Query 006774
Match_columns 632
No_of_seqs 597 out of 2507
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 14:18:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3437 Response regulator con 100.0 1.8E-34 3.9E-39 302.4 13.9 263 32-367 13-287 (360)
2 COG0745 OmpR Response regulato 99.8 2.6E-19 5.6E-24 181.6 16.3 119 34-155 1-121 (229)
3 COG4566 TtrR Response regulato 99.8 9.3E-19 2E-23 170.3 14.0 168 33-203 4-172 (202)
4 COG4565 CitB Response regulato 99.8 9.5E-18 2E-22 166.1 18.7 119 34-154 1-122 (224)
5 COG4753 Response regulator con 99.8 1.5E-18 3.2E-23 190.4 13.7 118 34-153 2-123 (475)
6 COG2197 CitB Response regulato 99.8 8.3E-18 1.8E-22 168.4 17.5 170 34-205 1-180 (211)
7 COG2204 AtoC Response regulato 99.7 4.4E-17 9.6E-22 179.0 16.8 120 33-154 4-124 (464)
8 PRK15347 two component system 99.7 3.2E-16 7E-21 184.7 23.9 117 33-151 690-811 (921)
9 PF00072 Response_reg: Respons 99.7 2.8E-16 6E-21 137.8 15.8 110 36-147 1-112 (112)
10 PRK11466 hybrid sensory histid 99.7 9.2E-16 2E-20 181.3 18.4 151 1-152 630-800 (914)
11 PRK11091 aerobic respiration c 99.7 1.6E-15 3.5E-20 176.9 17.9 149 1-152 473-645 (779)
12 TIGR02956 TMAO_torS TMAO reduc 99.7 2E-15 4.2E-20 179.3 18.3 150 1-152 651-823 (968)
13 PRK10840 transcriptional regul 99.6 4.4E-15 9.5E-20 146.8 17.4 171 33-205 3-182 (216)
14 PRK10841 hybrid sensory kinase 99.6 4.8E-15 1E-19 176.9 19.7 119 33-153 801-920 (924)
15 PRK10046 dpiA two-component re 99.6 8.8E-15 1.9E-19 146.2 17.6 121 31-153 2-125 (225)
16 PRK09959 hybrid sensory histid 99.6 5.6E-15 1.2E-19 179.8 18.4 149 1-151 904-1075(1197)
17 COG0784 CheY FOG: CheY-like re 99.6 2.3E-14 5E-19 128.6 17.0 119 32-151 4-125 (130)
18 PRK11107 hybrid sensory histid 99.6 9.4E-15 2E-19 172.2 18.3 118 33-152 667-787 (919)
19 PRK09483 response regulator; P 99.6 3.5E-14 7.6E-19 137.9 18.7 168 34-203 2-178 (217)
20 PRK10529 DNA-binding transcrip 99.6 3.9E-14 8.4E-19 138.6 17.4 118 34-153 2-119 (225)
21 PRK11173 two-component respons 99.6 5.1E-14 1.1E-18 139.8 17.3 118 34-153 4-121 (237)
22 PRK10643 DNA-binding transcrip 99.6 9.9E-14 2.2E-18 134.4 18.9 118 34-153 1-119 (222)
23 PLN03029 type-a response regul 99.6 4.2E-14 9E-19 142.4 16.7 122 32-153 7-149 (222)
24 PRK10336 DNA-binding transcrip 99.6 8.7E-14 1.9E-18 134.8 18.1 118 34-153 1-119 (219)
25 PRK09958 DNA-binding transcrip 99.6 1E-13 2.2E-18 133.3 18.3 162 34-197 1-167 (204)
26 COG3706 PleD Response regulato 99.6 3.9E-14 8.4E-19 154.9 17.2 122 32-155 131-255 (435)
27 PRK10816 DNA-binding transcrip 99.6 7E-14 1.5E-18 136.9 17.2 118 34-153 1-119 (223)
28 PRK10766 DNA-binding transcrip 99.6 9.2E-14 2E-18 135.6 17.1 118 34-153 3-120 (221)
29 PRK11517 transcriptional regul 99.6 1.6E-13 3.5E-18 133.6 18.5 118 34-153 1-118 (223)
30 PRK09836 DNA-binding transcrip 99.6 1.1E-13 2.4E-18 135.8 17.3 117 34-152 1-118 (227)
31 PRK10360 DNA-binding transcrip 99.6 7.7E-14 1.7E-18 133.3 15.4 159 34-198 2-162 (196)
32 PRK10430 DNA-binding transcrip 99.6 2.7E-13 5.9E-18 136.5 20.0 118 34-151 2-122 (239)
33 TIGR02154 PhoB phosphate regul 99.5 2.2E-13 4.8E-18 132.0 17.1 119 33-153 2-123 (226)
34 PRK10701 DNA-binding transcrip 99.5 2.1E-13 4.6E-18 135.4 17.1 118 34-153 2-119 (240)
35 PRK10161 transcriptional regul 99.5 2.4E-13 5.1E-18 133.6 17.3 117 34-152 3-122 (229)
36 COG3947 Response regulator con 99.5 2.7E-14 5.8E-19 147.0 10.3 115 34-152 1-116 (361)
37 PRK10955 DNA-binding transcrip 99.5 2.6E-13 5.7E-18 132.8 16.8 117 34-153 2-118 (232)
38 CHL00148 orf27 Ycf27; Reviewed 99.5 3.3E-13 7.2E-18 132.8 17.5 119 33-153 6-124 (240)
39 PRK13856 two-component respons 99.5 2.7E-13 5.9E-18 135.4 17.0 117 35-153 3-120 (241)
40 PRK09468 ompR osmolarity respo 99.5 4E-13 8.7E-18 133.1 17.2 119 33-153 5-124 (239)
41 PRK09935 transcriptional regul 99.5 9.3E-13 2E-17 126.5 19.1 165 33-199 3-175 (210)
42 PRK11083 DNA-binding response 99.5 4.3E-13 9.3E-18 130.5 16.7 118 34-153 4-122 (228)
43 PRK11475 DNA-binding transcrip 99.5 1.5E-13 3.3E-18 137.5 13.8 155 46-204 3-165 (207)
44 TIGR03787 marine_sort_RR prote 99.5 5.5E-13 1.2E-17 130.6 17.4 117 35-153 2-121 (227)
45 TIGR01387 cztR_silR_copR heavy 99.5 8.5E-13 1.9E-17 127.5 18.4 117 36-154 1-118 (218)
46 COG4567 Response regulator con 99.5 1.7E-13 3.7E-18 129.4 12.6 112 35-148 11-123 (182)
47 PRK13837 two-component VirA-li 99.5 6.5E-13 1.4E-17 156.9 19.0 150 1-153 643-815 (828)
48 KOG0519 Sensory transduction h 99.5 2.3E-13 5E-18 159.8 14.8 119 31-150 664-784 (786)
49 PRK15411 rcsA colanic acid cap 99.5 8.7E-13 1.9E-17 131.7 16.6 162 34-205 1-169 (207)
50 PRK10100 DNA-binding transcrip 99.5 7.4E-13 1.6E-17 133.4 14.5 167 33-205 10-187 (216)
51 PRK15479 transcriptional regul 99.5 4.4E-12 9.5E-17 122.8 19.1 118 34-153 1-119 (221)
52 PRK11697 putative two-componen 99.5 1.7E-12 3.6E-17 129.3 16.3 115 34-152 2-118 (238)
53 PRK14084 two-component respons 99.4 2.3E-12 4.9E-17 129.3 16.5 115 34-152 1-118 (246)
54 PRK15369 two component system 99.4 6.7E-12 1.5E-16 119.0 18.8 167 33-201 3-177 (211)
55 TIGR02875 spore_0_A sporulatio 99.4 2.7E-12 5.8E-17 130.6 16.6 118 33-152 2-124 (262)
56 PRK09581 pleD response regulat 99.4 7.6E-13 1.7E-17 142.5 12.7 118 32-152 154-274 (457)
57 PRK10651 transcriptional regul 99.4 9.3E-12 2E-16 119.6 18.6 168 32-201 5-183 (216)
58 PRK09390 fixJ response regulat 99.4 2.8E-12 6.1E-17 121.0 14.3 119 32-152 2-121 (202)
59 PRK10403 transcriptional regul 99.4 7.8E-12 1.7E-16 119.7 17.1 164 33-198 6-178 (215)
60 PRK10710 DNA-binding transcrip 99.4 7E-12 1.5E-16 123.4 17.1 117 34-152 11-127 (240)
61 PLN03162 golden-2 like transcr 99.4 4.6E-13 1E-17 140.1 8.9 63 217-279 232-294 (526)
62 PRK10365 transcriptional regul 99.4 2.6E-12 5.6E-17 140.4 15.2 119 32-152 4-123 (441)
63 PRK11361 acetoacetate metaboli 99.4 4.4E-12 9.5E-17 139.3 16.6 119 31-151 2-121 (457)
64 PRK13557 histidine kinase; Pro 99.4 6.8E-12 1.5E-16 138.1 17.6 150 1-151 362-534 (540)
65 PRK15115 response regulator Gl 99.4 5.1E-12 1.1E-16 138.6 16.3 118 33-152 5-123 (444)
66 PRK10923 glnG nitrogen regulat 99.4 6.3E-12 1.4E-16 138.9 17.1 117 34-152 4-121 (469)
67 TIGR02915 PEP_resp_reg putativ 99.4 7.5E-12 1.6E-16 137.3 15.9 112 36-151 1-118 (445)
68 PRK12555 chemotaxis-specific m 99.4 9.2E-12 2E-16 132.4 15.8 115 34-150 1-128 (337)
69 PRK13435 response regulator; P 99.3 2.9E-11 6.3E-16 111.5 15.6 118 32-154 4-123 (145)
70 PRK10610 chemotaxis regulatory 99.3 7.1E-11 1.5E-15 101.6 16.9 119 32-152 4-126 (129)
71 TIGR01818 ntrC nitrogen regula 99.3 1.6E-11 3.5E-16 135.2 15.8 115 36-152 1-116 (463)
72 PRK09581 pleD response regulat 99.3 5E-11 1.1E-15 128.4 17.4 118 34-153 3-123 (457)
73 PRK00742 chemotaxis-specific m 99.3 6.1E-11 1.3E-15 126.9 16.3 104 33-138 3-110 (354)
74 PRK13558 bacterio-opsin activa 99.3 5.7E-11 1.2E-15 136.5 15.2 118 33-152 7-127 (665)
75 COG2201 CheB Chemotaxis respon 99.3 4.5E-11 9.8E-16 127.6 13.1 104 33-138 1-108 (350)
76 PRK09191 two-component respons 99.2 6.4E-10 1.4E-14 112.2 15.6 116 33-152 137-254 (261)
77 COG3707 AmiR Response regulato 99.1 1.9E-10 4.1E-15 113.1 10.5 119 33-153 5-124 (194)
78 cd00156 REC Signal receiver do 99.1 2E-09 4.4E-14 87.9 12.8 111 37-149 1-112 (113)
79 TIGR01557 myb_SHAQKYF myb-like 99.0 4.4E-10 9.6E-15 90.7 6.3 54 220-273 1-55 (57)
80 COG2206 c-di-GMP phosphodieste 99.0 1.6E-10 3.5E-15 124.1 3.4 73 258-333 143-218 (344)
81 PRK10693 response regulator of 99.0 4.6E-09 1E-13 110.7 12.5 90 62-153 2-93 (303)
82 PRK15029 arginine decarboxylas 98.9 7.4E-09 1.6E-13 120.9 13.9 119 34-154 1-135 (755)
83 COG3279 LytT Response regulato 98.8 1.8E-08 3.8E-13 103.6 10.6 115 34-152 2-119 (244)
84 PRK10618 phosphotransfer inter 98.0 1E-05 2.2E-10 97.2 6.9 81 1-89 640-737 (894)
85 PRK11107 hybrid sensory histid 98.0 7.8E-05 1.7E-09 88.6 14.0 144 1-150 486-650 (919)
86 COG3706 PleD Response regulato 97.8 1.9E-05 4.2E-10 87.3 5.4 94 57-153 12-105 (435)
87 PF06490 FleQ: Flagellar regul 97.3 0.0021 4.5E-08 58.5 10.0 106 35-149 1-107 (109)
88 PRK12704 phosphodiesterase; Pr 97.2 0.00059 1.3E-08 77.7 7.4 44 108-151 251-296 (520)
89 smart00448 REC cheY-homologous 97.2 0.0025 5.4E-08 44.8 8.1 55 34-90 1-55 (55)
90 PF03709 OKR_DC_1_N: Orn/Lys/A 96.3 0.04 8.7E-07 50.4 10.2 105 46-152 6-114 (115)
91 cd02071 MM_CoA_mut_B12_BD meth 95.9 0.2 4.4E-06 46.0 13.4 105 40-146 10-120 (122)
92 PRK02261 methylaspartate mutas 95.5 0.41 8.9E-06 45.4 13.8 115 33-150 3-134 (137)
93 cd02067 B12-binding B12 bindin 94.5 0.45 9.7E-06 43.1 10.7 94 40-135 10-109 (119)
94 TIGR00640 acid_CoA_mut_C methy 93.8 1.5 3.3E-05 41.3 13.1 110 40-151 13-128 (132)
95 PRK15399 lysine decarboxylase 93.5 0.69 1.5E-05 54.9 12.3 118 34-155 1-126 (713)
96 PRK15400 lysine decarboxylase 92.7 0.89 1.9E-05 54.0 11.7 117 34-154 1-125 (714)
97 TIGR03815 CpaE_hom_Actino heli 90.3 0.79 1.7E-05 48.8 7.4 84 58-150 2-86 (322)
98 TIGR00295 conserved hypothetic 90.3 0.22 4.7E-06 48.5 2.8 45 262-309 12-58 (164)
99 PRK07152 nadD putative nicotin 90.2 0.11 2.5E-06 56.1 1.0 76 246-328 170-259 (342)
100 TIGR01501 MthylAspMutase methy 90.1 7.3 0.00016 37.0 12.9 108 42-151 14-133 (134)
101 cd04728 ThiG Thiazole synthase 89.3 4.1 9E-05 42.5 11.4 111 33-151 93-225 (248)
102 PRK15320 transcriptional activ 89.1 6.3 0.00014 40.1 12.0 162 35-204 3-195 (251)
103 TIGR00277 HDIG uncharacterized 88.9 0.24 5.1E-06 40.7 1.7 41 263-309 4-44 (80)
104 PRK00208 thiG thiazole synthas 88.7 4.3 9.4E-05 42.4 11.0 112 33-152 93-226 (250)
105 PF01966 HD: HD domain; Inter 88.3 0.15 3.2E-06 44.8 0.1 41 265-309 2-42 (122)
106 PF02310 B12-binding: B12 bind 87.8 6.6 0.00014 35.1 10.6 91 42-135 13-111 (121)
107 PRK12703 tRNA 2'-O-methylase; 87.0 5.6 0.00012 43.4 11.2 72 35-114 32-105 (339)
108 PF10087 DUF2325: Uncharacteri 84.5 7.2 0.00016 34.4 8.8 90 35-125 1-93 (97)
109 PRK00043 thiE thiamine-phospha 83.4 17 0.00038 35.7 12.1 69 62-134 110-187 (212)
110 PRK01130 N-acetylmannosamine-6 83.2 22 0.00048 35.7 12.9 85 49-136 110-203 (221)
111 COG4999 Uncharacterized domain 82.2 6.5 0.00014 36.9 7.6 107 32-146 10-121 (140)
112 cd02070 corrinoid_protein_B12- 81.9 17 0.00038 36.2 11.5 98 33-135 82-191 (201)
113 cd02072 Glm_B12_BD B12 binding 81.6 38 0.00083 32.0 12.8 103 42-147 12-127 (128)
114 TIGR03319 YmdA_YtgF conserved 79.8 1.1 2.4E-05 51.3 2.4 66 235-307 299-367 (514)
115 COG1418 Predicted HD superfami 78.2 1.6 3.5E-05 44.7 2.7 43 260-308 33-75 (222)
116 CHL00162 thiG thiamin biosynth 77.8 39 0.00084 35.7 12.5 115 33-152 107-240 (267)
117 PRK09426 methylmalonyl-CoA mut 77.2 27 0.00059 41.9 12.8 116 34-151 583-708 (714)
118 cd04729 NanE N-acetylmannosami 77.0 32 0.00069 34.6 11.7 72 61-135 128-206 (219)
119 cd02069 methionine_synthase_B1 76.8 30 0.00065 35.2 11.4 102 32-135 87-201 (213)
120 PRK10558 alpha-dehydro-beta-de 75.5 31 0.00067 36.1 11.4 101 47-149 8-113 (256)
121 PF01408 GFO_IDH_MocA: Oxidore 74.2 62 0.0013 28.6 12.4 36 117-152 75-112 (120)
122 TIGR03401 cyanamide_fam HD dom 73.7 2.6 5.6E-05 43.4 2.8 58 263-328 55-116 (228)
123 COG2185 Sbm Methylmalonyl-CoA 73.0 61 0.0013 31.3 11.6 116 33-150 12-137 (143)
124 TIGR03239 GarL 2-dehydro-3-deo 73.0 43 0.00093 34.9 11.6 99 49-149 3-106 (249)
125 PRK00106 hypothetical protein; 71.7 3.4 7.4E-05 47.6 3.4 66 235-307 320-388 (535)
126 PRK08385 nicotinate-nucleotide 71.5 35 0.00076 36.3 10.7 94 35-133 156-257 (278)
127 TIGR01334 modD putative molybd 71.3 17 0.00036 38.7 8.2 94 35-132 158-260 (277)
128 PRK10128 2-keto-3-deoxy-L-rham 71.3 46 0.00099 35.2 11.4 100 48-149 8-112 (267)
129 TIGR02311 HpaI 2,4-dihydroxyhe 71.3 49 0.0011 34.4 11.6 99 49-149 3-106 (249)
130 PRK03958 tRNA 2'-O-methylase; 71.2 41 0.00088 33.6 10.3 78 34-114 32-111 (176)
131 PRK12705 hypothetical protein; 70.3 5.1 0.00011 46.0 4.4 65 236-307 294-361 (508)
132 PRK05718 keto-hydroxyglutarate 68.3 56 0.0012 33.3 11.0 90 51-145 10-103 (212)
133 PRK12724 flagellar biosynthesi 67.8 24 0.00051 39.9 8.8 100 32-133 251-365 (432)
134 PRK07896 nicotinate-nucleotide 67.7 25 0.00055 37.6 8.7 93 36-132 173-271 (289)
135 cd02068 radical_SAM_B12_BD B12 67.0 57 0.0012 29.7 9.9 103 45-149 4-110 (127)
136 TIGR02370 pyl_corrinoid methyl 66.8 39 0.00084 33.8 9.4 96 34-134 85-192 (197)
137 cd00564 TMP_TenI Thiamine mono 66.4 48 0.001 31.7 9.8 70 62-135 101-178 (196)
138 PF01729 QRPTase_C: Quinolinat 66.1 19 0.00041 35.4 6.9 95 35-133 52-153 (169)
139 PRK11889 flhF flagellar biosyn 65.3 30 0.00064 39.1 8.9 56 32-87 268-328 (436)
140 TIGR00343 pyridoxal 5'-phospha 65.3 31 0.00066 36.9 8.6 61 93-153 184-251 (287)
141 TIGR01596 cas3_HD CRISPR-assoc 65.1 2.5 5.5E-05 40.3 0.6 42 266-309 3-48 (177)
142 cd04727 pdxS PdxS is a subunit 64.8 34 0.00074 36.5 8.8 89 61-152 117-247 (283)
143 PRK14974 cell division protein 64.6 35 0.00076 37.2 9.2 101 32-134 167-286 (336)
144 TIGR00007 phosphoribosylformim 63.8 83 0.0018 31.7 11.3 67 66-134 147-217 (230)
145 cd00077 HDc Metal dependent ph 63.4 3.1 6.7E-05 36.4 0.8 43 264-309 3-45 (145)
146 PRK05703 flhF flagellar biosyn 62.9 31 0.00067 38.8 8.7 92 32-124 250-350 (424)
147 PF01596 Methyltransf_3: O-met 62.9 31 0.00067 34.9 7.9 84 4-88 37-130 (205)
148 PF03602 Cons_hypoth95: Conser 62.7 29 0.00064 34.4 7.6 69 34-102 66-138 (183)
149 cd04730 NPD_like 2-Nitropropan 62.1 1.1E+02 0.0023 30.8 11.8 80 53-135 98-185 (236)
150 PRK05848 nicotinate-nucleotide 62.0 32 0.0007 36.5 8.1 96 35-134 154-256 (273)
151 COG0512 PabA Anthranilate/para 62.0 13 0.00028 37.5 4.8 76 34-113 2-81 (191)
152 cd04724 Tryptophan_synthase_al 60.8 35 0.00077 35.2 8.1 56 94-149 64-125 (242)
153 PLN02591 tryptophan synthase 59.8 31 0.00067 36.1 7.5 58 93-150 65-128 (250)
154 TIGR03151 enACPred_II putative 59.4 80 0.0017 33.9 10.7 84 50-136 102-191 (307)
155 TIGR02026 BchE magnesium-proto 57.4 1.2E+02 0.0025 34.8 12.2 107 42-151 21-137 (497)
156 TIGR00488 putative HD superfam 57.4 5 0.00011 38.5 1.1 40 262-307 7-46 (158)
157 PF14097 SpoVAE: Stage V sporu 57.0 1E+02 0.0022 30.7 9.9 80 36-115 3-94 (180)
158 PRK12726 flagellar biosynthesi 56.9 55 0.0012 36.7 9.1 57 32-88 233-294 (407)
159 PRK11840 bifunctional sulfur c 56.8 1.9E+02 0.0042 31.6 12.9 114 33-151 167-299 (326)
160 TIGR00308 TRM1 tRNA(guanine-26 56.7 2E+02 0.0042 32.0 13.4 111 34-152 70-190 (374)
161 PRK13111 trpA tryptophan synth 55.8 39 0.00085 35.5 7.5 57 93-149 75-138 (258)
162 PRK06015 keto-hydroxyglutarate 55.6 80 0.0017 32.1 9.4 60 84-144 32-91 (201)
163 TIGR00262 trpA tryptophan synt 54.4 46 0.001 34.8 7.7 57 93-149 73-136 (256)
164 PRK06096 molybdenum transport 54.0 41 0.0009 35.9 7.4 94 36-133 160-262 (284)
165 cd03114 ArgK-like The function 53.6 14 0.0003 35.2 3.5 44 66-115 80-123 (148)
166 smart00471 HDc Metal dependent 53.2 7.2 0.00016 33.4 1.3 43 262-309 3-45 (124)
167 PF07688 KaiA: KaiA domain; I 52.9 54 0.0012 34.7 7.7 113 35-153 2-120 (283)
168 cd02065 B12-binding_like B12 b 52.6 83 0.0018 28.0 8.2 71 40-112 10-86 (125)
169 COG4122 Predicted O-methyltran 52.2 42 0.0009 34.6 6.8 85 4-90 51-143 (219)
170 TIGR01182 eda Entner-Doudoroff 52.0 1.2E+02 0.0027 30.8 10.1 82 59-144 12-95 (204)
171 TIGR00693 thiE thiamine-phosph 51.5 1.1E+02 0.0023 30.0 9.4 70 61-134 101-179 (196)
172 PRK05749 3-deoxy-D-manno-octul 51.2 1.4E+02 0.0031 32.6 11.3 110 33-151 262-387 (425)
173 PRK07428 nicotinate-nucleotide 51.1 64 0.0014 34.5 8.3 94 35-133 168-269 (288)
174 PRK06731 flhF flagellar biosyn 50.9 63 0.0014 34.2 8.1 55 33-88 103-163 (270)
175 PF00249 Myb_DNA-binding: Myb- 50.8 62 0.0013 24.6 6.1 46 223-271 2-47 (48)
176 CHL00200 trpA tryptophan synth 50.7 51 0.0011 34.7 7.4 57 93-149 78-140 (263)
177 TIGR00064 ftsY signal recognit 50.7 68 0.0015 33.8 8.3 55 32-88 99-163 (272)
178 PLN02781 Probable caffeoyl-CoA 50.5 80 0.0017 32.3 8.7 56 33-88 93-153 (234)
179 PTZ00314 inosine-5'-monophosph 49.9 1.3E+02 0.0029 34.6 11.1 102 32-136 252-374 (495)
180 PLN02871 UDP-sulfoquinovose:DA 49.6 1.9E+02 0.004 32.3 12.1 107 33-151 290-399 (465)
181 PRK00278 trpC indole-3-glycero 49.2 3.2E+02 0.007 28.5 13.0 87 45-135 148-240 (260)
182 PRK00748 1-(5-phosphoribosyl)- 49.0 85 0.0018 31.5 8.5 67 66-134 148-219 (233)
183 TIGR01037 pyrD_sub1_fam dihydr 48.8 2.2E+02 0.0047 30.0 11.9 58 95-152 223-286 (300)
184 PRK05458 guanosine 5'-monophos 48.4 2.7E+02 0.0058 30.5 12.6 98 35-135 113-230 (326)
185 PRK13566 anthranilate synthase 48.3 70 0.0015 38.6 8.8 80 30-113 523-605 (720)
186 PRK06552 keto-hydroxyglutarate 47.8 1.8E+02 0.0039 29.7 10.6 93 51-145 8-104 (213)
187 TIGR03499 FlhF flagellar biosy 47.3 20 0.00044 37.8 3.8 54 33-87 224-280 (282)
188 cd04726 KGPDC_HPS 3-Keto-L-gul 47.3 2.8E+02 0.0061 27.0 12.0 99 33-135 77-186 (202)
189 COG0157 NadC Nicotinate-nucleo 47.3 1.3E+02 0.0028 32.3 9.6 93 35-132 160-259 (280)
190 PF09936 Methyltrn_RNA_4: SAM- 47.1 1.7E+02 0.0036 29.6 9.8 100 35-139 44-162 (185)
191 cd00331 IGPS Indole-3-glycerol 46.4 3.1E+02 0.0068 27.3 12.8 78 55-135 119-201 (217)
192 PRK05567 inosine 5'-monophosph 46.4 1.6E+02 0.0035 33.6 11.1 100 32-135 239-360 (486)
