Query 006771
Match_columns 632
No_of_seqs 229 out of 688
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 08:31:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ziu_A MUS81 protein; helix-ha 100.0 1.7E-56 5.9E-61 469.8 23.9 263 358-631 9-305 (311)
2 2zix_A Crossover junction endo 100.0 7.9E-56 2.7E-60 464.3 -0.7 254 373-631 21-301 (307)
3 2bgw_A XPF endonuclease; hydro 100.0 8E-35 2.8E-39 290.8 20.5 205 375-629 7-214 (219)
4 1j23_A HEF nuclease, ATP-depen 100.0 3.1E-32 1.1E-36 255.9 14.8 130 376-525 4-135 (143)
5 2ziu_B Crossover junction endo 99.9 3.1E-27 1.1E-31 250.8 17.5 245 376-629 22-328 (341)
6 2kp7_A Crossover junction endo 99.8 4.3E-20 1.5E-24 159.0 7.7 77 11-91 6-86 (87)
7 4gfj_A Topoisomerase V; helix- 99.5 3.1E-16 1.1E-20 165.1 -6.7 160 405-594 320-497 (685)
8 3c1y_A DNA integrity scanning 98.5 3.9E-09 1.3E-13 112.4 -4.7 159 407-627 191-365 (377)
9 2fmp_A DNA polymerase beta; nu 96.9 0.0021 7.2E-08 67.8 8.9 77 13-91 5-81 (335)
10 2a1j_A DNA repair endonuclease 96.8 0.00063 2.2E-08 54.6 3.3 51 565-629 4-55 (63)
11 1z00_B DNA repair endonuclease 96.8 0.0012 4.1E-08 56.2 4.8 57 559-629 12-69 (84)
12 2ihm_A POL MU, DNA polymerase 96.6 0.0051 1.7E-07 65.6 9.1 73 17-92 14-86 (360)
13 1jms_A Terminal deoxynucleotid 96.5 0.0059 2E-07 65.5 9.3 73 17-92 33-105 (381)
14 2bcq_A DNA polymerase lambda; 96.5 0.0057 1.9E-07 64.6 8.7 73 16-91 9-81 (335)
15 1x2i_A HEF helicase/nuclease; 96.1 0.0096 3.3E-07 48.2 6.0 61 556-628 5-65 (75)
16 1z00_A DNA excision repair pro 95.1 0.028 9.7E-07 47.5 5.7 60 558-629 12-71 (89)
17 2a1j_B DNA excision repair pro 95.0 0.021 7.1E-07 48.7 4.4 62 556-629 23-84 (91)
18 1tbx_A ORF F-93, hypothetical 94.1 0.058 2E-06 45.7 5.1 72 123-221 8-82 (99)
19 2nrt_A Uvrabc system protein C 93.8 0.038 1.3E-06 54.9 3.8 54 562-629 165-219 (220)
20 1kft_A UVRC, excinuclease ABC 93.2 0.046 1.6E-06 45.0 2.9 53 564-628 23-75 (78)
21 1ixr_A Holliday junction DNA h 92.5 0.22 7.4E-06 48.4 6.9 59 559-627 67-125 (191)
22 2esh_A Conserved hypothetical 91.4 0.64 2.2E-05 41.0 8.3 75 124-221 14-95 (118)
23 3f8b_A Transcriptional regulat 90.5 0.48 1.6E-05 41.9 6.5 74 125-221 14-94 (116)
24 3c65_A Uvrabc system protein C 90.3 0.052 1.8E-06 54.2 0.0 55 562-629 170-224 (226)
25 3b0x_A DNA polymerase beta fam 90.3 0.29 1E-05 54.9 6.1 71 20-92 3-78 (575)
26 3oop_A LIN2960 protein; protei 90.2 0.31 1.1E-05 43.3 5.1 69 123-221 37-110 (143)
27 3nrv_A Putative transcriptiona 90.1 0.39 1.3E-05 42.9 5.7 71 121-221 38-113 (148)
28 3k0l_A Repressor protein; heli 90.0 0.59 2E-05 42.7 6.9 69 123-221 46-119 (162)
29 3fm5_A Transcriptional regulat 89.9 0.3 1E-05 43.9 4.7 70 123-221 39-113 (150)
30 1cuk_A RUVA protein; DNA repai 89.8 0.3 1E-05 47.9 5.0 28 559-587 68-95 (203)
31 3g3z_A NMB1585, transcriptiona 89.8 0.49 1.7E-05 42.1 6.0 68 124-221 32-104 (145)
32 3bja_A Transcriptional regulat 89.4 0.57 1.9E-05 41.1 6.1 69 123-221 33-106 (139)
33 3ech_A MEXR, multidrug resista 89.2 0.58 2E-05 41.6 6.0 69 123-221 37-110 (142)
34 3deu_A Transcriptional regulat 89.1 0.39 1.3E-05 44.4 5.0 72 121-221 51-127 (166)
35 2qvo_A Uncharacterized protein 88.7 0.3 1E-05 41.2 3.6 74 122-221 11-86 (95)
36 2dql_A PEX protein; circadian 88.6 0.34 1.2E-05 42.9 4.0 37 185-221 60-104 (115)
37 3boq_A Transcriptional regulat 88.6 0.61 2.1E-05 42.2 5.8 71 122-221 46-121 (160)
38 1xma_A Predicted transcription 88.6 0.42 1.4E-05 44.2 4.7 75 124-221 42-123 (145)
39 3jw4_A Transcriptional regulat 88.5 0.63 2.2E-05 41.6 5.8 71 123-221 41-116 (148)
40 2wte_A CSA3; antiviral protein 88.4 0.45 1.5E-05 47.8 5.2 71 120-220 149-219 (244)
41 3u1d_A Uncharacterized protein 88.0 0.31 1.1E-05 45.6 3.5 36 183-218 62-107 (151)
42 3df8_A Possible HXLR family tr 87.9 0.43 1.5E-05 41.7 4.1 38 184-221 60-98 (111)
43 3l7w_A Putative uncharacterize 87.7 0.32 1.1E-05 42.3 3.2 38 184-221 43-86 (108)
44 4esf_A PADR-like transcription 87.6 0.42 1.4E-05 42.5 3.9 37 185-221 48-91 (117)
45 3s2w_A Transcriptional regulat 87.4 0.63 2.2E-05 42.2 5.1 68 124-221 51-123 (159)
46 2pg4_A Uncharacterized protein 87.1 0.34 1.1E-05 40.8 2.9 39 183-221 46-88 (95)
47 3hhh_A Transcriptional regulat 86.3 0.47 1.6E-05 42.1 3.5 38 184-221 49-93 (116)
48 4esb_A Transcriptional regulat 86.2 0.5 1.7E-05 41.8 3.6 38 184-221 45-89 (115)
49 2bv6_A MGRA, HTH-type transcri 85.7 0.96 3.3E-05 40.0 5.3 68 124-221 38-110 (142)
50 3f3x_A Transcriptional regulat 85.2 0.61 2.1E-05 41.4 3.7 68 123-221 37-109 (144)
51 2frh_A SARA, staphylococcal ac 85.0 0.55 1.9E-05 41.5 3.3 71 123-221 37-112 (127)
52 1r7j_A Conserved hypothetical 84.9 0.79 2.7E-05 39.2 4.1 63 125-221 10-72 (95)
53 2co5_A Viral protein F93; vira 84.8 0.91 3.1E-05 39.3 4.5 38 184-221 47-86 (99)
54 2nyx_A Probable transcriptiona 84.6 0.99 3.4E-05 41.5 5.0 71 121-221 43-118 (168)
55 1xmk_A Double-stranded RNA-spe 84.5 0.51 1.8E-05 39.4 2.7 27 187-214 46-74 (79)
56 3kp7_A Transcriptional regulat 84.4 1.4 4.9E-05 39.4 5.9 67 124-221 39-112 (151)
57 3b73_A PHIH1 repressor-like pr 84.3 0.63 2.2E-05 41.2 3.4 32 183-215 45-76 (111)
58 2fbk_A Transcriptional regulat 84.2 1.9 6.5E-05 40.1 6.9 71 124-221 70-145 (181)
59 2w9m_A Polymerase X; SAXS, DNA 83.7 1.3 4.5E-05 49.7 6.5 73 17-92 7-82 (578)
60 2duy_A Competence protein come 82.9 1 3.6E-05 36.5 3.9 26 62-87 48-73 (75)
61 1jgs_A Multiple antibiotic res 82.9 0.97 3.3E-05 39.6 4.0 68 124-221 35-107 (138)
62 2duy_A Competence protein come 82.9 0.78 2.7E-05 37.2 3.1 52 560-629 22-73 (75)
63 2fsw_A PG_0823 protein; alpha- 82.7 0.6 2E-05 40.3 2.5 36 186-221 58-98 (107)
64 3eco_A MEPR; mutlidrug efflux 82.6 1 3.4E-05 39.7 4.0 70 124-221 32-106 (139)
65 2e1n_A PEX, period extender; c 82.5 0.54 1.9E-05 43.1 2.2 37 185-221 72-116 (138)
66 2x4h_A Hypothetical protein SS 82.2 1.1 3.7E-05 39.8 4.1 73 121-221 11-83 (139)
67 3hrs_A Metalloregulator SCAR; 81.9 1.6 5.5E-05 42.5 5.5 67 129-222 8-74 (214)
68 2hr3_A Probable transcriptiona 81.9 1.2 4E-05 39.6 4.2 69 124-221 36-109 (147)
69 3hsr_A HTH-type transcriptiona 81.9 0.92 3.2E-05 40.3 3.5 68 124-221 37-109 (140)
70 3cdh_A Transcriptional regulat 81.9 1.1 3.9E-05 40.2 4.1 68 124-221 44-116 (155)
71 2fa5_A Transcriptional regulat 81.8 0.99 3.4E-05 40.8 3.7 69 123-221 49-122 (162)
72 1z7u_A Hypothetical protein EF 81.7 0.9 3.1E-05 39.5 3.3 39 183-221 52-95 (112)
73 4hbl_A Transcriptional regulat 81.4 0.89 3E-05 40.8 3.2 68 124-221 42-114 (149)
74 2rdp_A Putative transcriptiona 81.3 1.1 3.9E-05 39.8 3.9 69 123-221 42-115 (150)
75 2fbh_A Transcriptional regulat 80.6 1.3 4.5E-05 39.0 4.0 69 124-221 38-111 (146)
76 3elk_A Putative transcriptiona 80.5 0.77 2.6E-05 40.7 2.4 37 184-220 50-93 (117)
77 3e6m_A MARR family transcripti 80.5 1.3 4.4E-05 40.3 4.0 68 124-221 54-126 (161)
78 2nnn_A Probable transcriptiona 80.4 0.95 3.2E-05 39.6 3.0 69 123-221 38-111 (140)
79 4fx0_A Probable transcriptiona 80.1 1.6 5.4E-05 39.7 4.5 72 124-221 34-110 (148)
80 3bro_A Transcriptional regulat 79.9 1 3.4E-05 39.6 3.0 70 124-221 35-109 (141)
81 2zfw_A PEX; five alpha-helices 79.8 0.5 1.7E-05 44.0 0.9 36 185-220 82-125 (148)
82 3ri2_A Transcriptional regulat 79.7 1.5 5.2E-05 39.3 4.1 39 183-221 54-98 (123)
83 1ub9_A Hypothetical protein PH 79.5 1.3 4.5E-05 36.7 3.5 67 125-221 18-89 (100)
84 2hzt_A Putative HTH-type trans 79.3 0.73 2.5E-05 39.7 1.8 39 183-221 44-87 (107)
85 3bj6_A Transcriptional regulat 79.2 1.7 5.8E-05 38.7 4.3 68 124-221 41-113 (152)
86 2gxg_A 146AA long hypothetical 79.2 1.6 5.4E-05 38.5 4.1 67 124-221 38-109 (146)
87 1lj9_A Transcriptional regulat 78.6 1.7 5.8E-05 38.3 4.1 68 124-221 30-102 (144)
88 4b8x_A SCO5413, possible MARR- 78.4 1.7 5.7E-05 39.4 4.0 70 124-221 36-110 (147)
89 3arc_U Photosystem II 12 kDa e 78.3 1.4 5E-05 38.1 3.4 33 60-92 45-77 (97)
90 3bdd_A Regulatory protein MARR 78.3 1.4 4.6E-05 38.7 3.3 66 123-218 31-102 (142)
91 1yyv_A Putative transcriptiona 78.1 1.3 4.6E-05 39.8 3.3 36 186-221 68-108 (131)
92 2eth_A Transcriptional regulat 77.9 1.7 5.7E-05 39.2 3.9 70 122-221 43-117 (154)
93 3u2r_A Regulatory protein MARR 77.9 1.6 5.3E-05 40.0 3.7 70 124-221 47-121 (168)
94 4aik_A Transcriptional regulat 77.6 1.8 6E-05 39.5 4.0 70 123-221 31-105 (151)
95 3cjn_A Transcriptional regulat 77.5 1.8 6.1E-05 39.2 4.0 69 123-221 52-125 (162)
96 2rkh_A Putative APHA-like tran 77.3 1.3 4.6E-05 42.4 3.2 74 124-221 14-94 (180)
97 1on2_A Transcriptional regulat 77.0 2.1 7.1E-05 38.2 4.2 38 183-221 38-75 (142)
98 1p4x_A Staphylococcal accessor 76.4 2.7 9.1E-05 42.1 5.2 73 121-221 32-109 (250)
99 2fbi_A Probable transcriptiona 76.2 1.9 6.6E-05 37.7 3.7 69 123-221 36-109 (142)
100 4a5n_A Uncharacterized HTH-typ 76.1 1.1 3.8E-05 40.7 2.1 35 187-221 60-99 (131)
101 2qww_A Transcriptional regulat 76.0 2.1 7.3E-05 38.2 4.0 68 124-221 42-116 (154)
102 2qq9_A Diphtheria toxin repres 76.0 2.1 7.3E-05 41.9 4.3 38 184-222 41-78 (226)
103 3nqo_A MARR-family transcripti 75.9 1.9 6.5E-05 40.6 3.8 73 121-221 39-116 (189)
104 3bpv_A Transcriptional regulat 75.7 1.3 4.5E-05 38.7 2.5 69 123-221 29-102 (138)
105 2f2e_A PA1607; transcription f 75.6 1.6 5.5E-05 39.9 3.1 39 183-221 53-95 (146)
106 1s5l_U Photosystem II 12 kDa e 75.5 0.66 2.3E-05 42.5 0.4 35 558-592 56-92 (134)
107 1exn_A 5'-exonuclease, 5'-nucl 74.9 3 0.0001 43.0 5.2 45 564-610 194-247 (290)
108 3u5c_K 40S ribosomal protein S 74.7 2 6.8E-05 37.7 3.2 36 184-219 42-79 (105)
109 1s3j_A YUSO protein; structura 74.2 2.5 8.7E-05 37.6 4.0 68 124-221 38-110 (155)
110 2a61_A Transcriptional regulat 74.1 2.4 8.1E-05 37.3 3.7 68 124-221 34-106 (145)
111 3tgn_A ADC operon repressor AD 73.8 2.1 7.2E-05 37.8 3.4 68 122-220 37-109 (146)
112 1x2i_A HEF helicase/nuclease; 73.7 3.4 0.00012 32.8 4.3 52 36-89 17-68 (75)
113 1z00_A DNA excision repair pro 73.1 2.6 9E-05 35.1 3.6 56 32-89 18-73 (89)
114 2a1j_B DNA excision repair pro 72.9 3.7 0.00013 34.4 4.5 53 35-89 34-86 (91)
115 2ztd_A Holliday junction ATP-d 72.7 8.1 0.00028 37.9 7.5 36 558-595 82-117 (212)
116 1yg2_A Gene activator APHA; vi 72.4 2.7 9.1E-05 39.6 3.8 76 123-221 2-84 (179)
117 2p8t_A Hypothetical protein PH 72.3 2.7 9.2E-05 41.1 3.9 39 183-223 46-84 (200)
118 1kft_A UVRC, excinuclease ABC 71.2 1.2 4.1E-05 36.4 1.0 53 34-88 25-77 (78)
119 2owo_A DNA ligase; protein-DNA 70.9 3.4 0.00012 47.3 4.9 49 569-629 516-564 (671)
120 1fx7_A Iron-dependent represso 70.4 3.5 0.00012 40.4 4.3 69 124-221 7-77 (230)
121 1wud_A ATP-dependent DNA helic 70.3 10 0.00035 31.8 6.6 68 18-91 10-87 (89)
122 2fxa_A Protease production reg 70.0 3.2 0.00011 39.9 3.9 70 123-222 48-122 (207)
123 1s5l_U Photosystem II 12 kDa e 69.4 4.9 0.00017 36.8 4.7 33 60-92 82-114 (134)
124 2rhf_A DNA helicase RECQ; HRDC 69.0 9.2 0.00031 31.0 5.9 59 19-82 3-62 (77)
125 3l9f_A Putative uncharacterize 68.5 4.2 0.00014 39.6 4.4 76 123-221 36-118 (204)
126 1z91_A Organic hydroperoxide r 66.9 1.4 4.9E-05 39.0 0.6 68 123-220 40-112 (147)
127 2pex_A Transcriptional regulat 66.8 1.8 6.2E-05 38.7 1.3 67 124-220 48-119 (153)
128 1dgs_A DNA ligase; AMP complex 66.4 4.3 0.00015 46.5 4.5 49 569-629 511-559 (667)
129 1okr_A MECI, methicillin resis 65.6 3.9 0.00013 35.3 3.2 76 120-221 7-85 (123)
130 3arc_U Photosystem II 12 kDa e 64.9 1.6 5.6E-05 37.8 0.5 28 565-592 26-55 (97)
131 2e1f_A Werner syndrome ATP-dep 64.6 12 0.00042 32.4 6.1 69 19-93 13-90 (103)
132 2oqg_A Possible transcriptiona 64.4 4.5 0.00015 34.4 3.3 38 183-220 50-89 (114)
133 2dgz_A Werner syndrome protein 63.9 16 0.00055 32.2 6.9 69 20-94 21-98 (113)
134 4glx_A DNA ligase; inhibitor, 63.3 5.6 0.00019 44.8 4.7 50 568-629 515-564 (586)
135 3c65_A Uvrabc system protein C 62.1 3.6 0.00012 40.9 2.5 63 13-89 133-195 (226)
136 2bgw_A XPF endonuclease; hydro 61.4 10 0.00034 36.8 5.6 52 36-89 165-216 (219)
137 3gfk_B DNA-directed RNA polyme 60.9 8 0.00027 32.2 4.0 44 50-93 25-74 (79)
138 3sgi_A DNA ligase; HET: DNA AM 60.8 1.8 6E-05 49.1 0.0 50 568-629 532-581 (615)
139 3l09_A Putative transcriptiona 60.7 7.4 0.00025 39.5 4.6 72 125-218 24-98 (266)
140 3cuo_A Uncharacterized HTH-typ 60.5 7.2 0.00025 32.0 3.8 64 126-219 27-93 (99)
141 1bja_A Transcription regulator 60.4 6 0.0002 34.1 3.3 67 122-220 15-82 (95)
142 2h09_A Transcriptional regulat 58.4 8.5 0.00029 34.6 4.2 38 183-221 70-107 (155)
143 2xzm_7 Plectin/S10 domain cont 57.1 4.8 0.00016 37.7 2.2 37 184-220 42-80 (162)
144 3f6v_A Possible transcriptiona 56.4 7.7 0.00026 35.7 3.6 38 183-220 87-126 (151)
145 3q8k_A Flap endonuclease 1; he 56.4 5.7 0.00019 41.7 3.0 29 569-597 236-264 (341)
146 3b0x_A DNA polymerase beta fam 55.8 17 0.00059 40.5 7.0 37 560-597 89-127 (575)
147 1ul1_X Flap endonuclease-1; pr 54.8 6.2 0.00021 41.9 3.0 34 564-597 225-264 (379)
148 2kv2_A Bloom syndrome protein; 53.6 31 0.0011 28.5 6.6 65 20-90 6-80 (85)
149 1rxw_A Flap structure-specific 53.1 8.8 0.0003 39.9 3.8 28 569-596 239-266 (336)
150 1sfx_A Conserved hypothetical 52.7 5.2 0.00018 33.1 1.6 67 125-221 22-92 (109)
151 3cta_A Riboflavin kinase; stru 51.4 9.5 0.00033 37.1 3.5 38 184-221 44-83 (230)
152 2i5h_A Hypothetical protein AF 51.0 11 0.00036 36.9 3.6 28 566-593 133-165 (205)
153 2izo_A FEN1, flap structure-sp 50.5 6.2 0.00021 41.3 2.1 29 569-597 238-266 (346)
154 1p4x_A Staphylococcal accessor 50.4 9.8 0.00034 38.0 3.5 36 186-221 193-233 (250)
155 2rrd_A BLM HRDC domain, HRDC d 50.2 30 0.001 29.8 6.0 65 20-90 21-95 (101)
156 3f6o_A Probable transcriptiona 49.2 11 0.00039 32.6 3.3 38 183-220 47-86 (118)
157 3k4g_A DNA-directed RNA polyme 47.8 11 0.00037 31.9 2.8 44 50-93 21-70 (86)
158 2nrt_A Uvrabc system protein C 44.6 17 0.00059 35.9 4.1 61 14-88 129-189 (220)
159 2edu_A Kinesin-like protein KI 44.2 25 0.00087 29.7 4.7 44 38-85 45-88 (98)
160 2w9m_A Polymerase X; SAXS, DNA 43.8 18 0.00061 40.5 4.6 36 560-596 93-129 (578)
161 1vq8_Y 50S ribosomal protein L 43.5 4.9 0.00017 40.2 0.0 29 566-594 16-45 (241)
162 1hsj_A Fusion protein consisti 43.3 12 0.0004 40.1 2.9 73 121-221 402-479 (487)
163 1bm9_A RTP, TER, replication t 42.2 36 0.0012 30.6 5.4 89 111-220 5-104 (122)
164 1kea_A Possible G-T mismatches 41.7 26 0.00088 34.2 4.9 48 40-87 86-135 (221)
165 1z3e_B DNA-directed RNA polyme 41.6 20 0.00068 29.3 3.4 43 51-93 19-67 (73)
166 2abk_A Endonuclease III; DNA-r 41.4 32 0.0011 33.1 5.5 49 39-87 79-129 (211)
167 1ixr_A Holliday junction DNA h 41.4 25 0.00085 33.8 4.6 52 37-90 76-130 (191)
168 3maj_A DNA processing chain A; 39.8 29 0.001 37.0 5.2 41 557-597 17-58 (382)
169 3jth_A Transcription activator 39.2 21 0.00072 29.4 3.3 36 183-218 52-89 (98)
170 2yg9_A DNA-3-methyladenine gly 38.3 38 0.0013 33.1 5.5 48 40-87 110-166 (225)
171 1mkm_A ICLR transcriptional re 37.4 49 0.0017 32.4 6.2 68 125-222 10-77 (249)
172 1mpg_A ALKA, 3-methyladenine D 36.9 50 0.0017 33.3 6.3 48 40-87 173-227 (282)
173 1cuk_A RUVA protein; DNA repai 34.8 28 0.00095 33.8 3.8 48 38-87 78-128 (203)
174 1kg2_A A/G-specific adenine gl 34.7 49 0.0017 32.2 5.6 49 38-87 79-129 (225)
175 2edu_A Kinesin-like protein KI 34.3 16 0.00053 31.0 1.7 28 558-585 33-60 (98)
176 4b21_A Probable DNA-3-methylad 34.2 42 0.0014 33.0 5.1 48 40-87 113-170 (232)
177 3kfw_X Uncharacterized protein 32.9 53 0.0018 32.7 5.6 67 125-217 5-71 (247)
178 3s6i_A DNA-3-methyladenine gly 32.8 34 0.0011 33.6 4.1 48 40-87 102-159 (228)
179 3pqk_A Biofilm growth-associat 31.7 24 0.00081 29.4 2.4 35 183-217 52-88 (102)
180 3ory_A Flap endonuclease 1; hy 31.3 8.8 0.0003 40.6 -0.5 28 569-596 255-282 (363)
181 1orn_A Endonuclease III; DNA r 31.2 57 0.002 31.8 5.5 48 40-87 84-133 (226)
182 2vn2_A DNAD, chromosome replic 31.0 30 0.001 30.6 3.1 74 121-219 30-110 (128)
183 2o0m_A Transcriptional regulat 30.7 10 0.00036 39.3 0.0 65 125-221 22-86 (345)
184 1y0u_A Arsenical resistance op 29.9 18 0.00062 29.9 1.4 31 183-215 59-89 (96)
185 2d1h_A ST1889, 109AA long hypo 29.4 47 0.0016 27.1 3.9 68 123-219 21-96 (109)
186 2kko_A Possible transcriptiona 29.1 22 0.00076 30.2 1.8 34 183-216 54-89 (108)
187 2ijl_A AGR_C_4647P, molybdenum 29.1 34 0.0012 31.0 3.2 68 122-221 25-98 (135)
188 3qe9_Y Exonuclease 1; exonucle 28.7 31 0.0011 36.2 3.3 28 569-596 229-258 (352)
189 2obp_A Putative DNA-binding pr 28.6 38 0.0013 29.0 3.2 71 124-220 17-92 (96)
190 1t6s_A Conserved hypothetical 28.6 30 0.001 32.5 2.7 29 186-214 124-158 (162)
191 1b43_A Protein (FEN-1); nuclea 28.4 15 0.00051 38.2 0.7 30 569-598 241-270 (340)
192 1coo_A RNA polymerase alpha su 28.3 37 0.0013 29.3 3.1 43 51-93 34-82 (98)
193 1oyi_A Double-stranded RNA-bin 26.9 24 0.00082 29.5 1.6 29 183-211 46-75 (82)
194 2i5h_A Hypothetical protein AF 26.9 35 0.0012 33.3 2.9 14 61-74 155-169 (205)
195 3fhg_A Mjogg, N-glycosylase/DN 26.0 24 0.00083 34.0 1.7 17 67-83 117-133 (207)
196 1u2w_A CADC repressor, cadmium 25.9 35 0.0012 29.7 2.6 38 183-220 72-112 (122)
197 2g9w_A Conserved hypothetical 25.8 56 0.0019 28.8 4.0 69 120-213 6-78 (138)
198 2jsc_A Transcriptional regulat 25.6 25 0.00085 30.5 1.5 32 183-214 50-83 (118)
199 1r1t_A Transcriptional repress 25.4 35 0.0012 29.8 2.5 37 183-219 75-114 (122)
200 1sd4_A Penicillinase repressor 25.4 46 0.0016 28.4 3.2 73 121-219 8-83 (126)
201 2h56_A DNA-3-methyladenine gly 23.8 32 0.0011 33.8 2.1 21 67-87 138-158 (233)
202 2a1j_A DNA repair endonuclease 23.7 36 0.0012 26.6 2.0 22 67-88 4-25 (63)
203 4e9f_A Methyl-CPG-binding doma 23.4 39 0.0013 31.5 2.5 27 64-90 101-127 (161)
204 1ku9_A Hypothetical protein MJ 23.2 43 0.0015 28.9 2.7 66 125-219 28-96 (152)
205 1pu6_A 3-methyladenine DNA gly 23.2 38 0.0013 33.0 2.4 24 64-87 118-141 (218)
206 3bzc_A TEX; helix-turn-helix, 21.8 71 0.0024 37.2 4.7 51 38-92 513-563 (785)
207 2o0y_A Transcriptional regulat 21.5 59 0.002 32.1 3.5 39 183-222 54-92 (260)
208 3ci0_K Pseudopilin GSPK; gener 21.5 28 0.00094 35.6 1.1 65 21-88 113-179 (298)
209 1u9l_A Transcription elongatio 21.3 64 0.0022 25.9 3.0 21 564-584 38-58 (70)
210 1a76_A Flap endonuclease-1 pro 21.1 65 0.0022 33.1 3.9 27 569-596 229-256 (326)
211 3i0w_A 8-oxoguanine-DNA-glycos 20.3 36 0.0012 34.6 1.7 17 67-83 211-227 (290)
No 1
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=100.00 E-value=1.7e-56 Score=469.79 Aligned_cols=263 Identities=32% Similarity=0.486 Sum_probs=225.0
Q ss_pred ccccCCCCCcCCCCCCceeEEEEEeCcccccccCCchHHHHHHHHhhCCCcEEEEeccCCCEEEEeeccCC---------
Q 006771 358 NLLSVPPLSFGERFEDAYEVVLILDDREQFAVQGSRSRRIIENVCSQFKIQMEVRRLPVGDGIWIARHRQT--------- 428 (632)
Q Consensus 358 ~~~~~pp~~~~~~~~~~y~V~LvVD~RE~~s~~~~~~r~~i~~~l~~~gV~~evr~L~vGD~iWvar~k~~--------- 428 (632)
+++.++| ++|+|+||||+||+++. ..++++.+.+.|.+.||++++++|++|||+|+++++..
T Consensus 9 ~~~~~~~--------~~~~~~ivvD~RE~~~~-~~~~~~~~~~~l~~~gv~~~~~~L~vGDyiw~~~~~~~~~~~~~~~~ 79 (311)
T 2ziu_A 9 MGWHLSP--------GSYDIVLCVDLCETTGG-SSVRKQELVKELQRNSVTFDVRKLNVGDFLWVARERVTPVPGQLRPP 79 (311)
T ss_dssp -CCCBCT--------TSEEEEEEECGGGSCC------CCHHHHHHHTTTCCEECCCCSSCSEEEEEEECCCCCTTCSSCC
T ss_pred CceeecC--------CCcEEEEEEECccccCC-ccchHHHHHHHHHHCCCCeEEEecCccCEEEEEecCCCccccccccc
Confidence 4455666 46899999999998732 11134567778999999999999999999999987763
Q ss_pred -CcceeeceeEEEechhHHHhhhccchHHHHHHHHHHcCCCceEEEEeCCCCC----chhHHHHHHHHHHhhhhcCceEE
Q 006771 429 -QSEYVLDFIVERKKVDDLRSSIRDNRYRDQKLRLVRCGLKKLIYLVEGDPNS----SEAAESIKTACFTTEILEGFDVQ 503 (632)
Q Consensus 429 -~~E~VLd~IVERKrldDL~~SI~DGRf~eQK~RLk~sG~~~~iYLVEg~~~~----~~~~e~i~tAl~~tqv~~gf~V~ 503 (632)
++|+|||||||||+++||++||+||||++|++||++||+++++|||||+.+. ....++|++||+++++.+||.|+
T Consensus 80 ~~~e~vl~~~VERK~~~Dl~~Si~dgR~~~Q~~rl~~~g~~~~~ylIE~~~~~~~~~~~~~~~i~~aL~~l~v~~g~~Vi 159 (311)
T 2ziu_A 80 VGKELVLDYIIERKRMDDLCGSIIDGRFREQKFRLKRCGLRKPIYLVEECGSAAAHLSIPESTLQQAIVNTQVVDGFFVK 159 (311)
T ss_dssp CCCEEEEEEEEEEEEHHHHHHHHHHTCHHHHHHHHHTTSCSEEEEEEESCSSSHHHHSSCHHHHHHHHHHHHHTTCCEEE
T ss_pred cCceeeeeeEeEeccHHHHHHHHhcchHHHHHHHHHhCCCCCeEEEEecCCccccccCCCHHHHHHHHHHHhhhcCeEEE
Confidence 8899999999999999999999999999999999999999999999998652 23578999999999999999999
Q ss_pred EcCCHHHHHHHHHHHHHHHHHhhhhcCC---ccc-------------cccCcCCCChhhhhhhhcccccccchHHHHHHH
Q 006771 504 RTSGLADTLRKYGYITQAITEYYKVELP---EDQ-------------LKCAAVCPPFDEFLKRCQDLDKMTVSDVFAVQL 567 (632)
Q Consensus 504 rT~~~~eT~~~L~~lt~~i~~~y~~~~~---~~~-------------~~~~~~~~~f~~f~~~~~K~~~~Tv~e~f~~mL 567 (632)
+|.++.||++||..||+.+.+.|+.... ++. ......|++|++|+..+.|++++|++++|++||
T Consensus 160 ~t~s~~eTa~~l~~lt~~i~~~y~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~f~~~~~k~~~~t~~e~~~~mL 239 (311)
T 2ziu_A 160 RVQDAKESAAYLTIMTRYLQKLYQNCTLFCRSRELEGDGEAESEKMVANLSCSLMAFTEFNYGAIKNKCQTVREVFARQL 239 (311)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHTTTTCCBCCC----------------CCSCSCCEEHHHHHHHHHHHTCCBHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhccccccccCcchhccccccccccccCcccccccHHHHHHhcccccCCcHHHHHHHHH
Confidence 9999999999999999999998875421 110 112346789999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhhc----CCcccHHHHhhhhhhhcc
Q 006771 568 MQVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQS----NNAVSASASRNIFQLVWG 631 (632)
Q Consensus 568 m~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~~----~~~IG~~lSr~Iy~~vwg 631 (632)
|||||||+++|.+|+++||||.+|++||++|.+ ..+++.||+++. .++||+++|++||+ ||+
T Consensus 240 ~~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~~~~-~~e~~~lL~~i~~g~~~r~IG~~lS~kI~~-~f~ 305 (311)
T 2ziu_A 240 MQISGVSGDKAAAVLEHYSTVSSLLQAYDKCSS-ETEKEKLLSSVKYGKLKRNLGPALSRTIYQ-LYC 305 (311)
T ss_dssp TTBTTCCHHHHHHHHHHCSSHHHHHHHHHHCSS-HHHHTTTTTTCEETTTTEECHHHHHHHHHH-HHH
T ss_pred HhccCCCHHHHHHHHHHCCCHHHHHHHHHhcCC-HHHHHHHHHhcccCCCCCCcCHHHHHHHHH-Hhc
Confidence 999999999999999999999999999999976 567788898763 45699999999998 554
No 2
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=100.00 E-value=7.9e-56 Score=464.35 Aligned_cols=254 Identities=32% Similarity=0.459 Sum_probs=219.1
Q ss_pred CceeEEEEEeCcccccccCCchHHHHHHHHhhCCCcEEEEeccCCCEEEEeeccC-----CCcceeeceeEEEechhHHH
Q 006771 373 DAYEVVLILDDREQFAVQGSRSRRIIENVCSQFKIQMEVRRLPVGDGIWIARHRQ-----TQSEYVLDFIVERKKVDDLR 447 (632)
Q Consensus 373 ~~y~V~LvVD~RE~~s~~~~~~r~~i~~~l~~~gV~~evr~L~vGD~iWvar~k~-----~~~E~VLd~IVERKrldDL~ 447 (632)
++|+|+||||+||+++. ++++.+.+.|.+.||++++++|+||||+|+++++. .++|+|||+|||||+++||+
T Consensus 21 ~~~~~~ivvD~RE~~~~---~~~~~~~~~L~~~gv~~~~~~L~vGDyi~i~~~~~~~~~~~~~e~vl~~iVERKs~~Dl~ 97 (307)
T 2zix_A 21 GEYRVLLCVDIGETRGG---GHRPELLRELQRLHVTHTVRKLHVGDFVWVAQETNPRDPANPGELVLDHIVERKRLDDLC 97 (307)
T ss_dssp TCCCCCCBCCSSSCCC------CCTTSTTTGGGCCCCCCCCCCSSSBBCCCCCCC----CCCCCCCCSEEECCCCTTTTH
T ss_pred CCCEEEEEEECcccccC---cchHHHHHHHHHCCCCeEEEeCCCCCEEEEEecCCCCcccccceeeeeeeeeeeeHHHHH
Confidence 45899999999999842 12345667888999999999999999999998763 48999999999999999999
Q ss_pred hhhccchHHHHHHHHHHcCCCceEEEEeCCCCC---chhHHHHHHHHHHhhhhcCceEEEcCCHHHHHHHHHHHHHHHHH
Q 006771 448 SSIRDNRYRDQKLRLVRCGLKKLIYLVEGDPNS---SEAAESIKTACFTTEILEGFDVQRTSGLADTLRKYGYITQAITE 524 (632)
Q Consensus 448 ~SI~DGRf~eQK~RLk~sG~~~~iYLVEg~~~~---~~~~e~i~tAl~~tqv~~gf~V~rT~~~~eT~~~L~~lt~~i~~ 524 (632)
+||+||||++|++||++||+++++|||||+.+. ....++|++||+++++.+||.|++|.+..||++||..||+.+++
T Consensus 98 ~Si~dgRl~~Q~~rl~~~g~~~~~ylIE~~~~~~~~~~~~~~i~~al~~l~~~~~~~i~~t~~~~~Ta~~l~~lt~~l~e 177 (307)
T 2zix_A 98 SSIIDGRFREQKFRLKRCGLERRVYLVEEHGSVHNLSLPESTLLQAVTNTQVIDGFFVKRTADIKESAAYLALLTRGLQR 177 (307)
T ss_dssp HHHSSSHHHHHTTTTCTTTCBEEECCBSCCCSSSSCSSCHHHHHHHHHHHHHSSCCCCCBCCSHHHHTHHHHHHHTTTTT
T ss_pred HHhcCCcHHHHHHHHHhCCCCCeEEEEecCCcccccCCCHHHHHHHHHHHhhhcCeEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998542 23578999999999999999999999999999999999999998
Q ss_pred hhhhcCCcc---------------ccccCcCCCChhhhhhhhcccccccchHHHHHHHhcCCCCCHHHHHHHHHhcCCHH
Q 006771 525 YYKVELPED---------------QLKCAAVCPPFDEFLKRCQDLDKMTVSDVFAVQLMQVPQVTEEIAITVLDLYPTLL 589 (632)
Q Consensus 525 ~y~~~~~~~---------------~~~~~~~~~~f~~f~~~~~K~~~~Tv~e~f~~mLm~IpGVs~ekA~~I~~~ypTp~ 589 (632)
.|++..... ..+....|++|++|+..+.|++..|++++|++|||+|||||+++|.+|+++||||.
