLLeA~~~L~~~dvqLVI~G~G~--~~le~~lke 631 (632)
++||++.+++|++.+. .+++|+|+|+|+ ..+++.+++
T Consensus 193 ~~k~~~~l~~a~~~~~-~~~~l~ivG~g~~~~~l~~~~~~ 231 (359)
T PRK09922 193 GQKNVKELFDGLSQTT-GEWQLHIIGDGSDFEKCKAYSRE 231 (359)
T ss_pred cCcCHHHHHHHHHhhC-CCeEEEEEeCCccHHHHHHHHHH
Confidence 4699999999999875 489999999997 456665554
No 46
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.66 E-value=5.5e-15 Score=171.00 Aligned_cols=269 Identities=14% Similarity=0.077 Sum_probs=148.1
Q ss_pred CCCCCCCCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCC------------eEEEEccCC-C-CCCCCCCcccce
Q 006770 269 PPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGH------------RVMVVAPHY-G-NYAEPQDTGIRK 334 (632)
Q Consensus 269 ~~~~~~~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGh------------eV~VVtP~y-~-~~~~~~dig~r~ 334 (632)
+||+... -||+++.... ..||++.++.+|+.+|.+++. +|.|++... . ...... ..
T Consensus 275 ~~~~~~~--~rIl~vi~sl----~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~----~~ 344 (694)
T PRK15179 275 AGPESFV--GPVLMINGSL----GAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFF----AA 344 (694)
T ss_pred CCCCCCc--ceEEEEeCCC----CCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchH----HH
Confidence 6676553 4899998763 569999999999999999954 344444211 0 000000 00
Q ss_pred eeeecCccceEEEEEEEECCeEEEEecCcc-cccc-CC---CCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCc
Q 006770 335 RYRVDRQDIEVAYFQAYIDGVDFVFLDSPL-FRHL-GN---NIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGN 409 (632)
Q Consensus 335 ~~~i~g~~~~v~v~~~~~dGV~v~~I~~p~-~~~~-~~---~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~p 409 (632)
.....||+++.+.... .... .. ..+.....+.........+.+.++++. .+|
T Consensus 345 --------------~L~~~Gv~v~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~---------~kp 401 (694)
T PRK15179 345 --------------TLADAGIPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRS---------SVP 401 (694)
T ss_pred --------------HHHhCCCeEEEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHH---------cCC
Confidence 0112456665553211 0000 00 000000000000111223445555653 589
Q ss_pred cEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEE-EEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHH
Q 006770 410 LVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLL-VIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAA 488 (632)
Q Consensus 410 DIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~-TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~ 488 (632)
||||+|...+.+++.++.. ..++|+|+ |.|+.... .. +..+ ++ .......
T Consensus 402 DIVH~h~~~a~~lg~lAa~-------~~gvPvIv~t~h~~~~~-~~----------~~~~----~~-------~~~~l~~ 452 (694)
T PRK15179 402 SVVHIWQDGSIFACALAAL-------LAGVPRIVLSVRTMPPV-DR----------PDRY----RV-------EYDIIYS 452 (694)
T ss_pred cEEEEeCCcHHHHHHHHHH-------HcCCCEEEEEeCCCccc-cc----------hhHH----HH-------HHHHHHH
Confidence 9999998877666554443 24678766 66764210 00 0000 00 0011111
Q ss_pred Hhhc--CCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchH
Q 006770 489 GLKT--ADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQ 566 (632)
Q Consensus 489 ~l~~--AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~ 566 (632)
.+.. ++.++++|...++.+... +|+ +..++.+||||||...|.|...
T Consensus 453 ~l~~~~~~i~Vs~S~~~~~~l~~~-~g~--------~~~kI~VI~NGVd~~~f~~~~~---------------------- 501 (694)
T PRK15179 453 ELLKMRGVALSSNSQFAAHRYADW-LGV--------DERRIPVVYNGLAPLKSVQDDA---------------------- 501 (694)
T ss_pred HHHhcCCeEEEeCcHHHHHHHHHH-cCC--------ChhHEEEECCCcCHHhcCCCch----------------------
Confidence 2233 345566666666666542 332 6789999999999887765310
Q ss_pred HHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC--CCcEEEEEecCh--hhHHHHHHh
Q 006770 567 CKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG--QDVQLSHVGHWQ--TRFGRDAEE 631 (632)
Q Consensus 567 ~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~--~dvqLVI~G~G~--~~le~~lke 631 (632)
.+. .+..+.....++.++|+++||+.++||++.|++|++.+.+ .+++|+|+|+|+ ..+++++++
T Consensus 502 ~~~-~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~ 569 (694)
T PRK15179 502 CTA-MMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQR 569 (694)
T ss_pred hhH-HHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHH
Confidence 000 0111221112356799999999999999999999998875 489999999997 456666654
No 47
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.65 E-value=1.8e-14 Score=149.98 Aligned_cols=219 Identities=17% Similarity=0.031 Sum_probs=141.2
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++++..|+| |.+.++.+++++|.++||+|+|+++.........+. . ...+..+.
T Consensus 1 ki~~~~~~~~~-----~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~-----~--------------~~~~~~~~ 56 (355)
T cd03799 1 KIAYLVKEFPR-----LSETFILREILALEAAGHEVEIFSLRPPEDTLVHPE-----D--------------RAELARTR 56 (355)
T ss_pred CEEEECCCCCC-----cchHHHHHHHHHHHhCCCeEEEEEecCccccccccc-----c--------------cccccchH
Confidence 69999987544 378999999999999999999999765432110000 0 00000000
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~ 438 (632)
|. ........+...+.+.++ ..++|+||+|.+.......++... ..+
T Consensus 57 --------------~~----~~~~~~~~~~~~~~~~~~---------~~~~Dii~~~~~~~~~~~~~~~~~------~~~ 103 (355)
T cd03799 57 --------------YL----ARSLALLAQALVLARELR---------RLGIDHIHAHFGTTPATVAMLASR------LGG 103 (355)
T ss_pred --------------HH----HHHHHHHHHHHHHHHHHH---------hcCCCEEEECCCCchHHHHHHHHH------hcC
Confidence 00 000111112222233333 247999999976543333333221 247
Q ss_pred CeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcccc
Q 006770 439 TRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHN 518 (632)
Q Consensus 439 iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~ 518 (632)
+|+++|+|+...... . ...+++..++.+|.|+++|+..++.+.+. +|.
T Consensus 104 ~~~~~~~~~~~~~~~---~------------------------~~~~~~~~~~~~~~vi~~s~~~~~~l~~~-~~~---- 151 (355)
T cd03799 104 IPYSFTAHGKDIFRS---P------------------------DAIDLDEKLARADFVVAISEYNRQQLIRL-LGC---- 151 (355)
T ss_pred CCEEEEEeccccccc---C------------------------chHHHHHHHhhCCEEEECCHHHHHHHHHh-cCC----
Confidence 899999998432100 0 01245667789999999999999888753 221
Q ss_pred ccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCH
Q 006770 519 IINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGV 598 (632)
Q Consensus 519 il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGv 598 (632)
...++.+|+||+|.+.|.+.. ... ..+.+.|+|+||+.++||+
T Consensus 152 ----~~~~~~vi~~~~d~~~~~~~~-------------------------------~~~--~~~~~~i~~~g~~~~~k~~ 194 (355)
T cd03799 152 ----DPDKIHVVHCGVDLERFPPRP-------------------------------PPP--PGEPLRILSVGRLVEKKGL 194 (355)
T ss_pred ----CcccEEEEeCCcCHHHcCCcc-------------------------------ccc--cCCCeEEEEEeeeccccCH
Confidence 567899999999988775431 000 1246789999999999999
Q ss_pred HHHHHHHhhccCC--CcEEEEEecChh
Q 006770 599 DLIAEAIPWMMGQ--DVQLSHVGHWQT 623 (632)
Q Consensus 599 dlLLeA~~~L~~~--dvqLVI~G~G~~ 623 (632)
+.+++|+..+... +++|+|+|.|+.
T Consensus 195 ~~l~~~~~~l~~~~~~~~l~i~G~~~~ 221 (355)
T cd03799 195 DYLLEALALLKDRGIDFRLDIVGDGPL 221 (355)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEECCcc
Confidence 9999999998763 899999999873
No 48
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.65 E-value=8.5e-15 Score=151.43 Aligned_cols=236 Identities=20% Similarity=0.167 Sum_probs=144.7
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++|+..++|. .||.+.++..|+++|.++||+|.++++......... . ..+.+.
T Consensus 1 kIl~i~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~----------------------~~~~~~ 55 (364)
T cd03814 1 RIAIVTDTFLPQ--VNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGP-A----------------------RVVPVP 55 (364)
T ss_pred CeEEEecccCcc--ccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCC-C----------------------Cceeec
Confidence 799999988884 599999999999999999999999997643211100 0 011111
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchh-HHHHHHHHHhhhcCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTA-LLPVYLKAYYRDNGLMQ 437 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sa-llp~~l~~~~~~~~~~~ 437 (632)
.+..+.+... .+. ... . ....+.++ ..+||+||+|.+... .++..+. + ..
T Consensus 56 ~~~~~~~~~~---~~~---~~~---~----~~~~~~~~---------~~~pdii~~~~~~~~~~~~~~~~---~----~~ 106 (364)
T cd03814 56 SVPLPGYPEI---RLA---LPP---R----RRVRRLLD---------AFAPDVVHIATPGPLGLAALRAA---R----RL 106 (364)
T ss_pred ccccCcccce---Eec---ccc---h----hhHHHHHH---------hcCCCEEEEeccchhhHHHHHHH---H----Hc
Confidence 1111111000 000 000 0 01112222 358999999964332 2222221 1 25
Q ss_pred CCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccc
Q 006770 438 YTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLH 517 (632)
Q Consensus 438 ~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~ 517 (632)
++|+++++|+...+ . ..... .... ... ...+.+..++.+|.++++|+..++.+.. .
T Consensus 107 ~~~~i~~~~~~~~~-~-----~~~~~--~~~~---~~~------~~~~~~~~~~~~d~i~~~s~~~~~~~~~--~----- 162 (364)
T cd03814 107 GIPVVTSYHTDFPE-Y-----LRYYG--LGPL---SWL------AWAYLRWFHNRADRVLVPSPSLADELRA--R----- 162 (364)
T ss_pred CCCEEEEEecChHH-H-----hhhcc--cchH---hHh------hHHHHHHHHHhCCEEEeCCHHHHHHHhc--c-----
Confidence 79999999984211 0 00000 0000 000 1234566778999999999988874432 1
Q ss_pred cccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccC
Q 006770 518 NIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKG 597 (632)
Q Consensus 518 ~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKG 597 (632)
...++.+++||+|.+.|.|... +...+++++ + .+.++|+|+||+.+.||
T Consensus 163 -----~~~~~~~~~~g~~~~~~~~~~~-----------------------~~~~~~~~~-~--~~~~~i~~~G~~~~~k~ 211 (364)
T cd03814 163 -----GFRRVRLWPRGVDTELFHPRRR-----------------------DEALRARLG-P--PDRPVLLYVGRLAPEKN 211 (364)
T ss_pred -----CCCceeecCCCccccccCcccc-----------------------cHHHHHHhC-C--CCCeEEEEEeccccccC
Confidence 2457899999999988876421 012334455 2 35689999999999999
Q ss_pred HHHHHHHHhhccC-CCcEEEEEecChh
Q 006770 598 VDLIAEAIPWMMG-QDVQLSHVGHWQT 623 (632)
Q Consensus 598 vdlLLeA~~~L~~-~dvqLVI~G~G~~ 623 (632)
++.+++++..+.. .+++|+|+|.|+.
T Consensus 212 ~~~~i~~~~~l~~~~~~~l~i~G~~~~ 238 (364)
T cd03814 212 LEALLDADLPLRRRPPVRLVIVGDGPA 238 (364)
T ss_pred HHHHHHHHHHhhhcCCceEEEEeCCch
Confidence 9999999999876 3899999999864
No 49
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.64 E-value=4.6e-14 Score=143.52 Aligned_cols=238 Identities=30% Similarity=0.427 Sum_probs=149.7
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++++..++|. .||.+.++..|+++|.+.||+|.++++......... ........
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~----------------------~~~~~~~~ 56 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEE----------------------EVGGIVVV 56 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCcee----------------------eecCccee
Confidence 699999987774 799999999999999999999999997644321100 00000000
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~ 438 (632)
.. ... ...+. . .....+.......+. ..+||+||+|.+........+.. ..+
T Consensus 57 ~~--~~~----~~~~~-----~-~~~~~~~~~~~~~~~---------~~~~Dii~~~~~~~~~~~~~~~~-------~~~ 108 (374)
T cd03801 57 RP--PPL----LRVRR-----L-LLLLLLALRLRRLLR---------RERFDVVHAHDWLALLAAALAAR-------LLG 108 (374)
T ss_pred cC--Ccc----cccch-----h-HHHHHHHHHHHHHhh---------hcCCcEEEEechhHHHHHHHHHH-------hcC
Confidence 00 000 00000 0 011111122223333 35799999998776555432221 358
Q ss_pred CeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcccc
Q 006770 439 TRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHN 518 (632)
Q Consensus 439 iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~ 518 (632)
+|+|+++|+......... .... .. ....+.+..+..+|.++++|+..++.+... ++
T Consensus 109 ~~~i~~~h~~~~~~~~~~---------~~~~--~~-------~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~-~~----- 164 (374)
T cd03801 109 IPLVLTVHGLEFGRPGNE---------LGLL--LK-------LARALERRALRRADRIIAVSEATREELREL-GG----- 164 (374)
T ss_pred CcEEEEeccchhhccccc---------hhHH--HH-------HHHHHHHHHHHhCCEEEEecHHHHHHHHhc-CC-----
Confidence 899999999633211000 0000 00 012345667789999999999998887752 11
Q ss_pred ccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCH
Q 006770 519 IINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGV 598 (632)
Q Consensus 519 il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGv 598 (632)
....++.+|+||+|...|.+.. ...+...... .+.++|+|+||+.+.||+
T Consensus 165 ---~~~~~~~~i~~~~~~~~~~~~~-------------------------~~~~~~~~~~--~~~~~i~~~g~~~~~k~~ 214 (374)
T cd03801 165 ---VPPEKITVIPNGVDTERFRPAP-------------------------RAARRRLGIP--EDEPVILFVGRLVPRKGV 214 (374)
T ss_pred ---CCCCcEEEecCcccccccCccc-------------------------hHHHhhcCCc--CCCeEEEEecchhhhcCH
Confidence 1346899999999998775421 1122223332 356899999999999999
Q ss_pred HHHHHHHhhccCC--CcEEEEEecCh
Q 006770 599 DLIAEAIPWMMGQ--DVQLSHVGHWQ 622 (632)
Q Consensus 599 dlLLeA~~~L~~~--dvqLVI~G~G~ 622 (632)
+.+++|+..+... +++|+++|.|+
T Consensus 215 ~~~i~~~~~~~~~~~~~~l~i~G~~~ 240 (374)
T cd03801 215 DLLLEALAKLRKEYPDVRLVIVGDGP 240 (374)
T ss_pred HHHHHHHHHHhhhcCCeEEEEEeCcH
Confidence 9999999998764 89999999876
No 50
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.64 E-value=8.4e-15 Score=154.21 Aligned_cols=155 Identities=19% Similarity=0.147 Sum_probs=105.9
Q ss_pred CCccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHH
Q 006770 407 DGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIF 486 (632)
Q Consensus 407 ~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~ 486 (632)
.+|||||+|....++.+..+.. ..++|+|+|+|+...... .. . ...... .. ...++
T Consensus 81 ~~~dvvh~~~~~~~~~~~~~~~-------~~~~p~i~~~h~~~~~~~--~~-~---~~~~~~----~~-------~~~~~ 136 (367)
T cd05844 81 HRPDLVHAHFGFDGVYALPLAR-------RLGVPLVVTFHGFDATTS--LA-L---LLRSRW----AL-------YARRR 136 (367)
T ss_pred hCCCEEEeccCchHHHHHHHHH-------HcCCCEEEEEeCcccccc--ch-h---hcccch----hH-------HHHHH
Confidence 5899999996655544443322 257999999998532110 00 0 000000 00 12345
Q ss_pred HHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchH
Q 006770 487 AAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQ 566 (632)
Q Consensus 487 r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~ 566 (632)
+..++.+|.|+++|+..++.+.. .| + +..++.+|+||+|.+.|.|...
T Consensus 137 ~~~~~~~d~ii~~s~~~~~~~~~--~~--~------~~~~i~vi~~g~d~~~~~~~~~---------------------- 184 (367)
T cd05844 137 RRLARRAALFIAVSQFIRDRLLA--LG--F------PPEKVHVHPIGVDTAKFTPATP---------------------- 184 (367)
T ss_pred HHHHHhcCEEEECCHHHHHHHHH--cC--C------CHHHeEEecCCCCHHhcCCCCC----------------------
Confidence 56678999999999998887764 22 1 5678999999999887765310
Q ss_pred HHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC--CCcEEEEEecCh--hhHHHHHH
Q 006770 567 CKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG--QDVQLSHVGHWQ--TRFGRDAE 630 (632)
Q Consensus 567 ~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~--~dvqLVI~G~G~--~~le~~lk 630 (632)
..+.++|+|+||+.++||++.+++|++.+.+ .+++|+|+|+|+ ..+.+.++
T Consensus 185 -------------~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~ 239 (367)
T cd05844 185 -------------ARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALAR 239 (367)
T ss_pred -------------CCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHH
Confidence 1245789999999999999999999999875 489999999986 34444444
No 51
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.63 E-value=3.9e-14 Score=146.89 Aligned_cols=225 Identities=20% Similarity=0.157 Sum_probs=137.0
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++|++. +|. .||+++++..|+++|.+.||+|.|++......... .. ....+....
T Consensus 1 kI~~v~~~-~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~-~~-------------------~~~~~~~~~ 57 (366)
T cd03822 1 RIALVSPY-PPR--KCGIATFTTDLVNALSARGPDVLVVSVAALYPSLL-YG-------------------GEQEVVRVI 57 (366)
T ss_pred CeEEecCC-CCC--CCcHHHHHHHHHHHhhhcCCeEEEEEeecccCccc-CC-------------------Ccccceeee
Confidence 78999764 563 79999999999999999999999998654321100 00 000000000
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~ 438 (632)
. .+.. ..+ ....+.++ ..+||+||+|.|...+.+........ .....+
T Consensus 58 -~-----------~~~~------~~~----~~~~~~~~---------~~~~dii~~~~~~~~~~~~~~~~~~~-~~~~~~ 105 (366)
T cd03822 58 -V-----------LDNP------LDY----RRAARAIR---------LSGPDVVVIQHEYGIFGGEAGLYLLL-LLRGLG 105 (366)
T ss_pred -e-----------cCCc------hhH----HHHHHHHh---------hcCCCEEEEeeccccccchhhHHHHH-HHhhcC
Confidence 0 0100 000 11222333 25799999998654332222111110 001257
Q ss_pred CeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcccc
Q 006770 439 TRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHN 518 (632)
Q Consensus 439 iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~ 518 (632)
+|+|+++|+.... .+ .. + ...+++..++.+|+|+++|....+++...
T Consensus 106 ~~~i~~~h~~~~~--~~----------~~-------~------~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------- 152 (366)
T cd03822 106 IPVVVTLHTVLLH--EP----------RP-------G------DRALLRLLLRRADAVIVMSSELLRALLLR-------- 152 (366)
T ss_pred CCEEEEEecCCcc--cc----------ch-------h------hhHHHHHHHhcCCEEEEeeHHHHHHHHhh--------
Confidence 8999999995110 00 00 0 12344566789999999974444443321
Q ss_pred ccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCH
Q 006770 519 IINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGV 598 (632)
Q Consensus 519 il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGv 598 (632)
....++.+|+||+|...+.+.. . . ++.+.+ .+.++|+|+||+.++||+
T Consensus 153 ---~~~~~~~~i~~~~~~~~~~~~~---------------------~-----~-~~~~~~--~~~~~i~~~G~~~~~K~~ 200 (366)
T cd03822 153 ---AYPEKIAVIPHGVPDPPAEPPE---------------------S-----L-KALGGL--DGRPVLLTFGLLRPYKGL 200 (366)
T ss_pred ---cCCCcEEEeCCCCcCcccCCch---------------------h-----h-HhhcCC--CCCeEEEEEeeccCCCCH
Confidence 0247999999999986654320 0 0 222332 367899999999999999
Q ss_pred HHHHHHHhhccC--CCcEEEEEecChh
Q 006770 599 DLIAEAIPWMMG--QDVQLSHVGHWQT 623 (632)
Q Consensus 599 dlLLeA~~~L~~--~dvqLVI~G~G~~ 623 (632)
+.+++|+..+.+ .+++|+|+|.|..
T Consensus 201 ~~ll~a~~~~~~~~~~~~l~i~G~~~~ 227 (366)
T cd03822 201 ELLLEALPLLVAKHPDVRLLVAGETHP 227 (366)
T ss_pred HHHHHHHHHHHhhCCCeEEEEeccCcc
Confidence 999999999876 3899999999864
No 52
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.62 E-value=1.9e-14 Score=149.23 Aligned_cols=238 Identities=16% Similarity=0.142 Sum_probs=148.4
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++++..+.|. ..||++.++.+|+++|+++||+|+++++......... . .......
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~--------------------~~~~~~~- 57 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLL-P--------------------LRAALRL- 57 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccc-c--------------------chhcccc-
Confidence 688888887773 4799999999999999999999999997654321110 0 0000000
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~ 438 (632)
+...... .... .+..........+. ..++||||+|.+..... + ..+
T Consensus 58 -~~~~~~~----~~~~--------~~~~~~~~~~~~~~---------~~~~Dii~~~~~~~~~~----~--------~~~ 103 (365)
T cd03809 58 -LLRLPRR----LLWG--------LLFLLRAGDRLLLL---------LLGLDLLHSPHNTAPLL----R--------LRG 103 (365)
T ss_pred -ccccccc----cccc--------hhhHHHHHHHHHhh---------hcCCCeeeecccccCcc----c--------CCC
Confidence 0000000 0000 00001111111122 24799999998665433 1 358
Q ss_pred CeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcccc
Q 006770 439 TRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHN 518 (632)
Q Consensus 439 iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~ 518 (632)
+|+|+++|+..+.. .+.. ...... .. ...+++..++.+|.++++|+..++.+.+. ++
T Consensus 104 ~~~i~~~hd~~~~~-~~~~------~~~~~~---~~-------~~~~~~~~~~~~d~~i~~s~~~~~~~~~~-~~----- 160 (365)
T cd03809 104 VPVVVTIHDLIPLR-FPEY------FSPGFR---RY-------FRRLLRRALRRADAIITVSEATKRDLLRY-LG----- 160 (365)
T ss_pred CCEEEEeccchhhh-Cccc------CCHHHH---HH-------HHHHHHHHHHHcCEEEEccHHHHHHHHHH-hC-----
Confidence 89999999963211 0100 000000 00 13456678899999999999999888753 21
Q ss_pred ccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCH
Q 006770 519 IINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGV 598 (632)
Q Consensus 519 il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGv 598 (632)
.+..++.+|+||+|...+.+... . . +.+.... .+.++|+|+||+.++||+
T Consensus 161 ---~~~~~~~vi~~~~~~~~~~~~~~--------------------~----~-~~~~~~~--~~~~~i~~~G~~~~~K~~ 210 (365)
T cd03809 161 ---VPPDKIVVIPLGVDPRFRPPPAE--------------------A----E-VLRALYL--LPRPYFLYVGTIEPRKNL 210 (365)
T ss_pred ---cCHHHEEeeccccCccccCCCch--------------------H----H-HHHHhcC--CCCCeEEEeCCCccccCH
Confidence 14678999999999887754310 0 0 2223332 367899999999999999
Q ss_pred HHHHHHHhhccCC--CcEEEEEecChhhHH
Q 006770 599 DLIAEAIPWMMGQ--DVQLSHVGHWQTRFG 626 (632)
Q Consensus 599 dlLLeA~~~L~~~--dvqLVI~G~G~~~le 626 (632)
+.+++|+..+... +++|+++|.+.....
T Consensus 211 ~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~ 240 (365)
T cd03809 211 ERLLEAFARLPAKGPDPKLVIVGKRGWLNE 240 (365)
T ss_pred HHHHHHHHHHHHhcCCCCEEEecCCccccH
Confidence 9999999999865 599999998764333
No 53
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.61 E-value=3.1e-14 Score=148.74 Aligned_cols=224 Identities=18% Similarity=0.155 Sum_probs=140.5
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEE
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDF 357 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v 357 (632)
|||++++.. + ..||.++++..++++|.++||+|+|++.....
T Consensus 1 MkIl~~~~~--~--~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~---------------------------------- 42 (365)
T cd03825 1 MKVLHLNTS--D--ISGGAARAAYRLHRALQAAGVDSTMLVQEKKA---------------------------------- 42 (365)
T ss_pred CeEEEEecC--C--CCCcHHHHHHHHHHHHHhcCCceeEEEeecch----------------------------------
Confidence 899999763 3 35999999999999999999999999843110
Q ss_pred EEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCC
Q 006770 358 VFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQ 437 (632)
Q Consensus 358 ~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~ 437 (632)
++ +.++ ..+|||||+|.+..+.+...+...+ ..
T Consensus 43 --------------~~-------------------~~~~---------~~~~diih~~~~~~~~~~~~~~~~~-----~~ 75 (365)
T cd03825 43 --------------LI-------------------SKIE---------IINADIVHLHWIHGGFLSIEDLSKL-----LD 75 (365)
T ss_pred --------------hh-------------------hChh---------cccCCEEEEEccccCccCHHHHHHH-----Hc
Confidence 00 0011 2479999999766655443332221 14
Q ss_pred CCeEEEEEeCCccc-CC--CCCC--cc-ccCCCCccccccccccCC--CCchhHHHHHHHh-hcCCeEEEechhHHHHHH
Q 006770 438 YTRSLLVIHNIAHQ-GR--GPVS--DF-VYTDLPGHYLDLFKLYDP--VGGEHFNIFAAGL-KTADRVVTVSRGYSWELK 508 (632)
Q Consensus 438 ~iPvV~TIHn~~~q-g~--~p~~--~l-~~~glp~~~~~~l~~~~p--~~g~~~~i~r~~l-~~AD~VItVS~~~a~el~ 508 (632)
++|+|+|+|+.... .. .+.. .+ ...+.... ...+.+ ............+ ..++.++++|+..++.+.
T Consensus 76 ~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~ 151 (365)
T cd03825 76 RKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQ----LGSYPEKDLSRWIWRRKRKAWADLNLTIVAPSRWLADCAR 151 (365)
T ss_pred CCCEEEEcccCcccccccCCccccccccccCCCCCC----CCCCCcccHHHHHHHHHHHHhccCCcEEEehhHHHHHHHH
Confidence 78999999985321 00 0000 00 00000000 000000 0000111112222 457789999988776665
Q ss_pred HhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEE
Q 006770 509 TAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGF 588 (632)
Q Consensus 509 ~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlf 588 (632)
+. +. .+..++.+|+||||.+.|.|.. +...++.++++. +.+++++
T Consensus 152 ~~-~~--------~~~~~~~vi~ngi~~~~~~~~~------------------------~~~~~~~~~~~~--~~~~i~~ 196 (365)
T cd03825 152 SS-SL--------FKGIPIEVIPNGIDTTIFRPRD------------------------KREARKRLGLPA--DKKIILF 196 (365)
T ss_pred hc-cc--------cCCCceEEeCCCCcccccCCCc------------------------HHHHHHHhCCCC--CCeEEEE
Confidence 41 11 1567999999999998886531 233567788873 5677888
Q ss_pred EcCCcc--ccCHHHHHHHHhhccC---CCcEEEEEecChhhH
Q 006770 589 IGRLDH--QKGVDLIAEAIPWMMG---QDVQLSHVGHWQTRF 625 (632)
Q Consensus 589 VGRL~~--qKGvdlLLeA~~~L~~---~dvqLVI~G~G~~~l 625 (632)
.|+... +||++.+++|++.+.+ .+++|+++|.|+...
T Consensus 197 ~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~ 238 (365)
T cd03825 197 GAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEI 238 (365)
T ss_pred EecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhh
Confidence 888765 8999999999999875 589999999987543
No 54
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.61 E-value=3.8e-14 Score=150.79 Aligned_cols=223 Identities=16% Similarity=0.045 Sum_probs=137.0
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeE
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVD 356 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~ 356 (632)
+|||++++.+ .||...++.+|+++|.++||+|.|++......... ....|++
T Consensus 1 ~~~i~i~~~g------~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~----------------------~~~~g~~ 52 (357)
T PRK00726 1 MKKILLAGGG------TGGHVFPALALAEELKKRGWEVLYLGTARGMEARL----------------------VPKAGIE 52 (357)
T ss_pred CcEEEEEcCc------chHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhc----------------------cccCCCc
Confidence 4999998763 68888889999999999999999998643210000 0114667
Q ss_pred EEEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCC
Q 006770 357 FVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLM 436 (632)
Q Consensus 357 v~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~ 436 (632)
++.++.+.... ..... ..-....+......+.++++ ..+|||||+|.|.+++.+.++.. .
T Consensus 53 ~~~~~~~~~~~--~~~~~--~l~~~~~~~~~~~~~~~~ik---------~~~pDvv~~~~~~~~~~~~~~~~-------~ 112 (357)
T PRK00726 53 FHFIPSGGLRR--KGSLA--NLKAPFKLLKGVLQARKILK---------RFKPDVVVGFGGYVSGPGGLAAR-------L 112 (357)
T ss_pred EEEEeccCcCC--CChHH--HHHHHHHHHHHHHHHHHHHH---------hcCCCEEEECCCcchhHHHHHHH-------H
Confidence 76665432110 00000 00011111111122333343 35799999999876655544332 2
Q ss_pred CCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcc
Q 006770 437 QYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGL 516 (632)
Q Consensus 437 ~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL 516 (632)
.++|+|++.|+.. +. ...++.++.+|+++++++....+
T Consensus 113 ~~~p~v~~~~~~~-----~~---------------------------~~~r~~~~~~d~ii~~~~~~~~~---------- 150 (357)
T PRK00726 113 LGIPLVIHEQNAV-----PG---------------------------LANKLLARFAKKVATAFPGAFPE---------- 150 (357)
T ss_pred cCCCEEEEcCCCC-----cc---------------------------HHHHHHHHHhchheECchhhhhc----------
Confidence 5789998766521 00 11244556799999988743211
Q ss_pred ccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCcccc
Q 006770 517 HNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQK 596 (632)
Q Consensus 517 ~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qK 596 (632)
.+..++++|+||+|.+.|.+.. .+.+++++ ++.++|+++|+...+|
T Consensus 151 -----~~~~~i~vi~n~v~~~~~~~~~---------------------------~~~~~~~~--~~~~~i~~~gg~~~~~ 196 (357)
T PRK00726 151 -----FFKPKAVVTGNPVREEILALAA---------------------------PPARLAGR--EGKPTLLVVGGSQGAR 196 (357)
T ss_pred -----cCCCCEEEECCCCChHhhcccc---------------------------hhhhccCC--CCCeEEEEECCcHhHH
Confidence 1568999999999987654310 11245554 3567899999999989
Q ss_pred CHHHHH-HHHhhccCCCcEEEEEecChh
Q 006770 597 GVDLIA-EAIPWMMGQDVQLSHVGHWQT 623 (632)
Q Consensus 597 GvdlLL-eA~~~L~~~dvqLVI~G~G~~ 623 (632)
++..++ +|+..+......++++|+|+.
T Consensus 197 ~~~~~l~~a~~~~~~~~~~~~~~G~g~~ 224 (357)
T PRK00726 197 VLNEAVPEALALLPEALQVIHQTGKGDL 224 (357)
T ss_pred HHHHHHHHHHHHhhhCcEEEEEcCCCcH
Confidence 875544 998887544356778899863
No 55
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.60 E-value=7.4e-14 Score=141.91 Aligned_cols=227 Identities=23% Similarity=0.228 Sum_probs=143.1
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++++..+. .||.+.++..|+++|.+.||+|.|++......... .. . . ........
T Consensus 1 kIl~~~~~~~----~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~-~~--~------~----------~~~~~~~~ 57 (353)
T cd03811 1 KILFVIPSLG----GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLE-LL--P------S----------NVKLIPVR 57 (353)
T ss_pred CeEEEeeccc----CCCcchhHHHHHHHHHhcCceEEEEEcCCCCcccc-cc--c------c----------chhhhcee
Confidence 6888887642 69999999999999999999999999754331110 00 0 0 00000000
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCc-chhHHHHHHHHHhhhcCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDW-HTALLPVYLKAYYRDNGLMQ 437 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw-~sallp~~l~~~~~~~~~~~ 437 (632)
... . ..+. ...+...+.++++ ..+||+||+|.+ ...+++.+.. ..
T Consensus 58 ~~~---~-----~~~~---------~~~~~~~~~~~~~---------~~~~dii~~~~~~~~~~~~~~~~--------~~ 103 (353)
T cd03811 58 VLK---L-----KSLR---------DLLAILRLRRLLR---------KEKPDVVISHLTTTPNVLALLAA--------RL 103 (353)
T ss_pred eee---c-----cccc---------chhHHHHHHHHHH---------hcCCCEEEEcCccchhHHHHHHh--------hc
Confidence 000 0 0000 0011122333344 247999999987 3333332221 12
Q ss_pred CCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccc
Q 006770 438 YTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLH 517 (632)
Q Consensus 438 ~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~ 517 (632)
++|+|+++|+....... ... . ...+++..+..+|.++++|+..++.+... ++
T Consensus 104 ~~~~i~~~~~~~~~~~~-----------~~~------~------~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~---- 155 (353)
T cd03811 104 GTKLIVWEHNSLSLELK-----------RKL------R------LLLLIRKLYRRADKIVAVSEGVKEDLLKL-LG---- 155 (353)
T ss_pred CCceEEEEcCcchhhhc-----------cch------h------HHHHHHhhccccceEEEeccchhhhHHHh-hc----
Confidence 78999999996321100 000 0 01245667789999999999999887753 21
Q ss_pred cccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccC
Q 006770 518 NIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKG 597 (632)
Q Consensus 518 ~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKG 597 (632)
.+..++.+|+||+|.+.|.+... . . . +++.. .+.++|+|+||+.+.||
T Consensus 156 ----~~~~~~~vi~~~~~~~~~~~~~~--------------------~---~-~--~~~~~--~~~~~i~~~g~~~~~k~ 203 (353)
T cd03811 156 ----IPPDKIEVIYNPIDIEEIRALAE--------------------E---P-L--ELGIP--PDGPVILAVGRLSPQKG 203 (353)
T ss_pred ----CCccccEEecCCcChhhcCcccc--------------------h---h-h--hcCCC--CCceEEEEEecchhhcC
Confidence 13678999999999987755310 0 0 0 23333 46789999999999999
Q ss_pred HHHHHHHHhhccCC--CcEEEEEecCh
Q 006770 598 VDLIAEAIPWMMGQ--DVQLSHVGHWQ 622 (632)
Q Consensus 598 vdlLLeA~~~L~~~--dvqLVI~G~G~ 622 (632)
++.+++|+..+... +++|+|+|.|+
T Consensus 204 ~~~~i~~~~~l~~~~~~~~l~i~G~~~ 230 (353)
T cd03811 204 FDTLIRAFALLRKEGPDARLVILGDGP 230 (353)
T ss_pred hHHHHHHHHHhhhcCCCceEEEEcCCc
Confidence 99999999998763 89999999986
No 56
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.60 E-value=1.2e-13 Score=140.31 Aligned_cols=218 Identities=19% Similarity=0.160 Sum_probs=137.8
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++++..+.| .||.++++..|+++|.++||+|+|+++.... .... ....++.+.
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~-~~~~---------------------~~~~~~~~~ 55 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGE-PPFY---------------------ELDPKIKVI 55 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCC-CCcc---------------------ccCCcccee
Confidence 68999887655 6999999999999999999999999976443 1100 011233333
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~ 438 (632)
.+....... .+. ...+...+.++++ ..+||+||+|.+.. ..++.... ...
T Consensus 56 ~~~~~~~~~----~~~---------~~~~~~~~~~~l~---------~~~~d~i~~~~~~~---~~~~~~~~-----~~~ 105 (348)
T cd03820 56 DLGDKRDSK----LLA---------RFKKLRRLRKLLK---------NNKPDVVISFLTSL---LTFLASLG-----LKI 105 (348)
T ss_pred ecccccccc----hhc---------cccchHHHHHhhc---------ccCCCEEEEcCchH---HHHHHHHh-----hcc
Confidence 322111000 000 0001112223343 35899999998761 11122111 112
Q ss_pred CeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcccc
Q 006770 439 TRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHN 518 (632)
Q Consensus 439 iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~ 518 (632)
+|+|++.|+...... ... .....++..++.+|.++++|+..+.... .