193 TIGR00262 trpA tryptophan synt 46.3 2.8E+02 0.006 29.0 12.0 104 33-136 115-228 (256)
194 cd03823 GT1_ExpE7_like This fa 46.3 3.3E+02 0.0071 27.5 12.6 66 80-151 263-328 (359)
195 PLN02274 inosine-5'-monophosph 46.1 1.5E+02 0.0032 34.3 10.7 101 32-135 259-380 (505)
196 PRK10669 putative cation:proto 46.0 1.7E+02 0.0036 33.9 11.3 92 33-133 440-533 (558)
197 PF05690 ThiG: Thiazole biosyn 46.0 1.7E+02 0.0037 30.8 10.0 115 33-151 93-225 (247)
198 cd04723 HisA_HisF Phosphoribos 45.9 1.1E+02 0.0023 31.4 8.7 68 66-135 148-218 (233)
199 PRK07649 para-aminobenzoate/an 45.9 25 0.00055 35.0 4.1 74 36-113 2-79 (195)
200 PRK07695 transcriptional regul 45.8 1.8E+02 0.0039 28.8 10.1 67 62-132 101-174 (201)
201 TIGR03088 stp2 sugar transfera 45.7 1.7E+02 0.0037 30.9 10.7 107 33-151 229-337 (374)
202 PRK13587 1-(5-phosphoribosyl)- 45.4 1.2E+02 0.0026 31.3 9.0 68 67-135 151-221 (234)
203 PF02581 TMP-TENI: Thiamine mo 44.5 1.2E+02 0.0027 29.5 8.6 70 60-133 99-175 (180)
204 TIGR01761 thiaz-red thiazoliny 43.8 2.3E+02 0.0051 31.0 11.4 104 32-151 2-113 (343)
205 PRK04302 triosephosphate isome 43.7 3.6E+02 0.0078 27.2 12.3 54 96-149 162-218 (223)
206 PRK15484 lipopolysaccharide 1, 43.6 4.6E+02 0.0099 28.4 13.9 109 33-151 224-343 (380)
207 cd06533 Glyco_transf_WecG_TagA 43.5 1.4E+02 0.003 29.1 8.7 78 32-113 45-131 (171)
208 cd00381 IMPDH IMPDH: The catal 43.3 2.5E+02 0.0054 30.4 11.5 100 32-135 105-226 (325)
209 PRK06543 nicotinate-nucleotide 43.2 3.4E+02 0.0073 29.1 12.1 91 35-132 161-262 (281)
210 PRK04180 pyridoxal biosynthesi 43.1 52 0.0011 35.4 6.0 62 93-154 190-258 (293)
211 PRK06843 inosine 5-monophospha 42.9 2.6E+02 0.0056 31.5 11.7 101 32-135 164-285 (404)
212 PF03328 HpcH_HpaI: HpcH/HpaI 42.4 1.7E+02 0.0037 29.4 9.5 83 65-149 9-106 (221)
213 PRK07259 dihydroorotate dehydr 42.0 3.4E+02 0.0073 28.6 12.1 57 95-151 223-285 (301)
214 TIGR02855 spore_yabG sporulati 42.0 2.6E+02 0.0056 30.0 10.8 103 30-136 101-226 (283)
215 PRK10416 signal recognition pa 42.0 1E+02 0.0022 33.4 8.1 55 32-88 141-205 (318)
216 PRK10119 putative hydrolase; P 41.6 13 0.00028 38.5 1.3 36 265-306 27-62 (231)
217 PRK05581 ribulose-phosphate 3- 41.6 1.6E+02 0.0035 29.1 9.1 57 80-136 132-199 (220)
218 PRK09016 quinolinate phosphori 41.4 1.4E+02 0.003 32.2 9.0 91 35-132 181-277 (296)
219 cd01568 QPRTase_NadC Quinolina 41.2 1.2E+02 0.0026 32.0 8.4 95 35-134 153-254 (269)
220 PF03808 Glyco_tran_WecB: Glyc 41.1 1.7E+02 0.0036 28.5 8.9 78 32-113 47-133 (172)
221 PRK07114 keto-hydroxyglutarate 41.1 2.9E+02 0.0064 28.5 11.0 85 58-144 18-106 (222)
222 TIGR00735 hisF imidazoleglycer 41.0 2.7E+02 0.0059 28.7 11.0 53 95-147 188-247 (254)
223 COG0742 N6-adenine-specific me 40.6 54 0.0012 33.0 5.4 53 34-87 67-122 (187)
224 PRK07028 bifunctional hexulose 40.2 5.5E+02 0.012 28.7 14.0 101 49-152 99-212 (430)
225 PRK09140 2-dehydro-3-deoxy-6-p 40.0 2.1E+02 0.0046 28.9 9.6 92 52-145 6-99 (206)
226 PF03060 NMO: Nitronate monoox 39.6 2E+02 0.0043 31.1 10.0 82 51-135 130-219 (330)
227 PRK14098 glycogen synthase; Pr 39.6 3.4E+02 0.0074 30.9 12.4 112 33-151 336-450 (489)
228 cd01573 modD_like ModD; Quinol 39.4 1.4E+02 0.0031 31.6 8.6 94 36-134 155-257 (272)
229 PLN02591 tryptophan synthase 39.1 4.8E+02 0.01 27.4 12.3 100 35-136 109-219 (250)
230 cd04732 HisA HisA. Phosphorib 39.0 4E+02 0.0087 26.6 11.6 69 65-134 147-218 (234)
231 TIGR01425 SRP54_euk signal rec 38.5 71 0.0015 36.1 6.5 99 33-133 128-245 (429)
232 PRK02083 imidazole glycerol ph 38.3 3.2E+02 0.0069 28.1 10.9 78 67-146 156-244 (253)
233 PRK06774 para-aminobenzoate sy 38.3 41 0.0009 33.1 4.2 74 36-113 2-79 (191)
234 PF05582 Peptidase_U57: YabG p 38.0 2.7E+02 0.0059 29.9 10.3 56 29-86 101-161 (287)
235 TIGR00734 hisAF_rel hisA/hisF 38.0 1.8E+02 0.0039 29.7 8.9 69 65-135 142-213 (221)
236 PRK06978 nicotinate-nucleotide 37.9 2.5E+02 0.0055 30.3 10.2 91 35-132 178-274 (294)
237 cd04722 TIM_phosphate_binding 37.9 2.4E+02 0.0051 26.4 9.3 56 79-134 136-198 (200)
238 cd03813 GT1_like_3 This family 37.7 3.1E+02 0.0067 30.8 11.6 106 34-151 325-441 (475)
239 TIGR01163 rpe ribulose-phospha 37.6 1.4E+02 0.0031 29.2 7.9 68 65-136 115-194 (210)
240 PRK06106 nicotinate-nucleotide 37.5 1.9E+02 0.004 31.0 9.1 90 36-132 167-263 (281)
241 cd00331 IGPS Indole-3-glycerol 37.2 2.7E+02 0.0059 27.7 10.0 68 82-149 48-117 (217)
242 PRK06559 nicotinate-nucleotide 36.5 2.8E+02 0.006 29.9 10.3 91 35-132 169-266 (290)
243 TIGR00095 RNA methyltransferas 36.3 3.6E+02 0.0078 26.7 10.5 68 35-102 74-144 (189)
244 PF01081 Aldolase: KDPG and KH 36.2 1E+02 0.0022 31.2 6.7 81 60-143 13-94 (196)
245 PF04321 RmlD_sub_bind: RmlD s 36.1 79 0.0017 33.1 6.1 80 34-115 1-102 (286)
246 PF00534 Glycos_transf_1: Glyc 35.8 3.6E+02 0.0077 24.9 11.0 109 33-153 47-159 (172)
247 cd04962 GT1_like_5 This family 35.4 3.4E+02 0.0074 28.2 10.9 65 80-151 271-335 (371)
248 TIGR01305 GMP_reduct_1 guanosi 35.4 1.7E+02 0.0036 32.3 8.4 57 79-135 121-178 (343)
249 PLN02716 nicotinate-nucleotide 35.1 2.4E+02 0.0053 30.6 9.6 98 35-132 172-287 (308)
250 COG1713 Predicted HD superfami 34.6 13 0.00029 37.3 0.0 37 265-307 19-55 (187)
251 COG2022 ThiG Uncharacterized e 34.1 3E+02 0.0064 29.0 9.5 115 33-151 100-232 (262)
252 PRK03659 glutathione-regulated 34.0 2E+02 0.0044 33.7 9.6 94 33-135 423-518 (601)
253 TIGR02621 cas3_GSU0051 CRISPR- 34.0 23 0.0005 43.2 1.9 42 264-309 676-717 (844)
254 PF02254 TrkA_N: TrkA-N domain 33.9 3.2E+02 0.007 23.9 10.9 93 33-134 21-115 (116)
255 PF01959 DHQS: 3-dehydroquinat 33.8 3.6E+02 0.0078 29.9 10.7 71 80-151 97-169 (354)
256 PRK09922 UDP-D-galactose:(gluc 33.6 4.7E+02 0.01 27.8 11.7 54 94-152 271-324 (359)
257 PRK13125 trpA tryptophan synth 33.5 5E+02 0.011 26.7 11.4 88 46-136 118-215 (244)
258 cd08179 NADPH_BDH NADPH-depend 33.5 3.1E+02 0.0067 30.0 10.5 63 34-101 24-100 (375)
259 PF04131 NanE: Putative N-acet 33.3 4.4E+02 0.0096 26.8 10.5 101 32-136 63-174 (192)
260 PF07652 Flavi_DEAD: Flaviviru 33.2 1.8E+02 0.004 28.3 7.5 84 32-116 32-136 (148)
261 PRK04338 N(2),N(2)-dimethylgua 32.9 5.3E+02 0.012 28.6 12.2 78 34-118 82-162 (382)
262 PRK01911 ppnK inorganic polyph 32.8 3.8E+02 0.0083 28.7 10.7 102 34-154 1-122 (292)
263 COG0673 MviM Predicted dehydro 32.7 6E+02 0.013 26.6 13.0 105 33-150 3-115 (342)
264 PRK06895 putative anthranilate 32.7 59 0.0013 32.0 4.3 31 34-64 2-32 (190)
265 cd03115 SRP The signal recogni 32.7 1E+02 0.0023 29.3 5.9 53 33-87 28-90 (173)
266 COG0421 SpeE Spermidine syntha 32.6 52 0.0011 35.1 4.1 54 34-90 101-160 (282)
267 PRK10742 putative methyltransf 32.6 3.6E+02 0.0077 28.5 10.1 58 32-92 109-177 (250)
268 TIGR00736 nifR3_rel_arch TIM-b 32.5 2.2E+02 0.0047 29.6 8.5 94 38-134 116-219 (231)
269 PLN02476 O-methyltransferase 32.4 2E+02 0.0044 30.6 8.5 56 33-88 143-203 (278)
270 cd04731 HisF The cyclase subun 32.3 2.3E+02 0.005 28.8 8.7 71 63-135 26-100 (243)
271 cd08187 BDH Butanol dehydrogen 32.3 2.9E+02 0.0063 30.3 10.0 63 34-101 29-105 (382)
272 PRK08007 para-aminobenzoate sy 32.1 57 0.0012 32.2 4.1 74 36-113 2-79 (187)
273 PRK14723 flhF flagellar biosyn 32.1 3.3E+02 0.0071 33.3 10.9 100 34-134 216-330 (767)
274 PRK00771 signal recognition pa 32.0 2.2E+02 0.0047 32.4 9.0 56 32-88 122-184 (437)
275 TIGR00566 trpG_papA glutamine 31.7 68 0.0015 31.7 4.5 74 36-113 2-79 (188)
276 PRK04296 thymidine kinase; Pro 31.6 45 0.00097 32.9 3.2 80 32-112 29-112 (190)
277 PRK14956 DNA polymerase III su 31.2 1.4E+02 0.0029 34.5 7.3 73 79-152 121-195 (484)
278 PRK15427 colanic acid biosynth 31.2 7.4E+02 0.016 27.2 13.6 107 34-151 254-369 (406)
279 PRK12723 flagellar biosynthesi 31.2 5.5E+02 0.012 28.7 11.9 101 32-133 205-318 (388)
280 PRK13585 1-(5-phosphoribosyl)- 31.2 5.6E+02 0.012 25.8 11.4 68 65-134 150-221 (241)
281 TIGR01163 rpe ribulose-phospha 31.0 4.3E+02 0.0094 25.7 10.2 54 93-146 43-97 (210)
282 cd01424 MGS_CPS_II Methylglyox 30.9 3.7E+02 0.008 23.8 8.8 26 39-64 8-33 (110)
283 PRK14722 flhF flagellar biosyn 30.5 3.6E+02 0.0078 30.0 10.3 88 34-122 168-263 (374)
284 cd05212 NAD_bind_m-THF_DH_Cycl 30.5 1.7E+02 0.0037 27.9 6.8 54 31-91 26-83 (140)
285 COG0352 ThiE Thiamine monophos 30.3 5.8E+02 0.013 26.2 11.0 69 62-134 110-185 (211)
286 COG3836 HpcH 2,4-dihydroxyhept 30.1 4.3E+02 0.0094 27.9 10.0 97 48-147 7-109 (255)
287 TIGR03061 pip_yhgE_Nterm YhgE/ 30.0 1.4E+02 0.003 28.6 6.3 52 31-85 41-102 (164)
288 COG0800 Eda 2-keto-3-deoxy-6-p 29.9 5E+02 0.011 26.8 10.3 91 49-143 6-100 (211)
289 cd04949 GT1_gtfA_like This fam 29.9 4.9E+02 0.011 27.4 11.0 54 93-151 291-344 (372)
290 PF00977 His_biosynth: Histidi 29.8 2.4E+02 0.0051 28.8 8.2 70 64-134 147-219 (229)
291 KOG1562 Spermidine synthase [A 29.7 1.5E+02 0.0033 32.2 6.9 64 35-100 147-216 (337)
292 PRK07455 keto-hydroxyglutarate 29.7 4.8E+02 0.01 25.8 10.2 83 58-142 15-98 (187)
293 cd00429 RPE Ribulose-5-phospha 29.6 1.9E+02 0.0041 28.2 7.3 55 80-135 128-194 (211)
294 PF04309 G3P_antiterm: Glycero 29.5 70 0.0015 31.9 4.1 62 66-133 106-167 (175)
295 TIGR01302 IMP_dehydrog inosine 28.9 1.9E+02 0.004 32.8 7.9 54 79-133 236-291 (450)
296 PRK00811 spermidine synthase; 28.9 2.9E+02 0.0062 29.2 8.9 56 33-91 100-162 (283)
297 TIGR00696 wecB_tagA_cpsF bacte 28.8 3.5E+02 0.0075 26.8 8.9 76 32-111 47-130 (177)
298 cd03313 enolase Enolase: Enola 28.8 4.1E+02 0.0089 29.7 10.5 102 40-144 210-344 (408)
299 cd03804 GT1_wbaZ_like This fam 28.6 4.4E+02 0.0094 27.5 10.3 104 34-151 222-325 (351)
300 cd08185 Fe-ADH1 Iron-containin 28.6 2.9E+02 0.0063 30.3 9.2 63 34-101 26-102 (380)
301 PRK04128 1-(5-phosphoribosyl)- 28.4 5.9E+02 0.013 26.1 10.9 71 64-136 30-103 (228)
302 COG0626 MetC Cystathionine bet 28.0 3.9E+02 0.0084 30.1 10.0 99 32-133 101-205 (396)
303 cd03818 GT1_ExpC_like This fam 27.9 5.8E+02 0.013 27.4 11.4 75 66-151 291-365 (396)
304 TIGR02990 ectoine_eutA ectoine 27.8 4.2E+02 0.0092 27.5 9.7 75 34-110 121-210 (239)
305 cd04740 DHOD_1B_like Dihydroor 27.8 7.2E+02 0.016 26.0 12.6 38 95-132 220-257 (296)
306 smart00426 TEA TEA domain. 27.7 42 0.00092 28.5 1.9 18 224-241 5-22 (68)
307 KOG4175 Tryptophan synthase al 27.7 1.6E+02 0.0035 30.3 6.3 40 105-144 94-139 (268)
308 PF03102 NeuB: NeuB family; I 27.4 2.3E+02 0.005 29.5 7.7 94 45-143 57-160 (241)
309 TIGR01302 IMP_dehydrog inosine 27.2 5.3E+02 0.012 29.2 11.2 100 32-135 235-356 (450)
310 COG1643 HrpA HrpA-like helicas 27.1 5.8E+02 0.012 31.6 11.9 127 2-153 109-254 (845)
311 PRK06806 fructose-bisphosphate 26.9 4.6E+02 0.01 27.9 10.0 71 62-134 151-229 (281)
312 PRK08072 nicotinate-nucleotide 26.7 3.8E+02 0.0082 28.6 9.3 91 35-133 160-258 (277)
313 PRK01581 speE spermidine synth 26.5 2.8E+02 0.006 31.0 8.5 56 32-90 173-237 (374)
314 PRK06512 thiamine-phosphate py 26.5 4.8E+02 0.01 26.7 9.7 67 63-133 118-190 (221)
315 cd04726 KGPDC_HPS 3-Keto-L-gul 26.4 2.1E+02 0.0046 27.9 7.0 81 65-147 11-97 (202)
316 PRK03562 glutathione-regulated 26.4 3.2E+02 0.0069 32.3 9.5 92 33-133 423-516 (621)
317 cd03819 GT1_WavL_like This fam 26.3 7.2E+02 0.016 25.5 13.0 108 33-150 216-328 (355)
318 PF00448 SRP54: SRP54-type pro 26.2 3.5E+02 0.0075 27.0 8.5 115 33-149 29-163 (196)
319 TIGR01306 GMP_reduct_2 guanosi 26.1 8.9E+02 0.019 26.5 12.5 98 35-135 110-227 (321)
320 PRK05458 guanosine 5'-monophos 26.1 2.4E+02 0.0052 30.8 7.8 53 80-133 112-166 (326)
321 PRK13125 trpA tryptophan synth 26.1 2.5E+02 0.0054 28.9 7.7 54 96-149 64-125 (244)
322 TIGR02082 metH 5-methyltetrahy 25.9 5E+02 0.011 33.3 11.5 100 34-135 733-845 (1178)
323 PRK03522 rumB 23S rRNA methylu 25.9 3.4E+02 0.0073 29.0 8.9 78 33-116 195-276 (315)
324 TIGR00078 nadC nicotinate-nucl 25.8 4E+02 0.0086 28.1 9.2 91 35-134 150-249 (265)
325 CHL00101 trpG anthranilate syn 25.7 87 0.0019 30.9 4.1 48 36-85 2-49 (190)
326 cd00452 KDPG_aldolase KDPG and 25.7 4.6E+02 0.01 25.7 9.2 70 61-136 102-172 (190)
327 COG0159 TrpA Tryptophan syntha 25.6 2.2E+02 0.0048 30.2 7.2 57 95-151 82-145 (265)
328 PRK07765 para-aminobenzoate sy 25.5 1.1E+02 0.0023 31.1 4.8 79 34-113 1-83 (214)
329 PF01564 Spermine_synth: Sperm 25.5 78 0.0017 32.8 3.8 56 34-93 101-164 (246)
330 PRK09490 metH B12-dependent me 25.4 5.1E+02 0.011 33.5 11.4 100 34-135 752-864 (1229)
331 TIGR03704 PrmC_rel_meth putati 25.4 6.4E+02 0.014 26.1 10.6 52 33-87 110-161 (251)
332 cd06338 PBP1_ABC_ligand_bindin 25.4 7.8E+02 0.017 25.6 11.5 65 45-113 157-229 (345)
333 PLN02335 anthranilate synthase 25.3 88 0.0019 31.9 4.2 79 32-113 17-98 (222)
334 cd08194 Fe-ADH6 Iron-containin 25.2 4.8E+02 0.01 28.5 10.1 63 34-101 24-99 (375)
335 PF01993 MTD: methylene-5,6,7, 25.2 1.8E+02 0.0038 30.7 6.2 63 73-138 55-117 (276)
336 TIGR00417 speE spermidine synt 25.1 4.6E+02 0.01 27.3 9.6 54 34-90 97-156 (270)
337 PRK14949 DNA polymerase III su 25.0 1.9E+02 0.0041 36.0 7.3 72 79-152 119-193 (944)
338 PLN02823 spermine synthase 25.0 1.5E+02 0.0033 32.3 6.2 54 34-90 128-187 (336)
339 PRK05670 anthranilate synthase 25.0 98 0.0021 30.4 4.3 48 36-85 2-49 (189)
340 KOG3111 D-ribulose-5-phosphate 24.9 7.8E+02 0.017 25.4 10.7 106 47-152 102-219 (224)
341 PRK05637 anthranilate synthase 24.9 1.3E+02 0.0027 30.5 5.1 76 34-113 2-80 (208)
342 TIGR01361 DAHP_synth_Bsub phos 24.7 2.4E+02 0.0052 29.6 7.3 74 66-140 148-235 (260)
343 PF00290 Trp_syntA: Tryptophan 24.5 1.3E+02 0.0029 31.7 5.3 53 94-146 74-133 (259)
344 CHL00200 trpA tryptophan synth 24.5 7.4E+02 0.016 26.1 10.9 101 33-136 119-232 (263)
345 PRK04457 spermidine synthase; 24.4 4.1E+02 0.0088 27.7 9.0 52 33-87 90-144 (262)
346 TIGR01859 fruc_bis_ald_ fructo 24.4 5.1E+02 0.011 27.5 9.8 84 63-153 152-244 (282)
347 PRK12727 flagellar biosynthesi 24.4 6E+02 0.013 30.0 10.9 55 33-88 380-437 (559)
348 TIGR03449 mycothiol_MshA UDP-N 24.2 8.9E+02 0.019 25.8 12.2 107 34-151 253-367 (405)
349 cd08170 GlyDH Glycerol dehydro 24.2 3.8E+02 0.0082 28.9 9.0 75 34-113 23-108 (351)
350 PRK09860 putative alcohol dehy 24.1 4.6E+02 0.0099 28.9 9.7 63 34-101 32-107 (383)
351 TIGR00735 hisF imidazoleglycer 24.1 4.9E+02 0.011 26.8 9.5 72 64-136 30-104 (254)
352 PRK07764 DNA polymerase III su 24.0 2.3E+02 0.0051 34.8 8.0 72 79-152 120-194 (824)
353 cd08181 PPD-like 1,3-propanedi 23.9 5.6E+02 0.012 27.9 10.3 63 34-101 26-102 (357)
354 PRK00994 F420-dependent methyl 23.9 2.3E+02 0.005 29.9 6.8 80 56-138 30-118 (277)
355 TIGR00959 ffh signal recogniti 23.7 8E+02 0.017 27.8 11.6 55 32-88 127-191 (428)
356 cd02809 alpha_hydroxyacid_oxid 23.6 7.9E+02 0.017 26.0 11.1 70 63-135 180-256 (299)
357 PRK02615 thiamine-phosphate py 23.6 5.6E+02 0.012 28.2 10.1 70 61-134 245-321 (347)
358 cd03825 GT1_wcfI_like This fam 23.5 2.5E+02 0.0055 28.9 7.3 75 34-112 1-82 (365)
359 cd08176 LPO Lactadehyde:propan 23.4 5.1E+02 0.011 28.4 9.9 63 34-101 29-104 (377)
360 cd04951 GT1_WbdM_like This fam 23.3 6.8E+02 0.015 25.6 10.4 105 33-151 219-325 (360)
361 PRK13143 hisH imidazole glycer 23.0 1.7E+02 0.0036 29.2 5.5 44 34-85 1-44 (200)
362 TIGR03572 WbuZ glycosyl amidat 23.0 4.4E+02 0.0095 26.5 8.7 73 63-136 29-104 (232)
363 PRK01033 imidazole glycerol ph 22.8 4.6E+02 0.01 27.2 9.0 68 66-134 154-225 (258)
364 PF07279 DUF1442: Protein of u 22.8 3.9E+02 0.0084 27.7 8.1 84 21-111 58-146 (218)
365 PRK11359 cyclic-di-GMP phospho 22.7 6.3E+02 0.014 29.8 11.2 97 49-148 683-793 (799)
366 PRK08649 inosine 5-monophospha 22.6 1.1E+03 0.023 26.2 12.5 66 65-134 142-214 (368)
367 PRK05567 inosine 5'-monophosph 22.4 3.2E+02 0.007 31.2 8.4 64 67-133 230-295 (486)
368 PRK03708 ppnK inorganic polyph 22.2 5.8E+02 0.012 27.1 9.7 101 34-154 1-114 (277)
369 COG1411 Uncharacterized protei 22.2 3.2E+02 0.0068 28.2 7.2 71 65-136 138-211 (229)
370 TIGR00479 rumA 23S rRNA (uraci 22.1 9.9E+02 0.021 26.5 12.0 79 34-114 315-396 (431)
371 PLN02589 caffeoyl-CoA O-methyl 22.1 3.8E+02 0.0083 28.0 8.2 56 33-88 104-165 (247)
372 PRK01231 ppnK inorganic polyph 22.0 9E+02 0.02 25.9 11.2 101 34-153 5-119 (295)
373 cd01572 QPRTase Quinolinate ph 22.0 6.4E+02 0.014 26.6 9.9 90 36-134 155-253 (268)
374 PLN02898 HMP-P kinase/thiamin- 21.8 5.2E+02 0.011 29.5 9.9 66 61-130 395-467 (502)
375 PRK05286 dihydroorotate dehydr 21.6 6.7E+02 0.015 27.2 10.3 57 95-151 276-341 (344)
376 COG4262 Predicted spermidine s 21.6 1.9E+02 0.004 32.6 5.8 62 30-93 310-379 (508)
377 TIGR01306 GMP_reduct_2 guanosi 21.4 3E+02 0.0066 30.0 7.5 56 80-135 109-165 (321)
378 PLN02274 inosine-5'-monophosph 21.4 3.8E+02 0.0082 31.0 8.6 64 67-134 250-316 (505)
379 cd03820 GT1_amsD_like This fam 21.4 8E+02 0.017 24.2 12.4 108 33-151 209-318 (348)
380 PRK05031 tRNA (uracil-5-)-meth 21.3 1.1E+03 0.024 25.8 12.1 77 35-116 230-322 (362)
381 PRK02290 3-dehydroquinate synt 21.1 4.6E+02 0.01 29.0 8.7 69 80-150 89-159 (344)
382 cd08551 Fe-ADH iron-containing 21.1 5.2E+02 0.011 28.1 9.4 63 34-101 24-99 (370)
383 PRK14075 pnk inorganic polypho 21.1 8.7E+02 0.019 25.3 10.6 93 34-153 1-95 (256)
384 TIGR00737 nifR3_yhdG putative 20.8 9.5E+02 0.021 25.6 11.1 94 39-134 113-221 (319)
385 PF13487 HD_5: HD domain; PDB: 20.7 55 0.0012 26.6 1.3 17 316-332 1-18 (64)