T Consensus 178 ~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~f~~~~~Ks~~~tv~~v~~~~L~~I~GVs~~~A~~I~~~ypTp~ 257 (307)
T 2zix_A 178 LYQGHTLRSRPWGTPGNPESGAMTSPNPLCSLLTFSDFNAGAIKNKAQSVREVFARQLMQVRGVSGEKAAALVDRYSTPA 257 (307)
T ss_dssp SSCSSCCCCCC----------------CCCCSCCSSTTTTGGGTTTSCCTTTHHHHTTTCSTTCCSTTTTTSSSSSCSHH
T ss_pred HHhcCcccccchhhhhhhhhhhccccCcccccccHHHHHHhhccccCCcHHHHHHHHHHhccCCCHHHHHHHHHHcCCHH
Confidence 876532100 01123357899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccHHHHHHHhhhhc----CCcccHHHHhhhhhhhcc
Q 006771 590 SLAHAYSILEGDVCAQEEMLWKQS----NNAVSASASRNIFQLVWG 631 (632)
Q Consensus 590 ~L~~Ay~~~~~~~~~~e~mL~~~~----~~~IG~~lSr~Iy~~vwg 631 (632)
+|++||++|.+ ..+++.||+++. .++||+++|++||+ ||+
T Consensus 258 ~L~~Ay~~~~~-~~e~~~lL~~l~~g~~~r~IG~~lSrkI~~-~f~ 301 (307)
T 2zix_A 258 SLLAAYDACAT-PKEQETLLSTIKCGRLQRNLGPALSRTLSQ-LYC 301 (307)
T ss_dssp HHHHHHHCCSS-GGGTTTTTSCCCCTTTTCCCCHHHHHHHHH-HHT
T ss_pred HHHHHHHhcCC-HHHHHHHHHhcccCCCCCccCHHHHHHHHH-HHc
Confidence 99999999966 456778888753 46799999999998 554
No 3
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=100.00 E-value=8e-35 Score=290.81 Aligned_cols=205 Identities=20% Similarity=0.219 Sum_probs=171.4
Q ss_pred eeEEEEEeCcccccccCCchHHHHHHHHhhCCCcEEEEeccCCCEEEEeeccCCCcceeeceeEEEechhHHHhhhccch
Q 006771 375 YEVVLILDDREQFAVQGSRSRRIIENVCSQFKIQMEVRRLPVGDGIWIARHRQTQSEYVLDFIVERKKVDDLRSSIRDNR 454 (632)
Q Consensus 375 y~V~LvVD~RE~~s~~~~~~r~~i~~~l~~~gV~~evr~L~vGD~iWvar~k~~~~E~VLd~IVERKrldDL~~SI~DGR 454 (632)
..+.||||+||.++ + +.+.|.+.||+++++.|++|||+|.. ++|||||+++||++||+|||
T Consensus 7 ~~~~iivD~RE~~s---~-----~~~~l~~~gv~~~~~~L~vgDy~~~~-----------~~~VERKs~~Dl~~Si~~~R 67 (219)
T 2bgw_A 7 GRPRVYVDVREERS---P-----VPSILESLGVQVIPKQLPMGDYLVSD-----------SIIVERKTSSDFAKSLFDGR 67 (219)
T ss_dssp SSCEEEEETTTTTS---S-----HHHHHHHTTCEEEEECCSSSSEEEET-----------TEEEEEEEHHHHHHHHHHSH
T ss_pred CCeEEEEECCCccc---H-----hHHHHHhCCCEEEEEEcCcCCEEeeC-----------CeEEEeCCHHHHHHHhhcCc
Confidence 58999999999863 1 55578888999999999999999986 79999999999999999999
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCC---chhHHHHHHHHHHhhhhcCceEEEcCCHHHHHHHHHHHHHHHHHhhhhcCC
Q 006771 455 YRDQKLRLVRCGLKKLIYLVEGDPNS---SEAAESIKTACFTTEILEGFDVQRTSGLADTLRKYGYITQAITEYYKVELP 531 (632)
Q Consensus 455 f~eQK~RLk~sG~~~~iYLVEg~~~~---~~~~e~i~tAl~~tqv~~gf~V~rT~~~~eT~~~L~~lt~~i~~~y~~~~~ 531 (632)
|++|+.||+++ +++++|||||+.+. ...++++.+|++++++.+||.|++|.+.+||++||..|++..+..+
T Consensus 68 l~~Q~~~l~~~-~~~~~lliE~d~~~~~~~~~~~~i~~~l~~~~~~~~~~vi~t~s~~eta~~l~~l~~~~~~~~----- 141 (219)
T 2bgw_A 68 LFEQASRLAEH-YETVFIIVEGPPVPRRYRGRERSLYAAMAALQLDYGIRLMNTMDPKGTALVIESLARLSTREG----- 141 (219)
T ss_dssp HHHHHHHHHHH-CSEEEEEEESCSSCGGGTTTHHHHHHHHHHHHHHSCCEEEEESSHHHHHHHHHHHHHHHSCBC-----
T ss_pred HHHHHHHHHHh-cCCcEEEEEecCccccccCCHHHHHHHHHHHHHHCCceEEEcCCHHHHHHHHHHHHHhccccc-----
Confidence 99999999999 99999999998643 2347899999999999999999999999999999999998652211
Q ss_pred ccccccCcCCCChhhhhhhhcccccccchHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhh
Q 006771 532 EDQLKCAAVCPPFDEFLKRCQDLDKMTVSDVFAVQLMQVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWK 611 (632)
Q Consensus 532 ~~~~~~~~~~~~f~~f~~~~~K~~~~Tv~e~f~~mLm~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~ 611 (632)
.+.++| ..+....++.+.+..+|++|||||+..|..|+++|+|+..|++|.. ++| ..
T Consensus 142 -------~~ai~~------~~~~~~~~~~~~~~~~L~~i~gVg~~~a~~Ll~~fgs~~~l~~a~~---------e~L-~~ 198 (219)
T 2bgw_A 142 -------GQRIVI------HKKPRLSDVREWQLYILQSFPGIGRRTAERILERFGSLERFFTASK---------AEI-SK 198 (219)
T ss_dssp -------CTTCCC------CCCCCCCHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSHHHHTTCCH---------HHH-HH
T ss_pred -------cccccc------ccccccccHHHHHHHHHhcCCCCCHHHHHHHHHHcCCHHHHHhCCH---------HHH-hh
Confidence 122333 2345567889999999999999999999999999999999876542 222 22
Q ss_pred hcCCcccHHHHhhhhhhh
Q 006771 612 QSNNAVSASASRNIFQLV 629 (632)
Q Consensus 612 ~~~~~IG~~lSr~Iy~~v 629 (632)
+ .-||+..+++|+.++
T Consensus 199 v--~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 199 V--EGIGEKRAEEIKKIL 214 (219)
T ss_dssp S--TTCCHHHHHHHHHHH
T ss_pred C--CCCCHHHHHHHHHHH
Confidence 1 229999999999844
No 4
>1j23_A HEF nuclease, ATP-dependent RNA helicase, putative; structure-specific endonuclease, hydrolase; 1.78A {Pyrococcus furiosus} SCOP: c.52.1.20 PDB: 1j22_A 1j24_A 1j25_A
Probab=99.98 E-value=3.1e-32 Score=255.89 Aligned_cols=130 Identities=27% Similarity=0.288 Sum_probs=117.5
Q ss_pred eEEEEEeCcccccccCCchHHHHHHHHhhCCCcEEEEeccCCCEEEEeeccCCCcceeeceeEEEechhHHHhhhccchH
Q 006771 376 EVVLILDDREQFAVQGSRSRRIIENVCSQFKIQMEVRRLPVGDGIWIARHRQTQSEYVLDFIVERKKVDDLRSSIRDNRY 455 (632)
Q Consensus 376 ~V~LvVD~RE~~s~~~~~~r~~i~~~l~~~gV~~evr~L~vGD~iWvar~k~~~~E~VLd~IVERKrldDL~~SI~DGRf 455 (632)
.+.||||+||+++ .+.+.|.+.||++++++|++|||+|.+ ++|||||+++||++||+||||
T Consensus 4 ~~~IiVD~RE~~s--------~~~~~L~~~gv~~~~~~L~vGDyi~~~-----------~~~VERKs~~DL~~Si~dgRl 64 (143)
T 1j23_A 4 GVKVVVDSRELRS--------EVVKRLKLLGVKLEVKTLDVGDYIISE-----------DVAIERKSANDLIQSIIDGGL 64 (143)
T ss_dssp -CEEEEEGGGTTS--------HHHHHHHHTTCEEEEECCSSCSEECSS-----------SEEEEEEEHHHHHHHHHTTCH
T ss_pred CcEEEEECCCcch--------HhHHHHHHCCCeEEEEECCCCCEEecC-----------CcEEEeccHHHHHHhhhcchH
Confidence 6889999999862 266688889999999999999999986 799999999999999999999
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCC--chhHHHHHHHHHHhhhhcCceEEEcCCHHHHHHHHHHHHHHHHHh
Q 006771 456 RDQKLRLVRCGLKKLIYLVEGDPNS--SEAAESIKTACFTTEILEGFDVQRTSGLADTLRKYGYITQAITEY 525 (632)
Q Consensus 456 ~eQK~RLk~sG~~~~iYLVEg~~~~--~~~~e~i~tAl~~tqv~~gf~V~rT~~~~eT~~~L~~lt~~i~~~ 525 (632)
++|++||+++ +++++|||||+... ...++++.+|++++++.+||.|++|.|.++|+++|..|++.++..
T Consensus 65 ~~Q~~rL~~~-~~~~~~LIE~~~~~~~~~~~~~l~~al~~~~~~~g~~vi~t~~~~~Ta~~l~~l~~~~q~~ 135 (143)
T 1j23_A 65 FDQVKRLKEA-YSRPIMIVEGSLYGIRNVHPNAIRGAIAAVTVDFGVPIIFSSTPEETAQYIFLIAKREQEE 135 (143)
T ss_dssp HHHHHHHHHH-CSEEEEEEESCCTTCCSSCHHHHHHHHHHHHHTSCCCEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhc-CCccEEEEEcCCcccccCCHHHHHHHHHHHHHHcCeeEEEcCCHHHHHHHHHHHHHhhccc
Confidence 9999999995 99999999998432 236889999999999999999999999999999999999988764
No 5
>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens} PDB: 2ziw_B 2zix_B 2ziv_B
Probab=99.95 E-value=3.1e-27 Score=250.83 Aligned_cols=245 Identities=15% Similarity=0.116 Sum_probs=178.6
Q ss_pred eEEEEEeCcccccccCCchHHHHHHHHhhCCCcEEEEeccCCCEEEEeeccCCC----cceeeceeEEEechhHHHhhhc
Q 006771 376 EVVLILDDREQFAVQGSRSRRIIENVCSQFKIQMEVRRLPVGDGIWIARHRQTQ----SEYVLDFIVERKKVDDLRSSIR 451 (632)
Q Consensus 376 ~V~LvVD~RE~~s~~~~~~r~~i~~~l~~~gV~~evr~L~vGD~iWvar~k~~~----~E~VLd~IVERKrldDL~~SI~ 451 (632)
.++++||..=.....| +.+.+.|...|++|.+...+++..|+.-|..... ...--++++=.-..++|+.-|.
T Consensus 22 ~~~v~lD~~ll~~~~g----~~ll~~L~~~~~~~~i~~~~ip~sI~WrRkv~~~~d~~~~~~E~~vl~~l~a~eF~~~v~ 97 (341)
T 2ziu_B 22 HIIVVLDPVLLQMEGG----GQLLGALQTMECRCVIEAQAVPCSVTWRRRAGPSEDREDWVEEPTVLVLLRAEAFVSMID 97 (341)
T ss_dssp GCEEEECHHHHTSTTH----HHHHHHHHHSSCEEEECCCSSTTEEEEEC---------CCCBCSCEEEEEEHHHHHHHHH
T ss_pred eEEEEEChHHhhcccH----HHHHHHHHhCCCeEEEEecCCCceEEEEEecCCCCCcccceEccEEEEEEEHHHHHHHHh
Confidence 7899999876653222 3455588899999999999999988655533221 0011134555668888998888
Q ss_pred cc-------------hHHHHHHHHHHc-CCCceEEEEeCCCCC--------------------------------chhHH
Q 006771 452 DN-------------RYRDQKLRLVRC-GLKKLIYLVEGDPNS--------------------------------SEAAE 485 (632)
Q Consensus 452 DG-------------Rf~eQK~RLk~s-G~~~~iYLVEg~~~~--------------------------------~~~~e 485 (632)
++ -+.....+++.. .-.+++|||||.... ....+
T Consensus 98 ~~~~~~~~~~~~~~~tL~~~v~~l~~~~p~~~~~llI~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (341)
T 2ziu_B 98 NGKQGSLDSTMKGKETLQGFVTDITAKTAGKALSLVIVDQEKCFSAQNPPRRGKQGANKQTKKQQQRQPEASIGSMVSRV 177 (341)
T ss_dssp CCC------------CCTHHHHHHHHHHTSCCEEEEEECCC------------------------------------CHH
T ss_pred hcccccccccccccchHHHHHHHHHhhCCCCeEEEEEecHHHHHHhhhhhhhhhhhhcccccccccccccCCCCCCCCHH
Confidence 73 567778888764 235899999984311 01246
Q ss_pred HHHHHHHHhhhhcCceEEEcCCHHHHHHHHHHHHHHHHHh-hhhcCCccccccCcCCCChh-hhhhhhcccccccchHHH
Q 006771 486 SIKTACFTTEILEGFDVQRTSGLADTLRKYGYITQAITEY-YKVELPEDQLKCAAVCPPFD-EFLKRCQDLDKMTVSDVF 563 (632)
Q Consensus 486 ~i~tAl~~tqv~~gf~V~rT~~~~eT~~~L~~lt~~i~~~-y~~~~~~~~~~~~~~~~~f~-~f~~~~~K~~~~Tv~e~f 563 (632)
+|++|+++|||.+||+|++|.+++||++||+.||+.|.+. |+..... . ...+|+.+. .| ....+++++|++|+|
T Consensus 178 ~ie~Al~~lqv~~~~~v~~t~~~~Et~~~l~~~T~~Ia~~pyk~~r~~-~--~~~~~~~~~~~~-~vk~~~~~~~~~d~w 253 (341)
T 2ziu_B 178 DAEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAEAPFKKLRDE-T--TFSFCLESDWAG-GVKVDLAGRGLALVW 253 (341)
T ss_dssp HHHHHHHHHHHHCSCBCCEESSHHHHHHHHHHHHHHHHCCC---CCSC-C--HHHHHTSCCTTC-CBCCCTTCTTHHHHH
T ss_pred HHHHHHHHheeecCEEEEEeCCHHHHHHHHHHHHHHHHhCcchhhhcc-C--CcceeecCcccc-ccccCCCCCcHHHHH
Confidence 7999999999999999999999999999999999999987 6543211 0 111233211 11 112234679999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhh----------cCCcccHHHHhhhhhhh
Q 006771 564 AVQLMQVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQ----------SNNAVSASASRNIFQLV 629 (632)
Q Consensus 564 ~~mLm~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~----------~~~~IG~~lSr~Iy~~v 629 (632)
++|||||||||+++|.+|+++||||.+|++||++|.+ ..+++.||+++ ..++||+++|+|||++|
T Consensus 254 ~~~L~qi~gVS~ekA~aI~~~YPTp~~L~~Ay~~~~~-~~e~~~lL~~~~~~~~~g~~~~~r~iG~~lS~rI~~~f 328 (341)
T 2ziu_B 254 RRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCFS-DKERQNLLADIQVRRGEGVTSTSRRIGPELSRRIYLQM 328 (341)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHSCSHHHHHHHHHTCSC-HHHHTTTTTTCBTTTTC----CCCBCCHHHHHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHCCCHHHHHHHHHhcCC-hHHHHHHHHhhhcccccCCcccCCccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999975 46778899864 35789999999999844
No 6
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=99.80 E-value=4.3e-20 Score=159.04 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=68.8
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhccCCCCCChhhhhccccchHHHHHHHHH----H
Q 006771 11 SKRRVVCAENEELAMYMLQKRQEMAETPKGLSENIDMTLSKAYNNICDAKNPIKTLKDLSQVKGVGKWILKLMQE----F 86 (632)
Q Consensus 11 ~~~~~~~~~N~~l~~~~~ew~~e~~e~~~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~l~~lkG~G~~i~~~L~~----~ 86 (632)
+++.++.|+||+|.+||.||++++.++ + .+.+++|+||++||++||+||+||+||++|+|||++||++|++ |
T Consensus 6 ~~~~~~~~~N~lf~~wL~e~~~~a~~r--~--~k~~~~Y~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~L~~~ 81 (87)
T 2kp7_A 6 SVRPLPVCPNPLFVRWLTEWRDEAASR--G--RHTRFVFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLKQH 81 (87)
T ss_dssp --CCCCCSCCCHHHHHHHHHHHHHHHH--T--CTTHHHHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHhc--C--chHHHHHHHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 457888899999999999999999974 3 3678999999999999999999999999999999999999765 8
Q ss_pred hhcCC
Q 006771 87 FETDS 91 (632)
Q Consensus 87 ~~~~~ 91 (632)
|+++|
T Consensus 82 c~eng 86 (87)
T 2kp7_A 82 LASGG 86 (87)
T ss_dssp HHHSC
T ss_pred HHHcC
Confidence 88876
No 7
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=99.49 E-value=3.1e-16 Score=165.09 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=114.7
Q ss_pred CCCcEEEEeccCCCE--EEEeeccCCCcceeeceeEEEechhHHHhhhcc--chHHHHHHHHHHcCCCceEEEEeCCCC-
Q 006771 405 FKIQMEVRRLPVGDG--IWIARHRQTQSEYVLDFIVERKKVDDLRSSIRD--NRYRDQKLRLVRCGLKKLIYLVEGDPN- 479 (632)
Q Consensus 405 ~gV~~evr~L~vGD~--iWvar~k~~~~E~VLd~IVERKrldDL~~SI~D--GRf~eQK~RLk~sG~~~~iYLVEg~~~- 479 (632)
-|+.++++..|-||+ |... .++||||+++||++||+| ||+++|..+|.++ +.++++||||+..
T Consensus 320 DG~~~~I~~~PY~~~kdVVSD-----------rV~VERKSVsDFInSLiDgdGRLFdQaerLarh-YerPVLLIEGDLeE 387 (685)
T 4gfj_A 320 DGSISMIATTPYRTLKDVCPD-----------LTLEEAKSVNRTLATLIDEHGLSPDAADELIEH-FESIAGILATDLEE 387 (685)
T ss_dssp TTCHHHHHTSCHHHHHHHCTT-----------CCHHHHHHHCHHHHHHHHTTCCCHHHHHHHHHH-HSSHHHHHTSCHHH
T ss_pred ccchhheeccCccchhhhcCc-----------ceEEEeCcHHHHHHHhhcCCCCHHHHHHHHHHh-cCCCEEEEEeccHH
Confidence 466777778888877 4443 488999999999999999 9999999999999 9999999999831
Q ss_pred -------CchhHHHHHHH----HHHhhhhcCceEEEcCCHHHHHHHHHHHHHHHHHh-hhh-cCCccccccCcCCCChhh
Q 006771 480 -------SSEAAESIKTA----CFTTEILEGFDVQRTSGLADTLRKYGYITQAITEY-YKV-ELPEDQLKCAAVCPPFDE 546 (632)
Q Consensus 480 -------~~~~~e~i~tA----l~~tqv~~gf~V~rT~~~~eT~~~L~~lt~~i~~~-y~~-~~~~~~~~~~~~~~~f~~ 546 (632)
...++++|++| |+++.+.+|.. .+|+.+|.......-.. +.. ........ ++.
T Consensus 388 Ie~LYteR~IhPNAIRGAveiqLASLAvkfG~g-------~eTAe~L~~~agr~l~leqi~rdrEvgkL~------SVp- 453 (685)
T 4gfj_A 388 IERMYEEGRLSEEAYRAAVEIQLAELTKKEGVG-------RKTAERLLRAFGNPERVKQLAREFEIEKLA------SVE- 453 (685)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHTSTTCC-------HHHHHHHHHHHSSHHHHHHHHHTTCHHHHH------TST-
T ss_pred hhhhhccCCCCHHHHhhhHhhhhhhhhhhcCCc-------hHHHHHHHHHhcchhhhhhhhhhhhhhccc------ccc-
Confidence 34578999999 58888888877 88988887665442111 000 00000000 000
Q ss_pred hhhhhcccccccchHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHH
Q 006771 547 FLKRCQDLDKMTVSDVFAVQLMQVPQVTEEIAITVLDLYPTLLSLAHA 594 (632)
Q Consensus 547 f~~~~~K~~~~Tv~e~f~~mLm~IpGVs~ekA~~I~~~ypTp~~L~~A 594 (632)
.+..| ...|+.+. ..||.+||||++++|..++++|+|+..+++|
T Consensus 454 --Gikek-~sktL~eq-eamLtAIaGIGp~tAeRLLEkFGSVe~Vm~A 497 (685)
T 4gfj_A 454 --GVGER-VLRSLVPG-YASLISIRGIDRERAERLLKKYGGYSKVREA 497 (685)
T ss_dssp --TCCHH-HHHHHSTT-HHHHHTSTTCCHHHHHHHHHHHTSHHHHHHS
T ss_pred --cchhh-hhcccccc-eeeeeccCCCCHHHHHHHHHHhcCHHHHHhC
Confidence 00000 01122222 5799999999999999999999999999987
No 8
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=98.48 E-value=3.9e-09 Score=112.38 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=114.5
Q ss_pred CcEEEEeccCCCEEEEeeccCCCcceeeceeE--E-----E---echhHHHhhh-ccchHHH-HHHHHHHcCCCc-eEEE
Q 006771 407 IQMEVRRLPVGDGIWIARHRQTQSEYVLDFIV--E-----R---KKVDDLRSSI-RDNRYRD-QKLRLVRCGLKK-LIYL 473 (632)
Q Consensus 407 V~~evr~L~vGD~iWvar~k~~~~E~VLd~IV--E-----R---KrldDL~~SI-~DGRf~e-QK~RLk~sG~~~-~iYL 473 (632)
+......|++|||+-+. |+++ | | |.++|++.++ .|||+++ |..+|... +.+ +++|
T Consensus 191 ~~~~L~~LE~~D~Vt~~-----------DV~~~~qr~emvrri~~ei~~yv~eLG~dGRL~~~Ql~EL~~~-~e~~~~LI 258 (377)
T 3c1y_A 191 LLSELEVLELENRVTLA-----------DVVRTLAKGFELLRIVEEIRPYIVELGEEGRLARMQLRELTED-VDDLLVLL 258 (377)
T ss_dssp HHHHHHHHHHTTCCBHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHhhhhHhhhccceeHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhc-ccccccEE
Confidence 45556789999999776 5554 7 8 9999999999 9999996 99999976 777 8999
Q ss_pred EeCCCCC---chhHHHHHHHHHHhhhhcCceEEEcCCHHHHHHHHHHHHHHHHHhhhhcCCccccccCcCCCChhhhhhh
Q 006771 474 VEGDPNS---SEAAESIKTACFTTEILEGFDVQRTSGLADTLRKYGYITQAITEYYKVELPEDQLKCAAVCPPFDEFLKR 550 (632)
Q Consensus 474 VEg~~~~---~~~~e~i~tAl~~tqv~~gf~V~rT~~~~eT~~~L~~lt~~i~~~y~~~~~~~~~~~~~~~~~f~~f~~~ 550 (632)
||+.... ...++++..|+.++.. .|..+|++.|...... .. ...+ . .++
T Consensus 259 IeDY~~~~~~~~~~~aI~~aL~sLs~---------ld~~~~A~~Lg~~~eq---~~--~~~d-~------~Vs------- 310 (377)
T 3c1y_A 259 IMDYSSEEVEEETAQNILQDFITRRE---------PSPISISRVLGYDVQQ---AA--QLDD-V------LVS------- 310 (377)
T ss_dssp HHHHSSSCCCHHHHHHHHHHHHTTSC---------CCHHHHHHHTTCCCSC---GG--GGGG-C------BCC-------
T ss_pred EccCCccccCCCCHHHHHHHHHhchh---------CCHHHHHHHhccchhc---cc--cccC-c------ccC-------
Confidence 9986533 3468899999987655 7899999887643100 00 0000 0 000
Q ss_pred hcccccccchHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhhcCCcccHHHHhhhhh
Q 006771 551 CQDLDKMTVSDVFAVQLMQVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQSNNAVSASASRNIFQ 627 (632)
Q Consensus 551 ~~K~~~~Tv~e~f~~mLm~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~~~~~IG~~lSr~Iy~ 627 (632)
.. -.++|.+||+|++..|..|+++|+|+.++++|-.+ +| .. -.+ ||+.=+++|++
T Consensus 311 -----pr-----GyRiLs~IPrl~~~iae~Lv~~FGsLq~Il~AS~e---------EL-~~-VeG-IGe~rAr~Ire 365 (377)
T 3c1y_A 311 -----AR-----GYRLLKTVARIPLSIGYNVVRMFKTLDQISKASVE---------DL-KK-VEG-IGEKRARAISE 365 (377)
T ss_dssp -----CC-----SHHHHHHTSCCCHHHHHHHHHHHCSHHHHTTCCHH---------HH-TT-STT-CCHHHHHHHHH
T ss_pred -----ch-----HHHHHhhCCCCCHHHHHHHHHHhCCHHHHHhCCHH---------HH-Hh-ccC-ccHHHHHHHHH
Confidence 11 14589999999999999999999999999987421 22 11 112 77777777776
No 9
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=96.90 E-value=0.0021 Score=67.83 Aligned_cols=77 Identities=17% Similarity=0.134 Sum_probs=59.8
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhccCCCCCChhhhhccccchHHHHHHHHHHhhcCC
Q 006771 13 RRVVCAENEELAMYMLQKRQEMAETPKGLSENIDMTLSKAYNNICDAKNPIKTLKDLSQVKGVGKWILKLMQEFFETDS 91 (632)
Q Consensus 13 ~~~~~~~N~~l~~~~~ew~~e~~e~~~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~l~~lkG~G~~i~~~L~~~~~~~~ 91 (632)
+.-..+.|.++..-|.+..+-+... |-..--..+|++|..+|+++|.+|.+..+++.|+|||++|+..+.++...+.
T Consensus 5 ~~~~~~~N~~i~~~L~~ia~l~e~~--~~~~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l~tG~ 81 (335)
T 2fmp_A 5 KAPQETLNGGITDMLTELANFEKNV--SQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGK 81 (335)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHHHSS
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 4445567999999888865544322 2223456799999999999999999999999999999999999999998654
No 10
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=96.83 E-value=0.00063 Score=54.63 Aligned_cols=51 Identities=14% Similarity=0.308 Sum_probs=40.8
Q ss_pred HHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhhcCCcccHHH-Hhhhhhhh
Q 006771 565 VQLMQVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQSNNAVSASA-SRNIFQLV 629 (632)
Q Consensus 565 ~mLm~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~~~~~IG~~l-Sr~Iy~~v 629 (632)
.+|..|||||+..+..|+++|+|+..+.+|-. ++| ..+ ||+.. +++||.++
T Consensus 4 s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~---------eeL-~~v----ig~~~~A~~I~~~l 55 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMHHVKNIAELAALSQ---------DEL-TSI----LGNAANAKQLYDFI 55 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCH---------HHH-HHH----HSCHHHHHHHHHHH
T ss_pred hHHHcCCCCCHHHHHHHHHHcCCHHHHHHCCH---------HHH-HHH----cCchHHHHHHHHHH
Confidence 36889999999999999999999999986542 222 222 77888 99999865
No 11
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=96.79 E-value=0.0012 Score=56.17 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=44.8
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhhcCCcccHHH-Hhhhhhhh
Q 006771 559 VSDVFAVQLMQVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQSNNAVSASA-SRNIFQLV 629 (632)
Q Consensus 559 v~e~f~~mLm~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~~~~~IG~~l-Sr~Iy~~v 629 (632)
....-.-+|..|||||+..+..|+++|+|+..|.+|-.+ + |..+ ||..+ +++||.+|
T Consensus 12 ~N~~~~s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~e---------E-L~~v----ig~~~~A~~I~~~l 69 (84)
T 1z00_B 12 YNPGPQDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQD---------E-LTSI----LGNAANAKQLYDFI 69 (84)
T ss_dssp SCHHHHHHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHH---------H-HHHH----HSCHHHHHHHHHHH
T ss_pred ccccHHHHHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHH---------H-HHHH----hCchHHHHHHHHHH
Confidence 455556789999999999999999999999999977421 2 2222 77788 99999865
No 12
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=96.60 E-value=0.0051 Score=65.56 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhccCCCCCChhhhhccccchHHHHHHHHHHhhcCCC
Q 006771 17 CAENEELAMYMLQKRQEMAETPKGLSENIDMTLSKAYNNICDAKNPIKTLKDLSQVKGVGKWILKLMQEFFETDSG 92 (632)
Q Consensus 17 ~~~N~~l~~~~~ew~~e~~e~~~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~l~~lkG~G~~i~~~L~~~~~~~~~ 92 (632)
.+.|..+..-|.+..+-+.-. | ..--..+|+||..+|+++|.+|.+..+++.|+|||++|++.+.++...+..
T Consensus 14 ~~~N~~i~~~L~~ia~~~e~~--g-~~~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~ 86 (360)
T 2ihm_A 14 THHNTLLSEALETLAEAAGFE--A-NEGRLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTC 86 (360)
T ss_dssp SCSCHHHHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHHHHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHHHSCC
T ss_pred CCCcHHHHHHHHHHHHHHHHc--C-CcHHHHHHHHHHHHHHhCCcccCCHHHHhcCCCCCHHHHHHHHHHHHcCCh
Confidence 367999999888865444333 4 345577999999999999999999999999999999999999999986543
No 13
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=96.55 E-value=0.0059 Score=65.52 Aligned_cols=73 Identities=12% Similarity=0.130 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhccCCCCCChhhhhccccchHHHHHHHHHHhhcCCC
Q 006771 17 CAENEELAMYMLQKRQEMAETPKGLSENIDMTLSKAYNNICDAKNPIKTLKDLSQVKGVGKWILKLMQEFFETDSG 92 (632)
Q Consensus 17 ~~~N~~l~~~~~ew~~e~~e~~~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~l~~lkG~G~~i~~~L~~~~~~~~~ 92 (632)
.+.|..+..-|.+..+-+.-. | ..--..+|+||..+|+++|.+|.+..++..|+|||++|++.+++++..+..
T Consensus 33 ~~~N~~i~~~L~~ia~~~e~~--g-~~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~tG~~ 105 (381)
T 1jms_A 33 NNYNQLFTDALDILAENDELR--E-NEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIEDGES 105 (381)
T ss_dssp CCTTHHHHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHHHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHHHSSC
T ss_pred CCCcHHHHHHHHHHHHHHHhh--C-CcHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHcCCc
Confidence 368999999888865444333 4 344567999999999999999999999999999999999999999986644
No 14
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=96.51 E-value=0.0057 Score=64.57 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=58.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhccCCCCCChhhhhccccchHHHHHHHHHHhhcCC
Q 006771 16 VCAENEELAMYMLQKRQEMAETPKGLSENIDMTLSKAYNNICDAKNPIKTLKDLSQVKGVGKWILKLMQEFFETDS 91 (632)
Q Consensus 16 ~~~~N~~l~~~~~ew~~e~~e~~~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~l~~lkG~G~~i~~~L~~~~~~~~ 91 (632)
....|.++..-|.+..+-+.-. |-. --..+|+||..+|+++|.+|.+..+++.|+|||++|++.+.++...+.
T Consensus 9 ~~~~N~~i~~~L~~ia~~~e~~--g~~-~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~ 81 (335)
T 2bcq_A 9 ATNHNLHITEKLEVLAKAYSVQ--GDK-WRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGH 81 (335)
T ss_dssp ---CCHHHHHHHHHHHHHHHHT--TCH-HHHHHHHHHHHHHHSCCSCCCCHHHHHTSTTCCHHHHHHHHHHHHSSS
T ss_pred CCCChHHHHHHHHHHHHHHHHc--Ccc-HhHHHHHHHHHHHHhCCccccCHHHHhcCCCccHHHHHHHHHHHHcCC
Confidence 4567999988888865544333 332 345799999999999999999999999999999999999999998553
No 15
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=96.08 E-value=0.0096 Score=48.23 Aligned_cols=61 Identities=13% Similarity=0.250 Sum_probs=46.0
Q ss_pred cccchHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhhcCCcccHHHHhhhhhh
Q 006771 556 KMTVSDVFAVQLMQVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQSNNAVSASASRNIFQL 628 (632)
Q Consensus 556 ~~Tv~e~f~~mLm~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~~~~~IG~~lSr~Iy~~ 628 (632)
..+.++.+...|..||||++..|..|+++|+++..|+.|- .+++..- .-||+..+.+|+.+
T Consensus 5 ~~~~~~~~~~~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~---------~~~L~~i---~Gig~~~a~~i~~~ 65 (75)
T 1x2i_A 5 ALTLAERQRLIVEGLPHVSATLARRLLKHFGSVERVFTAS---------VAELMKV---EGIGEKIAKEIRRV 65 (75)
T ss_dssp CCCHHHHHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHHCC---------HHHHTTS---TTCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHcCCCCCCHHHHHHHHHHcCCHHHHHhCC---------HHHHhcC---CCCCHHHHHHHHHH
Confidence 4556777778899999999999999999999998887542 1122221 22899999998874
No 16
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=95.14 E-value=0.028 Score=47.51 Aligned_cols=60 Identities=18% Similarity=0.244 Sum_probs=44.1
Q ss_pred cchHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhhcCCcccHHHHhhhhhhh
Q 006771 558 TVSDVFAVQLMQVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQSNNAVSASASRNIFQLV 629 (632)
Q Consensus 558 Tv~e~f~~mLm~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~~~~~IG~~lSr~Iy~~v 629 (632)
+..+.+...|..||||++..|..|+++|+++..|++|-. +++..- .-||+..+++|+.++
T Consensus 12 ~~~~~~~~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~---------~eL~~i---~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 12 DFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASR---------EDLALC---PGLGPQKARRLFDVL 71 (89)
T ss_dssp HHHHHHHHHHTTSSSCCHHHHHHHHHHTCBHHHHHHCCH---------HHHHTS---TTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCH---------HHHHhC---CCCCHHHHHHHHHHH
Confidence 445567778999999999999999999999988875421 122221 228888888888643
No 17
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=94.99 E-value=0.021 Score=48.66 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=46.4
Q ss_pred cccchHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhhcCCcccHHHHhhhhhhh
Q 006771 556 KMTVSDVFAVQLMQVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQSNNAVSASASRNIFQLV 629 (632)
Q Consensus 556 ~~Tv~e~f~~mLm~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~~~~~IG~~lSr~Iy~~v 629 (632)
..+..+.++..|..||||++..|..|+++|+++..|++|- .++|..- .-||+..+++|+.++
T Consensus 23 ~~~~~~~~~~~L~~IpgIG~~~A~~Ll~~fgs~~~l~~as---------~~eL~~i---~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 23 EQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAAS---------REDLALC---PGLGPQKARRLFDVL 84 (91)
T ss_dssp HHHHHHHHHHHHTTSTTCCHHHHHHHHHHHSSHHHHHSCC---------HHHHHTS---SSCCSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCC---------HHHHHhC---CCCCHHHHHHHHHHH
Confidence 4456677888899999999999999999999998877431 1233222 228999999998754
No 18
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=94.08 E-value=0.058 Score=45.72 Aligned_cols=72 Identities=22% Similarity=0.189 Sum_probs=51.7
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHH-HHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeec
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDA-AEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSS 201 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~-Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~g 201 (632)
..-|.||..|+.. ++++-.||.+. |+..+-+ + -|.-..++.|+++|||.+.-
T Consensus 8 ~~q~~iL~~l~~~-----~~~~~~el~~~la~~l~is-----~-----------------~tvs~~l~~Le~~gli~r~~ 60 (99)
T 1tbx_A 8 YPEAIVLAYLYDN-----EGIATYDLYKKVNAEFPMS-----T-----------------ATFYDAKKFLIQEGFVKERQ 60 (99)
T ss_dssp CHHHHHHHHHTTC-----TTCBHHHHHHHHHTTSCCC-----H-----------------HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHc-----CCcCHHHHHHHHHHHcCCC-----H-----------------HHHHHHHHHHHHCCCEEEEe
Confidence 4568889998653 46888888544 4543322 1 13455789999999998764
Q ss_pred CC--CceecChhHHHHHHHHHh
Q 006771 202 CP--AKYMLTPGGREAARECLS 221 (632)
Q Consensus 202 rP--~rY~LTdeG~elA~~l~~ 221 (632)
.| ..|.||++|.++...+..