T Consensus 106 ~~~i~~~~~~~~~~~------------~~~------------~~~~~~~~~~~~~d~ii~~s~~~~~~~~----~----- 152 (348)
T cd03820 106 VKLIVSEHNSPDAYK------------KRL------------RRLLLRRLLYRRADAVVVLTEEDRALYY----K----- 152 (348)
T ss_pred ccEEEecCCCccchh------------hhh------------HHHHHHHHHHhcCCEEEEeCHHHHHHhh----c-----
Confidence 599999998421100 000 0112357778999999999998762111 1
Q ss_pred ccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCH
Q 006770 519 IINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGV 598 (632)
Q Consensus 519 il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGv 598 (632)
....++.+|+||+|...+.+. . ..+.+.++|+||+.+.||+
T Consensus 153 ---~~~~~~~vi~~~~~~~~~~~~----------------------------------~--~~~~~~i~~~g~~~~~K~~ 193 (348)
T cd03820 153 ---KFNKNVVVIPNPLPFPPEEPS----------------------------------S--DLKSKRILAVGRLVPQKGF 193 (348)
T ss_pred ---cCCCCeEEecCCcChhhcccc----------------------------------C--CCCCcEEEEEEeeccccCH
Confidence 146789999999998655321 0 1256789999999999999
Q ss_pred HHHHHHHhhccC--CCcEEEEEecChh
Q 006770 599 DLIAEAIPWMMG--QDVQLSHVGHWQT 623 (632)
Q Consensus 599 dlLLeA~~~L~~--~dvqLVI~G~G~~ 623 (632)
+.+++|+..+.+ .+++|+|+|.|+.
T Consensus 194 ~~l~~~~~~l~~~~~~~~l~i~G~~~~ 220 (348)
T cd03820 194 DLLIEAWAKIAKKHPDWKLRIVGDGPE 220 (348)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEeCCCC
Confidence 999999999874 4899999999863
No 57
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.59 E-value=4.1e-13 Score=137.39 Aligned_cols=241 Identities=26% Similarity=0.276 Sum_probs=146.9
Q ss_pred EEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEEE
Q 006770 280 VILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVF 359 (632)
Q Consensus 280 IL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~~ 359 (632)
||+++..++|. ..||.+.++..++++|.+.||+|+|+++........... .. ..........
T Consensus 1 iLii~~~~p~~-~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~--------~~---------~~~~~~~~~~ 62 (377)
T cd03798 1 ILVISSLYPPP-NNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLL--------KG---------RLVGVERLPV 62 (377)
T ss_pred CeEeccCCCCC-CCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhc--------cc---------cccccccccc
Confidence 57777765552 369999999999999999999999999754322110000 00 0000000000
Q ss_pred ecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcch-hHHHHHHHHHhhhcCCCCC
Q 006770 360 LDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHT-ALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 360 I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~s-allp~~l~~~~~~~~~~~~ 438 (632)
.. ... ... ........+...+..+++.. ..+||+||+|.... .++...+.. ..+
T Consensus 63 ~~-~~~------~~~----~~~~~~~~~~~~~~~~l~~~-------~~~~dii~~~~~~~~~~~~~~~~~-------~~~ 117 (377)
T cd03798 63 LL-PVV------PLL----KGPLLYLLAARALLKLLKLK-------RFRPDLIHAHFAYPDGFAAALLKR-------KLG 117 (377)
T ss_pred Cc-chh------hcc----ccchhHHHHHHHHHHHHhcc-------cCCCCEEEEeccchHHHHHHHHHH-------hcC
Confidence 00 000 000 00011122333344444411 25899999994332 222222221 246
Q ss_pred CeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcccc
Q 006770 439 TRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHN 518 (632)
Q Consensus 439 iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~ 518 (632)
+|+++++|+...... .. .. ....+++..+..+|.|+++|+..++.+.+. +
T Consensus 118 ~~~i~~~h~~~~~~~-~~----------~~------------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~--~----- 167 (377)
T cd03798 118 IPLVVTLHGSDVNLL-PR----------KR------------LLRALLRRALRRADAVIAVSEALADELKAL--G----- 167 (377)
T ss_pred CCEEEEeecchhccc-Cc----------hh------------hHHHHHHHHHhcCCeEEeCCHHHHHHHHHh--c-----
Confidence 899999999633210 00 00 013456677889999999999998887652 1
Q ss_pred ccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCH
Q 006770 519 IINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGV 598 (632)
Q Consensus 519 il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGv 598 (632)
.+..++.+|+||+|...|.+... . + . .+++.. .+.++|+|+||+.+.||+
T Consensus 168 ---~~~~~~~~i~~~~~~~~~~~~~~--------------------~--~--~-~~~~~~--~~~~~i~~~g~~~~~k~~ 217 (377)
T cd03798 168 ---IDPEKVTVIPNGVDTERFSPADR--------------------A--E--A-RKLGLP--EDKKVILFVGRLVPRKGI 217 (377)
T ss_pred ---CCCCceEEcCCCcCcccCCCcch--------------------H--H--H-HhccCC--CCceEEEEeccCccccCH
Confidence 15679999999999988765310 0 0 0 233333 367899999999999999
Q ss_pred HHHHHHHhhccCC--CcEEEEEecChh
Q 006770 599 DLIAEAIPWMMGQ--DVQLSHVGHWQT 623 (632)
Q Consensus 599 dlLLeA~~~L~~~--dvqLVI~G~G~~ 623 (632)
+.+++|+..+... +++|+|+|.|+.
T Consensus 218 ~~li~~~~~~~~~~~~~~l~i~g~~~~ 244 (377)
T cd03798 218 DYLIEALARLLKKRPDVHLVIVGDGPL 244 (377)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 9999999998763 899999999863
No 58
>PLN02275 transferase, transferring glycosyl groups
Probab=99.58 E-value=1.1e-13 Score=149.26 Aligned_cols=242 Identities=13% Similarity=0.019 Sum_probs=138.8
Q ss_pred CCcHHHHHHHHHHHHHHCCC-eEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEEEecCccccccCCC
Q 006770 293 TGGLGDVAGALPKALARRGH-RVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNN 371 (632)
Q Consensus 293 ~GGlg~~v~~LakaLakrGh-eV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~~I~~p~~~~~~~~ 371 (632)
-+|.+..+..++..|+++|| +|+|++...+.... + ....+||+++.++.+.......
T Consensus 14 ~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~--~-------------------~~~~~~v~v~r~~~~~~~~~~~- 71 (371)
T PLN02275 14 DFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIP--A-------------------LLNHPSIHIHLMVQPRLLQRLP- 71 (371)
T ss_pred CCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCH--H-------------------HhcCCcEEEEECCCcccccccc-
Confidence 36778899999999999986 89999853321110 0 0123567777765321111000
Q ss_pred CCCCChhhHHHHH-HHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhH---HHHHHHHHhhhcCCCCCCeEEEEEeC
Q 006770 372 IYGGGREDILKRM-VLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTAL---LPVYLKAYYRDNGLMQYTRSLLVIHN 447 (632)
Q Consensus 372 iY~~~~~d~~~r~-~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sal---lp~~l~~~~~~~~~~~~iPvV~TIHn 447 (632)
.+.. ....+... ..| .++...+.. . ..+|||||+|..+... ++.++.. ..++|+|+|+|+
T Consensus 72 ~~~~-~~~~~~~~~~~~-~~~~~~~~~-~------~~~~DvV~~~~~~~~~~~~~~~~~~~-------~~~~p~v~~~h~ 135 (371)
T PLN02275 72 RVLY-ALALLLKVAIQF-LMLLWFLCV-K------IPRPDVFLVQNPPSVPTLAVVKLACW-------LRRAKFVIDWHN 135 (371)
T ss_pred cchH-HHHHHHHHHHHH-HHHHHHHHh-h------CCCCCEEEEeCCCCcHHHHHHHHHHH-------HhCCCEEEEcCC
Confidence 0100 00001111 011 122222111 1 3689999999754322 2222221 247899999998
Q ss_pred CcccCCCCCCccccCCCC-ccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCc
Q 006770 448 IAHQGRGPVSDFVYTDLP-GHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWK 526 (632)
Q Consensus 448 ~~~qg~~p~~~l~~~glp-~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~K 526 (632)
..+. ....+.. ..... .+ ...+++..++.||+||++|+.+++.+.+. +| . +
T Consensus 136 ~~~~-------~~~~~~~~~~~~~--~~-------~~~~e~~~~~~ad~ii~~S~~~~~~l~~~-~g--~---------~ 187 (371)
T PLN02275 136 FGYT-------LLALSLGRSHPLV--RL-------YRWYERHYGKMADGHLCVTKAMQHELDQN-WG--I---------R 187 (371)
T ss_pred ccHH-------HHhcccCCCCHHH--HH-------HHHHHHHHHhhCCEEEECCHHHHHHHHHh-cC--C---------C
Confidence 5311 0001111 00000 00 12456778889999999999999888652 22 1 2
Q ss_pred EEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHh
Q 006770 527 LSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIP 606 (632)
Q Consensus 527 i~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~ 606 (632)
+.+|+||+ .+.|.|... . . .+.. ++..+|+++||+.++||+++|++|+.
T Consensus 188 i~vi~n~~-~~~f~~~~~--------------------~-------~--~~~~-~~~~~i~~~grl~~~k~~~~li~a~~ 236 (371)
T PLN02275 188 ATVLYDQP-PEFFRPASL--------------------E-------I--RLRP-NRPALVVSSTSWTPDEDFGILLEAAV 236 (371)
T ss_pred eEEECCCC-HHHcCcCCc--------------------h-------h--cccC-CCcEEEEEeCceeccCCHHHHHHHHH
Confidence 78999995 466765310 0 0 0111 13357889999999999999999998
Q ss_pred hcc-------------------CCCcEEEEEecCh--hhHHHHHHh
Q 006770 607 WMM-------------------GQDVQLSHVGHWQ--TRFGRDAEE 631 (632)
Q Consensus 607 ~L~-------------------~~dvqLVI~G~G~--~~le~~lke 631 (632)
.+. ..+++|+|+|+|+ +++++++++
T Consensus 237 ~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~ 282 (371)
T PLN02275 237 MYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQKAMYEEKISR 282 (371)
T ss_pred HHHhhhhhccccccccccccccCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 763 1479999999998 467777665
No 59
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.56 E-value=6.2e-13 Score=135.78 Aligned_cols=228 Identities=19% Similarity=0.173 Sum_probs=146.0
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++++.. .||...++..|+++|.++||+|+++++...... . ....++.++
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~-~----------------------~~~~~~~~~ 51 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE-E----------------------LEALGVKVI 51 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc-c----------------------cccCCceEE
Confidence 68888874 589999999999999999999999997543211 0 112345554
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~ 438 (632)
.++.... .... +..+ .....+.++++ ..+||+||+|.+...+++.+++.. ...
T Consensus 52 ~~~~~~~-----~~~~------~~~~-~~~~~~~~~~~---------~~~~dvv~~~~~~~~~~~~~~~~~------~~~ 104 (359)
T cd03808 52 PIPLDRR-----GINP------FKDL-KALLRLYRLLR---------KERPDIVHTHTPKPGILGRLAARL------AGV 104 (359)
T ss_pred ecccccc-----ccCh------HhHH-HHHHHHHHHHH---------hcCCCEEEEccccchhHHHHHHHH------cCC
Confidence 4432210 0000 0011 11122333343 358999999976665554443321 245
Q ss_pred CeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcccc
Q 006770 439 TRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHN 518 (632)
Q Consensus 439 iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~ 518 (632)
.++++++|+..+..... .... . ....+++..+..+|.++++|+..++.+... +..
T Consensus 105 ~~~i~~~~~~~~~~~~~-----------~~~~--~-------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~~---- 159 (359)
T cd03808 105 PKVIYTVHGLGFVFTSG-----------GLKR--R-------LYLLLERLALRFTDKVIFQNEDDRDLALKL-GII---- 159 (359)
T ss_pred CCEEEEecCcchhhccc-----------hhHH--H-------HHHHHHHHHHhhccEEEEcCHHHHHHHHHh-cCC----
Confidence 68889999853221100 0000 0 012345677789999999999998877652 110
Q ss_pred ccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCH
Q 006770 519 IINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGV 598 (632)
Q Consensus 519 il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGv 598 (632)
.+..++.+++||+|...|.+... . . ..+.++|+|+||+.++||+
T Consensus 160 ---~~~~~~~~~~~~~~~~~~~~~~~--------------------~-----------~--~~~~~~i~~~G~~~~~k~~ 203 (359)
T cd03808 160 ---KKKKTVLIPGSGVDLDRFSPSPE--------------------P-----------I--PEDDPVFLFVARLLKDKGI 203 (359)
T ss_pred ---CcCceEEecCCCCChhhcCcccc--------------------c-----------c--CCCCcEEEEEeccccccCH
Confidence 12467888999999887754310 0 1 1356899999999999999
Q ss_pred HHHHHHHhhccC--CCcEEEEEecChh
Q 006770 599 DLIAEAIPWMMG--QDVQLSHVGHWQT 623 (632)
Q Consensus 599 dlLLeA~~~L~~--~dvqLVI~G~G~~ 623 (632)
+.+++++..+.+ .+++|+|+|.|+.
T Consensus 204 ~~li~~~~~l~~~~~~~~l~i~G~~~~ 230 (359)
T cd03808 204 DELLEAARILKAKGPNVRLLLVGDGDE 230 (359)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCc
Confidence 999999999874 5899999999874
No 60
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.53 E-value=6e-13 Score=146.13 Aligned_cols=252 Identities=15% Similarity=0.063 Sum_probs=141.6
Q ss_pred cCCCCCCC-cHHHHHHHHHHHHHHC--CCeEEEEccCCCCCCCCCCc-ccceeeeecCccceEEEEEEEECCeEEEEec-
Q 006770 287 CGPWSKTG-GLGDVAGALPKALARR--GHRVMVVAPHYGNYAEPQDT-GIRKRYRVDRQDIEVAYFQAYIDGVDFVFLD- 361 (632)
Q Consensus 287 ~~P~~~~G-Glg~~v~~LakaLakr--GheV~VVtP~y~~~~~~~di-g~r~~~~i~g~~~~v~v~~~~~dGV~v~~I~- 361 (632)
+.|+...| |.++++++.+.+|.++ ||+|+|+|..+...... .+ .....| ..+..++++++++.
T Consensus 6 ~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~-~l~~~~~~f-----------~~~~~~~~~~~~~~~ 73 (419)
T cd03806 6 FHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEE-ILEKVESRF-----------NIELDRPRIVFFLLK 73 (419)
T ss_pred ECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHH-HHHHHHHhc-----------CeecCCCceEEEEec
Confidence 35665566 9999999999999999 89999999775431100 00 000011 11334666655542
Q ss_pred CccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcC-cchhHHHHHHHHHhhhcCCCCCCe
Q 006770 362 SPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIAND-WHTALLPVYLKAYYRDNGLMQYTR 440 (632)
Q Consensus 362 ~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHd-w~sallp~~l~~~~~~~~~~~~iP 440 (632)
...+ .+...|+. ...+..+ +. .+...++.+. +..||||..|. |...+ |+ ++. +.++|
T Consensus 74 ~~~~--~~~~~~~r--~~~~~~~--~~-~~~~~~~~~~------~~~pDv~i~~~g~~~~~-~~-~~~-------~~~~~ 131 (419)
T cd03806 74 YRKL--VEASTYPR--FTLLGQA--LG-SMILGLEALL------KLVPDIFIDTMGYPFTY-PL-VRL-------LGGCP 131 (419)
T ss_pred ceee--eccccCCc--eeeHHHH--HH-HHHHHHHHHH------hcCCCEEEEcCCcccHH-HH-HHH-------hcCCe
Confidence 1111 11223331 0011111 11 1111111110 24799998885 43322 22 222 24679
Q ss_pred EEEEEeCCcccCCCCCCcccc--CCC---------Ccccc-cccc-ccCCCCchhHHHHHHHhhcCCeEEEechhHHHHH
Q 006770 441 SLLVIHNIAHQGRGPVSDFVY--TDL---------PGHYL-DLFK-LYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWEL 507 (632)
Q Consensus 441 vV~TIHn~~~qg~~p~~~l~~--~gl---------p~~~~-~~l~-~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el 507 (632)
+|+.+|-.. .+.+.+.. .+- ..+.. ...+ +|. .-...+++..++.||.|+++|+..++.+
T Consensus 132 ~i~y~h~P~----~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~---~~~~~~~~~~~~~aD~ii~~S~~~~~~~ 204 (419)
T cd03806 132 VGAYVHYPT----ISTDMLQKVRSREASYNNSATIARSPVLSKAKLLYY---RLFAFLYGLAGSFADVVMVNSTWTRNHI 204 (419)
T ss_pred EEEEecCCc----chHHHHHHHhhccccccCccchhccchHHHHHHHHH---HHHHHHHHHHhhcCCEEEECCHHHHHHH
Confidence 999999321 00111100 000 00000 0001 010 0011356778899999999999988877
Q ss_pred HHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEE
Q 006770 508 KTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIG 587 (632)
Q Consensus 508 ~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIl 587 (632)
.+. ++ ...++.+|+||+|++.|.+... .. ..+.++|+
T Consensus 205 ~~~-~~---------~~~~~~vi~~gvd~~~~~~~~~-------------------------------~~--~~~~~~il 241 (419)
T cd03806 205 RSL-WK---------RNTKPSIVYPPCDVEELLKLPL-------------------------------DE--KTRENQIL 241 (419)
T ss_pred HHH-hC---------cCCCcEEEcCCCCHHHhccccc-------------------------------cc--ccCCcEEE
Confidence 652 11 2248999999999987754210 00 12467999
Q ss_pred EEcCCccccCHHHHHHHHhhccCC-------CcEEEEEecCh
Q 006770 588 FIGRLDHQKGVDLIAEAIPWMMGQ-------DVQLSHVGHWQ 622 (632)
Q Consensus 588 fVGRL~~qKGvdlLLeA~~~L~~~-------dvqLVI~G~G~ 622 (632)
|+||+.++||++++++|++.+.+. +++|+|+|+|.
T Consensus 242 ~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~ 283 (419)
T cd03806 242 SIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCR 283 (419)
T ss_pred EEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCC
Confidence 999999999999999999998752 59999999874
No 61
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.52 E-value=8.2e-14 Score=128.17 Aligned_cols=160 Identities=23% Similarity=0.233 Sum_probs=86.8
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEEEecCccccccCCCCC
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIY 373 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~~I~~p~~~~~~~~iY 373 (632)
||++.++.+|+++|+++||+|+|+++....... ....+|++++.++.+.... ...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~---~~~ 55 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDD----------------------EEEEDGVRVHRLPLPRRPW---PLR 55 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-----------------------SEEETTEEEEEE--S-SSS---GGG
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCccc----------------------ccccCCceEEeccCCccch---hhh
Confidence 899999999999999999999999987543211 0234677777665432210 001
Q ss_pred CCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCC
Q 006770 374 GGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGR 453 (632)
Q Consensus 374 ~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~ 453 (632)
.+. +...+..++.. . ..+|||||+|++.+++++.+++.. .++|+|+|+|+..+...
T Consensus 56 ------~~~----~~~~~~~~l~~-~------~~~~Dvv~~~~~~~~~~~~~~~~~-------~~~p~v~~~h~~~~~~~ 111 (160)
T PF13579_consen 56 ------LLR----FLRRLRRLLAA-R------RERPDVVHAHSPTAGLVAALARRR-------RGIPLVVTVHGTLFRRG 111 (160)
T ss_dssp ------HCC----HHHHHHHHCHH-C------T---SEEEEEHHHHHHHHHHHHHH-------HT--EEEE-SS-T----
T ss_pred ------hHH----HHHHHHHHHhh-h------ccCCeEEEecccchhHHHHHHHHc-------cCCcEEEEECCCchhhc
Confidence 011 11222333311 1 368999999997766666555421 47999999998532110
Q ss_pred CCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCC
Q 006770 454 GPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNG 533 (632)
Q Consensus 454 ~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNG 533 (632)
. .+. ..+ ...+++..++.||+|+++|+..++.+.+ +|+ +++|+.+||||
T Consensus 112 ----------~--~~~--~~~-------~~~~~~~~~~~ad~vi~~S~~~~~~l~~--~g~--------~~~ri~vipnG 160 (160)
T PF13579_consen 112 ----------S--RWK--RRL-------YRWLERRLLRRADRVIVVSEAMRRYLRR--YGV--------PPDRIHVIPNG 160 (160)
T ss_dssp --------------HH--HHH-------HHHHHHHHHHH-SEEEESSHHHHHHHHH--H-----------GGGEEE----
T ss_pred ----------c--chh--hHH-------HHHHHHHHHhcCCEEEECCHHHHHHHHH--hCC--------CCCcEEEeCcC
Confidence 0 000 000 1245678889999999999999988876 332 67899999998
No 62
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.52 E-value=1.6e-13 Score=128.27 Aligned_cols=177 Identities=24% Similarity=0.259 Sum_probs=91.1
Q ss_pred EEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEEE
Q 006770 280 VILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVF 359 (632)
Q Consensus 280 IL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~~ 359 (632)
|+++. .+.| ..||+++++.+|+++|+++||+|+|+++........ ..+.. .
T Consensus 1 ili~~-~~~~--~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~-------------------------~~~~~-~ 51 (177)
T PF13439_consen 1 ILITN-IFLP--NIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEE-------------------------ELVKI-F 51 (177)
T ss_dssp -EEEC-C-TT--SSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SS-------------------------TEEEE--
T ss_pred CEEEE-ecCC--CCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchh-------------------------hccce-e
Confidence 34444 4455 479999999999999999999999999875542111 00000 0
Q ss_pred ecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCCC
Q 006770 360 LDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYT 439 (632)
Q Consensus 360 I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~i 439 (632)
.... . ..... ..........+.+++++ .+|||||+|.+....++.... .++
T Consensus 52 ~~~~-~------~~~~~----~~~~~~~~~~~~~~i~~---------~~~DiVh~~~~~~~~~~~~~~---------~~~ 102 (177)
T PF13439_consen 52 VKIP-Y------PIRKR----FLRSFFFMRRLRRLIKK---------EKPDIVHIHGPPAFWIALLAC---------RKV 102 (177)
T ss_dssp --TT--------SSTSS------HHHHHHHHHHHHHHH---------HT-SEEECCTTHCCCHHHHHH---------HCS
T ss_pred eeee-c------ccccc----cchhHHHHHHHHHHHHH---------cCCCeEEecccchhHHHHHhc---------cCC
Confidence 0000 0 00000 01111223344455553 379999999876544443221 168
Q ss_pred eEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccccc
Q 006770 440 RSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNI 519 (632)
Q Consensus 440 PvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~i 519 (632)
|+|+|+|+....... ..........+. ..+++...+.+|+||+||+..++++.+ +| +
T Consensus 103 ~~v~~~H~~~~~~~~-------~~~~~~~~~~~~---------~~~~~~~~~~~~~ii~vS~~~~~~l~~--~~--~--- 159 (177)
T PF13439_consen 103 PIVYTIHGPYFERRF-------LKSKLSPYSYLN---------FRIERKLYKKADRIIAVSESTKDELIK--FG--I--- 159 (177)
T ss_dssp CEEEEE-HHH--HHT-------TTTSCCCHHHHH---------HCTTHHHHCCSSEEEESSHHHHHHHHH--HT------
T ss_pred CEEEEeCCCcccccc-------cccccchhhhhh---------hhhhhhHHhcCCEEEEECHHHHHHHHH--hC--C---
Confidence 999999996421000 000000000000 112334468899999999999999886 33 2
Q ss_pred cccCCCcEEEeeCCCcCCCCC
Q 006770 520 INEVDWKLSGIVNGIDTKEWS 540 (632)
Q Consensus 520 l~~~~~Ki~vIpNGID~~~F~ 540 (632)
++.|+.+|+||||++.|+
T Consensus 160 ---~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 160 ---PPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp ----SS-EEE----B-CCCH-
T ss_pred ---cccCCEEEECCccHHHcC
Confidence 678999999999998873
No 63
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.51 E-value=3.5e-13 Score=151.19 Aligned_cols=163 Identities=12% Similarity=0.046 Sum_probs=103.7
Q ss_pred CCCccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEE-EEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHH
Q 006770 406 GDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSL-LVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFN 484 (632)
Q Consensus 406 ~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV-~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~ 484 (632)
..+|||||+|+..+.+.+..++. +.++|++ .+.|++ + +.. ...... . .+.
T Consensus 278 ~~rpDIVHt~~~~a~l~g~laA~-------lagvpviv~~~h~~-~----~~~-------~~r~~~-~---------e~~ 328 (578)
T PRK15490 278 ERKLDYLSVWQDGACLMIALAAL-------IAGVPRIQLGLRGL-P----PVV-------RKRLFK-P---------EYE 328 (578)
T ss_pred HcCCCEEEEcCcccHHHHHHHHH-------hcCCCEEEEeeccc-C----Ccc-------hhhHHH-H---------HHH
Confidence 36899999998776666554443 2578885 457762 1 110 000000 0 000
Q ss_pred HHH---HHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCccccccccc
Q 006770 485 IFA---AGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLH 561 (632)
Q Consensus 485 i~r---~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~ 561 (632)
+.. ..+..+| ++++|...++.+.+. ++ .+++|+.+||||||++.|.|....
T Consensus 329 ~~~~a~~i~~~sd-~v~~s~~v~~~l~~~-lg--------ip~~KI~VIyNGVD~~rf~p~~~~---------------- 382 (578)
T PRK15490 329 PLYQALAVVPGVD-FMSNNHCVTRHYADW-LK--------LEAKHFQVVYNGVLPPSTEPSSEV---------------- 382 (578)
T ss_pred HhhhhceeEecch-hhhccHHHHHHHHHH-hC--------CCHHHEEEEeCCcchhhcCccchh----------------
Confidence 111 1123445 677888878777652 22 278899999999999988774210
Q ss_pred CCchHHHHHHHH--HhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC--CCcEEEEEecChh--hHHHHHHh
Q 006770 562 TGKPQCKAALQR--EFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG--QDVQLSHVGHWQT--RFGRDAEE 631 (632)
Q Consensus 562 ~~K~~~k~~Lrk--~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~--~dvqLVI~G~G~~--~le~~lke 631 (632)
. ...++ ..+++ ++.++|+++||+.++||++.+++|+..+.+ .+++|+|+|+|+. ++++.+++
T Consensus 383 ---~---~~~r~~~~~~l~--~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~e 450 (578)
T PRK15490 383 ---P---HKIWQQFTQKTQ--DADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQ 450 (578)
T ss_pred ---h---HHHHHHhhhccC--CCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHH
Confidence 0 01222 23444 356899999999999999999999998765 4899999999973 56666554
No 64
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.50 E-value=1.5e-12 Score=137.30 Aligned_cols=228 Identities=15% Similarity=0.048 Sum_probs=136.1
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++.+. .+||-..++..|+++|.++||+|+|++........ . ....|++++
T Consensus 1 ~~~~~~~------~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~---~-------------------~~~~~~~~~ 52 (350)
T cd03785 1 RILIAGG------GTGGHIFPALALAEELRERGAEVLFLGTKRGLEAR---L-------------------VPKAGIPLH 52 (350)
T ss_pred CEEEEec------CchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhh---c-------------------ccccCCceE
Confidence 4666655 36888889999999999999999999875432110 0 012356666
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQY 438 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~ 438 (632)
.++.+.+.. ...+. +...+..+....+.+.++++ ..+|||||+|.+..++.+.++.. ..+
T Consensus 53 ~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~i~---------~~~pDvI~~~~~~~~~~~~~~a~-------~~~ 112 (350)
T cd03785 53 TIPVGGLRR--KGSLK--KLKAPFKLLKGVLQARKILK---------KFKPDVVVGFGGYVSGPVGLAAK-------LLG 112 (350)
T ss_pred EEEecCcCC--CChHH--HHHHHHHHHHHHHHHHHHHH---------hcCCCEEEECCCCcchHHHHHHH-------HhC
Confidence 554332210 00000 00011111111222334444 35899999998765544433322 247
Q ss_pred CeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcccc
Q 006770 439 TRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHN 518 (632)
Q Consensus 439 iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~ 518 (632)
+|+|++.|+. ++. ...+.....+|+|+++|+...+. .
T Consensus 113 ~p~v~~~~~~-----~~~---------------------------~~~~~~~~~~~~vi~~s~~~~~~-~---------- 149 (350)
T cd03785 113 IPLVIHEQNA-----VPG---------------------------LANRLLARFADRVALSFPETAKY-F---------- 149 (350)
T ss_pred CCEEEEcCCC-----Ccc---------------------------HHHHHHHHhhCEEEEcchhhhhc-C----------
Confidence 8988765552 110 11234456799999999876643 0
Q ss_pred ccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCH
Q 006770 519 IINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGV 598 (632)
Q Consensus 519 il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGv 598 (632)
++.++.+|+||+|.+.|.+. . .+++++++ ++.++|+++|+...+|+.
T Consensus 150 ----~~~~~~~i~n~v~~~~~~~~--------------------------~-~~~~~~~~--~~~~~i~~~~g~~~~~~~ 196 (350)
T cd03785 150 ----PKDKAVVTGNPVREEILALD--------------------------R-ERARLGLR--PGKPTLLVFGGSQGARAI 196 (350)
T ss_pred ----CCCcEEEECCCCchHHhhhh--------------------------h-hHHhcCCC--CCCeEEEEECCcHhHHHH
Confidence 45789999999998765432 0 15567776 367788899888788877
Q ss_pred H-HHHHHHhhccCCCcEE-EEEecCh-hhHHHHHH
Q 006770 599 D-LIAEAIPWMMGQDVQL-SHVGHWQ-TRFGRDAE 630 (632)
Q Consensus 599 d-lLLeA~~~L~~~dvqL-VI~G~G~-~~le~~lk 630 (632)
+ ++++|+..+.+.++++ +++|+|. .++.+.++
T Consensus 197 ~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~~~~~ 231 (350)
T cd03785 197 NEAVPEALAELLRKRLQVIHQTGKGDLEEVKKAYE 231 (350)
T ss_pred HHHHHHHHHHhhccCeEEEEEcCCccHHHHHHHHh
Confidence 5 5568888876556664 5778884 24444443
No 65
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.48 E-value=2.7e-12 Score=135.25 Aligned_cols=226 Identities=17% Similarity=0.111 Sum_probs=127.2
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEE
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDF 357 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v 357 (632)
|||++++-+ +||--.....|+++|.++||+|+|++...+... . . ....|+++
T Consensus 1 ~~i~~~~g~------~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~-~--~-------------------~~~~g~~~ 52 (348)
T TIGR01133 1 KKVVLAAGG------TGGHIFPALAVAEELIKRGVEVLWLGTKRGLEK-R--L-------------------VPKAGIEF 52 (348)
T ss_pred CeEEEEeCc------cHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh-c--c-------------------cccCCCce
Confidence 799988653 333333446899999999999999986432110 0 0 01246666
Q ss_pred EEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCC
Q 006770 358 VFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQ 437 (632)
Q Consensus 358 ~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~ 437 (632)
+.++...+.. ..... ....+..+....+.+.++++ ..+|||||+|.+...+.+..+.. ..
T Consensus 53 ~~i~~~~~~~--~~~~~--~l~~~~~~~~~~~~l~~~i~---------~~~pDvVi~~~~~~~~~~~~~~~-------~~ 112 (348)
T TIGR01133 53 YFIPVGGLRR--KGSFR--LIKTPLKLLKAVFQARRILK---------KFKPDAVIGFGGYVSGPAGLAAK-------LL 112 (348)
T ss_pred EEEeccCcCC--CChHH--HHHHHHHHHHHHHHHHHHHH---------hcCCCEEEEcCCcccHHHHHHHH-------Hc
Confidence 6554322110 00000 00001111111122334444 35899999997665544443332 24
Q ss_pred CCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccc
Q 006770 438 YTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLH 517 (632)
Q Consensus 438 ~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~ 517 (632)
++|+|++.|+. .+ . ...++..+.+|+++++|+..++.+
T Consensus 113 ~~p~v~~~~~~-----~~----------~-----------------~~~~~~~~~~d~ii~~~~~~~~~~---------- 150 (348)
T TIGR01133 113 GIPLFHHEQNA-----VP----------G-----------------LTNKLLSRFAKKVLISFPGAKDHF---------- 150 (348)
T ss_pred CCCEEEECCCC-----Cc----------c-----------------HHHHHHHHHhCeeEECchhHhhcC----------
Confidence 67887543331 00 0 112455678999999998765321
Q ss_pred cccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccC
Q 006770 518 NIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKG 597 (632)
Q Consensus 518 ~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKG 597 (632)
+..+|+||+|...+.+.. .+++++++ ++.++|+++||...+|+
T Consensus 151 --------~~~~i~n~v~~~~~~~~~---------------------------~~~~~~~~--~~~~~i~~~gg~~~~~~ 193 (348)
T TIGR01133 151 --------EAVLVGNPVRQEIRSLPV---------------------------PRERFGLR--EGKPTILVLGGSQGAKI 193 (348)
T ss_pred --------CceEEcCCcCHHHhcccc---------------------------hhhhcCCC--CCCeEEEEECCchhHHH
Confidence 237899999976553310 12356776 36789999999988999
Q ss_pred HH-HHHHHHhhccCCCcEEE-EEecCh-hhHHHHHH
Q 006770 598 VD-LIAEAIPWMMGQDVQLS-HVGHWQ-TRFGRDAE 630 (632)
Q Consensus 598 vd-lLLeA~~~L~~~dvqLV-I~G~G~-~~le~~lk 630 (632)
+. ++++|++.+...+++++ ++|+|+ ..+++.++
T Consensus 194 ~~~~l~~a~~~l~~~~~~~~~~~g~~~~~~l~~~~~ 229 (348)
T TIGR01133 194 LNELVPKALAKLAEKGIQIVHQTGKNDLEKVKNVYQ 229 (348)
T ss_pred HHHHHHHHHHHHhhcCcEEEEECCcchHHHHHHHHh
Confidence 65 45688888765566664 445554 23444443
No 66
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.46 E-value=3.5e-13 Score=145.93 Aligned_cols=162 Identities=15% Similarity=0.143 Sum_probs=99.9
Q ss_pred CCccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHH
Q 006770 407 DGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIF 486 (632)
Q Consensus 407 ~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~ 486 (632)
.++|+||+|.... +.++.. ...++|+|+++|++.... ++. .......+...+ +... ......++
T Consensus 103 ~~~D~v~~~~~~~---~~~~~~------~~~~~p~i~~~~d~~~~~-~~~-~~~~~~~~~~~~--~~~~---~~~~~~~e 166 (397)
T TIGR03087 103 EPVDAIVVFSSAM---AQYVTP------HVRGVPRIVDFVDVDSDK-WLQ-YARTKRWPLRWI--YRRE---GRLLLAYE 166 (397)
T ss_pred CCCCEEEEecccc---ceeccc------cccCCCeEeehhhHHHHH-HHH-HHhccCcchhHH--HHHH---HHHHHHHH
Confidence 5799999986432 222221 125789999999863210 000 000000110000 0000 00012456
Q ss_pred HHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchH
Q 006770 487 AAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQ 566 (632)
Q Consensus 487 r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~ 566 (632)
+..++.+|.|+++|+..++.+.+. ++ ....++.+||||||.+.|.|....
T Consensus 167 ~~~~~~ad~vi~~S~~~~~~l~~~-~~--------~~~~~v~vipngvd~~~f~~~~~~--------------------- 216 (397)
T TIGR03087 167 RAIAARFDAATFVSRAEAELFRRL-AP--------EAAGRITAFPNGVDADFFSPDRDY--------------------- 216 (397)
T ss_pred HHHHhhCCeEEEcCHHHHHHHHHh-CC--------CCCCCeEEeecccchhhcCCCccc---------------------
Confidence 778899999999999988887642 11 145689999999999988764210
Q ss_pred HHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHH----HHHhhccC--CCcEEEEEecChh
Q 006770 567 CKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIA----EAIPWMMG--QDVQLSHVGHWQT 623 (632)
Q Consensus 567 ~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLL----eA~~~L~~--~dvqLVI~G~G~~ 623 (632)
.-.++ .+.++|+|+||+.++||++.++ ++++.+.+ .+++|+|+|+|+.
T Consensus 217 -------~~~~~--~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~ 270 (397)
T TIGR03087 217 -------PNPYP--PGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS 270 (397)
T ss_pred -------cCCCC--CCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh
Confidence 00011 2467999999999999999888 45555543 4899999999975
No 67
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.44 E-value=5.6e-13 Score=148.49 Aligned_cols=160 Identities=23% Similarity=0.225 Sum_probs=103.2
Q ss_pred CCccEEEEcCc-chhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHH
Q 006770 407 DGNLVFIANDW-HTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNI 485 (632)
Q Consensus 407 ~~pDIIHaHdw-~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i 485 (632)
.++||||+|.. .+++++.+++. ..++|+|+|.|++....+. ..+............+ +.. -...+
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~-------~~~~p~I~t~Hg~~~~e~~--~~~~~~~~~~~~~~~~-~~~----~~~~l 237 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKA-------RRGTPFLLTEHGIYTRERK--IELLQADWEMSYFRRL-WIR----FFESL 237 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHH-------HhCCCEEEecCCccHHHHH--HHHHhcccchHHHHHH-HHH----HHHHH
Confidence 47899999964 33444443332 2589999999995211000 0000000000000000 000 01234
Q ss_pred HHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCch
Q 006770 486 FAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKP 565 (632)
Q Consensus 486 ~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~ 565 (632)
.+..++.||.|+++|+..++.+.. .|. ++.|+.+||||||.+.|.|...