386 PRK00366 ispG 4-hydroxy-3-meth 20.7 7.3E+02 0.016 27.6 10.1 69 80-151 56-124 (360)
387 cd04724 Tryptophan_synthase_al 20.5 6.1E+02 0.013 26.1 9.3 98 36-136 108-216 (242)
388 PRK01033 imidazole glycerol ph 20.4 5.5E+02 0.012 26.6 9.0 72 63-135 29-103 (258)
389 PRK04128 1-(5-phosphoribosyl)- 20.2 4.9E+02 0.011 26.7 8.4 65 65-134 144-210 (228)
390 cd01948 EAL EAL domain. This d 20.2 4.1E+02 0.0089 25.9 7.7 88 49-139 137-238 (240)
391 PF11895 DUF3415: Domain of un 20.2 55 0.0012 28.6 1.2 23 431-453 36-58 (80)
392 PF04131 NanE: Putative N-acet 20.1 2.7E+02 0.0058 28.3 6.2 72 57-135 45-118 (192)
393 PRK10415 tRNA-dihydrouridine s 20.1 8E+02 0.017 26.4 10.4 95 38-134 114-223 (321)
394 cd05013 SIS_RpiR RpiR-like pro 20.1 6E+02 0.013 22.3 10.7 83 35-119 15-100 (139)
395 PRK11031 guanosine pentaphosph 20.1 47 0.001 38.0 1.1 41 267-307 326-367 (496)
396 cd03785 GT1_MurG MurG is an N- 20.0 9.8E+02 0.021 24.8 12.8 65 80-151 253-323 (350)
No 1
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-34 Score=302.35 Aligned_cols=263 Identities=26% Similarity=0.386 Sum_probs=204.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cC---CC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EM---DL 107 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~---~i 107 (632)
..++||+|||++..+..++.+|+..+|.|..|.++++|++++.+.. +|+||+|++||+|||++++++|+. .+ .+
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~i 90 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRI 90 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHHHHHHHHhcCCccccc
Confidence 4689999999999999999999999999999999999999988765 999999999999999999999975 43 68
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccccccCCccccccCCCChhhHHHHHHhhc
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNE 187 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~~~~~~le~~~~~~lt~~Eie~l~~l~e 187 (632)
|||++|+..+.+...+++..||+|||.||+++.+|...+...+..+....... ....|++
T Consensus 91 p~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k~~~~~~~----------------~~~~~le---- 150 (360)
T COG3437 91 PVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLKRNEDFLL----------------DQNLYLE---- 150 (360)
T ss_pred ceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHH----
Confidence 99999999999999999999999999999999999998875554332211110 1111111
Q ss_pred CCchhhhhhhhhccccccccccccCCCCCCCCCCcccchHHHHHHHHHHHHHhccc-cccHHHHHHHhcCCCcChH-HHH
Q 006774 188 GTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGID-KAVPKRILELMNVPGLTRE-NVA 265 (632)
Q Consensus 188 G~~~~~k~~~k~is~ke~~d~~~~~~~~s~~kK~rv~wt~eLh~~Fl~av~~Lgid-kA~pK~ILelM~v~gltre-~ta 265 (632)
+.|+.++..+ +.+.+.. ..+.++|..++ +.|+ +|+
T Consensus 151 --------------------------------------~~e~~~~~~e-~~~~~~~~~~t~~~L~~~~----E~R~~etg 187 (360)
T COG3437 151 --------------------------------------LQELRRRTEE-LAQIEDNLDETLEELAALL----EVRDYETG 187 (360)
T ss_pred --------------------------------------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----Hhcccchh
Confidence 0011111000 1111000 02333444333 5555 799
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCccee--eeeccCCCCChHHHHHHHH-hhcCCCCCCccccc
Q 006774 266 SHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI--QALAASGQIPPQTLAALHA-ELLGRPTGNLVTAV 342 (632)
Q Consensus 266 SHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i--~iL~KpGkL~~ee~~imk~-~~~G~~~~~~~~~~ 342 (632)
.|+.|+..|++.+ |.++||++++++.+..|+||||||||+| +||+|||+||+|||++||. ..+|+.. +....
T Consensus 188 ~H~~Rv~~~~~~l---Ae~lgLse~~v~~i~~AapLHDIGKvaiPD~ILlKpg~Lt~ee~~imk~H~~~G~~i--l~~s~ 262 (360)
T COG3437 188 DHLERVAQYSELL---AELLGLSEEEVDLIKKAAPLHDIGKVAIPDSILLKPGKLTSEEFEIMKGHPILGAEI--LKSSE 262 (360)
T ss_pred hHHHHHHHHHHHH---HHHhCCCHHHHHHHHhccchhhcccccCChHHhcCCCCCCHHHHHHHhcchHHHHHH--HHHHH
Confidence 9999999999999 9999999999999999999999999999 9999999999999999999 5667521 11111
Q ss_pred CchHHHHhhhCCCcccCC---CCCCCCC
Q 006774 343 DQPALLQATLQGPKCIPA---DHGFGVW 367 (632)
Q Consensus 343 d~~~~~~~~~~~~~~~~~---~~~~~~~ 367 (632)
+ +++...+-...||+ |.|||-.
T Consensus 263 --~-~mq~a~eIa~~HHErwDGsGYPdg 287 (360)
T COG3437 263 --R-LMQVAAEIARHHHERWDGSGYPDG 287 (360)
T ss_pred --H-HHHHHHHHHHHhhhccCCCCCCCC
Confidence 1 77777777888888 9999987
No 2
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.81 E-value=2.6e-19 Score=181.65 Aligned_cols=119 Identities=30% Similarity=0.506 Sum_probs=111.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~--~~~iPIII 111 (632)
++|||||||+.+++.+...|+..||.|..+.++.+|++.+... ||+||+|++||++||++++++||. ...+||||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC---CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999999999999999999999998753 999999999999999999999984 46789999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~ 155 (632)
+|+.++......++++|||||+.|||++.||.+.++.++|+...
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 99999999999999999999999999999999999999987643
No 3
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.79 E-value=9.3e-19 Score=170.34 Aligned_cols=168 Identities=23% Similarity=0.311 Sum_probs=139.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr-~~~~iPIII 111 (632)
..-|.|||||..+|+.+..+|+..||.+.++.++.+.|..... ..|-++|+|+.||+++|+++.++|. ....+|||+
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~--~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIf 81 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL--DRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIF 81 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC--CCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEEE
Confidence 4568999999999999999999999999999999999987533 3489999999999999999999996 467899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccccccCCccccccCCCChhhHHHHHHhhcCCch
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEG 191 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~~~~~~le~~~~~~lt~~Eie~l~~l~eG~~~ 191 (632)
+|++.|.....+|++.||.|||.||++.+.|..+++++++.............. .......++.+|.+++..+..|..+
T Consensus 82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~~~~-~~~~l~tLT~RERqVl~~vV~G~~N 160 (202)
T COG4566 82 LTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEADRQAA-IRARLATLTPRERQVLDLVVRGLMN 160 (202)
T ss_pred EeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHhcCHHHHHHHHHHHcCccc
Confidence 999999999999999999999999999999999999998764332222111000 1112457899999999999999888
Q ss_pred hhhhhhhhcccc
Q 006774 192 TFKAQRKRISAK 203 (632)
Q Consensus 192 ~~k~~~k~is~k 203 (632)
+.++....++.+
T Consensus 161 KqIA~dLgiS~r 172 (202)
T COG4566 161 KQIAFDLGISER 172 (202)
T ss_pred HHHHHHcCCchh
Confidence 888886666643
No 4
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.78 E-value=9.5e-18 Score=166.10 Aligned_cols=119 Identities=29% Similarity=0.469 Sum_probs=109.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~-gy~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr-~~~~iPII 110 (632)
++|||||||+.+.+.-+.+++.. ||. |.+|.+.++|..++++.. |||||+|+.||+.+|++|+.+++ ....+-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCccHHHHHHHHhcCCCCCEE
Confidence 58999999999999999999976 665 569999999999999876 89999999999999999999997 45678899
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
++|+-.+.+.+.+|+++|+.|||.|||..+.|..++.+..+++.
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~ 122 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRH 122 (224)
T ss_pred EEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877653
No 5
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.77 E-value=1.5e-18 Score=190.36 Aligned_cols=118 Identities=28% Similarity=0.490 Sum_probs=109.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC--CCeE-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRC--LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPV 109 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~--gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr-~~~~iPI 109 (632)
.+||||||++.+|++|+.++.+. |+++ .+|.+|.+|++.+++.. |||||+|+.||+|||+++++.++ ..+++.+
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~--pDiviTDI~MP~mdGLdLI~~ike~~p~~~~ 79 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQ--PDIVITDINMPGMDGLDLIKAIKEQSPDTEF 79 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhCCCceE
Confidence 68999999999999999999875 6665 59999999999999876 99999999999999999999997 4689999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|++|++++.+++.+|+++|+.|||+||++.++|.+++.++..+.
T Consensus 80 IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 80 IILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred EEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988654
No 6
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.77 E-value=8.3e-18 Score=168.40 Aligned_cols=170 Identities=30% Similarity=0.340 Sum_probs=141.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CeE-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCL-YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~g-y~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr-~~~~iPII 110 (632)
++|+|+||++.++..++.+|...+ ++| ..+.++.++++.++... ||+||+|+.||+++|+++++.|+ ..++++|+
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~--pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vv 78 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELK--PDVVLLDLSMPGMDGLEALKQLRARGPDIKVV 78 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcC--CCEEEEcCCCCCCChHHHHHHHHHHCCCCcEE
Confidence 479999999999999999998765 765 47888999999977654 99999999999999999999997 56889999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccccc-----cCCc-ccccc-CCCChhhHHHHH
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN-----SGSL-EETDH-HKRGSDEIEYAS 183 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~~~-----~~~l-e~~~~-~~lt~~Eie~l~ 183 (632)
++|.+.+...+.+++++||++|+.|..+.++|..+++.+..+.......... .... ..... ..++.+|.+++.
T Consensus 79 vlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVL~ 158 (211)
T COG2197 79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPSSSAEAPLAELLTPRELEVLR 158 (211)
T ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeCHHHHHHHHhhcccccccccccCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999998766433321110 0000 11111 368999999999
Q ss_pred HhhcCCchhhhhhhhhcccccc
Q 006774 184 SVNEGTEGTFKAQRKRISAKEE 205 (632)
Q Consensus 184 ~l~eG~~~~~k~~~k~is~ke~ 205 (632)
.+.+|..+..++.+..++.++.
T Consensus 159 lla~G~snkeIA~~L~iS~~TV 180 (211)
T COG2197 159 LLAEGLSNKEIAEELNLSEKTV 180 (211)
T ss_pred HHHCCCCHHHHHHHHCCCHhHH
Confidence 9999999999999888886644
No 7
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.73 E-value=4.4e-17 Score=178.99 Aligned_cols=120 Identities=41% Similarity=0.606 Sum_probs=112.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr-~~~~iPIII 111 (632)
..+|||||||+.++..+..+|+..||.|.++.++.+|++.+... .||+||+|+.||++||++++++++ ..+++|||+
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~ 81 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIV 81 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEE
Confidence 34799999999999999999999999999999999999999876 499999999999999999999996 458999999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
+|++.+.+.+.+|++.||.|||.|||+.++|..++.+++..+.
T Consensus 82 ~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 82 MTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred EeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999987543
No 8
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.72 E-value=3.2e-16 Score=184.75 Aligned_cols=117 Identities=28% Similarity=0.420 Sum_probs=108.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-----CCC
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-----MDL 107 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~-----~~i 107 (632)
+++||||||++..+..++.+|...++.+..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.. +.+
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~ 767 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHR--FDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDC 767 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCC
Confidence 468999999999999999999999999999999999999987654 9999999999999999999999742 568
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
|||++|+..+.+...++++.|+++|+.||++.++|..++.++++
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887754
No 9
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.71 E-value=2.8e-16 Score=137.81 Aligned_cols=110 Identities=37% Similarity=0.639 Sum_probs=103.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006774 36 VLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (632)
Q Consensus 36 VLIVDDd~~ir~~L~~lL~~~gy-~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIILS 113 (632)
||||||++..++.++..|+..++ .+..+.++.+|++.++... ||+||+|+.|++++|+++++.|+. .+.+|+|++|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeeccccccccccccccccccccEEEec
Confidence 79999999999999999999999 9999999999999998765 999999999999999999999974 4689999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHH
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~ 147 (632)
...+.....+++++|+++||.||++.++|.++++
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9999999999999999999999999999998774
No 10
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.67 E-value=9.2e-16 Score=181.33 Aligned_cols=151 Identities=25% Similarity=0.324 Sum_probs=132.3
Q ss_pred ChhHHHHHHHcCC-------CCCCCcccccccCCCC------------CCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEE
Q 006774 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQ------------FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT 61 (632)
Q Consensus 1 Lai~~~lv~~~GG-------~G~gs~~~~~~~~p~~------------~p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~ 61 (632)
|+|++++++.||| .|.|++|++.+|+... ...+++||||||++..+..++.+|...++.|.
T Consensus 630 L~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~ 709 (914)
T PRK11466 630 LTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGLRLLLIEDNPLTQRITAEMLNTSGAQVV 709 (914)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEccccccccccccccccccCCcceEEEeCCHHHHHHHHHHHHhcCCceE
Confidence 6899999999999 4678888777764311 01357999999999999999999999999999
Q ss_pred EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHH
Q 006774 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREE 140 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~e 140 (632)
.+.++.+|++.+... .+||+||+|+.||++||+++++.|+. .+.+|||++|+........++++.|+++||.||++.+
T Consensus 710 ~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~ 788 (914)
T PRK11466 710 AVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPRE 788 (914)
T ss_pred EeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHH
Confidence 999999999988643 25899999999999999999999974 5789999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 006774 141 ELKNIWQHVVRK 152 (632)
Q Consensus 141 eL~~~L~~vlr~ 152 (632)
+|..++.++++.
T Consensus 789 ~L~~~i~~~~~~ 800 (914)
T PRK11466 789 VLGQLLAHYLQL 800 (914)
T ss_pred HHHHHHHHHhhh
Confidence 999999988764
No 11
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.66 E-value=1.6e-15 Score=176.86 Aligned_cols=149 Identities=23% Similarity=0.357 Sum_probs=128.1
Q ss_pred ChhHHHHHHHcCC-------CCCCCcccccccCCCCC-------------CCCcEEEEEeCCHHHHHHHHHHHHhCCCeE
Q 006774 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQF-------------PAGLRVLVVDDDITCLRILEQMLRRCLYNV 60 (632)
Q Consensus 1 Lai~~~lv~~~GG-------~G~gs~~~~~~~~p~~~-------------p~glrVLIVDDd~~ir~~L~~lL~~~gy~V 60 (632)
|+|++++|+.||| .|.|++|++.+|.+... ..+++||||||++..+..++.+|+..++.+
T Consensus 473 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v 552 (779)
T PRK11091 473 LAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVEDAFDEDDMPLPALNILLVEDIELNVIVARSVLEKLGNSV 552 (779)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCeEEEEEEEeccccccccccccccccccccccceEEEcCCHHHHHHHHHHHHHcCCEE
Confidence 6899999999999 47888888877664221 135799999999999999999999999999
Q ss_pred EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CC-CcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MD-LPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~---~~-iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
..+.++.+|++.+... .||+||+|+.||+++|+++++.|+.. +. .|||++|+.... ...++++.|+++||.||
T Consensus 553 ~~a~~~~eal~~~~~~--~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP 629 (779)
T PRK11091 553 DVAMTGKEALEMFDPD--EYDLVLLDIQLPDMTGLDIARELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKP 629 (779)
T ss_pred EEECCHHHHHHHhhcC--CCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECC
Confidence 9999999999998754 49999999999999999999999753 34 488889887654 45788999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 006774 137 IREEELKNIWQHVVRK 152 (632)
Q Consensus 137 ~~~eeL~~~L~~vlr~ 152 (632)
++.++|..++++++..