T Consensus 61 ~~r~~~~~LT~~G~~~~~~~~~ 82 (99)
T 1tbx_A 61 ERGEKRLYLTEKGKLFAISLKT 82 (99)
T ss_dssp ETTEEEEEECHHHHHHHHHHHH
T ss_pred cCCceEEEECHHHHHHHHHHHH
Confidence 44 359999999999998765
No 19
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=93.78 E-value=0.038 Score=54.95 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=43.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhhcCCcccH-HHHhhhhhhh
Q 006771 562 VFAVQLMQVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQSNNAVSA-SASRNIFQLV 629 (632)
Q Consensus 562 ~f~~mLm~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~~~~~IG~-~lSr~Iy~~v 629 (632)
.+...|..|||||+..|..|+++|+|+..|.+|-. |+ |..+ ||+ .+++.|+++|
T Consensus 165 ~~~s~LdgIpGIG~k~ak~Ll~~FgSl~~i~~As~---------Ee-L~~V----IG~~~~A~~I~~~f 219 (220)
T 2nrt_A 165 SLRSVLDNVPGIGPIRKKKLIEHFGSLENIRSASL---------EE-IARV----IGSTEIARRVLDIL 219 (220)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHTSCH---------HH-HHHH----HTCHHHHHHHHHHC
T ss_pred cccccccCCCCcCHHHHHHHHHHcCCHHHHHhCCH---------HH-HHHH----hChHHHHHHHHHHh
Confidence 35567899999999999999999999999876532 23 3333 999 9999999854
No 20
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=93.21 E-value=0.046 Score=45.04 Aligned_cols=53 Identities=23% Similarity=0.196 Sum_probs=39.7
Q ss_pred HHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhhcCCcccHHHHhhhhhh
Q 006771 564 AVQLMQVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQSNNAVSASASRNIFQL 628 (632)
Q Consensus 564 ~~mLm~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~~~~~IG~~lSr~Iy~~ 628 (632)
...|..||||++..|..|+++|+++..|++|- .+++ ..+ .-||+..+.+|+.+
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~fgsl~~l~~a~---------~eeL-~~i--~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKYMGGLQGLRNAS---------VEEI-AKV--PGISQGLAEKIFWS 75 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHHHSCHHHHHHCC---------HHHH-TTS--SSTTSHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCHHHHHHCC---------HHHH-HHC--CCCCHHHHHHHHHH
Confidence 34588999999999999999999998887552 1122 221 22899999999874
No 21
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=92.50 E-value=0.22 Score=48.43 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=40.5
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhhcCCcccHHHHhhhhh
Q 006771 559 VSDVFAVQLMQVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQSNNAVSASASRNIFQ 627 (632)
Q Consensus 559 v~e~f~~mLm~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~~~~~IG~~lSr~Iy~ 627 (632)
-+++|. .|..|+|||+..|.+|+++|++ ..|++|-.+.+. +.|..+ .+ ||+..+++|+.
T Consensus 67 ek~~f~-~L~~v~GIGpk~A~~iL~~f~~-~~l~~aI~~~d~------~~L~~v-pG-IG~K~A~rI~~ 125 (191)
T 1ixr_A 67 NLALFE-LLLSVSGVGPKVALALLSALPP-RLLARALLEGDA------RLLTSA-SG-VGRRLAERIAL 125 (191)
T ss_dssp HHHHHH-HHHSSSCCCHHHHHHHHHHSCH-HHHHHHHHTTCH------HHHTTS-TT-CCHHHHHHHHH
T ss_pred HHHHHH-HHhcCCCcCHHHHHHHHHhCCh-HHHHHHHHhCCH------HHHHhC-CC-CCHHHHHHHHH
Confidence 366776 8999999999999999999988 455555443221 223321 12 77777777775
No 22
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=91.43 E-value=0.64 Score=40.99 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCC-CcccccchhhHHHHhcCcEeee--
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSP-RDWYSGWSCMKTLITKGLVVKS-- 200 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~-~~fYtaWsSmktLi~k~LV~~~-- 200 (632)
--|+||..|... .++=-||++.-+..+.-.+.+ ++ . +--..++.|.++|||...
T Consensus 14 ~~~~IL~~L~~~------~~~gyel~~~l~~~g~~~~~i--------------s~~~---tly~~L~~Le~~GlI~~~~~ 70 (118)
T 2esh_A 14 LASTILLLVAEK------PSHGYELAERLAEFGIEIPGI--------------GHMG---NIYRVLADLEESGFLSTEWD 70 (118)
T ss_dssp HHHHHHHHHHHS------CBCHHHHHHHHHTTCCSSTTC--------------CCCC---CHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHcC------CCCHHHHHHHHHHhCCcccCC--------------CCcc---hHHHHHHHHHHCCCeEEEee
Confidence 467888888542 366678877665432111111 11 1 234467899999999753
Q ss_pred ---cCCCc-eecChhHHHHHHHHHh
Q 006771 201 ---SCPAK-YMLTPGGREAARECLS 221 (632)
Q Consensus 201 ---grP~r-Y~LTdeG~elA~~l~~ 221 (632)
|+|.+ |.|||+|+++......
T Consensus 71 ~~~~~~r~~Y~LT~~G~~~l~~~~~ 95 (118)
T 2esh_A 71 TTVSPPRKIYRITPQGKLYLREILR 95 (118)
T ss_dssp CSSSSCEEEEEECHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEChHHHHHHHHHHH
Confidence 44544 9999999999887553
No 23
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=90.51 E-value=0.48 Score=41.90 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee----
Q 006771 125 AYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS---- 200 (632)
Q Consensus 125 aYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~---- 200 (632)
.++||..|... -++=-||+..-+......+.+. +. |--..++.|.++|||...
T Consensus 14 ~~~IL~~L~~~------~~~Gyei~~~l~~~~~~~~~i~--------------~g---tly~~L~rLe~~GlI~~~~~~~ 70 (116)
T 3f8b_A 14 NVILLNVLKQG------DNYVYGIIKQVKEASNGEMELN--------------EA---TLYTIFKRLEKDGIISSYWGDE 70 (116)
T ss_dssp HHHHHHHHHHC------CBCHHHHHHHHHHHTTTCCCCC--------------HH---HHHHHHHHHHHTTSEEEEEEC-
T ss_pred HHHHHHHHHhC------CCCHHHHHHHHHHHhCCCCCCC--------------cc---hHHHHHHHHHHCCCEEEEeecc
Confidence 45666666432 2555677776665432222222 11 344567899999999743
Q ss_pred --cCCCc-eecChhHHHHHHHHHh
Q 006771 201 --SCPAK-YMLTPGGREAARECLS 221 (632)
Q Consensus 201 --grP~r-Y~LTdeG~elA~~l~~ 221 (632)
|+|.+ |.|||+|++.......
T Consensus 71 ~~~~~rk~Y~LT~~G~~~l~~~~~ 94 (116)
T 3f8b_A 71 SQGGRRKYYRLTEIGHENMRLAFE 94 (116)
T ss_dssp ---CCEEEEEECHHHHHHHHHHHH
T ss_pred CCCCCceEEEECHHHHHHHHHHHH
Confidence 44554 8999999999887654
No 24
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=90.33 E-value=0.052 Score=54.17 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhhcCCcccHHHHhhhhhhh
Q 006771 562 VFAVQLMQVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQSNNAVSASASRNIFQLV 629 (632)
Q Consensus 562 ~f~~mLm~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~~~~~IG~~lSr~Iy~~v 629 (632)
.+...|..|||||+..|..|+++|+|+..|.+|-.+ + |..+ . ||+.+++.|+.+|
T Consensus 170 ~~~s~L~~IpGIG~k~ak~Ll~~FGSl~~i~~As~e---------e-L~~V--G-IG~~~A~~I~~~f 224 (226)
T 3c65_A 170 MFHSVLDDIPGVGEKRKKALLNYFGSVKKMKEATVE---------E-LQRA--N-IPRAVAEKIYEKL 224 (226)
T ss_dssp --------------------------------------------------------------------
T ss_pred cccccccccCCCCHHHHHHHHHHhCCHHHHHhCCHH---------H-HHHc--C-CCHHHHHHHHHHh
Confidence 334568999999999999999999999999876422 2 3332 3 9999999999854
No 25
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=90.30 E-value=0.29 Score=54.95 Aligned_cols=71 Identities=23% Similarity=0.241 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhccCCCCCChhh-----hhccccchHHHHHHHHHHhhcCCC
Q 006771 20 NEELAMYMLQKRQEMAETPKGLSENIDMTLSKAYNNICDAKNPIKTLKD-----LSQVKGVGKWILKLMQEFFETDSG 92 (632)
Q Consensus 20 N~~l~~~~~ew~~e~~e~~~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~-----l~~lkG~G~~i~~~L~~~~~~~~~ 92 (632)
|..+...|.+..+-+.-. |-..--..+|+||.++|+++|.+|.+..+ +..|+|+|+.+...+.++..++..
T Consensus 3 N~~i~~~l~~~a~~~e~~--g~~~~r~~aYr~Aa~~l~~~~~~i~~~~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~ 78 (575)
T 3b0x_A 3 NQELARIFEEIGLMSEFL--GDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVGPDLAEKILEFLRTGKV 78 (575)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHCCSCHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHhCCcchhhHhhcchhHHHhCCCCCHHHHHHHHHHHHcCcH
Confidence 667777777754433333 32223457999999999999999999988 999999999999999988887654
No 26
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=90.20 E-value=0.31 Score=43.34 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=50.6
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
..-|.||..|+.. +++|-.||.+.. + +.+ -+....++.|+++|||.+...
T Consensus 37 ~~~~~iL~~l~~~-----~~~t~~eLa~~l---~-----~~~-----------------~~vs~~l~~L~~~Glv~r~~~ 86 (143)
T 3oop_A 37 PEQWSVLEGIEAN-----EPISQKEIALWT---K-----KDT-----------------PTVNRIVDVLLRKELIVREIS 86 (143)
T ss_dssp HHHHHHHHHHHHH-----SSEEHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHTTSEEEEC-
T ss_pred HHHHHHHHHHHHc-----CCcCHHHHHHHH---C-----CCH-----------------hhHHHHHHHHHHCCCeeccCC
Confidence 4567899999865 468888887653 2 211 256678899999999997654
Q ss_pred C-----CceecChhHHHHHHHHHh
Q 006771 203 P-----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 203 P-----~rY~LTdeG~elA~~l~~ 221 (632)
| ..+.||++|.++...+..
T Consensus 87 ~~D~R~~~~~LT~~G~~~~~~~~~ 110 (143)
T 3oop_A 87 TEDRRISLLSLTDKGRKETTELRD 110 (143)
T ss_dssp ---CCSCEEEECHHHHHHHHHHHH
T ss_pred CccCceeeeeECHHHHHHHHHHHH
Confidence 4 358999999999998764
No 27
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=90.15 E-value=0.39 Score=42.89 Aligned_cols=71 Identities=15% Similarity=0.068 Sum_probs=50.3
Q ss_pred CCchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee
Q 006771 121 RNSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS 200 (632)
Q Consensus 121 ~rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~ 200 (632)
..-.-|.||..|+.. ++++-.||.+.. + +.+ -+.-..++.|+++|||.+.
T Consensus 38 l~~~~~~iL~~l~~~-----~~~t~~ela~~l---~-----~~~-----------------~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 38 IGMTEWRIISVLSSA-----SDCSVQKISDIL---G-----LDK-----------------AAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp CCHHHHHHHHHHHHS-----SSBCHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHTTSEEC-
T ss_pred CCHHHHHHHHHHHcC-----CCCCHHHHHHHH---C-----CCH-----------------HHHHHHHHHHHHCCCEEee
Confidence 444578899999765 378888887643 2 211 2456678999999999977
Q ss_pred cC-----CCceecChhHHHHHHHHHh
Q 006771 201 SC-----PAKYMLTPGGREAARECLS 221 (632)
Q Consensus 201 gr-----P~rY~LTdeG~elA~~l~~ 221 (632)
.. ...+.||++|.++...+..
T Consensus 88 ~~~~D~R~~~~~lT~~G~~~~~~~~~ 113 (148)
T 3nrv_A 88 GHSEDKRTYAINLTEMGQELYEVASD 113 (148)
T ss_dssp --------CCBEECHHHHHHHHHHHH
T ss_pred cCCCCcceeEeEECHhHHHHHHHHHH
Confidence 43 3469999999999998765
No 28
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=89.96 E-value=0.59 Score=42.66 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=51.8
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
..-|.||..|+.. ++++=.||.+.. + +.+ -+....++.|+++|||.+...
T Consensus 46 ~~q~~iL~~l~~~-----~~~t~~eLa~~l---~-----~~~-----------------~tvs~~l~~Le~~Glv~r~~~ 95 (162)
T 3k0l_A 46 LPQFTALSVLAAK-----PNLSNAKLAERS---F-----IKP-----------------QSANKILQDLLANGWIEKAPD 95 (162)
T ss_dssp HHHHHHHHHHHHC-----TTCCHHHHHHHH---T-----SCG-----------------GGHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHC-----CCCCHHHHHHHH---C-----CCH-----------------HHHHHHHHHHHHCcCeEecCC
Confidence 3568899999865 368888886643 2 211 156778899999999998766
Q ss_pred CC-----ceecChhHHHHHHHHHh
Q 006771 203 PA-----KYMLTPGGREAARECLS 221 (632)
Q Consensus 203 P~-----rY~LTdeG~elA~~l~~ 221 (632)
|. .+.||++|+++...+..
T Consensus 96 ~~DrR~~~l~LT~~G~~~~~~~~~ 119 (162)
T 3k0l_A 96 PTHGRRILVTVTPSGLDKLNQCNQ 119 (162)
T ss_dssp CSSSCCEEEEECHHHHHHHHHHHH
T ss_pred CCcCCeeEeEECHhHHHHHHHHHH
Confidence 63 49999999999998765
No 29
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=89.86 E-value=0.3 Score=43.95 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=48.4
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
..-|.||..|+... .++|-.||.+... +.+ -|....++.|+++|||.+...
T Consensus 39 ~~q~~vL~~l~~~~----~~~t~~eLa~~l~--------i~~-----------------~tvs~~l~~Le~~Glv~r~~~ 89 (150)
T 3fm5_A 39 VRSYSVLVLACEQA----EGVNQRGVAATMG--------LDP-----------------SQIVGLVDELEERGLVVRTLD 89 (150)
T ss_dssp HHHHHHHHHHHHST----TCCCSHHHHHHHT--------CCH-----------------HHHHHHHHHHHTTTSEEC---
T ss_pred HHHHHHHHHHHhCC----CCcCHHHHHHHHC--------CCH-----------------hHHHHHHHHHHHCCCEEeeCC
Confidence 35688999887642 3588888876532 211 256778899999999998766
Q ss_pred CC-----ceecChhHHHHHHHHHh
Q 006771 203 PA-----KYMLTPGGREAARECLS 221 (632)
Q Consensus 203 P~-----rY~LTdeG~elA~~l~~ 221 (632)
|. .+.||++|+++...+..
T Consensus 90 ~~D~R~~~~~LT~~G~~~~~~~~~ 113 (150)
T 3fm5_A 90 PSDRRNKLIAATEEGRRLRDDAKA 113 (150)
T ss_dssp --------CEECHHHHHHHHHHHH
T ss_pred ccccchheeeECHHHHHHHHHHHH
Confidence 53 48999999999998764
No 30
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=89.83 E-value=0.3 Score=47.87 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=25.1
Q ss_pred chHHHHHHHhcCCCCCHHHHHHHHHhcCC
Q 006771 559 VSDVFAVQLMQVPQVTEEIAITVLDLYPT 587 (632)
Q Consensus 559 v~e~f~~mLm~IpGVs~ekA~~I~~~ypT 587 (632)
-+++|. .|..|+|||+..|.+|+++|++
T Consensus 68 ek~~f~-~L~~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 68 ERTLFK-ELIKTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp HHHHHH-HHHHSSSCCHHHHHHHHHHSCH
T ss_pred HHHHHH-HHhcCCCcCHHHHHHHHhhCCh
Confidence 467777 8999999999999999999987
No 31
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=89.76 E-value=0.49 Score=42.14 Aligned_cols=68 Identities=19% Similarity=0.112 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+.. +++|-.||.+.. + +.+ -+....++.|+++|||.+...|
T Consensus 32 ~q~~iL~~l~~~-----~~~t~~eLa~~l---~-----~~~-----------------~tvs~~l~~Le~~Glv~r~~~~ 81 (145)
T 3g3z_A 32 NLFAVLYTLATE-----GSRTQKHIGEKW---S-----LPK-----------------QTVSGVCKTLAGQGLIEWQEGE 81 (145)
T ss_dssp HHHHHHHHHHHH-----CSBCHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHTTSEEECCCS
T ss_pred HHHHHHHHHHHC-----CCCCHHHHHHHH---C-----CCH-----------------HHHHHHHHHHHHCCCEeeccCC
Confidence 468899999765 348888887642 2 211 1566778999999999986555
Q ss_pred -----CceecChhHHHHHHHHHh
Q 006771 204 -----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~~ 221 (632)
..|.||++|.++...+..
T Consensus 82 ~D~R~~~~~LT~~G~~~~~~~~~ 104 (145)
T 3g3z_A 82 QDRRKRLLSLTETGKAYAAPLTE 104 (145)
T ss_dssp SCGGGSCEEECHHHHHHHHHHHH
T ss_pred CCCceeeeeEChhHHHHHHHHHH
Confidence 259999999999987764
No 32
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=89.41 E-value=0.57 Score=41.05 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=49.3
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
..-|.||..|+.. ++++-.||.+. .+ +.+ -+....++.|+++|||.+...
T Consensus 33 ~~~~~iL~~l~~~-----~~~~~~ela~~---l~-----~~~-----------------~tvs~~l~~L~~~gli~r~~~ 82 (139)
T 3bja_A 33 YVQFGVIQVLAKS-----GKVSMSKLIEN---MG-----CVP-----------------SNMTTMIQRMKRDGYVMTEKN 82 (139)
T ss_dssp HHHHHHHHHHHHS-----CSEEHHHHHHH---CS-----SCC-----------------TTHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHc-----CCcCHHHHHHH---HC-----CCh-----------------hHHHHHHHHHHHCCCeeeccC
Confidence 3457888888763 35888887653 22 211 145677899999999987644
Q ss_pred C-----CceecChhHHHHHHHHHh
Q 006771 203 P-----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 203 P-----~rY~LTdeG~elA~~l~~ 221 (632)
| ..|.||++|.++...+..
T Consensus 83 ~~d~r~~~~~lT~~G~~~~~~~~~ 106 (139)
T 3bja_A 83 PNDQRETLVYLTKKGEETKKQVDV 106 (139)
T ss_dssp SSCTTCEEEEECHHHHHHHHHHHH
T ss_pred CCCCceeEEEECHHHHHHHHHHHH
Confidence 3 348999999999988764
No 33
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=89.15 E-value=0.58 Score=41.60 Aligned_cols=69 Identities=16% Similarity=0.010 Sum_probs=47.8
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
-.-|.||..|+.. +++|-.||-+.. + +.+ -+....++.|+++|||.+...
T Consensus 37 ~~~~~vL~~l~~~-----~~~t~~eLa~~l---~-----~~~-----------------~tvs~~l~~L~~~Glv~r~~~ 86 (142)
T 3ech_A 37 PPDVHVLKLIDEQ-----RGLNLQDLGRQM---C-----RDK-----------------ALITRKIRELEGRNLVRRERN 86 (142)
T ss_dssp HHHHHHHHHHHHT-----TTCCHHHHHHHH---C-------------------------CHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHHHhC-----CCcCHHHHHHHh---C-----CCH-----------------HHHHHHHHHHHHCCCEeeccC
Confidence 3457899999765 368888886643 2 211 146677899999999998655
Q ss_pred C-----CceecChhHHHHHHHHHh
Q 006771 203 P-----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 203 P-----~rY~LTdeG~elA~~l~~ 221 (632)
| ..+.||++|+++...+..
T Consensus 87 ~~DrR~~~~~LT~~G~~~~~~~~~ 110 (142)
T 3ech_A 87 PSDQRSFQLFLTDEGLAIHLHAEL 110 (142)
T ss_dssp -------CCEECHHHHHHHHHHHH
T ss_pred CCCCCeeeeEECHHHHHHHHHHHH
Confidence 5 348999999999998764
No 34
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=89.11 E-value=0.39 Score=44.42 Aligned_cols=72 Identities=19% Similarity=0.181 Sum_probs=50.9
Q ss_pred CCchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee
Q 006771 121 RNSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS 200 (632)
Q Consensus 121 ~rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~ 200 (632)
....-|.||..|+.. ..++|-.||.+.. + +.+ -+.-..++.|+++|||.+.
T Consensus 51 lt~~q~~vL~~L~~~----~~~~t~~eLa~~l---~-----i~~-----------------~tvs~~l~~Le~~GlV~r~ 101 (166)
T 3deu_A 51 LTQTHWVTLHNIHQL----PPDQSQIQLAKAI---G-----IEQ-----------------PSLVRTLDQLEDKGLISRQ 101 (166)
T ss_dssp CCHHHHHHHHHHHHS----CSSEEHHHHHHHH---T-----SCH-----------------HHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHHHHHc----CCCCCHHHHHHHH---C-----CCH-----------------hhHHHHHHHHHHCCCEEee
Confidence 344578999999874 2458888886643 2 111 1456678999999999987
Q ss_pred cCC-----CceecChhHHHHHHHHHh
Q 006771 201 SCP-----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 201 grP-----~rY~LTdeG~elA~~l~~ 221 (632)
..| ..+.||++|++++..+..
T Consensus 102 ~~~~DrR~~~l~LT~~G~~~~~~~~~ 127 (166)
T 3deu_A 102 TCASDRRAKRIKLTEKAEPLIAEMEE 127 (166)
T ss_dssp --------CEEEECGGGHHHHHHHHH
T ss_pred CCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 655 358999999999998765
No 35
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=88.74 E-value=0.3 Score=41.22 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEee--
Q 006771 122 NSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVK-- 199 (632)
Q Consensus 122 rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~-- 199 (632)
...+|.||+.|+..... ...++=.||-+. .+ +.+ -|.-..++.|.++|||..
T Consensus 11 ~~~~~~iL~~l~~~~~~-~~~~t~~eLa~~---l~-----i~~-----------------~tvs~~l~~Le~~Glv~~~~ 64 (95)
T 2qvo_A 11 KEKALEILMTIYYESLG-GNDVYIQYIASK---VN-----SPH-----------------SYVWLIIKKFEEAKMVECEL 64 (95)
T ss_dssp CHHHHHHHHHHHHHHHT-TCCEEHHHHHHH---SS-----SCH-----------------HHHHHHHHHHHHTTSEEEEE
T ss_pred chhHHHHHHHHHHccCC-CCCcCHHHHHHH---HC-----cCH-----------------HHHHHHHHHHHHCcCccCCC
Confidence 34578899999865321 123777777664 22 211 144556799999999932
Q ss_pred ecCCCceecChhHHHHHHHHHh
Q 006771 200 SSCPAKYMLTPGGREAARECLS 221 (632)
Q Consensus 200 ~grP~rY~LTdeG~elA~~l~~ 221 (632)
.+|-..|.||++|.+++..+..
T Consensus 65 d~R~~~v~LT~~G~~~~~~~~~ 86 (95)
T 2qvo_A 65 EGRTKIIRLTDKGQKIAQQIKS 86 (95)
T ss_dssp ETTEEEEEECHHHHHHHHHHHH
T ss_pred CCCeEEEEEChhHHHHHHHHHH
Confidence 2444469999999999998775
No 36
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=88.63 E-value=0.34 Score=42.93 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=27.8
Q ss_pred chhhHHHHhcCcEeee-------cCCC-ceecChhHHHHHHHHHh
Q 006771 185 WSCMKTLITKGLVVKS-------SCPA-KYMLTPGGREAARECLS 221 (632)
Q Consensus 185 WsSmktLi~k~LV~~~-------grP~-rY~LTdeG~elA~~l~~ 221 (632)
-..++.|.++|||... |+|. .|.|||+|++.......
T Consensus 60 Y~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~ 104 (115)
T 2dql_A 60 YSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLAR 104 (115)
T ss_dssp HHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHHH
Confidence 4467899999999742 3344 39999999998876553
No 37
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=88.61 E-value=0.61 Score=42.19 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeec
Q 006771 122 NSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSS 201 (632)
Q Consensus 122 rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~g 201 (632)
...-|.||..|+.. ..+++-.||.+. .+ +.+ -|.-..++.|+++|||.+..
T Consensus 46 ~~~~~~iL~~L~~~----~~~~~~~ela~~---l~-----i~~-----------------~tvs~~l~~Le~~Gli~r~~ 96 (160)
T 3boq_A 46 SLAKFDAMAQLARN----PDGLSMGKLSGA---LK-----VTN-----------------GNVSGLVNRLIKDGMVVKAM 96 (160)
T ss_dssp CHHHHHHHHHHHHC----TTCEEHHHHHHH---CS-----SCC-----------------SCHHHHHHHHHHHTSEEEC-
T ss_pred CHHHHHHHHHHHHc----CCCCCHHHHHHH---HC-----CCh-----------------hhHHHHHHHHHHCCCEEeec
Confidence 44567899999643 246888888664 22 221 14567789999999999865
Q ss_pred CC-----CceecChhHHHHHHHHHh
Q 006771 202 CP-----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 202 rP-----~rY~LTdeG~elA~~l~~ 221 (632)
.| ..+.||++|.++...+..
T Consensus 97 ~~~d~R~~~~~lT~~G~~~~~~~~~ 121 (160)
T 3boq_A 97 SADDRRSFSAKLTDAGLTTFKQASE 121 (160)
T ss_dssp -------CEEEECHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEChhHHHHHHHHHH
Confidence 55 248999999999988764
No 38
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=88.58 E-value=0.42 Score=44.15 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee---
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS--- 200 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~--- 200 (632)
--|+||..|... .++=-||++.-+..+.-.+.+.+ =+--.-++.|.++|||...
T Consensus 42 ~~~~IL~~L~~~------~~~gyeI~~~l~~~~~~~~~is~-----------------gtLy~~L~rLE~~GlI~~~~~~ 98 (145)
T 1xma_A 42 VDTIILSLLIEG------DSYGYEISKNIRIKTDELYVIKE-----------------TTLYSAFARLEKNGYIKSYYGE 98 (145)
T ss_dssp HHHHHHHHHHHC------CEEHHHHHHHHHHHHTTSCCCCH-----------------HHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHHhC------CCCHHHHHHHHHHhhCCccCcCh-----------------hHHHHHHHHHHHCCCEEEEEec
Confidence 467888777532 36666777755433221122211 1334567899999999753
Q ss_pred ---cCCC-ceecChhHHHHHHHHHh
Q 006771 201 ---SCPA-KYMLTPGGREAARECLS 221 (632)
Q Consensus 201 ---grP~-rY~LTdeG~elA~~l~~ 221 (632)
++|. .|.|||+|+++......
T Consensus 99 ~~~~~~rk~Y~LT~~G~~~l~~~~~ 123 (145)
T 1xma_A 99 ETQGKRRTYYRITPEGIKYYKQKCE 123 (145)
T ss_dssp EC--CEEEEEEECHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEECHHHHHHHHHHHH
Confidence 3444 39999999998876543
No 39
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=88.52 E-value=0.63 Score=41.64 Aligned_cols=71 Identities=18% Similarity=0.139 Sum_probs=49.3
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
..-|.||..|+... .+++|-.||.+.. + +.+ -+....++.|+++|||.+...
T Consensus 41 ~~q~~vL~~l~~~~---~~~~t~~eLa~~l---~-----~~~-----------------~~vs~~l~~L~~~Glv~r~~~ 92 (148)
T 3jw4_A 41 SQQGRMIGYIYENQ---ESGIIQKDLAQFF---G-----RRG-----------------ASITSMLQGLEKKGYIERRIP 92 (148)
T ss_dssp HHHHHHHHHHHHHT---TTCCCHHHHHHC-------------------------------CHHHHHHHHHHTTSBCCC--
T ss_pred HHHHHHHHHHHhCC---CCCCCHHHHHHHH---C-----CCh-----------------hHHHHHHHHHHHCCCEEeeCC
Confidence 35688999998753 2568888887632 2 211 146678899999999997755
Q ss_pred C-----CceecChhHHHHHHHHHh
Q 006771 203 P-----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 203 P-----~rY~LTdeG~elA~~l~~ 221 (632)
| ..+.||++|++++..+..
T Consensus 93 ~~DrR~~~~~LT~~G~~~~~~~~~ 116 (148)
T 3jw4_A 93 ENNARQKNIYVLPKGAALVEEFNN 116 (148)
T ss_dssp ------CCCCBCHHHHHHHHHHHH
T ss_pred CCCchhheeeECHHHHHHHHHHHH
Confidence 4 358999999999998765
No 40
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=88.41 E-value=0.45 Score=47.79 Aligned_cols=71 Identities=14% Similarity=0.039 Sum_probs=54.6
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEee
Q 006771 120 QRNSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVK 199 (632)
Q Consensus 120 ~~rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~ 199 (632)
......+.||-.|... .+++-.||-+.. + +++ -|.+.-+++|.++|||.+
T Consensus 149 ~L~~~~~~IL~~L~~~-----~~~s~~eLA~~l---g-----lsk-----------------sTv~r~L~~Le~~GlV~r 198 (244)
T 2wte_A 149 DYSREEMKLLNVLYET-----KGTGITELAKML---D-----KSE-----------------KTLINKIAELKKFGILTQ 198 (244)
T ss_dssp CCCHHHHHHHHHHHHH-----TCBCHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHc-----CCCCHHHHHHHH---C-----cCH-----------------HHHHHHHHHHHHCCCEEE
Confidence 3456789999988644 358877776643 2 211 268899999999999999
Q ss_pred ecCCCceecChhHHHHHHHHH
Q 006771 200 SSCPAKYMLTPGGREAARECL 220 (632)
Q Consensus 200 ~grP~rY~LTdeG~elA~~l~ 220 (632)
.++..+|.||+.|+++++.+.
T Consensus 199 ~~r~~~~~LT~~G~~l~~~~~ 219 (244)
T 2wte_A 199 KGKDRKVELNELGLNVIKLNK 219 (244)
T ss_dssp ETTTTEEEECHHHHHHHHHTC
T ss_pred eCCccEEEECHHHHHHHHHHh
Confidence 888778999999999998754
No 41
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=87.99 E-value=0.31 Score=45.65 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=29.0
Q ss_pred ccchhhHHHHhcCcEeee---------cCCCc-eecChhHHHHHHH
Q 006771 183 SGWSCMKTLITKGLVVKS---------SCPAK-YMLTPGGREAARE 218 (632)
Q Consensus 183 taWsSmktLi~k~LV~~~---------grP~r-Y~LTdeG~elA~~ 218 (632)
|=-.-++.|+..|||.+. |+|.+ |.||++|++.-..
T Consensus 62 TVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~ 107 (151)
T 3u1d_A 62 NLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRA 107 (151)
T ss_dssp HHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHH
Confidence 345678999999999743 88985 9999999998654
No 42
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=87.88 E-value=0.43 Score=41.74 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=30.6
Q ss_pred cchhhHHHHhcCcEeeecCCC-ceecChhHHHHHHHHHh
Q 006771 184 GWSCMKTLITKGLVVKSSCPA-KYMLTPGGREAARECLS 221 (632)
Q Consensus 184 aWsSmktLi~k~LV~~~grP~-rY~LTdeG~elA~~l~~ 221 (632)
--.-++.|.+.|||.+.-.|. .|.||+.|.++...+..
T Consensus 60 ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l~~~l~~ 98 (111)
T 3df8_A 60 LSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSLMP 98 (111)
T ss_dssp HHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEeecCcEEEEECccHHHHHHHHHH
Confidence 445678999999999765455 69999999999887754
No 43
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=87.69 E-value=0.32 Score=42.32 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=29.2
Q ss_pred cchhhHHHHhcCcEeee-----cCCCc-eecChhHHHHHHHHHh
Q 006771 184 GWSCMKTLITKGLVVKS-----SCPAK-YMLTPGGREAARECLS 221 (632)
Q Consensus 184 aWsSmktLi~k~LV~~~-----grP~r-Y~LTdeG~elA~~l~~ 221 (632)
--..++.|.++|||... |+|.+ |.|||+|+++...+..
T Consensus 43 ly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~ 86 (108)
T 3l7w_A 43 LYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTK 86 (108)
T ss_dssp HHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHH
Confidence 44567899999999753 34554 8899999998877654
No 44
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=87.57 E-value=0.42 Score=42.50 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=27.6
Q ss_pred chhhHHHHhcCcEeee------cCCCc-eecChhHHHHHHHHHh
Q 006771 185 WSCMKTLITKGLVVKS------SCPAK-YMLTPGGREAARECLS 221 (632)
Q Consensus 185 WsSmktLi~k~LV~~~------grP~r-Y~LTdeG~elA~~l~~ 221 (632)
-..++.|.++|||... |+|.+ |.||++|++.......
T Consensus 48 Y~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~ 91 (117)
T 4esf_A 48 YTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWK 91 (117)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHH
Confidence 4467899999999753 34444 8999999999887654
No 45
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=87.36 E-value=0.63 Score=42.24 Aligned_cols=68 Identities=19% Similarity=0.311 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+.. ++++-.||-+.. + +.+ -+.-..++.|+++|||.+...|
T Consensus 51 ~q~~vL~~l~~~-----~~~t~~eLa~~l---~-----~~~-----------------~tvs~~l~~Le~~Glv~r~~~~ 100 (159)
T 3s2w_A 51 GQFPFLMRLYRE-----DGINQESLSDYL---K-----IDK-----------------GTTARAIQKLVDEGYVFRQRDE 100 (159)
T ss_dssp TTHHHHHHHHHS-----CSEEHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHHHHHHHHC-----CCCCHHHHHHHH---C-----CCH-----------------HHHHHHHHHHHHCCCEEEecCC
Confidence 347899999765 468888876542 2 211 2456778999999999987655
Q ss_pred C-----ceecChhHHHHHHHHHh
Q 006771 204 A-----KYMLTPGGREAARECLS 221 (632)
Q Consensus 204 ~-----rY~LTdeG~elA~~l~~ 221 (632)
. .+.||++|++++..+..
T Consensus 101 ~DrR~~~l~LT~~G~~~~~~~~~ 123 (159)
T 3s2w_A 101 KDRRSYRVFLTEKGKKLEPDMKK 123 (159)
T ss_dssp ---CCEEEEECHHHHHHHHHHHH
T ss_pred CCCCeeEEEECHHHHHHHHHHHH
Confidence 2 48999999999998764
No 46
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=87.06 E-value=0.34 Score=40.75 Aligned_cols=39 Identities=26% Similarity=0.152 Sum_probs=31.5
Q ss_pred c-cchhhHHHHhcCcEeee---cCCCceecChhHHHHHHHHHh
Q 006771 183 S-GWSCMKTLITKGLVVKS---SCPAKYMLTPGGREAARECLS 221 (632)
Q Consensus 183 t-aWsSmktLi~k~LV~~~---grP~rY~LTdeG~elA~~l~~ 221 (632)
| ....++.|+++|||... +|-..+.||++|+++++.+..
T Consensus 46 t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~~~ 88 (95)
T 2pg4_A 46 TFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECLEK 88 (95)
T ss_dssp HHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHHHH
Confidence 5 67889999999999832 233469999999999998765
No 47
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=86.28 E-value=0.47 Score=42.13 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=28.2
Q ss_pred cchhhHHHHhcCcEeee------cCCCc-eecChhHHHHHHHHHh
Q 006771 184 GWSCMKTLITKGLVVKS------SCPAK-YMLTPGGREAARECLS 221 (632)
Q Consensus 184 aWsSmktLi~k~LV~~~------grP~r-Y~LTdeG~elA~~l~~ 221 (632)
=-..++.|.++|||... |+|.+ |.||++|++.......
T Consensus 49 lY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~~~ 93 (116)
T 3hhh_A 49 VYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQ 93 (116)
T ss_dssp HHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHH
Confidence 34567899999999743 34444 9999999999887554
No 48
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=86.19 E-value=0.5 Score=41.82 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=28.7
Q ss_pred cchhhHHHHhcCcEeee------cCCCc-eecChhHHHHHHHHHh
Q 006771 184 GWSCMKTLITKGLVVKS------SCPAK-YMLTPGGREAARECLS 221 (632)
Q Consensus 184 aWsSmktLi~k~LV~~~------grP~r-Y~LTdeG~elA~~l~~ 221 (632)
=-..++.|.++|||... |+|.+ |.||+.|++.......
T Consensus 45 lY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~ 89 (115)
T 4esb_A 45 IYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEFKQ 89 (115)
T ss_dssp HHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHHHH
Confidence 34567899999999742 34444 8899999998887654
No 49
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=85.72 E-value=0.96 Score=39.95 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+.. ++++-.||.+. .+ +.+ -|.-..++.|+++|||.+...|
T Consensus 38 ~~~~iL~~l~~~-----~~~~~~ela~~---l~-----~~~-----------------~tvs~~l~~L~~~gli~r~~~~ 87 (142)
T 2bv6_A 38 PQFLVLTILWDE-----SPVNVKKVVTE---LA-----LDT-----------------GTVSPLLKRMEQVDLIKRERSE 87 (142)
T ss_dssp HHHHHHHHHHHS-----SEEEHHHHHHH---TT-----CCT-----------------TTHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHc-----CCcCHHHHHHH---HC-----CCh-----------------hhHHHHHHHHHHCCCEEeecCC
Confidence 457888888764 35787777664 22 211 1456678999999999976544
Q ss_pred -----CceecChhHHHHHHHHHh
Q 006771 204 -----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~~ 221 (632)
..|.||++|.+++..+..