T Consensus 238 ~~~~~~~ad~Ii~~s~~~~~~~~~--~g~--------~~~ki~vIpNgid~~~f~~~~~--------------------- 286 (475)
T cd03813 238 GRLAYQAADRITTLYEGNRERQIE--DGA--------DPEKIRVIPNGIDPERFAPARR--------------------- 286 (475)
T ss_pred HHHHHHhCCEEEecCHHHHHHHHH--cCC--------CHHHeEEeCCCcCHHHcCCccc---------------------
Confidence 567788999999999987765543 231 5679999999999988866410
Q ss_pred HHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC--CCcEEEEEecCh
Q 006770 566 QCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG--QDVQLSHVGHWQ 622 (632)
Q Consensus 566 ~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~--~dvqLVI~G~G~ 622 (632)
. +. ..+.++|+|+||+.+.||++.|++|+..+.+ .+++|+|+|.|+
T Consensus 287 --------~-~~--~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~ 334 (475)
T cd03813 287 --------A-RP--EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTD 334 (475)
T ss_pred --------c-cc--CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 0 01 1357899999999999999999999998875 489999999984
No 68
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.41 E-value=2.9e-12 Score=145.80 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=68.8
Q ss_pred CCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHH
Q 006770 493 ADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQ 572 (632)
Q Consensus 493 AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lr 572 (632)
||+|+++|.... ++. . ......||||++.|.|... ...+
T Consensus 499 cD~VIaPS~atq-~L~---------------~-~vI~nVnGVDte~F~P~~r------------------------~~~~ 537 (794)
T PLN02501 499 CHKVLRLSAATQ-DLP---------------K-SVICNVHGVNPKFLKIGEK------------------------VAEE 537 (794)
T ss_pred CCEEEcCCHHHH-Hhc---------------c-cceeecccccccccCCcch------------------------hHHH
Confidence 899999996555 321 1 1222237999999988521 1112
Q ss_pred HHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC--CCcEEEEEecChh--hHHHHHHh
Q 006770 573 REFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG--QDVQLSHVGHWQT--RFGRDAEE 631 (632)
Q Consensus 573 k~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~--~dvqLVI~G~G~~--~le~~lke 631 (632)
+++|++. +.+.++|+|||.++||++.||+|++.+.. .+++|+|+|+|+. .+++++++
T Consensus 538 r~lgi~~--~~kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~e 598 (794)
T PLN02501 538 RELGQQA--FSKGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKR 598 (794)
T ss_pred HhcCCcc--ccCceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHH
Confidence 4677653 23458999999999999999999998765 3899999999984 56666654
No 69
>PLN02949 transferase, transferring glycosyl groups
Probab=99.28 E-value=3.5e-10 Score=126.24 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=71.0
Q ss_pred HHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCc
Q 006770 485 IFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGK 564 (632)
Q Consensus 485 i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K 564 (632)
+++...+.||.|+++|+..++.+.+. ++ .+.++.+|+||+|++.|.... .
T Consensus 213 l~~~~~~~ad~ii~nS~~t~~~l~~~-~~---------~~~~i~vvyp~vd~~~~~~~~---~----------------- 262 (463)
T PLN02949 213 MYGLVGRCAHLAMVNSSWTKSHIEAL-WR---------IPERIKRVYPPCDTSGLQALP---L----------------- 262 (463)
T ss_pred HHHHHcCCCCEEEECCHHHHHHHHHH-cC---------CCCCeEEEcCCCCHHHcccCC---c-----------------
Confidence 34556689999999999988887652 11 235789999999986553210 0
Q ss_pred hHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC------CCcEEEEEecCh
Q 006770 565 PQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG------QDVQLSHVGHWQ 622 (632)
Q Consensus 565 ~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~------~dvqLVI~G~G~ 622 (632)
....+.++++++||+.++||++++|+|++.+.+ .+++|+|+|+|+
T Consensus 263 -------------~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~ 313 (463)
T PLN02949 263 -------------ERSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCR 313 (463)
T ss_pred -------------cccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCC
Confidence 001245789999999999999999999998653 379999999974
No 70
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.27 E-value=7.3e-11 Score=124.70 Aligned_cols=87 Identities=21% Similarity=0.148 Sum_probs=69.9
Q ss_pred HHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCc
Q 006770 485 IFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGK 564 (632)
Q Consensus 485 i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K 564 (632)
+++..++.+|.|+++|+..++.+.+. + ..+..+|+||+|.+.|.+..
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~~~~~-~-----------~~~~~vi~~~~d~~~~~~~~--------------------- 192 (351)
T cd03804 146 WDRRSAARVDYFIANSRFVARRIKKY-Y-----------GRDATVIYPPVDTDRFTPAE--------------------- 192 (351)
T ss_pred HHHHHhcCCCEEEECCHHHHHHHHHH-h-----------CCCcEEECCCCCHhhcCcCC---------------------
Confidence 45567789999999999999888642 1 23567999999998775431
Q ss_pred hHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccCCCcEEEEEecChh
Q 006770 565 PQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQT 623 (632)
Q Consensus 565 ~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~~dvqLVI~G~G~~ 623 (632)
...+.++|+||+.++||++.+++|+..+. ++|+|+|+|+.
T Consensus 193 ----------------~~~~~il~~G~~~~~K~~~~li~a~~~~~---~~l~ivG~g~~ 232 (351)
T cd03804 193 ----------------EKEDYYLSVGRLVPYKRIDLAIEAFNKLG---KRLVVIGDGPE 232 (351)
T ss_pred ----------------CCCCEEEEEEcCccccChHHHHHHHHHCC---CcEEEEECChh
Confidence 12457999999999999999999999874 89999999974
No 71
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.20 E-value=1.5e-10 Score=129.07 Aligned_cols=165 Identities=19% Similarity=0.198 Sum_probs=105.0
Q ss_pred CccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHH
Q 006770 408 GNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFA 487 (632)
Q Consensus 408 ~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r 487 (632)
..|+||+||+|-.++|.+++.. ....|+++.+|.. ||...+- .-+|. .-.++
T Consensus 131 ~~d~iwihDyhl~llp~~lr~~------~~~~~i~~f~Hip-----fP~~e~~-~~lp~---------------~~~ll- 182 (460)
T cd03788 131 PGDLVWVHDYHLLLLPQMLRER------GPDARIGFFLHIP-----FPSSEIF-RCLPW---------------REELL- 182 (460)
T ss_pred CCCEEEEeChhhhHHHHHHHhh------CCCCeEEEEEeCC-----CCChHHH-hhCCC---------------hHHHH-
Confidence 5699999999999999887642 2467999999984 3432210 01111 01222
Q ss_pred HHhhcCCeEEEechhHHHHHHHhhc-CCccc----ccc--ccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccc
Q 006770 488 AGLKTADRVVTVSRGYSWELKTAEG-GWGLH----NII--NEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTL 560 (632)
Q Consensus 488 ~~l~~AD~VItVS~~~a~el~~~~~-G~gL~----~il--~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~ 560 (632)
.++..||.|..-+..+++...+... -.++. ..+ .....++.+||||||.+.|.+...
T Consensus 183 ~~~l~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~---------------- 246 (460)
T cd03788 183 RGLLGADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAA---------------- 246 (460)
T ss_pred HHHhcCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhc----------------
Confidence 3455688888888777665544210 00111 000 112357899999999998876421
Q ss_pred cCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccCC------CcEEEEEecC
Q 006770 561 HTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQ------DVQLSHVGHW 621 (632)
Q Consensus 561 ~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~~------dvqLVI~G~G 621 (632)
.+..+..+++..+.. ++.++|+++|||++.||++.+++|++.+++. +++|+++|.+
T Consensus 247 ---~~~~~~~~~~~~~~~--~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~ 308 (460)
T cd03788 247 ---SPEVQERAAELRERL--GGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVP 308 (460)
T ss_pred ---CchhHHHHHHHHHhc--CCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccC
Confidence 122233334444443 3678999999999999999999999988752 3789988753
No 72
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.09 E-value=1.6e-09 Score=116.71 Aligned_cols=230 Identities=13% Similarity=0.066 Sum_probs=127.0
Q ss_pred CCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCe
Q 006770 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGV 355 (632)
Q Consensus 276 ~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV 355 (632)
..|||++++..+ .+|-...+.+|+++|.++||+|.++++.+....+..+.-.+..|. .-+
T Consensus 3 ~~~rili~t~~~-----G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~---------------~~~ 62 (380)
T PRK13609 3 KNPKVLILTAHY-----GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYL---------------KSY 62 (380)
T ss_pred CCCeEEEEEcCC-----CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHH---------------HHH
Confidence 358999999863 459999999999999999999888877653221100000000000 000
Q ss_pred EEEEecCccccc----cCCCCCCCChhhHHHHHH-HHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHh
Q 006770 356 DFVFLDSPLFRH----LGNNIYGGGREDILKRMV-LFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYY 430 (632)
Q Consensus 356 ~v~~I~~p~~~~----~~~~iY~~~~~d~~~r~~-lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~ 430 (632)
. ..|.... .....+.. . .+..+. +..+.+.++++ ..+||+||+|.+... ++.+.+.
T Consensus 63 ~----~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~l~~~l~---------~~~pD~Vi~~~~~~~-~~~~~~~-- 123 (380)
T PRK13609 63 T----IGKELYRLFYYGVEKIYDK-K--IFSWYANFGRKRLKLLLQ---------AEKPDIVINTFPIIA-VPELKKQ-- 123 (380)
T ss_pred H----HhHHHHHHHHhccCcccch-H--HHHHHHHHHHHHHHHHHH---------HhCcCEEEEcChHHH-HHHHHHh--
Confidence 0 0010000 00011110 0 000011 11233445554 358999999843322 3322211
Q ss_pred hhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHh
Q 006770 431 RDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTA 510 (632)
Q Consensus 431 ~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~ 510 (632)
...++|++.++++... .. ++..+.+|.++++|+..++.+.+
T Consensus 124 ----~~~~ip~~~~~td~~~--------------~~--------------------~~~~~~ad~i~~~s~~~~~~l~~- 164 (380)
T PRK13609 124 ----TGISIPTYNVLTDFCL--------------HK--------------------IWVHREVDRYFVATDHVKKVLVD- 164 (380)
T ss_pred ----cCCCCCeEEEeCCCCC--------------Cc--------------------ccccCCCCEEEECCHHHHHHHHH-
Confidence 1246898865555210 00 12235799999999999888775
Q ss_pred hcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCc-EEEEE
Q 006770 511 EGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVP-VIGFI 589 (632)
Q Consensus 511 ~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~p-vIlfV 589 (632)
.| + +++++.++.|.++. .|.+.. .+..+++++|++. +.+ ++++.
T Consensus 165 -~g--i------~~~ki~v~G~p~~~-~f~~~~-----------------------~~~~~~~~~~l~~--~~~~il~~~ 209 (380)
T PRK13609 165 -IG--V------PPEQVVETGIPIRS-SFELKI-----------------------NPDIIYNKYQLCP--NKKILLIMA 209 (380)
T ss_pred -cC--C------ChhHEEEECcccCh-HHcCcC-----------------------CHHHHHHHcCCCC--CCcEEEEEc
Confidence 23 2 56677776444332 232210 1234678899874 444 55667
Q ss_pred cCCccccCHHHHHHHHhhccCCCcEEEEEec
Q 006770 590 GRLDHQKGVDLIAEAIPWMMGQDVQLSHVGH 620 (632)
Q Consensus 590 GRL~~qKGvdlLLeA~~~L~~~dvqLVI~G~ 620 (632)
|++...|+++.+++++... .+++++++|.
T Consensus 210 G~~~~~k~~~~li~~l~~~--~~~~~viv~G 238 (380)
T PRK13609 210 GAHGVLGNVKELCQSLMSV--PDLQVVVVCG 238 (380)
T ss_pred CCCCCCcCHHHHHHHHhhC--CCcEEEEEeC
Confidence 9999899999999988653 5789887753
No 73
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.07 E-value=4.2e-10 Score=126.37 Aligned_cols=285 Identities=18% Similarity=0.186 Sum_probs=142.9
Q ss_pred EecccCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEccCCCCCCC-------CCCcccce---eeeecCccceEEEEEEE
Q 006770 283 VAAECGPWSKTGGLGDVAGALPKALARR-GHRVMVVAPHYGNYAE-------PQDTGIRK---RYRVDRQDIEVAYFQAY 351 (632)
Q Consensus 283 It~e~~P~~~~GGlg~~v~~LakaLakr-GheV~VVtP~y~~~~~-------~~dig~r~---~~~i~g~~~~v~v~~~~ 351 (632)
+++|... ++||+-+++..-|+.+++. |.+.++|.|....... ..+..++. ..+-.| .++.+=+..
T Consensus 2 ~sWEVcN--KVGGIYTVi~tKA~~~~~e~gd~y~lIGP~~~~~~~~e~e~~e~~~~~l~~~~~~~~~~G--l~v~~GRWl 77 (633)
T PF05693_consen 2 VSWEVCN--KVGGIYTVISTKAPTMVEEFGDNYILIGPYNEQNARTEVEEIEPDNPLLKDALESMREEG--LKVRYGRWL 77 (633)
T ss_dssp EETTTTS---SSSHHHHHHHHHHHHHHHHGGGEEEEEE--TTTHHHHEEE--SSSGGHHHHHHHHHHTT---EEEEEEES
T ss_pred chhhhcc--ccCCeehhhhccHHHHHHHHCCeEEEECCCCCcccCCCCCcCCCCCHHHHHHHHHHHhCC--CeEEEecee
Confidence 5677776 7999999999999988764 9999999997543210 00000000 011122 223333445
Q ss_pred ECCeEE-EEecCccccccCCCCC-------CCC---hhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchh
Q 006770 352 IDGVDF-VFLDSPLFRHLGNNIY-------GGG---REDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTA 420 (632)
Q Consensus 352 ~dGV~v-~~I~~p~~~~~~~~iY-------~~~---~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sa 420 (632)
++|.+. ++++...++...+.+| +-. ....+.....|.-++..++..+.. .......-|.|+|+|+++
T Consensus 78 I~G~P~vIL~D~~s~~~~ldeik~~lW~~~gIdS~~~~~dynea~~Fgyava~fi~~f~~--~~~~~~~ViaHfHEWmaG 155 (633)
T PF05693_consen 78 IPGRPIVILFDFGSFFWKLDEIKGELWELFGIDSPHGDGDYNEAVMFGYAVAWFIEEFYK--FYEEKPKVIAHFHEWMAG 155 (633)
T ss_dssp STT--EEEEEEGGGGGGGHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHHHHHH--H-S-SEEEEEEEESGGGT
T ss_pred ECCcCeEEEEeCchHHHHHHHHHHHHHHHcCCCCCCCCcchhHHHHHHHHHHHHHHHHHH--hhcCCCcEEEEechHhHh
Confidence 667664 4445443322111111 100 001122334455555544432110 000124457799999999
Q ss_pred HHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCC----CCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeE
Q 006770 421 LLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRG----PVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRV 496 (632)
Q Consensus 421 llp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~----p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~V 496 (632)
+..++++.. ...+..|+|.|.+.. |+. ..+.+. .++..-.+-. .....--....+++.+...||.+
T Consensus 156 ~gll~lr~~------~~~VaTvFTTHAT~l-GR~l~~~~~~~Y~--~L~~~~~d~e-A~~~~i~~k~~iEraaA~~AdvF 225 (633)
T PF05693_consen 156 VGLLYLRKR------KPDVATVFTTHATLL-GRYLAANNKDFYN--NLDKFNGDQE-AGERNIYHKHSIERAAAHYADVF 225 (633)
T ss_dssp THHHHHHHT------T-SCEEEEEESS-HH-HHHHTTTSS-TTT--SGTTS-HHHH-HHHTT-HHHHHHHHHHHHHSSEE
T ss_pred HHHHHHhcc------CCCeeEEEEecccch-hhHhhcCCCcHHH--HhhccCcccc-ccCccchHHHHHHHHHHHhcCee
Confidence 888777652 257899999998632 221 000010 0110000000 00000013467899999999999
Q ss_pred EEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHH---
Q 006770 497 VTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQR--- 573 (632)
Q Consensus 497 ItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk--- 573 (632)
+|||+-.+.|.... | ...+=.|+|||+|.+.|.... +++.-+..+|+.+.+
T Consensus 226 TTVSeITa~Ea~~L---------L--~r~pDvV~pNGl~v~~~~~~~---------------efqnl~~~~k~ki~~fv~ 279 (633)
T PF05693_consen 226 TTVSEITAKEAEHL---------L--KRKPDVVTPNGLNVDKFPALH---------------EFQNLHAKAKEKIHEFVR 279 (633)
T ss_dssp EESSHHHHHHHHHH---------H--SS--SEE----B-GGGTSSTT---------------HHHHHHHHHHHHHHHHHH
T ss_pred eehhhhHHHHHHHH---------h--CCCCCEEcCCCccccccccch---------------HHHHHHHHHHHHHHHHHH
Confidence 99999999887652 1 122336789999998764321 111112344544433
Q ss_pred -H-hC-CCCC-CCCcEEEEEcCCc-cccCHHHHHHHHhhcc
Q 006770 574 -E-FG-LPVR-DDVPVIGFIGRLD-HQKGVDLIAEAIPWMM 609 (632)
Q Consensus 574 -~-lG-L~~~-~d~pvIlfVGRL~-~qKGvdlLLeA~~~L~ 609 (632)
. +| +.-+ ++..+|...||.. ..||+|++|+|+.+|.
T Consensus 280 ~~f~g~~dfd~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn 320 (633)
T PF05693_consen 280 GHFYGHYDFDLDKTLYFFTSGRYEFRNKGIDVFIEALARLN 320 (633)
T ss_dssp HHSTT---S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHH
T ss_pred HHhcccCCCCccceEEEEeeeceeeecCCccHHHHHHHHHH
Confidence 2 23 1112 2455677889998 6899999999999874
No 74
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.07 E-value=1.5e-09 Score=120.87 Aligned_cols=163 Identities=19% Similarity=0.166 Sum_probs=107.3
Q ss_pred CccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHH
Q 006770 408 GNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFA 487 (632)
Q Consensus 408 ~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r 487 (632)
.-|+|.+||+|-.++|.+++.. ....++.+.+|-. ||...+-. -+|. ..-+-
T Consensus 127 ~~d~vwvhDYhl~l~p~~lr~~------~~~~~igfFlHip-----fP~~e~f~-~lp~----------------r~~il 178 (456)
T TIGR02400 127 PGDIVWVHDYHLMLLPAMLREL------GVQNKIGFFLHIP-----FPSSEIYR-TLPW----------------RRELL 178 (456)
T ss_pred CCCEEEEecchhhHHHHHHHhh------CCCCeEEEEEeCC-----CCChHHHh-hCCc----------------HHHHH
Confidence 4589999999999999998763 2467899999963 44332110 1221 12223
Q ss_pred HHhhcCCeEEEechhHHHHHHHhh---cCCcc--cc-ccccCCCcEEEeeCCCcCCCCCCccccccccCCCccccccccc
Q 006770 488 AGLKTADRVVTVSRGYSWELKTAE---GGWGL--HN-IINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLH 561 (632)
Q Consensus 488 ~~l~~AD~VItVS~~~a~el~~~~---~G~gL--~~-il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~ 561 (632)
.++..||.|..=+..+++...+.. .|... .+ .......++.+||||||++.|.|.....
T Consensus 179 ~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~--------------- 243 (456)
T TIGR02400 179 EGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKP--------------- 243 (456)
T ss_pred HHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcCh---------------
Confidence 567789999999999988776521 11100 00 0112456789999999999987642100
Q ss_pred CCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccCC------CcEEEEEe
Q 006770 562 TGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQ------DVQLSHVG 619 (632)
Q Consensus 562 ~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~~------dvqLVI~G 619 (632)
........++++++ +.++|+++|||++.||++.+++|++.+++. ++.|+++|
T Consensus 244 -~~~~~~~~lr~~~~-----~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~ 301 (456)
T TIGR02400 244 -SVQKRIAELRESLK-----GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIA 301 (456)
T ss_pred -hHHHHHHHHHHHcC-----CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEe
Confidence 00111223566663 568999999999999999999999998642 36788875
No 75
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.07 E-value=9.6e-09 Score=101.30 Aligned_cols=183 Identities=14% Similarity=0.123 Sum_probs=115.3
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEE
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDF 357 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v 357 (632)
-||++|.+-=.|- ..||.++++.+|+..|+++||+|+|.|..... ... .....|+++
T Consensus 2 kkIaIiGtrGIPa-~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~-~~~---------------------~~~y~gv~l 58 (185)
T PF09314_consen 2 KKIAIIGTRGIPA-RYGGFETFVEELAPRLVSKGIDVTVYCRSDYY-PYK---------------------EFEYNGVRL 58 (185)
T ss_pred ceEEEEeCCCCCc-ccCcHHHHHHHHHHHHhcCCceEEEEEccCCC-CCC---------------------CcccCCeEE
Confidence 4899999886774 78999999999999999999999999965322 110 013468888
Q ss_pred EEecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcc-hhHHHHHHHHHhhhcCCC
Q 006770 358 VFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWH-TALLPVYLKAYYRDNGLM 436 (632)
Q Consensus 358 ~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~-sallp~~l~~~~~~~~~~ 436 (632)
+.++.+..-. ...+.+...++...++..+. ...+.||||++..- .+++..+++.+. .
T Consensus 59 ~~i~~~~~g~-------------~~si~yd~~sl~~al~~~~~----~~~~~~ii~ilg~~~g~~~~~~~r~~~-----~ 116 (185)
T PF09314_consen 59 VYIPAPKNGS-------------AESIIYDFLSLLHALRFIKQ----DKIKYDIILILGYGIGPFFLPFLRKLR-----K 116 (185)
T ss_pred EEeCCCCCCc-------------hHHHHHHHHHHHHHHHHHhh----ccccCCEEEEEcCCccHHHHHHHHhhh-----h
Confidence 8886553210 01122222233333321110 02368899999765 344444444321 2
Q ss_pred CCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCcc
Q 006770 437 QYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGL 516 (632)
Q Consensus 437 ~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL 516 (632)
.+.|+++++|++++. +.- .+. ..+.| ...-|+.+.++||.+|+-|+.+.+.+.+. +
T Consensus 117 ~g~~v~vN~DGlEWk----R~K---W~~------~~k~~------lk~~E~~avk~ad~lIaDs~~I~~y~~~~-y---- 172 (185)
T PF09314_consen 117 KGGKVVVNMDGLEWK----RAK---WGR------PAKKY------LKFSEKLAVKYADRLIADSKGIQDYIKER-Y---- 172 (185)
T ss_pred cCCcEEECCCcchhh----hhh---cCH------HHHHH------HHHHHHHHHHhCCEEEEcCHHHHHHHHHH-c----
Confidence 477999999998643 110 111 11112 12346678899999999999999888763 2
Q ss_pred ccccccCCCcEEEeeCCCc
Q 006770 517 HNIINEVDWKLSGIVNGID 535 (632)
Q Consensus 517 ~~il~~~~~Ki~vIpNGID 535 (632)
...+.+.|++|-|
T Consensus 173 ------~~~~s~~IaYGad 185 (185)
T PF09314_consen 173 ------GRKKSTFIAYGAD 185 (185)
T ss_pred ------CCCCcEEecCCCC
Confidence 2367889999976
No 76
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.00 E-value=9.1e-09 Score=112.60 Aligned_cols=101 Identities=20% Similarity=0.083 Sum_probs=76.4
Q ss_pred HHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCc
Q 006770 485 IFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGK 564 (632)
Q Consensus 485 i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K 564 (632)
+.+..+..+|+|+++|+..++.+.+. ++ ....++.+|+||+|...+.+..
T Consensus 176 ~~~~~~~~~d~ii~~S~~~~~~l~~~-~~--------~~~~ki~vi~~gv~~~~~~~~~--------------------- 225 (407)
T cd04946 176 LRRYLLSSLDAVFPCSEQGRNYLQKR-YP--------AYKEKIKVSYLGVSDPGIISKP--------------------- 225 (407)
T ss_pred HHHHHHhcCCEEEECCHHHHHHHHHH-CC--------CccccEEEEECCcccccccCCC---------------------
Confidence 34556789999999999998887653 22 2467899999999986553310
Q ss_pred hHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccCC----CcEEEEEecChh--hHHHHH
Q 006770 565 PQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQ----DVQLSHVGHWQT--RFGRDA 629 (632)
Q Consensus 565 ~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~~----dvqLVI~G~G~~--~le~~l 629 (632)
..++.+.|+++||+.+.||++.|++|+..+.+. +++|+++|+|+. .+++.+
T Consensus 226 --------------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~ 282 (407)
T cd04946 226 --------------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELA 282 (407)
T ss_pred --------------CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHH
Confidence 012467899999999999999999999998753 678899999873 444444
No 77
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.95 E-value=7.4e-09 Score=116.71 Aligned_cols=100 Identities=15% Similarity=0.084 Sum_probs=73.0
Q ss_pred hhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHH
Q 006770 490 LKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKA 569 (632)
Q Consensus 490 l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~ 569 (632)
++.+|+||++|+..++.+....... .....++.+||||++...+.|..
T Consensus 268 ~~~~D~iI~~S~~~~~~l~~~~~~~------~~~~~ki~viP~g~~~~~~~~~~-------------------------- 315 (500)
T TIGR02918 268 ADYIDFFITATDIQNQILKNQFKKY------YNIEPRIYTIPVGSLDELQYPEQ-------------------------- 315 (500)
T ss_pred hhhCCEEEECCHHHHHHHHHHhhhh------cCCCCcEEEEcCCCcccccCccc--------------------------
Confidence 4678999999999888876531100 01357899999998754433210
Q ss_pred HHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC--CCcEEEEEecChh--hHHHHHHh
Q 006770 570 ALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG--QDVQLSHVGHWQT--RFGRDAEE 631 (632)
Q Consensus 570 ~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~--~dvqLVI~G~G~~--~le~~lke 631 (632)
..+..+|+|+|||.++||++.|++|+..+.+ .+++|+|+|+|+. .+++.+++
T Consensus 316 ----------~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~ 371 (500)
T TIGR02918 316 ----------ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINE 371 (500)
T ss_pred ----------ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHH
Confidence 0134589999999999999999999999875 4899999999973 55555544
No 78
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.94 E-value=4.4e-08 Score=107.30 Aligned_cols=157 Identities=14% Similarity=0.073 Sum_probs=98.3
Q ss_pred CCccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHH
Q 006770 407 DGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIF 486 (632)
Q Consensus 407 ~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~ 486 (632)
++||++|+|+... .|.++.... ..++|+|++-|.+... .+. .+ ++ ...++
T Consensus 123 ~~Pd~v~~~~~~~--~~~~l~~~~-----~~~ip~vl~~~~~~~~------s~~------~~----~~-------~~~~~ 172 (425)
T PRK05749 123 WRPKLVIIMETEL--WPNLIAELK-----RRGIPLVLANARLSER------SFK------RY----QK-------FKRFY 172 (425)
T ss_pred hCCCEEEEEecch--hHHHHHHHH-----HCCCCEEEEeccCChh------hHH------HH----HH-------HHHHH
Confidence 5899999985332 232222211 2578999875553110 000 00 00 12345
Q ss_pred HHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchH
Q 006770 487 AAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQ 566 (632)
Q Consensus 487 r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~ 566 (632)
+..++.+|.|+++|+..++.+.+ .| . +.+ +.+++|+ +.+.+.+.. ...
T Consensus 173 r~~~~~~d~ii~~S~~~~~~l~~--~g--~------~~~-i~vi~n~-~~d~~~~~~--------------------~~~ 220 (425)
T PRK05749 173 RLLFKNIDLVLAQSEEDAERFLA--LG--A------KNE-VTVTGNL-KFDIEVPPE--------------------LAA 220 (425)
T ss_pred HHHHHhCCEEEECCHHHHHHHHH--cC--C------CCC-cEecccc-cccCCCChh--------------------hHH
Confidence 66778899999999999988774 23 2 445 7888884 333332210 012
Q ss_pred HHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC--CCcEEEEEecChh---hHHHHHHh
Q 006770 567 CKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG--QDVQLSHVGHWQT---RFGRDAEE 631 (632)
Q Consensus 567 ~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~--~dvqLVI~G~G~~---~le~~lke 631 (632)
.+..++++++ + +.++|+++|+. .|+.+.|++|++.+.+ .+++|+|+|+|+. ++++++++
T Consensus 221 ~~~~~r~~~~-~---~~~vil~~~~~--~~~~~~ll~A~~~l~~~~~~~~liivG~g~~r~~~l~~~~~~ 284 (425)
T PRK05749 221 RAATLRRQLA-P---NRPVWIAASTH--EGEEELVLDAHRALLKQFPNLLLILVPRHPERFKEVEELLKK 284 (425)
T ss_pred HHHHHHHHhc-C---CCcEEEEeCCC--chHHHHHHHHHHHHHHhCCCcEEEEcCCChhhHHHHHHHHHh
Confidence 2345677777 3 56788999875 6889999999998765 5899999999974 45555543
No 79
>PHA01630 putative group 1 glycosyl transferase
Probab=98.91 E-value=1.1e-08 Score=109.51 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=72.9
Q ss_pred HHHHH-hhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCC
Q 006770 485 IFAAG-LKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTG 563 (632)
Q Consensus 485 i~r~~-l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~ 563 (632)
++... .+.||+|+++|+..++.+.+. |.. .+.++.+||||||.+.|.|...
T Consensus 86 ~~~~~~~~~ad~ii~~S~~~~~~l~~~--g~~-------~~~~i~vIpNGVd~~~f~~~~~------------------- 137 (331)
T PHA01630 86 ALYFFRNQPVDEIVVPSQWSKNAFYTS--GLK-------IPQPIYVIPHNLNPRMFEYKPK------------------- 137 (331)
T ss_pred HHHHHhhccCCEEEECCHHHHHHHHHc--CCC-------CCCCEEEECCCCCHHHcCCCcc-------------------
Confidence 34445 578999999999999887652 210 1468999999999988865310
Q ss_pred chHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC--CCcEEEEEecChh
Q 006770 564 KPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG--QDVQLSHVGHWQT 623 (632)
Q Consensus 564 K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~--~dvqLVI~G~G~~ 623 (632)
. ..+..+|+++||+.++||++.|++|++.+.+ .+++|+|+|+|..
T Consensus 138 -~--------------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~ 184 (331)
T PHA01630 138 -E--------------KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML 184 (331)
T ss_pred -c--------------cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc
Confidence 0 0134577788899999999999999999875 4899999998754
No 80
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=98.85 E-value=4.3e-08 Score=106.30 Aligned_cols=97 Identities=18% Similarity=0.126 Sum_probs=74.4
Q ss_pred hcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHH
Q 006770 491 KTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAA 570 (632)
Q Consensus 491 ~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~ 570 (632)
+.+|.++++|+..++++.+ .|. +++|+.+++++||.+.+.+. ..+..
T Consensus 149 ~~~d~~~~~s~~~~~~l~~--~g~--------~~~ki~v~g~~v~~~f~~~~-----------------------~~~~~ 195 (382)
T PLN02605 149 KGVTRCFCPSEEVAKRALK--RGL--------EPSQIRVYGLPIRPSFARAV-----------------------RPKDE 195 (382)
T ss_pred CCCCEEEECCHHHHHHHHH--cCC--------CHHHEEEECcccCHhhccCC-----------------------CCHHH
Confidence 5799999999999888775 332 67899999888886543321 12455
Q ss_pred HHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcc------CCCcE-EEEEecCh
Q 006770 571 LQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMM------GQDVQ-LSHVGHWQ 622 (632)
Q Consensus 571 Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~------~~dvq-LVI~G~G~ 622 (632)
+++++|++ ++.++|+++||....|++..+++++..+. ..+++ ++++|.++
T Consensus 196 ~r~~~gl~--~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~ 252 (382)
T PLN02605 196 LRRELGMD--EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK 252 (382)
T ss_pred HHHHcCCC--CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH
Confidence 78899997 36899999999999999999999998754 24565 67788775
No 81
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.77 E-value=9.8e-08 Score=101.61 Aligned_cols=91 Identities=19% Similarity=0.107 Sum_probs=70.6
Q ss_pred HhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHH
Q 006770 489 GLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCK 568 (632)
Q Consensus 489 ~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k 568 (632)
.+..+|.|+++|+..++.+... ++ ...++.+||||+|...+.+..
T Consensus 154 ~~~~~d~ii~~s~~~~~~l~~~-~~---------~~~~v~~ip~g~~~~~~~~~~------------------------- 198 (372)
T cd04949 154 NLDKVDGVIVATEQQKQDLQKQ-FG---------NYNPIYTIPVGSIDPLKLPAQ------------------------- 198 (372)
T ss_pred ChhhCCEEEEccHHHHHHHHHH-hC---------CCCceEEEcccccChhhcccc-------------------------
Confidence 3578999999999988888753 21 234589999999987665420
Q ss_pred HHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC--CCcEEEEEecChh
Q 006770 569 AALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG--QDVQLSHVGHWQT 623 (632)
Q Consensus 569 ~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~--~dvqLVI~G~G~~ 623 (632)
.. ......|+++||+.++||++.+++|+..+.. .+++|+|+|.|+.
T Consensus 199 -------~~--~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~ 246 (372)
T cd04949 199 -------FK--QRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDE 246 (372)
T ss_pred -------hh--hcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCch
Confidence 00 0245689999999999999999999999875 4899999999874
No 82
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.74 E-value=7.3e-08 Score=113.33 Aligned_cols=164 Identities=20% Similarity=0.171 Sum_probs=103.4
Q ss_pred CccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHH
Q 006770 408 GNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFA 487 (632)
Q Consensus 408 ~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r 487 (632)
.-|+|.+||+|-.++|.+++.. ....++-+.+|-. ||...+.. -+|. ..-+-
T Consensus 133 ~~d~vwvhDYhl~l~p~~lr~~------~~~~~igfFlH~p-----fP~~~~f~-~lp~----------------~~~ll 184 (726)
T PRK14501 133 PGDVVWVHDYQLMLLPAMLRER------LPDARIGFFLHIP-----FPSFEVFR-LLPW----------------REEIL 184 (726)
T ss_pred CCCEEEEeCchhhhHHHHHHhh------CCCCcEEEEeeCC-----CCChHHHh-hCCC----------------hHHHH
Confidence 3599999999999999998753 2467889999984 44432211 1221 11122
Q ss_pred HHhhcCCeEEEechhHHHHHHHhhc-CCccc---cc--cccCCCcEEEeeCCCcCCCCCCccccccccCCCccccccccc
Q 006770 488 AGLKTADRVVTVSRGYSWELKTAEG-GWGLH---NI--INEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLH 561 (632)
Q Consensus 488 ~~l~~AD~VItVS~~~a~el~~~~~-G~gL~---~i--l~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~ 561 (632)
.++..||.|-.=+..+++...+... -+|+. .. +.....++.+||||||++.|.+.... .
T Consensus 185 ~~ll~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~------------~--- 249 (726)
T PRK14501 185 EGLLGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQD------------P--- 249 (726)
T ss_pred HHHhcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcC------------c---
Confidence 4556788877777777766543210 00100 00 01123468999999999998764210 0
Q ss_pred CCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccCC------CcEEEEEec
Q 006770 562 TGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQ------DVQLSHVGH 620 (632)
Q Consensus 562 ~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~~------dvqLVI~G~ 620 (632)
........+++.++ +.++|+++|||++.||+..+++|++.+++. +++|+++|.
T Consensus 250 -~~~~~~~~lr~~~~-----~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~ 308 (726)
T PRK14501 250 -EVQEEIRRLRQDLR-----GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAV 308 (726)
T ss_pred -hHHHHHHHHHHHcC-----CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEec
Confidence 00111223444432 567999999999999999999999998752 478999973
No 83
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.74 E-value=1.2e-07 Score=112.49 Aligned_cols=154 Identities=22% Similarity=0.263 Sum_probs=98.3
Q ss_pred CccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHH
Q 006770 408 GNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFA 487 (632)
Q Consensus 408 ~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r 487 (632)
.-|+|-+||+|-.++|.+++.. ....++.+.+|.. ||...+.+ -+|. .-.+ -
T Consensus 147 ~~d~vWvhDYhL~llp~~lR~~------~~~~~igfFlHiP-----FPs~e~fr-~lp~---------------r~~i-l 198 (797)
T PLN03063 147 EGDVVWCHDYHLMFLPQYLKEY------NNKMKVGWFLHTP-----FPSSEIYK-TLPS---------------RSEL-L 198 (797)
T ss_pred CCCEEEEecchhhhHHHHHHHh------CCCCcEEEEecCC-----CCCHHHHh-hCCC---------------HHHH-H
Confidence 3489999999999999998764 3578999999984 45432110 1111 0122 2
Q ss_pred HHhhcCCeEEEechhHHHHHHHhhcC-Cccc----ccc-ccCCCcEEEeeCCCcCCCCCCccccccccCCCccccccccc
Q 006770 488 AGLKTADRVVTVSRGYSWELKTAEGG-WGLH----NII-NEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLH 561 (632)
Q Consensus 488 ~~l~~AD~VItVS~~~a~el~~~~~G-~gL~----~il-~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~ 561 (632)
.++-.||.|-.-+..+++...+.... .|+. .+. .....++.+||||||.+.|.+.... .
T Consensus 199 ~gll~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~------------~--- 263 (797)
T PLN03063 199 RAVLTADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCEL------------P--- 263 (797)
T ss_pred HHHhcCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcC------------h---
Confidence 45667888888888887766542100 0111 010 1123578899999999888653210 0
Q ss_pred CCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC
Q 006770 562 TGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG 610 (632)
Q Consensus 562 ~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~ 610 (632)
........++++++ +.++|+++|||++.||++.+++|++.+++
T Consensus 264 -~~~~~~~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Afe~lL~ 306 (797)
T PLN03063 264 -EVKQHMKELKRFFA-----GRKVILGVDRLDMIKGIPQKYLAFEKFLE 306 (797)
T ss_pred -hHHHHHHHHHHhcC-----CCeEEEEecccccccCHHHHHHHHHHHHH
Confidence 00111223455544 46899999999999999999999999875
No 84
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.71 E-value=1.6e-07 Score=99.74 Aligned_cols=159 Identities=15% Similarity=0.043 Sum_probs=98.5
Q ss_pred CCccEEEEcCcc-hhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHH
Q 006770 407 DGNLVFIANDWH-TALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNI 485 (632)
Q Consensus 407 ~~pDIIHaHdw~-sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i 485 (632)
.+||+||+|.+. ..+++..++. ..++|+|++.|+... +.. +.+.. ..