T Consensus 630 ~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 630 LSVPALTAMIKKFWDT 645 (779)
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999888753
No 12
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.65 E-value=2e-15 Score=179.28 Aligned_cols=150 Identities=27% Similarity=0.349 Sum_probs=131.9
Q ss_pred ChhHHHHHHHcCC-------CCCCCcccccccCCCCC------------CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEE
Q 006774 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQF------------PAGLRVLVVDDDITCLRILEQMLRRCLYNVT 61 (632)
Q Consensus 1 Lai~~~lv~~~GG-------~G~gs~~~~~~~~p~~~------------p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~ 61 (632)
|+|++++++.||| .|.|++|++.+|+.... ..+.+||||||++..+..++.+|+..||.|.
T Consensus 651 L~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~~~~~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~ 730 (968)
T TIGR02956 651 LAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAEDSATLTVIDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVT 730 (968)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCccccccccccccccccceEEEcCcHHHHHHHHHHHHHcCCEEE
Confidence 6899999999999 47788888777654211 1235899999999999999999999999999
Q ss_pred EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CC---CcEEEEecCCCHHHHHHHHhcCCcEEEeCCC
Q 006774 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MD---LPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~-~~---iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~ 137 (632)
.+.++.+|++.+... .||+||+|+.||+++|+++++.|+.. +. +|||++|+....+...++++.|+++|+.||+
T Consensus 731 ~~~~~~~a~~~l~~~--~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~ 808 (968)
T TIGR02956 731 LAESGQSALECFHQH--AFDLALLDINLPDGDGVTLLQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPV 808 (968)
T ss_pred EECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 999999999999764 49999999999999999999999753 22 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 006774 138 REEELKNIWQHVVRK 152 (632)
Q Consensus 138 ~~eeL~~~L~~vlr~ 152 (632)
+.++|...+.+++..
T Consensus 809 ~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 809 VEEQLTAMIAVILAG 823 (968)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999888753
No 13
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.65 E-value=4.4e-15 Score=146.75 Aligned_cols=171 Identities=17% Similarity=0.169 Sum_probs=137.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-e-EEEEcCHHHHHHHHHHcCCCceEEEEecCCCC---CCHHHHHHHHhc-cCC
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLY-N-VTTCSQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGL-EMD 106 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy-~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd---mdGleLL~~Lr~-~~~ 106 (632)
+++||||||++..+..++.+|+..++ . +..+.++.++++.+.... ||+||+|+.||+ .+|++++++|+. .+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLD--AHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCC--CCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 47999999999999999999987654 3 668899999999887654 999999999999 599999999964 578
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccccc---cCCccccccCCCChhhHHHHH
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN---SGSLEETDHHKRGSDEIEYAS 183 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~~~---~~~le~~~~~~lt~~Eie~l~ 183 (632)
+|||++|...+.....++++.|+++|+.||.+.++|..+++.+..+.......... ...........++.+|.+++.
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~evl~ 160 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR 160 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCeecCHHHHHHHHHhccCCCccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999987654322111000 000000112358999999999
Q ss_pred HhhcCCchhhhhhhhhcccccc
Q 006774 184 SVNEGTEGTFKAQRKRISAKEE 205 (632)
Q Consensus 184 ~l~eG~~~~~k~~~k~is~ke~ 205 (632)
.+.+|.....++....++.++.
T Consensus 161 ~~~~G~s~~eIA~~l~iS~~TV 182 (216)
T PRK10840 161 LFAEGFLVTEIAKKLNRSIKTI 182 (216)
T ss_pred HHHCCCCHHHHHHHHCCCHHHH
Confidence 9999999999998888776543
No 14
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.64 E-value=4.8e-15 Score=176.94 Aligned_cols=119 Identities=30% Similarity=0.482 Sum_probs=110.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIII 111 (632)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+|+|+++++.|+. .+.+|||+
T Consensus 801 ~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~--~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII~ 878 (924)
T PRK10841 801 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVIG 878 (924)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999999999999999999999999999998754 999999999999999999999975 46799999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+|+....+...++++.|+++||.||++.++|..++.++.+..
T Consensus 879 lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 879 VTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998876543
No 15
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.63 E-value=8.8e-15 Score=146.22 Aligned_cols=121 Identities=25% Similarity=0.379 Sum_probs=109.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCC
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDL 107 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~-gy~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~i 107 (632)
|+.++||||||++.++..++..|+.. ++. +..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+..
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~--pdlvllD~~mp~~~gle~~~~l~~~~~~~ 79 (225)
T PRK10046 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK--PGLILLDNYLPDGRGINLLHELVQAHYPG 79 (225)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCC
Confidence 55689999999999999999999864 674 678999999999997654 999999999999999999999975 4678
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+||++|+..+.....++++.||++|+.||++.++|..+++++.+.+
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 125 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887654
No 16
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.62 E-value=5.6e-15 Score=179.77 Aligned_cols=149 Identities=24% Similarity=0.446 Sum_probs=131.0
Q ss_pred ChhHHHHHHHcCC-------CCCCCcccccccCCC---------------CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC
Q 006774 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPD---------------QFPAGLRVLVVDDDITCLRILEQMLRRCLY 58 (632)
Q Consensus 1 Lai~~~lv~~~GG-------~G~gs~~~~~~~~p~---------------~~p~glrVLIVDDd~~ir~~L~~lL~~~gy 58 (632)
|+|++++++.||| .|.|++|+..+|+.. ..+..++||||||++..+..++.+|+..++
T Consensus 904 L~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~ 983 (1197)
T PRK09959 904 LMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGY 983 (1197)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcccccccccccccccCceEEEcCCCHHHHHHHHHHHHHcCC
Confidence 6899999999999 466777777665421 112357899999999999999999999999
Q ss_pred eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCC
Q 006774 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (632)
Q Consensus 59 ~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~ 137 (632)
.+..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|||++|+..+.....++++.|+++||.||+
T Consensus 984 ~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~i~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~ 1061 (1197)
T PRK09959 984 DVDEATDGVQALHKVSMQ--HYDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPL 1061 (1197)
T ss_pred EEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 999999999999998765 4999999999999999999999974 4679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 006774 138 REEELKNIWQHVVR 151 (632)
Q Consensus 138 ~~eeL~~~L~~vlr 151 (632)
+.++|...++++.+
T Consensus 1062 ~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1062 TLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999887654
No 17
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.62 E-value=2.3e-14 Score=128.60 Aligned_cols=119 Identities=38% Similarity=0.585 Sum_probs=103.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHH-HHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAA-VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPV 109 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~-eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~-~~iPI 109 (632)
...+||+|||++..+..++.+|...++.+..+.++. +|++.++... .||+|++|+.||++||++++++++.. ..+|+
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pv 82 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRARGPNIPV 82 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCE
Confidence 457999999999999999999999999999999995 9999998752 39999999999999999999999865 67888
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHH-HHHHHHHHHH
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEE-LKNIWQHVVR 151 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~ee-L~~~L~~vlr 151 (632)
|++|++........+++.|+++|+.||+...+ |...+.+.+.
T Consensus 83 v~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 83 ILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 88999988877777899999999999977666 6777765543
No 18
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.61 E-value=9.4e-15 Score=172.17 Aligned_cols=118 Identities=31% Similarity=0.505 Sum_probs=109.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCcE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~~iPI 109 (632)
.++||||||++..+..++.+|...++.|..+.++.+|++.+.... ||+||+|+.||++||+++++.|+. .+.+||
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pi 744 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRP--FDLILMDIQMPGMDGIRACELIRQLPHNQNTPI 744 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCE
Confidence 468999999999999999999999999999999999999997654 999999999999999999999974 457999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
|++|+..+.+...++++.|+++|+.||++.++|...+.+++..
T Consensus 745 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 745 IAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999998887654
No 19
>PRK09483 response regulator; Provisional
Probab=99.61 E-value=3.5e-14 Score=137.86 Aligned_cols=168 Identities=20% Similarity=0.239 Sum_probs=134.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
++|||+||++..+..++.+|+.. ++.+. .+.++.+++..+.... ||+||+|+.+|+++|+++++.++. .+.+|+|
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii 79 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNA--VDVVLMDMNMPGIGGLEATRKILRYTPDVKII 79 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEE
Confidence 68999999999999999999874 77775 7899999999887654 999999999999999999999964 5789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcccccccc------ccCCccccccCCCChhhHHHHHH
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE------NSGSLEETDHHKRGSDEIEYASS 184 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~~------~~~~le~~~~~~lt~~Eie~l~~ 184 (632)
+++...+.....+++..|+++|+.||++.++|..+++.+.++......... ............++.+|.+++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~~ 159 (217)
T PRK09483 80 MLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQIEPATENPFASLSERELQIMLM 159 (217)
T ss_pred EEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHhhcccCCCccccccCHHHHHHHHH
Confidence 999999998899999999999999999999999999998875433221110 00001111234589999999999
Q ss_pred hhcCCchhhhhhhhhcccc
Q 006774 185 VNEGTEGTFKAQRKRISAK 203 (632)
Q Consensus 185 l~eG~~~~~k~~~k~is~k 203 (632)
+..|.....++....++.+
T Consensus 160 ~~~G~~~~~Ia~~l~is~~ 178 (217)
T PRK09483 160 ITKGQKVNEISEQLNLSPK 178 (217)
T ss_pred HHCCCCHHHHHHHhCCCHH
Confidence 9999877777766555543
No 20
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.59 E-value=3.9e-14 Score=138.59 Aligned_cols=118 Identities=27% Similarity=0.366 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILS 113 (632)
.+||||||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|+|++|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 5899999999999999999999999999999999999887654 49999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+..+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999887653
No 21
>PRK11173 two-component response regulator; Provisional
Probab=99.58 E-value=5.1e-14 Score=139.79 Aligned_cols=118 Identities=20% Similarity=0.408 Sum_probs=109.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILS 113 (632)
.+||||||++..+..+...|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|+|+++
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pii~lt 81 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN--DINLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 5899999999999999999999999999999999999988765 49999999999999999999999876789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+..+......+++.||++|+.||++.++|...++.++++.
T Consensus 82 ~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999888899999999999999999999999999888764
No 22
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.58 E-value=9.9e-14 Score=134.36 Aligned_cols=118 Identities=31% Similarity=0.506 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIIL 112 (632)
++||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGH--YSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999999999999999999999999887654 999999999999999999999974 467999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|+..+.....++++.|+++|+.||++.++|...++.++++.
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999887654
No 23
>PLN03029 type-a response regulator protein; Provisional
Probab=99.58 E-value=4.2e-14 Score=142.42 Aligned_cols=122 Identities=28% Similarity=0.560 Sum_probs=108.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcC------------------CCceEEEEecCCCCCC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERK------------------GCFDVVLSDVHMPDMD 93 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~------------------~~pDLVILDi~MPdmd 93 (632)
..++||||||++..+..+..+|...+|.|.++.++.+|++.+.... ..+|+||+|+.||+++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 3589999999999999999999999999999999999999886432 1367999999999999
Q ss_pred HHHHHHHHhcc---CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 94 GFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 94 GleLL~~Lr~~---~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|+++++.|+.. ..+|||++|+........++++.|+++||.||++..+|..++.++++.+
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 99999999753 4789999999999999999999999999999999999988888777644
No 24
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.58 E-value=8.7e-14 Score=134.76 Aligned_cols=118 Identities=25% Similarity=0.422 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIIL 112 (632)
|+||||||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA--PYDAVILDLTLPGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999999998899999999999999988654 4999999999999999999999975 468999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|+..+.+...++++.||++|+.||++.++|..+++.++++.
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 99999998999999999999999999999999999887753
No 25
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.58 E-value=1e-13 Score=133.34 Aligned_cols=162 Identities=15% Similarity=0.201 Sum_probs=128.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIII 111 (632)
|+|||+||++..+..++..|+..++.+. .+.++.++++.+... .||+||+|+.+|+++|+++++.++. .+..|+|+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 5899999999999999999998899887 699999999988765 4999999999999999999999974 46789999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcccccccc-ccCCc--cccccCCCChhhHHHHHHhhcC
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE-NSGSL--EETDHHKRGSDEIEYASSVNEG 188 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~~-~~~~l--e~~~~~~lt~~Eie~l~~l~eG 188 (632)
+++..+.....++++.|+++|+.||++.++|..+++.++++......... ..... .......++.+|.+++..+..|
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~E~~vl~~l~~g 158 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDG 158 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCcccCHHHHHHHHhccCCCcccccCCHHHHHHHHHHHcC
Confidence 99999988999999999999999999999999999998765332111100 00000 1111234788999999999888
Q ss_pred Cchhhhhhh
Q 006774 189 TEGTFKAQR 197 (632)
Q Consensus 189 ~~~~~k~~~ 197 (632)
.....++..
T Consensus 159 ~~~~~I~~~ 167 (204)
T PRK09958 159 KDNNDIAEK 167 (204)
T ss_pred CCHHHHHHH
Confidence 755444443
No 26
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.58 E-value=3.9e-14 Score=154.89 Aligned_cols=122 Identities=34% Similarity=0.502 Sum_probs=113.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~~iP 108 (632)
...+||||||+...+..++.+|...||.+..+.++.+|+..+.+. +||+||+|+.||++||+++++++|. ...+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~--~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL--PPDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcC--CCcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 467999999999999999999999999999999999999999876 4999999999999999999999974 35799
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~ 155 (632)
||++++.++.....+|++.|++||+.||+...+|...+++.+++.+.
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999888876654
No 27
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.57 E-value=7e-14 Score=136.86 Aligned_cols=118 Identities=28% Similarity=0.412 Sum_probs=109.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIIL 112 (632)
|+||+|||++..+..+...|+..++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHL--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999999887654 999999999999999999999975 468999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
++..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999887653
No 28
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.57 E-value=9.2e-14 Score=135.56 Aligned_cols=118 Identities=22% Similarity=0.381 Sum_probs=109.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILS 113 (632)
++||+|||++..+..+...|...++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++..+.+|+|+++
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l~ 80 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQ--HVDLILLDINLPGEDGLMLTRELRSRSTVGIILVT 80 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999999999999999988764 49999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+..+.....++++.||+||+.||++.++|...+..++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 81 GRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred CCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999988999999999999999999999999999888763
No 29
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.56 E-value=1.6e-13 Score=133.56 Aligned_cols=118 Identities=25% Similarity=0.469 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILS 113 (632)
|+||||||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|+|+++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD--DYALIILDIMLPGMDGWQILQTLRTAKQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 5899999999999999999998899999999999999988654 49999999999999999999999876789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+..+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999887653
No 30
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.56 E-value=1.1e-13 Score=135.75 Aligned_cols=117 Identities=21% Similarity=0.467 Sum_probs=108.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIIL 112 (632)
|+||||||++..+..+...|...++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999999999998899999999999999988654 4999999999999999999999975 468999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
|+..+.+...++++.||++|+.||++.++|...++.++++
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988764
No 31
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.56 E-value=7.7e-14 Score=133.35 Aligned_cols=159 Identities=21% Similarity=0.250 Sum_probs=125.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~-gy~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIII 111 (632)
++||||||++..+..++..|... ++. +..+.++.++++.+... .||+||+|+.|++++|+++++.++ +.+|||+
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~--~~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGR--GVQVCICDISMPDISGLELLSQLP--KGMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHc--cCCCEEE
Confidence 58999999999999999999754 554 56889999999988754 499999999999999999999986 3689999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccccccCCccccccCCCChhhHHHHHHhhcCCch
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEG 191 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~~~~~~le~~~~~~lt~~Eie~l~~l~eG~~~ 191 (632)
++...+.+....+++.|+++|+.||++.++|..+++.++++.......... .+.......++.+|.+.+..+..|...
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~Lt~~E~~il~~l~~g~~~ 155 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAI--KLASGRQDPLTKRERQVAEKLAQGMAV 155 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHH--HHHhccccCCCHHHHHHHHHHHCCCCH
Confidence 999999999999999999999999999999999999988753221111100 000111235788899999999888655
Q ss_pred hhhhhhh
Q 006774 192 TFKAQRK 198 (632)
Q Consensus 192 ~~k~~~k 198 (632)
..++...
T Consensus 156 ~~Ia~~l 162 (196)
T PRK10360 156 KEIAAEL 162 (196)
T ss_pred HHHHHHh
Confidence 5555433
No 32
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.56 E-value=2.7e-13 Score=136.53 Aligned_cols=118 Identities=23% Similarity=0.367 Sum_probs=103.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~-gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
++||||||++.++..++.+|... ++.+ ..+.++.++++.+......||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEE
Confidence 68999999999999999999864 5654 4788999999988642235999999999999999999999974 5689999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
++|+..+.....++++.|+++|+.||++.++|..++.++..
T Consensus 82 ~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~ 122 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 (239)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987543
No 33
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.54 E-value=2.2e-13 Score=132.03 Aligned_cols=119 Identities=29% Similarity=0.501 Sum_probs=108.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~---~~iPI 109 (632)
..+||||||++..+..+...|+..++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERG--PDLILLDWMLPGTSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcC--CCEEEEECCCCCCcHHHHHHHHHccccCCCCCE
Confidence 368999999999999999999988999999999999999887654 9999999999999999999999743 57899
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|++++..+.....++++.|+++|+.||++.++|...++.++++.
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 80 IMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999887653
No 34
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.54 E-value=2.1e-13 Score=135.39 Aligned_cols=118 Identities=19% Similarity=0.335 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILS 113 (632)
.+||||||++..+..+...|+..++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++.....|+|+++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~ 79 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQ--PDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLT 79 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 48999999999999999999999999999999999999887654 9999999999999999999999876678999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+..+.....++++.|++||+.||++..+|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9888888889999999999999999999999999887754
No 35
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.54 E-value=2.4e-13 Score=133.64 Aligned_cols=117 Identities=29% Similarity=0.492 Sum_probs=107.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~---~~iPII 110 (632)
.+||||||++..+..+...|+..++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 6899999999999999999998899999999999999988754 49999999999999999999999753 578999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
++++..+.....++++.||++|+.||++.++|...++.++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988765
No 36
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.53 E-value=2.7e-14 Score=147.02 Aligned_cols=115 Identities=30% Similarity=0.512 Sum_probs=104.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIIL 112 (632)
++|+|||||..+...|..+|.+.+..+.+|....+|++.+...+ |||||+|+.||+|+|+|++++++. .+.+|||++
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~k--pDLifldI~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFK--PDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcC--CCEEEEEeecCCccHHHHHHHHHHhhccCcEEEE
Confidence 47999999999999999999999989999999999999998876 999999999999999999999974 578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
|++... ...++...++|||.||++++.|.++|.++.+.
T Consensus 79 ssh~ey--a~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 79 SSHAEY--ADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred ecchhh--hhhhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 998654 55677777899999999999999999988743
No 37
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.53 E-value=2.6e-13 Score=132.81 Aligned_cols=117 Identities=32% Similarity=0.519 Sum_probs=106.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILS 113 (632)
.+||||||++..+..++..|+..++.+..+.++.+++..+. . .||+||+|+.||+++|+++++.++....+|+|++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~--~~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-D--SIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh-c--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 48999999999999999999988999999999999999875 2 49999999999999999999999765559999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+..+.....++++.|+++|+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9999888899999999999999999999999999887653
No 38
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.53 E-value=3.3e-13 Score=132.80 Aligned_cols=119 Identities=38% Similarity=0.589 Sum_probs=109.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIIL 112 (632)
.++||||||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.||+.+|+++++.++..+.+|+|++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~l 83 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKE--QPDLVILDVMMPKLDGYGVCQEIRKESDVPIIML 83 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 57999999999999999999998899999999999999988764 4999999999999999999999986678999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|+..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 84 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 84 TALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred ECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999988899999999999999999999999998887653
No 39
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.53 E-value=2.7e-13 Score=135.36 Aligned_cols=117 Identities=25% Similarity=0.458 Sum_probs=106.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEec
Q 006774 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSA 114 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa 114 (632)
+||||||++..+..+...|+..++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++....+|+|++++
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt~ 80 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASET--VDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISG 80 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEEC
Confidence 7999999999999999999999999999999999999887654 99999999999999999999998767899999998
Q ss_pred CC-CHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 115 DG-RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 115 ~~-d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
.. +.....++++.||++|+.||++.++|...++.++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 54 5666778999999999999999999999999888753
No 40
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.52 E-value=4e-13 Score=133.11 Aligned_cols=119 Identities=29% Similarity=0.489 Sum_probs=109.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIII 111 (632)
..+||||||++..+..++..|...++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ 82 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRE--SFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999999999999999999999999988764 4999999999999999999999975 36899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+++..+......+++.|+++|+.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999887653
No 41
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.52 E-value=9.3e-13 Score=126.49 Aligned_cols=165 Identities=18% Similarity=0.253 Sum_probs=128.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPI 109 (632)
..+||||||++..+..++..|... ++.+. .+.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~i 80 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTR--PVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV 80 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 468999999999999999999876 57765 688999999888754 4999999999999999999999975 467999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccc----cccC-CccccccCCCChhhHHHHHH
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH----ENSG-SLEETDHHKRGSDEIEYASS 184 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~----~~~~-~le~~~~~~lt~~Eie~l~~ 184 (632)
|++|+..+.....++++.|+++|+.||++.++|..+++.++++........ .... .........++.+|.+.+..
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~re~~vl~~ 160 (210)
T PRK09935 81 LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTDTVLSNREVTILRY 160 (210)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCceeCHHHHHHHHhcccccCccccccCCHHHHHHHHH
Confidence 999999998888999999999999999999999999998876542211100 0000 00011223478889999988
Q ss_pred hhcCCchhhhhhhhh
Q 006774 185 VNEGTEGTFKAQRKR 199 (632)
Q Consensus 185 l~eG~~~~~k~~~k~ 199 (632)
+.+|.....++....
T Consensus 161 l~~g~s~~eIa~~l~ 175 (210)
T PRK09935 161 LVSGLSNKEIADQLL 175 (210)
T ss_pred HHcCCCHHHHHHHhC
Confidence 888866666555443
No 42
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.51 E-value=4.3e-13 Score=130.46 Aligned_cols=118 Identities=29% Similarity=0.419 Sum_probs=107.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~-~~iPIIIL 112 (632)
++||||||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.||+.+|+++++.++.. +.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 81 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQ--PPDLVILDVGLPDISGFELCRQLLAFHPALPVIFL 81 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 6899999999999999999998899999999999999988654 49999999999999999999999754 78999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
++..+......+++.||++|+.||++.++|..+++.++++.