T Consensus 88 ~d~R~~~~~lT~~G~~~~~~~~~ 110 (142)
T 2bv6_A 88 VDQREVFIHLTDKSETIRPELSN 110 (142)
T ss_dssp SSTTCEEEEECHHHHHHHHHHTT
T ss_pred CCcceEEEEEChHHHHHHHHHHH
Confidence 248999999999988753
No 50
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=85.15 E-value=0.61 Score=41.44 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=49.5
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
..-|.||..|+.. .+ +-.||.+. .+-+ + -+....++.|+++|||.+...
T Consensus 37 ~~~~~iL~~l~~~-----~~-~~~~la~~---l~~~-----~-----------------~tvs~~l~~Le~~Glv~r~~~ 85 (144)
T 3f3x_A 37 YLDFSILKATSEE-----PR-SMVYLANR---YFVT-----Q-----------------SAITAAVDKLEAKGLVRRIRD 85 (144)
T ss_dssp HHHHHHHHHHHHS-----CE-EHHHHHHH---HTCC-----H-----------------HHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHC-----CC-CHHHHHHH---HCCC-----h-----------------hHHHHHHHHHHHCCCEEeccC
Confidence 3467899999764 22 66666553 3211 1 156778899999999998876
Q ss_pred CC-----ceecChhHHHHHHHHHh
Q 006771 203 PA-----KYMLTPGGREAARECLS 221 (632)
Q Consensus 203 P~-----rY~LTdeG~elA~~l~~ 221 (632)
|. .+.||++|.++...+..
T Consensus 86 ~~D~R~~~~~LT~~G~~~~~~~~~ 109 (144)
T 3f3x_A 86 SKDRRIVIVEITPKGRQVLLEANE 109 (144)
T ss_dssp TTEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCceEEEEECHHHHHHHHHHHH
Confidence 64 49999999999998764
No 51
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=84.98 E-value=0.55 Score=41.54 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=50.0
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
..-|.+|..|+... ..+++-.||.+. .+ +.+ -+.-..++.|.++|||.+...
T Consensus 37 ~~q~~vL~~l~~~~---~~~~t~~eLa~~---l~-----~~~-----------------~tvs~~l~~Le~~Glv~r~~~ 88 (127)
T 2frh_A 37 FEEFAVLTYISENK---EKEYYLKDIINH---LN-----YKQ-----------------PQVVKAVKILSQEDYFDKKRN 88 (127)
T ss_dssp HHHHHHHHHHHHTC---CSEEEHHHHHHH---SS-----SHH-----------------HHHHHHHHHHHHTTSSCCBCC
T ss_pred HHHHHHHHHHHhcc---CCCcCHHHHHHH---HC-----CCH-----------------HHHHHHHHHHHHCCCEEecCC
Confidence 34678999998742 246887777763 22 111 134556789999999998644
Q ss_pred C-----CceecChhHHHHHHHHHh
Q 006771 203 P-----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 203 P-----~rY~LTdeG~elA~~l~~ 221 (632)
| ..+.||++|.+++..+..
T Consensus 89 ~~D~R~~~i~LT~~G~~~~~~~~~ 112 (127)
T 2frh_A 89 EHDERTVLILVNAQQRKKIESLLS 112 (127)
T ss_dssp SSSSCCCEEECCSHHHHHHHHHHH
T ss_pred CCCCCeeEEEECHHHHHHHHHHHH
Confidence 4 358999999999998765
No 52
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=84.89 E-value=0.79 Score=39.22 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCCC
Q 006771 125 AYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCPA 204 (632)
Q Consensus 125 aYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP~ 204 (632)
-|-||-++. + . +++.+|...+.- . +.+.=.-+..|.++|||.+...
T Consensus 10 i~~IL~~i~----~--~-~~~t~La~~~~l--------s-----------------~~~~~~~l~~L~~~GLI~~~~~-- 55 (95)
T 1r7j_A 10 IQAILEACK----S--G-SPKTRIMYGANL--------S-----------------YALTGRYIKMLMDLEIIRQEGK-- 55 (95)
T ss_dssp HHHHHHHHT----T--C-BCHHHHHHHHTC--------C-----------------HHHHHHHHHHHHHTTSEEEETT--
T ss_pred HHHHHHHHH----c--C-CCHHHHHHHhCc--------C-----------------HHHHHHHHHHHHHCCCeEEECC--
Confidence 466666663 2 2 899999875432 1 1234455678999999998743
Q ss_pred ceecChhHHHHHHHHHh
Q 006771 205 KYMLTPGGREAARECLS 221 (632)
Q Consensus 205 rY~LTdeG~elA~~l~~ 221 (632)
.|.||++|.++-..+..
T Consensus 56 ~~~LT~kG~~~l~~l~~ 72 (95)
T 1r7j_A 56 QYMLTKKGEELLEDIRK 72 (95)
T ss_dssp EEEECHHHHHHHHHHHH
T ss_pred eeEEChhHHHHHHHHHH
Confidence 69999999998887764
No 53
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=84.78 E-value=0.91 Score=39.30 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=29.1
Q ss_pred cchhhHHHHhcCcEeee-cCCCc-eecChhHHHHHHHHHh
Q 006771 184 GWSCMKTLITKGLVVKS-SCPAK-YMLTPGGREAARECLS 221 (632)
Q Consensus 184 aWsSmktLi~k~LV~~~-grP~r-Y~LTdeG~elA~~l~~ 221 (632)
--..++.|.++|||... |+|.+ |.|||+|++..+....
T Consensus 47 lYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~ 86 (99)
T 2co5_A 47 LYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHE 86 (99)
T ss_dssp HHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHH
Confidence 34567899999999865 55543 9999999988776554
No 54
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=84.60 E-value=0.99 Score=41.53 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=51.6
Q ss_pred CCchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee
Q 006771 121 RNSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS 200 (632)
Q Consensus 121 ~rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~ 200 (632)
....-|.||..|+.. ++++-.||.+.. + +.+ -|....++.|+++|||.+.
T Consensus 43 lt~~~~~iL~~L~~~-----~~~t~~eLa~~l---~-----is~-----------------~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 43 ITIPQFRTLVILSNH-----GPINLATLATLL---G-----VQP-----------------SATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp CCHHHHHHHHHHHHH-----CSEEHHHHHHHH---T-----SCH-----------------HHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHc-----CCCCHHHHHHHh---C-----CCH-----------------HHHHHHHHHHHHCCCEEec
Confidence 445578899999864 358888876643 2 211 1566788999999999986
Q ss_pred cCC-----CceecChhHHHHHHHHHh
Q 006771 201 SCP-----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 201 grP-----~rY~LTdeG~elA~~l~~ 221 (632)
..| ..+.||++|.++...+..
T Consensus 93 ~~~~DrR~~~~~LT~~G~~~~~~~~~ 118 (168)
T 2nyx_A 93 PHPTSRRELLAALTKRGRDVVRQVTE 118 (168)
T ss_dssp ECSSCSSCEEEEECHHHHHHHHHHHH
T ss_pred cCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 444 248999999999988764
No 55
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=84.53 E-value=0.51 Score=39.40 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=22.8
Q ss_pred hhHHHHhcCcEeee--cCCCceecChhHHH
Q 006771 187 CMKTLITKGLVVKS--SCPAKYMLTPGGRE 214 (632)
Q Consensus 187 SmktLi~k~LV~~~--grP~rY~LTdeG~e 214 (632)
-+..|.+.|||.+. ||| .|.||+.|.+
T Consensus 46 hL~~Le~eGlV~~~~~gRP-~w~LT~~g~~ 74 (79)
T 1xmk_A 46 VLIDMERQGDVYRQGTTPP-IWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHTTSEEEECSSSC-EEEECHHHHT
T ss_pred HHHHHHHCCCEEecCCCCC-CeEeCHhHHh
Confidence 35789999999865 678 9999999986
No 56
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=84.39 E-value=1.4 Score=39.40 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee---
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS--- 200 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~--- 200 (632)
.-|.||..| . .+++|-.||.+.. + +.+ -+....++.|+++|||.+.
T Consensus 39 ~q~~iL~~l-~-----~~~~t~~eLa~~l---~-----~~~-----------------~~vs~~l~~Le~~Glv~r~~~~ 87 (151)
T 3kp7_A 39 EQSHVLNML-S-----IEALTVGQITEKQ---G-----VNK-----------------AAVSRRVKKLLNAELVKLEKPD 87 (151)
T ss_dssp HHHHHHHHH-H-----HSCBCHHHHHHHH---C-----SCS-----------------SHHHHHHHHHHHTTSEEC----
T ss_pred HHHHHHHHH-H-----cCCcCHHHHHHHH---C-----CCH-----------------HHHHHHHHHHHHCCCEEeeCCC
Confidence 356788888 3 2578988887753 2 111 1567788999999999973
Q ss_pred ----cCCCceecChhHHHHHHHHHh
Q 006771 201 ----SCPAKYMLTPGGREAARECLS 221 (632)
Q Consensus 201 ----grP~rY~LTdeG~elA~~l~~ 221 (632)
+|-..+.||++|.++...+..
T Consensus 88 ~~~D~R~~~~~lT~~G~~~~~~~~~ 112 (151)
T 3kp7_A 88 SNTDQRLKIIKLSNKGKKYIKERKA 112 (151)
T ss_dssp -------CCBEECHHHHHHHHHHHH
T ss_pred CCCCCCeeEEEECHhHHHHHHHHHH
Confidence 233358999999999998765
No 57
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=84.34 E-value=0.63 Score=41.22 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=27.9
Q ss_pred ccchhhHHHHhcCcEeeecCCCceecChhHHHH
Q 006771 183 SGWSCMKTLITKGLVVKSSCPAKYMLTPGGREA 215 (632)
Q Consensus 183 taWsSmktLi~k~LV~~~grP~rY~LTdeG~el 215 (632)
+.-.-++.|.+.|||...||| .|.||++|...
T Consensus 45 aVs~rL~~Le~~GLV~~~~rg-~Y~LT~~G~~~ 76 (111)
T 3b73_A 45 SVSRRLKKLADHDLLQPLANG-VYVITEEGEAY 76 (111)
T ss_dssp HHHHHHHHHHHTTSEEECSTT-CEEECHHHHHH
T ss_pred HHHHHHHHHHHCCCEEecCCc-eEEECchHHHH
Confidence 345678999999999999998 99999999875
No 58
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=84.24 E-value=1.9 Score=40.10 Aligned_cols=71 Identities=31% Similarity=0.409 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+.... ..+++-.||.+. .+ +.+ -|.-.-++.|+++|||.+...|
T Consensus 70 ~~~~iL~~L~~~~~--~~~~t~~eLa~~---l~-----is~-----------------~tvs~~l~~Le~~GlV~r~~~~ 122 (181)
T 2fbk_A 70 AGWDLLLTLYRSAP--PEGLRPTELSAL---AA-----ISG-----------------PSTSNRIVRLLEKGLIERREDE 122 (181)
T ss_dssp HHHHHHHHHHHHCC--SSCBCHHHHHHH---CS-----CCS-----------------GGGSSHHHHHHHHTSEECCC--
T ss_pred HHHHHHHHHHHcCC--CCCCCHHHHHHH---HC-----CCH-----------------HHHHHHHHHHHHCcCEEecCCC
Confidence 45789999987532 236898888764 22 211 1455678999999999986544
Q ss_pred -----CceecChhHHHHHHHHHh
Q 006771 204 -----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~~ 221 (632)
..+.||++|.++...+..
T Consensus 123 ~DrR~~~~~LT~~G~~~~~~~~~ 145 (181)
T 2fbk_A 123 RDRRSASIRLTPQGRALVTHLLP 145 (181)
T ss_dssp -----CCBEECHHHHHHHHHHHH
T ss_pred CCCCeeEEEECHHHHHHHHHHHH
Confidence 359999999999988764
No 59
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=83.74 E-value=1.3 Score=49.70 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhCC-CCCchhHHHHHHHHHHHHhccCCCCCChhh--hhccccchHHHHHHHHHHhhcCCC
Q 006771 17 CAENEELAMYMLQKRQEMAETP-KGLSENIDMTLSKAYNNICDAKNPIKTLKD--LSQVKGVGKWILKLMQEFFETDSG 92 (632)
Q Consensus 17 ~~~N~~l~~~~~ew~~e~~e~~-~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~--l~~lkG~G~~i~~~L~~~~~~~~~ 92 (632)
.+.|..+...|.+..+-+.-.. .... ...|.+|.++++++|.+|....+ +..|+|+|+.+...+.++..++..
T Consensus 7 ~~~N~~i~~~l~~~a~~~e~~g~~~~r---~~ay~~Aa~~i~~l~~~i~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~ 82 (578)
T 2w9m_A 7 APSRHRLVHALERTADLLDILGGEDFK---SRAYRSAARSLEELNEETPELLAREFTGIPKVGKGIAAELSDFARSGTF 82 (578)
T ss_dssp -CCHHHHHHHHHHHHHHHHHC---CCS---HHHHHHHHHHHHSCC----------CCSSTTCCHHHHHHHHHHHHHSSC
T ss_pred CCChHHHHHHHHHHHHHHHhhCCCccc---HHHHHHHHHHHHhCchhhhhhhHhhhhhcCCCChhHHHHHHHHHcCChH
Confidence 3579999988888654444331 1122 35899999999999999999999 999999999999999888876644
No 60
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=82.94 E-value=1 Score=36.46 Aligned_cols=26 Identities=31% Similarity=0.634 Sum_probs=24.1
Q ss_pred CCCChhhhhccccchHHHHHHHHHHh
Q 006771 62 PIKTLKDLSQVKGVGKWILKLMQEFF 87 (632)
Q Consensus 62 ~~~~~k~l~~lkG~G~~i~~~L~~~~ 87 (632)
+|.+..||.+++|||++.+++|..|+
T Consensus 48 ~~~s~~eL~~v~Gig~k~~~~i~~~l 73 (75)
T 2duy_A 48 PYARVEDLLKVKGIGPATLERLRPYL 73 (75)
T ss_dssp CCSSGGGGGGSTTCCHHHHHHHGGGE
T ss_pred ccCCHHHHHhCCCCCHHHHHHHHHhc
Confidence 89999999999999999999998775
No 61
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=82.90 E-value=0.97 Score=39.62 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+.. .+++-.||.+. .+ +.+ -+.-..++.|+++|||.+...|
T Consensus 35 ~~~~iL~~l~~~-----~~~~~~~la~~---l~-----~~~-----------------~tvs~~l~~L~~~gli~r~~~~ 84 (138)
T 1jgs_A 35 AQFKVLCSIRCA-----ACITPVELKKV---LS-----VDL-----------------GALTRMLDRLVCKGWVERLPNP 84 (138)
T ss_dssp HHHHHHHHHHHH-----SSBCHHHHHHH---HT-----CCH-----------------HHHHHHHHHHHHTTSEEEEECT
T ss_pred HHHHHHHHHHhc-----CCCCHHHHHHH---HC-----CCh-----------------HHHHHHHHHHHHCCCEEecCCc
Confidence 457788888764 35787777653 22 111 1345577999999999986554
Q ss_pred -----CceecChhHHHHHHHHHh
Q 006771 204 -----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~~ 221 (632)
..|.||++|.++...+..
T Consensus 85 ~d~R~~~~~lT~~G~~~~~~~~~ 107 (138)
T 1jgs_A 85 NDKRGVLVKLTTGGAAICEQCHQ 107 (138)
T ss_dssp TCSSCEEEEECHHHHHHHHHHHH
T ss_pred ccCceeEeEEChhHHHHHHHHHH
Confidence 248999999999988764
No 62
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=82.86 E-value=0.78 Score=37.24 Aligned_cols=52 Identities=15% Similarity=0.301 Sum_probs=35.6
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhhcCCcccHHHHhhhhhhh
Q 006771 560 SDVFAVQLMQVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQSNNAVSASASRNIFQLV 629 (632)
Q Consensus 560 ~e~f~~mLm~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~~~~~IG~~lSr~Iy~~v 629 (632)
.......|+.|||||+..|..|++.++ |.. .++|..- .-||+...++|+.++
T Consensus 22 N~a~~~~L~~ipGIG~~~A~~Il~~r~--------~~s-------~~eL~~v---~Gig~k~~~~i~~~l 73 (75)
T 2duy_A 22 NEASLEELMALPGIGPVLARRIVEGRP--------YAR-------VEDLLKV---KGIGPATLERLRPYL 73 (75)
T ss_dssp TTCCHHHHTTSTTCCHHHHHHHHHTCC--------CSS-------GGGGGGS---TTCCHHHHHHHGGGE
T ss_pred hhCCHHHHHhCCCCCHHHHHHHHHHcc--------cCC-------HHHHHhC---CCCCHHHHHHHHHhc
Confidence 333456799999999999999999872 111 1223221 238999999998754
No 63
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=82.69 E-value=0.6 Score=40.26 Aligned_cols=36 Identities=33% Similarity=0.410 Sum_probs=28.0
Q ss_pred hhhHHHHhcCcEeeecCC----C-ceecChhHHHHHHHHHh
Q 006771 186 SCMKTLITKGLVVKSSCP----A-KYMLTPGGREAARECLS 221 (632)
Q Consensus 186 sSmktLi~k~LV~~~grP----~-rY~LTdeG~elA~~l~~ 221 (632)
.-++.|.++|||.+...| . .|.||+.|.++...+..
T Consensus 58 ~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~~ 98 (107)
T 2fsw_A 58 DELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIIDE 98 (107)
T ss_dssp HHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHHHH
T ss_pred HHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHHHHHH
Confidence 356899999999876433 2 49999999998877653
No 64
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=82.63 E-value=1 Score=39.69 Aligned_cols=70 Identities=17% Similarity=0.080 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+... .+++|-.||.+.. + +.+ -+....++.|+++|||.+...|
T Consensus 32 ~~~~vL~~l~~~~---~~~~t~~ela~~l---~-----~~~-----------------~tvs~~l~~Le~~Gli~r~~~~ 83 (139)
T 3eco_A 32 EQGHTLGYLYAHQ---QDGLTQNDIAKAL---Q-----RTG-----------------PTVSNLLRNLERKKLIYRYVDA 83 (139)
T ss_dssp HHHHHHHHHHHST---TTCEEHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHHHHHHHhcC---CCCcCHHHHHHHh---C-----CCc-----------------ccHHHHHHHHHHCCCEeecCCC
Confidence 4578999998753 2478888877653 2 211 2567788999999999987554
Q ss_pred -----CceecChhHHHHHHHHHh
Q 006771 204 -----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~~ 221 (632)
..+.||++|.++...+..
T Consensus 84 ~D~R~~~~~LT~~G~~~~~~~~~ 106 (139)
T 3eco_A 84 QDTRRKNIGLTTSGIKLVEAFTS 106 (139)
T ss_dssp C--CCEEEEECHHHHHHHHHHHH
T ss_pred CCCCeeeeEECHHHHHHHHHHHH
Confidence 248999999999998765
No 65
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=82.52 E-value=0.54 Score=43.14 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=27.8
Q ss_pred chhhHHHHhcCcEeee-------cCCCc-eecChhHHHHHHHHHh
Q 006771 185 WSCMKTLITKGLVVKS-------SCPAK-YMLTPGGREAARECLS 221 (632)
Q Consensus 185 WsSmktLi~k~LV~~~-------grP~r-Y~LTdeG~elA~~l~~ 221 (632)
-..++.|.++|||... |+|.+ |.|||+|++.......
T Consensus 72 Yp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~ 116 (138)
T 2e1n_A 72 YTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQ 116 (138)
T ss_dssp HHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHHHH
Confidence 3467899999999642 34443 9999999998777654
No 66
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=82.17 E-value=1.1 Score=39.81 Aligned_cols=73 Identities=21% Similarity=0.233 Sum_probs=51.7
Q ss_pred CCchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee
Q 006771 121 RNSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS 200 (632)
Q Consensus 121 ~rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~ 200 (632)
.....+.+|.+|+..... ...++=.||.+. .+ +.+ -|.-..++.|.++|||.+.
T Consensus 11 lt~~~~~~L~~l~~l~~~-~~~~s~~ela~~---l~-----is~-----------------~tv~~~l~~Le~~Gli~r~ 64 (139)
T 2x4h_A 11 LSRREFSYLLTIKRYNDS-GEGAKINRIAKD---LK-----IAP-----------------SSVFEEVSHLEEKGLVKKK 64 (139)
T ss_dssp CCHHHHHHHHHHHHHHTT-TSCBCHHHHHHH---HT-----CCH-----------------HHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHHHHHHHhc-CCCcCHHHHHHH---hC-----CCh-----------------HHHHHHHHHHHHCCCEEec
Confidence 345567788888765433 356787776553 33 211 1456778999999999886
Q ss_pred cCCCceecChhHHHHHHHHHh
Q 006771 201 SCPAKYMLTPGGREAARECLS 221 (632)
Q Consensus 201 grP~rY~LTdeG~elA~~l~~ 221 (632)
. ..|.||+.|++++..+..
T Consensus 65 ~--~~~~Lt~~g~~~~~~~~~ 83 (139)
T 2x4h_A 65 E--DGVWITNNGTRSINYLIK 83 (139)
T ss_dssp T--TEEEECHHHHHHHHHHHH
T ss_pred C--CeEEEChhHHHHHHHHHH
Confidence 6 579999999999987654
No 67
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=81.90 E-value=1.6 Score=42.50 Aligned_cols=67 Identities=24% Similarity=0.325 Sum_probs=48.6
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCCCceec
Q 006771 129 LITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCPAKYML 208 (632)
Q Consensus 129 LlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP~rY~L 208 (632)
|-++|..... +..++-.||-+. .+-+ + -|.-.-++.|.++|||..... ..+.|
T Consensus 8 L~~I~~l~~~-~~~~~~~~lA~~---l~vs-----~-----------------~tvs~~l~~Le~~GlV~r~~~-~~i~L 60 (214)
T 3hrs_A 8 LKCLYELGTR-HNKITNKEIAQL---MQVS-----P-----------------PAVTEMMKKLLAEELLIKDKK-AGYLL 60 (214)
T ss_dssp HHHHHHTTSS-CSCCCHHHHHHH---HTCC-----H-----------------HHHHHHHHHHHHTTSEEEETT-TEEEE
T ss_pred HHHHHHHHhc-CCCcCHHHHHHH---HCCC-----h-----------------hHHHHHHHHHHHCCCEEEecC-CCeEE
Confidence 6778877654 456887766553 3322 1 145667899999999987754 47999
Q ss_pred ChhHHHHHHHHHhh
Q 006771 209 TPGGREAARECLSR 222 (632)
Q Consensus 209 TdeG~elA~~l~~~ 222 (632)
|++|+++|.++..+
T Consensus 61 T~~G~~~~~~~~~~ 74 (214)
T 3hrs_A 61 TDLGLKLVSDLYRK 74 (214)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988763
No 68
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=81.87 E-value=1.2 Score=39.57 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+.. .++++-.||.+. .+ +.+ -+.-..++.|+++|||.+...|
T Consensus 36 ~~~~iL~~l~~~----~~~~~~~~la~~---l~-----i~~-----------------~~vs~~l~~Le~~glv~r~~~~ 86 (147)
T 2hr3_A 36 SQLVVLGAIDRL----GGDVTPSELAAA---ER-----MRS-----------------SNLAALLRELERGGLIVRHADP 86 (147)
T ss_dssp HHHHHHHHHHHT----TSCBCHHHHHHH---TT-----CCH-----------------HHHHHHHHHHHHTTSEEEEC--
T ss_pred HHHHHHHHHHHc----CCCCCHHHHHHH---hC-----CCh-----------------hhHHHHHHHHHHCCCEeeCCCC
Confidence 457889999872 246888888774 22 211 1455678999999999976444
Q ss_pred -----CceecChhHHHHHHHHHh
Q 006771 204 -----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~~ 221 (632)
..|.||++|.++...+..
T Consensus 87 ~d~R~~~~~lT~~G~~~~~~~~~ 109 (147)
T 2hr3_A 87 QDGRRTRVSLSSEGRRNLYGNRA 109 (147)
T ss_dssp ----CCEEEECHHHHHHHHHHHH
T ss_pred CCCCceeeEECHHHHHHHHHHHH
Confidence 359999999999988764
No 69
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=81.86 E-value=0.92 Score=40.27 Aligned_cols=68 Identities=18% Similarity=0.163 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+.. +++|-.||.+... +.+ -|.=..++.|+++|||.+.-.|
T Consensus 37 ~q~~vL~~l~~~-----~~~t~~eLa~~l~--------~~~-----------------~tvs~~l~~L~~~Glv~r~~~~ 86 (140)
T 3hsr_A 37 TGYIVLMAIEND-----EKLNIKKLGERVF--------LDS-----------------GTLTPLLKKLEKKDYVVRTREE 86 (140)
T ss_dssp HHHHHHHHSCTT-----CEEEHHHHHHHHT--------CCH-----------------HHHHHHHHHHHHTTSEEEEC--
T ss_pred HHHHHHHHHHHc-----CCcCHHHHHHHHC--------CCh-----------------hhHHHHHHHHHHCCCeEecCCC
Confidence 457888888643 4688888877532 111 1445677999999999987555
Q ss_pred -----CceecChhHHHHHHHHHh
Q 006771 204 -----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~~ 221 (632)
..+.||++|++++..+..
T Consensus 87 ~D~R~~~~~LT~~G~~~~~~~~~ 109 (140)
T 3hsr_A 87 KDERNLQISLTEQGKAIKSPLAE 109 (140)
T ss_dssp -----CEEEECHHHHHTHHHHHH
T ss_pred CCcceeeeeEChHHHHHHHHHHH
Confidence 359999999999998764
No 70
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=81.85 E-value=1.1 Score=40.16 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+.. ++++-.||.+. .+ +.+ -+....++.|+++|||.+...|
T Consensus 44 ~~~~iL~~l~~~-----~~~t~~ela~~---l~-----i~~-----------------~tvs~~l~~Le~~Glv~r~~~~ 93 (155)
T 3cdh_A 44 PEWRVLACLVDN-----DAMMITRLAKL---SL-----MEQ-----------------SRMTRIVDQMDARGLVTRVADA 93 (155)
T ss_dssp HHHHHHHHHSSC-----SCBCHHHHHHH---TT-----CCH-----------------HHHHHHHHHHHHTTSEEECC--
T ss_pred HHHHHHHHHHHC-----CCcCHHHHHHH---HC-----CCH-----------------HHHHHHHHHHHHCCCEEeccCC
Confidence 456788888643 46888888764 22 211 2566778999999999976544
Q ss_pred -----CceecChhHHHHHHHHHh
Q 006771 204 -----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~~ 221 (632)
..|.||++|.++...+..
T Consensus 94 ~d~R~~~~~lT~~G~~~~~~~~~ 116 (155)
T 3cdh_A 94 KDKRRVRVRLTDDGRALAESLVA 116 (155)
T ss_dssp ----CCCEEECHHHHHHHHHHHH
T ss_pred CcCCeeEeEECHHHHHHHHHHHH
Confidence 459999999999988764
No 71
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=81.83 E-value=0.99 Score=40.83 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=47.8
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
..-|.||..|+.. .+++-.||.+.. + +.+ -+.-..++.|+++|||.+...
T Consensus 49 ~~~~~iL~~l~~~-----~~~t~~ela~~l---~-----is~-----------------~tvs~~l~~Le~~glv~r~~~ 98 (162)
T 2fa5_A 49 IPEWRVITILALY-----PGSSASEVSDRT---A-----MDK-----------------VAVSRAVARLLERGFIRRETH 98 (162)
T ss_dssp HHHHHHHHHHHHS-----TTCCHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHHHhC-----CCCCHHHHHHHH---C-----CCH-----------------HHHHHHHHHHHHCCCEeeecC
Confidence 3567899999773 468888887642 2 111 144556799999999997654
Q ss_pred C-----CceecChhHHHHHHHHHh
Q 006771 203 P-----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 203 P-----~rY~LTdeG~elA~~l~~ 221 (632)
| ..|.||++|.++...+..
T Consensus 99 ~~d~R~~~~~lT~~G~~~~~~~~~ 122 (162)
T 2fa5_A 99 GDDRRRSMLALSPAGRQVYETVAP 122 (162)
T ss_dssp ------CCCEECHHHHHHHHHHHH
T ss_pred CCCCCeeEEEECHHHHHHHHHHHH
Confidence 4 459999999999987664
No 72
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=81.73 E-value=0.9 Score=39.50 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=30.4
Q ss_pred ccchhhHHHHhcCcEeeecCC----C-ceecChhHHHHHHHHHh
Q 006771 183 SGWSCMKTLITKGLVVKSSCP----A-KYMLTPGGREAARECLS 221 (632)
Q Consensus 183 taWsSmktLi~k~LV~~~grP----~-rY~LTdeG~elA~~l~~ 221 (632)
+-...++.|.++|||.+...| . .|.||++|.++...+..
T Consensus 52 tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~~~~~ 95 (112)
T 1z7u_A 52 VLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALSS 95 (112)
T ss_dssp HHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHHHHHH
Confidence 456677999999999876433 2 49999999998877653
No 73
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=81.41 E-value=0.89 Score=40.84 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=48.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+.. ++++-.||.+.. + +.+ -+.-..++.|+++|||.+...|
T Consensus 42 ~q~~iL~~l~~~-----~~~~~~eLa~~l---~-----~~~-----------------~~vs~~l~~L~~~Glv~r~~~~ 91 (149)
T 4hbl_A 42 SQYLVMLTLWEE-----NPQTLNSIGRHL---D-----LSS-----------------NTLTPMLKRLEQSGWVKRERQQ 91 (149)
T ss_dssp HHHHHHHHHHHS-----SSEEHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHHTSEEC----
T ss_pred HHHHHHHHHHHC-----CCCCHHHHHHHH---C-----CCH-----------------HHHHHHHHHHHHCCCEeeCCCC
Confidence 457899999765 468888877653 2 211 1456678999999999977544
Q ss_pred -----CceecChhHHHHHHHHHh
Q 006771 204 -----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~~ 221 (632)
..+.||++|.++...+..
T Consensus 92 ~D~R~~~~~LT~~G~~~~~~~~~ 114 (149)
T 4hbl_A 92 SDKRQLIITLTDNGQQQQEAVFE 114 (149)
T ss_dssp -----CEEEECSHHHHHHHHHHH
T ss_pred CCcceeeeeECHHHHHHHHHHHH
Confidence 359999999999988764
No 74
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=81.31 E-value=1.1 Score=39.80 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=49.9
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
..-|.||..|+.. ++++-.||.+.. + +.+ -+.-..++.|+++|||.+...
T Consensus 42 ~~~~~iL~~l~~~-----~~~t~~ela~~l---~-----~~~-----------------~tvs~~l~~Le~~Glv~r~~~ 91 (150)
T 2rdp_A 42 PPQFVALQWLLEE-----GDLTVGELSNKM---Y-----LAC-----------------STTTDLVDRMERNGLVARVRD 91 (150)
T ss_dssp HHHHHHHHHHHHH-----CSBCHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHc-----CCCCHHHHHHHH---C-----CCc-----------------hhHHHHHHHHHHCCCeeecCC
Confidence 3467899999874 358888887643 2 111 145567899999999998644
Q ss_pred C-----CceecChhHHHHHHHHHh
Q 006771 203 P-----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 203 P-----~rY~LTdeG~elA~~l~~ 221 (632)
| ..|.||++|.++...+..
T Consensus 92 ~~d~R~~~~~lT~~G~~~~~~~~~ 115 (150)
T 2rdp_A 92 EHDRRVVRIRLLEKGERIIEEVIE 115 (150)
T ss_dssp CC---CEEEEECHHHHHHHHHHHH
T ss_pred CCCcceeEeEECHhHHHHHHHHHH
Confidence 4 349999999999988764
No 75
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=80.56 E-value=1.3 Score=38.97 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+.. .++++-.||.+.. + +.+ -+.-..++.|+++|||.+...|
T Consensus 38 ~~~~iL~~l~~~----~~~~t~~~la~~l---~-----~s~-----------------~~vs~~l~~L~~~glv~r~~~~ 88 (146)
T 2fbh_A 38 ARWLVLLHLARH----RDSPTQRELAQSV---G-----VEG-----------------PTLARLLDGLESQGLVRRLAVA 88 (146)
T ss_dssp THHHHHHHHHHC----SSCCBHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHTTSEEEECCB
T ss_pred HHHHHHHHHHHc----CCCCCHHHHHHHh---C-----CCh-----------------hhHHHHHHHHHHCCCeeecCCC
Confidence 457888888443 3568888887743 2 211 1456678999999999987544
Q ss_pred -----CceecChhHHHHHHHHHh
Q 006771 204 -----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~~ 221 (632)
..|.||++|.++...+..
T Consensus 89 ~d~R~~~~~lT~~G~~~~~~~~~ 111 (146)
T 2fbh_A 89 EDRRAKHIVLTPKADVLIADIEA 111 (146)
T ss_dssp TTBCSCEEEECTTHHHHHHHHHH
T ss_pred cccCeeeeEECHhHHHHHHHHHH
Confidence 349999999999988754
No 76
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=80.52 E-value=0.77 Score=40.75 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=27.5
Q ss_pred cchhhHHHHhcCcEeee------cCCCc-eecChhHHHHHHHHH
Q 006771 184 GWSCMKTLITKGLVVKS------SCPAK-YMLTPGGREAARECL 220 (632)
Q Consensus 184 aWsSmktLi~k~LV~~~------grP~r-Y~LTdeG~elA~~l~ 220 (632)
=-..++.|.++|||... |+|.+ |.|||+|++......
T Consensus 50 ly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~ 93 (117)
T 3elk_A 50 IYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHS 93 (117)
T ss_dssp HHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHH
Confidence 34567899999999742 34443 999999999887643
No 77
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=80.50 E-value=1.3 Score=40.32 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+.. ++++-.||.+. .+ +.+ -+.-..++.|+++|||.+...|
T Consensus 54 ~q~~vL~~l~~~-----~~~t~~eLa~~---l~-----~~~-----------------~~vs~~l~~Le~~Glv~r~~~~ 103 (161)
T 3e6m_A 54 PKLRLLSSLSAY-----GELTVGQLATL---GV-----MEQ-----------------STTSRTVDQLVDEGLAARSISD 103 (161)
T ss_dssp HHHHHHHHHHHH-----SEEEHHHHHHH---TT-----CCH-----------------HHHHHHHHHHHHTTSEEECC--
T ss_pred HHHHHHHHHHhC-----CCCCHHHHHHH---HC-----CCH-----------------HHHHHHHHHHHHCCCEEeeCCc
Confidence 467899999875 36888887663 22 211 2456677999999999987555
Q ss_pred -----CceecChhHHHHHHHHHh
Q 006771 204 -----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~~ 221 (632)
..+.||++|.++...+..
T Consensus 104 ~DrR~~~~~LT~~G~~~~~~~~~ 126 (161)
T 3e6m_A 104 ADQRKRTVVLTRKGKKKLAEISP 126 (161)
T ss_dssp -CCCSCEEEECHHHHHHHHHHHH
T ss_pred ccCCeeEeeECHHHHHHHHHHHH
Confidence 358999999999998765
No 78
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=80.36 E-value=0.95 Score=39.63 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=50.3
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
..-|.||..|+.. ++++-.||.+. .+ +.+ -|.-..++.|+++|||.+...
T Consensus 38 ~~~~~iL~~l~~~-----~~~t~~ela~~---l~-----~~~-----------------~tvs~~l~~L~~~glv~r~~~ 87 (140)
T 2nnn_A 38 PTQWAALVRLGET-----GPCPQNQLGRL---TA-----MDA-----------------ATIKGVVERLDKRGLIQRSAD 87 (140)
T ss_dssp HHHHHHHHHHHHH-----SSBCHHHHHHH---TT-----CCH-----------------HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHc-----CCCCHHHHHHH---HC-----CCH-----------------HHHHHHHHHHHHCCCEEeeCC
Confidence 3467899999765 36888888764 21 211 156677899999999998644
Q ss_pred C-----CceecChhHHHHHHHHHh
Q 006771 203 P-----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 203 P-----~rY~LTdeG~elA~~l~~ 221 (632)
| ..|.||++|.++...+..
T Consensus 88 ~~d~R~~~~~lT~~G~~~~~~~~~ 111 (140)
T 2nnn_A 88 PDDGRRLLVSLSPAGRAELEAGLA 111 (140)
T ss_dssp TTEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCCeeeeEECHhHHHHHHHHHH
Confidence 4 359999999999988764
No 79
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=80.15 E-value=1.6 Score=39.72 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
+-|.+|..|+.......+.||=.||-+...- + + -|.=..++.|+++||| +.-.|
T Consensus 34 ~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~---~-----~-----------------~tvsr~v~~Le~~glV-r~~~~ 87 (148)
T 4fx0_A 34 TQFSTLAVISLSEGSAGIDLTMSELAARIGV---E-----R-----------------TTLTRNLEVMRRDGLV-RVMAG 87 (148)
T ss_dssp HHHHHHHHHHC---------CHHHHHHHHTC---C-----H-----------------HHHHHHHHHHHHTTSB-C----
T ss_pred HHHHHHHHHHHhcCCCCCCcCHHHHHHHHCC---C-----h-----------------hhHHHHHHHHHHCCCE-EeeCC
Confidence 4689999998775433456888888775321 1 1 1233456899999999 55444
Q ss_pred C-----ceecChhHHHHHHHHHh
Q 006771 204 A-----KYMLTPGGREAARECLS 221 (632)
Q Consensus 204 ~-----rY~LTdeG~elA~~l~~ 221 (632)
. ...||++|+++..++..