T Consensus 87 ~~pDvV~~~g~~~~~~~~~~aa~-------~~~iPvv~~~~g~~s---~~~------~~~~~---------------~~- 134 (363)
T cd03786 87 EKPDLVLVLGDTNETLAAALAAF-------KLGIPVAHVEAGLRS---FDR------GMPDE---------------EN- 134 (363)
T ss_pred hCCCEEEEeCCchHHHHHHHHHH-------HcCCCEEEEeccccc---CCC------CCCch---------------HH-
Confidence 589999999643 3444433332 258999977776311 000 00000 00
Q ss_pred HHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCC-cCCCCCCccccccccCCCcccccccccCCc
Q 006770 486 FAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGI-DTKEWSPMYDIHLTSDGYTNYCLDTLHTGK 564 (632)
Q Consensus 486 ~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGI-D~~~F~P~~~~~l~~~~~~~~s~ed~~~~K 564 (632)
-....+.+|.++++|+..++.+.+ .| + +++++.+|+|++ |...|.+... +
T Consensus 135 r~~~~~~ad~~~~~s~~~~~~l~~--~G--~------~~~kI~vign~v~d~~~~~~~~~-------------------~ 185 (363)
T cd03786 135 RHAIDKLSDLHFAPTEEARRNLLQ--EG--E------PPERIFVVGNTMIDALLRLLELA-------------------K 185 (363)
T ss_pred HHHHHHHhhhccCCCHHHHHHHHH--cC--C------CcccEEEECchHHHHHHHHHHhh-------------------c
Confidence 012346789999999998888764 23 2 678999999995 5433221100 0
Q ss_pred hHHHHHHHHHhCCCCCCCCcEEEEEcCCcc---ccCHHHHHHHHhhccCCCcEEEEEecCh--hhHHHHHHh
Q 006770 565 PQCKAALQREFGLPVRDDVPVIGFIGRLDH---QKGVDLIAEAIPWMMGQDVQLSHVGHWQ--TRFGRDAEE 631 (632)
Q Consensus 565 ~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~---qKGvdlLLeA~~~L~~~dvqLVI~G~G~--~~le~~lke 631 (632)
....++.++++ ++..++++.||+.. .||++.|++|+..+...++++++.|+++ ..+++.+++
T Consensus 186 ---~~~~~~~~~~~--~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~ 252 (363)
T cd03786 186 ---KELILELLGLL--PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLE 252 (363)
T ss_pred ---cchhhhhcccC--CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHh
Confidence 01123567775 24457789999875 7999999999998864467888777765 566665543
No 85
>PHA01633 putative glycosyl transferase group 1
Probab=98.70 E-value=2e-07 Score=100.20 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=72.4
Q ss_pred HHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHH
Q 006770 488 AGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQC 567 (632)
Q Consensus 488 ~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~ 567 (632)
..+...+++|++|+..++.+.+ .|+ +. .+ .|+||||++.|.|... .
T Consensus 88 ~~m~~~~~vIavS~~t~~~L~~--~G~--------~~-~i-~I~~GVD~~~f~p~~~----------------------~ 133 (335)
T PHA01633 88 KYLLQDVKFIPNSKFSAENLQE--VGL--------QV-DL-PVFHGINFKIVENAEK----------------------L 133 (335)
T ss_pred HHHhcCCEEEeCCHHHHHHHHH--hCC--------CC-ce-eeeCCCChhhcCccch----------------------h
Confidence 3445567999999999988875 232 22 23 5889999999877421 1
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccCC------CcEEEEEecC
Q 006770 568 KAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQ------DVQLSHVGHW 621 (632)
Q Consensus 568 k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~~------dvqLVI~G~G 621 (632)
...++++++... ++.++|+++||++++||++.|++|++.+.+. +++|+++|.+
T Consensus 134 ~~~~r~~~~~~~-~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~ 192 (335)
T PHA01633 134 VPQLKQKLDKDF-PDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK 192 (335)
T ss_pred hHHHHHHhCcCC-CCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH
Confidence 134566776542 3678999999999999999999999998742 4688888853
No 86
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.69 E-value=2.5e-07 Score=85.06 Aligned_cols=138 Identities=18% Similarity=0.246 Sum_probs=82.5
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEE
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFV 358 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~ 358 (632)
||++++... ..++.+++++|.++|++|.|+++.... ... ....|+.++
T Consensus 1 KIl~i~~~~---------~~~~~~~~~~L~~~g~~V~ii~~~~~~-~~~----------------------~~~~~i~~~ 48 (139)
T PF13477_consen 1 KILLIGNTP---------STFIYNLAKELKKRGYDVHIITPRNDY-EKY----------------------EIIEGIKVI 48 (139)
T ss_pred CEEEEecCc---------HHHHHHHHHHHHHCCCEEEEEEcCCCc-hhh----------------------hHhCCeEEE
Confidence 688887642 357889999999999999999984332 110 124566666
Q ss_pred EecCccccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcch-hHHHHHHHHHhhhcCCCC
Q 006770 359 FLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHT-ALLPVYLKAYYRDNGLMQ 437 (632)
Q Consensus 359 ~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~s-allp~~l~~~~~~~~~~~ 437 (632)
.++.+. +... . .+.+ ..+.++++ ..+|||||+|...+ ++++.+++.. ..
T Consensus 49 ~~~~~~-----k~~~-----~---~~~~--~~l~k~ik---------~~~~DvIh~h~~~~~~~~~~l~~~~------~~ 98 (139)
T PF13477_consen 49 RLPSPR-----KSPL-----N---YIKY--FRLRKIIK---------KEKPDVIHCHTPSPYGLFAMLAKKL------LK 98 (139)
T ss_pred EecCCC-----CccH-----H---HHHH--HHHHHHhc---------cCCCCEEEEecCChHHHHHHHHHHH------cC
Confidence 664321 0000 1 1111 13334444 35899999998665 5656544432 12
Q ss_pred CCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEec
Q 006770 438 YTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVS 500 (632)
Q Consensus 438 ~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS 500 (632)
.+|+|+|+|+..+... +. . . ++ ...+++.+++.||.|++.|
T Consensus 99 ~~~~i~~~hg~~~~~~-~~----------~-~---~~-------~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 99 NKKVIYTVHGSDFYNS-SK----------K-K---KL-------KKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred CCCEEEEecCCeeecC-Cc----------h-H---HH-------HHHHHHHHHHhCCEEEEcC
Confidence 3899999998632100 00 0 0 00 1245678889999999875
No 87
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=98.69 E-value=2.1e-07 Score=104.46 Aligned_cols=166 Identities=18% Similarity=0.170 Sum_probs=108.7
Q ss_pred CccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHH
Q 006770 408 GNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFA 487 (632)
Q Consensus 408 ~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r 487 (632)
.-|+|-+||+|-.++|.+++.. ....++-+.+|.. ||...+.. -+|. .-.++
T Consensus 132 ~~d~vWVhDYhL~llp~~LR~~------~~~~~IgfFlHiP-----FPs~eifr-~LP~---------------r~~ll- 183 (487)
T TIGR02398 132 EGATVWVHDYNLWLVPGYIRQL------RPDLKIAFFHHTP-----FPSADVFN-ILPW---------------REQII- 183 (487)
T ss_pred CCCEEEEecchhhHHHHHHHHh------CCCCeEEEEeeCC-----CCChHHHh-hCCc---------------hHHHH-
Confidence 3589999999999999998763 2467888988884 45432210 1221 11222
Q ss_pred HHhhcCCeEEEechhHHHHHHHhhcC-Cccccc------------------------cc--cCCCcEEEeeCCCcCCCCC
Q 006770 488 AGLKTADRVVTVSRGYSWELKTAEGG-WGLHNI------------------------IN--EVDWKLSGIVNGIDTKEWS 540 (632)
Q Consensus 488 ~~l~~AD~VItVS~~~a~el~~~~~G-~gL~~i------------------------l~--~~~~Ki~vIpNGID~~~F~ 540 (632)
.++-.||.|-.=+..+++...+.... .|+... +. ...-++.++|.|||.+.|.
T Consensus 184 ~glL~aDliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~ 263 (487)
T TIGR02398 184 GSLLCCDYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIR 263 (487)
T ss_pred HHHhcCCeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHH
Confidence 45567888888888877666542100 011100 00 1223478999999999886
Q ss_pred CccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccCC------CcE
Q 006770 541 PMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQ------DVQ 614 (632)
Q Consensus 541 P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~~------dvq 614 (632)
+.... .......+.+++++| +.++|++++||++.||+...++|++++++. ++.
T Consensus 264 ~~~~~----------------~~~~~~~~~lr~~~~-----~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~ 322 (487)
T TIGR02398 264 SALAA----------------ASIREMMERIRSELA-----GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVT 322 (487)
T ss_pred HHhcC----------------chHHHHHHHHHHHcC-----CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceE
Confidence 54210 011223455788887 468999999999999999999999998752 589
Q ss_pred EEEEecCh
Q 006770 615 LSHVGHWQ 622 (632)
Q Consensus 615 LVI~G~G~ 622 (632)
||++|.+.
T Consensus 323 Lvqi~~ps 330 (487)
T TIGR02398 323 LVTACVPA 330 (487)
T ss_pred EEEEeCCC
Confidence 99999763
No 88
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.61 E-value=5.5e-06 Score=89.53 Aligned_cols=98 Identities=19% Similarity=0.168 Sum_probs=71.0
Q ss_pred HHHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCC
Q 006770 484 NIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTG 563 (632)
Q Consensus 484 ~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~ 563 (632)
.+++..++.||.|+++|+.+.+.+.. ...++.+|+||||.+.|.+....
T Consensus 145 ~~e~~~~~~ad~vi~~S~~l~~~~~~-------------~~~~i~~i~ngvd~~~f~~~~~~------------------ 193 (373)
T cd04950 145 EAERRLLKRADLVFTTSPSLYEAKRR-------------LNPNVVLVPNGVDYEHFAAARDP------------------ 193 (373)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHhh-------------CCCCEEEcccccCHHHhhccccc------------------
Confidence 46778889999999999998876653 12689999999999988764210
Q ss_pred chHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccCCCcEEEEEecCh
Q 006770 564 KPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQ 622 (632)
Q Consensus 564 K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~~dvqLVI~G~G~ 622 (632)
... .+.... .+.++|+|+|++.+.+++++|.+++.. ..+++|+|+|.|+
T Consensus 194 --~~~--~~~~~~----~~~~~i~y~G~l~~~~d~~ll~~la~~--~p~~~~vliG~~~ 242 (373)
T cd04950 194 --PPP--PADLAA----LPRPVIGYYGAIAEWLDLELLEALAKA--RPDWSFVLIGPVD 242 (373)
T ss_pred --CCC--hhHHhc----CCCCEEEEEeccccccCHHHHHHHHHH--CCCCEEEEECCCc
Confidence 000 011111 257899999999998888877665553 2589999999983
No 89
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=98.60 E-value=1.7e-06 Score=94.46 Aligned_cols=95 Identities=15% Similarity=0.112 Sum_probs=64.9
Q ss_pred hcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHH
Q 006770 491 KTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAA 570 (632)
Q Consensus 491 ~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~ 570 (632)
..+|.++++|+..++.+.+ .| + +.+++.++.|.|+.. |.+. ..+.+
T Consensus 146 ~~~d~~~v~s~~~~~~l~~--~g--i------~~~ki~v~GiPv~~~-f~~~-----------------------~~~~~ 191 (391)
T PRK13608 146 PYSTRYYVATKETKQDFID--VG--I------DPSTVKVTGIPIDNK-FETP-----------------------IDQKQ 191 (391)
T ss_pred CCCCEEEECCHHHHHHHHH--cC--C------CHHHEEEECeecChH-hccc-----------------------ccHHH
Confidence 5799999999999888875 23 2 567888876666532 3211 01235
Q ss_pred HHHHhCCCCCCCCc-EEEEEcCCccccCHHHHHHHHhhccCCCcEEEEE-ecCh
Q 006770 571 LQREFGLPVRDDVP-VIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHV-GHWQ 622 (632)
Q Consensus 571 Lrk~lGL~~~~d~p-vIlfVGRL~~qKGvdlLLeA~~~L~~~dvqLVI~-G~G~ 622 (632)
+++++|++. +.+ ++++.||+...||++.+++++... ..+++++++ |.++
T Consensus 192 ~~~~~~l~~--~~~~ilv~~G~lg~~k~~~~li~~~~~~-~~~~~~vvv~G~~~ 242 (391)
T PRK13608 192 WLIDNNLDP--DKQTILMSAGAFGVSKGFDTMITDILAK-SANAQVVMICGKSK 242 (391)
T ss_pred HHHHcCCCC--CCCEEEEECCCcccchhHHHHHHHHHhc-CCCceEEEEcCCCH
Confidence 677899874 444 556799999999999999986432 247888766 5443
No 90
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.56 E-value=1.1e-06 Score=94.43 Aligned_cols=140 Identities=16% Similarity=0.050 Sum_probs=79.4
Q ss_pred CCccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHH
Q 006770 407 DGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIF 486 (632)
Q Consensus 407 ~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~ 486 (632)
++||+||+|++.+.... ++.. .+ ..++|++++.|+..+. + .+ + ..
T Consensus 84 ~kPdivi~~~~~~~~~~-~a~~-a~----~~~ip~i~~~~~~~~~--~---------~~--------------~-~~--- 128 (380)
T PRK00025 84 EPPDVFIGIDAPDFNLR-LEKK-LR----KAGIPTIHYVSPSVWA--W---------RQ--------------G-RA--- 128 (380)
T ss_pred cCCCEEEEeCCCCCCHH-HHHH-HH----HCCCCEEEEeCCchhh--c---------Cc--------------h-HH---
Confidence 58999999985432221 1211 11 2479999877663110 0 00 0 11
Q ss_pred HHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchH
Q 006770 487 AAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQ 566 (632)
Q Consensus 487 r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~ 566 (632)
+...+.+|.|+++|+..++.+.. .| .++.++.|.+.. +.+. ..
T Consensus 129 ~~~~~~~d~i~~~~~~~~~~~~~--~g-----------~~~~~~G~p~~~--~~~~----------------------~~ 171 (380)
T PRK00025 129 FKIAKATDHVLALFPFEAAFYDK--LG-----------VPVTFVGHPLAD--AIPL----------------------LP 171 (380)
T ss_pred HHHHHHHhhheeCCccCHHHHHh--cC-----------CCeEEECcCHHH--hccc----------------------cc
Confidence 12356789999999877766543 11 124444443322 1110 00
Q ss_pred HHHHHHHHhCCCCCCCCcEE-EEEc-CCccc-cCHHHHHHHHhhccC--CCcEEEEEec
Q 006770 567 CKAALQREFGLPVRDDVPVI-GFIG-RLDHQ-KGVDLIAEAIPWMMG--QDVQLSHVGH 620 (632)
Q Consensus 567 ~k~~Lrk~lGL~~~~d~pvI-lfVG-RL~~q-KGvdlLLeA~~~L~~--~dvqLVI~G~ 620 (632)
.+..+++++|++. +.++| ++.| |.... ++++.+++|++.+.+ .+++|+++|.
T Consensus 172 ~~~~~~~~l~~~~--~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~ 228 (380)
T PRK00025 172 DRAAARARLGLDP--DARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLV 228 (380)
T ss_pred ChHHHHHHcCCCC--CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 1234677899873 45654 4445 55554 447899999998864 3789999986
No 91
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.51 E-value=3e-06 Score=81.69 Aligned_cols=36 Identities=33% Similarity=0.559 Sum_probs=33.1
Q ss_pred EEcCCccccCHHHHHHHHhhccCC--CcEEEEEecChh
Q 006770 588 FIGRLDHQKGVDLIAEAIPWMMGQ--DVQLSHVGHWQT 623 (632)
Q Consensus 588 fVGRL~~qKGvdlLLeA~~~L~~~--dvqLVI~G~G~~ 623 (632)
|+||+.+.||++.+++|+..+.+. +++|+++|.++.
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~ 146 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPDLKLVIAGDGPE 146 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Confidence 999999999999999999998764 899999999874
No 92
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.37 E-value=3.6e-06 Score=90.38 Aligned_cols=151 Identities=17% Similarity=0.037 Sum_probs=91.6
Q ss_pred CCccEEEEc-CcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHH
Q 006770 407 DGNLVFIAN-DWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNI 485 (632)
Q Consensus 407 ~~pDIIHaH-dw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i 485 (632)
.+||+||+| |+.++++++.++. ..++|++++-++....+.+ ..++. ..
T Consensus 85 ~~pDiv~~~gd~~~~la~a~aa~-------~~~ipv~h~~~g~~s~~~~-------~~~~~-----------------~~ 133 (365)
T TIGR00236 85 EKPDIVLVQGDTTTTLAGALAAF-------YLQIPVGHVEAGLRTGDRY-------SPMPE-----------------EI 133 (365)
T ss_pred cCCCEEEEeCCchHHHHHHHHHH-------HhCCCEEEEeCCCCcCCCC-------CCCcc-----------------HH
Confidence 579999999 5766666655443 2589987654443110000 00110 01
Q ss_pred HHHH-hhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCC-cCCCCCCccccccccCCCcccccccccCC
Q 006770 486 FAAG-LKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGI-DTKEWSPMYDIHLTSDGYTNYCLDTLHTG 563 (632)
Q Consensus 486 ~r~~-l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGI-D~~~F~P~~~~~l~~~~~~~~s~ed~~~~ 563 (632)
.+.. .+.||.++++|+..++.+.+ .| + +++++.+++||+ |...+.+..
T Consensus 134 ~r~~~~~~ad~~~~~s~~~~~~l~~--~G--~------~~~~I~vign~~~d~~~~~~~~-------------------- 183 (365)
T TIGR00236 134 NRQLTGHIADLHFAPTEQAKDNLLR--EN--V------KADSIFVTGNTVIDALLTNVEI-------------------- 183 (365)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHH--cC--C------CcccEEEeCChHHHHHHHHHhh--------------------
Confidence 1222 24589999999999998875 23 2 678999999996 432221100
Q ss_pred chHHHHHHHHHhCCCCCCCCcEEEEEc-CC-ccccCHHHHHHHHhhccC--CCcEEEEEecChhh
Q 006770 564 KPQCKAALQREFGLPVRDDVPVIGFIG-RL-DHQKGVDLIAEAIPWMMG--QDVQLSHVGHWQTR 624 (632)
Q Consensus 564 K~~~k~~Lrk~lGL~~~~d~pvIlfVG-RL-~~qKGvdlLLeA~~~L~~--~dvqLVI~G~G~~~ 624 (632)
..+..++++++. +.+++++.+ |. ...||++.|++|+..+.+ .+++++++|.+..+
T Consensus 184 --~~~~~~~~~~~~----~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~ 242 (365)
T TIGR00236 184 --AYSSPVLSEFGE----DKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLNPV 242 (365)
T ss_pred --ccchhHHHhcCC----CCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCChH
Confidence 011235566663 235666655 54 346999999999998864 37899998765433
No 93
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.31 E-value=1.2e-05 Score=87.75 Aligned_cols=141 Identities=9% Similarity=-0.082 Sum_probs=84.4
Q ss_pred CCCccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHH
Q 006770 406 GDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNI 485 (632)
Q Consensus 406 ~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i 485 (632)
.++||+|+++|+.++.+.+..+. + ..++|+|+.+.- .+-.|+. +.
T Consensus 87 ~~kPd~vi~~g~~~~~~~~a~aa--~----~~gip~v~~i~P--~~waw~~---------------------------~~ 131 (385)
T TIGR00215 87 QAKPDLLVGIDAPDFNLTKELKK--K----DPGIKIIYYISP--QVWAWRK---------------------------WR 131 (385)
T ss_pred hcCCCEEEEeCCCCccHHHHHHH--h----hCCCCEEEEeCC--cHhhcCc---------------------------ch
Confidence 36899999999755443321121 1 358999865521 1101100 01
Q ss_pred HHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCch
Q 006770 486 FAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKP 565 (632)
Q Consensus 486 ~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~ 565 (632)
-+...+.+|+|+++++...+.+.. . ..+...+.|.+-.......
T Consensus 132 ~r~l~~~~d~v~~~~~~e~~~~~~--~-----------g~~~~~vGnPv~~~~~~~~----------------------- 175 (385)
T TIGR00215 132 AKKIEKATDFLLAILPFEKAFYQK--K-----------NVPCRFVGHPLLDAIPLYK----------------------- 175 (385)
T ss_pred HHHHHHHHhHhhccCCCcHHHHHh--c-----------CCCEEEECCchhhhccccC-----------------------
Confidence 234446899999999987655542 1 1345566676632211000
Q ss_pred HHHHHHHHHhCCCCCCCCcEEEEEc--CCcc-ccCHHHHHHHHhhccC--CCcEEEEEe
Q 006770 566 QCKAALQREFGLPVRDDVPVIGFIG--RLDH-QKGVDLIAEAIPWMMG--QDVQLSHVG 619 (632)
Q Consensus 566 ~~k~~Lrk~lGL~~~~d~pvIlfVG--RL~~-qKGvdlLLeA~~~L~~--~dvqLVI~G 619 (632)
..+...++++|++ ++.++|++.| |..+ .|++..+++|++.+.+ .++++++.+
T Consensus 176 ~~~~~~r~~lgl~--~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~ 232 (385)
T TIGR00215 176 PDRKSAREKLGID--HNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPV 232 (385)
T ss_pred CCHHHHHHHcCCC--CCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 0123457788986 3677777653 8887 8999999999998865 378887654
No 94
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.99 E-value=8.3e-05 Score=79.40 Aligned_cols=135 Identities=15% Similarity=0.051 Sum_probs=77.4
Q ss_pred Cc-cEEEEcCcch-h-HH-HHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhH
Q 006770 408 GN-LVFIANDWHT-A-LL-PVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHF 483 (632)
Q Consensus 408 ~p-DIIHaHdw~s-a-ll-p~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~ 483 (632)
++ |+||+|.... + .+ ..++... + ..++|+|+++|+..+. ... .. . ...
T Consensus 63 ~~~Dvv~~~~P~~~~~~~~~~~~~~~-k----~~~~k~i~~ihD~~~~-~~~-------~~--~-------------~~~ 114 (333)
T PRK09814 63 KPGDIVIFQFPTWNGFEFDRLFVDKL-K----KKQVKIIILIHDIEPL-RFD-------SN--Y-------------YLM 114 (333)
T ss_pred CCCCEEEEECCCCchHHHHHHHHHHH-H----HcCCEEEEEECCcHHH-hcc-------cc--c-------------hhh
Confidence 44 9999986321 1 11 2222221 1 1379999999996321 100 00 0 012
Q ss_pred HHHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCC
Q 006770 484 NIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTG 563 (632)
Q Consensus 484 ~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~ 563 (632)
.+++..++.||.||++|+.+++.+.+ .| + +..++.+++|..+.....+
T Consensus 115 ~~~~~~~~~aD~iI~~S~~~~~~l~~--~g--~------~~~~i~~~~~~~~~~~~~~---------------------- 162 (333)
T PRK09814 115 KEEIDMLNLADVLIVHSKKMKDRLVE--EG--L------TTDKIIVQGIFDYLNDIEL---------------------- 162 (333)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHHH--cC--C------CcCceEecccccccccccc----------------------
Confidence 45677889999999999999988875 23 2 3456666554432211000
Q ss_pred chHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccCCCcEEEEEecChh
Q 006770 564 KPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQT 623 (632)
Q Consensus 564 K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~~dvqLVI~G~G~~ 623 (632)
+. . ....+.|+|+|||....++. + ...+++|+|+|+|+.
T Consensus 163 --------~~---~--~~~~~~i~yaG~l~k~~~l~---~-----~~~~~~l~i~G~g~~ 201 (333)
T PRK09814 163 --------VK---T--PSFQKKINFAGNLEKSPFLK---N-----WSQGIKLTVFGPNPE 201 (333)
T ss_pred --------cc---c--ccCCceEEEecChhhchHHH---h-----cCCCCeEEEECCCcc
Confidence 00 0 01356899999998433211 1 224789999999974
No 95
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.96 E-value=0.0017 Score=70.31 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=28.1
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~ 322 (632)
||.++++.. .+||==.-..+++++|.++||+|.+++..++
T Consensus 1 ~~~i~~~~G-----GTGGHi~Pala~a~~l~~~g~~v~~vg~~~~ 40 (352)
T PRK12446 1 MKKIVFTGG-----GSAGHVTPNLAIIPYLKEDNWDISYIGSHQG 40 (352)
T ss_pred CCeEEEEcC-----CcHHHHHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 555555532 4555445567889999999999999985544
No 96
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.85 E-value=0.00014 Score=85.54 Aligned_cols=212 Identities=18% Similarity=0.179 Sum_probs=126.4
Q ss_pred CccEEEEcCcchhHHHH-HHHHHhhhcCC-------CCCCeEEEEEeCCcccC--CCCCCccccCCCCcccc--------
Q 006770 408 GNLVFIANDWHTALLPV-YLKAYYRDNGL-------MQYTRSLLVIHNIAHQG--RGPVSDFVYTDLPGHYL-------- 469 (632)
Q Consensus 408 ~pDIIHaHdw~sallp~-~l~~~~~~~~~-------~~~iPvV~TIHn~~~qg--~~p~~~l~~~glp~~~~-------- 469 (632)
++.+||.||-|.+++.+ +++......++ ....-+++|-|+....+ .||.+.+..+ +|..+.
T Consensus 300 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~w~~Aw~i~~~~~~yTnHT~lpealE~wp~~l~~~~-lpr~~~II~~In~~ 378 (797)
T cd04300 300 DKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFERL-LPRHLEIIYEINRR 378 (797)
T ss_pred CceEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeeecCCCchHHhCccCHHHHHHH-ChHHHHHHHHHHHH
Confidence 68899999999877544 34433321111 22346899999975443 4665544211 111110
Q ss_pred ----------------ccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCC
Q 006770 470 ----------------DLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNG 533 (632)
Q Consensus 470 ----------------~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNG 533 (632)
..+.......+..++|...++..+..|..||.-+.+.+++..+ ..+...-+.|+.-|.||
T Consensus 379 ~~~~~~~~~~~~~~~~~~l~ii~~~~~~~v~Ma~LAi~~S~~vNGVS~lH~ei~k~~~~----~df~~l~P~kf~n~TNG 454 (797)
T cd04300 379 FLEEVRAKYPGDEDRIRRMSIIEEGGEKQVRMAHLAIVGSHSVNGVAALHSELLKETVF----KDFYELYPEKFNNKTNG 454 (797)
T ss_pred HHHHHHHhcCCCHHHHHhhcccccCCCCEEehHHHHHhcCcchhhhHHHHHHHHHHhhH----HHHHhhCCCccCCcCCC
Confidence 0011111111234778888899999999999988866665311 01111246788899999
Q ss_pred CcCCCCC----Ccccc----ccccC---------CCcccc-c----ccccCCchHHHHHH----HHHhCCCCCCCCcEEE
Q 006770 534 IDTKEWS----PMYDI----HLTSD---------GYTNYC-L----DTLHTGKPQCKAAL----QREFGLPVRDDVPVIG 587 (632)
Q Consensus 534 ID~~~F~----P~~~~----~l~~~---------~~~~~s-~----ed~~~~K~~~k~~L----rk~lGL~~~~d~pvIl 587 (632)
|..-.|- |.... .+..+ ....|. . ++++.-|..+|..| +++.|+..+++...++
T Consensus 455 Vt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~~K~~nK~~L~~~i~~~~g~~ldp~slfdv 534 (797)
T cd04300 455 ITPRRWLLQANPGLSALITETIGDDWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVEVDPDSLFDV 534 (797)
T ss_pred CCcchhhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccEEE
Confidence 9998884 32111 11100 000111 1 22444455555554 4577888888999999
Q ss_pred EEcCCccccCHHH-HHHHHhhc---cC------CCcEEEEEecChhh
Q 006770 588 FIGRLDHQKGVDL-IAEAIPWM---MG------QDVQLSHVGHWQTR 624 (632)
Q Consensus 588 fVGRL~~qKGvdl-LLeA~~~L---~~------~dvqLVI~G~G~~~ 624 (632)
++-|+..+|...+ ++..+.++ .. .++++|++|...+.
T Consensus 535 q~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~ 581 (797)
T cd04300 535 QVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPG 581 (797)
T ss_pred EeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCC
Confidence 9999999999999 66665544 32 25899999987553
No 97
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=97.83 E-value=0.00017 Score=86.64 Aligned_cols=154 Identities=21% Similarity=0.241 Sum_probs=98.6
Q ss_pred CccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHH
Q 006770 408 GNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFA 487 (632)
Q Consensus 408 ~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r 487 (632)
.-|+|-+||+|-.++|.+++.. ....++-+.+|-. ||...+.. -+|. .-.++
T Consensus 231 ~gD~VWVHDYHL~LlP~~LR~~------~p~~~IGfFlHiP-----FPs~Eifr-~LP~---------------r~elL- 282 (934)
T PLN03064 231 EGDVVWCHDYHLMFLPKCLKEY------NSNMKVGWFLHTP-----FPSSEIHR-TLPS---------------RSELL- 282 (934)
T ss_pred CCCEEEEecchhhHHHHHHHHh------CCCCcEEEEecCC-----CCChHHHh-hCCc---------------HHHHH-
Confidence 3489999999999999998764 3567899999984 45432110 1111 11222
Q ss_pred HHhhcCCeEEEechhHHHHHHHhhc-CCcccc---cccc--CCCcEEEeeCCCcCCCCCCccccccccCCCccccccccc
Q 006770 488 AGLKTADRVVTVSRGYSWELKTAEG-GWGLHN---IINE--VDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLH 561 (632)
Q Consensus 488 ~~l~~AD~VItVS~~~a~el~~~~~-G~gL~~---il~~--~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~ 561 (632)
.++-.||.|-.=+..|++....... =.|+.. .+.. ..-++.++|-|||.+.|...... .
T Consensus 283 ~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~------------~--- 347 (934)
T PLN03064 283 RSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALET------------P--- 347 (934)
T ss_pred HHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcC------------h---
Confidence 4666899999888888877654210 001110 0111 12246678999999888653210 0
Q ss_pred CCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC
Q 006770 562 TGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG 610 (632)
Q Consensus 562 ~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~ 610 (632)
.-......++++++ ++.+|+.++||++.||+...++|+..+++
T Consensus 348 -~v~~~~~~lr~~~~-----g~kiIlgVDRLD~~KGI~~kL~AfE~fL~ 390 (934)
T PLN03064 348 -QVQQHIKELKERFA-----GRKVMLGVDRLDMIKGIPQKILAFEKFLE 390 (934)
T ss_pred -hHHHHHHHHHHHhC-----CceEEEEeeccccccCHHHHHHHHHHHHH
Confidence 00112345677765 46799999999999999999999999775
No 98
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=97.79 E-value=7.6e-05 Score=86.81 Aligned_cols=326 Identities=21% Similarity=0.191 Sum_probs=180.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCC-C-CCCCcccc------------------------eeeeecC--
Q 006770 289 PWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY-A-EPQDTGIR------------------------KRYRVDR-- 340 (632)
Q Consensus 289 P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~-~-~~~dig~r------------------------~~~~i~g-- 340 (632)
|-. .||+|+.+....++++..|...+.+...|... . +....|+. ...++.|
T Consensus 111 p~l-gGGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~~~a~~~d~~V~g~~ 189 (750)
T COG0058 111 PGL-GGGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDAEGVPYDVPVPGYD 189 (750)
T ss_pred ccc-cccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCCcceeecccCCceeeeeEEecc
Confidence 543 49999999999999999999999988765431 1 11000111 0111222
Q ss_pred -ccceEEEEEEEECCeEEEEecCccc------cccCCCCCCCC-hhhHHHHHHHHHHHHHHhhhhc-CCCCCCCCCCccE
Q 006770 341 -QDIEVAYFQAYIDGVDFVFLDSPLF------RHLGNNIYGGG-REDILKRMVLFCKAAIEIPWYV-PCGGVCYGDGNLV 411 (632)
Q Consensus 341 -~~~~v~v~~~~~dGV~v~~I~~p~~------~~~~~~iY~~~-~~d~~~r~~lf~kav~e~i~~l-~~~~~~~~~~pDI 411 (632)
....+++|......+++++.+...- ......+|+.+ ....+.+-.+++.+.++.+... ... ....++..
T Consensus 190 ~~~~~lrlW~a~~~~~~~~l~~~n~~e~~~~~~~iT~~LYp~Ds~elRl~Qeyfl~~agvq~I~~~~~~~--~~~~~~~~ 267 (750)
T COG0058 190 NRVVTLRLWQAQVGRVPLYLLDFNVGENKNDARNITRVLYPGDSKELRLKQEYFLGSAGVQDILARGHLE--HHDLDVLA 267 (750)
T ss_pred CcEEEEEEEEEecCccceEeecCCCcccchhhhhHHhhcCCCCcHHHHHhhhheeeeHHHHHHHHHhhhc--cccccchh
Confidence 3344566777776778877754221 11234578765 2223455556676766666543 100 00145667
Q ss_pred EEEcCcchhHHHH-HHHHHhhhcCC-------CCCCeEEEEEeCCcccC--CCCCCccccCCCCccc----------ccc
Q 006770 412 FIANDWHTALLPV-YLKAYYRDNGL-------MQYTRSLLVIHNIAHQG--RGPVSDFVYTDLPGHY----------LDL 471 (632)
Q Consensus 412 IHaHdw~sallp~-~l~~~~~~~~~-------~~~iPvV~TIHn~~~qg--~~p~~~l~~~glp~~~----------~~~ 471 (632)
.|.||-|.+++.+ +++.....++. ....-+++|.|+....| .||.+.+..+ +|.++ ...
T Consensus 268 ~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~-lpr~~~ii~~in~~~l~~ 346 (750)
T COG0058 268 DHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKL-LPRHLQIIYEINARFLPE 346 (750)
T ss_pred hhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHH-hhhhhhhHHHHHhhhhHH
Confidence 7899988877644 33423222221 12345889999976554 4665543211 11000 000
Q ss_pred ccccCCC----Cch---hHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccc
Q 006770 472 FKLYDPV----GGE---HFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYD 544 (632)
Q Consensus 472 l~~~~p~----~g~---~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~ 544 (632)
.+...+- .+. .++|.-.++..|..|..||.-+.+.+++..... ..++ .+.|+.-|.|||....|--...
T Consensus 347 ~~~~~~~~~~~~~~~i~~v~Ma~lal~~S~~vNGVsklH~el~k~~~~~~-~~~~---~p~~i~nvTNGIt~rrWl~~~n 422 (750)
T COG0058 347 VRLLYLGDLIRRGSPIEEVNMAVLALVGSHSVNGVSKLHSELSKKMWFAD-FHGL---YPEKINNVTNGITPRRWLAPAN 422 (750)
T ss_pred HHhhccccccccCCcccceehhhhhhhhhhhhHhHHHHHHHHHHHHHHHH-hccc---CccccccccCCcCCchhhhhhh
Confidence 0111100 000 156666788889999999998887775532210 1111 4788999999999988842211
Q ss_pred cccccCCCc-----ccc------------------cccccCCchHHHHHH----HHHhCCCCCCCCcEEEEEcCCccccC
Q 006770 545 IHLTSDGYT-----NYC------------------LDTLHTGKPQCKAAL----QREFGLPVRDDVPVIGFIGRLDHQKG 597 (632)
Q Consensus 545 ~~l~~~~~~-----~~s------------------~ed~~~~K~~~k~~L----rk~lGL~~~~d~pvIlfVGRL~~qKG 597 (632)
+.|. +-|. .|. .+.+..-|..+|..| ..+.|+..+++...++|+-|+.++|.
T Consensus 423 ~~L~-~~~~~~ig~~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~~~p~~lfd~~~kRiheYKR 501 (750)
T COG0058 423 PGLA-DLLDEKIGDEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNALFDGQARRIHEYKR 501 (750)
T ss_pred HHHH-HHHhhhhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCCCcceeeeehhhhhhhh
Confidence 1110 0000 000 000111222333322 23467777889999999999999999
Q ss_pred HHHHHHHHhhccC-------CCcEEEEEecChh
Q 006770 598 VDLIAEAIPWMMG-------QDVQLSHVGHWQT 623 (632)
Q Consensus 598 vdlLLeA~~~L~~-------~dvqLVI~G~G~~ 623 (632)
..+.+.-+..+.. ..+++|++|...+
T Consensus 502 q~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP 534 (750)
T COG0058 502 QLLNLLDIERLYRILKEDWVPRVQIIFAGKAHP 534 (750)
T ss_pred hHHhHhhHHHHHHHHhcCCCCceEEEEeccCCC
Confidence 9877655554432 2588899998654
No 99
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=97.63 E-value=0.00024 Score=83.33 Aligned_cols=212 Identities=18% Similarity=0.177 Sum_probs=125.4
Q ss_pred CccEEEEcCcchhHHHH-HHHHHhhhcCC-------CCCCeEEEEEeCCcccC--CCCCCccccCCCCcc----------
Q 006770 408 GNLVFIANDWHTALLPV-YLKAYYRDNGL-------MQYTRSLLVIHNIAHQG--RGPVSDFVYTDLPGH---------- 467 (632)
Q Consensus 408 ~pDIIHaHdw~sallp~-~l~~~~~~~~~-------~~~iPvV~TIHn~~~qg--~~p~~~l~~~glp~~---------- 467 (632)
++.+||.||-|.+++.+ +++......++ ....-+++|-|+....+ .||.+.+..+ +|..