T Consensus 82 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 82 TARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 99998888889999999999999999999999998877653
No 43
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.51 E-value=1.5e-13 Score=137.51 Aligned_cols=155 Identities=14% Similarity=0.101 Sum_probs=122.5
Q ss_pred HHHHHHHHHh---CCCeEEEEcCHHHHHHHHHHcCCCceEEE---EecCCCCCCHHHHHHHHh-ccCCCcEEEEecCCCH
Q 006774 46 LRILEQMLRR---CLYNVTTCSQAAVALDILRERKGCFDVVL---SDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRV 118 (632)
Q Consensus 46 r~~L~~lL~~---~gy~V~~a~sg~eALe~L~e~~~~pDLVI---LDi~MPdmdGleLL~~Lr-~~~~iPIIILSa~~d~ 118 (632)
|..++.+|.. .++.+..+.+++++++.+... .||++| +|+.||+++|++++++|+ ..+.+|||++|+..+.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~--~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~ 80 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRI--SFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIE 80 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccC--CCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCH
Confidence 5678888865 356677999999999988654 489998 688899999999999996 5678999999998877
Q ss_pred HHHHHHH-hcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccccccCCccccccCCCChhhHHHHHHhhcCCchhhhhhh
Q 006774 119 SAVMRGI-RHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQR 197 (632)
Q Consensus 119 e~~~eAl-~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~~~~~~le~~~~~~lt~~Eie~l~~l~eG~~~~~k~~~ 197 (632)
.....++ +.||.+|+.||.+.++|..+|+.++++............ .......++.+|.+++..+.+|..+..++.+
T Consensus 81 ~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~~~~~~~~~--~~~~~~~LT~RE~eVL~ll~~G~snkeIA~~ 158 (207)
T PRK11475 81 ARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQATDRLNNQW--YINQSRMLSPTEREILRFMSRGYSMPQIAEQ 158 (207)
T ss_pred HHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcccCHHHHHHh--hccCcCCCCHHHHHHHHHHHCCCCHHHHHHH
Confidence 7666666 799999999999999999999999886543322111100 0011345899999999999999999999998
Q ss_pred hhccccc
Q 006774 198 KRISAKE 204 (632)
Q Consensus 198 k~is~ke 204 (632)
..++.++
T Consensus 159 L~iS~~T 165 (207)
T PRK11475 159 LERNIKT 165 (207)
T ss_pred HCCCHHH
Confidence 8887663
No 44
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.51 E-value=5.5e-13 Score=130.63 Aligned_cols=117 Identities=27% Similarity=0.421 Sum_probs=107.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCC--CCHHHHHHHHhc-cCCCcEEE
Q 006774 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd--mdGleLL~~Lr~-~~~iPIII 111 (632)
+||||||++..+..+...|+..++.+..+.++.+++..+.... ||+||+|+.||+ .+|+++++.++. .+.+|+|+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRL--PDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCC--CCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 6999999999999999999988999999999999999887654 999999999997 589999999975 46799999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+|+..+......+++.||++|+.||++.++|...++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999888754
No 45
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.51 E-value=8.5e-13 Score=127.48 Aligned_cols=117 Identities=29% Similarity=0.502 Sum_probs=107.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 006774 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (632)
Q Consensus 36 VLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIILSa 114 (632)
|||+||++..+..+...|...++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||++++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~ 78 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKD--DYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTA 78 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEc
Confidence 58999999999999999998899999999999999988765 4999999999999999999999974 57899999999
Q ss_pred CCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 115 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 115 ~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
..+.....++++.|+++|+.||++.++|...++.++++..
T Consensus 79 ~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~ 118 (218)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSH 118 (218)
T ss_pred CCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999998887543
No 46
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.50 E-value=1.7e-13 Score=129.40 Aligned_cols=112 Identities=24% Similarity=0.454 Sum_probs=105.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006774 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIILS 113 (632)
..||||||..+...|...++..||.|.++.+.++++..++... |+-.++|+.|.+.+|+++++.|+. ..+.+||++|
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~--PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAP--PAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCC--CceEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 6899999999999999999999999999999999999998765 999999999999999999999974 5789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHH
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 148 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~ 148 (632)
++.+...+.+|++.||++||.||.+.+++..++..
T Consensus 89 Gy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 89 GYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred cchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 99999999999999999999999999998877653
No 47
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.49 E-value=6.5e-13 Score=156.88 Aligned_cols=150 Identities=21% Similarity=0.238 Sum_probs=128.6
Q ss_pred ChhHHHHHHHcCC-------CCCCCcccccccCCCCC---------------CCCcEEEEEeCCHHHHHHHHHHHHhCCC
Q 006774 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQF---------------PAGLRVLVVDDDITCLRILEQMLRRCLY 58 (632)
Q Consensus 1 Lai~~~lv~~~GG-------~G~gs~~~~~~~~p~~~---------------p~glrVLIVDDd~~ir~~L~~lL~~~gy 58 (632)
|+|++++++.||| .|.|++|...+|..... ..+.+||||||++..+..+...|...||
T Consensus 643 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~ 722 (828)
T PRK13837 643 LATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQAFFGPGPLPRGRGETVLLVEPDDATLERYEEKLAALGY 722 (828)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCccccCCCcccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCC
Confidence 6899999999999 46777777666542211 1246899999999999999999999999
Q ss_pred eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCC
Q 006774 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (632)
Q Consensus 59 ~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~ 137 (632)
++..+.++.++++.+......||+||+ .||+++|+++++.|+. .+.+|||++++........+++..| ++||.||+
T Consensus 723 ~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~ 799 (828)
T PRK13837 723 EPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPIILGGNSKTMALSPDLLASV-AEILAKPI 799 (828)
T ss_pred EEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCC
Confidence 999999999999998765445899999 6999999999999964 5789999999998888888999999 99999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 006774 138 REEELKNIWQHVVRKR 153 (632)
Q Consensus 138 ~~eeL~~~L~~vlr~~ 153 (632)
+..+|..+++++++..
T Consensus 800 ~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 800 SSRTLAYALRTALATA 815 (828)
T ss_pred CHHHHHHHHHHHHccc
Confidence 9999999999887643
No 48
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.48 E-value=2.3e-13 Score=159.80 Aligned_cols=119 Identities=29% Similarity=0.489 Sum_probs=110.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc--CCCc
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDLP 108 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~--~~iP 108 (632)
..+.+||||||+...+...+.+|+..|.+++.+.++.+|++.+.. .+.||+||+|++||.|||++..++||.. ..+|
T Consensus 664 l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~p 742 (786)
T KOG0519|consen 664 LTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKERWHLP 742 (786)
T ss_pred ccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhcCCCC
Confidence 458899999999999999999999999999999999999999972 3469999999999999999999999754 4899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
||.+|++.+.+...++++.|.++||.||++.+.|..+++.++
T Consensus 743 IvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 743 IVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred EEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998888765
No 49
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.48 E-value=8.7e-13 Score=131.70 Aligned_cols=162 Identities=12% Similarity=-0.021 Sum_probs=127.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---eEEEEcCHHHHHHHHHHcCCCceEEEEecC--CCCCCHHHHHHHHh-ccCCC
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDGFKLLEHIG-LEMDL 107 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy---~V~~a~sg~eALe~L~e~~~~pDLVILDi~--MPdmdGleLL~~Lr-~~~~i 107 (632)
|.|+||||++.++..++.+|+..++ .+..+.++.++++.+... .||+||+|+. |+..+|.+++++|+ ..+.+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~--~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~ 78 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSL--RPSVVFINEDCFIHDASNSQRIKQIINQHPNT 78 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhcc--CCCEEEEeCcccCCCCChHHHHHHHHHHCCCC
Confidence 4699999999999999999986542 456889999999988654 4999999966 88889999999996 46789
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcE-EEeCCCCHHHHHHHHHHHHHhhccccccccccCCccccccCCCChhhHHHHHHhh
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACD-YLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVN 186 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~D-YL~KP~~~eeL~~~L~~vlr~~~~~~~~~~~~~~le~~~~~~lt~~Eie~l~~l~ 186 (632)
+||++|+..+..... ++..|+.. |+.|+.+.++|..+++.+.++........ .. ....++.+|.+++..+.
T Consensus 79 ~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~~~~~------~~-~~~~LT~RE~eVL~lla 150 (207)
T PRK15411 79 LFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETTITSFL------NL-PTLSLSRTESSMLRMWM 150 (207)
T ss_pred eEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcccCccc------cC-CcccCCHHHHHHHHHHH
Confidence 999999987766543 55555544 88999999999999999987654322110 00 11248999999999999
Q ss_pred cCCchhhhhhhhhcccccc
Q 006774 187 EGTEGTFKAQRKRISAKEE 205 (632)
Q Consensus 187 eG~~~~~k~~~k~is~ke~ 205 (632)
+|.....++.+..++.++.
T Consensus 151 ~G~snkeIA~~L~iS~~TV 169 (207)
T PRK15411 151 AGQGTIQISDQMNIKAKTV 169 (207)
T ss_pred cCCCHHHHHHHcCCCHHHH
Confidence 9999999998888776643
No 50
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.46 E-value=7.4e-13 Score=133.37 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=126.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHH-HHHh-ccCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL-EHIG-LEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL-~~Lr-~~~~iPII 110 (632)
..++++|||++..+..|+.+|+.....+..+.++.++++.+. .||+||+|+.||+++|++++ +.++ ..+.++||
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vv 85 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKIL 85 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhCCCCcEE
Confidence 457999999999999999999854334567889999988642 38999999999999999997 5565 45789999
Q ss_pred EEecCCCHHHHHHHHh--cCCcEEEeCCCCHHHHHHHHHHHHHhhcccccccc-----ccCC--ccccccCCCChhhHHH
Q 006774 111 MMSADGRVSAVMRGIR--HGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE-----NSGS--LEETDHHKRGSDEIEY 181 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~--~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~~-----~~~~--le~~~~~~lt~~Eie~ 181 (632)
++|+..+. ...++. .||.+|+.|+.+.++|.++|+.+.++......... .... ........++.+|.++
T Consensus 86 vlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lt~rE~~V 163 (216)
T PRK10100 86 LLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEI 163 (216)
T ss_pred EEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcccCHHHHHHHHHhhcccccCCCccCCCCHHHHHH
Confidence 99998763 445555 59999999999999999999999876533221110 0000 0001123589999999
Q ss_pred HHHhhcCCchhhhhhhhhcccccc
Q 006774 182 ASSVNEGTEGTFKAQRKRISAKEE 205 (632)
Q Consensus 182 l~~l~eG~~~~~k~~~k~is~ke~ 205 (632)
+..+..|..+..++....++.++.
T Consensus 164 l~l~~~G~s~~eIA~~L~iS~~TV 187 (216)
T PRK10100 164 LNKLRIGASNNEIARSLFISENTV 187 (216)
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHH
Confidence 999999999888888777665533
No 51
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.46 E-value=4.4e-12 Score=122.79 Aligned_cols=118 Identities=28% Similarity=0.504 Sum_probs=107.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIIL 112 (632)
++||++||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.+|+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSE--MYALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 5799999999999999999998899999999999999887654 4999999999999999999999964 467999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+...+.....++++.|+++|+.||++.++|...++.++++.
T Consensus 79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 99999888899999999999999999999999998887654
No 52
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.45 E-value=1.7e-12 Score=129.28 Aligned_cols=115 Identities=26% Similarity=0.420 Sum_probs=98.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-Ce-EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCL-YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~g-y~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIII 111 (632)
++|+||||++..+..++.+|+..+ +. +..+.++.++++.+... .||++|+|+.||+++|+++++.++.....+||+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii~ 79 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRL--KPDVVFLDIQMPRISGLELVGMLDPEHMPYIVF 79 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHhcccCCCEEEE
Confidence 689999999999999999998876 33 45788999999988764 499999999999999999999996444456888
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
+|++. +...++++.|+.+|+.||++.++|..++.++.+.
T Consensus 80 vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 80 VTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 88765 4567899999999999999999999999988654
No 53
>PRK14084 two-component response regulator; Provisional
Probab=99.44 E-value=2.3e-12 Score=129.33 Aligned_cols=115 Identities=19% Similarity=0.369 Sum_probs=99.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-C-eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCL-Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~g-y-~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~-~~iPII 110 (632)
++||||||++..+..++.+|...+ + .+..+.++.+++..+.+. .||+||+|+.||+++|+++++.|+.. +..+||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~--~~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI 78 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLIN--QYDIIFLDINLMDESGIELAAKIQKMKEPPAII 78 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999998764 4 467899999999988765 49999999999999999999999753 456788
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
++|+..+ ...++++.|+.+|+.||++.++|..++.++.+.
T Consensus 79 ~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 79 FATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred EEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 8887654 567899999999999999999999999988754
No 54
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.44 E-value=6.7e-12 Score=119.02 Aligned_cols=167 Identities=18% Similarity=0.236 Sum_probs=128.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~-gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPI 109 (632)
.++|||+||++..+..+...|... ++.+ ..+.++.+++..+... .||+||+|+.+++++|+++++.++. .+..|+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 80 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQL--EPDIVILDLGLPGMNGLDVIPQLHQRWPAMNI 80 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHCCCCcE
Confidence 478999999999999999999865 4554 4788999999887654 4999999999999999999999974 467899
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccc-----cccCCccccccCCCChhhHHHHHH
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH-----ENSGSLEETDHHKRGSDEIEYASS 184 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~-----~~~~~le~~~~~~lt~~Eie~l~~ 184 (632)
|+++...+......++..|+.+|+.||++..+|...+..+++......... .............++.++.+++..
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~e~~vl~l 160 (211)
T PRK15369 81 LVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRYIDPALNREAILALLNADDTNPPLLTPRERQILKL 160 (211)
T ss_pred EEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCceeCHHHHHHHHHHhccCCCCcccCCCHHHHHHHHH
Confidence 999999998889999999999999999999999999998876532211100 000000112234578889999988
Q ss_pred hhcCCchhhhhhhhhcc
Q 006774 185 VNEGTEGTFKAQRKRIS 201 (632)
Q Consensus 185 l~eG~~~~~k~~~k~is 201 (632)
+.+|.....++....++
T Consensus 161 ~~~g~~~~~Ia~~l~~s 177 (211)
T PRK15369 161 ITEGYTNRDIAEQLSIS 177 (211)
T ss_pred HHCCCCHHHHHHHhCCC
Confidence 88887766666544433
No 55
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.44 E-value=2.7e-12 Score=130.57 Aligned_cols=118 Identities=28% Similarity=0.427 Sum_probs=104.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-C--CC
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-M--DL 107 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~-gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~-~--~i 107 (632)
.++||||||++..+..+...|... ++.+ ..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. . ..
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQ--PDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 479999999999999999999864 4554 47999999999998654 9999999999999999999999743 2 37
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
|||++|+..+.....++++.|+++|+.||++.++|...++++++.
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 899999999999899999999999999999999999999887654
No 56
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.43 E-value=7.6e-13 Score=142.49 Aligned_cols=118 Identities=22% Similarity=0.431 Sum_probs=105.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~~iP 108 (632)
...+||||||++..+..+..+|.+ .+.+..+.++.+|+..+.+. .||+||+|+.||+++|+++++.++. .+.+|
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~--~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAET--NYDLVIVSANFENYDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccC--CCCEEEecCCCCCchHhHHHHHHHhccccCCCc
Confidence 467899999999999999999976 47777899999999987654 4999999999999999999999974 36899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
||++|++.+.+...++++.||+||+.||++.++|...+....+.
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888766543
No 57
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.43 E-value=9.3e-12 Score=119.57 Aligned_cols=168 Identities=18% Similarity=0.301 Sum_probs=129.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~-gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iP 108 (632)
...+||||||++..+..++..|... ++.+ ..+.++.+++..+.... ||+||+|+.+++++|+++++.++. .+..|
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~ 82 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGR 82 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 3478999999999999999999764 4554 46889999999887654 999999999999999999999964 46789
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccc----c-c-cC--CccccccCCCChhhHH
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH----E-N-SG--SLEETDHHKRGSDEIE 180 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~----~-~-~~--~le~~~~~~lt~~Eie 180 (632)
+|+++...+......+++.|+++|+.||++.++|...++.++++........ . . .. .........++.+|.+
T Consensus 83 vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 162 (216)
T PRK10651 83 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERD 162 (216)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHHhhcccCccccccccCCHHHHH
Confidence 9999999888888899999999999999999999999999886532111100 0 0 00 0001112247889999
Q ss_pred HHHHhhcCCchhhhhhhhhcc
Q 006774 181 YASSVNEGTEGTFKAQRKRIS 201 (632)
Q Consensus 181 ~l~~l~eG~~~~~k~~~k~is 201 (632)
++..+.+|..+..++....++
T Consensus 163 vl~~l~~g~~~~~ia~~l~is 183 (216)
T PRK10651 163 ILKLIAQGLPNKMIARRLDIT 183 (216)
T ss_pred HHHHHHcCCCHHHHHHHcCCC
Confidence 999999887776666654433
No 58
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.42 E-value=2.8e-12 Score=121.05 Aligned_cols=119 Identities=31% Similarity=0.467 Sum_probs=107.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
...+|||+||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.+++++|+++++.++. .+.+|+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii 79 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGL--RFGCVVTDVRMPGIDGIELLRRLKARGSPLPVI 79 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccC--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEE
Confidence 346899999999999999999998899999999999999888654 4999999999999999999999964 4678999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
+++...+......+++.|+.+|+.||+..+++...+..+++.
T Consensus 80 ~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 999999988899999999999999999999999988887764
No 59
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.41 E-value=7.8e-12 Score=119.72 Aligned_cols=164 Identities=22% Similarity=0.237 Sum_probs=125.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~-~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPI 109 (632)
.++||||||++..+..+...|.. .++.+. .+.+..+++..+... .||+||+|+.+++++|+++++.++. .+..|+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRL--DPDVILLDLNMKGMSGLDTLNALRRDGVTAQI 83 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCcHHHHHHHHHHhCCCCeE
Confidence 47899999999999999999975 467765 688999999887654 4999999999999999999999974 457899
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccc----cc-cC-CccccccCCCChhhHHHHH
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH----EN-SG-SLEETDHHKRGSDEIEYAS 183 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~----~~-~~-~le~~~~~~lt~~Eie~l~ 183 (632)
|+++...+......+++.|+++|+.||++.++|..+++.++++........ .. .. .........++.+|.+++.
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~e~~vl~ 163 (215)
T PRK10403 84 IILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELDVLH 163 (215)
T ss_pred EEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCCeecCHHHHHHHHhhhccCCCCcccccCCHHHHHHHH
Confidence 999988888888899999999999999999999999998765432111100 00 00 0011112357889999999
Q ss_pred HhhcCCchhhhhhhh
Q 006774 184 SVNEGTEGTFKAQRK 198 (632)
Q Consensus 184 ~l~eG~~~~~k~~~k 198 (632)
.+.+|.....++...
T Consensus 164 ~~~~g~s~~~ia~~l 178 (215)
T PRK10403 164 ELAQGLSNKQIASVL 178 (215)
T ss_pred HHHCCCCHHHHHHHc
Confidence 888886665555433
No 60
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.41 E-value=7e-12 Score=123.37 Aligned_cols=117 Identities=27% Similarity=0.429 Sum_probs=107.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILS 113 (632)
.+||||||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|+|+++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~ 88 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQT--PPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVT 88 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 3899999999999999999999899999999999999988764 49999999999999999999999876789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
...+......+++.|+++|+.||++.++|...++.++++
T Consensus 89 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~ 127 (240)
T PRK10710 89 AKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhh
Confidence 998888888999999999999999999999999887764
No 61
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.41 E-value=4.6e-13 Score=140.14 Aligned_cols=63 Identities=57% Similarity=0.869 Sum_probs=60.8
Q ss_pred CCCCCcccchHHHHHHHHHHHHHhccccccHHHHHHHhcCCCcChHHHHHHHHHHHHHHHHhh
Q 006774 217 TTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLN 279 (632)
Q Consensus 217 ~~kK~rv~wt~eLh~~Fl~av~~LgidkA~pK~ILelM~v~gltre~taSHLqRvr~ylk~L~ 279 (632)
..||+|++||.+||++|++||++||.++|+||+|+++|++.++||++|+|||||||.+.+++.
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~ 294 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLA 294 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccccc
Confidence 578999999999999999999999999999999999999999999999999999999999883
No 62
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.41 E-value=2.6e-12 Score=140.35 Aligned_cols=119 Identities=37% Similarity=0.628 Sum_probs=109.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
..++||||||++..+..++..|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ--VFDLVLCDVRMAEMDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEE
Confidence 358999999999999999999999999999999999999988764 4999999999999999999999964 5679999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
++|++.+.+...++++.|+.+|+.||++.++|...+.++++.
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred EEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887754
No 63
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.40 E-value=4.4e-12 Score=139.33 Aligned_cols=119 Identities=34% Similarity=0.530 Sum_probs=108.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPI 109 (632)
+...+||||||++..+..+...|...+|.+..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 2 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlillD~~~p~~~g~~ll~~i~~~~~~~pv 79 (457)
T PRK11361 2 TAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIH--PDVVLMDIRMPEMDGIKALKEMRSHETRTPV 79 (457)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 34568999999999999999999999999999999999999887654 999999999999999999999964 468999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
|++|+..+.+...++++.|++||+.||++.++|...++.++.
T Consensus 80 I~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 80 ILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred EEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999988877654
No 64
>PRK13557 histidine kinase; Provisional
Probab=99.40 E-value=6.8e-12 Score=138.07 Aligned_cols=150 Identities=23% Similarity=0.318 Sum_probs=127.2
Q ss_pred ChhHHHHHHHcCC-------CCCCCcccccccCCCCC--------------CCCcEEEEEeCCHHHHHHHHHHHHhCCCe
Q 006774 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQF--------------PAGLRVLVVDDDITCLRILEQMLRRCLYN 59 (632)
Q Consensus 1 Lai~~~lv~~~GG-------~G~gs~~~~~~~~p~~~--------------p~glrVLIVDDd~~ir~~L~~lL~~~gy~ 59 (632)
|++++++++.+|| .|.|+.|+..++..... ..+.+||||||++..+..+..+|+..+|.
T Consensus 362 L~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~ 441 (540)
T PRK13557 362 LSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPEQEPKARAIDRGGTETILIVDDRPDVAELARMILEDFGYR 441 (540)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCCCCCCCcccccCCCceEEEEcCcHHHHHHHHHHHHhcCCe
Confidence 6899999999999 46677777665542110 12468999999999999999999988999
Q ss_pred EEEEcCHHHHHHHHHHcCCCceEEEEecCCCC-CCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCC
Q 006774 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (632)
Q Consensus 60 V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-mdGleLL~~Lr~-~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~ 137 (632)
+..+.++.++++.+... ..||+||+|..|++ ++|+++++.|+. .+.+|+|+++...+......++..|+.+|+.||+
T Consensus 442 v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~ 520 (540)
T PRK13557 442 TLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVLLTTGYAEASIERTDAGGSEFDILNKPY 520 (540)
T ss_pred EEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEEEEcCCCchhhhhhhccccCCceeeCCC
Confidence 99999999999988643 24999999999997 999999999974 4678999999988888888888999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 006774 138 REEELKNIWQHVVR 151 (632)
Q Consensus 138 ~~eeL~~~L~~vlr 151 (632)
+.++|...++.++.
T Consensus 521 ~~~~l~~~l~~~~~ 534 (540)
T PRK13557 521 RRAELARRVRMVLD 534 (540)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999887764
No 65
>PRK15115 response regulator GlrR; Provisional
Probab=99.39 E-value=5.1e-12 Score=138.60 Aligned_cols=118 Identities=29% Similarity=0.511 Sum_probs=108.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIII 111 (632)
..+||||||++..+..+...|+..++.+..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~--~~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIv 82 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNRE--KVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVII 82 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 47899999999999999999999999999999999999988764 4999999999999999999999964 56799999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
+|+..+.....++++.|+.+|+.||++.++|...+..+++.