T Consensus 88 ~DrR~~~v~LT~~G~~~~~~~~~ 110 (148)
T 4fx0_A 88 ADARCKRIELTAKGRAALQKAVP 110 (148)
T ss_dssp -------CCBCHHHHHHHHHHHH
T ss_pred CCCCeeEEEECHHHHHHHHHHHH
Confidence 2 48999999999887653
No 80
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=79.89 E-value=1 Score=39.60 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+... ..+++-.||.+.. +-+ + -+.=..++.|+++|||.+...|
T Consensus 35 ~~~~iL~~l~~~~---~~~~~~~ela~~l---~~~-----~-----------------~tvs~~l~~Le~~Gli~r~~~~ 86 (141)
T 3bro_A 35 TQMTIIDYLSRNK---NKEVLQRDLESEF---SIK-----S-----------------STATVLLQRMEIKKLLYRKVSG 86 (141)
T ss_dssp HHHHHHHHHHHTT---TSCCBHHHHHHHH---TCC-----H-----------------HHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHCC---CCCcCHHHHHHHH---CCC-----c-----------------chHHHHHHHHHHCCCEEeeCCC
Confidence 4578899998753 2368888887643 211 1 1233457899999999987544
Q ss_pred -----CceecChhHHHHHHHHHh
Q 006771 204 -----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~~ 221 (632)
..+.||++|.+++..+..
T Consensus 87 ~d~R~~~i~lT~~G~~~~~~~~~ 109 (141)
T 3bro_A 87 KDSRQKCLKLTKKANKLETIILS 109 (141)
T ss_dssp SCTTSEEEEECHHHHTTHHHHHH
T ss_pred cCCCeeeeEECHHHHHHHHHHHH
Confidence 258899999999988764
No 81
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=79.80 E-value=0.5 Score=43.99 Aligned_cols=36 Identities=17% Similarity=0.380 Sum_probs=26.9
Q ss_pred chhhHHHHhcCcEeee-------cCCCc-eecChhHHHHHHHHH
Q 006771 185 WSCMKTLITKGLVVKS-------SCPAK-YMLTPGGREAARECL 220 (632)
Q Consensus 185 WsSmktLi~k~LV~~~-------grP~r-Y~LTdeG~elA~~l~ 220 (632)
-..++.|.++|||... |+|.+ |.|||+|++......
T Consensus 82 Yp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~ 125 (148)
T 2zfw_A 82 YTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLA 125 (148)
T ss_dssp HHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHHH
T ss_pred HHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHHHH
Confidence 4467899999999743 34444 999999998766554
No 82
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=79.75 E-value=1.5 Score=39.28 Aligned_cols=39 Identities=31% Similarity=0.426 Sum_probs=29.0
Q ss_pred ccchhhHHHHhcCcEeee-----cCCCc-eecChhHHHHHHHHHh
Q 006771 183 SGWSCMKTLITKGLVVKS-----SCPAK-YMLTPGGREAARECLS 221 (632)
Q Consensus 183 taWsSmktLi~k~LV~~~-----grP~r-Y~LTdeG~elA~~l~~ 221 (632)
|=-..++.|.++|||... ++|.+ |.||++|++....+..
T Consensus 54 tlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~ 98 (123)
T 3ri2_A 54 TLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEA 98 (123)
T ss_dssp HHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHH
Confidence 344567899999999743 33344 8899999999887654
No 83
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=79.55 E-value=1.3 Score=36.68 Aligned_cols=67 Identities=22% Similarity=0.190 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeec---
Q 006771 125 AYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSS--- 201 (632)
Q Consensus 125 aYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~g--- 201 (632)
-+.||..|+.. +.++-.||.+. .+ +.+ -|.+.-++.|.++|||.+..
T Consensus 18 ~~~iL~~L~~~-----~~~~~~ela~~---l~-----is~-----------------~tvs~~l~~L~~~gli~~~~~~~ 67 (100)
T 1ub9_A 18 RLGIMIFLLPR-----RKAPFSQIQKV---LD-----LTP-----------------GNLDSHIRVLERNGLVKTYKVIA 67 (100)
T ss_dssp HHHHHHHHHHH-----SEEEHHHHHHH---TT-----CCH-----------------HHHHHHHHHHHHTTSEEEEEECS
T ss_pred HHHHHHHHHhc-----CCcCHHHHHHH---HC-----cCH-----------------HHHHHHHHHHHHCCCEEEEecCC
Confidence 36788888653 34777777663 22 211 15677889999999998543
Q ss_pred -CC-CceecChhHHHHHHHHHh
Q 006771 202 -CP-AKYMLTPGGREAARECLS 221 (632)
Q Consensus 202 -rP-~rY~LTdeG~elA~~l~~ 221 (632)
++ ..|.||++|.++...+..
T Consensus 68 ~~r~~~~~lt~~g~~~~~~~~~ 89 (100)
T 1ub9_A 68 DRPRTVVEITDFGMEEAKRFLS 89 (100)
T ss_dssp SSCEEEEEECHHHHHHHHHHHH
T ss_pred CcceEEEEECHHHHHHHHHHHH
Confidence 33 369999999988776543
No 84
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=79.31 E-value=0.73 Score=39.75 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=30.2
Q ss_pred ccchhhHHHHhcCcEeeecCC----C-ceecChhHHHHHHHHHh
Q 006771 183 SGWSCMKTLITKGLVVKSSCP----A-KYMLTPGGREAARECLS 221 (632)
Q Consensus 183 taWsSmktLi~k~LV~~~grP----~-rY~LTdeG~elA~~l~~ 221 (632)
+--..++.|.++|||.+...| . .|.||+.|.++...+..
T Consensus 44 tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~~~~~ 87 (107)
T 2hzt_A 44 MLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILDM 87 (107)
T ss_dssp HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHHHHHH
Confidence 456678999999999876432 2 59999999998876653
No 85
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=79.20 E-value=1.7 Score=38.71 Aligned_cols=68 Identities=19% Similarity=0.146 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+.. ++++-.||.+.. + +.+ -+.-..++.|+++|||.+...|
T Consensus 41 ~~~~iL~~l~~~-----~~~t~~ela~~l---~-----~~~-----------------~~vs~~l~~Le~~Glv~r~~~~ 90 (152)
T 3bj6_A 41 GQRAILEGLSLT-----PGATAPQLGAAL---Q-----MKR-----------------QYISRILQEVQRAGLIERRTNP 90 (152)
T ss_dssp HHHHHHHHHHHS-----TTEEHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHTTSEEEECCS
T ss_pred HHHHHHHHHHhC-----CCCCHHHHHHHH---C-----CCH-----------------HHHHHHHHHHHHCCCeeecCCc
Confidence 357888888764 358877777643 2 111 1455677999999999986544
Q ss_pred -----CceecChhHHHHHHHHHh
Q 006771 204 -----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~~ 221 (632)
..|.||++|.++...+..
T Consensus 91 ~d~R~~~~~lT~~G~~~~~~~~~ 113 (152)
T 3bj6_A 91 EHARSHRYWLTPRGEAIITAIRA 113 (152)
T ss_dssp SSTTSCEEEECHHHHHHHHHHHH
T ss_pred ccccceeeEEChhhHHHHHHHHH
Confidence 358999999999988764
No 86
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=79.19 E-value=1.6 Score=38.55 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+ . ++++-.||.+. .+ +.+ -+....++.|+++|||.+...|
T Consensus 38 ~~~~iL~~l~-~-----~~~~~~ela~~---l~-----~s~-----------------~tvs~~l~~Le~~glv~r~~~~ 86 (146)
T 2gxg_A 38 LDFLVLRATS-D-----GPKTMAYLANR---YF-----VTQ-----------------SAITASVDKLEEMGLVVRVRDR 86 (146)
T ss_dssp HHHHHHHHHT-T-----SCBCHHHHHHH---TT-----CCH-----------------HHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHh-c-----CCcCHHHHHHH---hC-----CCc-----------------hhHHHHHHHHHHCCCEEeecCC
Confidence 4578888886 2 46888888764 22 211 1456678999999999976444
Q ss_pred -----CceecChhHHHHHHHHHh
Q 006771 204 -----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~~ 221 (632)
..|.||++|.++...+..
T Consensus 87 ~d~r~~~~~lT~~G~~~~~~~~~ 109 (146)
T 2gxg_A 87 EDRRKILIEITEKGLETFNKGIE 109 (146)
T ss_dssp SCTTCEEEEECHHHHHHHHHHHH
T ss_pred CCCceEEEEECHHHHHHHHHHHH
Confidence 348999999999988664
No 87
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=78.62 E-value=1.7 Score=38.34 Aligned_cols=68 Identities=10% Similarity=0.163 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+.. ++++-.||.+.- + +.+ -+.-..++.|+++|||.+...|
T Consensus 30 ~~~~iL~~l~~~-----~~~t~~~la~~l---~-----~s~-----------------~~vs~~l~~Le~~gli~r~~~~ 79 (144)
T 1lj9_A 30 GQYLYLVRVCEN-----PGIIQEKIAELI---K-----VDR-----------------TTAARAIKRLEEQGFIYRQEDA 79 (144)
T ss_dssp THHHHHHHHHHS-----TTEEHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHC-----cCcCHHHHHHHH---C-----CCH-----------------hHHHHHHHHHHHCCCEEeecCC
Confidence 357888888764 367877776642 2 111 1455678999999999987554
Q ss_pred -----CceecChhHHHHHHHHHh
Q 006771 204 -----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~~ 221 (632)
..|.||++|.++...+..
T Consensus 80 ~d~R~~~~~lT~~G~~~~~~~~~ 102 (144)
T 1lj9_A 80 SNKKIKRIYATEKGKNVYPIIVR 102 (144)
T ss_dssp SCTTCEEEEECHHHHHHHHHHHH
T ss_pred CCCceeeeEEChhHHHHHHHHHH
Confidence 248999999999988764
No 88
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=78.45 E-value=1.7 Score=39.38 Aligned_cols=70 Identities=21% Similarity=0.252 Sum_probs=48.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.+|..|+... .+.+|=.||-+.. +.+ + -+.=..++.|+++|||.+.-.|
T Consensus 36 ~q~~vL~~L~~~~---~~~~t~~eLa~~l---~~~-----~-----------------~tvs~~v~~Le~~Glv~r~~~~ 87 (147)
T 4b8x_A 36 ARYEALVLLTFSK---SGELPMSKIGERL---MVH-----P-----------------TSVTNTVDRLVRSGLVAKRPNP 87 (147)
T ss_dssp HHHHHHHHHHTSG---GGEEEHHHHHHHH---TCC-----H-----------------HHHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHHHHHHHHCC---CCCcCHHHHHHHH---CCC-----H-----------------HHHHHHHHHHHhCCCEEEeecC
Confidence 4578888887542 2457877776642 211 1 1223456899999999988777
Q ss_pred C-----ceecChhHHHHHHHHHh
Q 006771 204 A-----KYMLTPGGREAARECLS 221 (632)
Q Consensus 204 ~-----rY~LTdeG~elA~~l~~ 221 (632)
. ...||++|+++...+..
T Consensus 88 ~DrR~~~l~LT~~G~~~~~~~~~ 110 (147)
T 4b8x_A 88 NDGRGTLATITDKGREVVEAATR 110 (147)
T ss_dssp ----CEEEEECHHHHHHHHHHHH
T ss_pred CcCceeEEEECHHHHHHHHHHHH
Confidence 4 38899999999988754
No 89
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=78.30 E-value=1.4 Score=38.09 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=28.5
Q ss_pred CCCCCChhhhhccccchHHHHHHHHHHhhcCCC
Q 006771 60 KNPIKTLKDLSQVKGVGKWILKLMQEFFETDSG 92 (632)
Q Consensus 60 p~~~~~~k~l~~lkG~G~~i~~~L~~~~~~~~~ 92 (632)
-.||.+..||++++|||++..++|+.|+..-..
T Consensus 45 ~GpF~s~edL~~V~Gig~~~~e~l~~~l~~f~v 77 (97)
T 3arc_U 45 NAPYESVEDVLNIPGLTERQKQILRENLEHFTV 77 (97)
T ss_dssp HCCCSSGGGGGGCTTCCHHHHHHHHHTGGGEEC
T ss_pred cCCCCCHHHHHhccCCCHHHHHHHHHHhceeEe
Confidence 479999999999999999999999987664333
No 90
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=78.29 E-value=1.4 Score=38.72 Aligned_cols=66 Identities=21% Similarity=0.228 Sum_probs=46.5
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
..-|.||..|+.. ++++-.||.+.- + +.+ -+.-..++.|.++|||.+...
T Consensus 31 ~~~~~iL~~l~~~-----~~~~~~ela~~l---~-----is~-----------------~~vs~~l~~L~~~gli~~~~~ 80 (142)
T 3bdd_A 31 LTRYSILQTLLKD-----APLHQLALQERL---Q-----IDR-----------------AAVTRHLKLLEESGYIIRKRN 80 (142)
T ss_dssp HHHHHHHHHHHHH-----CSBCHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHhC-----CCCCHHHHHHHH---C-----CCH-----------------HHHHHHHHHHHHCCCEEecCC
Confidence 3467889888764 358888877642 2 111 134456799999999998744
Q ss_pred C-----CceecChhHHHHH-HH
Q 006771 203 P-----AKYMLTPGGREAA-RE 218 (632)
Q Consensus 203 P-----~rY~LTdeG~elA-~~ 218 (632)
| ..|.||++|.++. ..
T Consensus 81 ~~d~r~~~~~lT~~G~~~~~~~ 102 (142)
T 3bdd_A 81 PDNQREVLVWPTEQAREALITN 102 (142)
T ss_dssp SSSTTCEEEEECHHHHHHHTTS
T ss_pred CCCCCeeEEEECHHHHHHHHHH
Confidence 3 3599999999998 54
No 91
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=78.10 E-value=1.3 Score=39.82 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=28.1
Q ss_pred hhhHHHHhcCcEeeecCC----C-ceecChhHHHHHHHHHh
Q 006771 186 SCMKTLITKGLVVKSSCP----A-KYMLTPGGREAARECLS 221 (632)
Q Consensus 186 sSmktLi~k~LV~~~grP----~-rY~LTdeG~elA~~l~~ 221 (632)
.-++.|.++|||.+.-.| . .|.||+.|.++...+..
T Consensus 68 ~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~~ 108 (131)
T 1yyv_A 68 QSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXVAA 108 (131)
T ss_dssp HHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHHHHHH
Confidence 356899999999876432 3 59999999998877654
No 92
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=77.95 E-value=1.7 Score=39.16 Aligned_cols=70 Identities=19% Similarity=0.192 Sum_probs=50.2
Q ss_pred CchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeec
Q 006771 122 NSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSS 201 (632)
Q Consensus 122 rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~g 201 (632)
...-+.||..|+.. .+++-.||.+. .+ +.+ -|.-..++.|+++|||.+..
T Consensus 43 t~~~~~iL~~l~~~-----~~~t~~ela~~---l~-----is~-----------------~tvs~~l~~Le~~Gli~r~~ 92 (154)
T 2eth_A 43 KTTELYAFLYVALF-----GPKKMKEIAEF---LS-----TTK-----------------SNVTNVVDSLEKRGLVVREM 92 (154)
T ss_dssp BHHHHHHHHHHHHH-----CCBCHHHHHHH---TT-----SCH-----------------HHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHHc-----CCCCHHHHHHH---HC-----CCH-----------------HHHHHHHHHHHHCCCEEeeC
Confidence 34567889888764 35888888764 22 211 14556789999999999764
Q ss_pred CC-----CceecChhHHHHHHHHHh
Q 006771 202 CP-----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 202 rP-----~rY~LTdeG~elA~~l~~ 221 (632)
.| ..|.||++|.++...+..
T Consensus 93 ~~~d~R~~~~~lT~~G~~~~~~~~~ 117 (154)
T 2eth_A 93 DPVDRRTYRVVLTEKGKEIFGEILS 117 (154)
T ss_dssp CTTTSSCEEEEECHHHHHHHHHHHH
T ss_pred CCCCcceeEEEECHHHHHHHHHHHH
Confidence 43 348999999999988764
No 93
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=77.91 E-value=1.6 Score=40.03 Aligned_cols=70 Identities=20% Similarity=0.137 Sum_probs=51.4
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+... ..+++-.||.+. .+ +.+ -+....++.|+++|||.+...|
T Consensus 47 ~q~~vL~~l~~~~---~~~~t~~eLa~~---l~-----~~~-----------------~tvs~~l~~Le~~Glv~r~~~~ 98 (168)
T 3u2r_A 47 QQYNTLRLLRSVH---PEGMATLQIADR---LI-----SRA-----------------PDITRLIDRLDDRGLVLRTRKP 98 (168)
T ss_dssp HHHHHHHHHHHHT---TSCEEHHHHHHH---C--------C-----------------THHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHhcC---CCCcCHHHHHHH---HC-----CCh-----------------hhHHHHHHHHHHCCCEeecCCC
Confidence 4578999998752 246888888664 22 211 1566778999999999987666
Q ss_pred C-----ceecChhHHHHHHHHHh
Q 006771 204 A-----KYMLTPGGREAARECLS 221 (632)
Q Consensus 204 ~-----rY~LTdeG~elA~~l~~ 221 (632)
. .+.||++|.+++..+..
T Consensus 99 ~DrR~~~l~LT~~G~~~~~~~~~ 121 (168)
T 3u2r_A 99 ENRRVVEVALTDAGLKLLKDLEE 121 (168)
T ss_dssp TEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCeeEeEECHHHHHHHHHHHH
Confidence 3 48999999999998765
No 94
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=77.57 E-value=1.8 Score=39.51 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=48.3
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
.+-|.+|..|++.. .+++-.||-+ ..+-+ + -|.=..++.|+++|||.+.-.
T Consensus 31 ~~q~~vL~~L~~~~----~~~~~~eLa~---~l~~~-----~-----------------~tvs~~v~~Le~~GlV~R~~~ 81 (151)
T 4aik_A 31 QTHWVTLYNINRLP----PEQSQIQLAK---AIGIE-----Q-----------------PSLVRTLDQLEEKGLITRHTS 81 (151)
T ss_dssp HHHHHHHHHHHHSC----TTSCHHHHHH---HHTSC-----H-----------------HHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHcC----CCCcHHHHHH---HHCcC-----H-----------------HHHHHHHHHHHhCCCeEeecC
Confidence 35688999998652 3566555544 43322 1 023345689999999998776
Q ss_pred CC-----ceecChhHHHHHHHHHh
Q 006771 203 PA-----KYMLTPGGREAARECLS 221 (632)
Q Consensus 203 P~-----rY~LTdeG~elA~~l~~ 221 (632)
|. ...|||+|.++..++..
T Consensus 82 ~~DrR~~~l~LT~~G~~~~~~~~~ 105 (151)
T 4aik_A 82 ANDRRAKRIKLTEQSSPIIEQVDG 105 (151)
T ss_dssp SSCTTCEEEEECGGGHHHHHHHHH
T ss_pred CCCCcchhhhcCHHHHHHHHHHHH
Confidence 64 48999999999998764
No 95
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=77.45 E-value=1.8 Score=39.15 Aligned_cols=69 Identities=19% Similarity=0.124 Sum_probs=49.4
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
..-|.||..|+.. ++++-.||.+.. + +.+ -+....++.|+++|||.+...
T Consensus 52 ~~~~~iL~~l~~~-----~~~t~~ela~~l---~-----is~-----------------~tvs~~l~~Le~~Gli~r~~~ 101 (162)
T 3cjn_A 52 TAKMRALAILSAK-----DGLPIGTLGIFA---V-----VEQ-----------------STLSRALDGLQADGLVRREVD 101 (162)
T ss_dssp HHHHHHHHHHHHS-----CSEEHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHC-----CCCCHHHHHHHH---C-----CCh-----------------hHHHHHHHHHHHCCCEEecCC
Confidence 3457889888764 358888886642 2 211 146677899999999987644
Q ss_pred C-----CceecChhHHHHHHHHHh
Q 006771 203 P-----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 203 P-----~rY~LTdeG~elA~~l~~ 221 (632)
| ..|.||++|.++...+..
T Consensus 102 ~~d~R~~~~~lT~~G~~~~~~~~~ 125 (162)
T 3cjn_A 102 SDDQRSSRVYLTPAGRAVYDRLWP 125 (162)
T ss_dssp --CCSSEEEEECHHHHHHHHHHHH
T ss_pred CCCCCeeEEEECHHHHHHHHHHHH
Confidence 3 359999999999988764
No 96
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=77.35 E-value=1.3 Score=42.38 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccch-hhHHHHhcCcEe----
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWS-CMKTLITKGLVV---- 198 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWs-SmktLi~k~LV~---- 198 (632)
=+||||=-|... -|+==||...-..+|.-+ +||- |..-. .++.|.++|||-
T Consensus 14 ~~l~VLGlL~e~------p~h~Yei~~~i~~~~~~s--------------~gSi----Y~~~~~~l~~Le~~GlI~~~~~ 69 (180)
T 2rkh_A 14 VRLCALGTIASQ------PMRYSELAGSVRHFTSRI--------------MGPS----LELMGISIELLRYEGLVEAVDD 69 (180)
T ss_dssp HHHHHHHHHHHS------CEEHHHHHHHHHHHHHHH--------------HSCC----GGGTTCCTHHHHHTTSEECCC-
T ss_pred HHHHHHHHHHhC------CCCHHHHHHHHHHHhccC--------------CCCC----chhHHHHHHHHHHCCCeeeeec
Confidence 577777666544 244445555444454321 2233 44333 689999999993
Q ss_pred eecCCCc--eecChhHHHHHHHHHh
Q 006771 199 KSSCPAK--YMLTPGGREAARECLS 221 (632)
Q Consensus 199 ~~grP~r--Y~LTdeG~elA~~l~~ 221 (632)
..|+|-| |.|||+|++.-.++..
T Consensus 70 ~~~rpektvY~ITe~Gr~~l~~~l~ 94 (180)
T 2rkh_A 70 GQGMEDDAMLAISAAGRRELHSLLT 94 (180)
T ss_dssp -------CEEEECHHHHHHHHHHHS
T ss_pred CCCCCccceeeeCHHHHHHHHHHHH
Confidence 4578865 9999999998887653
No 97
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=77.05 E-value=2.1 Score=38.17 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=31.5
Q ss_pred ccchhhHHHHhcCcEeeecCCCceecChhHHHHHHHHHh
Q 006771 183 SGWSCMKTLITKGLVVKSSCPAKYMLTPGGREAARECLS 221 (632)
Q Consensus 183 taWsSmktLi~k~LV~~~grP~rY~LTdeG~elA~~l~~ 221 (632)
|....++.|.++|||.+... ..|.||+.|.+++..+..
T Consensus 38 tvs~~l~~Le~~Glv~r~~~-~~~~LT~~g~~~~~~~~~ 75 (142)
T 1on2_A 38 SVTKMVQKLDKDEYLIYEKY-RGLVLTSKGKKIGKRLVY 75 (142)
T ss_dssp HHHHHHHHHHHTTSEEEETT-TEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEeeC-ceEEEchhHHHHHHHHHH
Confidence 45677899999999987643 479999999999988654
No 98
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=76.43 E-value=2.7 Score=42.14 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=51.4
Q ss_pred CCchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee
Q 006771 121 RNSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS 200 (632)
Q Consensus 121 ~rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~ 200 (632)
...+-|.+|+.||... .++++=.||.+. .+.++- |-=..++.|.++|||.+.
T Consensus 32 lt~~q~~vL~~L~~~~---~~~~~~~el~~~---l~~~~~----------------------t~t~~l~rLe~~G~i~R~ 83 (250)
T 1p4x_A 32 MTIKEFILLTYLFHQQ---ENTLPFKKIVSD---LCYKQS----------------------DLVQHIKVLVKHSYISKV 83 (250)
T ss_dssp SCHHHHHHHHHHHSCS---CSEEEHHHHHHH---SSSCGG----------------------GTHHHHHHHHHTTSCEEE
T ss_pred CCHHHHHHHHHHHhcC---CCCcCHHHHHHH---HCCCHh----------------------hHHHHHHHHHHCCCEEec
Confidence 3456799999998742 246777777653 332211 122456899999999988
Q ss_pred cCCC-----ceecChhHHHHHHHHHh
Q 006771 201 SCPA-----KYMLTPGGREAARECLS 221 (632)
Q Consensus 201 grP~-----rY~LTdeG~elA~~l~~ 221 (632)
-.|. ...|||+|.++...+..
T Consensus 84 ~~~~DrR~~~i~LT~~G~~~~~~~~~ 109 (250)
T 1p4x_A 84 RSKIDERNTYISISEEQREKIAERVT 109 (250)
T ss_dssp ECSSSTTSEEEECCHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEEECHHHHHHHHHHHH
Confidence 7774 37899999998887664
No 99
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=76.24 E-value=1.9 Score=37.68 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=49.7
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
..-|.||..|+.. ++++-.||.+. .+ +.+ -+.-..++.|+++|||.+...
T Consensus 36 ~~~~~iL~~l~~~-----~~~t~~ela~~---l~-----~s~-----------------~~vs~~l~~Le~~glv~r~~~ 85 (142)
T 2fbi_A 36 EQQWRVIRILRQQ-----GEMESYQLANQ---AC-----ILR-----------------PSMTGVLARLERDGIVRRWKA 85 (142)
T ss_dssp HHHHHHHHHHHHH-----CSEEHHHHHHH---TT-----CCH-----------------HHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHc-----CCCCHHHHHHH---HC-----CCH-----------------hHHHHHHHHHHHCCCEEeecC
Confidence 3467889888764 35787887663 22 211 145667899999999998755
Q ss_pred CC-----ceecChhHHHHHHHHHh
Q 006771 203 PA-----KYMLTPGGREAARECLS 221 (632)
Q Consensus 203 P~-----rY~LTdeG~elA~~l~~ 221 (632)
|. .|.||++|.++...+..
T Consensus 86 ~~d~R~~~~~lT~~G~~~~~~~~~ 109 (142)
T 2fbi_A 86 PKDQRRVYVNLTEKGQQCFVSMSG 109 (142)
T ss_dssp TTEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCCeeEEEECHHHHHHHHHHHH
Confidence 52 49999999999988764
No 100
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=76.06 E-value=1.1 Score=40.67 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=27.7
Q ss_pred hhHHHHhcCcEeeecC----CC-ceecChhHHHHHHHHHh
Q 006771 187 CMKTLITKGLVVKSSC----PA-KYMLTPGGREAARECLS 221 (632)
Q Consensus 187 SmktLi~k~LV~~~gr----P~-rY~LTdeG~elA~~l~~ 221 (632)
-++.|.+.|||.+.-. |. .|.|||.|+++...+..
T Consensus 60 ~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~ 99 (131)
T 4a5n_A 60 QLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQ 99 (131)
T ss_dssp HHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHH
T ss_pred HHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHH
Confidence 4589999999987633 33 59999999999887764
No 101
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=76.04 E-value=2.1 Score=38.21 Aligned_cols=68 Identities=24% Similarity=0.300 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEee--ec
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVK--SS 201 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~--~g 201 (632)
.-|.||..|+.. .++|-.||.+... +.+ -|.-..++.|+++|||.+ ..
T Consensus 42 ~~~~iL~~l~~~-----~~~t~~eLa~~l~--------~~~-----------------~tvs~~l~~Le~~Glv~r~~~~ 91 (154)
T 2qww_A 42 QQLAMINVIYST-----PGISVADLTKRLI--------ITG-----------------SSAAANVDGLISLGLVVKLNKT 91 (154)
T ss_dssp HHHHHHHHHHHS-----TTEEHHHHHHHHT--------CCH-----------------HHHHHHHHHHHHTTSEEESCC-
T ss_pred HHHHHHHHHHHC-----CCCCHHHHHHHHC--------CCH-----------------HHHHHHHHHHHHCCCEEecCcC
Confidence 457899999864 3588888877532 111 145567799999999998 43
Q ss_pred CC-----CceecChhHHHHHHHHHh
Q 006771 202 CP-----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 202 rP-----~rY~LTdeG~elA~~l~~ 221 (632)
.| ..|.||++|.++...+..
T Consensus 92 ~~~d~R~~~~~LT~~G~~~~~~~~~ 116 (154)
T 2qww_A 92 IPNDSMDLTLKLSKKGEDLSKRSTA 116 (154)
T ss_dssp -CTTCTTCEEEECHHHHHHHHHHHS
T ss_pred CCCCCceeEeEECHHHHHHHHHHHh
Confidence 33 259999999999988763
No 102
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=75.97 E-value=2.1 Score=41.87 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=31.1
Q ss_pred cchhhHHHHhcCcEeeecCCCceecChhHHHHHHHHHhh
Q 006771 184 GWSCMKTLITKGLVVKSSCPAKYMLTPGGREAARECLSR 222 (632)
Q Consensus 184 aWsSmktLi~k~LV~~~grP~rY~LTdeG~elA~~l~~~ 222 (632)
.=..++.|.++|||.+... ..+.||++|+++|.++...
T Consensus 41 vs~~l~~Le~~GlV~r~~~-~~v~LT~~G~~~~~~~~~~ 78 (226)
T 2qq9_A 41 VSQTVARMERDGLVVVASD-RSLQMTPTGRTLATAVMRK 78 (226)
T ss_dssp HHHHHHHHHHTTSEEECTT-SBEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEeCC-CCeEECHHHHHHHHHHHHH
Confidence 4456799999999988654 5699999999999987753
No 103
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=75.87 E-value=1.9 Score=40.63 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=54.3
Q ss_pred CCchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee
Q 006771 121 RNSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS 200 (632)
Q Consensus 121 ~rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~ 200 (632)
...+-|.||..|+... .++++=.||.+.. +.+ + -+....++.|+++|||.+.
T Consensus 39 lt~~q~~vL~~L~~~~---~~~~t~~eLa~~l---~is-----~-----------------~tvs~~l~~Le~~GlV~r~ 90 (189)
T 3nqo_A 39 LTSRQYMTILSILHLP---EEETTLNNIARKM---GTS-----K-----------------QNINRLVANLEKNGYVDVI 90 (189)
T ss_dssp SCHHHHHHHHHHHHSC---GGGCCHHHHHHHH---TSC-----H-----------------HHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhcc---CCCcCHHHHHHHH---CCC-----H-----------------HHHHHHHHHHHHCCCEEec
Confidence 5566789999998753 2578888886642 211 1 1567788999999999987
Q ss_pred cCCC-----ceecChhHHHHHHHHHh
Q 006771 201 SCPA-----KYMLTPGGREAARECLS 221 (632)
Q Consensus 201 grP~-----rY~LTdeG~elA~~l~~ 221 (632)
..|. .+.||++|.+++..+..
T Consensus 91 ~~~~DrR~~~l~LT~~G~~~~~~~~~ 116 (189)
T 3nqo_A 91 PSPHDKRAINVKVTDLGKKVMVTCSR 116 (189)
T ss_dssp ECSSCSSCEEEEECHHHHHHHHHHHH
T ss_pred cCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 6653 48999999999998765
No 104
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=75.71 E-value=1.3 Score=38.68 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=50.3
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
..-|.||..|+.. ++++-.||.+... +.+ -|.-..++.|+++|||.+...
T Consensus 29 ~~~~~iL~~l~~~-----~~~~~~ela~~l~--------~s~-----------------~tvs~~l~~L~~~glv~~~~~ 78 (138)
T 3bpv_A 29 DAQVACLLRIHRE-----PGIKQDELATFFH--------VDK-----------------GTIARTLRRLEESGFIEREQD 78 (138)
T ss_dssp HHHHHHHHHHHHS-----TTCBHHHHHHHHT--------CCH-----------------HHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHc-----CCCCHHHHHHHHC--------CCH-----------------HHHHHHHHHHHHCCCEEeecC
Confidence 3467889888764 4688888877532 111 145667899999999998654
Q ss_pred C-----CceecChhHHHHHHHHHh
Q 006771 203 P-----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 203 P-----~rY~LTdeG~elA~~l~~ 221 (632)
| ..|.||++|.++...+..
T Consensus 79 ~~d~R~~~~~lT~~G~~~~~~~~~ 102 (138)
T 3bpv_A 79 PENRRRYILEVTRRGEEIIPLILK 102 (138)
T ss_dssp TTEEEEEEEEECHHHHHTHHHHHH
T ss_pred CCCceeEEeeECHhHHHHHHHHHH
Confidence 4 348999999999987664
No 105
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=75.60 E-value=1.6 Score=39.93 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=29.7
Q ss_pred ccchhhHHHHhcCcEeeecC---CC-ceecChhHHHHHHHHHh
Q 006771 183 SGWSCMKTLITKGLVVKSSC---PA-KYMLTPGGREAARECLS 221 (632)
Q Consensus 183 taWsSmktLi~k~LV~~~gr---P~-rY~LTdeG~elA~~l~~ 221 (632)
+--..++.|.++|||.+.-. |. .|.||+.|.++...+..
T Consensus 53 tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~~~l~~ 95 (146)
T 2f2e_A 53 ILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFPLLVA 95 (146)
T ss_dssp HHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHHHHHHH
Confidence 34556799999999987643 32 49999999998776553
No 106
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=75.48 E-value=0.66 Score=42.52 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=27.9
Q ss_pred cchHHHHHHHhcCCCCCHHHHHHHHHh--cCCHHHHH
Q 006771 558 TVSDVFAVQLMQVPQVTEEIAITVLDL--YPTLLSLA 592 (632)
Q Consensus 558 Tv~e~f~~mLm~IpGVs~ekA~~I~~~--ypTp~~L~ 592 (632)
.+...-.+.|+++|||++.+|.+|+++ |.++.+|.
T Consensus 56 niNtA~~~eL~~LpGiGp~~A~~II~~GpF~svedL~ 92 (134)
T 1s5l_U 56 DLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVL 92 (134)
T ss_dssp ETTTSCGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGG
T ss_pred eCcccCHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 333334567899999999999999987 88888776
No 107
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=74.91 E-value=3 Score=42.96 Aligned_cols=45 Identities=7% Similarity=0.108 Sum_probs=35.3
Q ss_pred HHHHhc--------CCCCCHHHHHHHHHhcCCHHHHHHHHhhc-cccHHHHHHHhh
Q 006771 564 AVQLMQ--------VPQVTEEIAITVLDLYPTLLSLAHAYSIL-EGDVCAQEEMLW 610 (632)
Q Consensus 564 ~~mLm~--------IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~-~~~~~~~e~mL~ 610 (632)
...||. |||||+..|..+++.|+|+..++++..+. .+ +.++.|..
T Consensus 194 ~~~L~GD~sDniPGVpGIG~KTA~kLL~~~gsle~i~~~~~~~~~~--~~~~~L~~ 247 (290)
T 1exn_A 194 LKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQ--KYIQNLNA 247 (290)
T ss_dssp HHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCSHHHHHHHCSCSCCC--HHHHHHHT
T ss_pred HHHhcCCCcCCCCCCCcCCHhHHHHHHHHcCCHHHHHHHHHHhccH--HHHHHHHH
Confidence 446775 89999999999999999999999988877 33 44444443
No 108
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=74.71 E-value=2 Score=37.69 Aligned_cols=36 Identities=31% Similarity=0.278 Sum_probs=28.6
Q ss_pred cchhhHHHHhcCcEeee--cCCCceecChhHHHHHHHH
Q 006771 184 GWSCMKTLITKGLVVKS--SCPAKYMLTPGGREAAREC 219 (632)
Q Consensus 184 aWsSmktLi~k~LV~~~--grP~rY~LTdeG~elA~~l 219 (632)
-.-.|++|.++|+|-+. .|=--|.||+||.+--+..
T Consensus 42 Vik~mqSLkSrGyVkeqFaWrh~Yw~LTnEGieyLR~y 79 (105)
T 3u5c_K 42 VIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREY 79 (105)
T ss_dssp HHHHHHHHHHTSSEEEECTTTCCEEEECHHHHHHHHHH
T ss_pred HHHHHhcccccceeccEecceEEEEEEchhhHHHHHHH
Confidence 46678899999999876 4445799999999975553
No 109
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=74.15 E-value=2.5 Score=37.65 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+.. .+++-.||.+.. +.+ + -+.-..++.|+++|||.+...|
T Consensus 38 ~~~~iL~~l~~~-----~~~t~~ela~~l---~~s-----~-----------------~tvs~~l~~Le~~glv~r~~~~ 87 (155)
T 1s3j_A 38 AQLFVLASLKKH-----GSLKVSEIAERM---EVK-----P-----------------SAVTLMADRLEQKNLIARTHNT 87 (155)
T ss_dssp HHHHHHHHHHHH-----SEEEHHHHHHHH---TSC-----H-----------------HHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHc-----CCCCHHHHHHHH---CCC-----H-----------------HHHHHHHHHHHHCCCEeecCCC
Confidence 457888888764 357777776642 211 1 1456678999999999987554
Q ss_pred -----CceecChhHHHHHHHHHh
Q 006771 204 -----AKYMLTPGGREAARECLS 221 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~~ 221 (632)
..|.||++|.++...+..