T Consensus 297 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~wp~~l~~~~-Lpr~~~iI~~In~~ 375 (794)
T TIGR02093 297 KKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFQKL-LPRHLEIIYEINRR 375 (794)
T ss_pred cceEEEecCCchHHHHHHHHHHHHHhcCCCHHHHHHHHHhheecccCCCChHHhCCcCHHHHHHH-HhHHHHHHHHHhHH
Confidence 68899999999877644 44433322121 22345899999975443 4665544211 1111
Q ss_pred ccccccccCC--------------CCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCC
Q 006770 468 YLDLFKLYDP--------------VGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNG 533 (632)
Q Consensus 468 ~~~~l~~~~p--------------~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNG 533 (632)
+....+...| ..+..++|...++..+..|..||.-+.+.+++..+. .... .-++++.-|.||
T Consensus 376 fl~~~~~~~p~d~~~~~~~sii~~~~~~~v~Ma~LAi~~S~~vNGVS~lH~eilk~~~~~-df~~---l~P~kf~n~TNG 451 (794)
T TIGR02093 376 FLAELAAKGPGDEAKIRRMSIIEEGQSKRVRMANLAIVGSHSVNGVAALHTELLKEDLLK-DFYE---LYPEKFNNKTNG 451 (794)
T ss_pred HHHHHHHhCCCcHHHHhheeeeecCCCCEEehHHHHHHhhhhhhhhHHHHHHHHHHHHHH-HHHh---hCCCccCCcCCC
Confidence 1110000111 112357888888899999999999888666642110 0011 146788899999
Q ss_pred CcCCCCC----Ccccc----ccccC---------CCccccc-----ccccCCchHHHHHH----HHHhCCCCCCCCcEEE
Q 006770 534 IDTKEWS----PMYDI----HLTSD---------GYTNYCL-----DTLHTGKPQCKAAL----QREFGLPVRDDVPVIG 587 (632)
Q Consensus 534 ID~~~F~----P~~~~----~l~~~---------~~~~~s~-----ed~~~~K~~~k~~L----rk~lGL~~~~d~pvIl 587 (632)
|..-.|- |.... .+..+ ....+.. ++++.-|...|..| +++.|+..+++...++
T Consensus 452 Vt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~vK~~nK~~L~~~i~~~~g~~ldp~slfdv 531 (794)
T TIGR02093 452 ITPRRWLRLANPGLSALLTETIGDDWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEVDPNSIFDV 531 (794)
T ss_pred CCccchhhhcCHHHHHHHHHhcCchhhhcHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccccchh
Confidence 9998884 32111 11100 0001111 23344444555554 4577888888999999
Q ss_pred EEcCCccccCHHH-HHHHHhhcc---CC------CcEEEEEecChhh
Q 006770 588 FIGRLDHQKGVDL-IAEAIPWMM---GQ------DVQLSHVGHWQTR 624 (632)
Q Consensus 588 fVGRL~~qKGvdl-LLeA~~~L~---~~------dvqLVI~G~G~~~ 624 (632)
++-|+..+|...+ ++..+.++. .. ++++|++|...+.
T Consensus 532 q~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~ 578 (794)
T TIGR02093 532 QVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPG 578 (794)
T ss_pred hheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCC
Confidence 9999999999999 666655543 22 6799999987653
No 100
>PRK14986 glycogen phosphorylase; Provisional
Probab=97.58 E-value=0.00083 Score=79.21 Aligned_cols=212 Identities=15% Similarity=0.188 Sum_probs=124.0
Q ss_pred CccEEEEcCcchhHHHH-HHHHHhhhcCC-------CCCCeEEEEEeCCcccC--CCCCCccccCCCCcc----------
Q 006770 408 GNLVFIANDWHTALLPV-YLKAYYRDNGL-------MQYTRSLLVIHNIAHQG--RGPVSDFVYTDLPGH---------- 467 (632)
Q Consensus 408 ~pDIIHaHdw~sallp~-~l~~~~~~~~~-------~~~iPvV~TIHn~~~qg--~~p~~~l~~~glp~~---------- 467 (632)
.+-+||.||-|++++.+ +++......++ ....-+++|-|+....+ .||.+.+..+ +|..
T Consensus 313 ~~v~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnHT~lpealE~w~~~l~~~~-lpr~l~Ii~eIn~~ 391 (815)
T PRK14986 313 DKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKI-LPRHLQIIFEINDY 391 (815)
T ss_pred cccEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecccCChHHhCcCCHHHHHHH-ccHhhhHHHHHHHH
Confidence 45599999999877654 34433321111 22456899999975543 4665543221 1111
Q ss_pred ccccc--------------cccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCC
Q 006770 468 YLDLF--------------KLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNG 533 (632)
Q Consensus 468 ~~~~l--------------~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNG 533 (632)
+...+ ....+..+..++|...++..+..|..||.-+.+.+++..+. .... ..++|+.-|.||
T Consensus 392 fl~~~~~~~~~~~~~~~~~sii~~~~~~~v~Ma~LAl~~S~~vNGVS~lH~evl~~~~f~-df~~---l~P~kf~niTNG 467 (815)
T PRK14986 392 FLKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLFA-DFAK---IFPGRFCNVTNG 467 (815)
T ss_pred HHHHHHHhCCCcHHHHhhhhccccCCCCEEeeHHHHhhccchhhHHHHHHHHHHHHHHHH-HHHh---hCCCcccccCCC
Confidence 11100 00111112346777788889999999999877555332110 0011 146678889999
Q ss_pred CcCCCCC----Ccccc----ccccC---------CCcccc-c----ccccCCchHHHHHH----HHHhCCCCCCCCcEEE
Q 006770 534 IDTKEWS----PMYDI----HLTSD---------GYTNYC-L----DTLHTGKPQCKAAL----QREFGLPVRDDVPVIG 587 (632)
Q Consensus 534 ID~~~F~----P~~~~----~l~~~---------~~~~~s-~----ed~~~~K~~~k~~L----rk~lGL~~~~d~pvIl 587 (632)
|....|- |.... .+..+ ....+. . +++++-|...|..| +++.|+..+++...++
T Consensus 468 V~~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~d~~f~~~l~~vk~~nK~~L~~~i~~~~g~~ldp~sLfd~ 547 (815)
T PRK14986 468 VTPRRWLALANPSLSAVLDEHIGRTWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVVNPKALFDV 547 (815)
T ss_pred CChhhHhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcccceee
Confidence 9998885 43211 11100 000010 1 22444444555554 4567888888999999
Q ss_pred EEcCCccccCHHH-HHHHHhhc---cC------CCcEEEEEecChhh
Q 006770 588 FIGRLDHQKGVDL-IAEAIPWM---MG------QDVQLSHVGHWQTR 624 (632)
Q Consensus 588 fVGRL~~qKGvdl-LLeA~~~L---~~------~dvqLVI~G~G~~~ 624 (632)
++-|+..+|...+ ++..+.++ .. .++++|++|...+.
T Consensus 548 qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~ 594 (815)
T PRK14986 548 QIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASA 594 (815)
T ss_pred eehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCC
Confidence 9999999999999 77775554 32 26999999987543
No 101
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=97.27 E-value=0.0016 Score=76.55 Aligned_cols=212 Identities=15% Similarity=0.092 Sum_probs=122.3
Q ss_pred CccEEEEcCcchhHHHH-HHHHHhhhcCC-------CCCCeEEEEEeCCcccC--CCCCCccccCCCCccc---------
Q 006770 408 GNLVFIANDWHTALLPV-YLKAYYRDNGL-------MQYTRSLLVIHNIAHQG--RGPVSDFVYTDLPGHY--------- 468 (632)
Q Consensus 408 ~pDIIHaHdw~sallp~-~l~~~~~~~~~-------~~~iPvV~TIHn~~~qg--~~p~~~l~~~glp~~~--------- 468 (632)
++.+||.||-|.+++.+ +++.....+++ ....-+++|-|+....+ .||.+.+..+ +|..+
T Consensus 302 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~w~~~l~~~~-Lpr~~~ii~~in~~ 380 (798)
T PRK14985 302 DYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKSL-LPRHMQIIKEINTR 380 (798)
T ss_pred CCcEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHheeeecCCCChhhhCCCCHHHHHHH-hHHHHHHHHHHHHH
Confidence 67899999999876544 44433322121 22446899999975443 4665543211 11110
Q ss_pred -cccccccCCCC-----------chhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcC
Q 006770 469 -LDLFKLYDPVG-----------GEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDT 536 (632)
Q Consensus 469 -~~~l~~~~p~~-----------g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~ 536 (632)
........|.. ...++|...++..+..|..||.-+.+.+.+..+ +.+-..-+.++.-|.|||..
T Consensus 381 fl~~~~~~~~~d~~~~~~~sii~~~~v~Ma~LAi~~S~~vNGVS~lH~eil~~~~f----~df~~l~p~kf~nvTNGVt~ 456 (798)
T PRK14985 381 FKTLVEKTWPGDKKVWAKLAVVHDKQVRMANLCVVSGFAVNGVAALHSDLVVKDLF----PEYHQLWPNKFHNVTNGITP 456 (798)
T ss_pred HHHHHHHhCCCcHHHhhhhhhccCCeeehHHHHHHhcchhHhhHHHHhchhHHhhh----hhhHhhCCCccCCcCCCcCc
Confidence 00000000110 113677777888899999999877654444211 00111146788899999999
Q ss_pred CCC----CCcccc----ccccC---------CCccccc-cc----ccCCchHHHHHH----HHHhCCCCCCCCcEEEEEc
Q 006770 537 KEW----SPMYDI----HLTSD---------GYTNYCL-DT----LHTGKPQCKAAL----QREFGLPVRDDVPVIGFIG 590 (632)
Q Consensus 537 ~~F----~P~~~~----~l~~~---------~~~~~s~-ed----~~~~K~~~k~~L----rk~lGL~~~~d~pvIlfVG 590 (632)
-.| +|.... .+..+ ....|.. ++ +++-|...|..| +++.|+..+++...++++-
T Consensus 457 rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~i~~~~g~~ldp~slfdvq~k 536 (798)
T PRK14985 457 RRWIKQCNPALAALLDKTLKKEWANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQAIFDVQIK 536 (798)
T ss_pred chhhhhhCHHHHHHHHHhcCcchhhChHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhcchhhHh
Confidence 999 453221 11100 0011111 11 233344444444 4667888888999999999
Q ss_pred CCccccCHHH-HHHHHhhcc---C------CCcEEEEEecChhh
Q 006770 591 RLDHQKGVDL-IAEAIPWMM---G------QDVQLSHVGHWQTR 624 (632)
Q Consensus 591 RL~~qKGvdl-LLeA~~~L~---~------~dvqLVI~G~G~~~ 624 (632)
|+..+|...+ ++..+.++. . .++++|++|...+.
T Consensus 537 R~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~ 580 (798)
T PRK14985 537 RLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPG 580 (798)
T ss_pred hhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCC
Confidence 9999999998 766655443 2 25899999987653
No 102
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.022 Score=61.10 Aligned_cols=265 Identities=10% Similarity=0.058 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEEEEecCccccccCC-CCCC
Q 006770 296 LGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGN-NIYG 374 (632)
Q Consensus 296 lg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v~~I~~p~~~~~~~-~iY~ 374 (632)
-.-.++.-|..|++.|++|.++.--... +.. .+ ..-+.++++-+..+.+..... -+|.
T Consensus 25 RSPRMqYHA~Sla~~gf~VdliGy~~s~-p~e-~l-------------------~~hprI~ih~m~~l~~~~~~p~~~~l 83 (444)
T KOG2941|consen 25 RSPRMQYHALSLAKLGFQVDLIGYVESI-PLE-EL-------------------LNHPRIRIHGMPNLPFLQGGPRVLFL 83 (444)
T ss_pred CChHHHHHHHHHHHcCCeEEEEEecCCC-ChH-HH-------------------hcCCceEEEeCCCCcccCCCchhhhh
Confidence 3456778899999999999999732221 100 01 012445555555544322111 1121
Q ss_pred CChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCC
Q 006770 375 GGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRG 454 (632)
Q Consensus 375 ~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~ 454 (632)
. ...+.++..+-++ ++. .+.+|+|-.++.++-..-..+.. +. ...+.+.|...||..|...
T Consensus 84 ~--lKvf~Qfl~Ll~a----L~~--------~~~~~~ilvQNPP~iPtliv~~~-~~---~l~~~KfiIDWHNy~Ysl~- 144 (444)
T KOG2941|consen 84 P--LKVFWQFLSLLWA----LFV--------LRPPDIILVQNPPSIPTLIVCVL-YS---ILTGAKFIIDWHNYGYSLQ- 144 (444)
T ss_pred H--HHHHHHHHHHHHH----HHh--------ccCCcEEEEeCCCCCchHHHHHH-HH---HHhcceEEEEehhhHHHHH-
Confidence 0 1112222222222 221 25799999998776332221211 11 1468999999999755200
Q ss_pred CCCccc-cCCCCccccccccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeC-
Q 006770 455 PVSDFV-YTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVN- 532 (632)
Q Consensus 455 p~~~l~-~~glp~~~~~~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpN- 532 (632)
+. ..|....+..+. ...++..-+.||.=.||++.+++++... ||+. +..+++.
T Consensus 145 ----l~~~~g~~h~lV~l~----------~~~E~~fgk~a~~nLcVT~AMr~dL~qn---Wgi~--------ra~v~YDr 199 (444)
T KOG2941|consen 145 ----LKLKLGFQHPLVRLV----------RWLEKYFGKLADYNLCVTKAMREDLIQN---WGIN--------RAKVLYDR 199 (444)
T ss_pred ----HHhhcCCCCchHHHH----------HHHHHHhhcccccchhhHHHHHHHHHHh---cCCc--------eeEEEecC
Confidence 00 011111111111 2234555578999999999999999864 5541 2233332
Q ss_pred ----CCcCCC----CCCccccccccCCCcccccccccCCchHHHHHHHHHhC---CCCCCCCc-EEEEEcCCccccCHHH
Q 006770 533 ----GIDTKE----WSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFG---LPVRDDVP-VIGFIGRLDHQKGVDL 600 (632)
Q Consensus 533 ----GID~~~----F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lG---L~~~~d~p-vIlfVGRL~~qKGvdl 600 (632)
+.+.+. |.+... .+-.|... ..+++...+.++.+++. ..-.+..| +++..--+++...+.+
T Consensus 200 Pps~~~~l~~~H~lf~~l~~------d~~~f~ar-~~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~I 272 (444)
T KOG2941|consen 200 PPSKPTPLDEQHELFMKLAG------DHSPFRAR-EPQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGI 272 (444)
T ss_pred CCCCCCchhHHHHHHhhhcc------ccchhhhc-ccccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHH
Confidence 111111 222110 01111111 12345555556666554 11112333 5666777899999999
Q ss_pred HHHHHhhc-----cC----CCcEEEEEecCh--hhHHHHHHhC
Q 006770 601 IAEAIPWM-----MG----QDVQLSHVGHWQ--TRFGRDAEEL 632 (632)
Q Consensus 601 LLeA~~~L-----~~----~dvqLVI~G~G~--~~le~~lkel 632 (632)
|++|+... .+ ..+-++|-|.|| +.|.++++++
T Consensus 273 LL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~ 315 (444)
T KOG2941|consen 273 LLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEK 315 (444)
T ss_pred HHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHHHh
Confidence 99999832 22 267788899998 6888888764
No 103
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=97.07 E-value=0.0052 Score=60.27 Aligned_cols=40 Identities=28% Similarity=0.305 Sum_probs=28.8
Q ss_pred HHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCC
Q 006770 488 AGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEW 539 (632)
Q Consensus 488 ~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F 539 (632)
..+..||..++++..-+...=. . -..||.||+-|||++.+
T Consensus 131 ~~l~~~D~~isPT~wQ~~~fP~---------~---~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 131 LALEQADAGISPTRWQRSQFPA---------E---FRSKISVIHDGIDTDRF 170 (171)
T ss_pred HHHHhCCcCcCCCHHHHHhCCH---------H---HHcCcEEeecccchhhc
Confidence 4667899999999765532211 0 24699999999999765
No 104
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.06 E-value=0.0014 Score=62.14 Aligned_cols=52 Identities=37% Similarity=0.606 Sum_probs=43.8
Q ss_pred HHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhcc---CCCcEEEEEecCh
Q 006770 569 AALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMM---GQDVQLSHVGHWQ 622 (632)
Q Consensus 569 ~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~---~~dvqLVI~G~G~ 622 (632)
..++..++.+ ++.++|+|+||+.+.||++.+++|+..+. ..+++|+|+|+++
T Consensus 3 ~~~~~~~~~~--~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~ 57 (172)
T PF00534_consen 3 DKLREKLKIP--DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE 57 (172)
T ss_dssp HHHHHHTTT---TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCC
T ss_pred HHHHHHcCCC--CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccc
Confidence 4466777765 47889999999999999999999999986 3689999999765
No 105
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=96.88 E-value=0.0063 Score=68.10 Aligned_cols=184 Identities=16% Similarity=0.153 Sum_probs=87.1
Q ss_pred cEEEEEeccc-------CCCCCCCcHHHHHHHHHHHHHHC--------CC----eEEEEccCCCCCCCCCCcccceeeee
Q 006770 278 MNVILVAAEC-------GPWSKTGGLGDVAGALPKALARR--------GH----RVMVVAPHYGNYAEPQDTGIRKRYRV 338 (632)
Q Consensus 278 MKIL~It~e~-------~P~~~~GGlg~~v~~LakaLakr--------Gh----eV~VVtP~y~~~~~~~dig~r~~~~i 338 (632)
.+|++++.+= ...+.+||--+|+.++++||.+. |. +|.|+|.--+..... .-+.+. -++
T Consensus 273 f~vvliSpHG~f~q~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t-~~~q~l-e~~ 350 (550)
T PF00862_consen 273 FNVVLISPHGYFGQENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGT-TCNQRL-EKV 350 (550)
T ss_dssp SEEEEE--SS--STTSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCG-GGTSSE-EEE
T ss_pred EEEEEEcCccccccccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCC-Cccccc-ccc
Confidence 4888888761 12247999999999999999763 43 488887543321100 000010 011
Q ss_pred cCccceEEEEEEEECCeEEEEecCccccc-cCC-----CCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEE
Q 006770 339 DRQDIEVAYFQAYIDGVDFVFLDSPLFRH-LGN-----NIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVF 412 (632)
Q Consensus 339 ~g~~~~v~v~~~~~dGV~v~~I~~p~~~~-~~~-----~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDII 412 (632)
.| ..+..+++|+...-.. .++ .+|. .+.+|+ ..+..++...+ +..||+|
T Consensus 351 ~g-----------t~~a~IlRvPF~~~~gi~~kwisrf~lWP-----yLe~fa--~d~~~~i~~e~-------~~~PdlI 405 (550)
T PF00862_consen 351 SG-----------TENARILRVPFGPEKGILRKWISRFDLWP-----YLEEFA--DDAEREILAEL-------QGKPDLI 405 (550)
T ss_dssp TT-----------ESSEEEEEE-ESESTEEE-S---GGG-GG-----GHHHHH--HHHHHHHHHHH-------TS--SEE
T ss_pred CC-----------CCCcEEEEecCCCCcchhhhccchhhchh-----hHHHHH--HHHHHHHHHHh-------CCCCcEE
Confidence 12 2345555554221100 001 1222 123332 12222333333 2479999
Q ss_pred EEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccc-cccccCCCCchhHHHHHHHhh
Q 006770 413 IANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLD-LFKLYDPVGGEHFNIFAAGLK 491 (632)
Q Consensus 413 HaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~-~l~~~~p~~g~~~~i~r~~l~ 491 (632)
|.|.--+++++.++... .++|.++|-|.+.-+ .+...++.++-++ .+++- ..+.....+++
T Consensus 406 ~GnYsDgnlvA~LLs~~-------lgv~~~~iaHsLek~------Ky~~s~~~w~e~e~~Yhfs-----~qftAd~iamn 467 (550)
T PF00862_consen 406 IGNYSDGNLVASLLSRK-------LGVTQCFIAHSLEKT------KYEDSDLYWKEIEEKYHFS-----CQFTADLIAMN 467 (550)
T ss_dssp EEEHHHHHHHHHHHHHH-------HT-EEEEE-SS-HHH------HHHTTTTTSHHHHHHH-HH-----HHHHHHHHHHH
T ss_pred EeccCcchHHHHHHHhh-------cCCceehhhhccccc------cccccCCCHHHHHhhccch-----hhhhHHHHHhh
Confidence 99976678888777653 489999999997421 0111122111110 01111 12344557889
Q ss_pred cCCeEEEechhHHHHHHH
Q 006770 492 TADRVVTVSRGYSWELKT 509 (632)
Q Consensus 492 ~AD~VItVS~~~a~el~~ 509 (632)
+||.|||-+ .+|+..
T Consensus 468 ~adfIItST---~QEI~g 482 (550)
T PF00862_consen 468 AADFIITST---YQEIAG 482 (550)
T ss_dssp HSSEEEESS---HHHHHB
T ss_pred cCCEEEEcc---hHhhcC
Confidence 999999854 445553
No 106
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=96.83 E-value=0.02 Score=64.54 Aligned_cols=163 Identities=16% Similarity=0.120 Sum_probs=103.4
Q ss_pred CccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHH
Q 006770 408 GNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFA 487 (632)
Q Consensus 408 ~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r 487 (632)
.-|+|-+||+|-.++|.+++.. ....++-+.+|-. ||...+. .-+|. .-.++
T Consensus 123 ~~D~VWVHDYhL~llp~~LR~~------~~~~~IgFFlHiP-----FPs~eif-r~LP~---------------r~eil- 174 (474)
T PRK10117 123 DDDIIWIHDYHLLPFASELRKR------GVNNRIGFFLHIP-----FPTPEIF-NALPP---------------HDELL- 174 (474)
T ss_pred CCCEEEEeccHhhHHHHHHHHh------CCCCcEEEEEeCC-----CCChHHH-hhCCC---------------hHHHH-
Confidence 3489999999999999998764 2467899999984 4543211 01221 11222
Q ss_pred HHhhcCCeEEEechhHHHHHHHhh---cCCcc-c-cccc--cCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccc
Q 006770 488 AGLKTADRVVTVSRGYSWELKTAE---GGWGL-H-NIIN--EVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTL 560 (632)
Q Consensus 488 ~~l~~AD~VItVS~~~a~el~~~~---~G~gL-~-~il~--~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~ 560 (632)
.++-.||.|-.=+..+++...+.. .|... . ..+. ...-++.+.|=|||.+.|.-....
T Consensus 175 ~glL~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~--------------- 239 (474)
T PRK10117 175 EQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAG--------------- 239 (474)
T ss_pred HHHHhCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhc---------------
Confidence 456678888888888887665421 11100 0 0110 122346778889998776432110
Q ss_pred cCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccCC------CcEEEEEec
Q 006770 561 HTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQ------DVQLSHVGH 620 (632)
Q Consensus 561 ~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~~------dvqLVI~G~ 620 (632)
........++++++ ++.+|+-+.||+.-||+..=++|+..+++. ++.|+-+..
T Consensus 240 --~~~~~~~~lr~~~~-----~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~ 298 (474)
T PRK10117 240 --PLPPKLAQLKAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAP 298 (474)
T ss_pred --hHHHHHHHHHHHcC-----CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcC
Confidence 00112344666665 467999999999999999999999998852 788887765
No 107
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.00052 Score=74.96 Aligned_cols=162 Identities=20% Similarity=0.271 Sum_probs=91.5
Q ss_pred ccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCC--CCCC-cc----ccCCCCccccccccccCCCCch
Q 006770 409 NLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGR--GPVS-DF----VYTDLPGHYLDLFKLYDPVGGE 481 (632)
Q Consensus 409 pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~--~p~~-~l----~~~glp~~~~~~l~~~~p~~g~ 481 (632)
.-|.|.|+|.++....+.+.. ...+-.|+|.|..- -|+ |.-. ++ ...++..+- ...+.| +
T Consensus 175 ~vVahFHEW~AGVgL~l~R~r------rl~iaTifTTHATL-LGRyLCA~~~DfYNnLd~f~vD~EA-Gkr~IY-----H 241 (692)
T KOG3742|consen 175 AVVAHFHEWQAGVGLILCRAR------RLDIATIFTTHATL-LGRYLCAGNVDFYNNLDSFDVDKEA-GKRQIY-----H 241 (692)
T ss_pred HHHHHHHHHHhccchheehhc------ccceEEEeehhHHH-HHHHHhcccchhhhchhhcccchhh-ccchhH-----H
Confidence 345699999987554433321 24677889999742 222 1111 00 001111100 001122 3
Q ss_pred hHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCccccccccc
Q 006770 482 HFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLH 561 (632)
Q Consensus 482 ~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~ 561 (632)
.+.+++++...|+..+|||+-.+-+... +++ .++-.+.|||.+...|.... .| .++
T Consensus 242 rYC~ERaa~h~AhVFTTVSeITa~EAeH---------lLk--RKPD~itPNGLNV~KFsA~H----------EF--QNL- 297 (692)
T KOG3742|consen 242 RYCLERAAAHTAHVFTTVSEITALEAEH---------LLK--RKPDVITPNGLNVKKFSAVH----------EF--QNL- 297 (692)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHH---------HHh--cCCCeeCCCCcceeehhHHH----------HH--HHH-
Confidence 4678999999999999999977655443 122 33445679999999886431 11 112
Q ss_pred CCchHHHHHHHHH-----hC-CCCC-CCCcEEEEEcCCc-cccCHHHHHHHHhhcc
Q 006770 562 TGKPQCKAALQRE-----FG-LPVR-DDVPVIGFIGRLD-HQKGVDLIAEAIPWMM 609 (632)
Q Consensus 562 ~~K~~~k~~Lrk~-----lG-L~~~-~d~pvIlfVGRL~-~qKGvdlLLeA~~~L~ 609 (632)
..+.|+.+.+- +| +.-+ ++..++..+||.. ..||-|.+||++++|.
T Consensus 298 --HA~~KekIndFVRGHF~GhlDFdLdkTlyfFiAGRYEf~NKGaDmFiEsLaRLN 351 (692)
T KOG3742|consen 298 --HAQKKEKINDFVRGHFHGHLDFDLDKTLYFFIAGRYEFSNKGADMFIESLARLN 351 (692)
T ss_pred --HHHHHHHHHHHhhhhccccccccccceEEEEEeeeeeeccCchHHHHHHHHHhH
Confidence 12333333221 12 1111 2445667789998 5899999999999874
No 108
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=96.62 E-value=0.053 Score=61.19 Aligned_cols=165 Identities=22% Similarity=0.244 Sum_probs=104.6
Q ss_pred CccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHH
Q 006770 408 GNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFA 487 (632)
Q Consensus 408 ~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r 487 (632)
.-|+|-+||+|-.++|.+++.. ....++.+.+|-. ||...+.. -+|. .-.++
T Consensus 147 ~gDiIWVhDYhL~L~P~mlR~~------~~~~~IgfFlHiP-----fPssEvfr-~lP~---------------r~eIl- 198 (486)
T COG0380 147 PGDIIWVHDYHLLLVPQMLRER------IPDAKIGFFLHIP-----FPSSEVFR-CLPW---------------REEIL- 198 (486)
T ss_pred CCCEEEEEechhhhhHHHHHHh------CCCceEEEEEeCC-----CCCHHHHh-hCch---------------HHHHH-
Confidence 4499999999999999998764 3466899999984 45432210 0111 11232
Q ss_pred HHhhcCCeEEEechhHHHHHHHh---hcC-Cccccc-cc---cCCCcEEEeeCCCcCCCCCCccccccccCCCccccccc
Q 006770 488 AGLKTADRVVTVSRGYSWELKTA---EGG-WGLHNI-IN---EVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDT 559 (632)
Q Consensus 488 ~~l~~AD~VItVS~~~a~el~~~---~~G-~gL~~i-l~---~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed 559 (632)
.++-.||.|-.=++.+++..... ..| .+..++ .+ ....++..+|=|||...|.-...
T Consensus 199 ~gll~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~--------------- 263 (486)
T COG0380 199 EGLLGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALK--------------- 263 (486)
T ss_pred HHhhcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhc---------------
Confidence 35667888888888888765432 111 000100 01 12245677888999877643211
Q ss_pred ccCCch--HHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC------CCcEEEEEecCh
Q 006770 560 LHTGKP--QCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG------QDVQLSHVGHWQ 622 (632)
Q Consensus 560 ~~~~K~--~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~------~dvqLVI~G~G~ 622 (632)
++. ....++++.++- ++.+|+.+-||+.-||+..=+.|+.+++. ..+.|+-++...
T Consensus 264 ---~~~v~~~~~el~~~~~~----~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pS 327 (486)
T COG0380 264 ---SPSVQEKVLELKAELGR----NKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPS 327 (486)
T ss_pred ---CCchhhHHHHHHHHhcC----CceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCC
Confidence 011 112345555552 47899999999999999999999999984 278888888653
No 109
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.56 E-value=0.028 Score=67.83 Aligned_cols=165 Identities=17% Similarity=0.197 Sum_probs=105.0
Q ss_pred ccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHHH
Q 006770 409 NLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAA 488 (632)
Q Consensus 409 pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r~ 488 (632)
-|+|-+||+|-.++|.+++.. ....++-+.+|-. ||...+. .-+|. ..-+-.
T Consensus 202 ~d~VWVhDYhL~llP~~LR~~------~~~~~IgfFlHiP-----FPs~eif-r~LP~----------------r~eiL~ 253 (854)
T PLN02205 202 DDFVWIHDYHLMVLPTFLRKR------FNRVKLGFFLHSP-----FPSSEIY-KTLPI----------------REELLR 253 (854)
T ss_pred CCEEEEeCchhhHHHHHHHhh------CCCCcEEEEecCC-----CCChHHH-hhCCc----------------HHHHHH
Confidence 489999999999999998763 3567899999984 4543221 01221 111234
Q ss_pred HhhcCCeEEEechhHHHHHHHhh---cCCcccc-----ccc--cCCCcEEEeeCCCcCCCCCCccccccccCCCcccccc
Q 006770 489 GLKTADRVVTVSRGYSWELKTAE---GGWGLHN-----IIN--EVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLD 558 (632)
Q Consensus 489 ~l~~AD~VItVS~~~a~el~~~~---~G~gL~~-----il~--~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~e 558 (632)
++-.||.|-.=+..|++...+.. .|..... .+. ...-++.+.|=|||.+.|.-... ..
T Consensus 254 glL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~------------~~ 321 (854)
T PLN02205 254 ALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLS------------LP 321 (854)
T ss_pred HHhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhc------------Ch
Confidence 66789999999998888775521 1210000 000 02234667788998876643210 00
Q ss_pred cccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccCC------CcEEEEEec
Q 006770 559 TLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQ------DVQLSHVGH 620 (632)
Q Consensus 559 d~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~~------dvqLVI~G~ 620 (632)
.......+++++++- +++.+|+-|.||+.-||+..=++|+.++++. .+.||-+..
T Consensus 322 ----~~~~~~~~l~~~~~~---~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~ 382 (854)
T PLN02205 322 ----ETEAKVKELIKQFCD---QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIAN 382 (854)
T ss_pred ----hHHHHHHHHHHHhcc---CCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEec
Confidence 011223346677652 2567999999999999999999999998752 678887775
No 110
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=96.31 E-value=0.0098 Score=69.53 Aligned_cols=212 Identities=19% Similarity=0.230 Sum_probs=104.5
Q ss_pred ccEEEEcCcchhHHHH-HHHHHhhhcCC-------CCCCeEEEEEeCCcccC--CCCCCccccCCCCcc----------c
Q 006770 409 NLVFIANDWHTALLPV-YLKAYYRDNGL-------MQYTRSLLVIHNIAHQG--RGPVSDFVYTDLPGH----------Y 468 (632)
Q Consensus 409 pDIIHaHdw~sallp~-~l~~~~~~~~~-------~~~iPvV~TIHn~~~qg--~~p~~~l~~~glp~~----------~ 468 (632)
+-+||.||-|++++.+ +++.+..++++ ....-+++|-|+....| .||.+.+..+ +|.. +
T Consensus 215 ~~~ihlNdtHpa~ai~ElmR~L~de~gl~~~eA~eiv~~~~~fTnHT~vpealE~wp~~l~~~~-Lpr~~~ii~ein~~f 293 (713)
T PF00343_consen 215 KVVIHLNDTHPAFAIPELMRILMDEEGLSWDEAWEIVRKTFAFTNHTPVPEALEKWPVDLFERY-LPRHLEIIYEINRRF 293 (713)
T ss_dssp HEEEEEESSTTTTHHHHHHHHHHHTT---HHHHHHHHHHHEEEEE--SSGGGS-EEEHHHHHHH-SHHHHHHHHHHHHHH
T ss_pred ceEEeecCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHhceeeeccccccccccccCHHHHHHH-ChHHHHHHHHHhHHH
Confidence 4599999999877544 44544433332 11234899999975543 3554433210 1110 0
Q ss_pred cc--------------cccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCC
Q 006770 469 LD--------------LFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGI 534 (632)
Q Consensus 469 ~~--------------~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGI 534 (632)
.. .+.......+..++|...++..+..|..||.-+.+.+.+..+ .......++++.-|.|||
T Consensus 294 ~~~~~~~~~~d~~~~~~l~ii~~~~~~~~~Ma~LAl~~S~~vNGVS~LH~ev~k~~~f----~~f~~l~P~kf~nvTNGV 369 (713)
T PF00343_consen 294 LDELRRKYPGDEDQIRRLSIIEEGNSKRFRMANLALRGSHSVNGVSKLHGEVLKQMVF----KDFYELWPEKFGNVTNGV 369 (713)
T ss_dssp HHHHHHHSTT-HHHHHHHSSEETSSSCEEEHHHHHHHCESEEEESSHHHHHHHHHTTT----HHHHHHSGGGEEE----B
T ss_pred HHHHHHHhcCcchhhhhcccccccchhhcchhHHHHHhcccccchHHHHHHHHHHHHh----hhhhhcCCceeeccccCc
Confidence 00 011111112245778888999999999999988866654211 111112467899999999
Q ss_pred cCCCCC----Ccccc----ccccC---------CCcccccc-----cccCCchHHHHH----HHHHhCCCCCCCCcEEEE
Q 006770 535 DTKEWS----PMYDI----HLTSD---------GYTNYCLD-----TLHTGKPQCKAA----LQREFGLPVRDDVPVIGF 588 (632)
Q Consensus 535 D~~~F~----P~~~~----~l~~~---------~~~~~s~e-----d~~~~K~~~k~~----Lrk~lGL~~~~d~pvIlf 588 (632)
....|- |.... .+..+ ....+..+ ++..-|..+|.. ++++.|+..+++...+++
T Consensus 370 h~rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfdv~ 449 (713)
T PF00343_consen 370 HPRRWLSQANPELSELITEYIGDDWRTDLEQLEKLEKFADDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFDVQ 449 (713)
T ss_dssp -TCCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEE
T ss_pred cCcccccccCHHHHHHHHHHhccccccCHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhh
Confidence 999994 32111 11100 01111110 011112222222 345678777788888999
Q ss_pred EcCCccccCHHHH-HH---HHhhccC------CCcEEEEEecChhhH
Q 006770 589 IGRLDHQKGVDLI-AE---AIPWMMG------QDVQLSHVGHWQTRF 625 (632)
Q Consensus 589 VGRL~~qKGvdlL-Le---A~~~L~~------~dvqLVI~G~G~~~l 625 (632)
+-|+..+|...+. +. -..+++. .++++|++|...+.+
T Consensus 450 ~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d 496 (713)
T PF00343_consen 450 ARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGD 496 (713)
T ss_dssp ES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-
T ss_pred hhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCc
Confidence 9999999999983 33 3333432 279999999876533
No 111
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.30 E-value=0.043 Score=54.68 Aligned_cols=90 Identities=38% Similarity=0.526 Sum_probs=64.8
Q ss_pred cCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHH
Q 006770 492 TADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAAL 571 (632)
Q Consensus 492 ~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~L 571 (632)
.++.+++.+......+... . ...++..++|++|...+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~----------------------------- 189 (381)
T COG0438 150 LADRVIAVSPALKELLEAL--G---------VPNKIVVIPNGIDTEKFAPA----------------------------- 189 (381)
T ss_pred cccEEEECCHHHHHHHHHh--C---------CCCCceEecCCcCHHHcCcc-----------------------------
Confidence 4788999998765444431 1 23378899999998876542
Q ss_pred HHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccCC--CcEEEEEecChh
Q 006770 572 QREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQ--DVQLSHVGHWQT 623 (632)
Q Consensus 572 rk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~~--dvqLVI~G~G~~ 623 (632)
..++..+.....++++||+.+.||++.+++++..+... ++.++++|.|+.
T Consensus 190 --~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 241 (381)
T COG0438 190 --RIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPE 241 (381)
T ss_pred --ccCCCcccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCc
Confidence 01111111136899999999999999999999998764 389999999975
No 112
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=96.30 E-value=0.15 Score=55.29 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=31.5
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~ 323 (632)
|||++-... +|+ --+...+.+.|.++||+|.|.+..+..