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999888764
No 66
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.39 E-value=6.3e-12 Score=138.91 Aligned_cols=117 Identities=35% Similarity=0.495 Sum_probs=108.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIIL 112 (632)
.+||||||++..+..++.+|+..+|.+..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~--~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvl 81 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKT--PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 58999999999999999999999999999999999999987654 999999999999999999999974 467999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
|+..+.+...++++.|+.+|+.||++.++|...+.+++..
T Consensus 82 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred ECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887754
No 67
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.37 E-value=7.5e-12 Score=137.29 Aligned_cols=112 Identities=25% Similarity=0.425 Sum_probs=102.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCC-----CCHHHHHHHHh-ccCCCcE
Q 006774 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIG-LEMDLPV 109 (632)
Q Consensus 36 VLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-----mdGleLL~~Lr-~~~~iPI 109 (632)
||||||++..+..+...| .+|.+..+.++.+|++.+.... ||+||+|+.||+ ++|+++++.++ ..+.+||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~~--~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRHE--PAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999888 6899999999999999998654 999999999996 89999999996 4578999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
|++|+..+.+...++++.||+||+.||++.++|..+++++++
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999887765
No 68
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.37 E-value=9.2e-12 Score=132.41 Aligned_cols=115 Identities=24% Similarity=0.327 Sum_probs=96.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLR-RCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~-~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIII 111 (632)
++||||||++..+..++.+|. ..++.+. .+.++.++++.+.... ||+|++|+.||+++|++++++|+....+|+|+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~~--pDlVllD~~mp~~~G~e~l~~l~~~~~~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQP--PDVILMDLEMPRMDGVEATRRIMAERPCPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhccC--CCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999994 5578775 7899999999998654 99999999999999999999997666799999
Q ss_pred EecCCC--HHHHHHHHhcCCcEEEeCCC---------CHHHHHHHHHHHH
Q 006774 112 MSADGR--VSAVMRGIRHGACDYLIKPI---------REEELKNIWQHVV 150 (632)
Q Consensus 112 LSa~~d--~e~~~eAl~~GA~DYL~KP~---------~~eeL~~~L~~vl 150 (632)
+++..+ .....++++.|+++|+.||+ ..++|...++.+.
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 998743 55667899999999999999 3445555555443
No 69
>PRK13435 response regulator; Provisional
Probab=99.34 E-value=2.9e-11 Score=111.50 Aligned_cols=118 Identities=21% Similarity=0.288 Sum_probs=101.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCC-CCCHHHHHHHHhccCCCcE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPV 109 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MP-dmdGleLL~~Lr~~~~iPI 109 (632)
..++|||+|+++.....+...|+..++.+. .+.++.++++.+... .||+||+|+.++ +.+|+++++.++....+|+
T Consensus 4 ~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~dliivd~~~~~~~~~~~~~~~l~~~~~~pi 81 (145)
T PRK13435 4 RQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRR--QPDVALVDVHLADGPTGVEVARRLSADGGVEV 81 (145)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhc--CCCEEEEeeecCCCCcHHHHHHHHHhCCCCCE
Confidence 357999999999999999999998888876 789999999988654 499999999998 5899999999976678999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
|+++...+. ..++..|+++|+.||++.++|...++++..++.
T Consensus 82 i~ls~~~~~---~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (145)
T PRK13435 82 VFMTGNPER---VPHDFAGALGVIAKPYSPRGVARALSYLSARRV 123 (145)
T ss_pred EEEeCCHHH---HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence 999876442 467789999999999999999999998876543
No 70
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.34 E-value=7.1e-11 Score=101.63 Aligned_cols=119 Identities=33% Similarity=0.562 Sum_probs=104.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCe-EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDL 107 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~---~~i 107 (632)
+.++|+++|+++.....++..|...++. +..+.+..+++..+... .+|++++|..+++++|+++++.++.. +.+
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~ 81 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFVISDWNMPNMDGLELLKTIRADGAMSAL 81 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhcc--CCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCC
Confidence 3579999999999999999999988884 77888999999887654 49999999999999999999999743 468
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
|+|+++...+.....++++.|+++|+.||++.+++...+++++++
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 82 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred cEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 999999888888888999999999999999999999999887754
No 71
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.33 E-value=1.6e-11 Score=135.23 Aligned_cols=115 Identities=35% Similarity=0.516 Sum_probs=105.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 006774 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (632)
Q Consensus 36 VLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIILSa 114 (632)
||||||++..+..+...|...++.+..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||++|+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~ 78 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARG--QPDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTA 78 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeC
Confidence 68999999999999999999999999999999999988764 4999999999999999999999964 46789999999
Q ss_pred CCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 115 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 115 ~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
..+.....++++.|+++|+.||++.++|...+++++..
T Consensus 79 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 79 HSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887653
No 72
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.31 E-value=5e-11 Score=128.44 Aligned_cols=118 Identities=35% Similarity=0.524 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~---~~iPII 110 (632)
.+||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+.+|+++++.++.. +.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQ--PDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 48999999999999999999988999999999999999987654 9999999999999999999999753 468999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
++++..+.....++++.|+++|+.||++.++|..++..+++.+
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998877643
No 73
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.29 E-value=6.1e-11 Score=126.87 Aligned_cols=104 Identities=33% Similarity=0.454 Sum_probs=90.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPII 110 (632)
.++||||||++..+..++.+|... ++.+. .+.++.++++.+.... ||+|++|+.||+++|++++++|+....+|+|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~--~DlVllD~~mp~~dgle~l~~i~~~~~~piI 80 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLN--PDVITLDVEMPVMDGLDALEKIMRLRPTPVV 80 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhC--CCEEEEeCCCCCCChHHHHHHHHHhCCCCEE
Confidence 479999999999999999999876 77776 8999999999887654 9999999999999999999999755559999
Q ss_pred EEecCC--CHHHHHHHHhcCCcEEEeCCCC
Q 006774 111 MMSADG--RVSAVMRGIRHGACDYLIKPIR 138 (632)
Q Consensus 111 ILSa~~--d~e~~~eAl~~GA~DYL~KP~~ 138 (632)
++|+.. ......++++.|+++|+.||+.
T Consensus 81 vls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 81 MVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred EEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 999753 3456678999999999999984
No 74
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.26 E-value=5.7e-11 Score=136.48 Aligned_cols=118 Identities=20% Similarity=0.228 Sum_probs=103.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIII 111 (632)
.++||||||++..+..+..+|...+|.+..+.++.+++..+... .||+||+|+.||+++|++++++|+. .+.+|||+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~--~~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~ 84 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAG--EIDCVVADHEPDGFDGLALLEAVRQTTAVPPVVV 84 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhcc--CCCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEE
Confidence 47999999999999999999988899999999999999988754 4999999999999999999999974 56899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHH--HHHHHHHHHHHh
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREE--ELKNIWQHVVRK 152 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~e--eL~~~L~~vlr~ 152 (632)
+|+..+.+...++++.|+.+|+.||.... .+..+++.++..
T Consensus 85 lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 85 VPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999997543 555566555543
No 75
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.25 E-value=4.5e-11 Score=127.63 Aligned_cols=104 Identities=35% Similarity=0.471 Sum_probs=93.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC--CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPII 110 (632)
.+|||||||....|..++++|...+ +.|.++.++.+|++.+.+.. ||+|.+|+.||.|||+++++.|.....+|||
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~--PDVi~ld~emp~mdgl~~l~~im~~~p~pVi 78 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLK--PDVITLDVEMPVMDGLEALRKIMRLRPLPVI 78 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC--CCEEEEecccccccHHHHHHHHhcCCCCcEE
Confidence 3799999999999999999999887 56679999999999998875 9999999999999999999999777899999
Q ss_pred EEecCCC--HHHHHHHHhcCCcEEEeCCCC
Q 006774 111 MMSADGR--VSAVMRGIRHGACDYLIKPIR 138 (632)
Q Consensus 111 ILSa~~d--~e~~~eAl~~GA~DYL~KP~~ 138 (632)
|+++... .+...+++++||.||+.||..
T Consensus 79 mvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 79 MVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 9987443 567789999999999999963
No 76
>PRK09191 two-component response regulator; Provisional
Probab=99.16 E-value=6.4e-10 Score=112.24 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=98.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCC-CCHHHHHHHHhccCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPd-mdGleLL~~Lr~~~~iPII 110 (632)
..+|||+||++..+..++..|+..++.+. .+.++.++++.+... .||+||+|+.||+ ++|+++++.++....+|||
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~--~~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii 214 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKT--RPGLILADIQLADGSSGIDAVNDILKTFDVPVI 214 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhcc--CCCEEEEecCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 45799999999999999999998888887 688999999988764 4999999999995 8999999999754489999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
++|+..+... .+...++.+|+.||++.++|...++++...
T Consensus 215 ~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 215 FITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 9998766543 334567889999999999999999887643
No 77
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.15 E-value=1.9e-10 Score=113.06 Aligned_cols=119 Identities=24% Similarity=0.332 Sum_probs=102.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIII 111 (632)
.++||++||++..+..+...|...||.++ .+.++.++.+.+.... ||+||+|+.||..|-.+-+.....+...|||+
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~--pDvVildie~p~rd~~e~~~~~~~~~~~piv~ 82 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQ--PDVVILDIEMPRRDIIEALLLASENVARPIVA 82 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcC--CCEEEEecCCCCccHHHHHHHhhcCCCCCEEE
Confidence 57899999999999999999999999754 6777888888877665 99999999999998544444445567889999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+|++++.+.+..+++.|+.+|++||++...|+.++.-+..+.
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf 124 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRF 124 (194)
T ss_pred EEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999888776543
No 78
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.09 E-value=2e-09 Score=87.92 Aligned_cols=111 Identities=35% Similarity=0.565 Sum_probs=97.9
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecC
Q 006774 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSAD 115 (632)
Q Consensus 37 LIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIILSa~ 115 (632)
+++|+++..+..+...+...++.+..+.+..+++..+... .+|++++|..+++.+|+++++.++. .+.+|+++++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE--KPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhC--CCCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEec
Confidence 4789999999999999998899998999999999988764 4999999999999999999999965 467899999988
Q ss_pred CCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 006774 116 GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 116 ~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
.......++++.|+.+|+.||++.++|...++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 7778888899999999999999999998877643
No 79
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.03 E-value=4.4e-10 Score=90.68 Aligned_cols=54 Identities=69% Similarity=1.065 Sum_probs=51.7
Q ss_pred CCcccchHHHHHHHHHHHHHhcc-ccccHHHHHHHhcCCCcChHHHHHHHHHHHH
Q 006774 220 KPRVVWSVELHQQFVSAVNQLGI-DKAVPKRILELMNVPGLTRENVASHLQKFRL 273 (632)
Q Consensus 220 K~rv~wt~eLh~~Fl~av~~Lgi-dkA~pK~ILelM~v~gltre~taSHLqRvr~ 273 (632)
|+|+.|+.|+|..|++++..+|. +.|+||+|+++|+..++|+.+|+||+|||++
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 57899999999999999999998 8999999999999999999999999999985
No 80
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=99.00 E-value=1.6e-10 Score=124.09 Aligned_cols=73 Identities=11% Similarity=0.236 Sum_probs=67.2
Q ss_pred CcChHHHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCccee--eeeccCCCCChHHHHHHHHh-hcCC
Q 006774 258 GLTRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI--QALAASGQIPPQTLAALHAE-LLGR 333 (632)
Q Consensus 258 gltre~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i--~iL~KpGkL~~ee~~imk~~-~~G~ 333 (632)
....+.|..|-.|+..|+..| |.++||+++.++.+..|+.||||||++| +||.|||+||++||++||.| ..|+
T Consensus 143 ~~kd~~t~~Hs~~va~~a~~i---a~~lgl~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt~eE~~~ik~H~~~g~ 218 (344)
T COG2206 143 KAKDDYTYGHSVRVAELAEAI---AKKLGLSEEKIEELALAGLLHDIGKIGIPDSILNKPGKLTEEEFEIIKKHPIYGY 218 (344)
T ss_pred cccchhHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHhhcccccCCHHHhCCCCCCCHHHHHHHHhchHHHH
Confidence 344457999999999999999 9999999999999999999999999999 99999999999999999995 4465
No 81
>PRK10693 response regulator of RpoS; Provisional
Probab=98.96 E-value=4.6e-09 Score=110.65 Aligned_cols=90 Identities=24% Similarity=0.461 Sum_probs=79.7
Q ss_pred EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCC-CH
Q 006774 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI-RE 139 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~-~~ 139 (632)
.+.++.+|++.+... .||+||+|+.||+++|++++++++. .+.+|||++|+..+.+...++++.|++||+.||+ +.
T Consensus 2 ~a~~g~~al~~l~~~--~pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~ 79 (303)
T PRK10693 2 LAANGVDALELLGGF--TPDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDL 79 (303)
T ss_pred EeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcH
Confidence 467899999988764 4999999999999999999999974 4679999999999999999999999999999999 58
Q ss_pred HHHHHHHHHHHHhh
Q 006774 140 EELKNIWQHVVRKR 153 (632)
Q Consensus 140 eeL~~~L~~vlr~~ 153 (632)
++|...+.++++..
T Consensus 80 ~~L~~~i~~~l~~~ 93 (303)
T PRK10693 80 NRLREMVFACLYPS 93 (303)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999888877543
No 82
>PRK15029 arginine decarboxylase; Provisional
Probab=98.93 E-value=7.4e-09 Score=120.94 Aligned_cols=119 Identities=12% Similarity=0.173 Sum_probs=94.1
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHH----HHHHHH
Q 006774 34 LRVLVVDDDIT--------CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF----KLLEHI 101 (632)
Q Consensus 34 lrVLIVDDd~~--------ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGl----eLL~~L 101 (632)
|||||||||.. .++.|+..|+..+|+|..+.++.+|++.+... ..||+||+|++||+++|+ +++++|
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 58999999995 69999999999999999999999999999763 249999999999999997 899999
Q ss_pred hc-cCCCcEEEEecCCC--HHHHHHHHhcCCcEEEeCCCC-HHHHHHHHHHHHHhhc
Q 006774 102 GL-EMDLPVIMMSADGR--VSAVMRGIRHGACDYLIKPIR-EEELKNIWQHVVRKRW 154 (632)
Q Consensus 102 r~-~~~iPIIILSa~~d--~e~~~eAl~~GA~DYL~KP~~-~eeL~~~L~~vlr~~~ 154 (632)
|. ..++|||++|+..+ .......++ -+++|+.+--+ .+.+...+....+++.
T Consensus 80 R~~~~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 135 (755)
T PRK15029 80 HERQQNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_pred HhhCCCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHHHHHHHHHHHHHHH
Confidence 85 46899999999886 333333333 37788888754 4444455666655543
No 83
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.82 E-value=1.8e-08 Score=103.59 Aligned_cols=115 Identities=29% Similarity=0.449 Sum_probs=97.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~-gy~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
++|+++||++..++.++.++... ..+ +..+.++.++++.+... .+|++++|+.||+++|+++.+.|+. .+..+|+
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Iv 79 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGDPRPAIV 79 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc--CCCeEEEeeccCccchHHHHHHhcccCCCCeEE
Confidence 68999999999999999999832 222 23788999999998876 4999999999999999999999986 4567788
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
++|++.+. +..+++..|.||+.||+..+.|...+....+.
T Consensus 80 fvt~~~~~--a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 80 FVTAHDEY--AVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEehHHH--HHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 89987654 56777889999999999999999999876553
No 84
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=97.97 E-value=1e-05 Score=97.17 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=66.3
Q ss_pred ChhHHHHHHHcCC-------CCCCCcccccccCCCC----------CCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEE
Q 006774 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQ----------FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTC 63 (632)
Q Consensus 1 Lai~~~lv~~~GG-------~G~gs~~~~~~~~p~~----------~p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a 63 (632)
|+|++++|++||| .|.|++|+..+++... ...+.+||||||++.++..++.+|+.+|++|..+
T Consensus 640 LaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~~~~~~~~~~~~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a 719 (894)
T PRK10618 640 FFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKMLAADPEVEEEEEKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITP 719 (894)
T ss_pred HHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEccCCcccccccccccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEc
Confidence 6899999999999 5889998887775311 1246899999999999999999999999999988
Q ss_pred cCHHHHHHHHHHcCCCceEEEEecCC
Q 006774 64 SQAAVALDILRERKGCFDVVLSDVHM 89 (632)
Q Consensus 64 ~sg~eALe~L~e~~~~pDLVILDi~M 89 (632)
.+.. . ...||+||+|+.+
T Consensus 720 ~~~~------~--~~~~Dlvl~D~~~ 737 (894)
T PRK10618 720 DERL------I--SQEYDIFLTDNPS 737 (894)
T ss_pred Cccc------c--CCCCCEEEECCCC
Confidence 7632 1 2359999999984
No 85
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=97.95 E-value=7.8e-05 Score=88.63 Aligned_cols=144 Identities=19% Similarity=0.194 Sum_probs=116.2
Q ss_pred ChhHHHHHHHcCC-------CCCCCcccccccCCCC-----------CCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEE
Q 006774 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQ-----------FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTT 62 (632)
Q Consensus 1 Lai~~~lv~~~GG-------~G~gs~~~~~~~~p~~-----------~p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~ 62 (632)
|+|++++++.||| .|.|++|++.+++... ...+.+|+|+||++..+..+..+|...++.+..
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~~~~~~~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~ 565 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPIIDGLPTDCLAGKRLLYVEPNSAAAQATLDILSETPLEVTY 565 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccccccCCccccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 6899999999999 4778888877765321 124679999999999999999999999999999
Q ss_pred EcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH-hc--cCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCH
Q 006774 63 CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE 139 (632)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~L-r~--~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~ 139 (632)
+.+..+ +.. ..||++++|+.||+.++.+.+... +. ....++|+++...+......+.+.|+++|+.||+..
T Consensus 566 ~~~~~~----l~~--~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~ 639 (919)
T PRK11107 566 SPTLSQ----LPE--AHYDILLLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSH 639 (919)
T ss_pred cCCHHH----hcc--CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCH
Confidence 888887 222 359999999999988776655444 32 234567888888888888889999999999999999
Q ss_pred HHHHHHHHHHH
Q 006774 140 EELKNIWQHVV 150 (632)
Q Consensus 140 eeL~~~L~~vl 150 (632)
.++...+....
T Consensus 640 ~~l~~~l~~~~ 650 (919)
T PRK11107 640 TRLLPALLEPC 650 (919)
T ss_pred HHHHHHHHHhh
Confidence 99988887654
No 86
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.82 E-value=1.9e-05 Score=87.29 Aligned_cols=94 Identities=35% Similarity=0.511 Sum_probs=82.2
Q ss_pred CCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 57 gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
.++|.++..+.+++..+.... ||.+++|+.||+++|+++++.++..+.. ++++|...+.....+.+++|+++++.||
T Consensus 12 ~~~v~~a~~g~~~l~~~~~~~--~~~~lld~~m~~~~~~~~~~~lk~~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~ 88 (435)
T COG3706 12 YKEVATAKKGLIALAILLDHK--PDYKLLDVMMPGMDGFELCRRLKAEPAT-VVMVTALDDSAPRVRGLKAGADDFLTKP 88 (435)
T ss_pred hhhhhhccchHHHHHHHhcCC--CCeEEeecccCCcCchhHHHHHhcCCcc-eEEEEecCCCCcchhHHhhhhhhhccCC
Confidence 356777999999999988755 9999999999999999999999876655 8889998888889999999999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 006774 137 IREEELKNIWQHVVRKR 153 (632)
Q Consensus 137 ~~~eeL~~~L~~vlr~~ 153 (632)
.....+....+.+.+.+
T Consensus 89 ~~~~~~~~r~~~l~~~k 105 (435)
T COG3706 89 VNDSQLFLRAKSLVRLK 105 (435)
T ss_pred CChHHHHHhhhhhccch
Confidence 99998888887776543
No 87
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.28 E-value=0.0021 Score=58.47 Aligned_cols=106 Identities=14% Similarity=0.169 Sum_probs=74.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH-hccCCCcEEEEe
Q 006774 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMS 113 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~L-r~~~~iPIIILS 113 (632)
||||||||..-+..|+.+|+-.|+.+..+....- ....... ..+.+++-..-.+ ...++++.+ +..+.+||+++.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~--~~~~~~v~~g~~~-~~~~~l~~l~~~~~~~Pvlllg 76 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSS--PWEACAVILGSCS-KLAELLKELLKWAPHIPVLLLG 76 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhc--CCcEEEEEecCch-hHHHHHHHHHhhCCCCCEEEEC
Confidence 6999999999999999999998998887775443 2333322 2444443332222 445667776 467899999998
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
........ ..+.+-|..|++..+|..+++++
T Consensus 77 ~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 77 EHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 76655111 12667799999999999988764
No 88
>PRK12704 phosphodiesterase; Provisional
Probab=97.24 E-value=0.00059 Score=77.66 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=37.4
Q ss_pred cEEEEecCCCHH--HHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 108 PVIMMSADGRVS--AVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 108 PIIILSa~~d~e--~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.+|++|+.+... .+..+++.++.|+..||+..+++...++.-+.
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVD 296 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 388899988765 88899999999999999999999887765543
No 89
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.23 E-value=0.0025 Score=44.82 Aligned_cols=55 Identities=38% Similarity=0.606 Sum_probs=47.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCC
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MP 90 (632)
++|+++++++..+..+...+...++.+..+.+..++...+... .+|++++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE--KPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCC
Confidence 4799999999999999999998899998999999999888654 499999998653
No 90
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=96.25 E-value=0.04 Score=50.41 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=77.1
Q ss_pred HHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCC--CCHHHHHHHHh-ccCCCcEEEEecCCCHHHHH
Q 006774 46 LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIG-LEMDLPVIMMSADGRVSAVM 122 (632)
Q Consensus 46 r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd--mdGleLL~~Lr-~~~~iPIIILSa~~d~e~~~ 122 (632)
...|...|+..+++|+.+.+.++++..++... +++.|++|+. ++ ....++++.++ .+..+||.+++.....+.+-
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~-~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~ 83 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIESFT-DIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDLP 83 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHCTT-TEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCCC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHhCC-CeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccCC
Confidence 45677778878999999999999999998764 7899999987 21 23467888886 46899999999866444433
Q ss_pred HHHhcCCcEEEeCCC-CHHHHHHHHHHHHHh
Q 006774 123 RGIRHGACDYLIKPI-REEELKNIWQHVVRK 152 (632)
Q Consensus 123 eAl~~GA~DYL~KP~-~~eeL~~~L~~vlr~ 152 (632)
..+-..+++|+.... +++.+...|.++.++
T Consensus 84 ~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~~ 114 (115)
T PF03709_consen 84 AEVLGEVDGFIWLFEDTAEFIARRIEAAARR 114 (115)
T ss_dssp HHHHCCESEEEETTTTTHHHHHHHHHHHHHH
T ss_pred HHHHhhccEEEEecCCCHHHHHHHHHHHHHh
Confidence 344456789998884 566666777776654
No 91
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.94 E-value=0.2 Score=46.05 Aligned_cols=105 Identities=10% Similarity=-0.036 Sum_probs=74.6
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEE---cCHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhcc-CCCcEEEEe
Q 006774 40 DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLE-MDLPVIMMS 113 (632)
Q Consensus 40 DDd~~ir~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVILDi~MPdm--dGleLL~~Lr~~-~~iPIIILS 113 (632)
|.+..=...+..+|+..||+|... ...++.++.+.+.. +|+|.+...++.. .--++++.++.. +.-..|++.