T Consensus 88 ~d~R~~~~~lT~~G~~~~~~~~~ 110 (155)
T 1s3j_A 88 KDRRVIDLSLTDEGDIKFEEVLA 110 (155)
T ss_dssp SCTTSEEEEECHHHHHHHHHHHH
T ss_pred CCCceEEEEECHHHHHHHHHHHH
Confidence 248999999999987664
No 110
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=74.09 E-value=2.4 Score=37.33 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+.. ++++-.||.+.. + +.+ -+....++.|+++|||.+...|
T Consensus 34 ~~~~iL~~l~~~-----~~~~~~~la~~l---~-----~s~-----------------~tvs~~l~~L~~~glv~r~~~~ 83 (145)
T 2a61_A 34 AQFDILQKIYFE-----GPKRPGELSVLL---G-----VAK-----------------STVTGLVKRLEADGYLTRTPDP 83 (145)
T ss_dssp HHHHHHHHHHHH-----CCBCHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHHc-----CCCCHHHHHHHH---C-----CCc-----------------hhHHHHHHHHHHCCCeeecCCC
Confidence 457889888874 368888887753 2 211 1566788999999999986544
Q ss_pred C-----ceecChhHHHHHHHHHh
Q 006771 204 A-----KYMLTPGGREAARECLS 221 (632)
Q Consensus 204 ~-----rY~LTdeG~elA~~l~~ 221 (632)
. .|.||++|.++...+..
T Consensus 84 ~d~r~~~~~lT~~G~~~~~~~~~ 106 (145)
T 2a61_A 84 ADRRAYFLVITRKGEEVIEKVIE 106 (145)
T ss_dssp TEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCceEEEEECHHHHHHHHHHHH
Confidence 2 48999999999988664
No 111
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=73.81 E-value=2.1 Score=37.77 Aligned_cols=68 Identities=19% Similarity=0.226 Sum_probs=47.2
Q ss_pred CchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeec
Q 006771 122 NSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSS 201 (632)
Q Consensus 122 rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~g 201 (632)
...-|.||..|+.. + ++=.||-+... +.+ -|.-.-++.|.++|||.+..
T Consensus 37 t~~~~~iL~~l~~~-----~-~t~~eLa~~l~--------~s~-----------------~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 37 TNTQEHILMLLSEE-----S-LTNSELARRLN--------VSQ-----------------AAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp CHHHHHHHHHHTTC-----C-CCHHHHHHHHT--------CCH-----------------HHHHHHHHHHHHTTSEEC--
T ss_pred CHHHHHHHHHHHhC-----C-CCHHHHHHHHC--------CCH-----------------HHHHHHHHHHHHCCCeEecc
Confidence 44568888888643 3 88888877542 111 14556789999999999754
Q ss_pred CC-----CceecChhHHHHHHHHH
Q 006771 202 CP-----AKYMLTPGGREAARECL 220 (632)
Q Consensus 202 rP-----~rY~LTdeG~elA~~l~ 220 (632)
.| ..|.||++|.++...+.
T Consensus 86 ~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 86 DSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp --------CCEECGGGHHHHHHHH
T ss_pred CCCCCceeEEEECHhHHHHHHHHH
Confidence 43 46999999999999875
No 112
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=73.67 E-value=3.4 Score=32.76 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=36.5
Q ss_pred hCCCCCchhHHHHHHHHHHHHhccCCCCCChhhhhccccchHHHHHHHHHHhhc
Q 006771 36 ETPKGLSENIDMTLSKAYNNICDAKNPIKTLKDLSQVKGVGKWILKLMQEFFET 89 (632)
Q Consensus 36 e~~~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~l~~lkG~G~~i~~~L~~~~~~ 89 (632)
....|++.+.+...-+.+.++.+- --.++.+|..++|||++.+..|..++.+
T Consensus 17 ~~i~giG~~~a~~Ll~~fgs~~~l--~~a~~~~L~~i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 17 EGLPHVSATLARRLLKHFGSVERV--FTASVAELMKVEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHH--HHCCHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHH--HhCCHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 334577776666666665544331 1125789999999999999999888764
No 113
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=73.12 E-value=2.6 Score=35.15 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=37.9
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHhccCCCCCChhhhhccccchHHHHHHHHHHhhc
Q 006771 32 QEMAETPKGLSENIDMTLSKAYNNICDAKNPIKTLKDLSQVKGVGKWILKLMQEFFET 89 (632)
Q Consensus 32 ~e~~e~~~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~l~~lkG~G~~i~~~L~~~~~~ 89 (632)
..+.....|++.+.+...-+.+.++.+- ---++.+|..++|||++.+..|..++.+
T Consensus 18 ~~~L~~IpgIG~~~A~~Ll~~fgsl~~l--~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 18 TECLTTVKSVNKTDSQTLLTTFGSLEQL--IAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHHHTTSSSCCHHHHHHHHHHTCBHHHH--HHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHcCCCCCHHHHHHHHHHCCCHHHH--HhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3334445588776666665555444321 1235689999999999999999988864
No 114
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=72.91 E-value=3.7 Score=34.44 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=37.2
Q ss_pred HhCCCCCchhHHHHHHHHHHHHhccCCCCCChhhhhccccchHHHHHHHHHHhhc
Q 006771 35 AETPKGLSENIDMTLSKAYNNICDAKNPIKTLKDLSQVKGVGKWILKLMQEFFET 89 (632)
Q Consensus 35 ~e~~~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~l~~lkG~G~~i~~~L~~~~~~ 89 (632)
.....|++.+.+...-+.+.++.+- --.++.+|..++|||++.+..|..++.+
T Consensus 34 L~~IpgIG~~~A~~Ll~~fgs~~~l--~~as~~eL~~i~GIG~~~a~~I~~~l~~ 86 (91)
T 2a1j_B 34 LTTVKSVNKTDSQTLLTTFGSLEQL--IAASREDLALCPGLGPQKARRLFDVLHE 86 (91)
T ss_dssp HTTSTTCCHHHHHHHHHHHSSHHHH--HSCCHHHHHTSSSCCSHHHHHHHHHHHS
T ss_pred HHcCCCCCHHHHHHHHHHCCCHHHH--HhCCHHHHHhCCCCCHHHHHHHHHHHhh
Confidence 3334578777666666665554331 1235789999999999999999988853
No 115
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=72.75 E-value=8.1 Score=37.95 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=27.1
Q ss_pred cchHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHH
Q 006771 558 TVSDVFAVQLMQVPQVTEEIAITVLDLYPTLLSLAHAY 595 (632)
Q Consensus 558 Tv~e~f~~mLm~IpGVs~ekA~~I~~~ypTp~~L~~Ay 595 (632)
+-+++|. .|..|+||++..|.+|++.|+. ..|.+|-
T Consensus 82 ~Er~lf~-~L~sv~GIGpk~A~~Ils~~~~-~~l~~aI 117 (212)
T 2ztd_A 82 ETRDLFL-TLLSVSGVGPRLAMAALAVHDA-PALRQVL 117 (212)
T ss_dssp HHHHHHH-HHHTSTTCCHHHHHHHHHHSCH-HHHHHHH
T ss_pred HHHHHHH-HhcCcCCcCHHHHHHHHHhCCH-HHHHHHH
Confidence 3456655 6778999999999999999864 4555443
No 116
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=72.41 E-value=2.7 Score=39.64 Aligned_cols=76 Identities=22% Similarity=0.196 Sum_probs=44.5
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee--
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS-- 200 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~-- 200 (632)
|-.++||-.|... .|+=-||...-+.....-+. .++... -..++.|.++|||...
T Consensus 2 ~l~~~iL~lL~~~------~~~gyel~~~l~~~~~~~~~--------------~s~~~l---y~~L~~Le~~GlI~~~~~ 58 (179)
T 1yg2_A 2 SLPHVILTVLSTR------DATGYDITKEFSASIGYFWK--------------ASHQQV---YRELNKMGEQGLVTCVLE 58 (179)
T ss_dssp CHHHHHHHHHHHC------CBCHHHHHHHHTTGGGGTCC--------------CCHHHH---HHHHHHHHHTTSEEECCC
T ss_pred chHHHHHHHHhcC------CCCHHHHHHHHHHHhCCccC--------------CCcCcH---HHHHHHHHHCCCeEEEee
Confidence 3467888888642 36667777765432110001 111122 2356889999999743
Q ss_pred ---cCC-C-ceecChhHHHHHHHHHh
Q 006771 201 ---SCP-A-KYMLTPGGREAARECLS 221 (632)
Q Consensus 201 ---grP-~-rY~LTdeG~elA~~l~~ 221 (632)
|+| . .|.|||+|++.-.....
T Consensus 59 ~~~~~~~r~~Y~lT~~G~~~l~~~~~ 84 (179)
T 1yg2_A 59 PQEGKPDRKVYSITQAGRSALGEWFD 84 (179)
T ss_dssp ---------CEEECHHHHHHHHHHHH
T ss_pred cCCCCCCceEEEeChHHHHHHHHHHh
Confidence 444 3 49999999998877654
No 117
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=72.33 E-value=2.7 Score=41.06 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=31.6
Q ss_pred ccchhhHHHHhcCcEeeecCCCceecChhHHHHHHHHHhhc
Q 006771 183 SGWSCMKTLITKGLVVKSSCPAKYMLTPGGREAARECLSRS 223 (632)
Q Consensus 183 taWsSmktLi~k~LV~~~grP~rY~LTdeG~elA~~l~~~~ 223 (632)
|.-.-|+.|.++|||...- .-..|||+|+++|..+..+.
T Consensus 46 SV~~~lkkL~e~GLV~~~~--~Gv~LTe~G~~~A~~i~~rh 84 (200)
T 2p8t_A 46 SVRTLLRKLSHLDIIRSKQ--RGHFLTLKGKEIRDKLLSMF 84 (200)
T ss_dssp HHHHHHHHHHHTTSEEEC----CEEECHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHCCCEEEeC--CCeEECHHHHHHHHHHHHHH
Confidence 5677889999999995443 57899999999999998753
No 118
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=71.21 E-value=1.2 Score=36.36 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=36.2
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHhccCCCCCChhhhhccccchHHHHHHHHHHhh
Q 006771 34 MAETPKGLSENIDMTLSKAYNNICDAKNPIKTLKDLSQVKGVGKWILKLMQEFFE 88 (632)
Q Consensus 34 ~~e~~~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~l~~lkG~G~~i~~~L~~~~~ 88 (632)
......|+..+.+...-+++.++.+-- --++.+|..++|||++++..|..++.
T Consensus 25 ~L~~I~gIG~~~A~~Ll~~fgsl~~l~--~a~~eeL~~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 25 SLETIEGVGPKRRQMLLKYMGGLQGLR--NASVEEIAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp GGGGCTTCSSSHHHHHHHHHSCHHHHH--HCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred HHhcCCCCCHHHHHHHHHHcCCHHHHH--HCCHHHHHHCCCCCHHHHHHHHHHHh
Confidence 334445777766666666665543321 12678999999999999999988774
No 119
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=70.92 E-value=3.4 Score=47.27 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=38.3
Q ss_pred cCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhhcCCcccHHHHhhhhhhh
Q 006771 569 QVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQSNNAVSASASRNIFQLV 629 (632)
Q Consensus 569 ~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~~~~~IG~~lSr~Iy~~v 629 (632)
.||||++..|..|+++|+|+..|.+|- .+++..- .=||+.+++.|+.+|
T Consensus 516 gi~~VG~~~Ak~La~~Fgsl~~l~~As---------~eeL~~i---~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 516 GIREVGEATAAGLAAYFGTLEALEAAS---------IEELQKV---PDVGIVVASHVHNFF 564 (671)
T ss_dssp TCTTCCHHHHHHHHHHHCSHHHHHTCC---------HHHHTTS---TTCCHHHHHHHHHHH
T ss_pred cccCccHHHHHHHHHHcCCHHHHHhCC---------HHHHhhc---CCCCHHHHHHHHHHH
Confidence 899999999999999999999987553 1233322 228999999999854
No 120
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=70.44 E-value=3.5 Score=40.37 Aligned_cols=69 Identities=16% Similarity=0.099 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhcCCCCCCCCCH--HHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeec
Q 006771 124 VAYALLITLYRGTTNGNEFMRK--QDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSS 201 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK--~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~g 201 (632)
..+-+|.+||..... +++- .||-+ ..+.+ + -|.-..++.|.++|||.+..
T Consensus 7 ~~e~~L~~L~~l~~~---~~~~~~~~La~---~l~vs-----~-----------------~tvs~~l~~Le~~GlV~r~~ 58 (230)
T 1fx7_A 7 TTEMYLRTIYDLEEE---GVTPLRARIAE---RLDQS-----G-----------------PTVSQTVSRMERDGLLRVAG 58 (230)
T ss_dssp HHHHHHHHHHHHHHH---TSCCCHHHHHH---HHTCC-----H-----------------HHHHHHHHHHHHTTSEEECT
T ss_pred HHHHHHHHHHHHhhc---CCCCcHHHHHH---HHCcC-----H-----------------HHHHHHHHHHHHCCCEEEeC
Confidence 456778888876442 3443 66654 33322 1 13455779999999999865
Q ss_pred CCCceecChhHHHHHHHHHh
Q 006771 202 CPAKYMLTPGGREAARECLS 221 (632)
Q Consensus 202 rP~rY~LTdeG~elA~~l~~ 221 (632)
. ..+.||++|++++..+..
T Consensus 59 ~-~~v~LT~~G~~~~~~~~~ 77 (230)
T 1fx7_A 59 D-RHLELTEKGRALAIAVMR 77 (230)
T ss_dssp T-SCEEECHHHHHHHHHHHH
T ss_pred C-ccEEECHHHHHHHHHHHH
Confidence 5 479999999999987654
No 121
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=70.28 E-value=10 Score=31.78 Aligned_cols=68 Identities=15% Similarity=0.258 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCchhHHHHH-HHHHHHHhc-cCCCCCChhhhhccccchHHHHHH--------HHHHh
Q 006771 18 AENEELAMYMLQKRQEMAETPKGLSENIDMTL-SKAYNNICD-AKNPIKTLKDLSQVKGVGKWILKL--------MQEFF 87 (632)
Q Consensus 18 ~~N~~l~~~~~ew~~e~~e~~~g~~~~~~~ty-~kA~~sl~~-~p~~~~~~k~l~~lkG~G~~i~~~--------L~~~~ 87 (632)
..+..+..-|.+|+++.+.. .++.- ..++ .+++..|+. .| .+..++.+|+|||+.-.++ +++++
T Consensus 10 ~~~~~l~~~L~~wR~~~A~~-~~vpp--~~If~D~tL~eiA~~~P---~t~~eL~~i~Gvg~~k~~~yG~~~l~~I~~~~ 83 (89)
T 1wud_A 10 NYDRKLFAKLRKLRKSIADE-SNVPP--YVVFNDATLIEMAEQMP---ITASEMLSVNGVGMRKLERFGKPFMALIRAHV 83 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHHH-HTSCH--HHHCCHHHHHHHHHHCC---CSHHHHHTSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCc--ceeeCHHHHHHHHHhCC---CCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999873 15532 2233 466777766 44 6889999999999865554 45577
Q ss_pred hcCC
Q 006771 88 ETDS 91 (632)
Q Consensus 88 ~~~~ 91 (632)
.+++
T Consensus 84 ~e~~ 87 (89)
T 1wud_A 84 DGDD 87 (89)
T ss_dssp TTC-
T ss_pred HhcC
Confidence 6665
No 122
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=69.97 E-value=3.2 Score=39.91 Aligned_cols=70 Identities=16% Similarity=0.070 Sum_probs=51.0
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
..-|.||..|+.. .++|-.||.+.. + +.+ -|.-..++.|+++|||.+...
T Consensus 48 ~~q~~iL~~L~~~-----~~~t~~eLa~~l---~-----i~~-----------------stvs~~l~~Le~~GlV~r~~~ 97 (207)
T 2fxa_A 48 INEHHILWIAYQL-----NGASISEIAKFG---V-----MHV-----------------STAFNFSKKLEERGYLRFSKR 97 (207)
T ss_dssp HHHHHHHHHHHHH-----TSEEHHHHHHHT---T-----CCH-----------------HHHHHHHHHHHHHTSEEEECC
T ss_pred HHHHHHHHHHHHC-----CCcCHHHHHHHH---C-----CCH-----------------HHHHHHHHHHHHCCCEEEecC
Confidence 4467899999875 358878777742 2 111 145667899999999998766
Q ss_pred CC-----ceecChhHHHHHHHHHhh
Q 006771 203 PA-----KYMLTPGGREAARECLSR 222 (632)
Q Consensus 203 P~-----rY~LTdeG~elA~~l~~~ 222 (632)
|. .+.||++|++++..+...
T Consensus 98 ~~DrR~~~l~LT~~G~~~~~~~~~~ 122 (207)
T 2fxa_A 98 LNDKRNTYVQLTEEGTEVFWSLLEE 122 (207)
T ss_dssp ------CEEEECHHHHHHHHHHHHH
T ss_pred CCCCceEEEEECHHHHHHHHHHHHH
Confidence 63 489999999999998754
No 123
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=69.42 E-value=4.9 Score=36.77 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=28.0
Q ss_pred CCCCCChhhhhccccchHHHHHHHHHHhhcCCC
Q 006771 60 KNPIKTLKDLSQVKGVGKWILKLMQEFFETDSG 92 (632)
Q Consensus 60 p~~~~~~k~l~~lkG~G~~i~~~L~~~~~~~~~ 92 (632)
-.||++..|+++++|||++..+.|++|-..-..
T Consensus 82 ~GpF~svedL~~V~GIg~k~~e~l~~~~~~~tv 114 (134)
T 1s5l_U 82 NAPYESVEDVLNIPGLTERQKQILRENLEHFTV 114 (134)
T ss_dssp TCCCSSGGGGGGCTTCCHHHHHHHHHHHTTEEC
T ss_pred cCCCCCHHHHHhCCCCCHHHHHHHHHhhcceee
Confidence 579999999999999999998888877655444
No 124
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=69.02 E-value=9.2 Score=31.02 Aligned_cols=59 Identities=20% Similarity=0.375 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCchhHHHHH-HHHHHHHhccCCCCCChhhhhccccchHHHHHH
Q 006771 19 ENEELAMYMLQKRQEMAETPKGLSENIDMTL-SKAYNNICDAKNPIKTLKDLSQVKGVGKWILKL 82 (632)
Q Consensus 19 ~N~~l~~~~~ew~~e~~e~~~g~~~~~~~ty-~kA~~sl~~~p~~~~~~k~l~~lkG~G~~i~~~ 82 (632)
.+..+..-|.+|+++.+.. .++.. ..++ .+++..|+... =.+..++.+|+|||++-.++
T Consensus 3 ~d~~l~~~L~~wR~~~A~~-~~vpp--~~I~~d~~L~~iA~~~--P~t~~eL~~i~Gvg~~k~~~ 62 (77)
T 2rhf_A 3 HNADLSEALRELRRELMKE-TGYSA--FVVFTNATLEALAARQ--PRTLAELAEVPGLGEKRIEA 62 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHH-HCCCH--HHHCCHHHHHHHHHHC--CCSHHHHTTSTTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-cCCCc--ceeeCHHHHHHHHHhC--CCCHHHHhhCCCCCHHHHHH
Confidence 3567889999999999873 15532 2233 45677776632 26889999999999877765
No 125
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=68.46 E-value=4.2 Score=39.57 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=46.5
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee--
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS-- 200 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~-- 200 (632)
|.-++||-.|.. +-++=-||+..-+.....-+. .++...| ..++.|.++|||...
T Consensus 36 s~r~~IL~lL~~------~p~~GYeL~~~l~~~~~~~~~--------------~s~g~lY---~~L~rLe~~GlI~~~~~ 92 (204)
T 3l9f_A 36 QGKDIILGILSK------KERSGYEINDILQNQLSYFYD--------------GTYGMIY---PTLRKLEKDGKITKEVV 92 (204)
T ss_dssp CHHHHHHHHTSS------CCEEHHHHHHHHHHTSTTTEE--------------CCTTCHH---HHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHc------CCCCHHHHHHHHHHHhCCccC--------------CCcchHH---HHHHHHHHCCCeEEEee
Confidence 335566655521 236667787776654211111 1222334 467899999999632
Q ss_pred ---cCCCc--eecChhHHHHHHHHHh
Q 006771 201 ---SCPAK--YMLTPGGREAARECLS 221 (632)
Q Consensus 201 ---grP~r--Y~LTdeG~elA~~l~~ 221 (632)
|+|.| |.|||+|++.-.+...
T Consensus 93 ~~~~~p~rk~Y~iT~~Gr~~l~~~l~ 118 (204)
T 3l9f_A 93 IQDGRPNKNIYAITESGKKELASYLQ 118 (204)
T ss_dssp CCTTSCCEEEEEECHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEChHHHHHHHHHHh
Confidence 56643 9999999998877654
No 126
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=66.88 E-value=1.4 Score=38.96 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=47.3
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecC
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSC 202 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~gr 202 (632)
..-|.||..|+.. ++++-.||.+. .+ +.+ -+.-..++.|.++|||.+...
T Consensus 40 ~~~~~iL~~l~~~-----~~~~~~~la~~---l~-----~~~-----------------~tvs~~l~~L~~~glv~r~~~ 89 (147)
T 1z91_A 40 YPQYLALLLLWEH-----ETLTVKKMGEQ---LY-----LDS-----------------GTLTPMLKRMEQQGLITRKRS 89 (147)
T ss_dssp HHHHHHHHHHHHH-----SEEEHHHHHHT---TT-----CCH-----------------HHHHHHHHHHHHHTSEECCBC
T ss_pred HHHHHHHHHHHHC-----CCCCHHHHHHH---HC-----CCc-----------------CcHHHHHHHHHHCCCEEeccC
Confidence 3567889888865 25777777763 11 211 134556799999999987644
Q ss_pred C-----CceecChhHHHHHHHHH
Q 006771 203 P-----AKYMLTPGGREAARECL 220 (632)
Q Consensus 203 P-----~rY~LTdeG~elA~~l~ 220 (632)
| ..+.||++|.+++..+.
T Consensus 90 ~~d~R~~~~~LT~~G~~~~~~~~ 112 (147)
T 1z91_A 90 EEDERSVLISLTEDGALLKEKAV 112 (147)
T ss_dssp SSCTTSBEEEECHHHHSGGGGTT
T ss_pred CCCCCeeEEEECHhHHHHHHHHH
Confidence 3 34899999999877653
No 127
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=66.82 E-value=1.8 Score=38.69 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCC
Q 006771 124 VAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCP 203 (632)
Q Consensus 124 GaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP 203 (632)
.-|.||..|+.. ++++-.||.+.. + +.+ -+.-..++.|+++|||.+...|
T Consensus 48 ~~~~iL~~l~~~-----~~~t~~ela~~l---~-----~s~-----------------~tvs~~l~~Le~~glv~r~~~~ 97 (153)
T 2pex_A 48 PQYLVMLVLWET-----DERSVSEIGERL---Y-----LDS-----------------ATLTPLLKRLQAAGLVTRTRAA 97 (153)
T ss_dssp HHHHHHHHHHHS-----CSEEHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHTTSEEEEC--
T ss_pred HHHHHHHHHHhC-----CCcCHHHHHHHh---C-----CCc-----------------ccHHHHHHHHHHCCCEeecCCc
Confidence 457788888763 358888877642 2 111 1345567999999999986544
Q ss_pred -----CceecChhHHHHHHHHH
Q 006771 204 -----AKYMLTPGGREAARECL 220 (632)
Q Consensus 204 -----~rY~LTdeG~elA~~l~ 220 (632)
..|.||++|.++...+.
T Consensus 98 ~d~R~~~~~lT~~G~~~~~~~~ 119 (153)
T 2pex_A 98 SDERQVIIALTETGRALRSKAG 119 (153)
T ss_dssp -----CEEEECHHHHHGGGGST
T ss_pred ccCCeeEeeECHHHHHHHHHHH
Confidence 35899999999876543
No 128
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=66.42 E-value=4.3 Score=46.48 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=37.5
Q ss_pred cCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhhcCCcccHHHHhhhhhhh
Q 006771 569 QVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQSNNAVSASASRNIFQLV 629 (632)
Q Consensus 569 ~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~~~~~IG~~lSr~Iy~~v 629 (632)
.||||+...|..|+++|+|+..|++|- .++|..- .. ||+..++.|+.+|
T Consensus 511 GI~~VG~~~Ak~La~~Fgsl~~l~~As---------~eeL~~I--~G-IG~~~A~sI~~ff 559 (667)
T 1dgs_A 511 GLPGVGEVLARNLARRFGTMDRLLEAS---------LEELIEV--EE-VGELTARAILETL 559 (667)
T ss_dssp TCSSCCHHHHHHHHHTTSBHHHHTTCC---------HHHHHTS--TT-CCHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHHHcCCHHHHHhCC---------HHHHHhc--cC-cCHHHHHHHHHHH
Confidence 899999999999999999998886442 2233322 23 8999999998754
No 129
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=65.62 E-value=3.9 Score=35.30 Aligned_cols=76 Identities=11% Similarity=0.210 Sum_probs=52.9
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEee
Q 006771 120 QRNSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVK 199 (632)
Q Consensus 120 ~~rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~ 199 (632)
.....-|.||..|+.. +++|-.||.+....- . .+.+ -|.=.-++.|+++|||.+
T Consensus 7 ~lt~~~~~vL~~l~~~-----~~~t~~ela~~l~~~--~--~~s~-----------------~tv~~~l~~L~~~Glv~r 60 (123)
T 1okr_A 7 EISSAEWEVMNIIWMK-----KYASANNIIEEIQMQ--K--DWSP-----------------KTIRTLITRLYKKGFIDR 60 (123)
T ss_dssp CCCHHHHHHHHHHHHH-----SSEEHHHHHHHHHHH--C--CCCH-----------------HHHHHHHHHHHHHTSEEE
T ss_pred cCCHHHHHHHHHHHhC-----CCcCHHHHHHHHhcc--C--CCcH-----------------hhHHHHHHHHHHCCCeEE
Confidence 4455678999999863 468999999876531 1 0111 144556789999999987
Q ss_pred e--cCCCc-eecChhHHHHHHHHHh
Q 006771 200 S--SCPAK-YMLTPGGREAARECLS 221 (632)
Q Consensus 200 ~--grP~r-Y~LTdeG~elA~~l~~ 221 (632)
. ||... +.||++|.+++..+..
T Consensus 61 ~~~~rr~~~~~lT~~g~~~~~~~~~ 85 (123)
T 1okr_A 61 KKDNKIFQYYSLVEESDIKYKTSKN 85 (123)
T ss_dssp EEETTEEEEEESSCHHHHHHHHHHH
T ss_pred EecCCeEEEEEecCHHHHHHHHHHH
Confidence 5 44344 4799999999887654
No 130
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=64.95 E-value=1.6 Score=37.76 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=23.1
Q ss_pred HHHhcCCCCCHHHHHHHHHh--cCCHHHHH
Q 006771 565 VQLMQVPQVTEEIAITVLDL--YPTLLSLA 592 (632)
Q Consensus 565 ~mLm~IpGVs~ekA~~I~~~--ypTp~~L~ 592 (632)
..|+.||||++.+|.+|+++ |.++.+|.
T Consensus 26 ~eL~~lpGIG~~~A~~IV~~GpF~s~edL~ 55 (97)
T 3arc_U 26 AAFIQYRGLYPTLAKLIVKNAPYESVEDVL 55 (97)
T ss_dssp GGGGGSTTCTTHHHHHHHHHCCCSSGGGGG
T ss_pred HHHhHCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 46999999999999999985 66666654
No 131
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=64.59 E-value=12 Score=32.39 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCchhHHHHH-HHHHHHHhc-cCCCCCChhhhhccccchHHHHHH-------HHHHhhc
Q 006771 19 ENEELAMYMLQKRQEMAETPKGLSENIDMTL-SKAYNNICD-AKNPIKTLKDLSQVKGVGKWILKL-------MQEFFET 89 (632)
Q Consensus 19 ~N~~l~~~~~ew~~e~~e~~~g~~~~~~~ty-~kA~~sl~~-~p~~~~~~k~l~~lkG~G~~i~~~-------L~~~~~~ 89 (632)
.+..|..-|.+|+.+.+.. .++. -.+++ .+.+.-|+. .| .+..+|.+|.|||++-+++ +.+||.+
T Consensus 13 ~d~~l~~~L~~wR~~~A~~-~~vP--~y~If~D~tL~emA~~~P---~t~~eL~~I~Gvg~~K~~~y~~~L~~I~~~~~~ 86 (103)
T 2e1f_A 13 TQIVLYGKLVEARQKHANK-MDVP--PAILATNKILVDMAKMRP---TTVENVKRIDGVSEGKAAMLAPLLEVIKHFCQT 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTSC--HHHHCCHHHHHHHHHHCC---CSHHHHTTSTTCCHHHHHHTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-cCCC--CCeeECHHHHHHHHHhCC---CCHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999998873 2553 22333 355777766 45 4789999999999876654 4457877
Q ss_pred CCCC
Q 006771 90 DSGG 93 (632)
Q Consensus 90 ~~~~ 93 (632)
++..
T Consensus 87 ~~i~ 90 (103)
T 2e1f_A 87 NSVQ 90 (103)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 7665
No 132
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=64.39 E-value=4.5 Score=34.41 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=30.4
Q ss_pred ccchhhHHHHhcCcEee--ecCCCceecChhHHHHHHHHH
Q 006771 183 SGWSCMKTLITKGLVVK--SSCPAKYMLTPGGREAARECL 220 (632)
Q Consensus 183 taWsSmktLi~k~LV~~--~grP~rY~LTdeG~elA~~l~ 220 (632)
|...-++.|.++|||.. .|+...|.||++|.+.+....
T Consensus 50 tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~ 89 (114)
T 2oqg_A 50 AIAKHLNALQACGLVESVKVGREIRYRALGAELNKTARTL 89 (114)
T ss_dssp HHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHHH
Confidence 56778899999999975 366557999999998776544
No 133
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=63.94 E-value=16 Score=32.21 Aligned_cols=69 Identities=16% Similarity=0.274 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCchhHHHHH-HHHHHHHhc-cCCCCCChhhhhccccchHH-------HHHHHHHHhhcC
Q 006771 20 NEELAMYMLQKRQEMAETPKGLSENIDMTL-SKAYNNICD-AKNPIKTLKDLSQVKGVGKW-------ILKLMQEFFETD 90 (632)
Q Consensus 20 N~~l~~~~~ew~~e~~e~~~g~~~~~~~ty-~kA~~sl~~-~p~~~~~~k~l~~lkG~G~~-------i~~~L~~~~~~~ 90 (632)
+..|..-|.+|+.+.+.. .++. -.+++ .+.+.-|+. .| .+..+|.+|.|||++ +++.+++||.++
T Consensus 21 d~~l~~~L~~wR~~~A~~-~~vP--~y~If~D~tL~emA~~~P---~t~~eL~~I~Gvg~~K~~~y~~~L~~I~~~~~~~ 94 (113)
T 2dgz_A 21 QIVLYGKLVEARQKHANK-MDVP--PAILATNKILVDMAKMRP---TTVENVKRIDGVSEGKAAMLAPLWEVIKHFCQTN 94 (113)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCC--HHHHCCHHHHHHHHHHCC---CSHHHHHHSSSCCTTGGGGGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH-hCCC--CCeeECHHHHHHHHHhCC---CCHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999874 2663 23334 355777766 45 478899999999954 445566788888
Q ss_pred CCCC
Q 006771 91 SGGS 94 (632)
Q Consensus 91 ~~~~ 94 (632)
+...
T Consensus 95 ~~~~ 98 (113)
T 2dgz_A 95 SVQT 98 (113)
T ss_dssp TCCC
T ss_pred CCCC
Confidence 7653
No 134
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=63.32 E-value=5.6 Score=44.82 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=39.5
Q ss_pred hcCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhhcCCcccHHHHhhhhhhh
Q 006771 568 MQVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQSNNAVSASASRNIFQLV 629 (632)
Q Consensus 568 m~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~~~~~IG~~lSr~Iy~~v 629 (632)
+.||+|+...|..|.++|+|+..|.+|- .+++..- .. ||+.+++.|..||
T Consensus 515 LGI~~vG~~~a~~La~~f~sl~~l~~a~---------~e~l~~i--~g-iG~~~A~si~~ff 564 (586)
T 4glx_A 515 LGIREVGEATAAGLAAYFGTLEALEAAS---------IEELQKV--PD-VGIVVASHVHNFF 564 (586)
T ss_dssp TTCTTCCHHHHHHHHHHHCSHHHHHHCC---------HHHHTTS--TT-CCHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHcCCHHHHHccC---------HHHHhcC--CC-ccHHHHHHHHHHH
Confidence 5899999999999999999999888652 2233332 23 9999999999854
No 135
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=62.12 E-value=3.6 Score=40.93 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=22.8
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhccCCCCCChhhhhccccchHHHHHHHHHHhhc
Q 006771 13 RRVVCAENEELAMYMLQKRQEMAETPKGLSENIDMTLSKAYNNICDAKNPIKTLKDLSQVKGVGKWILKLMQEFFET 89 (632)
Q Consensus 13 ~~~~~~~N~~l~~~~~ew~~e~~e~~~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~l~~lkG~G~~i~~~L~~~~~~ 89 (632)
.++.++.|...+.++..-+||+-.= +.||.+..++=.. .-+.|..|+|||++.++.|-+||..
T Consensus 133 ~~~~l~~~s~~l~llq~irDEaHRF--------AIt~hr~~r~k~~------~~s~L~~IpGIG~k~ak~Ll~~FGS 195 (226)
T 3c65_A 133 DVVPLDRQSQEFYLLQRIQDEVHRF--------AVMFHRKTRQKTM------FHSVLDDIPGVGEKRKKALLNYFGS 195 (226)
T ss_dssp EECCCCTTSHHHHHHHHHHHHHHHH--------TTC-----------------------------------------
T ss_pred ceEecCCCCHHHhhhhhccchhhhh--------hhhcccccccccc------ccccccccCCCCHHHHHHHHHHhCC
Confidence 5789999999999999999998752 2345554444221 2345678888888888888777653
No 136
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=61.42 E-value=10 Score=36.79 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=37.9
Q ss_pred hCCCCCchhHHHHHHHHHHHHhccCCCCCChhhhhccccchHHHHHHHHHHhhc
Q 006771 36 ETPKGLSENIDMTLSKAYNNICDAKNPIKTLKDLSQVKGVGKWILKLMQEFFET 89 (632)
Q Consensus 36 e~~~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~l~~lkG~G~~i~~~L~~~~~~ 89 (632)
....|++.+.+...-+.+.++.+- --.++.+|..++|||+++++.|.+++.+
T Consensus 165 ~~i~gVg~~~a~~Ll~~fgs~~~l--~~a~~e~L~~v~GiG~~~a~~i~~~~~~ 216 (219)
T 2bgw_A 165 QSFPGIGRRTAERILERFGSLERF--FTASKAEISKVEGIGEKRAEEIKKILMT 216 (219)
T ss_dssp HTSTTCCHHHHHHHHHHHSSHHHH--TTCCHHHHHHSTTCCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHcCCHHHH--HhCCHHHHhhCCCCCHHHHHHHHHHHhc
Confidence 345578777777777776665442 1246788999999999999999888764
No 137
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=60.89 E-value=8 Score=32.22 Aligned_cols=44 Identities=25% Similarity=0.293 Sum_probs=35.2
Q ss_pred HHHHHHHhccC------CCCCChhhhhccccchHHHHHHHHHHhhcCCCC
Q 006771 50 SKAYNNICDAK------NPIKTLKDLSQVKGVGKWILKLMQEFFETDSGG 93 (632)
Q Consensus 50 ~kA~~sl~~~p------~~~~~~k~l~~lkG~G~~i~~~L~~~~~~~~~~ 93 (632)
.+||+.|+++. +.-.+..|+.+++|||++-++-+.+.+.+.|+.