T Consensus 1 MkIwiDi~~-p~h------vhfFk~~I~eL~~~GheV~it~R~~~~ 39 (335)
T PF04007_consen 1 MKIWIDITH-PAH------VHFFKNIIRELEKRGHEVLITARDKDE 39 (335)
T ss_pred CeEEEECCC-chH------HHHHHHHHHHHHhCCCEEEEEEeccch
Confidence 899988765 443 357888999999999999999987654
No 113
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=96.29 E-value=0.027 Score=63.67 Aligned_cols=165 Identities=20% Similarity=0.207 Sum_probs=89.8
Q ss_pred CccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHHH
Q 006770 408 GNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFA 487 (632)
Q Consensus 408 ~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~r 487 (632)
.-|+|-+||+|-.++|.+++.. ....++.+.+|.. ||...+.. -+|. .-.++
T Consensus 141 ~~D~VWVhDYhL~llP~~LR~~------~~~~~IgfFlHiP-----FPs~e~fr-~lP~---------------r~eiL- 192 (474)
T PF00982_consen 141 PGDLVWVHDYHLMLLPQMLRER------GPDARIGFFLHIP-----FPSSEIFR-CLPW---------------REEIL- 192 (474)
T ss_dssp TT-EEEEESGGGTTHHHHHHHT------T--SEEEEEE-S---------HHHHT-TSTT---------------HHHHH-
T ss_pred CCCEEEEeCCcHHHHHHHHHhh------cCCceEeeEEecC-----CCCHHHHh-hCCc---------------HHHHH-
Confidence 5699999999999999988763 3568999999984 44432110 1110 12233
Q ss_pred HHhhcCCeEEEechhHHHHHHHh---hcCCcccc---cccc--CCCcEEEeeCCCcCCCCCCccccccccCCCccccccc
Q 006770 488 AGLKTADRVVTVSRGYSWELKTA---EGGWGLHN---IINE--VDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDT 559 (632)
Q Consensus 488 ~~l~~AD~VItVS~~~a~el~~~---~~G~gL~~---il~~--~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed 559 (632)
.++-.||.|-.-+..+++...+. .+|..... .+.. ..-++.+.|=|||.+.|...... +
T Consensus 193 ~glL~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~------------~- 259 (474)
T PF00982_consen 193 RGLLGADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARS------------P- 259 (474)
T ss_dssp HHHTTSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-------------S-
T ss_pred HHhhcCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccC------------h-
Confidence 46678999999999998877542 12210000 1111 12246677778888766322100 0
Q ss_pred ccCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC------CCcEEEEEec
Q 006770 560 LHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG------QDVQLSHVGH 620 (632)
Q Consensus 560 ~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~------~dvqLVI~G~ 620 (632)
.-....+.++++++- +..+|+-+.|++..||+..=++|+.++++ ..+.|+-++.
T Consensus 260 ---~v~~~~~~l~~~~~~----~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~ 319 (474)
T PF00982_consen 260 ---EVQERAEELREKFKG----KRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAV 319 (474)
T ss_dssp ------HHHHHHHHHTTT-----SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--
T ss_pred ---HHHHHHHHHHHhcCC----CcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEee
Confidence 011223457777751 35899999999999999999999999875 2688887775
No 114
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=96.11 E-value=0.039 Score=57.89 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=36.8
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|+|++|+...+|| ..||+..-+.+|.+.|-+.-..|..|++.
T Consensus 1 ~~V~ll~EGtYPy-v~GGVSsW~~~LI~glpe~~F~v~~i~a~ 42 (268)
T PF11997_consen 1 MDVCLLTEGTYPY-VRGGVSSWVHQLIRGLPEHEFHVYAIGAN 42 (268)
T ss_pred CeEEEEecCcCCC-CCCchhHHHHHHHhcCCCceEEEEEEeCC
Confidence 8999999999999 68999999999999987776777777765
No 115
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=96.10 E-value=0.21 Score=53.92 Aligned_cols=156 Identities=15% Similarity=0.108 Sum_probs=86.6
Q ss_pred CCCccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCC-CCcc-cc-c-cccccCCCCch
Q 006770 406 GDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTD-LPGH-YL-D-LFKLYDPVGGE 481 (632)
Q Consensus 406 ~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~g-lp~~-~~-~-~l~~~~p~~g~ 481 (632)
++.|||..=-.-++.-.|++.+ +.++|++.-+|.... ..+++..+. .+.. .. + .+-+| +
T Consensus 148 r~~Pdi~IDtMGY~fs~p~~r~--------l~~~~V~aYvHYP~i----S~DML~~l~qrq~s~~l~~~KlaY~-----r 210 (465)
T KOG1387|consen 148 RFPPDIFIDTMGYPFSYPIFRR--------LRRIPVVAYVHYPTI----STDMLKKLFQRQKSGILVWGKLAYW-----R 210 (465)
T ss_pred hCCchheEecCCCcchhHHHHH--------HccCceEEEEecccc----cHHHHHHHHhhhhcchhhhHHHHHH-----H
Confidence 3679998755433333444322 368999999998421 112211100 0000 00 0 00011 1
Q ss_pred hHH-HHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccc
Q 006770 482 HFN-IFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTL 560 (632)
Q Consensus 482 ~~~-i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~ 560 (632)
.+. +...+=..||.|++.|......+..- | ...++.+|+--++++.+
T Consensus 211 lFa~lY~~~G~~ad~vm~NssWT~nHI~qi---W--------~~~~~~iVyPPC~~e~l--------------------- 258 (465)
T KOG1387|consen 211 LFALLYQSAGSKADIVMTNSSWTNNHIKQI---W--------QSNTCSIVYPPCSTEDL--------------------- 258 (465)
T ss_pred HHHHHHHhccccceEEEecchhhHHHHHHH---h--------hccceeEEcCCCCHHHH---------------------
Confidence 122 22333357999999998888887753 3 22456677666665432
Q ss_pred cCCchHHHHHHHHHhCCCCCCCCcEEEEEcCCccccCHH-HHHHHHhhccC------CCcEEEEEecCh
Q 006770 561 HTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVD-LIAEAIPWMMG------QDVQLSHVGHWQ 622 (632)
Q Consensus 561 ~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvd-lLLeA~~~L~~------~dvqLVI~G~G~ 622 (632)
....+- .+.+.+.++.+|.+.|+|... +=++|+-.... .+++|+|+|.-.
T Consensus 259 -----------ks~~~t-e~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScR 315 (465)
T KOG1387|consen 259 -----------KSKFGT-EGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCR 315 (465)
T ss_pred -----------HHHhcc-cCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccC
Confidence 222222 235678999999999999999 33344433222 279999999753
No 116
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=95.96 E-value=0.74 Score=50.36 Aligned_cols=120 Identities=23% Similarity=0.160 Sum_probs=66.6
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCe-EEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeE
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHR-VMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVD 356 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGhe-V~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~ 356 (632)
|+|++.+. .+||==.....|+++|.++|++ |.++...++. +.. .....++.
T Consensus 1 ~~ivl~~g------GTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~--e~~--------------------l~~~~~~~ 52 (357)
T COG0707 1 KKIVLTAG------GTGGHVFPALALAEELAKRGWEQVIVLGTGDGL--EAF--------------------LVKQYGIE 52 (357)
T ss_pred CeEEEEeC------CCccchhHHHHHHHHHHhhCccEEEEecccccc--eee--------------------eccccCce
Confidence 45666554 4777777788999999999996 5555322221 110 01123677
Q ss_pred EEEecCccccccCCCCCCCChhhHHHHHHHHHHH---HHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhc
Q 006770 357 FVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKA---AIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDN 433 (632)
Q Consensus 357 v~~I~~p~~~~~~~~iY~~~~~d~~~r~~lf~ka---v~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~ 433 (632)
+++|+...+.. ...+ .++.....+.++ +.++++ .++||+|.+-.++....+.++..
T Consensus 53 ~~~I~~~~~~~--~~~~-----~~~~~~~~~~~~~~~a~~il~---------~~kPd~vig~Ggyvs~P~~~Aa~----- 111 (357)
T COG0707 53 FELIPSGGLRR--KGSL-----KLLKAPFKLLKGVLQARKILK---------KLKPDVVIGTGGYVSGPVGIAAK----- 111 (357)
T ss_pred EEEEecccccc--cCcH-----HHHHHHHHHHHHHHHHHHHHH---------HcCCCEEEecCCccccHHHHHHH-----
Confidence 77777654432 1111 122222223333 344454 46899999854444434443332
Q ss_pred CCCCCCeEEEEEeCC
Q 006770 434 GLMQYTRSLLVIHNI 448 (632)
Q Consensus 434 ~~~~~iPvV~TIHn~ 448 (632)
..++|++.+..|.
T Consensus 112 --~~~iPv~ihEqn~ 124 (357)
T COG0707 112 --LLGIPVIIHEQNA 124 (357)
T ss_pred --hCCCCEEEEecCC
Confidence 3579999888874
No 117
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=95.66 E-value=0.099 Score=59.04 Aligned_cols=104 Identities=14% Similarity=0.074 Sum_probs=66.0
Q ss_pred hhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHH
Q 006770 490 LKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKA 569 (632)
Q Consensus 490 l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~ 569 (632)
...+|++++.|...+....+... .-...++.+.+-+||.+.+.+. .|. .+...+.
T Consensus 207 ~~~~~~~~~ns~~~~~~f~~~~~--------~L~~~d~~~~y~ei~~s~~~~~-----------~~~------~~~~~~~ 261 (495)
T KOG0853|consen 207 TGLAWKILVNSYFTKRQFKATFV--------SLSNSDITSTYPEIDGSWFTYG-----------QYE------SHLELRL 261 (495)
T ss_pred hhccceEecchhhhhhhhhhhhh--------hcCCCCcceeeccccchhcccc-----------ccc------cchhccc
Confidence 34578888877766655443211 1133448889999998776652 111 0111112
Q ss_pred HHHHHhCCCCCCCCcEEEEEcCCccccCHHHHHHHHhhccC-------CCcEEEEEec
Q 006770 570 ALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMG-------QDVQLSHVGH 620 (632)
Q Consensus 570 ~Lrk~lGL~~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~-------~dvqLVI~G~ 620 (632)
..|.+.|.. ....+++-+-|+.|.||++++++|+..+.. .+.+++++|+
T Consensus 262 ~~r~~~~v~--~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~ 317 (495)
T KOG0853|consen 262 PVRLYRGVS--GIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGS 317 (495)
T ss_pred ccceeeeec--ccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecC
Confidence 233344544 235678889999999999999999988764 2689999994
No 118
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=94.64 E-value=0.023 Score=51.53 Aligned_cols=42 Identities=26% Similarity=0.548 Sum_probs=33.1
Q ss_pred CcEEEEEcCCccccCHHHHHH-HHhhccC--CCcEEEEEecChhh
Q 006770 583 VPVIGFIGRLDHQKGVDLIAE-AIPWMMG--QDVQLSHVGHWQTR 624 (632)
Q Consensus 583 ~pvIlfVGRL~~qKGvdlLLe-A~~~L~~--~dvqLVI~G~G~~~ 624 (632)
.++|++.|++.+.||++.+++ |++.+.+ .+++|+|+|.++++
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~~ 46 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPDE 46 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-H
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHHH
Confidence 478999999999999999999 9988865 48999999998763
No 119
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.75 E-value=9 Score=41.27 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=30.8
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~ 323 (632)
|||++=... +|+ ..+...|...|.++||+|.+.|-.++.
T Consensus 1 mkVwiDI~n-~~h------vhfFk~lI~elekkG~ev~iT~rd~~~ 39 (346)
T COG1817 1 MKVWIDIGN-PPH------VHFFKNLIWELEKKGHEVLITCRDFGV 39 (346)
T ss_pred CeEEEEcCC-cch------hhHHHHHHHHHHhCCeEEEEEEeecCc
Confidence 788776654 454 357889999999999999999977665
No 120
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=88.96 E-value=2.3 Score=37.47 Aligned_cols=38 Identities=5% Similarity=-0.035 Sum_probs=25.6
Q ss_pred CCCccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCC
Q 006770 406 GDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNI 448 (632)
Q Consensus 406 ~~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~ 448 (632)
.++.||||.|...+.+.--.+-- + ...|.+.|+|-|.+
T Consensus 48 rE~I~IVHgH~a~S~l~hE~i~h-A----~~mGlktVfTDHSL 85 (90)
T PF08288_consen 48 RERIDIVHGHQAFSTLCHEAILH-A----RTMGLKTVFTDHSL 85 (90)
T ss_pred HcCeeEEEeehhhhHHHHHHHHH-H----HhCCCcEEeecccc
Confidence 36899999997666554322211 1 13589999999995
No 121
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=85.81 E-value=9.4 Score=39.84 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=28.3
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|||++.+.. ..-|=-+....|+++| +||+|++++..
T Consensus 1 MkIl~~v~~-----~G~GH~~R~~~la~~L--rg~~v~~~~~~ 36 (318)
T PF13528_consen 1 MKILFYVQG-----HGLGHASRCLALARAL--RGHEVTFITSG 36 (318)
T ss_pred CEEEEEeCC-----CCcCHHHHHHHHHHHH--ccCceEEEEcC
Confidence 899999864 2345556777889999 59999999965
No 122
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=82.75 E-value=14 Score=40.27 Aligned_cols=85 Identities=11% Similarity=-0.013 Sum_probs=46.9
Q ss_pred CCccEEEEcC-cchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHH
Q 006770 407 DGNLVFIAND-WHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNI 485 (632)
Q Consensus 407 ~~pDIIHaHd-w~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i 485 (632)
.+||+|-+|. -.+.++++++.. ..++|++ ++|.-... .|.+++ .
T Consensus 92 ~~Pd~vlv~GD~~~~la~alaA~-------~~~IPv~-HveaG~rs----------~~~~eE-----------------~ 136 (365)
T TIGR03568 92 LKPDLVVVLGDRFEMLAAAIAAA-------LLNIPIA-HIHGGEVT----------EGAIDE-----------------S 136 (365)
T ss_pred hCCCEEEEeCCchHHHHHHHHHH-------HhCCcEE-EEECCccC----------CCCchH-----------------H
Confidence 5899999984 555555554433 2588987 44542111 011111 0
Q ss_pred HHH-HhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeC-CCcC
Q 006770 486 FAA-GLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVN-GIDT 536 (632)
Q Consensus 486 ~r~-~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpN-GID~ 536 (632)
-+. .-+.|+...+.++..++.+.+. | . +++++.++-| ++|.
T Consensus 137 ~r~~i~~la~l~f~~t~~~~~~L~~e--g--~------~~~~i~~tG~~~iD~ 179 (365)
T TIGR03568 137 IRHAITKLSHLHFVATEEYRQRVIQM--G--E------DPDRVFNVGSPGLDN 179 (365)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHc--C--C------CCCcEEEECCcHHHH
Confidence 111 2245677777888777777651 2 1 5677777665 5554
No 123
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=82.66 E-value=6.3 Score=41.80 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=23.9
Q ss_pred CCC-cHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 292 KTG-GLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 292 ~~G-Glg~~v~~LakaLakrGheV~VVtP~ 320 (632)
.+| |=-.....++.+|.+ ||+|.+++..
T Consensus 8 g~G~GH~~r~~ala~~L~~-g~ev~~~~~~ 36 (321)
T TIGR00661 8 GEGFGHTTRSVAIGEALKN-DYEVSYIASG 36 (321)
T ss_pred ccCccHHHHHHHHHHHHhC-CCeEEEEEcC
Confidence 367 888889999999999 9999999744
No 124
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=80.83 E-value=1.7 Score=43.56 Aligned_cols=39 Identities=38% Similarity=0.484 Sum_probs=29.5
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~ 323 (632)
||||+.... |=-+.-+..|.++|.+.||+|.|++|....
T Consensus 1 M~ILlTNDD-------Gi~a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDD-------GIDAPGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS--------TTSHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred CeEEEEcCC-------CCCCHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 999999885 112345788999997788999999997653
No 125
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=77.05 E-value=3.7 Score=44.45 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=28.7
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|||++++. | ..|=+. -+..|+++|+++||+|+++++.
T Consensus 1 mrIl~~~~---p--~~GHv~-P~l~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 1 MRVLITTI---G--SRGDVQ-PLVALAWALRAAGHEVRVATPP 37 (401)
T ss_pred CeEEEEeC---C--CcchHH-HHHHHHHHHHHCCCeEEEeeCH
Confidence 89999975 3 134333 4558999999999999999975
No 126
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=74.54 E-value=4.1 Score=37.80 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=25.8
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|||+++.. |+....--......|..+.++|||+|.++.+.
T Consensus 1 Mki~fvmD---pi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMD---PIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES----GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeC---CHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 89999987 33211122356778899999999999999875
No 127
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=73.35 E-value=9.6 Score=43.84 Aligned_cols=46 Identities=9% Similarity=-0.093 Sum_probs=36.7
Q ss_pred CcEEEEEc--CCccccCHHHHHHHHhhccC--CCcEEEEEecChh-hHHHHH
Q 006770 583 VPVIGFIG--RLDHQKGVDLIAEAIPWMMG--QDVQLSHVGHWQT-RFGRDA 629 (632)
Q Consensus 583 ~pvIlfVG--RL~~qKGvdlLLeA~~~L~~--~dvqLVI~G~G~~-~le~~l 629 (632)
...+++++ || ++|-++.+|+|+..++. ++++|.+.|.|.+ ++.+.+
T Consensus 319 ~~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l 369 (519)
T TIGR03713 319 YETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLL 369 (519)
T ss_pred cceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHH
Confidence 34678888 99 99999999999999865 5999999998863 333433
No 128
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=72.73 E-value=31 Score=37.48 Aligned_cols=84 Identities=17% Similarity=0.103 Sum_probs=43.6
Q ss_pred CCccEEEEc-CcchhHHHHHHHHHhhhcCCCCCCeEEEEEeC-CcccCCCCCCccccCCCCccccccccccCCCCchhHH
Q 006770 407 DGNLVFIAN-DWHTALLPVYLKAYYRDNGLMQYTRSLLVIHN-IAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFN 484 (632)
Q Consensus 407 ~~pDIIHaH-dw~sallp~~l~~~~~~~~~~~~iPvV~TIHn-~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~ 484 (632)
.+||+|-+| |-.+.++++.++.+ .++| |.++|+ +... +. ..|.+++
T Consensus 66 ~~Pd~Vlv~GD~~~~la~alaA~~-------~~ip-v~HieaGlRs~------d~-~~g~~de----------------- 113 (346)
T PF02350_consen 66 EKPDAVLVLGDRNEALAAALAAFY-------LNIP-VAHIEAGLRSG------DR-TEGMPDE----------------- 113 (346)
T ss_dssp HT-SEEEEETTSHHHHHHHHHHHH-------TT-E-EEEES-----S-------T-TSSTTHH-----------------
T ss_pred cCCCEEEEEcCCchHHHHHHHHHH-------hCCC-EEEecCCCCcc------cc-CCCCchh-----------------
Confidence 479999999 55556665554432 5899 556665 2100 00 0122221
Q ss_pred HHHHHh-hcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeC
Q 006770 485 IFAAGL-KTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVN 532 (632)
Q Consensus 485 i~r~~l-~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpN 532 (632)
..|.++ +.|+.-.+.++.+++.+.+. | .+++++.++-|
T Consensus 114 ~~R~~i~~la~lhf~~t~~~~~~L~~~--G--------~~~~rI~~vG~ 152 (346)
T PF02350_consen 114 INRHAIDKLAHLHFAPTEEARERLLQE--G--------EPPERIFVVGN 152 (346)
T ss_dssp HHHHHHHHH-SEEEESSHHHHHHHHHT--T----------GGGEEE---
T ss_pred hhhhhhhhhhhhhccCCHHHHHHHHhc--C--------CCCCeEEEECh
Confidence 123333 56888888899999888762 2 26789888765
No 129
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=69.14 E-value=7.2 Score=35.52 Aligned_cols=28 Identities=43% Similarity=0.476 Sum_probs=20.5
Q ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 293 TGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 293 ~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
++|==.=...|+++|.++||+|.+.++.
T Consensus 8 t~Ghv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 8 TRGHVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp SHHHHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred ChhHHHHHHHHHHHHhccCCeEEEeecc
Confidence 3443344568999999999999999864
No 130
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=64.89 E-value=2.1e+02 Score=31.80 Aligned_cols=52 Identities=12% Similarity=0.154 Sum_probs=32.2
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEc-CCcc-ccCHHHHHHHHhhccC--CCcEEEEEec
Q 006770 568 KAALQREFGLPVRDDVPVIGFIG-RLDH-QKGVDLIAEAIPWMMG--QDVQLSHVGH 620 (632)
Q Consensus 568 k~~Lrk~lGL~~~~d~pvIlfVG-RL~~-qKGvdlLLeA~~~L~~--~dvqLVI~G~ 620 (632)
|..+|+++|++.+ ...+.+..| |-.+ ..-...+.+|+..+.. .+.+|++-=-
T Consensus 175 r~~ar~~l~~~~~-~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~ 230 (381)
T COG0763 175 REAAREKLGIDAD-EKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLV 230 (381)
T ss_pred HHHHHHHhCCCCC-CCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence 4558899999853 333445554 3332 3345677788887774 4888876543
No 131
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=62.79 E-value=16 Score=34.15 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=31.5
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCe-EEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHR-VMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGhe-V~VVtP 319 (632)
|||+++... +|| .+-.++-..++++++.+.||+ |.|+-.
T Consensus 1 m~~~iv~~~-~Py--~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTG-PAY--GTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcC-CCC--CCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 899888775 786 455678899999999999998 477753
No 132
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=60.19 E-value=13 Score=42.62 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=29.0
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y 321 (632)
-||+.+.+.+ .+-=-.++..++++|+++||+|+|++|..
T Consensus 21 ~kIl~~~P~~-----~~SH~~~~~~l~~~La~rGH~VTvi~p~~ 59 (507)
T PHA03392 21 ARILAVFPTP-----AYSHHSVFKVYVEALAERGHNVTVIKPTL 59 (507)
T ss_pred ccEEEEcCCC-----CCcHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4688775431 12235778899999999999999998853
No 133
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=60.13 E-value=12 Score=37.74 Aligned_cols=32 Identities=28% Similarity=0.613 Sum_probs=26.6
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
|||++| ||.|.+-..|++.|++.||+|+++..
T Consensus 1 MkI~II----------GG~G~mG~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVL----------GGTGDQGKGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEE----------cCCCHHHHHHHHHHHhCCCEEEEEEc
Confidence 787776 66777888999999999999998754
No 134
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=57.19 E-value=99 Score=30.54 Aligned_cols=79 Identities=24% Similarity=0.148 Sum_probs=43.9
Q ss_pred CCccEEEEcCcchhHHHHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccccccCCCCchhHHHH
Q 006770 407 DGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIF 486 (632)
Q Consensus 407 ~~pDIIHaHdw~sallp~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l~~~~p~~g~~~~i~ 486 (632)
..+|+|.+.+... ++. +... . +.+.++|.++-+|. -|..+|...-...+ ++ | ...++.
T Consensus 58 ~~~dll~aTsmld-La~-l~gL-~---p~l~~~p~ilYFHE--NQl~YP~~~~~~rd--------~~-~-----~~~ni~ 115 (168)
T PF12038_consen 58 HSYDLLFATSMLD-LAT-LRGL-R---PDLANVPKILYFHE--NQLAYPVSPGQERD--------FQ-Y-----GMNNIY 115 (168)
T ss_pred cCCCEEEeecccc-HHH-HHhh-c---cCCCCCCEEEEEec--CcccCCCCCCcccc--------cc-H-----HHHHHH
Confidence 4679999987532 221 1111 1 12468999999998 34345543211000 00 1 123443
Q ss_pred HHHhhcCCeEEEechhHHHHHHH
Q 006770 487 AAGLKTADRVVTVSRGYSWELKT 509 (632)
Q Consensus 487 r~~l~~AD~VItVS~~~a~el~~ 509 (632)
. .-.||+|+..|....+...+
T Consensus 116 s--aLaAD~v~FNS~~nr~sFL~ 136 (168)
T PF12038_consen 116 S--ALAADRVVFNSAFNRDSFLD 136 (168)
T ss_pred H--HHhceeeeecchhhHHHHHH
Confidence 2 24699999999988876654
No 135
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=56.18 E-value=1e+02 Score=29.59 Aligned_cols=19 Identities=26% Similarity=0.157 Sum_probs=16.6
Q ss_pred hcCCeEEEechhHHHHHHH
Q 006770 491 KTADRVVTVSRGYSWELKT 509 (632)
Q Consensus 491 ~~AD~VItVS~~~a~el~~ 509 (632)
..+|..++.|+..++++.+
T Consensus 136 ~~~D~y~Vase~~~~~l~~ 154 (169)
T PF06925_consen 136 PGVDRYFVASEEVKEELIE 154 (169)
T ss_pred CCCCEEEECCHHHHHHHHH
Confidence 4589999999999999885
No 136
>PRK06756 flavodoxin; Provisional
Probab=54.99 E-value=24 Score=33.06 Aligned_cols=38 Identities=13% Similarity=0.309 Sum_probs=32.2
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
+|||+++.. +.+|-.+.++..+++.|.+.|++|.++-.
T Consensus 1 mmkv~IiY~-----S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFA-----SMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEE-----CCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 489998864 35899999999999999999999987743
No 137
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=54.06 E-value=18 Score=36.49 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=26.9
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~ 322 (632)
|||++|+.. |= +-..+.+...+|||+|+-|+....
T Consensus 1 mKIaiIgAs-------G~---~Gs~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGAS-------GK---AGSRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEecC-------ch---hHHHHHHHHHhCCCeeEEEEeChH
Confidence 899999763 43 445677888999999999986543
No 138
>PRK10037 cell division protein; Provisional
Probab=53.89 E-value=17 Score=37.27 Aligned_cols=35 Identities=29% Similarity=0.531 Sum_probs=27.9
Q ss_pred cEEEEEecccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEc
Q 006770 278 MNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg--~~v~~LakaLakrGheV~VVt 318 (632)
|||+-++.. -||+| +.+.+|+.+|+++|++|.+|=
T Consensus 1 ~~~iav~n~------KGGvGKTT~a~nLA~~La~~G~rVLlID 37 (250)
T PRK10037 1 MAILGLQGV------RGGVGTTSITAALAWSLQMLGENVLVID 37 (250)
T ss_pred CcEEEEecC------CCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 777777653 57776 456899999999999999993
No 139
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=52.39 E-value=24 Score=38.34 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 267 AKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 267 ~~~~~~~~~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
++-|-+.++ .|||+++ ||.|-.-..|++.|.++||+|.++..
T Consensus 12 ~~~~~~~~~-~~~IlVt----------GgtGfIG~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 12 EREPYWPSE-KLRICIT----------GAGGFIASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCCCCCC-CCEEEEE----------CCccHHHHHHHHHHHhCCCEEEEEEe
Confidence 344555664 4798865 77778888899999999999999873
No 140
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=51.73 E-value=1.2e+02 Score=33.60 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=30.1
Q ss_pred CCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEccC
Q 006770 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARR--GHRVMVVAPH 320 (632)
Q Consensus 276 ~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakr--GheV~VVtP~ 320 (632)
+.|||+|-+..-+.. |==.....++.+|++. |.+|.+|+..
T Consensus 8 ~~~Ri~~Yshd~~Gl----GHlrR~~~Ia~aLv~d~~~~~Il~IsG~ 50 (400)
T COG4671 8 KRPRILFYSHDLLGL----GHLRRALRIAHALVEDYLGFDILIISGG 50 (400)
T ss_pred ccceEEEEehhhccc----hHHHHHHHHHHHHhhcccCceEEEEeCC
Confidence 456999998763221 2335677889999998 9999999843
No 141
>PLN00016 RNA-binding protein; Provisional
Probab=51.37 E-value=15 Score=39.89 Aligned_cols=39 Identities=26% Similarity=0.402 Sum_probs=31.0
Q ss_pred CCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 276 ~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
..|||++++.. .||.|..-..|++.|.+.||+|++++..
T Consensus 51 ~~~~VLVt~~~------~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 51 EKKKVLIVNTN------SGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ccceEEEEecc------CCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 34788887653 4777777888899999999999999854
No 142
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=51.28 E-value=31 Score=32.10 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=31.6
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|||+.|..... ..|-...++..+.+.+.++|++|.++-+.
T Consensus 1 Mkilii~gS~r---~~~~t~~l~~~~~~~l~~~g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPR---KNSNTRKLAEAVAEQLEEAGAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSS---TTSHHHHHHHHHHHHHHHTTEEEEEEECT
T ss_pred CEEEEEECcCC---CCCHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 89999987532 35777888888888999999999999654
No 143
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=49.60 E-value=14 Score=39.64 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCCccchhhhcCcCCC
Q 006770 98 KKVLAMQKQLLQQISERRKLVSSIKSDIANSEEDEVSYEERENSFSD 144 (632)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (632)
-++||+|+.=|.+||+- +-..|.+.++|+.+..|.++
T Consensus 321 ~~~L~~~~pel~~l~~s----------~~~~e~~~~~~~sss~ssss 357 (407)
T KOG2130|consen 321 ARLLALQRPELADLADS----------THLEESTGLASDSSSDSSSS 357 (407)
T ss_pred HHHHhhcChhHHHHhhh----------hccccccCcccccccccccc
Confidence 46899999999998863 34446667766655544443
No 144
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=47.78 E-value=36 Score=33.45 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=29.6
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
||++.|+.. ...-|-.+.+.+|+.+|+++|++|.+|=.
T Consensus 17 ~kvI~v~s~----kgG~GKTt~a~~LA~~la~~G~rVllID~ 54 (204)
T TIGR01007 17 IKVLLITSV----KPGEGKSTTSANIAVAFAQAGYKTLLIDG 54 (204)
T ss_pred CcEEEEecC----CCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 898888763 12234566899999999999999999843
No 145
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=46.90 E-value=33 Score=33.45 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=34.0
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
+|+|+.|+.. +..|=.+.+..|.+.|.++|+.|.+|=-.
T Consensus 1 m~~Il~ivG~-----k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 1 MMKILGIVGY-----KNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred CCcEEEEEec-----CCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 5899999763 67899999999999999999999999643
No 146
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=46.76 E-value=28 Score=33.35 Aligned_cols=31 Identities=32% Similarity=0.627 Sum_probs=24.8
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
+|||.+| |+|.+-..+++.|.+.||+|.++-
T Consensus 1 m~~Ig~I-----------GlG~mG~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFI-----------GLGNMGSAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE-------------SHHHHHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEE-----------chHHHHHHHHHHHHhcCCeEEeec
Confidence 5788888 567888899999999999999874
No 147
>PRK09271 flavodoxin; Provisional
Probab=46.14 E-value=38 Score=32.40 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=31.1
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
|||+++.. +.+|-.+.++..|+..|...|++|.+.-
T Consensus 1 mkv~IvY~-----S~tGnTe~~A~~ia~~l~~~g~~v~~~~ 36 (160)
T PRK09271 1 MRILLAYA-----SLSGNTREVAREIEERCEEAGHEVDWVE 36 (160)
T ss_pred CeEEEEEE-----cCCchHHHHHHHHHHHHHhCCCeeEEEe
Confidence 88888865 3689999999999999999999987663
No 148
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=45.73 E-value=5e+02 Score=30.84 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=30.7
Q ss_pred HHHHHHhCCCCCCCCcEE-EEEc-CCcc-ccCHHHHHHHHh--hccCCCcEEEEEec
Q 006770 569 AALQREFGLPVRDDVPVI-GFIG-RLDH-QKGVDLIAEAIP--WMMGQDVQLSHVGH 620 (632)
Q Consensus 569 ~~Lrk~lGL~~~~d~pvI-lfVG-RL~~-qKGvdlLLeA~~--~L~~~dvqLVI~G~ 620 (632)
.+.++++|++. +.++| ++.| |-.+ ..-...+++|+. .+. .+.++++.-.
T Consensus 401 ~~~r~~lgl~~--~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~-~~l~fvvp~a 454 (608)
T PRK01021 401 LSWKEQLHLPS--DKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA-STHQLLVSSA 454 (608)
T ss_pred HHHHHHcCCCC--CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc-cCeEEEEecC
Confidence 44688899963 45555 4444 3333 445678888887 543 4688877543
No 149
>CHL00194 ycf39 Ycf39; Provisional
Probab=45.27 E-value=26 Score=36.94 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=26.0
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|||+++ ||.|..-..|+++|.++||+|++++..
T Consensus 1 MkIlVt----------GatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI----------GATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE----------CCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 677765 666667777888999999999999743
No 150
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=44.97 E-value=25 Score=35.83 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 295 GLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 295 Glg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|+|.+-..+++.|.++||+|.+|-..
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 67889999999999999999999643
No 151
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=44.95 E-value=8.6 Score=43.18 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHHHCCCeEEEEccCC
Q 006770 295 GLGDVAGALPKALARRGHRVMVVAPHY 321 (632)
Q Consensus 295 Glg~~v~~LakaLakrGheV~VVtP~y 321 (632)
.=-..+..|+++|+++||+|++++|..
T Consensus 11 SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 11 SHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp -SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred CHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 335678999999999999999999854
No 152
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=44.51 E-value=30 Score=36.02 Aligned_cols=37 Identities=35% Similarity=0.397 Sum_probs=28.5
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~ 322 (632)
||||+.... |=....+..|.++|.+.| +|.|++|...
T Consensus 1 M~ILltNDD-------Gi~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 37 (244)
T TIGR00087 1 MKILLTNDD-------GIHSPGIRALYQALKELG-EVTVVAPARQ 37 (244)
T ss_pred CeEEEECCC-------CCCCHhHHHHHHHHHhCC-CEEEEeCCCC
Confidence 899988775 222345788889999988 9999999754
No 153
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=43.57 E-value=30 Score=36.69 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=26.3
Q ss_pred CCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 275 ~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
+..|||+++. .|++|.++ +..|++.||+|++++..
T Consensus 3 ~~~m~I~IiG--------~GaiG~~l---A~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIG--------TGAIGGFY---GAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEEC--------CCHHHHHH---HHHHHHCCCeEEEEEeC
Confidence 4569999984 46666654 56788899999999854
No 154
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=43.48 E-value=36 Score=32.20 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=31.3
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVV 317 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VV 317 (632)
||||+++.. +.+|..+.++..++..|...|++|.+.
T Consensus 1 M~ki~Ivy~-----S~tGnTe~vA~~i~~~l~~~~~~~~~~ 36 (151)
T COG0716 1 MMKILIVYG-----SRTGNTEKVAEIIAEELGADGFEVDID 36 (151)
T ss_pred CCeEEEEEE-----cCCCcHHHHHHHHHHHhccCCceEEEe
Confidence 589999876 368999999999999999999999554
No 155
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=43.03 E-value=26 Score=38.93 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=29.5
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
+|||+++..- . =|--.-...|+++|.++||+|+.+|..
T Consensus 1 ~mkil~~~~~-----~-~Ghv~p~~aL~~eL~~~gheV~~~~~~ 38 (406)
T COG1819 1 RMKILFVVCG-----A-YGHVNPCLALGKELRRRGHEVVFASTG 38 (406)
T ss_pred CceEEEEecc-----c-cccccchHHHHHHHHhcCCeEEEEeCH
Confidence 5999999752 1 344455778999999999999999954
No 156
>PLN00198 anthocyanidin reductase; Provisional
Probab=41.91 E-value=48 Score=35.09 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=27.9
Q ss_pred CCCCCCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 271 PLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 271 ~~~~~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
.|.++.+|+|++. ||.|-.-..|+++|.++|++|.+++.
T Consensus 3 ~~~~~~~~~vlIt----------G~~GfIG~~l~~~L~~~g~~V~~~~r 41 (338)
T PLN00198 3 TLTPTGKKTACVI----------GGTGFLASLLIKLLLQKGYAVNTTVR 41 (338)
T ss_pred cccCCCCCeEEEE----------CCchHHHHHHHHHHHHCCCEEEEEEC
Confidence 4555556676654 55566666788999999999987764
No 157
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=41.50 E-value=43 Score=32.89 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=31.7
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
||+|++-.. ..|-.+..+..++..|.++|++|.+.=
T Consensus 1 Mk~LIlYst-----r~GqT~kIA~~iA~~L~e~g~qvdi~d 36 (175)
T COG4635 1 MKTLILYST-----RDGQTRKIAEYIASHLRESGIQVDIQD 36 (175)
T ss_pred CceEEEEec-----CCCcHHHHHHHHHHHhhhcCCeeeeee
Confidence 899988653 678899999999999999999999984
No 158
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=41.04 E-value=26 Score=37.37 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=31.2
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y 321 (632)
|||+++.. |+....--.....+|..+.+++||+|.++.|..
T Consensus 1 m~~~~~~~---~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMD---PIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeC---CHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 89999976 332233334567889999999999999999863
No 159
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=40.50 E-value=54 Score=33.07 Aligned_cols=36 Identities=14% Similarity=0.011 Sum_probs=29.0
Q ss_pred CcEEEEEecccCCCCCCCcHHHHH--HHHHHHHHHCCCeEEEEccC
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVA--GALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v--~~LakaLakrGheV~VVtP~ 320 (632)
.+||++-. +||.+.+- .+|.+.|.+.||+|.||+..
T Consensus 5 ~k~IllgV--------TGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 5 GKRIGFGL--------TGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCEEEEEE--------cCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 35777653 58888875 79999999999999999754
No 160
>PRK06703 flavodoxin; Provisional
Probab=40.00 E-value=53 Score=30.81 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=31.9
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
+|||+++.. +.+|-...++..|++.|...|++|.++-.
T Consensus 1 mmkv~IiY~-----S~tGnT~~iA~~ia~~l~~~g~~v~~~~~ 38 (151)
T PRK06703 1 MAKILIAYA-----SMSGNTEDIADLIKVSLDAFDHEVVLQEM 38 (151)
T ss_pred CCeEEEEEE-----CCCchHHHHHHHHHHHHHhcCCceEEEeh
Confidence 488888754 35799999999999999999999988753
No 161
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=39.46 E-value=33 Score=36.65 Aligned_cols=37 Identities=41% Similarity=0.720 Sum_probs=27.0
Q ss_pred cEEEEEecccCCCCCCCcHHHH--HHHHHHHHHHCCCeEEEEccCC
Q 006770 278 MNVILVAAECGPWSKTGGLGDV--AGALPKALARRGHRVMVVAPHY 321 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~--v~~LakaLakrGheV~VVtP~y 321 (632)
|||++++- .||+|.- ...+|-+++++|++|.+++.+.