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~--~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQED--VDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 666666777888899999998753 45777888877765 9999998877632 234556666543 433445566
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHH
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L 146 (632)
+....+...++.++|+++|+..-.+.++....+
T Consensus 88 G~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 88 GIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 555556667778999999999888888776554
No 92
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.48 E-value=0.41 Score=45.35 Aligned_cols=115 Identities=15% Similarity=0.044 Sum_probs=82.6
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---cCHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhc
Q 006774 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (632)
Q Consensus 33 glrVLIV----DDd~~ir~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVILDi~MPdm--dGleLL~~Lr~ 103 (632)
+.+||+. |.+..=...+..+|+..||+|+.. ...++..+.+.+.. ||+|.+...+... ...++++.++.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~--~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETD--ADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCccccCHHHHHHHHHHHHh
Confidence 4578887 778888888999999999999753 45777788777654 9999999888743 24566777754
Q ss_pred c-C-CCcEEEEecCC------CHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 006774 104 E-M-DLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 104 ~-~-~iPIIILSa~~------d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
. . +++|+ +.+.. ..+...++.+.|++.+....-+.+++...+++.+
T Consensus 81 ~~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 81 AGLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred cCCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 3 3 55444 44332 2344567789999888887788888887777654
No 93
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=94.47 E-value=0.45 Score=43.13 Aligned_cols=94 Identities=11% Similarity=-0.019 Sum_probs=63.5
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE---EcCHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhccCC-CcEEEEe
Q 006774 40 DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLEMD-LPVIMMS 113 (632)
Q Consensus 40 DDd~~ir~~L~~lL~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVILDi~MPdm--dGleLL~~Lr~~~~-iPIIILS 113 (632)
|.+..=...+..+|+..||+|.. ....++.++.+.+.+ ||+|.+...+... +..++++.++.... -..|++.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~--pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEED--ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 55666677888999999999864 335667777777665 9999998876542 35667777765432 2345555
Q ss_pred cCCCHHHHHHHHhcCCcEEEeC
Q 006774 114 ADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~K 135 (632)
+..-......+.+.|++.|+..
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred CCCCChhHHHHHHcCCeEEECC
Confidence 5544443456778999777653
No 94
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.82 E-value=1.5 Score=41.28 Aligned_cols=110 Identities=8% Similarity=-0.058 Sum_probs=74.5
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE---EcCHHHHHHHHHHcCCCceEEEEecCCCC-CC-HHHHHHHHhcc-CCCcEEEEe
Q 006774 40 DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGLE-MDLPVIMMS 113 (632)
Q Consensus 40 DDd~~ir~~L~~lL~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVILDi~MPd-md-GleLL~~Lr~~-~~iPIIILS 113 (632)
|-+..-...+..+|+..||+|.. ..+.++..+...+.. +|+|.+...+.. +. --++++.|++. .....|++.
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~--adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 45566667788889999999874 456788888887764 999988766643 22 23455556542 322334445
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
+....+...+..++|+++|+..--+..++...+.+.++
T Consensus 91 G~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 91 GVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred CCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 43444556677899999999877888888877776554
No 95
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=93.47 E-value=0.69 Score=54.86 Aligned_cols=118 Identities=12% Similarity=0.074 Sum_probs=77.7
Q ss_pred cEEEEEeCCH-HH-----HHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCC
Q 006774 34 LRVLVVDDDI-TC-----LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (632)
Q Consensus 34 lrVLIVDDd~-~i-----r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr-~~~~ 106 (632)
|+|+|||++- .. ...|...|+..||+|..+.+..++...++.. ...+.|++|+.-. ..++++.++ ...+
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 76 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWDEY---SLDLCSDINQLNEY 76 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecccc---hHHHHHHHHHhCCC
Confidence 4788888773 11 4456667778899999999999999988854 4789999995332 355888886 4679
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHHHHHhhcc
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKRWN 155 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~-~~eeL~~~L~~vlr~~~~ 155 (632)
+||+++........+....-.-+++|+..-. +.+.+...|.+..+++..
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~y~~ 126 (713)
T PRK15399 77 LPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEYLD 126 (713)
T ss_pred CCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 9999987654333222222233556666543 345555556666655543
No 96
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=92.69 E-value=0.89 Score=53.98 Aligned_cols=117 Identities=13% Similarity=0.159 Sum_probs=75.6
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCC
Q 006774 34 LRVLVVDDDI-T-----CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (632)
Q Consensus 34 lrVLIVDDd~-~-----ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr-~~~~ 106 (632)
|+|+||+++. . -.+.|...|++.||+|..+.+..+++..++.. ...+.|++|+.- ...++++.++ ....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 76 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDK---YNLELCEEISKMNEN 76 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecch---hhHHHHHHHHHhCCC
Confidence 5688887772 1 24456667788899999999999999988854 478999999532 2255788886 4679
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCC-CCHHHHHHHHHHHHHhhc
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKP-IREEELKNIWQHVVRKRW 154 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL~KP-~~~eeL~~~L~~vlr~~~ 154 (632)
+||+++........+-...-.-+++|+..- -+.+.+...|.+..+++.
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~~y~ 125 (714)
T PRK15400 77 LPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTDEYI 125 (714)
T ss_pred CCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHHHHH
Confidence 999998765433222111222345565544 245555555666555543
No 97
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=90.30 E-value=0.79 Score=48.82 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=54.6
Q ss_pred CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe-cCCCHHHHHHHHhcCCcEEEeCC
Q 006774 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS-ADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 58 y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILS-a~~d~e~~~eAl~~GA~DYL~KP 136 (632)
.++..+.+..++-... ..-.+|++|..+-. ..+... .-+...+++++ ...+.+....+++.|+.|||.+|
T Consensus 2 ~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~----~~~~~~-~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P 72 (322)
T TIGR03815 2 VELDVAPDPEAARRAW----ARAPLVLVDADMAE----ACAAAG-LPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLP 72 (322)
T ss_pred CceEEccCchhhhhcc----ccCCeEEECchhhh----HHHhcc-CCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeCC
Confidence 4556666655554332 23678999864411 112221 11223355544 45678889999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 006774 137 IREEELKNIWQHVV 150 (632)
Q Consensus 137 ~~~eeL~~~L~~vl 150 (632)
++..+|...+.++.
T Consensus 73 ~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 73 EAEGWLVELLADLD 86 (322)
T ss_pred CCHHHHHHHHHhhc
Confidence 99999999887763
No 98
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=90.25 E-value=0.22 Score=48.47 Aligned_cols=45 Identities=16% Similarity=0.060 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCc--cccccccccccccCcCccee
Q 006774 262 ENVASHLQKFRLYLKRLNGVSQQGGITN--SFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 262 e~taSHLqRvr~ylk~L~~~A~~~Gls~--~~~e~i~~AspLHDiGKi~i 309 (632)
+.+-.|..||..++..| |..++.+. ...+.+..|+.||||||+.+
T Consensus 12 ~~~~~Hs~~Va~~A~~i---a~~~~~~~~~~d~~~l~~aaLLHDIGK~~~ 58 (164)
T TIGR00295 12 ESVRRHCLAVARVAMEL---AENIRKKGHEVDMDLVLKGALLHDIGRART 58 (164)
T ss_pred ccHHHHHHHHHHHHHHH---HHHhccccccCCHHHHHHHHHHhcCCcccC
Confidence 45889999999999999 88877432 45667888999999999853
No 99
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=90.23 E-value=0.11 Score=56.08 Aligned_cols=76 Identities=9% Similarity=-0.051 Sum_probs=51.0
Q ss_pred cHHHHHHHhcCCCcCh---------HHHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCccee-----ee
Q 006774 246 VPKRILELMNVPGLTR---------ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI-----QA 311 (632)
Q Consensus 246 ~pK~ILelM~v~gltr---------e~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i-----~i 311 (632)
+|..+.+.+...++.. +.+-.|..+|+..++.| |...|++. +.+..|..||||||+.+ .+
T Consensus 170 vP~~V~~YI~~~~LY~e~~l~~~~~~~~~~HSl~VA~~A~~L---A~~~g~d~---~~a~~AGLLHDIGK~~~~~~~~~~ 243 (342)
T PRK07152 170 LDPKVNDYINENFLYLEDILKSFLDEYRYKHCLRVAQLAAEL---AKKNNLDP---KKAYYAGLYHDITKEWDEEKHRKF 243 (342)
T ss_pred CCHHHHHHHHHcCccccHHHHHHhhHHHHHHHHHHHHHHHHH---HHHhCcCH---HHHHHHHHHHHhhccCCHHHHHHH
Confidence 5555555554444433 34778999999999999 99999876 66677889999999864 22
Q ss_pred eccCCCCChHHHHHHHH
Q 006774 312 LAASGQIPPQTLAALHA 328 (632)
Q Consensus 312 L~KpGkL~~ee~~imk~ 328 (632)
+.+. .++.+++..+..
T Consensus 244 ~~~~-~~~~~~~~~~~~ 259 (342)
T PRK07152 244 LKKY-LKDVKNLPWYVL 259 (342)
T ss_pred HHhc-CCchhhcchHHH
Confidence 3332 345555554444
No 100
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=90.11 E-value=7.3 Score=37.03 Aligned_cols=108 Identities=12% Similarity=0.029 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHhCCCeEEE---EcCHHHHHHHHHHcCCCceEEEEecCCCC-CC-HHHHHHHHhcc-CCCcEEEEecC
Q 006774 42 DITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGLE-MDLPVIMMSAD 115 (632)
Q Consensus 42 d~~ir~~L~~lL~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVILDi~MPd-md-GleLL~~Lr~~-~~iPIIILSa~ 115 (632)
+..=...+..+|+..||+|+. ..+.++.++...+.. +|+|-+...|.. +. --++.+.|++. ..-++|++-+.
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~--adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~ 91 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETK--ADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGN 91 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCC
Confidence 344456788899999999874 567888888887764 999999887753 22 33455666532 22234555553
Q ss_pred -----CCHH-HHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 116 -----GRVS-AVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 116 -----~d~e-~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.+.. ...++.++|++..+...-..+++...+++.++
T Consensus 92 ~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 92 LVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred cCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 1222 23457789998888877888998888877653
No 101
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=89.33 E-value=4.1 Score=42.48 Aligned_cols=111 Identities=21% Similarity=0.202 Sum_probs=73.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHH------hCCCeEE--EEcCHHHHHHHHHHcCCCceEEEEecCCC---------CCCHH
Q 006774 33 GLRVLVVDDDITCLRILEQMLR------RCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP---------DMDGF 95 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~------~~gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MP---------dmdGl 95 (632)
.+|+=|+.|+.....-+...++ +.||.|. ++.|...|.++.. . .+++| || +..-.
T Consensus 93 ~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~-~--G~~~v-----mPlg~pIGsg~Gi~~~ 164 (248)
T cd04728 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLED-A--GCAAV-----MPLGSPIGSGQGLLNP 164 (248)
T ss_pred eEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-c--CCCEe-----CCCCcCCCCCCCCCCH
Confidence 3677777766543333333222 3388876 4556666655543 3 37777 66 11126
Q ss_pred HHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC-----CCCHHHHHHHHHHHHH
Q 006774 96 KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVR 151 (632)
Q Consensus 96 eLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K-----P~~~eeL~~~L~~vlr 151 (632)
++++.|+...++|||+=.+-...+.+.++++.|++..+.- .-++..+...+..++.
T Consensus 165 ~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~ 225 (248)
T cd04728 165 YNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVE 225 (248)
T ss_pred HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHH
Confidence 8888887667899999888889999999999999998654 3446666666666654
No 102
>PRK15320 transcriptional activator SprB; Provisional
Probab=89.08 E-value=6.3 Score=40.09 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=94.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEE
Q 006774 35 RVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIM 111 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~~--gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr-~~~~iPIII 111 (632)
.|+|-.|.=...-.+..++++. +..|.+|.+....+..++.. ||.+++=.--|...-+ +...++ ..++-||++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~~---p~a~lil~l~p~eh~~-lf~~l~~~l~~~~v~v 78 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSDM---PDAGLILALNPHEHVY-LFHALLTRLQNRKVLV 78 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhhC---CCceEEEeeCchhHHH-HHHHHHHHcCCCceEE
Confidence 5788888877888888888875 56678888888888888753 6655543333433322 223332 346778888
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHH-------------HHHHh-hccc-ccccccc-C-Cccc------
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ-------------HVVRK-RWNE-NKEHENS-G-SLEE------ 168 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~-------------~vlr~-~~~~-~~~~~~~-~-~le~------ 168 (632)
++..--.....-.--.|+.||+.| +||..+++ +...+ .+.. ....... + ..++
T Consensus 79 v~d~l~~~dr~vl~~~g~~~~~l~----~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (251)
T PRK15320 79 VADRLYYIDRCVLQYFGVMDYVLK----DELSCAIRSEREKLRLPEAWLRFCHRPQKKTVAATYAFNAGETPEEVLFNIN 154 (251)
T ss_pred EecceeehhhhhhhhhcchhHHHH----HHHHHHhcccccccCCcHHHHHHhcCccccccceeeeccCCCChHHHhhhcc
Confidence 886543333222234688888876 44444332 21111 0000 0000000 0 0000
Q ss_pred -----cccCCCChhhHHHHHHhhcCCchhhhhhhhhccccc
Q 006774 169 -----TDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKE 204 (632)
Q Consensus 169 -----~~~~~lt~~Eie~l~~l~eG~~~~~k~~~k~is~ke 204 (632)
.....++.+|++++..+.+|.....++....++.++
T Consensus 155 ~~~~~~~~~~LSdREIEVL~LLAkG~SNKEIAekL~LS~KT 195 (251)
T PRK15320 155 QYAWWNLPPGVTQAKYALLILLSSGHPAIELAKKFGLGTKT 195 (251)
T ss_pred ceeeecCCCCCCHHHHHHHHHHHcCCCHHHHHHHhccchhh
Confidence 112457889999999999999888888877766553
No 103
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=88.89 E-value=0.24 Score=40.65 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCccee
Q 006774 263 NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 263 ~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (632)
.+..|..|+..++..+ |+..|++.. .+..|+.||||||+..
T Consensus 4 ~~~~H~~~v~~~a~~l---a~~~~~~~~---~l~~AalLHDiG~~~~ 44 (80)
T TIGR00277 4 NVLQHSLEVAKLAEAL---ARELGLDVE---LARRGALLHDIGKPIT 44 (80)
T ss_pred hHHHHHHHHHHHHHHH---HHHcCCCHH---HHHHHHHHHccCCccc
Confidence 4678999999999999 888887653 4778899999999853
No 104
>PRK00208 thiG thiazole synthase; Reviewed
Probab=88.67 E-value=4.3 Score=42.40 Aligned_cols=112 Identities=21% Similarity=0.169 Sum_probs=74.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHH------HhCCCeEE--EEcCHHHHHHHHHHcCCCceEEEEecCCC---------CCCHH
Q 006774 33 GLRVLVVDDDITCLRILEQML------RRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP---------DMDGF 95 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL------~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MP---------dmdGl 95 (632)
.+|+=|+.|+.....-+...+ -+.||.|. +..+...|.++.. . .+|+| || +..-.
T Consensus 93 ~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~-~--G~~~v-----mPlg~pIGsg~gi~~~ 164 (250)
T PRK00208 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEE-A--GCAAV-----MPLGAPIGSGLGLLNP 164 (250)
T ss_pred eEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-c--CCCEe-----CCCCcCCCCCCCCCCH
Confidence 467777776653332222222 23488876 4556666655543 3 37777 66 11116
Q ss_pred HHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe-----CCCCHHHHHHHHHHHHHh
Q 006774 96 KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (632)
Q Consensus 96 eLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~-----KP~~~eeL~~~L~~vlr~ 152 (632)
++++.|+...++|||+=.+-...+.+.++++.|+++.+. |.-++..+...+..+++.
T Consensus 165 ~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 165 YNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred HHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 778888766789999988888999999999999999865 434567777777666653
No 105
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=88.33 E-value=0.15 Score=44.77 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCccee
Q 006774 265 ASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 265 aSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (632)
..|..+|..+++.+ +...++ +...+.+..|+-||||||+..
T Consensus 2 ~~Hs~~V~~~a~~l---~~~~~~-~~~~~~l~~aaLlHDiGk~~~ 42 (122)
T PF01966_consen 2 FEHSLRVAELAERL---ADRLGL-EEDRELLRIAALLHDIGKIPT 42 (122)
T ss_dssp HHHHHHHHHHHHHH---HHHHTH-HHHHHHHHHHHHHTTTTHHST
T ss_pred hhHHHHHHHHHHHH---HHHcCC-chhHHHHHHHHHHHhcCCCCC
Confidence 57999999999999 777666 777888899999999999975
No 106
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=87.83 E-value=6.6 Score=35.10 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhCCCeEEEE---cCHHHHHHHHHHcCCCceEEEEecCC-CCC-CHHHHHHHHhcc-CCCcEEEEecC
Q 006774 42 DITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHM-PDM-DGFKLLEHIGLE-MDLPVIMMSAD 115 (632)
Q Consensus 42 d~~ir~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVILDi~M-Pdm-dGleLL~~Lr~~-~~iPIIILSa~ 115 (632)
++.-...+..+|++.|++|... .+.++..+.+++.+ ||+|.+...+ +.. ...++++.++.. ++++|++ -+.
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~--pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~-GG~ 89 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAER--PDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVV-GGP 89 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTT--CSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEE-EES
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCC--CcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEE-ECC
Confidence 3566778999999999999765 33466667777654 9999999844 333 346677777653 4555554 444
Q ss_pred CCHHHHHHHHh--cCCcEEEeC
Q 006774 116 GRVSAVMRGIR--HGACDYLIK 135 (632)
Q Consensus 116 ~d~e~~~eAl~--~GA~DYL~K 135 (632)
.-.....+.++ .|+|..+.-
T Consensus 90 ~~t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 90 HATADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp SSGHHHHHHHHHHHTSEEEEEE
T ss_pred chhcChHHHhccCcCcceecCC
Confidence 33333344554 566655543
No 107
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=87.02 E-value=5.6 Score=43.40 Aligned_cols=72 Identities=11% Similarity=0.100 Sum_probs=50.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCC--CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006774 35 RVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIIL 112 (632)
+|++-++|+.+.+.++.+.+++| |.+....+.. ..+++.. =.++-+.|=+.+--+.+..|+... -+++++
T Consensus 32 ~~~~~~~d~~~~~~~~~v~~~~gg~f~~~~~~~~~---~~~~~~~----g~vvhltmyg~~~~~~~~~i~~~~-~~~~~v 103 (339)
T PRK12703 32 SILVDERDETLENTIKKVVDNFGGSFEIKTGIEWK---SEFKKFH----GIRVHLTMYGRPIEDVIDEIRESG-KDVMVL 103 (339)
T ss_pred eeEecCCcHhHHHHHHHHHHhcCCCeEEEeccCHH---HHHHhcC----CEEEEEecCCCchHHHHHHHhccC-CCEEEE
Confidence 58999999999999999999986 4555444444 4444432 267778898888888889998422 245544
Q ss_pred ec
Q 006774 113 SA 114 (632)
Q Consensus 113 Sa 114 (632)
.+
T Consensus 104 vg 105 (339)
T PRK12703 104 VG 105 (339)
T ss_pred EC
Confidence 44
No 108
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.50 E-value=7.2 Score=34.38 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=59.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEE---cCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006774 35 RVLVVDDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIII 111 (632)
+||||...+.....++..+++.|++.... .........+...-...|+||+=.+.-..+....++..-...++|+++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 58999998888899999999999988877 222222212222222479998877666666677777765667889887
Q ss_pred EecCCCHHHHHHHH
Q 006774 112 MSADGRVSAVMRGI 125 (632)
Q Consensus 112 LSa~~d~e~~~eAl 125 (632)
.-.. ......+++
T Consensus 81 ~~~~-~~~~l~~~l 93 (97)
T PF10087_consen 81 SRSR-GVSSLERAL 93 (97)
T ss_pred ECCC-CHHHHHHHH
Confidence 6433 333344443
No 109
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=83.42 E-value=17 Score=35.74 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=49.4
Q ss_pred EEcCHHHHHHHHHHcCCCceEEEEecCCCCC--------CHHHHHHHHhccCC-CcEEEEecCCCHHHHHHHHhcCCcEE
Q 006774 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDM--------DGFKLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi~MPdm--------dGleLL~~Lr~~~~-iPIIILSa~~d~e~~~eAl~~GA~DY 132 (632)
.+.+..++.+.... .+|.|.++-..|.. .|++.+++++.... +||++..+- +.+.+.++++.||+.+
T Consensus 110 ~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv 185 (212)
T PRK00043 110 STHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGV 185 (212)
T ss_pred eCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 45566677665542 48999987555532 35888888865444 898887665 5677889999999998
Q ss_pred Ee
Q 006774 133 LI 134 (632)
Q Consensus 133 L~ 134 (632)
..
T Consensus 186 ~~ 187 (212)
T PRK00043 186 AV 187 (212)
T ss_pred EE
Confidence 64
No 110
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=83.15 E-value=22 Score=35.74 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=56.7
Q ss_pred HHHHHHh-CCCeE-EEEcCHHHHHHHHHHcCCCceEEEEecC-------CCCCCHHHHHHHHhccCCCcEEEEecCCCHH
Q 006774 49 LEQMLRR-CLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-------MPDMDGFKLLEHIGLEMDLPVIMMSADGRVS 119 (632)
Q Consensus 49 L~~lL~~-~gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~-------MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e 119 (632)
+...+++ .+..+ ..+.+.+++..... . .+|+|.+... ......++++++++...++|||...+-.+.+
T Consensus 110 ~i~~~~~~~~i~vi~~v~t~ee~~~a~~-~--G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~ 186 (221)
T PRK01130 110 LVKRIKEYPGQLLMADCSTLEEGLAAQK-L--GFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPE 186 (221)
T ss_pred HHHHHHhCCCCeEEEeCCCHHHHHHHHH-c--CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHH
Confidence 3333444 45444 35667777765443 2 3788765321 1122347888888766689999988888889
Q ss_pred HHHHHHhcCCcEEEeCC
Q 006774 120 AVMRGIRHGACDYLIKP 136 (632)
Q Consensus 120 ~~~eAl~~GA~DYL~KP 136 (632)
.+.++++.||+.++.=.