T Consensus 25 ~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e~Gl~ 74 (79)
T 3gfk_B 25 VRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLG 74 (79)
T ss_dssp HHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHHcCCC
Confidence 46777777765 345688899999999999999999888877763
No 138
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=60.84 E-value=1.8 Score=49.11 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=0.0
Q ss_pred hcCCCCCHHHHHHHHHhcCCHHHHHHHHhhccccHHHHHHHhhhhcCCcccHHHHhhhhhhh
Q 006771 568 MQVPQVTEEIAITVLDLYPTLLSLAHAYSILEGDVCAQEEMLWKQSNNAVSASASRNIFQLV 629 (632)
Q Consensus 568 m~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~~~~~~~~e~mL~~~~~~~IG~~lSr~Iy~~v 629 (632)
+.|||||+..|..|+++|+|+..|.+|-. +++..- .. ||+.+++.|+.+|
T Consensus 532 LGIp~VG~~~ak~La~~Fgsle~L~~As~---------eeL~~I--~G-IG~~~A~sI~~ff 581 (615)
T 3sgi_A 532 LSIRHVGPTAARALATEFGSLDAIAAAST---------DQLAAV--EG-VGPTIAAAVTEWF 581 (615)
T ss_dssp --------------------------------------------------------------
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhCCH---------HHHhhC--CC-CCHHHHHHHHHHH
Confidence 48999999999999999999999998742 122222 12 8888888888754
No 139
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=60.72 E-value=7.4 Score=39.51 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCCC-CCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEe--eec
Q 006771 125 AYALLITLYRGTTNG-NEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVV--KSS 201 (632)
Q Consensus 125 aYAiLlaL~~~~~~~-~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~--~~g 201 (632)
|-.||++||-..... ...|.=.+||+.+++++-+ . . +.=.++.-|.++|++. +.|
T Consensus 24 a~Sli~tl~Gd~~~~~g~~i~~~~Li~l~~~~Gi~-----~--------------~---avR~Al~RL~~~G~l~~~~~G 81 (266)
T 3l09_A 24 LWSVLVTCLGDVSRDGVIEVSGVALSSFVERMGLQ-----P--------------Q---AMRVALHRLKRDGWVESRRLG 81 (266)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEHHHHHHHHHHTTCC-----H--------------H---HHHHHHHHHHHTTSEEEEEET
T ss_pred hhHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCC-----c--------------h---HHHHHHHHHHHCCCeeeeecC
Confidence 558999999633211 2359999999999997633 1 1 2445778899999886 457
Q ss_pred CCCceecChhHHHHHHH
Q 006771 202 CPAKYMLTPGGREAARE 218 (632)
Q Consensus 202 rP~rY~LTdeG~elA~~ 218 (632)
|-..|.||+.|.+....
T Consensus 82 r~~~Y~Lt~~g~~~l~~ 98 (266)
T 3l09_A 82 RVGFHRLSDSALTQTRA 98 (266)
T ss_dssp TEEEEEECHHHHHHHHT
T ss_pred CcceEEECHHHHHHHHH
Confidence 77789999999997643
No 140
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=60.46 E-value=7.2 Score=32.02 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee--cCC
Q 006771 126 YALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS--SCP 203 (632)
Q Consensus 126 YAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~--grP 203 (632)
+.||..|.. ...++-.||.+.. + +.+ -|...-++.|.++|||... |+.
T Consensus 27 ~~il~~l~~-----~~~~s~~ela~~l---~-----is~-----------------~tvs~~l~~L~~~glv~~~~~~r~ 76 (99)
T 3cuo_A 27 LLILCMLSG-----SPGTSAGELTRIT---G-----LSA-----------------SATSQHLARMRDEGLIDSQRDAQR 76 (99)
T ss_dssp HHHHHHHTT-----CCSEEHHHHHHHH---C-----CCH-----------------HHHHHHHHHHHHTTSEEEEECSSC
T ss_pred HHHHHHHHh-----CCCcCHHHHHHHH---C-----cCH-----------------HHHHHHHHHHHHCCCEEEEecCCE
Confidence 567766643 2468888876642 2 211 2567788999999999764 565
Q ss_pred CceecChhHHH-HHHHH
Q 006771 204 AKYMLTPGGRE-AAREC 219 (632)
Q Consensus 204 ~rY~LTdeG~e-lA~~l 219 (632)
..|.||++|.. +...+
T Consensus 77 ~~y~l~~~~~~~l~~~l 93 (99)
T 3cuo_A 77 ILYSIKNEAVNAIIATL 93 (99)
T ss_dssp EEEEECCHHHHHHHHHH
T ss_pred EEEEEChHHHHHHHHHH
Confidence 67999999964 44433
No 141
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=60.36 E-value=6 Score=34.11 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=46.5
Q ss_pred CchHHHHHHHHHhcCCCCCCCCCHHHHHH-HHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee
Q 006771 122 NSVAYALLITLYRGTTNGNEFMRKQDLID-AAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS 200 (632)
Q Consensus 122 rSGaYAiLlaL~~~~~~~~~~mtK~eLi~-~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~ 200 (632)
+-.-|.||+.|++. .+.|=.||-+ .-. + + . -|==.+++.|+++|||-..
T Consensus 15 ~~~QfsiL~~L~~~-----~~~t~~~Lae~~l~--------~--d------------r---stvsrnl~~L~r~GlVe~~ 64 (95)
T 1bja_A 15 NEKTATILITIAKK-----DFITAAEVREVHPD--------L--G------------N---AVVNSNIGVLIKKGLVEKS 64 (95)
T ss_dssp CHHHHHHHHHHHHS-----TTBCHHHHHHTCTT--------S--C------------H---HHHHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHHHHHHC-----CCCCHHHHHHHHhc--------c--c------------H---HHHHHHHHHHHHCCCeecC
Confidence 34579999999887 3678888776 210 1 1 0 0223458999999999844
Q ss_pred cCCCceecChhHHHHHHHHH
Q 006771 201 SCPAKYMLTPGGREAARECL 220 (632)
Q Consensus 201 grP~rY~LTdeG~elA~~l~ 220 (632)
|. -..||++|..+-+.-.
T Consensus 65 ~~--Dl~LT~~G~~~l~~a~ 82 (95)
T 1bja_A 65 GD--GLIITGEAQDIISNAA 82 (95)
T ss_dssp TT--EEEECHHHHHHHHHHH
T ss_pred CC--CeeeCHhHHHHHHHHH
Confidence 44 3999999999877644
No 142
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=58.39 E-value=8.5 Score=34.64 Aligned_cols=38 Identities=26% Similarity=0.259 Sum_probs=31.3
Q ss_pred ccchhhHHHHhcCcEeeecCCCceecChhHHHHHHHHHh
Q 006771 183 SGWSCMKTLITKGLVVKSSCPAKYMLTPGGREAARECLS 221 (632)
Q Consensus 183 taWsSmktLi~k~LV~~~grP~rY~LTdeG~elA~~l~~ 221 (632)
+....++.|.++|||....+ ..+.||+.|.+++..+..
T Consensus 70 tvs~~l~~Le~~Glv~r~~~-~~~~lT~~g~~~~~~~~~ 107 (155)
T 2h09_A 70 TVAKMLKRLATMGLIEMIPW-RGVFLTAEGEKLAQESRE 107 (155)
T ss_dssp HHHHHHHHHHHTTCEEEETT-TEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEecC-CceEEChhHHHHHHHHHH
Confidence 46778899999999987633 479999999999988764
No 143
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=57.11 E-value=4.8 Score=37.65 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=28.4
Q ss_pred cchhhHHHHhcCcEeeecC--CCceecChhHHHHHHHHH
Q 006771 184 GWSCMKTLITKGLVVKSSC--PAKYMLTPGGREAARECL 220 (632)
Q Consensus 184 aWsSmktLi~k~LV~~~gr--P~rY~LTdeG~elA~~l~ 220 (632)
-.-.|++|.++|||-+.=. =--|.||+||.+-=+...
T Consensus 42 ViKamqSLkSRGyVkEqFaWrhyYw~LTnEGIeYLR~yL 80 (162)
T 2xzm_7 42 CYILVRSLKDRGFLEEIFNWGFTYYYLNKEGCEYLKTKL 80 (162)
T ss_dssp HHHHHHHHHHHTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred HHHHHhcccccccccceeeeEEEEEEEchHHHHHHHHHh
Confidence 4667899999999987532 136999999999766543
No 144
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=56.44 E-value=7.7 Score=35.70 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=32.0
Q ss_pred ccchhhHHHHhcCcEee--ecCCCceecChhHHHHHHHHH
Q 006771 183 SGWSCMKTLITKGLVVK--SSCPAKYMLTPGGREAARECL 220 (632)
Q Consensus 183 taWsSmktLi~k~LV~~--~grP~rY~LTdeG~elA~~l~ 220 (632)
|...-++.|.+.|||.. .||...|.||++|+.....+.
T Consensus 87 tvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~l 126 (151)
T 3f6v_A 87 AISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRALF 126 (151)
T ss_dssp HHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHH
Confidence 57788999999999974 588878999999988777654
No 145
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=56.36 E-value=5.7 Score=41.66 Aligned_cols=29 Identities=3% Similarity=0.120 Sum_probs=26.6
Q ss_pred cCCCCCHHHHHHHHHhcCCHHHHHHHHhh
Q 006771 569 QVPQVTEEIAITVLDLYPTLLSLAHAYSI 597 (632)
Q Consensus 569 ~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~ 597 (632)
.|||||+..|..|+++|+|+..+++..++
T Consensus 236 gipGiG~KtA~kll~~~gsle~i~~~~~~ 264 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQKHKSIEEIVRRLDP 264 (341)
T ss_dssp CCTTCCHHHHHHHHHHHCSHHHHHHHSCT
T ss_pred CCCCccHHHHHHHHHHcCCHHHHHHHHHh
Confidence 48999999999999999999999988754
No 146
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=55.77 E-value=17 Score=40.53 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=31.4
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHh--cCCHHHHHHHHhh
Q 006771 560 SDVFAVQLMQVPQVTEEIAITVLDL--YPTLLSLAHAYSI 597 (632)
Q Consensus 560 ~e~f~~mLm~IpGVs~ekA~~I~~~--ypTp~~L~~Ay~~ 597 (632)
++.| ++|+.|+|||+.+|.+|.+. +-|+.+|..|...
T Consensus 89 ~~~~-~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~ 127 (575)
T 3b0x_A 89 PRGV-LEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDR 127 (575)
T ss_dssp CHHH-HHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHH
T ss_pred HHHH-HHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHc
Confidence 4444 57899999999999999996 7999999998754
No 147
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=54.76 E-value=6.2 Score=41.88 Aligned_cols=34 Identities=6% Similarity=0.128 Sum_probs=29.3
Q ss_pred HHHHhc------CCCCCHHHHHHHHHhcCCHHHHHHHHhh
Q 006771 564 AVQLMQ------VPQVTEEIAITVLDLYPTLLSLAHAYSI 597 (632)
Q Consensus 564 ~~mLm~------IpGVs~ekA~~I~~~ypTp~~L~~Ay~~ 597 (632)
+.+|+. |||||+..|..|++.|+|+..++++++.
T Consensus 225 ~~~L~G~D~~d~IpGIG~KtA~kLl~~~gsle~i~~~~~~ 264 (379)
T 1ul1_X 225 LCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDP 264 (379)
T ss_dssp HHHHHHCSSSCCCTTCCHHHHHHHHHHSSSHHHHHTTCCC
T ss_pred HHHHhCCCcCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHh
Confidence 346776 9999999999999999999999877654
No 148
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=53.63 E-value=31 Score=28.46 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCchhHHHHH-HHHHHHHhc-cCCCCCChhhhhccccchHHHHHH--------HHHHhhc
Q 006771 20 NEELAMYMLQKRQEMAETPKGLSENIDMTL-SKAYNNICD-AKNPIKTLKDLSQVKGVGKWILKL--------MQEFFET 89 (632)
Q Consensus 20 N~~l~~~~~ew~~e~~e~~~g~~~~~~~ty-~kA~~sl~~-~p~~~~~~k~l~~lkG~G~~i~~~--------L~~~~~~ 89 (632)
...+..-|.+|+.+.+.. .++.- ..++ .+.+..|+. .| .+..++..|+|||++-+++ +.+|+.+
T Consensus 6 ~~~l~~~L~~wR~~~A~~-~~vp~--~~If~d~tL~~iA~~~P---~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~~e 79 (85)
T 2kv2_A 6 VKKCLGELTEVCKSLGKV-FGVHY--FNIFNTVTLKKLAESLS---SDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEW 79 (85)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTSCH--HHHCCHHHHHHHHHHCC---SCHHHHHTSSSCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCc--ceeECHHHHHHHHHhCC---CCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 456888899999999873 25532 2333 355777766 44 5789999999998765554 4556665
Q ss_pred C
Q 006771 90 D 90 (632)
Q Consensus 90 ~ 90 (632)
+
T Consensus 80 ~ 80 (85)
T 2kv2_A 80 T 80 (85)
T ss_dssp C
T ss_pred c
Confidence 5
No 149
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=53.11 E-value=8.8 Score=39.88 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=26.3
Q ss_pred cCCCCCHHHHHHHHHhcCCHHHHHHHHh
Q 006771 569 QVPQVTEEIAITVLDLYPTLLSLAHAYS 596 (632)
Q Consensus 569 ~IpGVs~ekA~~I~~~ypTp~~L~~Ay~ 596 (632)
.|||||+..|..|+++|+|+..++++..
T Consensus 239 Gv~GiG~KtA~kLl~~~gsle~i~~~~~ 266 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKTYGDIFRALKALK 266 (336)
T ss_dssp CCTTCCHHHHHHHHHHHSSHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHhCC
Confidence 6999999999999999999999998876
No 150
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=52.70 E-value=5.2 Score=33.07 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeec---
Q 006771 125 AYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSS--- 201 (632)
Q Consensus 125 aYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~g--- 201 (632)
-+.||..|+.. ..++-.||.+.. + +.+ -|....++.|+++|||.+..
T Consensus 22 ~~~il~~l~~~-----~~~s~~ela~~l---~-----is~-----------------~tv~~~l~~L~~~glv~~~~~~~ 71 (109)
T 1sfx_A 22 DVRIYSLLLER-----GGMRVSEIAREL---D-----LSA-----------------RFVRDRLKVLLKRGFVRREIVEK 71 (109)
T ss_dssp HHHHHHHHHHH-----CCBCHHHHHHHH---T-----CCH-----------------HHHHHHHHHHHHTTSEEEEEEES
T ss_pred HHHHHHHHHHc-----CCCCHHHHHHHH---C-----CCH-----------------HHHHHHHHHHHHCCCEEEEeecC
Confidence 46788888653 358888887753 2 211 26788899999999998753
Q ss_pred -CCCceecChhHHHHHHHHHh
Q 006771 202 -CPAKYMLTPGGREAARECLS 221 (632)
Q Consensus 202 -rP~rY~LTdeG~elA~~l~~ 221 (632)
|...+.||+.|.++...+..
T Consensus 72 ~r~~~~~~t~~g~~~~~~~~~ 92 (109)
T 1sfx_A 72 GWVGYIYSAEKPEKVLKEFKS 92 (109)
T ss_dssp SSEEEEEEECCHHHHHHHHHH
T ss_pred CceEEEEecCcHHHHHHHHHH
Confidence 23357899999999988764
No 151
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=51.43 E-value=9.5 Score=37.05 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=30.4
Q ss_pred cchhhHHHHhcCcEeeecCC--CceecChhHHHHHHHHHh
Q 006771 184 GWSCMKTLITKGLVVKSSCP--AKYMLTPGGREAARECLS 221 (632)
Q Consensus 184 aWsSmktLi~k~LV~~~grP--~rY~LTdeG~elA~~l~~ 221 (632)
--..++.|.+++||.+.-.| ..+.||++|.++...+..
T Consensus 44 vSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~~~~ 83 (230)
T 3cta_A 44 ASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEFA 83 (230)
T ss_dssp HHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHHHHH
Confidence 44567999999999987333 369999999999987664
No 152
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=50.99 E-value=11 Score=36.87 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=23.7
Q ss_pred HHhcCCCCCHHHHHHHHHh-----cCCHHHHHH
Q 006771 566 QLMQVPQVTEEIAITVLDL-----YPTLLSLAH 593 (632)
Q Consensus 566 mLm~IpGVs~ekA~~I~~~-----ypTp~~L~~ 593 (632)
+|+.|||||+.+|.+|++. |.++.+|.+
T Consensus 133 eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~ 165 (205)
T 2i5h_A 133 QLELLPGVGKKMMWAIIEERKKRPFESFEDIAQ 165 (205)
T ss_dssp GGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 5889999999999999973 778777763
No 153
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=50.49 E-value=6.2 Score=41.28 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=19.2
Q ss_pred cCCCCCHHHHHHHHHhcCCHHHHHHHHhh
Q 006771 569 QVPQVTEEIAITVLDLYPTLLSLAHAYSI 597 (632)
Q Consensus 569 ~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~ 597 (632)
.|||||+..|..|+++|+|+..++++++.
T Consensus 238 Gv~GIG~KtA~kLi~~~gsle~i~~~~~~ 266 (346)
T 2izo_A 238 GIRGIGPERALKIIKKYGKIEKAMEYGEI 266 (346)
T ss_dssp CSTTCCHHHHHHHHHHSSCC---------
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHHHHh
Confidence 68899999999999999999999988764
No 154
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=50.43 E-value=9.8 Score=37.96 Aligned_cols=36 Identities=14% Similarity=0.296 Sum_probs=29.7
Q ss_pred hhhHHHHhcCcEeeecCCC-----ceecChhHHHHHHHHHh
Q 006771 186 SCMKTLITKGLVVKSSCPA-----KYMLTPGGREAARECLS 221 (632)
Q Consensus 186 sSmktLi~k~LV~~~grP~-----rY~LTdeG~elA~~l~~ 221 (632)
..++.|.++|||.+.-.|. .-.|||+|.++..++..
T Consensus 193 ~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~~~ 233 (250)
T 1p4x_A 193 RALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQLLA 233 (250)
T ss_dssp HHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHHHH
Confidence 3568899999999887774 37899999999988764
No 155
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=50.16 E-value=30 Score=29.80 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCchhHHHHH-HHHHHHHhc-cCCCCCChhhhhccccchHHHHHH--------HHHHhhc
Q 006771 20 NEELAMYMLQKRQEMAETPKGLSENIDMTL-SKAYNNICD-AKNPIKTLKDLSQVKGVGKWILKL--------MQEFFET 89 (632)
Q Consensus 20 N~~l~~~~~ew~~e~~e~~~g~~~~~~~ty-~kA~~sl~~-~p~~~~~~k~l~~lkG~G~~i~~~--------L~~~~~~ 89 (632)
...|..-|.+|+.+.+.. .++.. ..++ ...+..|+. .| .+..+|..|.|||++-+++ +.+|+.+
T Consensus 21 ~~~l~~~L~~wR~~~A~~-~~vP~--~~If~D~tL~eiA~~~P---~t~~eL~~I~Gvg~~k~~~yG~~~L~~I~~~~~e 94 (101)
T 2rrd_A 21 VKKCLGELTEVCKSLGKV-FGVHY--FNIFNTVTLKKLAESLS---SDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEW 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCCH--HHHCCHHHHHHHHHHCC---CCHHHHHTSTTCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCC--CeeECHHHHHHHHHhCC---CCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhChh
Confidence 356888899999999874 26642 2333 355777766 44 5788999999998876665 4456655
Q ss_pred C
Q 006771 90 D 90 (632)
Q Consensus 90 ~ 90 (632)
+
T Consensus 95 ~ 95 (101)
T 2rrd_A 95 T 95 (101)
T ss_dssp H
T ss_pred h
Confidence 4
No 156
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=49.17 E-value=11 Score=32.61 Aligned_cols=38 Identities=13% Similarity=0.015 Sum_probs=30.8
Q ss_pred ccchhhHHHHhcCcEee--ecCCCceecChhHHHHHHHHH
Q 006771 183 SGWSCMKTLITKGLVVK--SSCPAKYMLTPGGREAARECL 220 (632)
Q Consensus 183 taWsSmktLi~k~LV~~--~grP~rY~LTdeG~elA~~l~ 220 (632)
|.+.-++.|.+.|||.. .|+-..|.||++|++......
T Consensus 47 tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~ 86 (118)
T 3f6o_A 47 SFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWL 86 (118)
T ss_dssp HHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHH
Confidence 57788999999999964 477668999999998776543
No 157
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=47.76 E-value=11 Score=31.91 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=34.9
Q ss_pred HHHHHHHhccCC------CCCChhhhhccccchHHHHHHHHHHhhcCCCC
Q 006771 50 SKAYNNICDAKN------PIKTLKDLSQVKGVGKWILKLMQEFFETDSGG 93 (632)
Q Consensus 50 ~kA~~sl~~~p~------~~~~~k~l~~lkG~G~~i~~~L~~~~~~~~~~ 93 (632)
.+||..|+++.+ .-.+..|+.+++|||++-++-+.+.+.+.|+.
T Consensus 21 vRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~GL~ 70 (86)
T 3k4g_A 21 VRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASRGLS 70 (86)
T ss_dssp HHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHHcCCC
Confidence 366777777653 33577899999999999999999988888764
No 158
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=44.63 E-value=17 Score=35.85 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=47.3
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhccCCCCCChhhhhccccchHHHHHHHHHHhh
Q 006771 14 RVVCAENEELAMYMLQKRQEMAETPKGLSENIDMTLSKAYNNICDAKNPIKTLKDLSQVKGVGKWILKLMQEFFE 88 (632)
Q Consensus 14 ~~~~~~N~~l~~~~~ew~~e~~e~~~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~l~~lkG~G~~i~~~L~~~~~ 88 (632)
++.++.|...+.++..-+||+-. .+.||.+..++-.. .-+.|..|+|||++.++.|-.||.
T Consensus 129 ~~~l~~~s~~l~llq~iRDEaHR--------FAIt~hr~~R~k~~------~~s~LdgIpGIG~k~ak~Ll~~Fg 189 (220)
T 2nrt_A 129 EIHLPHDHPVLRLLVQIRDETHR--------FAVSYHRKRREKES------LRSVLDNVPGIGPIRKKKLIEHFG 189 (220)
T ss_dssp EECCCTTCHHHHHHHHHHHHHHH--------HHHGGGHHHHHHHH------HHHHHTTSTTCCHHHHHHHHHHHC
T ss_pred eeecCCCCHHHHhhhhhcchhhh--------cccccccccccccc------ccccccCCCCcCHHHHHHHHHHcC
Confidence 78899999999999999998865 24566655554443 245578899999999999988885
No 159
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=44.17 E-value=25 Score=29.69 Aligned_cols=44 Identities=11% Similarity=0.201 Sum_probs=29.6
Q ss_pred CCCCchhHHHHHHHHHHHHhccCCCCCChhhhhccccchHHHHHHHHH
Q 006771 38 PKGLSENIDMTLSKAYNNICDAKNPIKTLKDLSQVKGVGKWILKLMQE 85 (632)
Q Consensus 38 ~~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~l~~lkG~G~~i~~~L~~ 85 (632)
..|+..+.+...-.. .....+|.++.||..++|||++.+++|.+
T Consensus 45 ipGIG~~~A~~Il~~----r~~~g~f~s~edL~~v~Gig~k~~~~l~~ 88 (98)
T 2edu_A 45 LQRIGPKKAQLIVGW----RELHGPFSQVEDLERVEGITGKQMESFLK 88 (98)
T ss_dssp STTCCHHHHHHHHHH----HHHHCCCSSGGGGGGSTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH----HHhcCCcCCHHHHHhCCCCCHHHHHHHHH
Confidence 457765444333332 22235889999999999999999998754
No 160
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=43.78 E-value=18 Score=40.50 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=30.3
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHh-cCCHHHHHHHHh
Q 006771 560 SDVFAVQLMQVPQVTEEIAITVLDL-YPTLLSLAHAYS 596 (632)
Q Consensus 560 ~e~f~~mLm~IpGVs~ekA~~I~~~-ypTp~~L~~Ay~ 596 (632)
++. .+.|+.|+|||+.+|.+|.+. |-|+.+|.+|-.
T Consensus 93 ~~~-~~~L~~v~GVGpk~A~~i~~~G~~s~edL~~a~~ 129 (578)
T 2w9m_A 93 PPG-LLDLLGVRGLGPKKIRSLWLAGIDSLERLREAAE 129 (578)
T ss_dssp CHH-HHHHTTSTTCCHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred HHH-HHHHhCCCCcCHHHHHHHHHcCCCCHHHHHHHHh
Confidence 444 456899999999999999986 899999998853
No 161
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=43.52 E-value=4.9 Score=40.24 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHhcCCCCCHHHHHHHHHh-cCCHHHHHHH
Q 006771 566 QLMQVPQVTEEIAITVLDL-YPTLLSLAHA 594 (632)
Q Consensus 566 mLm~IpGVs~ekA~~I~~~-ypTp~~L~~A 594 (632)
.|+.|||||+.+|..|+++ |.|+..|..|
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a 45 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREAGFESVEDVRGA 45 (241)
T ss_dssp ------------------------------
T ss_pred HHhcCCCCCHHHHHHHHHcCCCCHHHHHhC
Confidence 5889999999999999998 9999888644
No 162
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=43.29 E-value=12 Score=40.14 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=49.9
Q ss_pred CCchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee
Q 006771 121 RNSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS 200 (632)
Q Consensus 121 ~rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~ 200 (632)
...+-|.+|..|+.... +++|=.||.+. .+.+.- |-=..++.|+++|||.+.
T Consensus 402 lt~~q~~vl~~l~~~~~---~~~~~~~l~~~---~~~~~~----------------------~~t~~~~~le~~g~v~r~ 453 (487)
T 1hsj_A 402 LNYEEIYILNHILRSES---NEISSKEIAKC---SEFKPY----------------------YLTKALQKLKDLKLLSKK 453 (487)
T ss_dssp CCHHHHHHHHHHHTCSC---SEEEHHHHHHS---SCCCHH----------------------HHHHHHHHHHTTTTSCCE
T ss_pred CCHHHHHHHHHHHhCCC---CCcCHHHHHHH---HCCCHH----------------------HHHHHHHHHHHCCCEeec
Confidence 44567899999976522 35777777662 211100 222356889999999987
Q ss_pred cCCC-----ceecChhHHHHHHHHHh
Q 006771 201 SCPA-----KYMLTPGGREAARECLS 221 (632)
Q Consensus 201 grP~-----rY~LTdeG~elA~~l~~ 221 (632)
-.|. .-.|||+|+++..++..
T Consensus 454 ~~~~D~R~~~i~lT~~g~~~~~~~~~ 479 (487)
T 1hsj_A 454 RSLQDERTVIVYVTDTQKANIQKLIS 479 (487)
T ss_dssp ECCSSSSCCEEECCSSHHHHHHHHHH
T ss_pred CCCCCCCeEEEEECHHHHHHHHHHHH
Confidence 6663 48999999999888764
No 163
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=42.23 E-value=36 Score=30.56 Aligned_cols=89 Identities=9% Similarity=0.146 Sum_probs=52.1
Q ss_pred cCCCcccccCCCchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHH
Q 006771 111 TKGTKRYMPQRNSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKT 190 (632)
Q Consensus 111 ~r~~k~YvP~~rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmkt 190 (632)
+|.+.-+.=+.++==.-++|+|... ....++=-.++|-+.+..++ +.| ++. |-...+..
T Consensus 5 ~~~~~~~~~~~~~fl~l~IL~ll~~-~p~YGYeI~~~L~e~~~~~~-----~~i------------s~g---tlYp~L~r 63 (122)
T 1bm9_A 5 KRSSTGFLVKQRAFLKLYMITMTEQ-ERLYGLKLLEVLRSEFKEIG-----FKP------------NHT---EVYRSLHE 63 (122)
T ss_dssp SCCCCSSSCCHHHHHHHHHHHHHHT-TCCBSTTHHHHHHHHHTTTT-----CCC------------CHH---HHHHHHHH
T ss_pred ccCCchhHHHHHHHHHHHHHHHHcc-CCchHHHHHHHHHHhhccCc-----ccC------------Ccc---cHHHHHHH
Confidence 4555566666666666677777654 23344434555554433333 222 122 34556788
Q ss_pred HHhcCcEeee----cCCCc-----eecChhHHH--HHHHHH
Q 006771 191 LITKGLVVKS----SCPAK-----YMLTPGGRE--AARECL 220 (632)
Q Consensus 191 Li~k~LV~~~----grP~r-----Y~LTdeG~e--lA~~l~ 220 (632)
|.++|||... ++|.+ |.|||.|.+ -.+..+
T Consensus 64 Le~~Gll~~~~~~~~g~~r~~rkyY~lT~~G~~~~~~~~~~ 104 (122)
T 1bm9_A 64 LLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLK 104 (122)
T ss_dssp HHHTTSEEEEEEECTTSTTCEEEEEEESCHHHHHHHHHHHH
T ss_pred HHHCCCeEEEEeecCCCCCCceeEEEEChhhhhHHHHHHHH
Confidence 9999999743 22432 999999999 555544
No 164
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=41.73 E-value=26 Score=34.17 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=30.5
Q ss_pred CCchhHHHHHHHHHHHHhc-cCCCC-CChhhhhccccchHHHHHHHHHHh
Q 006771 40 GLSENIDMTLSKAYNNICD-AKNPI-KTLKDLSQVKGVGKWILKLMQEFF 87 (632)
Q Consensus 40 g~~~~~~~ty~kA~~sl~~-~p~~~-~~~k~l~~lkG~G~~i~~~L~~~~ 87 (632)
|...+-+....++.+.+.. +...+ ...++|..|+|||+|++..+--|+
T Consensus 86 G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~~ 135 (221)
T 1kea_A 86 GLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLA 135 (221)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhCCCCcHHHHHHHHHHh
Confidence 5543334444555555433 22222 567899999999999999976654
No 165
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=41.59 E-value=20 Score=29.28 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=32.6
Q ss_pred HHHHHHhccCC------CCCChhhhhccccchHHHHHHHHHHhhcCCCC
Q 006771 51 KAYNNICDAKN------PIKTLKDLSQVKGVGKWILKLMQEFFETDSGG 93 (632)
Q Consensus 51 kA~~sl~~~p~------~~~~~k~l~~lkG~G~~i~~~L~~~~~~~~~~ 93 (632)
+||+.|+++.+ .=.+..|+.+++|||++-++.+.+.+.+.|+.
T Consensus 19 Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~~gl~ 67 (73)
T 1z3e_B 19 RSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLG 67 (73)
T ss_dssp HHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Confidence 56666665542 23567888999999999999999888877764
No 166
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=41.44 E-value=32 Score=33.13 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=31.6
Q ss_pred CCCchhHHHHHHHHHHHHhc-cCCCC-CChhhhhccccchHHHHHHHHHHh
Q 006771 39 KGLSENIDMTLSKAYNNICD-AKNPI-KTLKDLSQVKGVGKWILKLMQEFF 87 (632)
Q Consensus 39 ~g~~~~~~~ty~kA~~sl~~-~p~~~-~~~k~l~~lkG~G~~i~~~L~~~~ 87 (632)
-|...+-+....++.+.+.. +...+ ...++|.+|+|||+|++..+--|+
T Consensus 79 ~G~~~~KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 79 IGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHhCCCCChHHHHHHHHHH
Confidence 36543344455555555543 22222 567889999999999999976654
No 167
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=41.35 E-value=25 Score=33.84 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=36.7
Q ss_pred CCCCCchhHHHHHHHHHHH---HhccCCCCCChhhhhccccchHHHHHHHHHHhhcC
Q 006771 37 TPKGLSENIDMTLSKAYNN---ICDAKNPIKTLKDLSQVKGVGKWILKLMQEFFETD 90 (632)
Q Consensus 37 ~~~g~~~~~~~ty~kA~~s---l~~~p~~~~~~k~l~~lkG~G~~i~~~L~~~~~~~ 90 (632)
+-+|++.+.+...-..+.+ ..+ +--.++++|.+++|||+|+++++-..+++.
T Consensus 76 ~v~GIGpk~A~~iL~~f~~~~l~~a--I~~~d~~~L~~vpGIG~K~A~rI~~~lk~k 130 (191)
T 1ixr_A 76 SVSGVGPKVALALLSALPPRLLARA--LLEGDARLLTSASGVGRRLAERIALELKGK 130 (191)
T ss_dssp SSSCCCHHHHHHHHHHSCHHHHHHH--HHTTCHHHHTTSTTCCHHHHHHHHHHHTTT
T ss_pred cCCCcCHHHHHHHHHhCChHHHHHH--HHhCCHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 4569988777666555444 211 123589999999999999999987776543
No 168
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=39.76 E-value=29 Score=36.98 Aligned_cols=41 Identities=7% Similarity=0.137 Sum_probs=32.4
Q ss_pred ccchHHHH-HHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHhh
Q 006771 557 MTVSDVFA-VQLMQVPQVTEEIAITVLDLYPTLLSLAHAYSI 597 (632)
Q Consensus 557 ~Tv~e~f~-~mLm~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~ 597 (632)
|+-.|... ..|..+|||++..+..|+++|+++..++++...
T Consensus 17 m~~~e~~~wL~L~~~~gvG~~~~~~Ll~~fgs~~~~~~a~~~ 58 (382)
T 3maj_A 17 LTEAQRIDWMRLIRAENVGPRTFRSLINHFGSARAALERLPE 58 (382)
T ss_dssp SCHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCHHHHHHcCHH
Confidence 44444433 358899999999999999999999999887643
No 169
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=39.24 E-value=21 Score=29.44 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=29.0
Q ss_pred ccchhhHHHHhcCcEeee--cCCCceecChhHHHHHHH
Q 006771 183 SGWSCMKTLITKGLVVKS--SCPAKYMLTPGGREAARE 218 (632)
Q Consensus 183 taWsSmktLi~k~LV~~~--grP~rY~LTdeG~elA~~ 218 (632)
|.+.-++.|.+.|||... |+...|.||+++.+-...
T Consensus 52 tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~ 89 (98)
T 3jth_A 52 ALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIK 89 (98)
T ss_dssp HHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHH
Confidence 678889999999999754 665679999999765444
No 170
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=38.32 E-value=38 Score=33.12 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=30.5
Q ss_pred CCchhHHHHHHHHHHHHhccCCCCCC---------hhhhhccccchHHHHHHHHHHh
Q 006771 40 GLSENIDMTLSKAYNNICDAKNPIKT---------LKDLSQVKGVGKWILKLMQEFF 87 (632)
Q Consensus 40 g~~~~~~~ty~kA~~sl~~~p~~~~~---------~k~l~~lkG~G~~i~~~L~~~~ 87 (632)
|+..+-+.....+.+.+.+-.+.+.. .++|..|+|||+|+++.+--|+
T Consensus 110 G~~~~KA~~i~~lA~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~ 166 (225)
T 2yg9_A 110 GLSWAKVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFA 166 (225)
T ss_dssp TCCHHHHHHHHHHHHHHHTTSSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHhCCcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 55433344445555555553333322 4668999999999999976664
No 171
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=37.43 E-value=49 Score=32.36 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCCC
Q 006771 125 AYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCPA 204 (632)
Q Consensus 125 aYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP~ 204 (632)
+..||-.|... ...++=.||-+. .+ ++. -|...-++||.+.|||.+. +-.
T Consensus 10 ~l~iL~~l~~~----~~~~~~~ela~~---~g-----l~~-----------------stv~r~l~~L~~~G~v~~~-~~~ 59 (249)
T 1mkm_A 10 AFEILDFIVKN----PGDVSVSEIAEK---FN-----MSV-----------------SNAYKYMVVLEEKGFVLRK-KDK 59 (249)
T ss_dssp HHHHHHHHHHC----SSCBCHHHHHHH---TT-----CCH-----------------HHHHHHHHHHHHTTSEEEC-TTS
T ss_pred HHHHHHHHHhC----CCCCCHHHHHHH---HC-----cCH-----------------HHHHHHHHHHHHCCcEEEC-CCC
Confidence 55677666543 236887777664 22 221 2688889999999999987 446
Q ss_pred ceecChhHHHHHHHHHhh
Q 006771 205 KYMLTPGGREAARECLSR 222 (632)
Q Consensus 205 rY~LTdeG~elA~~l~~~ 222 (632)
+|.|+....+++......