T Consensus 1 ~r~~~~~G-------KGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dp 39 (305)
T PF02374_consen 1 MRILFFGG-------KGGVGKTTVAAALALALARRGKRTLLVSTDP 39 (305)
T ss_dssp -SEEEEEE-------STTSSHHHHHHHHHHHHHHTTS-EEEEESST
T ss_pred CeEEEEec-------CCCCCcHHHHHHHHHHHhhCCCCeeEeecCC
Confidence 88999874 4777654 4557778899999999998653
No 162
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=39.10 E-value=95 Score=35.52 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=27.9
Q ss_pred CcEEEEEecccCCCCCCCcHHH-HHHHHHHHHHHCCCeEEEEccC
Q 006770 277 VMNVILVAAECGPWSKTGGLGD-VAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~-~v~~LakaLakrGheV~VVtP~ 320 (632)
..||++.. +||++. .+.+|.+.|.+.|++|.|++..
T Consensus 70 ~k~IllgV--------tGsIAayka~~lvr~L~k~G~~V~VvmT~ 106 (475)
T PRK13982 70 SKRVTLII--------GGGIAAYKALDLIRRLKERGAHVRCVLTK 106 (475)
T ss_pred CCEEEEEE--------ccHHHHHHHHHHHHHHHhCcCEEEEEECc
Confidence 46788775 466554 5788999999999999999754
No 163
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=39.04 E-value=41 Score=35.27 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=26.8
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~ 323 (632)
||||+....= .. .-| +..|.++|.+ +|+|+|++|....
T Consensus 1 M~ILvtNDDG-i~--apG----l~aL~~~l~~-~~~V~VvAP~~~~ 38 (253)
T PRK13933 1 MNILLTNDDG-IN--AEG----INTLAELLSK-YHEVIIVAPENQR 38 (253)
T ss_pred CeEEEEcCCC-CC--Chh----HHHHHHHHHh-CCcEEEEccCCCC
Confidence 8999988762 21 123 7777788865 5799999997543
No 164
>PRK09739 hypothetical protein; Provisional
Probab=38.98 E-value=73 Score=31.46 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=30.3
Q ss_pred CCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 276 ~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
.+|||++|... |. ..|=....+..+.+.+.+.||+|+++-.
T Consensus 2 ~mmkiliI~~s--p~-~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 2 QSMRIYLVWAH--PR-HDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCceEEEEEcC--CC-CCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 47999999875 53 2233566777778888889999998854
No 165
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=38.95 E-value=50 Score=37.07 Aligned_cols=35 Identities=29% Similarity=0.522 Sum_probs=29.2
Q ss_pred CCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 275 ~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
...|||+++ ||.|-.-..|++.|.++||+|.++..
T Consensus 118 ~~~mkILVT----------GatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 118 RKRLRIVVT----------GGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred cCCCEEEEE----------CCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 556998875 77788888899999999999998863
No 166
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=38.18 E-value=48 Score=35.10 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=28.4
Q ss_pred CCcEEEEEecccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEc
Q 006770 276 NVMNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 276 ~~MKIL~It~e~~P~~~~GGlg--~~v~~LakaLakrGheV~VVt 318 (632)
..|||+-|. . -||+| +.+.+|+.+|+++|++|.+|=
T Consensus 2 ~~~~~iai~-~------KGGvGKTt~~~nLa~~la~~g~kVLliD 39 (295)
T PRK13234 2 SKLRQIAFY-G------KGGIGKSTTSQNTLAALVEMGQKILIVG 39 (295)
T ss_pred CcceEEEEE-C------CCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 468887774 2 46665 467899999999999999994
No 167
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=38.01 E-value=44 Score=35.03 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=26.7
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~ 323 (632)
||||+....=. -+.-+..|.++|.+ +|+|.|++|....
T Consensus 1 M~ILlTNDDGi-------~a~Gi~aL~~~l~~-~~~V~VvAP~~~q 38 (253)
T PRK13935 1 MNILVTNDDGI-------TSPGIIILAEYLSE-KHEVFVVAPDKER 38 (253)
T ss_pred CeEEEECCCCC-------CCHHHHHHHHHHHh-CCcEEEEccCCCC
Confidence 89999887611 12236777788865 5799999997543
No 168
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=38.00 E-value=45 Score=35.04 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=28.3
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCC
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~ 323 (632)
.||||+....=. -..-+..|.++|.+.| +|.||+|....
T Consensus 5 ~M~ILltNDDGi-------~a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 43 (257)
T PRK13932 5 KPHILVCNDDGI-------EGEGIHVLAASMKKIG-RVTVVAPAEPH 43 (257)
T ss_pred CCEEEEECCCCC-------CCHHHHHHHHHHHhCC-CEEEEcCCCCC
Confidence 389999887521 1234777888888888 89999997543
No 169
>PLN02778 3,5-epimerase/4-reductase
Probab=37.90 E-value=49 Score=34.82 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=25.9
Q ss_pred CCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 276 ~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
..|||+++ ||.|-.=..|++.|.++||+|++..
T Consensus 8 ~~~kiLVt----------G~tGfiG~~l~~~L~~~g~~V~~~~ 40 (298)
T PLN02778 8 ATLKFLIY----------GKTGWIGGLLGKLCQEQGIDFHYGS 40 (298)
T ss_pred CCCeEEEE----------CCCCHHHHHHHHHHHhCCCEEEEec
Confidence 34898875 6777777888899999999997643
No 170
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=37.13 E-value=47 Score=34.73 Aligned_cols=32 Identities=34% Similarity=0.597 Sum_probs=26.5
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|||+++ ||.+. -..|++.|.+.||+|++.+..
T Consensus 1 m~ILvl----------GGT~e-gr~la~~L~~~g~~v~~s~~t 32 (256)
T TIGR00715 1 MTVLLM----------GGTVD-SRAIAKGLIAQGIEILVTVTT 32 (256)
T ss_pred CeEEEE----------echHH-HHHHHHHHHhCCCeEEEEEcc
Confidence 788776 67776 899999999999999988743
No 171
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=37.01 E-value=61 Score=34.89 Aligned_cols=32 Identities=25% Similarity=0.568 Sum_probs=28.0
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
|||++. ||.|-+-..|+..|...||+|+++=-
T Consensus 28 lrI~it----------GgaGFIgSHLvdkLm~egh~VIa~Dn 59 (350)
T KOG1429|consen 28 LRILIT----------GGAGFIGSHLVDKLMTEGHEVIALDN 59 (350)
T ss_pred cEEEEe----------cCcchHHHHHHHHHHhcCCeEEEEec
Confidence 799885 78888999999999999999999853
No 172
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=36.92 E-value=44 Score=35.02 Aligned_cols=37 Identities=35% Similarity=0.478 Sum_probs=27.9
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~ 322 (632)
||||+.... ..+ ..-+..|+++|. .+++|+||+|...
T Consensus 1 mrILlTNDD-Gi~------a~Gi~aL~~al~-~~~dV~VVAP~~~ 37 (252)
T COG0496 1 MRILLTNDD-GIH------APGIRALARALR-EGADVTVVAPDRE 37 (252)
T ss_pred CeEEEecCC-ccC------CHHHHHHHHHHh-hCCCEEEEccCCC
Confidence 899998875 221 233777888888 8999999999754
No 173
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=36.78 E-value=59 Score=30.21 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=29.6
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVV 317 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VV 317 (632)
|||+++.. +.+|-...++..|++.|...|++|.++
T Consensus 1 M~i~IiY~-----S~tGnTe~iA~~ia~~l~~~g~~v~~~ 35 (140)
T TIGR01754 1 MRILLAYL-----SLSGNTEEVAFMIQDYLQKDGHEVDIL 35 (140)
T ss_pred CeEEEEEE-----CCCChHHHHHHHHHHHHhhCCeeEEec
Confidence 78888754 368999999999999999999998743
No 174
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=36.34 E-value=60 Score=33.84 Aligned_cols=36 Identities=36% Similarity=0.607 Sum_probs=28.2
Q ss_pred cEEEEEecccCCCCCCCcH--HHHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGL--GDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGl--g~~v~~LakaLakrGheV~VVtP 319 (632)
|||+.|.. + .||+ .+...+|+.+|+++|.+|.+|=.
T Consensus 1 M~~iai~s---~---kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 1 MKVIAIVS---P---KGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred CcEEEEec---C---CCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 77777764 2 4554 57889999999999999999943
No 175
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=36.05 E-value=45 Score=30.71 Aligned_cols=36 Identities=25% Similarity=0.195 Sum_probs=25.9
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|||++.... ++....+.++.+.|.+.|++|.|+...
T Consensus 1 k~i~l~vtG-------s~~~~~~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTG-------SIAAYKAPDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-S-------SGGGGGHHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEEC-------HHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 688888652 233344889999999999999998743
No 176
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=36.02 E-value=77 Score=29.14 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=31.7
Q ss_pred CcEEEEEecccCCCCCCCcHHHHH--HHHHHHHHHCCCeEEEEccC
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVA--GALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v--~~LakaLakrGheV~VVtP~ 320 (632)
+|||+.|+. .| .|-+..|+ ..|.++-.++||++.|=+-.
T Consensus 2 ~mkivaVta--cp---~GiAht~lAAeaL~kAA~~~G~~i~VE~qg 42 (114)
T PRK10427 2 MAYLVAVTA--CV---SGVAHTYMAAERLEKLCQLEKWGVKIETQG 42 (114)
T ss_pred CceEEEEee--CC---CcHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 389999976 34 68888887 77888889999999988754
No 177
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=35.81 E-value=45 Score=34.63 Aligned_cols=32 Identities=38% Similarity=0.699 Sum_probs=23.9
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|||+++. .|.+| ..++..|++.||+|+++..+
T Consensus 1 m~I~IiG--------~G~~G---~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILG--------AGAIG---GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEEC--------CCHHH---HHHHHHHHhCCCeEEEEECC
Confidence 7888873 34444 56677888899999999863
No 178
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=35.76 E-value=43 Score=35.24 Aligned_cols=31 Identities=29% Similarity=0.548 Sum_probs=23.1
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
|||+++ ||.|-.-..|++.|.++||+|+++.
T Consensus 1 m~vlVt----------GatG~iG~~l~~~L~~~g~~V~~~~ 31 (338)
T PRK10675 1 MRVLVT----------GGSGYIGSHTCVQLLQNGHDVVILD 31 (338)
T ss_pred CeEEEE----------CCCChHHHHHHHHHHHCCCeEEEEe
Confidence 677765 4445555667788999999999885
No 179
>PRK08309 short chain dehydrogenase; Provisional
Probab=35.28 E-value=60 Score=31.87 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=19.5
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
||.| ....+++.|+++|++|.+++.
T Consensus 7 GGtG-~gg~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 7 GGTG-MLKRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred CcCH-HHHHHHHHHHHCcCEEEEEEC
Confidence 5544 346699999999999998863
No 180
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=34.93 E-value=48 Score=34.85 Aligned_cols=33 Identities=33% Similarity=0.487 Sum_probs=24.4
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
||||++|. +|.+-..++..|++.||+|+++...
T Consensus 1 mmkI~iiG-----------~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLG-----------AGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEEC-----------CCHHHHHHHHHHHhCCCEEEEEECC
Confidence 48988883 2445556677888999999988753
No 181
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=34.38 E-value=53 Score=34.74 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=27.2
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~ 322 (632)
||||+....=. -+.-+..|.++|.+.| +|+|++|...
T Consensus 1 M~ILlTNDDGi-------~apGi~aL~~al~~~g-~V~VvAP~~e 37 (266)
T PRK13934 1 MKILVTNDDGV-------HSPGLRLLYEFVSPLG-EVDVVAPETP 37 (266)
T ss_pred CeEEEEcCCCC-------CCHHHHHHHHHHHhCC-cEEEEccCCC
Confidence 89999887521 1234777888888888 8999999754
No 182
>PRK05246 glutathione synthetase; Provisional
Probab=34.07 E-value=38 Score=36.12 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=32.0
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCC
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y 321 (632)
.|||+++.. |+.....-.....+|+++..++||+|.+++|..
T Consensus 1 ~~~~~~~~~---~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~d 42 (316)
T PRK05246 1 MMKVAFQMD---PIESINIKKDSTFAMMLEAQRRGHELFYYEPDD 42 (316)
T ss_pred CceEEEEeC---CHHHCCCCCChHHHHHHHHHHcCCEEEEEehhh
Confidence 389999975 443333344566789999999999999999863
No 183
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=33.56 E-value=55 Score=34.21 Aligned_cols=38 Identities=29% Similarity=0.277 Sum_probs=28.0
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~ 323 (632)
||||+....=. -..-+..|.++|.+. |+|.|++|....
T Consensus 1 M~ILlTNDDGi-------~a~Gi~aL~~~l~~~-~~V~VvAP~~~q 38 (250)
T PRK00346 1 MRILLTNDDGI-------HAPGIRALAEALREL-ADVTVVAPDRER 38 (250)
T ss_pred CeEEEECCCCC-------CChhHHHHHHHHHhC-CCEEEEeCCCCC
Confidence 89999887511 123477888888888 699999997543
No 184
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=33.01 E-value=54 Score=33.95 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=26.7
Q ss_pred cEEEEEecccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg--~~v~~LakaLakrGheV~VVtP 319 (632)
|||+-|+ . -||+| +.+.+|+.+|+++|.+|.||=.
T Consensus 1 m~~iav~-~------KGGVGKTT~~~nLA~~La~~G~rVLlID~ 37 (274)
T PRK13235 1 MRKVAIY-G------KGGIGKSTTTQNTVAGLAEMGKKVMVVGC 37 (274)
T ss_pred CCEEEEe-C------CCCccHHHHHHHHHHHHHHCCCcEEEEec
Confidence 5665554 2 47766 4678999999999999999943
No 185
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.75 E-value=67 Score=34.02 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=27.1
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
.|||.++ |+|.+-..+++.|.+.||+|.++...
T Consensus 4 ~m~I~ii-----------G~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAIL-----------GAGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEE-----------CccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5899888 44677788899999999999988654
No 186
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=32.67 E-value=61 Score=32.67 Aligned_cols=35 Identities=34% Similarity=0.663 Sum_probs=26.2
Q ss_pred EEEEEecccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEcc
Q 006770 279 NVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg--~~v~~LakaLakrGheV~VVtP 319 (632)
||+.|+.. .||+| +.+.+|+.+|+++|.+|.+|=.
T Consensus 2 ~ii~v~s~------kGGvGKTt~a~~lA~~la~~g~~vlliD~ 38 (261)
T TIGR01968 2 RVIVITSG------KGGVGKTTTTANLGTALARLGKKVVLIDA 38 (261)
T ss_pred eEEEEecC------CCCccHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 45556542 46655 4889999999999999999943
No 187
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=32.67 E-value=1.1e+02 Score=30.41 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=29.4
Q ss_pred CCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEccC
Q 006770 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALAR-RGHRVMVVAPH 320 (632)
Q Consensus 276 ~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLak-rGheV~VVtP~ 320 (632)
..|||+.|+.. ...-|-.+.+.+||.+|++ +|++|.+|=.+
T Consensus 33 ~~~~vi~v~s~----kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 33 KNNNLIMVTSS----LPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCCeEEEEECC----CCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 34788777752 1234566778899999997 69999999543
No 188
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=32.65 E-value=74 Score=31.92 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=28.2
Q ss_pred cEEEEEecccCCCCCCCcH--HHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGL--GDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGl--g~~v~~LakaLakrGheV~VVtP~ 320 (632)
|||+.|+.. -||+ .+.+.+|+.+|+++|++|.+|=.+
T Consensus 1 m~iI~v~s~------KGGvGKTt~a~nla~~la~~g~~VlliD~D 39 (246)
T TIGR03371 1 MKVIAIVGV------KGGVGKTTLTANLASALKLLGEPVLAIDLD 39 (246)
T ss_pred CcEEEEEeC------CCCccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 777777552 3555 567889999999999999999544
No 189
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=32.62 E-value=48 Score=34.55 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=23.0
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
|||+++. .|.+| ..++..|++.||+|++++.
T Consensus 1 mkI~IiG--------~G~iG---~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVG--------AGAVG---GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEEC--------CCHHH---HHHHHHHHHCCCceEEEec
Confidence 7888883 34444 4566678889999999986
No 190
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.08 E-value=57 Score=34.76 Aligned_cols=33 Identities=30% Similarity=0.307 Sum_probs=25.7
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
.|||++| |+|.+-..++..|++.||+|+++..+
T Consensus 4 ~m~I~iI-----------G~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVL-----------GAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEE-----------CcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4899888 33456667788899999999999764
No 191
>PLN02206 UDP-glucuronate decarboxylase
Probab=31.85 E-value=67 Score=36.11 Aligned_cols=33 Identities=36% Similarity=0.558 Sum_probs=27.5
Q ss_pred CCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 276 ~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
+.|||++. ||.|-+=..|++.|.++|++|.++.
T Consensus 118 ~~~kILVT----------GatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 118 KGLRVVVT----------GGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred CCCEEEEE----------CcccHHHHHHHHHHHHCcCEEEEEe
Confidence 45898764 7777888889999999999999875
No 192
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=31.63 E-value=85 Score=31.73 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=22.3
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
|+|+++.. +|++| ..|++.|.++||+|++++.
T Consensus 18 ~~ilItGa-------sG~iG---~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 18 KTVFVAGA-------TGRTG---KRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred CeEEEECC-------CcHHH---HHHHHHHHhCCCEEEEEec
Confidence 67877642 35544 5567778889999988763
No 193
>PRK10818 cell division inhibitor MinD; Provisional
Probab=31.54 E-value=91 Score=32.01 Aligned_cols=39 Identities=23% Similarity=0.508 Sum_probs=29.7
Q ss_pred CcEEEEEecccCCCCCCCcH--HHHHHHHHHHHHHCCCeEEEEccCC
Q 006770 277 VMNVILVAAECGPWSKTGGL--GDVAGALPKALARRGHRVMVVAPHY 321 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGl--g~~v~~LakaLakrGheV~VVtP~y 321 (632)
||||+.|+.. .||+ .+.+.+|+.+|+++|.+|.+|=.+.
T Consensus 1 m~kviav~s~------KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 1 MARIIVVTSG------KGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred CceEEEEEeC------CCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3688888753 3554 5678899999999999999995443
No 194
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=31.36 E-value=58 Score=33.28 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=24.0
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEccCCC
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVAPHYG 322 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVtP~y~ 322 (632)
+|.|..=..|+..|++.||+|+|...+.+
T Consensus 7 ~GtGniG~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 7 IGTGNIGSALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred eccChHHHHHHHHHHhCCCeEEEecCCCh
Confidence 56677778999999999999999975543
No 195
>PLN02572 UDP-sulfoquinovose synthase
Probab=30.98 E-value=84 Score=35.26 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=19.4
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVt 318 (632)
||.|-.-..|++.|.++|++|.++-
T Consensus 54 GatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 54 GGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 5555555677889999999999874
No 196
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=30.86 E-value=26 Score=32.83 Aligned_cols=35 Identities=40% Similarity=0.566 Sum_probs=25.1
Q ss_pred CCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 275 ~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
...|||.+|.. |++-..|+++|.+.||+|.-+..+
T Consensus 8 ~~~l~I~iIGa-----------GrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 8 AARLKIGIIGA-----------GRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp ----EEEEECT-----------SCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CCccEEEEECC-----------CHHHHHHHHHHHHCCCeEEEEEeC
Confidence 34599999954 455678999999999999888643
No 197
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=30.86 E-value=60 Score=32.10 Aligned_cols=32 Identities=34% Similarity=0.412 Sum_probs=22.9
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
||+++|+ ||.+-.-..+++.|+++|++|.++.
T Consensus 1 ~~~~lIt---------Ga~g~iG~~l~~~l~~~g~~v~~~~ 32 (247)
T PRK09730 1 MAIALVT---------GGSRGIGRATALLLAQEGYTVAVNY 32 (247)
T ss_pred CCEEEEe---------CCCchHHHHHHHHHHHCCCEEEEEe
Confidence 5666664 4445555668889999999998764
No 198
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=30.63 E-value=1.1e+02 Score=31.68 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=29.5
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
.||+.|+.. . ..-|-.+.+.+|+.+|++.|++|.+|=
T Consensus 103 ~~vi~vts~-~---~g~Gktt~a~nLA~~la~~g~~VllID 139 (274)
T TIGR03029 103 RKALAVVSA-K---SGEGCSYIAANLAIVFSQLGEKTLLID 139 (274)
T ss_pred CeEEEEECC-C---CCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 477777653 1 346788889999999999999999994
No 199
>PRK07454 short chain dehydrogenase; Provisional
Probab=30.58 E-value=63 Score=32.03 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=24.3
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
.||.++|+ ||.+..-..+++.|.++|++|.++..
T Consensus 5 ~~k~vlIt---------G~sg~iG~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 5 SMPRALIT---------GASSGIGKATALAFAKAGWDLALVAR 38 (241)
T ss_pred CCCEEEEe---------CCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 36766664 44445556678889999999988864
No 200
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=30.25 E-value=7.9e+02 Score=27.24 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=31.4
Q ss_pred HHHHHhCCCCCCCCcEE-EEEc-CCcc-ccCHHHHHHHHhhccC--CCcEEEEEecCh
Q 006770 570 ALQREFGLPVRDDVPVI-GFIG-RLDH-QKGVDLIAEAIPWMMG--QDVQLSHVGHWQ 622 (632)
Q Consensus 570 ~Lrk~lGL~~~~d~pvI-lfVG-RL~~-qKGvdlLLeA~~~L~~--~dvqLVI~G~G~ 622 (632)
..++.+ ++ ++.++| ++.| |-.+ .+-+..+++++..+.+ .+++|++.....
T Consensus 174 ~~~~~~-l~--~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~ 228 (373)
T PF02684_consen 174 EAREKL-LD--PDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPE 228 (373)
T ss_pred HHHHhc-CC--CCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCH
Confidence 345556 66 356655 4444 3333 3445788999998876 389988876543
No 201
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=30.22 E-value=68 Score=33.36 Aligned_cols=38 Identities=29% Similarity=0.589 Sum_probs=30.5
Q ss_pred EEEEEecccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEccCCC
Q 006770 279 NVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVVAPHYG 322 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg--~~v~~LakaLakrGheV~VVtP~y~ 322 (632)
+|+.|++ .-||+| +...+|+.+|+++|++|.+|=.+.+
T Consensus 3 ~iIVvTS------GKGGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 3 RIIVVTS------GKGGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred eEEEEec------CCCCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 6777776 357776 5678999999999999999976654
No 202
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=30.02 E-value=1.1e+02 Score=28.25 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=23.1
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 292 KTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 292 ~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
...|....+.+||..|+++|++|.+|-..
T Consensus 10 ~g~G~t~~a~~lA~~la~~~~~Vllid~~ 38 (157)
T PF13614_consen 10 GGVGKTTLALNLAAALARKGKKVLLIDFD 38 (157)
T ss_dssp TTSSHHHHHHHHHHHHHHTTT-EEEEE--
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 45788899999999999999998888644
No 203
>PRK05723 flavodoxin; Provisional
Probab=29.88 E-value=82 Score=30.18 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=30.4
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
|||.++.. +.+|-.+.++..|++.|.++|++|.++.
T Consensus 1 ~~i~I~yg-----S~tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 1 MKVAILSG-----SVYGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred CeEEEEEE-----cCchHHHHHHHHHHHHHHHCCCceeecC
Confidence 77877744 3689999999999999999999998764
No 204
>PRK06849 hypothetical protein; Provisional
Probab=29.78 E-value=73 Score=34.81 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=27.3
Q ss_pred CCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 276 ~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
++|+||++.. -......++++|.+.||+|+++...
T Consensus 3 ~~~~VLI~G~----------~~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGA----------RAPAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCC----------CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689988743 2335788999999999999999654
No 205
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=29.43 E-value=59 Score=34.64 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=24.0
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
+|||++|. .| .+-..++..|++.||+|+++..
T Consensus 2 ~mkI~IiG--------~G---~mG~~~A~~L~~~G~~V~~~~r 33 (341)
T PRK08229 2 MARICVLG--------AG---SIGCYLGGRLAAAGADVTLIGR 33 (341)
T ss_pred CceEEEEC--------CC---HHHHHHHHHHHhcCCcEEEEec
Confidence 48998883 24 4445667788999999999975
No 206
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=29.07 E-value=67 Score=35.81 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=25.8
Q ss_pred CCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 276 ~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
..|||++| |+|.+-..++..|++.||+|+++-.
T Consensus 2 ~~~kI~VI-----------GlG~~G~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 2 SFETISVI-----------GLGYIGLPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred CccEEEEE-----------CcchhhHHHHHHHHhCCCEEEEEeC
Confidence 45888887 3455566788899999999999864
No 207
>PRK06924 short chain dehydrogenase; Provisional
Probab=28.78 E-value=65 Score=32.13 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=18.9
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
||.+-.-..+++.|+++|++|.+++.
T Consensus 8 GasggiG~~ia~~l~~~g~~V~~~~r 33 (251)
T PRK06924 8 GTSQGLGEAIANQLLEKGTHVISISR 33 (251)
T ss_pred cCCchHHHHHHHHHHhcCCEEEEEeC
Confidence 34444455668899999999988764
No 208
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=28.75 E-value=96 Score=31.61 Aligned_cols=35 Identities=37% Similarity=0.582 Sum_probs=26.9
Q ss_pred cEEEEEecccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg--~~v~~LakaLakrGheV~VVtP 319 (632)
||++-|+ . -||+| +.+.+||.+|+++|++|.+|=.
T Consensus 1 m~~iav~-~------KGGvGKTT~~~nLA~~La~~G~kVlliD~ 37 (270)
T cd02040 1 MRQIAIY-G------KGGIGKSTTTQNLSAALAEMGKKVMIVGC 37 (270)
T ss_pred CcEEEEE-e------CCcCCHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 6766665 2 36654 6789999999999999999943
No 209
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=28.74 E-value=60 Score=32.58 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEccCC
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVAPHY 321 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVtP~y 321 (632)
||.|.+-..+.++|.++||+|.+++.+.
T Consensus 7 GatG~~G~~~~~~L~~~~~~v~~~~r~~ 34 (275)
T COG0702 7 GATGFVGGAVVRELLARGHEVRAAVRNP 34 (275)
T ss_pred ecccchHHHHHHHHHhCCCEEEEEEeCH
Confidence 6666666778889999999999999763
No 210
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=28.29 E-value=99 Score=32.72 Aligned_cols=35 Identities=31% Similarity=0.606 Sum_probs=27.8
Q ss_pred cEEEEEecccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg--~~v~~LakaLakrGheV~VVtP~ 320 (632)
|||++.. -||+| +.+.+|+.+|+++|++|.+|=.+
T Consensus 1 m~ia~~g--------KGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYG--------KGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEEC--------CCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 7877764 37765 66889999999999999999543
No 211
>PRK04155 chaperone protein HchA; Provisional
Probab=27.97 E-value=2.1e+02 Score=30.58 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=32.5
Q ss_pred CCCCCCCCCcEEEEEecccCCCC-CCCc---HHHHHHHH---HHHHHHCCCeEEEEccC
Q 006770 269 PPPLAGANVMNVILVAAECGPWS-KTGG---LGDVAGAL---PKALARRGHRVMVVAPH 320 (632)
Q Consensus 269 ~~~~~~~~~MKIL~It~e~~P~~-~~GG---lg~~v~~L---akaLakrGheV~VVtP~ 320 (632)
|.|-.|. +|||||.+...-+. ..|- .|....++ ...|.+.|++|+++++.
T Consensus 43 ~~~~~~~--kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~ 99 (287)
T PRK04155 43 PKPYRGG--KKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLS 99 (287)
T ss_pred CCcCCCC--CeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5677776 49999999764331 1122 23333333 34688899999999985
No 212
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=27.81 E-value=64 Score=35.45 Aligned_cols=35 Identities=26% Similarity=0.501 Sum_probs=29.3
Q ss_pred CCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 276 ~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
..++|++| ||+|.+-..++.+|.+.||+|+++...
T Consensus 97 ~~~~I~Ii----------GG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIV----------GGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEE----------cCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 44788876 777888889999999999999999753
No 213
>PRK05993 short chain dehydrogenase; Provisional
Probab=27.76 E-value=78 Score=32.47 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=23.6
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
+||+++|+- ..||+| ..+++.|+++|++|.++..
T Consensus 3 ~~k~vlItG------asggiG---~~la~~l~~~G~~Vi~~~r 36 (277)
T PRK05993 3 MKRSILITG------CSSGIG---AYCARALQSDGWRVFATCR 36 (277)
T ss_pred CCCEEEEeC------CCcHHH---HHHHHHHHHCCCEEEEEEC
Confidence 356666643 246666 4567889999999988864
No 214
>PRK08655 prephenate dehydrogenase; Provisional
Probab=27.67 E-value=68 Score=36.10 Aligned_cols=33 Identities=24% Similarity=0.547 Sum_probs=25.4
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|||+++ ||.|..-..++++|.+.||+|+++..+
T Consensus 1 MkI~II----------GG~G~mG~slA~~L~~~G~~V~v~~r~ 33 (437)
T PRK08655 1 MKISII----------GGTGGLGKWFARFLKEKGFEVIVTGRD 33 (437)
T ss_pred CEEEEE----------ecCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 677776 555566677888899999999988753
No 215
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=27.54 E-value=87 Score=33.44 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=25.0
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
.|||+++ ||.|-.-..|+++|.++|++|.++..
T Consensus 10 ~~~vLVt----------G~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 10 TGTYCVT----------GATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred CCEEEEE----------CCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 3787775 55566666778899999999998753
No 216
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=27.39 E-value=1.2e+02 Score=31.42 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=31.9
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|+|+.|+.. +..|-.+.+..|++.|.++|++|.++-+.
T Consensus 1 m~vi~ivG~-----~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-----KDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-----CCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 788888652 36788999999999999999999999653
No 217
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=27.26 E-value=80 Score=33.54 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=25.9
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
.|||+++. .|++|.+... .|.+.|++|++++.+
T Consensus 2 ~m~I~IiG--------aGaiG~~~a~---~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILG--------AGSLGSLWAC---RLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEEC--------CCHHHHHHHH---HHHhCCCCeEEEEec
Confidence 48999984 5888877654 577889999999864
No 218
>PRK05693 short chain dehydrogenase; Provisional
Probab=27.24 E-value=70 Score=32.60 Aligned_cols=33 Identities=33% Similarity=0.523 Sum_probs=23.2
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
||+++|+- -+||+|. .+++.|.++|++|.+++.
T Consensus 1 mk~vlItG------asggiG~---~la~~l~~~G~~V~~~~r 33 (274)
T PRK05693 1 MPVVLITG------CSSGIGR---ALADAFKAAGYEVWATAR 33 (274)
T ss_pred CCEEEEec------CCChHHH---HHHHHHHHCCCEEEEEeC
Confidence 56666653 2466664 567788899999988764
No 219
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=27.19 E-value=96 Score=33.65 Aligned_cols=37 Identities=27% Similarity=0.610 Sum_probs=30.6
Q ss_pred CcEEEEEecccCCCCCCCcHHH--HHHHHHHHHHHCCCeEEEEccC
Q 006770 277 VMNVILVAAECGPWSKTGGLGD--VAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~--~v~~LakaLakrGheV~VVtP~ 320 (632)
+|||++++- -||+|. ...+++-.|++.|.+|.+|+.+
T Consensus 1 ~~riv~f~G-------KGGVGKTT~aaA~A~~lA~~g~kvLlvStD 39 (322)
T COG0003 1 MTRIVFFTG-------KGGVGKTTIAAATAVKLAESGKKVLLVSTD 39 (322)
T ss_pred CcEEEEEec-------CCcccHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 378888864 699998 8888899999999888888643
No 220
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=26.95 E-value=84 Score=32.23 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEccCC
Q 006770 293 TGGLGDVAGALPKALARRGHRVMVVAPHY 321 (632)
Q Consensus 293 ~GGlg~~v~~LakaLakrGheV~VVtP~y 321 (632)
+||.|-+=..|++.|.++||+|.++....
T Consensus 6 tG~tGfiG~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 6 TGGAGFIGSHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred EcCcccHHHHHHHHHHhCCCeEEEEeCCC
Confidence 35666666899999999999999998643
No 221
>PLN02208 glycosyltransferase family protein
Probab=26.86 E-value=1.1e+02 Score=34.40 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=29.8
Q ss_pred CCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 276 ~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
+.++|+++. |. .-|==.-+.+|++.|+.+|++|+++++.
T Consensus 3 ~~~hvv~~P-----~p-aqGHi~P~l~LAk~La~~G~~VT~vtt~ 41 (442)
T PLN02208 3 PKFHAFMFP-----WF-AFGHMIPFLHLANKLAEKGHRVTFLLPK 41 (442)
T ss_pred CCCEEEEec-----Cc-cccHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 446888874 32 3455566889999999999999999854
No 222
>CHL00175 minD septum-site determining protein; Validated
Probab=26.84 E-value=1.3e+02 Score=31.15 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=28.4
Q ss_pred cEEEEEecccCCCCCCCcH--HHHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGL--GDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGl--g~~v~~LakaLakrGheV~VVtP 319 (632)
+||+.|+.. .||+ .+.+.+|+.+|+++|++|.+|=.
T Consensus 15 ~~vi~v~s~------KGGvGKTt~a~nLA~~La~~g~~vlliD~ 52 (281)
T CHL00175 15 SRIIVITSG------KGGVGKTTTTANLGMSIARLGYRVALIDA 52 (281)
T ss_pred ceEEEEEcC------CCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 578888763 3555 47789999999999999999843
No 223
>PLN02686 cinnamoyl-CoA reductase
Probab=26.80 E-value=1e+02 Score=33.39 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=21.0
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
||.|-.-..|++.|.++||+|.++..
T Consensus 60 GatGfIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 60 GGVSFLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEeC
Confidence 66666777788999999999988653
No 224
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=26.63 E-value=84 Score=30.74 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=29.9
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
|||+++.. +.+|-...++..+++.|.. |++|.++-
T Consensus 1 MkilIvY~-----S~~G~T~~iA~~Ia~~l~~-g~~v~~~~ 35 (177)
T PRK11104 1 MKTLILYS-----SRDGQTRKIASYIASELKE-GIQCDVVN 35 (177)
T ss_pred CcEEEEEE-----CCCChHHHHHHHHHHHhCC-CCeEEEEE
Confidence 78888865 3689999999999999988 99998874
No 225
>PRK05568 flavodoxin; Provisional
Probab=26.35 E-value=1.4e+02 Score=27.40 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=29.6
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
+||+++.. +.+|....++..+++.+.+.|++|.++-.
T Consensus 2 ~~~~IvY~-----S~~GnT~~~a~~i~~~~~~~g~~v~~~~~ 38 (142)
T PRK05568 2 KKINIIYW-----SGTGNTEAMANLIAEGAKENGAEVKLLNV 38 (142)
T ss_pred CeEEEEEE-----CCCchHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 35666543 35799999999999999999999998843
No 226
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=26.32 E-value=75 Score=33.95 Aligned_cols=32 Identities=28% Similarity=0.549 Sum_probs=26.7
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|||.+| |+|.+-.-+++.|.+.||+|+|+-..
T Consensus 1 ~kIafI-----------GLG~MG~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFI-----------GLGIMGSPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEE-----------cCchhhHHHHHHHHHCCCEEEEEeCC
Confidence 567776 67788889999999999999999643
No 227
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=26.31 E-value=9.1e+02 Score=26.63 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=23.5
Q ss_pred CCcEE-EEEcCCc--cccCHHHHHHHHhhccC-CCcEEEEE
Q 006770 582 DVPVI-GFIGRLD--HQKGVDLIAEAIPWMMG-QDVQLSHV 618 (632)
Q Consensus 582 d~pvI-lfVGRL~--~qKGvdlLLeA~~~L~~-~dvqLVI~ 618 (632)
+.++| ++.|--. ..+.+..+++|+..+.+ .++++++.
T Consensus 204 ~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~ 244 (396)
T TIGR03492 204 GRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAA 244 (396)
T ss_pred CCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEE
Confidence 33444 4444332 34677899999999864 37777665
No 228
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=26.27 E-value=1.2e+02 Score=31.64 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=21.7
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
||.|-.-..|++.|.++||+|.++...
T Consensus 11 GatGfIG~~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 11 GASGYIASWLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred CChHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 666666677899999999999887643
No 229
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=26.19 E-value=1.2e+02 Score=30.98 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=28.8
Q ss_pred cEEEEEecccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg--~~v~~LakaLakrGheV~VVtP~ 320 (632)
|||+.|+.. -||+| +....|+.+|+++|.+|.+|=.+
T Consensus 1 M~iI~v~n~------KGGvGKTT~a~nLA~~la~~G~~VlliD~D 39 (231)
T PRK13849 1 MKLLTFCSF------KGGAGKTTALMGLCAALASDGKRVALFEAD 39 (231)
T ss_pred CeEEEEECC------CCCccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 778777653 57776 45778899999999999999543
No 230
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=25.88 E-value=1.2e+02 Score=29.78 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=28.0
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCC-CeEEEEc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRG-HRVMVVA 318 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrG-heV~VVt 318 (632)
||||+|... |....+-.......+.+++.+.| ++|+++=
T Consensus 1 mkiLvI~as--p~~~~S~s~~l~~~~~~~~~~~~~~~v~~~d 40 (199)
T PF02525_consen 1 MKILVINAS--PRPEGSFSRALADAFLEGLQEAGPHEVEIRD 40 (199)
T ss_dssp EEEEEEE----SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEEEEcC--CCCccCHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 899999875 53112334667788889999999 9999984
No 231
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=25.81 E-value=1.5e+02 Score=27.85 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=30.0
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCC-CeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRG-HRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrG-heV~VVtP~ 320 (632)
||+.++..+ +||. -=-...+.+++.++.+.| ++|.|+-..