T Consensus 60 ~Y~lg~~~~~l~~~~~~~ 77 (249)
T 1mkm_A 60 RYVPGYKLIEYGSFVLRR 77 (249)
T ss_dssp CEEECTHHHHHHHHHHHH
T ss_pred cEEECHHHHHHHHHHHhc
Confidence 899999999999876543
No 172
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=36.93 E-value=50 Score=33.28 Aligned_cols=48 Identities=19% Similarity=0.323 Sum_probs=32.6
Q ss_pred CCchhHHHHHHHHHHHHhccCCCCCC-------hhhhhccccchHHHHHHHHHHh
Q 006771 40 GLSENIDMTLSKAYNNICDAKNPIKT-------LKDLSQVKGVGKWILKLMQEFF 87 (632)
Q Consensus 40 g~~~~~~~ty~kA~~sl~~~p~~~~~-------~k~l~~lkG~G~~i~~~L~~~~ 87 (632)
|...+-+.+..++.+.+.+-.+.+.. .++|.+|+|||+|++..+--|+
T Consensus 173 G~~~~ra~~i~~~A~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~~ 227 (282)
T 1mpg_A 173 GMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRG 227 (282)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHHh
Confidence 65444455666666666554333332 4779999999999999976664
No 173
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=34.81 E-value=28 Score=33.78 Aligned_cols=48 Identities=10% Similarity=0.230 Sum_probs=34.1
Q ss_pred CCCCchhHHHHHHHHHHH---HhccCCCCCChhhhhccccchHHHHHHHHHHh
Q 006771 38 PKGLSENIDMTLSKAYNN---ICDAKNPIKTLKDLSQVKGVGKWILKLMQEFF 87 (632)
Q Consensus 38 ~~g~~~~~~~ty~kA~~s---l~~~p~~~~~~k~l~~lkG~G~~i~~~L~~~~ 87 (632)
-+|++.+.+...-..+.+ +.+- --.++++|.+++|||+|+++++-..+
T Consensus 78 V~GIGpk~A~~iL~~f~~~~l~~aI--~~~d~~~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 78 TNGVGPKLALAILSGMSAQQFVNAV--EREEVGALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp SSSCCHHHHHHHHHHSCHHHHHHHH--HTTCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHhhCChHHHHHHH--HhCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 458988777666655554 2221 23578999999999999999975444
No 174
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=34.70 E-value=49 Score=32.22 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCCCchhHHHHHHHHHHHHhc-cCCCC-CChhhhhccccchHHHHHHHHHHh
Q 006771 38 PKGLSENIDMTLSKAYNNICD-AKNPI-KTLKDLSQVKGVGKWILKLMQEFF 87 (632)
Q Consensus 38 ~~g~~~~~~~ty~kA~~sl~~-~p~~~-~~~k~l~~lkG~G~~i~~~L~~~~ 87 (632)
.-|.. +-+....++.+.+.. +...+ ...++|..|+|||+|++..+--|+
T Consensus 79 ~~G~~-~kA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a 129 (225)
T 1kg2_A 79 GLGYY-ARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLS 129 (225)
T ss_dssp TSCCT-HHHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHHH
T ss_pred hCChH-HHHHHHHHHHHHHHHHhCCCchHHHHHHhcCCCCcHHHHHHHHHHh
Confidence 34664 334455555555543 33222 357899999999999999966553
No 175
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=34.35 E-value=16 Score=31.05 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=22.5
Q ss_pred cchHHHHHHHhcCCCCCHHHHHHHHHhc
Q 006771 558 TVSDVFAVQLMQVPQVTEEIAITVLDLY 585 (632)
Q Consensus 558 Tv~e~f~~mLm~IpGVs~ekA~~I~~~y 585 (632)
.+.......|..||||+...|.+|++++
T Consensus 33 ~iN~a~~~~L~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 33 LLNEGSARDLRSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHHHSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred ehhhCCHHHHHHCCCCCHHHHHHHHHHH
Confidence 3444445678999999999999999886
No 176
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=34.20 E-value=42 Score=33.04 Aligned_cols=48 Identities=21% Similarity=0.428 Sum_probs=31.9
Q ss_pred CCchhHHHHHHHHHHHHhccCCC-C---------CChhhhhccccchHHHHHHHHHHh
Q 006771 40 GLSENIDMTLSKAYNNICDAKNP-I---------KTLKDLSQVKGVGKWILKLMQEFF 87 (632)
Q Consensus 40 g~~~~~~~ty~kA~~sl~~~p~~-~---------~~~k~l~~lkG~G~~i~~~L~~~~ 87 (632)
|...+-+.....+.+.+..-.+| + ...++|.+|+|||+|+++++--|+
T Consensus 113 Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~a 170 (232)
T 4b21_A 113 GFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFT 170 (232)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 66533344555555666554443 1 246789999999999999976664
No 177
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=32.93 E-value=53 Score=32.74 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCCC
Q 006771 125 AYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCPA 204 (632)
Q Consensus 125 aYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP~ 204 (632)
|-.++++|+-... ...+.=.+||+.+++++-+ +. +.=.++.-|.+.|++....+-
T Consensus 5 arSlIlsll~g~~--g~~i~~~~Li~l~~~~Gi~-----e~-----------------avRtAlsRL~~~G~L~~~~~G- 59 (247)
T 3kfw_X 5 ARSVVLSVLLGAH--PAWATASELIQLTADFGIK-----ET-----------------TLRVALTRMVGAGDLVRSADG- 59 (247)
T ss_dssp HHHHHHHHHTTTT--TSCBCHHHHHHHHTTTTCC-----HH-----------------HHHHHHHHHHHTTSEEEETTE-
T ss_pred CceeeEeeecCCC--CCcccHHHHHHHHHHcCCC-----hH-----------------HHHHHHHHHHHcCCeeccCCc-
Confidence 4468999864443 2469999999999987633 21 344678889999999765432
Q ss_pred ceecChhHHHHHH
Q 006771 205 KYMLTPGGREAAR 217 (632)
Q Consensus 205 rY~LTdeG~elA~ 217 (632)
|.||+.|.+.-.
T Consensus 60 -Y~LT~~~~~~~~ 71 (247)
T 3kfw_X 60 -YRLSDRLLARQR 71 (247)
T ss_dssp -EEECHHHHHHHH
T ss_pred -eeeCHHHHHHHH
Confidence 999999988544
No 178
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=32.81 E-value=34 Score=33.63 Aligned_cols=48 Identities=25% Similarity=0.474 Sum_probs=30.7
Q ss_pred CCchhHHHHHHHHHHHHhccCCCCC----------ChhhhhccccchHHHHHHHHHHh
Q 006771 40 GLSENIDMTLSKAYNNICDAKNPIK----------TLKDLSQVKGVGKWILKLMQEFF 87 (632)
Q Consensus 40 g~~~~~~~ty~kA~~sl~~~p~~~~----------~~k~l~~lkG~G~~i~~~L~~~~ 87 (632)
|+..+-+....++.+.+..-.+|-- -.++|.+|+|||+|+++.+--|+
T Consensus 102 G~~~rKa~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~ 159 (228)
T 3s6i_A 102 GFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFS 159 (228)
T ss_dssp TCCHHHHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 5543334445555555554444311 15789999999999999976664
No 179
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=31.74 E-value=24 Score=29.42 Aligned_cols=35 Identities=17% Similarity=0.043 Sum_probs=27.4
Q ss_pred ccchhhHHHHhcCcEeee--cCCCceecChhHHHHHH
Q 006771 183 SGWSCMKTLITKGLVVKS--SCPAKYMLTPGGREAAR 217 (632)
Q Consensus 183 taWsSmktLi~k~LV~~~--grP~rY~LTdeG~elA~ 217 (632)
|...-++.|...|||..+ |+-..|.||+++..-.-
T Consensus 52 tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~ 88 (102)
T 3pqk_A 52 TLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLV 88 (102)
T ss_dssp HHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHH
Confidence 567789999999999754 65557999998776543
No 180
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=31.26 E-value=8.8 Score=40.60 Aligned_cols=28 Identities=7% Similarity=0.153 Sum_probs=25.3
Q ss_pred cCCCCCHHHHHHHHHhcCCHHHHHHHHh
Q 006771 569 QVPQVTEEIAITVLDLYPTLLSLAHAYS 596 (632)
Q Consensus 569 ~IpGVs~ekA~~I~~~ypTp~~L~~Ay~ 596 (632)
.|||||+.+|..|+++|+|+..++++..
T Consensus 255 GVpGIG~KtA~kLl~~~gsle~il~~~~ 282 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYGGIEKIPKPIL 282 (363)
T ss_dssp CSTTCCHHHHHHHHHHHTSSTTSCGGGC
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHhcc
Confidence 6789999999999999999999887765
No 181
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=31.17 E-value=57 Score=31.81 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=30.1
Q ss_pred CCchhHHHHHHHHHHHHhc-cCCCC-CChhhhhccccchHHHHHHHHHHh
Q 006771 40 GLSENIDMTLSKAYNNICD-AKNPI-KTLKDLSQVKGVGKWILKLMQEFF 87 (632)
Q Consensus 40 g~~~~~~~ty~kA~~sl~~-~p~~~-~~~k~l~~lkG~G~~i~~~L~~~~ 87 (632)
|...+-+....++.+.+.. +...+ ...++|.+|+|||+|++..+--|+
T Consensus 84 G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a 133 (226)
T 1orn_A 84 GLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVA 133 (226)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 5533333344445545443 22222 468999999999999999976653
No 182
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=30.97 E-value=30 Score=30.59 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=49.9
Q ss_pred CCchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee
Q 006771 121 RNSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS 200 (632)
Q Consensus 121 ~rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~ 200 (632)
...|-|.+|+.|++....|..+.|-.+|-+. .+.+.- +-=..++.|++||||...
T Consensus 30 Lt~~e~~vll~L~~~~~~~~~~ps~~~LA~~---l~~s~~----------------------~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 30 LGEGELVLLLHMQSFFEEGVLFPTPAELAER---MTVSAA----------------------ECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSSCCHHHHHHT---SSSCHH----------------------HHHHHHHHHHHTTSSEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH---HCcCHH----------------------HHHHHHHHHHHCCCEEEE
Confidence 4578899999999886667778888887663 221211 234567899999999875
Q ss_pred cCCC-------ceecChhHHHHHHHH
Q 006771 201 SCPA-------KYMLTPGGREAAREC 219 (632)
Q Consensus 201 grP~-------rY~LTdeG~elA~~l 219 (632)
-++. .|.|++-=.-|+.-+
T Consensus 85 ~~~~~~g~~~~~Ydl~pl~~kL~~~~ 110 (128)
T 2vn2_A 85 EHTDEQGIRNEKYTLEPLWEKLVHHL 110 (128)
T ss_dssp C----------CEECHHHHHHHHHHH
T ss_pred eEECCCCcEEEEEehHHHHHHHHHHH
Confidence 4432 589887666555543
No 183
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=30.71 E-value=10 Score=39.31 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeeecCCC
Q 006771 125 AYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKSSCPA 204 (632)
Q Consensus 125 aYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~grP~ 204 (632)
=|.||..||.. +++|-.||-+ .++-|..|+. .-++.|.++|||..+- .
T Consensus 22 ~~~iL~~l~~~-----~~~t~~eLa~---~l~vs~~Tv~----------------------r~l~~Le~~Glv~~~~--~ 69 (345)
T 2o0m_A 22 RFQILRNIYWM-----QPIGRRSLSE---TMGITERVLR----------------------TETDVLKQLNLIEPSK--S 69 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHc-----CCCCHHHHHH---HHCcCHHHHH----------------------HHHHHHHHCCCEEEEe--c
Confidence 36788888765 4677666644 4444444432 3467899999996432 3
Q ss_pred ceecChhHHHHHHHHHh
Q 006771 205 KYMLTPGGREAARECLS 221 (632)
Q Consensus 205 rY~LTdeG~elA~~l~~ 221 (632)
...|||+|.++...+..
T Consensus 70 gi~LT~~G~~~~~~~~~ 86 (345)
T 2o0m_A 70 GMTLTERGLEVYQGLEL 86 (345)
T ss_dssp -----------------
T ss_pred ceEEcHHHHHHHHHHHH
Confidence 48999999999988764
No 184
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=29.86 E-value=18 Score=29.92 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=26.4
Q ss_pred ccchhhHHHHhcCcEeeecCCCceecChhHHHH
Q 006771 183 SGWSCMKTLITKGLVVKSSCPAKYMLTPGGREA 215 (632)
Q Consensus 183 taWsSmktLi~k~LV~~~grP~rY~LTdeG~el 215 (632)
|.+.-++.|.+.|||.+.. . .|.||++|..+
T Consensus 59 tv~~~L~~L~~~Glv~~~~-g-~y~l~~~g~~~ 89 (96)
T 1y0u_A 59 QLDYHLKVLEAGFCIERVG-E-RWVVTDAGKIV 89 (96)
T ss_dssp HHHHHHHHHHHTTSEEEET-T-EEEECTTTCCC
T ss_pred HHHHHHHHHHHCCCEEEEC-C-EEEECCCchHH
Confidence 6788899999999998776 3 99999998654
No 185
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=29.35 E-value=47 Score=27.08 Aligned_cols=68 Identities=25% Similarity=0.303 Sum_probs=46.3
Q ss_pred chHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee--
Q 006771 123 SVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS-- 200 (632)
Q Consensus 123 SGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~-- 200 (632)
..-+.+|+.|+.. ..+++-.||-+.. +.+ + -|...-++.|.++|||.+.
T Consensus 21 ~~~~~~l~~l~~~----~~~~t~~ela~~l---~is-----~-----------------~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 21 DTDVAVLLKMVEI----EKPITSEELADIF---KLS-----K-----------------TTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp HHHHHHHHHHHHH----CSCEEHHHHHHHH---TCC-----H-----------------HHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHc----CCCCCHHHHHHHH---CcC-----H-----------------HHHHHHHHHHHHCCCeEeecc
Confidence 3457788888753 2468888887642 222 1 2567788999999999865
Q ss_pred -----cCCC-ceecChhHHHHHHHH
Q 006771 201 -----SCPA-KYMLTPGGREAAREC 219 (632)
Q Consensus 201 -----grP~-rY~LTdeG~elA~~l 219 (632)
|+|. .|.||++..+.+...
T Consensus 72 ~~~~~gr~~~~~~l~~~~~~~~~~~ 96 (109)
T 2d1h_A 72 EGKKIGRPKYYYSISSNILEKIRND 96 (109)
T ss_dssp -------CCEEEEECTTHHHHHHHH
T ss_pred ccCCCCCCCeeeecCHHHHHHHHHH
Confidence 3555 499999888777653
No 186
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=29.15 E-value=22 Score=30.25 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=27.5
Q ss_pred ccchhhHHHHhcCcEee--ecCCCceecChhHHHHH
Q 006771 183 SGWSCMKTLITKGLVVK--SSCPAKYMLTPGGREAA 216 (632)
Q Consensus 183 taWsSmktLi~k~LV~~--~grP~rY~LTdeG~elA 216 (632)
|.+.-++.|.+.|||.. .|+...|.||++|..-.
T Consensus 54 tvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l 89 (108)
T 2kko_A 54 TASANLQALKSGGLVEARREGTRQYYRIAGEDVARL 89 (108)
T ss_dssp HHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHH
Confidence 67888999999999974 46666799999996443
No 187
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=29.10 E-value=34 Score=30.96 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=46.5
Q ss_pred CchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhc---CcEe
Q 006771 122 NSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITK---GLVV 198 (632)
Q Consensus 122 rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k---~LV~ 198 (632)
.-..+-+++++.+.. .++ .+|+..+-| + =+.|..|+.|.+. -|+.
T Consensus 25 ~~~~L~~f~av~e~g-----S~s-----~AA~~L~iS-----q-----------------savS~~I~~LE~~lG~~Lf~ 72 (135)
T 2ijl_A 25 GHGKVELMQLIAETG-----SIS-----AAGRAMDMS-----Y-----------------RRAWLLVDALNHMFRQPVIC 72 (135)
T ss_dssp SHHHHHHHHHHHHHS-----CHH-----HHHHHTTCC-----H-----------------HHHHHHHHHHHHHBSSCSEE
T ss_pred CHHHHHHHHHHHHhC-----CHH-----HHHHHHCcC-----H-----------------HHHHHHHHHHHHHHCCeeEE
Confidence 345677777776652 233 567765533 1 1589999999877 7888
Q ss_pred eecC---CCceecChhHHHHHHHHHh
Q 006771 199 KSSC---PAKYMLTPGGREAARECLS 221 (632)
Q Consensus 199 ~~gr---P~rY~LTdeG~elA~~l~~ 221 (632)
++++ ...+.||++|..+...+..
T Consensus 73 R~~~G~~grg~~LT~~G~~ll~~a~~ 98 (135)
T 2ijl_A 73 SQRGGKQGGGAALTVFGAELLERYRG 98 (135)
T ss_dssp ECCC------EEECHHHHHHHHHHHH
T ss_pred ecCCCCCCCceeECHHHHHHHHHHHH
Confidence 8754 2369999999999887664
No 188
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=28.73 E-value=31 Score=36.15 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=24.1
Q ss_pred cCCCCCHHHHHHHHHhc--CCHHHHHHHHh
Q 006771 569 QVPQVTEEIAITVLDLY--PTLLSLAHAYS 596 (632)
Q Consensus 569 ~IpGVs~ekA~~I~~~y--pTp~~L~~Ay~ 596 (632)
.|||||+.+|..+++.| +++..+++...
T Consensus 229 gv~GiG~ktA~kli~~~~~~~l~~il~~~~ 258 (352)
T 3qe9_Y 229 SLRGIGLAKACKVLRLANNPDIVKVIKKIG 258 (352)
T ss_dssp CCTTCCHHHHHHHHHHCCCSCHHHHHTTHH
T ss_pred CCCCeeHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 79999999999999999 68887776543
No 189
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=28.63 E-value=38 Score=29.03 Aligned_cols=71 Identities=17% Similarity=0.118 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee--
Q 006771 124 VAYALLITLYRGTTN-GNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS-- 200 (632)
Q Consensus 124 GaYAiLlaL~~~~~~-~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~-- 200 (632)
.-|++|.+|+..... ....++=.||-+...- + . ++-=--++.|.+.|||...
T Consensus 17 ~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l---~------------------~----stLsR~l~rLe~~GLV~r~~~ 71 (96)
T 2obp_A 17 AIVEVLLVLREAGIENGATPWSLPKIAKRAQL---P------------------M----SVLRRVLTQLQAAGLADVSVE 71 (96)
T ss_dssp HHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTC---C------------------H----HHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCC---c------------------h----hhHHHHHHHHHHCCCEEeecC
Confidence 468999999876432 2234677777665331 1 0 1222245788999999853
Q ss_pred --cCCCceecChhHHHHHHHHH
Q 006771 201 --SCPAKYMLTPGGREAARECL 220 (632)
Q Consensus 201 --grP~rY~LTdeG~elA~~l~ 220 (632)
||- .-.||++|+++.+++.
T Consensus 72 ~D~R~-~v~LT~~G~~~l~~~~ 92 (96)
T 2obp_A 72 ADGRG-HASLTQEGAALAAQLF 92 (96)
T ss_dssp TTSCE-EEEECHHHHHHHHHHC
T ss_pred CCCce-eEEECHHHHHHHHHhc
Confidence 332 3799999999988763
No 190
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=28.58 E-value=30 Score=32.47 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=24.1
Q ss_pred hhhHHHHhcCcEee------ecCCCceecChhHHH
Q 006771 186 SCMKTLITKGLVVK------SSCPAKYMLTPGGRE 214 (632)
Q Consensus 186 sSmktLi~k~LV~~------~grP~rY~LTdeG~e 214 (632)
.-+++|+.+|||.+ .|||..|.+|++-.+
T Consensus 124 ~~v~~L~e~glI~e~g~~~~~GRp~ly~tT~~fL~ 158 (162)
T 1t6s_A 124 YSIDRLLARGLIEVRGRADSPGRPLQYGTTEVFLD 158 (162)
T ss_dssp SHHHHHHHTTSEEEEEECSSTTCCEEEEECHHHHH
T ss_pred HHHHHHHHCCCEEEccccCCCCCCeEEEECHHHHH
Confidence 36899999999986 377888999998655
No 191
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=28.45 E-value=15 Score=38.21 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=25.7
Q ss_pred cCCCCCHHHHHHHHHhcCCHHHHHHHHhhc
Q 006771 569 QVPQVTEEIAITVLDLYPTLLSLAHAYSIL 598 (632)
Q Consensus 569 ~IpGVs~ekA~~I~~~ypTp~~L~~Ay~~~ 598 (632)
.|||||+..|..|++.|+|+..+++.-+..
T Consensus 241 gv~GiG~ktA~kli~~~gsle~il~~~~~~ 270 (340)
T 1b43_A 241 GIKGIGLKKALEIVRHSKDPLAKFQKQSDV 270 (340)
T ss_dssp CSTTCCHHHHHHHHHTCSSGGGGTGGGCSS
T ss_pred CCCCccHHHHHHHHHHcCCHHHHHcCCCCc
Confidence 688999999999999999999887664443
No 192
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=28.29 E-value=37 Score=29.29 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=33.4
Q ss_pred HHHHHHhccCC------CCCChhhhhccccchHHHHHHHHHHhhcCCCC
Q 006771 51 KAYNNICDAKN------PIKTLKDLSQVKGVGKWILKLMQEFFETDSGG 93 (632)
Q Consensus 51 kA~~sl~~~p~------~~~~~k~l~~lkG~G~~i~~~L~~~~~~~~~~ 93 (632)
+||..|+++.+ .-++..|+.+++|||++-++-+.+.+.+.|+.
T Consensus 34 Rs~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~Gl~ 82 (98)
T 1coo_A 34 RSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLS 82 (98)
T ss_dssp TTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHHHcCcc
Confidence 46666666543 34677889999999999999999888887764
No 193
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=26.93 E-value=24 Score=29.50 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=23.4
Q ss_pred ccchhhHHHHhcCcEeee-cCCCceecChh
Q 006771 183 SGWSCMKTLITKGLVVKS-SCPAKYMLTPG 211 (632)
Q Consensus 183 taWsSmktLi~k~LV~~~-grP~rY~LTde 211 (632)
+.-.-+++|...|+|... |+|.+|+||.+
T Consensus 46 aVr~~L~~Le~eG~I~~~~~~PP~W~~~~~ 75 (82)
T 1oyi_A 46 EVNKALYDLQRSAMVYSSDDIPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHHHHTSSEECSSSSCEEESCC-
T ss_pred HHHHHHHHHHHCCCEEeCCCCCCcceeccC
Confidence 456678999999999865 88999999976
No 194
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=26.87 E-value=35 Score=33.29 Aligned_cols=14 Identities=43% Similarity=0.935 Sum_probs=7.5
Q ss_pred CCCCChhhhhc-ccc
Q 006771 61 NPIKTLKDLSQ-VKG 74 (632)
Q Consensus 61 ~~~~~~k~l~~-lkG 74 (632)
.||.+..||++ |+|
T Consensus 155 G~F~s~eDL~~RV~G 169 (205)
T 2i5h_A 155 RPFESFEDIAQRVKG 169 (205)
T ss_dssp SCCCSHHHHHHHSTT
T ss_pred CCCCCHHHHHHhcCC
Confidence 45555555544 555
No 195
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=25.96 E-value=24 Score=34.02 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=0.0
Q ss_pred hhhhccccchHHHHHHH
Q 006771 67 KDLSQVKGVGKWILKLM 83 (632)
Q Consensus 67 k~l~~lkG~G~~i~~~L 83 (632)
++|.+|+|||+|++..+
T Consensus 117 ~~L~~lpGIG~kTA~~i 133 (207)
T 3fhg_A 117 ERLLNIKGIGMQEASHF 133 (207)
T ss_dssp HHHTTSTTCCHHHHHHH
T ss_pred HHHHcCCCcCHHHHHHH
No 196
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=25.93 E-value=35 Score=29.66 Aligned_cols=38 Identities=21% Similarity=0.127 Sum_probs=27.5
Q ss_pred ccchhhHHHHhcCcEeee--cCCCceecChhHHH-HHHHHH
Q 006771 183 SGWSCMKTLITKGLVVKS--SCPAKYMLTPGGRE-AARECL 220 (632)
Q Consensus 183 taWsSmktLi~k~LV~~~--grP~rY~LTdeG~e-lA~~l~ 220 (632)
|...-++.|.+.|||... |+-..|.||++|.. ++..+.
T Consensus 72 tvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~ 112 (122)
T 1u2w_A 72 NASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIAL 112 (122)
T ss_dssp HHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHHHHH
Confidence 567789999999999754 66567999999965 444443
No 197
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=25.82 E-value=56 Score=28.82 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=43.8
Q ss_pred CCCchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEee
Q 006771 120 QRNSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVK 199 (632)
Q Consensus 120 ~~rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~ 199 (632)
..-..=|.||..|+.. .+++|=.||.+....- ..+.+ -|-=.-++.|++||||.+
T Consensus 6 ~lt~~e~~vL~~L~~~----~~~~t~~el~~~l~~~----~~~~~-----------------~Tvt~~l~rLe~kGlv~r 60 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSR----TEPQTVRQVHEALSAR----RDLAY-----------------TTVMAVLQRLAKKNLVLQ 60 (138)
T ss_dssp GCCHHHHHHHHHHHTC----SSCEEHHHHHHHHTTT----CCCCH-----------------HHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHHHHhc----CCCCCHHHHHHHHhcc----CCCCH-----------------HHHHHHHHHHHHCCCEEE
Confidence 3445678999999874 2468999999864321 00110 133345678899999986
Q ss_pred e--cCCCcee--cChhHH
Q 006771 200 S--SCPAKYM--LTPGGR 213 (632)
Q Consensus 200 ~--grP~rY~--LTdeG~ 213 (632)
. ||...|. ||++|.
T Consensus 61 ~~~~r~~~~~~~lt~~~~ 78 (138)
T 2g9w_A 61 IRDDRAHRYAPVHGRDEL 78 (138)
T ss_dssp EC---CCEEEESSCHHHH
T ss_pred EecCCeEEEEeCCCHHHH
Confidence 5 5544675 788886
No 198
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=25.64 E-value=25 Score=30.46 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=26.5
Q ss_pred ccchhhHHHHhcCcEeee--cCCCceecChhHHH
Q 006771 183 SGWSCMKTLITKGLVVKS--SCPAKYMLTPGGRE 214 (632)
Q Consensus 183 taWsSmktLi~k~LV~~~--grP~rY~LTdeG~e 214 (632)
|.+.-++.|.+.|||... |+-..|.||++|..
T Consensus 50 tvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~ 83 (118)
T 2jsc_A 50 NVSNHLSCLRGCGLVVATYEGRQVRYALADSHLA 83 (118)
T ss_dssp HHHHHHHHHTTTTSEEEEECSSSEEEEESSHHHH
T ss_pred HHHHHHHHHHHCCceEEEEECCEEEEEEChHHHH
Confidence 678899999999999854 55557999999764
No 199
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=25.41 E-value=35 Score=29.82 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=28.8
Q ss_pred ccchhhHHHHhcCcEee--ecCCCceecChhHH-HHHHHH
Q 006771 183 SGWSCMKTLITKGLVVK--SSCPAKYMLTPGGR-EAAREC 219 (632)
Q Consensus 183 taWsSmktLi~k~LV~~--~grP~rY~LTdeG~-elA~~l 219 (632)
+.+.-++.|.+.|||.. .|+...|.||+++. ++++.+
T Consensus 75 tvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l~~~~~~l 114 (122)
T 1r1t_A 75 AVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQNA 114 (122)
T ss_dssp HHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHH
Confidence 67888999999999985 47766899999984 344443
No 200
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=25.41 E-value=46 Score=28.40 Aligned_cols=73 Identities=4% Similarity=0.048 Sum_probs=44.5
Q ss_pred CCchHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee
Q 006771 121 RNSVAYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS 200 (632)
Q Consensus 121 ~rSGaYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~ 200 (632)
.-.+=|.||..|+.. +++|=.||.+....- ..+.+ -|-=.-++.|++||||.+.
T Consensus 8 Lt~~q~~vL~~L~~~-----~~~t~~el~~~l~~~----~~~~~-----------------~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 8 ISMAEWDVMNIIWDK-----KSVSANEIVVEIQKY----KEVSD-----------------KTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp CCHHHHHHHHHHHHS-----SSEEHHHHHHHHHTT----SCCCH-----------------HHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhc-----CCCCHHHHHHHHhhc----CCCCh-----------------hhHHHHHHHHHHCCceEEE
Confidence 334578999999874 368999998875421 00110 1233456788999999865
Q ss_pred --cCCCcee-cChhHHHHHHHH
Q 006771 201 --SCPAKYM-LTPGGREAAREC 219 (632)
Q Consensus 201 --grP~rY~-LTdeG~elA~~l 219 (632)
||-..|. +|.+|..++..+
T Consensus 62 ~~~r~~~~~~~~~~~~~~~~~~ 83 (126)
T 1sd4_A 62 KSENIYFYSSNIKEDDIKMKTA 83 (126)
T ss_dssp EETTEEEEEECSCHHHHHHHHH
T ss_pred eCCCeEEEEEecCHHHHHHHHH
Confidence 5533464 456665544443
No 201
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=23.79 E-value=32 Score=33.78 Aligned_cols=21 Identities=29% Similarity=0.798 Sum_probs=0.0
Q ss_pred hhhhccccchHHHHHHHHHHh
Q 006771 67 KDLSQVKGVGKWILKLMQEFF 87 (632)
Q Consensus 67 k~l~~lkG~G~~i~~~L~~~~ 87 (632)
++|.+|+|||+|++..+--|+
T Consensus 138 ~~L~~lpGIG~kTA~~ill~a 158 (233)
T 2h56_A 138 EKLTAIKGIGQWTAEMFMMFS 158 (233)
T ss_dssp HHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHhCCCcCHHHHHHHHHHh
No 202
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=23.70 E-value=36 Score=26.59 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=18.6
Q ss_pred hhhhccccchHHHHHHHHHHhh
Q 006771 67 KDLSQVKGVGKWILKLMQEFFE 88 (632)
Q Consensus 67 k~l~~lkG~G~~i~~~L~~~~~ 88 (632)
+.|..|+|||++-.+.|=.||.
T Consensus 4 s~L~~IpGIG~kr~~~LL~~Fg 25 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMHHVK 25 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHHHCS
T ss_pred hHHHcCCCCCHHHHHHHHHHcC
Confidence 4577899999999999877775
No 203
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=23.37 E-value=39 Score=31.49 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=23.3
Q ss_pred CChhhhhccccchHHHHHHHHHHhhcC
Q 006771 64 KTLKDLSQVKGVGKWILKLMQEFFETD 90 (632)
Q Consensus 64 ~~~k~l~~lkG~G~~i~~~L~~~~~~~ 90 (632)
.+.++|..|+|||+.+++-..-||-..
T Consensus 101 ~~~~~L~~LpGVG~yTAdav~~F~~~e 127 (161)
T 4e9f_A 101 KQWKYPIELHGIGKYGNDSYRIFCVNE 127 (161)
T ss_dssp SCCSSGGGSTTCCHHHHHHHHHHTSSC
T ss_pred CChhhhhcCCCchHHHHHHHHHHHCCC
Confidence 467899999999999999988888653
No 204
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=23.25 E-value=43 Score=28.88 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHhcCcEeee---c
Q 006771 125 AYALLITLYRGTTNGNEFMRKQDLIDAAEASGLSHTPIMPEKGKGKPRQFGSSPRDWYSGWSCMKTLITKGLVVKS---S 201 (632)
Q Consensus 125 aYAiLlaL~~~~~~~~~~mtK~eLi~~Aq~~~~ss~~~~p~~~~~~~~~~~~~~~~fYtaWsSmktLi~k~LV~~~---g 201 (632)
.+.+|..|+... +++|=.||.+... +++ -|...-+++|.++|||.+. +
T Consensus 28 ~~~il~~L~~~~----~~~t~~ela~~l~--------~~~-----------------stvs~~l~~L~~~G~v~r~~~~~ 78 (152)
T 1ku9_A 28 VGAVYAILYLSD----KPLTISDIMEELK--------ISK-----------------GNVSMSLKKLEELGFVRKVWIKG 78 (152)
T ss_dssp HHHHHHHHHHCS----SCEEHHHHHHHHT--------CCH-----------------HHHHHHHHHHHHTTSEEEECCTT
T ss_pred HHHHHHHHHHcC----CCCCHHHHHHHHC--------cCH-----------------HHHHHHHHHHHHCCCEEEEecCC
Confidence 456777775431 4588888777532 211 1678889999999999986 3
Q ss_pred CCCceecChhHHHHHHHH
Q 006771 202 CPAKYMLTPGGREAAREC 219 (632)
Q Consensus 202 rP~rY~LTdeG~elA~~l 219 (632)
.+..|.++..|.+....+
T Consensus 79 d~r~~~~~~~~~~~~~~~ 96 (152)
T 1ku9_A 79 ERKNYYEAVDGFSSIKDI 96 (152)
T ss_dssp CSSCEEEECCHHHHHHHH
T ss_pred CceEEEeecchHHHHHHH
Confidence 444688887776655543
No 205
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=23.15 E-value=38 Score=32.96 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=0.0
Q ss_pred CChhhhhccccchHHHHHHHHHHh
Q 006771 64 KTLKDLSQVKGVGKWILKLMQEFF 87 (632)
Q Consensus 64 ~~~k~l~~lkG~G~~i~~~L~~~~ 87 (632)
...++|.+|+|||+|++..+--|+
T Consensus 118 ~~~~~L~~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 118 VTREWLLDQKGIGKESADAILCYA 141 (218)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHH
No 206
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=21.81 E-value=71 Score=37.19 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=36.8
Q ss_pred CCCCchhHHHHHHHHHHHHhccCCCCCChhhhhccccchHHHHHHHHHHhhcCCC
Q 006771 38 PKGLSENIDMTLSKAYNNICDAKNPIKTLKDLSQVKGVGKWILKLMQEFFETDSG 92 (632)
Q Consensus 38 ~~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~l~~lkG~G~~i~~~L~~~~~~~~~ 92 (632)
..|++...+ +++=.-+..-++|.+.+||+.++|||++....+..|+.-.+.
T Consensus 513 v~GiG~~~A----~~Iv~yR~~~G~f~sr~~L~~V~giG~k~~ekl~~FL~i~G~ 563 (785)
T 3bzc_A 513 ISGLNSTLA----QNIVAHRDANGAFRTRDELKKVSRLGEKTFEQAAGFLRVMNG 563 (785)
T ss_dssp STTCCHHHH----HHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHGGGEECTTS
T ss_pred cCCCCHHHH----HHHHHHHHhcCCCCCHHHHHhcCCCCHHHHHHhhheEEECCc
Confidence 346654333 332223334589999999999999999999999999876554
No 207
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=21.54 E-value=59 Score=32.08 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=33.3
Q ss_pred ccchhhHHHHhcCcEeeecCCCceecChhHHHHHHHHHhh
Q 006771 183 SGWSCMKTLITKGLVVKSSCPAKYMLTPGGREAARECLSR 222 (632)
Q Consensus 183 taWsSmktLi~k~LV~~~grP~rY~LTdeG~elA~~l~~~ 222 (632)
|...-++||.+.|||.+..+- +|.|+....+++......
T Consensus 54 tv~r~l~tL~~~G~v~~~~~~-~Y~lg~~~~~lg~~~~~~ 92 (260)
T 2o0y_A 54 TVVRLVATMCARSVLTSRADG-SYSLGPEMLRWVRLAGRT 92 (260)
T ss_dssp HHHHHHHHHHHTTSEEECTTS-CEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEECCCC-eEEecHHHHHHHHHHHcc
Confidence 678889999999999987554 999999999999876543
No 208
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=21.46 E-value=28 Score=35.59 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhC--CCCCchhHHHHHHHHHHHHhccCCCCCChhhhhccccchHHHHHHHHHHhh
Q 006771 21 EELAMYMLQKRQEMAET--PKGLSENIDMTLSKAYNNICDAKNPIKTLKDLSQVKGVGKWILKLMQEFFE 88 (632)
Q Consensus 21 ~~l~~~~~ew~~e~~e~--~~g~~~~~~~ty~kA~~sl~~~p~~~~~~k~l~~lkG~G~~i~~~L~~~~~ 88 (632)
+.+...+..|+|.-.+. ..|.-+ ..|..+--.-.....||.++.||..|+||.+.+..+|..|+.
T Consensus 113 ~~la~~i~dw~D~d~~~~~~~GaE~---~~Y~~~~~~y~~~n~~~~~~~EL~~v~G~~~~~~~~l~p~vt 179 (298)
T 3ci0_K 113 ELIAESLWEFIDEDRSVQTRLGRED---SEYLARSVPFYAANQPLADISEMRVVQGMDAGLYQKLKPLVC 179 (298)
T ss_dssp HHHHHHHHHHHSSSSSCCSSSCCCH---HHHHTSSSCBCCCCSCCSSGGGGGGSTTCCHHHHHHHTTTEE
T ss_pred HHHHHHHHHHhcCCCCccCCCCccc---cchhhcCCCCCCCCCCCCCHHHHHhccCCCHHHHHhhcCeEE
Confidence 56788888888764431 224422 223221111234567999999999999999999999988854
No 209
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=21.35 E-value=64 Score=25.94 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=19.0
Q ss_pred HHHHhcCCCCCHHHHHHHHHh
Q 006771 564 AVQLMQVPQVTEEIAITVLDL 584 (632)
Q Consensus 564 ~~mLm~IpGVs~ekA~~I~~~ 584 (632)
.+.|+.|+|++.++|..|+.+
T Consensus 38 ~~eL~~I~G~dE~~a~~l~~~ 58 (70)
T 1u9l_A 38 MKELLEIEGLDEPTVEALRER 58 (70)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHhhccCCCHHHHHHHHHH
Confidence 467999999999999999986
No 210
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=21.12 E-value=65 Score=33.07 Aligned_cols=27 Identities=7% Similarity=-0.042 Sum_probs=24.1
Q ss_pred cCCCCCHHHHHHHHHhcCCHHHHH-HHHh
Q 006771 569 QVPQVTEEIAITVLDLYPTLLSLA-HAYS 596 (632)
Q Consensus 569 ~IpGVs~ekA~~I~~~ypTp~~L~-~Ay~ 596 (632)
.|||||+..|..|++. +|+..++ +..+
T Consensus 229 GvpGiG~ktA~kli~~-gsle~i~~~~~~ 256 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS-GVAKDVLKKEVE 256 (326)
T ss_dssp TTTTCCHHHHHHHHHH-TCHHHHHHHHST
T ss_pred CCCCcCHHHHHHHHHc-CCHHHHHHHHHh
Confidence 6899999999999999 9999998 6654
No 211
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=20.28 E-value=36 Score=34.64 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=0.0
Q ss_pred hhhhccccchHHHHHHH
Q 006771 67 KDLSQVKGVGKWILKLM 83 (632)
Q Consensus 67 k~l~~lkG~G~~i~~~L 83 (632)
++|.+|+|||+|++..+
T Consensus 211 ~~L~~lpGIG~~TA~~i 227 (290)
T 3i0w_A 211 EELKKFMGVGPQVADCI 227 (290)
T ss_dssp HHHTTSTTCCHHHHHHH
T ss_pred HHHHhCCCcCHHHHHHH
Done!