T Consensus 1 m~~~Ivvt~-ppYg--~q~a~~A~~fA~all~~gh~~v~iFly~ 41 (126)
T COG1553 1 MKYTIVVTG-PPYG--TESAFSALRFAEALLEQGHELVRLFLYQ 41 (126)
T ss_pred CeEEEEEec-CCCc--cHHHHHHHHHHHHHHHcCCeEEEEEEee
Confidence 788888776 7762 134677899999999997 588888643
No 232
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=25.58 E-value=62 Score=30.65 Aligned_cols=28 Identities=43% Similarity=0.563 Sum_probs=23.8
Q ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 293 TGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 293 ~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
.||.|..-..++++|.++||+|++++.+
T Consensus 4 ~GatG~vG~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 4 FGATGFVGRALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp ETTTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 4666777788999999999999999865
No 233
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=25.50 E-value=88 Score=32.64 Aligned_cols=32 Identities=38% Similarity=0.541 Sum_probs=25.1
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|||.+| |+|.+-..|+.+|.+.||+|.++.++
T Consensus 1 m~I~II-----------G~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 1 MKIGIV-----------GLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred CeEEEE-----------eecHHHHHHHHHHHHCCCEEEEEECC
Confidence 677776 35567778899999999999988754
No 234
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.45 E-value=1.1e+02 Score=29.95 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=18.7
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
||.+-.-..|++.|.++||+|++++..
T Consensus 13 Gasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 13 GAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 334444556778899999999776543
No 235
>PRK09004 FMN-binding protein MioC; Provisional
Probab=25.41 E-value=1.2e+02 Score=28.72 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=28.8
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
||.++.. +.+|-.+.++..|++.+.++|++|.++.
T Consensus 3 ~i~I~yg-----S~tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 3 DITLISG-----STLGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred eEEEEEE-----cCchHHHHHHHHHHHHHHHcCCceEEec
Confidence 5665533 3689999999999999999999999874
No 236
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=25.35 E-value=71 Score=32.97 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=31.4
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~ 322 (632)
|..++++. +| ..|-.++..+|+++|.+.+|+|..+.-+|.
T Consensus 1 mpLiIlTG--yP---gsGKTtfakeLak~L~~~i~~vi~l~kdy~ 40 (261)
T COG4088 1 MPLIILTG--YP---GSGKTTFAKELAKELRQEIWRVIHLEKDYL 40 (261)
T ss_pred CceEEEec--CC---CCCchHHHHHHHHHHHHhhhhccccchhhh
Confidence 44455554 45 578899999999999999999999986553
No 237
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=25.31 E-value=97 Score=32.75 Aligned_cols=31 Identities=32% Similarity=0.577 Sum_probs=25.1
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
|||.+| |+|.+-..|++.|.+.||+|.++-.
T Consensus 1 M~Ig~I-----------GlG~mG~~la~~L~~~g~~V~~~dr 31 (298)
T TIGR00872 1 MQLGLI-----------GLGRMGANIVRRLAKRGHDCVGYDH 31 (298)
T ss_pred CEEEEE-----------cchHHHHHHHHHHHHCCCEEEEEEC
Confidence 677776 4677788899999999999988643
No 238
>PRK07023 short chain dehydrogenase; Provisional
Probab=25.22 E-value=83 Score=31.30 Aligned_cols=33 Identities=33% Similarity=0.483 Sum_probs=22.5
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
+|+|+++.. +||+|. .+++.|.+.|++|.+++.
T Consensus 1 ~~~vlItGa-------sggiG~---~ia~~l~~~G~~v~~~~r 33 (243)
T PRK07023 1 AVRAIVTGH-------SRGLGA---ALAEQLLQPGIAVLGVAR 33 (243)
T ss_pred CceEEEecC-------CcchHH---HHHHHHHhCCCEEEEEec
Confidence 366665532 456554 567788999999988864
No 239
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=25.12 E-value=86 Score=33.34 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=23.8
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|||+++. .|.+-..|+..|++.||+|.++..+
T Consensus 1 MkI~IiG-----------aGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILG-----------AGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEEC-----------cCHHHHHHHHHHHHCCCeEEEEecC
Confidence 7887773 3455566778899999999988753
No 240
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=25.07 E-value=68 Score=31.71 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=21.2
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
|||..+... -+-.-+|..|++.||+|+.+=.
T Consensus 1 M~I~ViGlG-----------yvGl~~A~~lA~~G~~V~g~D~ 31 (185)
T PF03721_consen 1 MKIAVIGLG-----------YVGLPLAAALAEKGHQVIGVDI 31 (185)
T ss_dssp -EEEEE--S-----------TTHHHHHHHHHHTTSEEEEE-S
T ss_pred CEEEEECCC-----------cchHHHHHHHHhCCCEEEEEeC
Confidence 888888543 3345678899999999999853
No 241
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.06 E-value=88 Score=31.18 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=19.6
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
||.+-.-..|++.|+++|++|.++..
T Consensus 9 G~sg~iG~~la~~L~~~g~~vi~~~r 34 (256)
T PRK12745 9 GGRRGIGLGIARALAAAGFDLAINDR 34 (256)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEec
Confidence 45555566778889999999988763
No 242
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=25.06 E-value=66 Score=30.95 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEccCC
Q 006770 297 GDVAGALPKALARRGHRVMVVAPHY 321 (632)
Q Consensus 297 g~~v~~LakaLakrGheV~VVtP~y 321 (632)
|.+..+.++.|.+.|++|+||.|..
T Consensus 22 G~va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 22 GKIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred CHHHHHHHHHHHhCCCEEEEEcCcc
Confidence 5788899999999999999997653
No 243
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=24.98 E-value=63 Score=34.53 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=27.3
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEccCCC
Q 006770 292 KTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (632)
Q Consensus 292 ~~GGlg~~v~~LakaLakrGheV~VVtP~y~ 322 (632)
.+||.|..=..|...|.+.||+|+|++.+..
T Consensus 3 iTGgTGlIG~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 3 ITGGTGLIGRALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred EeccccchhHHHHHHHHhCCCeEEEEEcCCc
Confidence 3699999999999999999999999996543
No 244
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=24.83 E-value=80 Score=32.71 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=19.9
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
||.|-.-..|+++|.++|++|.++...
T Consensus 7 G~~G~iG~~l~~~L~~~g~~V~~~~r~ 33 (328)
T TIGR03466 7 GATGFVGSAVVRLLLEQGEEVRVLVRP 33 (328)
T ss_pred CCccchhHHHHHHHHHCCCEEEEEEec
Confidence 444455556788899999999988743
No 245
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=24.62 E-value=1.5e+02 Score=35.35 Aligned_cols=48 Identities=27% Similarity=0.241 Sum_probs=32.4
Q ss_pred CCCCCCCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCC
Q 006770 270 PPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (632)
Q Consensus 270 ~~~~~~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~ 323 (632)
|--+...++||+.|+++ |- -....++.....|+++||+|+|++...|.
T Consensus 362 ~~~~~~~~~rvLv~spH--PD----Devi~~GGTlarl~~~G~~V~vv~~TsG~ 409 (652)
T PRK02122 362 PERALPYPKRVIIFSPH--PD----DDVISMGGTFRRLVEQGHDVHVAYQTSGN 409 (652)
T ss_pred CcccccCCceEEEEEeC--CC----chHhhhHHHHHHHHHCCCcEEEEEecCCc
Confidence 33344456899999874 53 33444555567889999999998765454
No 246
>PRK07102 short chain dehydrogenase; Provisional
Probab=24.43 E-value=90 Score=31.03 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=19.6
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
||.+-.-..+++.|.++|++|.++...
T Consensus 8 Gas~giG~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 8 GATSDIARACARRYAAAGARLYLAARD 34 (243)
T ss_pred cCCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence 344444467788999999999888643
No 247
>PLN02427 UDP-apiose/xylose synthase
Probab=24.42 E-value=1e+02 Score=33.42 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=26.6
Q ss_pred CCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEcc
Q 006770 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARR-GHRVMVVAP 319 (632)
Q Consensus 276 ~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakr-GheV~VVtP 319 (632)
.+|||+++ ||.|-.-..|++.|.++ ||+|.++..
T Consensus 13 ~~~~VlVT----------GgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 13 KPLTICMI----------GAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred cCcEEEEE----------CCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 45897764 77777778889999998 599988863
No 248
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=24.38 E-value=59 Score=35.21 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.7
Q ss_pred HHHHHHHHHHCCCeEEEEccC
Q 006770 300 AGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 300 v~~LakaLakrGheV~VVtP~ 320 (632)
+..|+++|.++||+|+++++.
T Consensus 12 ~l~lA~~L~~~Gh~V~~~~~~ 32 (392)
T TIGR01426 12 TLGVVEELVARGHRVTYATTE 32 (392)
T ss_pred cHHHHHHHHhCCCeEEEEeCH
Confidence 567899999999999999974
No 249
>PRK07308 flavodoxin; Validated
Probab=24.35 E-value=1.4e+02 Score=27.78 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=24.1
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 292 KTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 292 ~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
.+|..+.++..+++.|.+.|++|.+.-
T Consensus 11 ~tGnTe~iA~~ia~~l~~~g~~~~~~~ 37 (146)
T PRK07308 11 MTGNTEEIADIVADKLRELGHDVDVDE 37 (146)
T ss_pred CCchHHHHHHHHHHHHHhCCCceEEEe
Confidence 479999999999999999999988763
No 250
>PRK05569 flavodoxin; Provisional
Probab=24.11 E-value=1.6e+02 Score=26.98 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=29.6
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
+||+++.. +.+|....++..+++.+.+.|++|.++-.
T Consensus 2 ~ki~iiY~-----S~tGnT~~iA~~i~~~~~~~g~~v~~~~~ 38 (141)
T PRK05569 2 KKVSIIYW-----SCGGNVEVLANTIADGAKEAGAEVTIKHV 38 (141)
T ss_pred CeEEEEEE-----CCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 47777653 24799999999999999999999887753
No 251
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=24.07 E-value=1.5e+02 Score=30.51 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=26.9
Q ss_pred cEEEEEecccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg--~~v~~LakaLakrGheV~VVtP 319 (632)
+||+-|+ . -||+| +.+.+||.+|+++|++|.||=.
T Consensus 2 ~~iIav~-~------KGGVGKTT~~~nLA~~la~~G~kVLliD~ 38 (270)
T PRK13185 2 ALVLAVY-G------KGGIGKSTTSSNLSAAFAKLGKKVLQIGC 38 (270)
T ss_pred ceEEEEE-C------CCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4777775 2 35554 6679999999999999999943
No 252
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=24.04 E-value=1.5e+02 Score=29.43 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=30.9
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEcc
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALAR-RGHRVMVVAP 319 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLak-rGheV~VVtP 319 (632)
+|||++|... | .|-...++..+++.+.+ .|++|.++..
T Consensus 1 M~kilIvy~S--~---~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 1 MAKVLVLYYS--M---YGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CCeEEEEEcC--C---CCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 4799998653 3 47788999999999988 9999999864
No 253
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=23.82 E-value=1.4e+02 Score=32.76 Aligned_cols=39 Identities=36% Similarity=0.489 Sum_probs=29.7
Q ss_pred CCcEEEEEecccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEccC
Q 006770 276 NVMNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 276 ~~MKIL~It~e~~P~~~~GGlg--~~v~~LakaLakrGheV~VVtP~ 320 (632)
..|+|+.|+.. .||+| +.+.+||.+|+++|++|.+|=.+
T Consensus 102 ~~~~vI~v~n~------KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 102 EHLQVIAVTNF------KGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred CCceEEEEEcc------CCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 45788887763 46655 56788999999999999999433
No 254
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=23.71 E-value=1.3e+02 Score=30.78 Aligned_cols=35 Identities=29% Similarity=0.538 Sum_probs=26.6
Q ss_pred cEEEEEecccCCCCCCCcH--HHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGL--GDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGl--g~~v~~LakaLakrGheV~VVtP~ 320 (632)
|+|++.. -||+ .+.+.+|+.+|+++|++|.+|=.+
T Consensus 1 ~~i~v~g--------KGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYG--------KGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEec--------CCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 6776662 3555 466789999999999999999543
No 255
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=23.65 E-value=3.5e+02 Score=26.69 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=24.9
Q ss_pred HHHHHhhcCCeEEEechhHHHHHHHhhcCCccccccccCCCcEEEeeC
Q 006770 485 IFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVN 532 (632)
Q Consensus 485 i~r~~l~~AD~VItVS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpN 532 (632)
+.+..+..-|.|.+.|+..++.+.+ .| . +++++.+.-|
T Consensus 142 ~~r~~l~~f~~i~aqs~~da~r~~~--lG--~------~~~~v~v~Gn 179 (186)
T PF04413_consen 142 LFRPLLSRFDRILAQSEADAERFRK--LG--A------PPERVHVTGN 179 (186)
T ss_dssp HHHHHGGG-SEEEESSHHHHHHHHT--TT---------S--SEEE---
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHH--cC--C------CcceEEEeCc
Confidence 5677788999999999999988875 23 2 5678887655
No 256
>PRK08177 short chain dehydrogenase; Provisional
Probab=23.65 E-value=89 Score=30.78 Aligned_cols=25 Identities=32% Similarity=0.431 Sum_probs=18.5
Q ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 293 TGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 293 ~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
+||+|. .+++.|+++|++|.++...
T Consensus 10 sg~iG~---~la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 10 SRGLGL---GLVDRLLERGWQVTATVRG 34 (225)
T ss_pred CchHHH---HHHHHHHhCCCEEEEEeCC
Confidence 455554 5678899999999988744
No 257
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=23.28 E-value=1e+02 Score=30.80 Aligned_cols=32 Identities=28% Similarity=0.666 Sum_probs=22.4
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
|+|+++.. +||+|. .+++.|.+.|++|.++..
T Consensus 1 ~~vlItGa-------sg~iG~---~la~~l~~~G~~V~~~~r 32 (248)
T PRK10538 1 MIVLVTGA-------TAGFGE---CITRRFIQQGHKVIATGR 32 (248)
T ss_pred CEEEEECC-------CchHHH---HHHHHHHHCCCEEEEEEC
Confidence 66666532 466655 467889999999988864
No 258
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=23.10 E-value=1.5e+02 Score=29.39 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=26.3
Q ss_pred cEEEEEecccCCCCCCCcH-HHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGL-GDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGl-g~~v~~LakaLakrGheV~VVtP~ 320 (632)
+||++..+ |+. ...+.++.+.|.+.|++|.|+...
T Consensus 2 k~Ill~vt--------Gsiaa~~~~~li~~L~~~g~~V~vv~T~ 37 (182)
T PRK07313 2 KNILLAVS--------GSIAAYKAADLTSQLTKRGYQVTVLMTK 37 (182)
T ss_pred CEEEEEEe--------ChHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 56777653 554 445689999999999999999754
No 259
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=23.04 E-value=1.3e+02 Score=29.47 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=18.4
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
||.+-.-..|++.|.++|++|.++...
T Consensus 12 Gasg~iG~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 12 GASRGIGRAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 333344456777889999998777643
No 260
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=22.96 E-value=1.1e+02 Score=32.74 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=23.2
Q ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 293 TGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 293 ~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
+||.|-.-..|++.|.++|++|+++..
T Consensus 21 tGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 21 TGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred ECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 378888888899999999999988864
No 261
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=22.90 E-value=84 Score=26.04 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHHHCCCeEEEEccCC
Q 006770 295 GLGDVAGALPKALARRGHRVMVVAPHY 321 (632)
Q Consensus 295 Glg~~v~~LakaLakrGheV~VVtP~y 321 (632)
|.|....++|..|+++|.+|+++....
T Consensus 6 GgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 335778899999999999999998653
No 262
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=22.82 E-value=1.2e+02 Score=32.07 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=25.6
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHC---CCeEEEEccCCCC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARR---GHRVMVVAPHYGN 323 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakr---GheV~VVtP~y~~ 323 (632)
||||+....=. ..-| +..|.++|.+. |++|+|++|....
T Consensus 1 M~ILlTNDDGI---~a~G----l~aL~~~l~~~~~~~~~V~VVAP~~eq 42 (261)
T PRK13931 1 MRILITNDDGI---NAPG----LEVLEQIATELAGPDGEVWTVAPAFEQ 42 (261)
T ss_pred CeEEEEcCCCC---CCHh----HHHHHHHHHHhccCCCeEEEEeCCCCC
Confidence 89999887511 1123 55666666664 4799999997543
No 263
>PRK08267 short chain dehydrogenase; Provisional
Probab=22.69 E-value=1e+02 Score=31.00 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=19.3
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
||.+-.-..+++.|.++|++|.++..
T Consensus 8 Gasg~iG~~la~~l~~~G~~V~~~~r 33 (260)
T PRK08267 8 GAASGIGRATALLFAAEGWRVGAYDI 33 (260)
T ss_pred CCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 44444556678889999999998864
No 264
>PRK05920 aromatic acid decarboxylase; Validated
Probab=22.65 E-value=1.5e+02 Score=30.04 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=27.1
Q ss_pred CcEEEEEecccCCCCCCCcH-HHHHHHHHHHHHHCCCeEEEEccC
Q 006770 277 VMNVILVAAECGPWSKTGGL-GDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGl-g~~v~~LakaLakrGheV~VVtP~ 320 (632)
++||++-.+ ||. ......+.+.|.+.|++|.|++..
T Consensus 3 ~krIllgIT--------Gsiaa~ka~~lvr~L~~~g~~V~vi~T~ 39 (204)
T PRK05920 3 MKRIVLAIT--------GASGAIYGVRLLECLLAADYEVHLVISK 39 (204)
T ss_pred CCEEEEEEe--------CHHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 467777643 443 356788999999999999999854
No 265
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=22.60 E-value=1.5e+02 Score=30.44 Aligned_cols=34 Identities=29% Similarity=0.537 Sum_probs=26.6
Q ss_pred cEEEEEecccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg--~~v~~LakaLakrGheV~VVtP 319 (632)
|+|++. . -||+| +.+.+|+.+|+++|++|.||=.
T Consensus 1 ~~i~~~-g-------KGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVY-G-------KGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CEEEEE-c-------CCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 676666 2 37765 6678999999999999999943
No 266
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=22.52 E-value=2e+02 Score=25.02 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=28.5
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCC---CeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRG---HRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrG---heV~VVtP~ 320 (632)
|+|+++... .|+ ..........++.++..+| ++|.|+...
T Consensus 1 k~v~~i~~~-~p~--~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g 43 (122)
T PF02635_consen 1 KKVFFIVTS-GPY--DDERAKIALRLANAAAAMGDYGHDVVVFFHG 43 (122)
T ss_dssp EEEEEEE-S--TT--TBSHHHHHHHHHHHHHHTTHTTSEEEEEE-G
T ss_pred CEEEEEecC-CCC--CCHHHHHHHHHHHHHHHcCCCCCcEEEEEEc
Confidence 688888764 453 2233788888899999999 999999743
No 267
>PLN02712 arogenate dehydrogenase
Probab=22.50 E-value=2.4e+02 Score=33.63 Aligned_cols=35 Identities=20% Similarity=0.459 Sum_probs=26.5
Q ss_pred CCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 275 ~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
..+|+|++|. +|.+-..|+++|.+.|++|.++...
T Consensus 50 ~~~~kIgIIG-----------~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 50 TTQLKIAIIG-----------FGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred CCCCEEEEEc-----------cCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3458999983 4456667889999999999887653
No 268
>PRK06101 short chain dehydrogenase; Provisional
Probab=22.44 E-value=1e+02 Score=30.68 Aligned_cols=33 Identities=27% Similarity=0.554 Sum_probs=22.5
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
|+.++|+- .+||+| ..+++.|.++|++|.++..
T Consensus 1 ~~~vlItG------as~giG---~~la~~L~~~G~~V~~~~r 33 (240)
T PRK06101 1 MTAVLITG------ATSGIG---KQLALDYAKQGWQVIACGR 33 (240)
T ss_pred CcEEEEEc------CCcHHH---HHHHHHHHhCCCEEEEEEC
Confidence 45555543 245555 5678889999999988764
No 269
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=22.38 E-value=1.6e+02 Score=27.34 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=27.1
Q ss_pred EEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeE-EEEcc
Q 006770 280 VILVAAECGPWSKTGGLGDVAGALPKALARRGHRV-MVVAP 319 (632)
Q Consensus 280 IL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV-~VVtP 319 (632)
++++... +|| .+-.+....++++++.+.||+| .|+-.
T Consensus 2 ~~iv~~~-~P~--~~~~~~~al~~A~aa~~~gh~v~~vFf~ 39 (127)
T TIGR03012 2 YTLLVTG-PPY--GTQAASSAYQFAQALLAKGHEIVRVFFY 39 (127)
T ss_pred EEEEEeC-CCC--CcHHHHHHHHHHHHHHHCCCcEEEEEEe
Confidence 4454443 675 4557889999999999999995 77753
No 270
>PRK09134 short chain dehydrogenase; Provisional
Probab=22.31 E-value=1.6e+02 Score=29.55 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=18.0
Q ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 293 TGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 293 ~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
.||+|. .+++.|.++|++|.++..
T Consensus 18 s~giG~---~la~~l~~~g~~v~~~~~ 41 (258)
T PRK09134 18 ARRIGR---AIALDLAAHGFDVAVHYN 41 (258)
T ss_pred CcHHHH---HHHHHHHHCCCEEEEEeC
Confidence 466664 677889999999987753
No 271
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=22.21 E-value=1.4e+02 Score=32.85 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=32.2
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
+|+++++++. ...-|.......|.++|.++|.+|-++.|=
T Consensus 1 m~~~l~l~p~----~~~~G~tsi~lgLl~~l~~k~~kva~~kPI 40 (354)
T COG0857 1 MSRTLLLIPT----ETGVGKTSISLGLLRALEQKGLKVAYFKPI 40 (354)
T ss_pred CcceEEEecc----CCCccHHHHHHHHHHHHHHcCceeEEEecc
Confidence 5899999764 233456667788999999999999999985
No 272
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=22.11 E-value=1.3e+02 Score=31.00 Aligned_cols=34 Identities=29% Similarity=0.583 Sum_probs=26.3
Q ss_pred cEEEEEecccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEc
Q 006770 278 MNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg--~~v~~LakaLakrGheV~VVt 318 (632)
|||+-|+ . -||+| +.+.+|+.+|+++|.+|.+|=
T Consensus 1 ~~~iav~-g------KGGVGKTT~a~nLA~~La~~G~rVllvD 36 (273)
T PRK13232 1 MRQIAIY-G------KGGIGKSTTTQNLTAALSTMGNKILLVG 36 (273)
T ss_pred CCEEEEE-C------CCCCcHHHHHHHHHHHHHhhCCCeEEEe
Confidence 5665554 2 36665 567899999999999999994
No 273
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=22.06 E-value=1.2e+02 Score=34.78 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=29.4
Q ss_pred CCCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 274 GANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 274 ~~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
..+.++|.+| |+|.+=..|++.|++.||+|.|.-.
T Consensus 3 ~~~~~~IG~I-----------GLG~MG~~mA~nL~~~G~~V~V~NR 37 (493)
T PLN02350 3 SAALSRIGLA-----------GLAVMGQNLALNIAEKGFPISVYNR 37 (493)
T ss_pred CCCCCCEEEE-----------eeHHHHHHHHHHHHhCCCeEEEECC
Confidence 4566777777 7889999999999999999999853
No 274
>PRK12827 short chain dehydrogenase; Provisional
Probab=22.05 E-value=1.4e+02 Score=29.47 Aligned_cols=33 Identities=33% Similarity=0.549 Sum_probs=23.8
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
.|+|+++.. .||+| ..|++.|.++|++|.++..
T Consensus 6 ~~~ilItGa-------sg~iG---~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 6 SRRVLITGG-------SGGLG---RAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCEEEEECC-------CChHH---HHHHHHHHHCCCeEEEEcC
Confidence 467766532 46665 5778899999999988764
No 275
>PRK06953 short chain dehydrogenase; Provisional
Probab=22.00 E-value=90 Score=30.69 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=18.7
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
||.+-.-..+++.|.+.|++|.++..
T Consensus 8 G~sg~iG~~la~~L~~~G~~v~~~~r 33 (222)
T PRK06953 8 GASRGIGREFVRQYRADGWRVIATAR 33 (222)
T ss_pred cCCCchhHHHHHHHHhCCCEEEEEEC
Confidence 44444556677788899999988864
No 276
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=21.85 E-value=1.7e+02 Score=32.68 Aligned_cols=36 Identities=36% Similarity=0.500 Sum_probs=28.7
Q ss_pred CcEEEEEecccCCCCCCCcHH--HHHHHHHHHHHHCCCeEEEEc
Q 006770 277 VMNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg--~~v~~LakaLakrGheV~VVt 318 (632)
.|+|+.|+.. -||+| +.+.+|+.+|+++|++|.+|=
T Consensus 120 ~~~vIav~n~------KGGvGKTTta~nLA~~LA~~G~rVLlID 157 (405)
T PRK13869 120 HLQVIAVTNF------KGGSGKTTTSAHLAQYLALQGYRVLAVD 157 (405)
T ss_pred CceEEEEEcC------CCCCCHHHHHHHHHHHHHhcCCceEEEc
Confidence 5788887763 47765 567899999999999999994
No 277
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=21.66 E-value=73 Score=35.82 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=36.1
Q ss_pred EEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 279 KIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
+|++++...||| ..||+..-+.+|.++|-+.-..|..|++.
T Consensus 1 ~v~l~~egtyp~-~~ggvs~w~~~~i~~~p~~~f~~~~~~~~ 41 (475)
T cd03813 1 DVCLVLEGTYPY-VRGGVSSWVHQLITGLPEHTFAVVFIGAD 41 (475)
T ss_pred CeEEEEecCCCC-cCCchhHHHHHHHhhCCCceEEEEEEecC
Confidence 589999999999 68999999999999998887788888754
No 278
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=21.58 E-value=1.4e+02 Score=28.70 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=29.4
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCC
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y 321 (632)
++||+++.. +-++++..+...+++.|.+|.+++|..
T Consensus 2 gl~i~~vGD---------~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 2 GLKIAYVGD---------GHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TEEEEEESS---------TTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCEEEEECC---------CCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 468888752 225899999999999999999999864
No 279
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=21.55 E-value=1e+02 Score=30.64 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=21.9
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
||.++|+- ..||+| ..+++.|+++|++|.++.
T Consensus 2 ~k~ilItG------as~giG---~~la~~l~~~g~~v~~~~ 33 (248)
T PRK06947 2 RKVVLITG------ASRGIG---RATAVLAAARGWSVGINY 33 (248)
T ss_pred CcEEEEeC------CCCcHH---HHHHHHHHHCCCEEEEEe
Confidence 56666643 145555 567888999999987764
No 280
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=21.55 E-value=1.3e+02 Score=33.12 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=24.7
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
.|||+++ ||.|..-..+++.|.++||+|.+++..
T Consensus 60 ~~kVLVt----------GatG~IG~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 60 DVTVLVV----------GATGYIGKFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred CCEEEEE----------CCCcHHHHHHHHHHHHCCCEEEEEEec
Confidence 4777765 455555566778889999999988743
No 281
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=21.54 E-value=1.2e+02 Score=31.32 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=32.5
Q ss_pred CCCCCCCC-CCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCC
Q 006770 267 AKPPPLAG-ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (632)
Q Consensus 267 ~~~~~~~~-~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~ 322 (632)
+++-|+-= -+.++|+.| || |.++.+-++.|.+.|.+|+||+|...
T Consensus 14 ~~~~pi~l~~~~~~VLVV----------GG-G~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 14 NKYMFISLLSNKIKVLII----------GG-GKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred CCEeeeEEECCCCEEEEE----------CC-CHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 55555543 234678877 33 46778888999999999999998754
No 282
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=21.49 E-value=1.3e+02 Score=31.54 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=27.5
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|||++++.+..= .....|.+++.++||+|.++-+.
T Consensus 1 m~~~i~~~~~s~--------~s~~~~~~a~~~~g~~v~~i~~~ 35 (300)
T PRK10446 1 MKIAILSRDGTL--------YSCKRLREAAIQRGHLVEILDPL 35 (300)
T ss_pred CeEEEEecCCcc--------hhHHHHHHHHHHcCCeEEEEehH
Confidence 899999866322 24568899999999999999765
No 283
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=21.41 E-value=1.6e+02 Score=29.99 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=18.9
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 292 KTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 292 ~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
.+|++| ..|+++|.++|++|++++.
T Consensus 24 SSG~iG---~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 24 STGQLG---KIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred cchHHH---HHHHHHHHhCCCEEEEEEC
Confidence 345555 5677889999999999973
No 284
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=21.37 E-value=1.3e+02 Score=31.79 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=25.9
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
|+|++| |+|..-..++..|++.||+|+++-+.
T Consensus 3 ~~V~VI-----------G~G~mG~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 3 GSVAII-----------GAGLIGRAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred cEEEEE-----------CccHHHHHHHHHHHHCCCeeEEEeCC
Confidence 677776 35677788999999999999999754
No 285
>PRK00170 azoreductase; Reviewed
Probab=21.36 E-value=1.8e+02 Score=28.31 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=27.7
Q ss_pred CcEEEEEecccCCCCCCCcHH-HHHHHHHHHHHHC--CCeEEEEcc
Q 006770 277 VMNVILVAAECGPWSKTGGLG-DVAGALPKALARR--GHRVMVVAP 319 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg-~~v~~LakaLakr--GheV~VVtP 319 (632)
+|||++|... |- ..+|.. ..+..+.+.|.+. ||+|+++-.
T Consensus 1 Mmkil~i~gS--pr-~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL 43 (201)
T PRK00170 1 MSKVLVIKSS--IL-GDYSQSMQLGDAFIEAYKEAHPDDEVTVRDL 43 (201)
T ss_pred CCeEEEEecC--CC-CCCcHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 5999999874 42 232544 4555667778887 999998854
No 286
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=21.29 E-value=1.5e+02 Score=33.75 Aligned_cols=36 Identities=31% Similarity=0.315 Sum_probs=31.4
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
|||+-|+.. +..|-.+.+..|...|.++|++|-+|=
T Consensus 1 MkVi~IvG~-----sgSGKTTLiekLI~~L~~rG~rVavIK 36 (452)
T PRK14495 1 MRVYGIIGW-----KDAGKTGLVERLVAAIAARGFSVSTVK 36 (452)
T ss_pred CcEEEEEec-----CCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 788888752 568899999999999999999999985
No 287
>PRK06753 hypothetical protein; Provisional
Probab=21.08 E-value=1e+02 Score=32.97 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=21.7
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
|+|++|. || ..=..+|.+|++.|++|+|+=
T Consensus 1 ~~V~IvG---------gG--~aGl~~A~~L~~~g~~v~v~E 30 (373)
T PRK06753 1 MKIAIIG---------AG--IGGLTAAALLQEQGHEVKVFE 30 (373)
T ss_pred CEEEEEC---------CC--HHHHHHHHHHHhCCCcEEEEe
Confidence 7888873 33 333455678999999999984
No 288
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=21.03 E-value=1.6e+02 Score=31.06 Aligned_cols=25 Identities=44% Similarity=0.771 Sum_probs=21.1
Q ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 293 TGGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 293 ~GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
++|+| .++++.|+++||+|.+++.+
T Consensus 15 SsGIG---~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 15 SSGIG---AELAKQLARRGYNLILVARR 39 (265)
T ss_pred CchHH---HHHHHHHHHCCCEEEEEeCc
Confidence 57777 46789999999999999864
No 289
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=20.94 E-value=1.2e+02 Score=30.02 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=20.1
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
||.+-.-..|++.|.++|++|.+++..
T Consensus 8 Ga~g~lG~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 8 GAASGIGLAIALALAAAGANVVVNDLG 34 (255)
T ss_pred CCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 444444567888999999998888754
No 290
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=20.91 E-value=1.1e+02 Score=32.23 Aligned_cols=30 Identities=33% Similarity=0.578 Sum_probs=24.7
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
|||.+| |+|.+-..+++.|.+.||+|.|+-
T Consensus 1 m~Ig~I-----------GlG~MG~~ma~~L~~~G~~v~v~~ 30 (292)
T PRK15059 1 MKLGFI-----------GLGIMGTPMAINLARAGHQLHVTT 30 (292)
T ss_pred CeEEEE-----------ccCHHHHHHHHHHHHCCCeEEEEe
Confidence 677776 567778899999999999998874
No 291
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=20.85 E-value=1.5e+02 Score=31.81 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=31.0
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
|||++++.. .+ ...+|==.....|+++|.++|..+..++-
T Consensus 1 M~V~i~~Dg-g~-~iGmGHV~R~l~LA~~l~k~~~~~~fl~k 40 (318)
T COG3980 1 MKVLIRCDG-GL-EIGMGHVMRTLTLARELEKRGFACLFLTK 40 (318)
T ss_pred CcEEEEecC-Cc-ccCcchhhhHHHHHHHHHhcCceEEEecc
Confidence 899999985 33 24455556678899999999988888873
No 292
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=20.82 E-value=1.8e+02 Score=29.06 Aligned_cols=28 Identities=32% Similarity=0.606 Sum_probs=22.0
Q ss_pred CCcHH--HHHHHHHHHHHHCCCeEEEEccC
Q 006770 293 TGGLG--DVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 293 ~GGlg--~~v~~LakaLakrGheV~VVtP~ 320 (632)
.||+| +.+.+||.+|+++|++|.+|=.+
T Consensus 9 KGGvGKTt~a~~LA~~la~~g~~VlliD~D 38 (251)
T TIGR01969 9 KGGTGKTTITANLGVALAKLGKKVLALDAD 38 (251)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35554 66778999999999999999533
No 293
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=20.80 E-value=1.4e+02 Score=31.58 Aligned_cols=31 Identities=32% Similarity=0.620 Sum_probs=25.3
Q ss_pred cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEcc
Q 006770 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAP 319 (632)
Q Consensus 278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP 319 (632)
|||.+| |+|.+-..+++.|.+.||+|.|+-+
T Consensus 1 m~Ig~I-----------GlG~MG~~mA~~L~~~g~~v~v~dr 31 (301)
T PRK09599 1 MQLGMI-----------GLGRMGGNMARRLLRGGHEVVGYDR 31 (301)
T ss_pred CEEEEE-----------cccHHHHHHHHHHHHCCCeEEEEEC
Confidence 677776 5678888899999999999988754
No 294
>PRK00211 sulfur relay protein TusC; Validated
Probab=20.27 E-value=1.9e+02 Score=26.55 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=30.3
Q ss_pred CcEEEEEecccCCCCCCCc-HHHHHHHHHHHHHHCCCeEEEEccCCC
Q 006770 277 VMNVILVAAECGPWSKTGG-LGDVAGALPKALARRGHRVMVVAPHYG 322 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GG-lg~~v~~LakaLakrGheV~VVtP~y~ 322 (632)
+|||+++... .|| |. .+.-..+++-+++..+++|.|+-...+
T Consensus 1 M~ki~~i~~~-~Py---g~~~~~eaLd~ala~~a~~~~v~vff~~Dg 43 (119)
T PRK00211 1 MKRIAFVFRQ-APH---GTASGREGLDALLATSAFTEDIGVFFIDDG 43 (119)
T ss_pred CceEEEEecC-CCC---CCHHHHHHHHHHHHHhcccCCeeEEEEhhh
Confidence 4678888775 786 43 556666667788888899999875433
No 295
>PRK07236 hypothetical protein; Provisional
Probab=20.20 E-value=1.3e+02 Score=32.60 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=24.6
Q ss_pred CCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 275 ~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
+..|+|++|. || ..-..++.+|++.|++|+|+=
T Consensus 4 ~~~~~ViIVG---------aG--~aGl~~A~~L~~~G~~v~v~E 36 (386)
T PRK07236 4 MSGPRAVVIG---------GS--LGGLFAALLLRRAGWDVDVFE 36 (386)
T ss_pred CCCCeEEEEC---------CC--HHHHHHHHHHHhCCCCEEEEe
Confidence 4557898883 33 444566778999999999995
No 296
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=20.11 E-value=1.3e+02 Score=29.62 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=20.2
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEccC
Q 006770 294 GGLGDVAGALPKALARRGHRVMVVAPH 320 (632)
Q Consensus 294 GGlg~~v~~LakaLakrGheV~VVtP~ 320 (632)
||.+-.-..+++.|.++|+.|.++...
T Consensus 9 G~s~~iG~~la~~l~~~g~~vi~~~r~ 35 (245)
T PRK12824 9 GAKRGIGSAIARELLNDGYRVIATYFS 35 (245)
T ss_pred CCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 555555667888999999998887643
No 297
>PRK04148 hypothetical protein; Provisional
Probab=20.07 E-value=1.2e+02 Score=28.81 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=21.4
Q ss_pred CcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEc
Q 006770 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (632)
Q Consensus 277 ~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVt 318 (632)
.|||+-|.. | .-.+++..|+++||+|+.+=
T Consensus 17 ~~kileIG~-----------G-fG~~vA~~L~~~G~~ViaID 46 (134)
T PRK04148 17 NKKIVELGI-----------G-FYFKVAKKLKESGFDVIVID 46 (134)
T ss_pred CCEEEEEEe-----------c-CCHHHHHHHHHCCCEEEEEE
Confidence 478988853 2 12346778889999999883
Done!