T Consensus 187 ~~~~~l~~GadgV~iGs 203 (221)
T PRK01130 187 QAKKALELGAHAVVVGG 203 (221)
T ss_pred HHHHHHHCCCCEEEEch
Confidence 99999999999886653
No 111
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=82.16 E-value=6.5 Score=36.89 Aligned_cols=107 Identities=20% Similarity=0.253 Sum_probs=71.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHH-----HHHHHhccCC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK-----LLEHIGLEMD 106 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGle-----LL~~Lr~~~~ 106 (632)
.+-+.+.||.+.........+|...+.+|+.-....+ +-.. .+|++|+.+-.+-..-+. +.+.+.. .+
T Consensus 10 ~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~----lp~~--hYD~~Ll~vavtfr~n~tm~~~~l~~Al~m-td 82 (140)
T COG4999 10 AGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSA----LPPA--HYDMMLLGVAVTFRENLTMQHERLAKALSM-TD 82 (140)
T ss_pred ccceeEEecCccHHHHHHHHHHhcCCceEEecccccc----cChh--hhceeeecccccccCCchHHHHHHHHHHhh-hc
Confidence 4678999999999999999999999999875443322 2122 389999998776444333 3333321 12
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHH
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L 146 (632)
- +|+--.......+.+....|+.++|.||++...|.-.+
T Consensus 83 ~-vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 83 F-VILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred c-eEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 2 22222223344456677899999999999998887633
No 112
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=81.94 E-value=17 Score=36.22 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=66.8
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---cCHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhc
Q 006774 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (632)
Q Consensus 33 glrVLIV----DDd~~ir~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVILDi~MPdm--dGleLL~~Lr~ 103 (632)
..||++. |.+..=...+..+|+..||+|+.. ...++.++.+.+.+ ||+|-+...|... ...++++.++.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHK--PDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHH
Confidence 4578877 677777788999999999998743 35677788887765 9999999877643 34556777764
Q ss_pred cC---CCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 104 EM---DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 104 ~~---~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
.. +++|++=-..-..+ -+-..|||.|-.-
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~d 191 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAED 191 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEECC
Confidence 43 45555433333332 3446799888653
No 113
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=81.57 E-value=38 Score=32.00 Aligned_cols=103 Identities=16% Similarity=0.040 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhCCCeEEE---EcCHHHHHHHHHHcCCCceEEEEecCCCC-CC-HHHHHHHHhcc--CCCcEEEEec
Q 006774 42 DITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGLE--MDLPVIMMSA 114 (632)
Q Consensus 42 d~~ir~~L~~lL~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVILDi~MPd-md-GleLL~~Lr~~--~~iPIIILSa 114 (632)
+..=...+..+|+..||+|+. ..+.++.++...++. +|+|.+...|.. +. --++++.+++. .+++|+ +-+
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~--adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vi-vGG 88 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD--ADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLY-VGG 88 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEE-EEC
Confidence 344456788899999999873 556788888877764 999999887764 33 34566666542 254444 433
Q ss_pred CC-----C-HHHHHHHHhcCCcEEEeCCCCHHHHHHHHH
Q 006774 115 DG-----R-VSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (632)
Q Consensus 115 ~~-----d-~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~ 147 (632)
.. + .+...++.++|++..+...-+++++...++
T Consensus 89 ~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 31 2 223455678999988887778887766554
No 114
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=79.76 E-value=1.1 Score=51.30 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=46.8
Q ss_pred HHHHHhccccccHHHHHHHhcCCCcChH---HHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCcc
Q 006774 235 SAVNQLGIDKAVPKRILELMNVPGLTRE---NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 235 ~av~~LgidkA~pK~ILelM~v~gltre---~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
+++..||+..-.| .++.+++...++.+ ++-.|..+++.++..| |..+|++... +..|..||||||+
T Consensus 299 ~~~~~~~~~~~~~-~~~~~l~~l~~r~~~~~~~l~Hs~~VA~lA~~L---A~~lgld~~~---a~~AGLLHDIGK~ 367 (514)
T TIGR03319 299 QAAFDLGVHGLHP-ELIKLLGRLKFRTSYGQNVLQHSIEVAHLAGIM---AAELGEDVKL---AKRAGLLHDIGKA 367 (514)
T ss_pred HHHHHhCCCcCCH-HHHHHHHHhhccccCCccHHHHHHHHHHHHHHH---HHHhCcCHHH---HHHHHHHHhcCcc
Confidence 4566666665433 34444554444433 3678999999999999 9999987754 4568899999997
No 115
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=78.24 E-value=1.6 Score=44.69 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCcce
Q 006774 260 TRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFD 308 (632)
Q Consensus 260 tre~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~ 308 (632)
.-+++-+|+.||...+..| |.+.|.+. +.+..|+-||||||..
T Consensus 33 ~~~~~l~H~~~Va~lA~~I---a~~~g~D~---~l~~~aaLLHDIg~~~ 75 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRI---AEEEGVDP---DLALRAALLHDIGKAI 75 (222)
T ss_pred ccchHHHHHHHHHHHHHHH---HHHcCCCH---HHHHHHHHHHhhcccc
Confidence 3457999999999999999 88888744 5667788999999985
No 116
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=77.84 E-value=39 Score=35.73 Aligned_cols=115 Identities=19% Similarity=0.201 Sum_probs=75.4
Q ss_pred CcEEEEEeCC-------HHHHHHHHHHHHhCCCeEEEEc--CHHHHHHHHHHcCCCceEEEEecCCCCCC--H---HHHH
Q 006774 33 GLRVLVVDDD-------ITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMD--G---FKLL 98 (632)
Q Consensus 33 glrVLIVDDd-------~~ir~~L~~lL~~~gy~V~~a~--sg~eALe~L~e~~~~pDLVILDi~MPdmd--G---leLL 98 (632)
.+|+=|+-|+ ....+..+. |-+.||.|.... |..-|.++. +.- -.+++=+--|-.+ | ...+
T Consensus 107 wIKLEVi~D~~~LlPD~~etl~Aae~-Lv~eGF~VlPY~~~D~v~a~rLe-d~G---c~aVMPlgsPIGSg~Gl~n~~~l 181 (267)
T CHL00162 107 FVKLEVISDPKYLLPDPIGTLKAAEF-LVKKGFTVLPYINADPMLAKHLE-DIG---CATVMPLGSPIGSGQGLQNLLNL 181 (267)
T ss_pred eEEEEEeCCCcccCCChHHHHHHHHH-HHHCCCEEeecCCCCHHHHHHHH-HcC---CeEEeeccCcccCCCCCCCHHHH
Confidence 3566556433 233344444 445699987443 444454443 221 2344545555333 3 3567
Q ss_pred HHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEE-----eCCCCHHHHHHHHHHHHHh
Q 006774 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL-----IKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 99 ~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL-----~KP~~~eeL~~~L~~vlr~ 152 (632)
+.|+...++|||+=.+-...+.+..+++.|+++.+ .|--++.++...++.+++.
T Consensus 182 ~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 182 QIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred HHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 77777888999999999999999999999999874 5667888898888887753
No 117
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=77.17 E-value=27 Score=41.89 Aligned_cols=116 Identities=10% Similarity=-0.034 Sum_probs=74.4
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---EcCHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhcc
Q 006774 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLE 104 (632)
Q Consensus 34 lrVLIV----DDd~~ir~~L~~lL~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVILDi~MPdm--dGleLL~~Lr~~ 104 (632)
.||++. |.+..-...+..+|+..||+|.. ..+.++..+...+.. +|+|++-..+... ..-++++.|+..
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~--a~ivvlcs~d~~~~e~~~~l~~~Lk~~ 660 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEND--VHVVGVSSLAAGHKTLVPALIEALKKL 660 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcC--CCEEEEeccchhhHHHHHHHHHHHHhc
Confidence 355543 33444556677888888999863 346778888877654 8988886655432 244667777644
Q ss_pred CCCcE-EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 105 MDLPV-IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 105 ~~iPI-IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
-.-.| |++.+..-.+......++|+++|+..=.+..++...+.+.++
T Consensus 661 G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 661 GREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred CCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 21123 445544233334556689999999988888888777776654
No 118
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=77.02 E-value=32 Score=34.61 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=51.5
Q ss_pred EEEcCHHHHHHHHHHcCCCceEEEEecC-C------CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 61 TTCSQAAVALDILRERKGCFDVVLSDVH-M------PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~-M------PdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
..+.+.+++...... .+|++.+... . .....+++++.++...++||+...+-.+.+.+.++++.||+..+
T Consensus 128 v~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~ 204 (219)
T cd04729 128 ADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVV 204 (219)
T ss_pred EECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 456777787665542 3788765321 1 12235788888876568999998888888999999999999987
Q ss_pred eC
Q 006774 134 IK 135 (632)
Q Consensus 134 ~K 135 (632)
.-
T Consensus 205 vG 206 (219)
T cd04729 205 VG 206 (219)
T ss_pred Ec
Confidence 64
No 119
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=76.80 E-value=30 Score=35.21 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=67.5
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEc---CHHHHHHHHHHcCCCceEEEEecCCCC-CC-HHHHHHHHh
Q 006774 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (632)
Q Consensus 32 ~glrVLIV----DDd~~ir~~L~~lL~~~gy~V~~a~---sg~eALe~L~e~~~~pDLVILDi~MPd-md-GleLL~~Lr 102 (632)
..-+|++. |.+..=...+..+|+..||+|+... ..++.++.+.+.+ ||+|.+...|+. +. -.++++.|+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~--~~~V~lS~~~~~~~~~~~~~i~~L~ 164 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHK--ADIIGLSGLLVPSLDEMVEVAEEMN 164 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEccchhccHHHHHHHHHHHH
Confidence 34578877 7777777888999999999997543 4777788887765 999999988874 22 345677776
Q ss_pred cc-CCCcEEEEecCCCHHHHHH---HHhcCCcEEEeC
Q 006774 103 LE-MDLPVIMMSADGRVSAVMR---GIRHGACDYLIK 135 (632)
Q Consensus 103 ~~-~~iPIIILSa~~d~e~~~e---Al~~GA~DYL~K 135 (632)
.. .+++|++=-..-+.+...+ +-..|||.|-.-
T Consensus 165 ~~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~d 201 (213)
T cd02069 165 RRGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKD 201 (213)
T ss_pred hcCCCCeEEEEChhcCHHHHhhhhccccCCCceEecC
Confidence 43 3556554433333333322 124689877654
No 120
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=75.51 E-value=31 Score=36.13 Aligned_cols=101 Identities=12% Similarity=0.089 Sum_probs=68.1
Q ss_pred HHHHHHHHhCCCeE--EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEecCCCHHHHH
Q 006774 47 RILEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVM 122 (632)
Q Consensus 47 ~~L~~lL~~~gy~V--~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr--~~~~iPIIILSa~~d~e~~~ 122 (632)
..+++.|..-...+ ........+.+++... .||.|++|+.=...|--++...++ ....++.++.....+...+.
T Consensus 8 n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~ 85 (256)
T PRK10558 8 NKFKAALAAKQVQIGCWSALANPITTEVLGLA--GFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIK 85 (256)
T ss_pred HHHHHHHHcCCceEEEEEcCCCcHHHHHHHhc--CCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHH
Confidence 34666666533222 2222334555666554 499999998777777666666665 23457777888888999999
Q ss_pred HHHhcCCcEEEeCC-CCHHHHHHHHHHH
Q 006774 123 RGIRHGACDYLIKP-IREEELKNIWQHV 149 (632)
Q Consensus 123 eAl~~GA~DYL~KP-~~~eeL~~~L~~v 149 (632)
++++.|+++.+.-= -+.++.+.+++.+
T Consensus 86 r~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 86 RLLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred HHhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 99999999987644 4677777666654
No 121
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=74.18 E-value=62 Score=28.57 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=29.0
Q ss_pred CHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 006774 117 RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVRK 152 (632)
Q Consensus 117 d~e~~~eAl~~GA~DYL~KP~--~~eeL~~~L~~vlr~ 152 (632)
..+.+..+++.|..=|+-||+ +.+++.+.++.+-+.
T Consensus 75 h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 75 HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 456778899999999999996 888888877766543
No 122
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=73.70 E-value=2.6 Score=43.41 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhc----CCCccccccccccccccCcCcceeeeeccCCCCChHHHHHHHH
Q 006774 263 NVASHLQKFRLYLKRLNGVSQQG----GITNSFCAPIETNVKLGSLGRFDIQALAASGQIPPQTLAALHA 328 (632)
Q Consensus 263 ~taSHLqRvr~ylk~L~~~A~~~----Gls~~~~e~i~~AspLHDiGKi~i~iL~KpGkL~~ee~~imk~ 328 (632)
..-.|+.||..++..| +++- +.+. +.+..|+-|||||+... ..++++++.|++.....
T Consensus 55 ~~~~Hs~RV~~~a~~i---a~~e~~~~~~D~---evl~lAALLHDIG~~~~--~~~~~~~~fe~~ga~~A 116 (228)
T TIGR03401 55 ETYNHSLRVYYYGLAI---ARDQFPEWDLSD---ETWFLTCLLHDIGTTDE--NMTATKMSFEFYGGILA 116 (228)
T ss_pred hhhHHHHHHHHHHHHH---HHHhccccCCCH---HHHHHHHHHHhhccccc--cCCcccCCHHHHHHHHH
Confidence 5779999999999999 6532 4444 56788999999998753 23667888888855544
No 123
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=73.01 E-value=61 Score=31.34 Aligned_cols=116 Identities=14% Similarity=-0.007 Sum_probs=73.1
Q ss_pred CcEEEE----EeCCHHHHHHHHHHHHhCCCeEE---EEcCHHHHHHHHHHcCCCceEEEEecCCCC-C-CHHHHHHHHhc
Q 006774 33 GLRVLV----VDDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIGL 103 (632)
Q Consensus 33 glrVLI----VDDd~~ir~~L~~lL~~~gy~V~---~a~sg~eALe~L~e~~~~pDLVILDi~MPd-m-dGleLL~~Lr~ 103 (632)
..|||| .|-+..-.+.+.+.|+..||+|+ ...+.+|+.+..-+. +.|+|.+...-.. + ..-++++.+++
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~--dv~vIgvSsl~g~h~~l~~~lve~lre 89 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE--DVDVIGVSSLDGGHLTLVPGLVEALRE 89 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc--CCCEEEEEeccchHHHHHHHHHHHHHH
Confidence 345555 47777778899999999999987 467888988877654 4888877643221 1 12334455554
Q ss_pred cCCCcEE-EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 006774 104 EMDLPVI-MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 104 ~~~iPII-ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
.---.|+ +.-+.-..+...+..++|++.++.--....+...-+...+
T Consensus 90 ~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 90 AGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred hCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 3222333 3444444444556668999998876566666655554443
No 124
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=73.01 E-value=43 Score=34.93 Aligned_cols=99 Identities=14% Similarity=0.077 Sum_probs=66.1
Q ss_pred HHHHHHhCCCeE--EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEEEecCCCHHHHHHH
Q 006774 49 LEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRG 124 (632)
Q Consensus 49 L~~lL~~~gy~V--~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~--~~~iPIIILSa~~d~e~~~eA 124 (632)
+++.|+.-...+ ........+.+++... .||.|++|..=..+|--++...++. ...++.++.....+...+.++
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~ 80 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLA--GFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRL 80 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhc--CCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHH
Confidence 445555432222 2223334555666554 4999999987777776666666652 345677778888899999999
Q ss_pred HhcCCcEEEeCC-CCHHHHHHHHHHH
Q 006774 125 IRHGACDYLIKP-IREEELKNIWQHV 149 (632)
Q Consensus 125 l~~GA~DYL~KP-~~~eeL~~~L~~v 149 (632)
++.|+++.+.-= -+.++.+.+++.+
T Consensus 81 LD~Ga~gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 81 LDIGFYNFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred hcCCCCEEEecCcCCHHHHHHHHHHc
Confidence 999999987744 4677777666543
No 125
>PRK00106 hypothetical protein; Provisional
Probab=71.68 E-value=3.4 Score=47.65 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=46.9
Q ss_pred HHHHHhccccccHHHHHHHhcCCCcChH---HHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCcc
Q 006774 235 SAVNQLGIDKAVPKRILELMNVPGLTRE---NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 235 ~av~~LgidkA~pK~ILelM~v~gltre---~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
+++..+|+..-.| +++.+++-..++.+ ++-.|...+...+..| |..+|++ .+.+..|.-||||||+
T Consensus 320 ~a~~~lg~~~~~~-e~~~~lg~l~~r~sy~qnl~~HSv~VA~lA~~l---A~~lgld---~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 320 AAAYEIGAPNLHP-DLIKIMGRLQFRTSYGQNVLRHSVEVGKLAGIL---AGELGEN---VALARRAGFLHDMGKA 388 (535)
T ss_pred HHHHHcCCCCCCH-HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHH---HHHhCCC---HHHHHHHHHHHhccCc
Confidence 4455555554444 34444555444443 4899999999999999 9999975 3567778889999999
No 126
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.55 E-value=35 Score=36.35 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=60.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC------CCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc--CC
Q 006774 35 RVLVVDDDITCLRILEQMLRRC------LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MD 106 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~~------gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~--~~ 106 (632)
.|||-|++.... .+...+... ..-.+.+.+.+++.+.+.. .+|+|++|-..|+ +--++++.++.. ..
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a---gaDiI~LDn~~~e-~l~~~v~~l~~~~~~~ 230 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA---GADIIMLDNMTPE-EIREVIEALKREGLRE 230 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CcCEEEECCCCHH-HHHHHHHHHHhcCcCC
Confidence 389999986555 555655432 1234578999999999864 3899999954332 223334444321 12
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
-..|..|+.-+.+.+.+..+.|+|.+-
T Consensus 231 ~~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 231 RVKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred CEEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 235667777788888888899987553
No 127
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=71.28 E-value=17 Score=38.74 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=59.4
Q ss_pred EEEEEeCCHHHHH---HHHHHHH----hC--CCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 006774 35 RVLVVDDDITCLR---ILEQMLR----RC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (632)
Q Consensus 35 rVLIVDDd~~ir~---~L~~lL~----~~--gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~ 105 (632)
.|||-|+|-.... .++..++ .. ....+.+.+.++|.+.+.. .+|+|++| +|+..+-.+.++.++...
T Consensus 158 ~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lD-n~~~e~l~~~v~~l~~~~ 233 (277)
T TIGR01334 158 TLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLD-KFTPQQLHHLHERLKFFD 233 (277)
T ss_pred hheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEEC-CCCHHHHHHHHHHHhccC
Confidence 3677777654432 2333332 21 2234578899999998864 38999999 454444445555554322
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEE
Q 006774 106 DLPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 106 ~iPIIILSa~~d~e~~~eAl~~GA~DY 132 (632)
.-.+|-.++.-+.+.+.+....|++-+
T Consensus 234 ~~~~leasGGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 234 HIPTLAAAGGINPENIADYIEAGIDLF 260 (277)
T ss_pred CCEEEEEECCCCHHHHHHHHhcCCCEE
Confidence 233566788888888888888998754
No 128
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=71.28 E-value=46 Score=35.21 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=66.3
Q ss_pred HHHHHHHhCCCeE--EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEecCCCHHHHHH
Q 006774 48 ILEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMR 123 (632)
Q Consensus 48 ~L~~lL~~~gy~V--~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr--~~~~iPIIILSa~~d~e~~~e 123 (632)
.+++.|..-...+ ......-.+.+++... .||.|++|..=...|--++...++ ....+..++.....+...+.+
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~--GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHc--CCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHH
Confidence 4566666533222 2222334555666554 499999998777666666665554 234566677777888899999
Q ss_pred HHhcCCcEEEeCCC-CHHHHHHHHHHH
Q 006774 124 GIRHGACDYLIKPI-REEELKNIWQHV 149 (632)
Q Consensus 124 Al~~GA~DYL~KP~-~~eeL~~~L~~v 149 (632)
+++.||.+.+.--+ +.++.+.+++..
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 99999999988554 567776666544
No 129
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=71.26 E-value=49 Score=34.44 Aligned_cols=99 Identities=16% Similarity=0.091 Sum_probs=66.5
Q ss_pred HHHHHHhCC--CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEEEecCCCHHHHHHH
Q 006774 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRG 124 (632)
Q Consensus 49 L~~lL~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~--~~~iPIIILSa~~d~e~~~eA 124 (632)
++..|+.-. +-+..........+.+... .+|.|++|+.=...+.-++...++. .....+++.....+...+.++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~--g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~ 80 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGA--GFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQL 80 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhc--CCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHH
Confidence 445555432 2222333344556666554 4999999997666777777776653 334577777777788889999
Q ss_pred HhcCCcEEEe-CCCCHHHHHHHHHHH
Q 006774 125 IRHGACDYLI-KPIREEELKNIWQHV 149 (632)
Q Consensus 125 l~~GA~DYL~-KP~~~eeL~~~L~~v 149 (632)
++.|+++.+. |--+.++++.+++.+
T Consensus 81 Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 81 LDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred hCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 9999998865 446788887777654
No 130
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=71.25 E-value=41 Score=33.59 Aligned_cols=78 Identities=8% Similarity=0.137 Sum_probs=58.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIII 111 (632)
-+++|+.+++..++.++++++.+| |+|....+.+++++-++.....|.|+..+....+ .++-++..-.. .-|+++
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~~~-~~p~LI 108 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAHRK-GEPLLI 108 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhhcc-CCcEEE
Confidence 368999999999999999999885 7789999999999988743335788888888766 44444332122 456666
Q ss_pred Eec
Q 006774 112 MSA 114 (632)
Q Consensus 112 LSa 114 (632)
+-+
T Consensus 109 vvG 111 (176)
T PRK03958 109 VVG 111 (176)
T ss_pred EEc
Confidence 655
No 131
>PRK12705 hypothetical protein; Provisional
Probab=70.31 E-value=5.1 Score=46.01 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=43.9
Q ss_pred HHHHhccccccHHHHHHHhcCCCcChH---HHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCcc
Q 006774 236 AVNQLGIDKAVPKRILELMNVPGLTRE---NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 236 av~~LgidkA~pK~ILelM~v~gltre---~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
++..+|+..-.| .++..|+....+.+ ++-.|..++..++..| |..+|++.+. +..|+.||||||.
T Consensus 294 a~~~lgi~~~~~-~li~~Lg~L~~R~sygqnvl~HSl~VA~lA~~L---A~~lGld~d~---a~~AGLLHDIGK~ 361 (508)
T PRK12705 294 VLEELGIFDLKP-GLVRLLGRLYFRTSYGQNVLSHSLEVAHLAGII---AAEIGLDPAL---AKRAGLLHDIGKS 361 (508)
T ss_pred HHHHhccccccH-HHHHHHHHHhhcccCCchHHHHHHHHHHHHHHH---HHHcCcCHHH---HHHHHHHHHcCCc
Confidence 444456554333 23333433332222 4778999999999999 9999998754 4568899999996
No 132
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.29 E-value=56 Score=33.35 Aligned_cols=90 Identities=16% Similarity=0.219 Sum_probs=56.9
Q ss_pred HHHHhCC-CeEEEEcCHHHHHHHHHHcC-CCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhc
Q 006774 51 QMLRRCL-YNVTTCSQAAVALDILRERK-GCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRH 127 (632)
Q Consensus 51 ~lL~~~g-y~V~~a~sg~eALe~L~e~~-~~pDLVILDi~MPdmdGleLL~~Lr~~-~~iPIIILSa~~d~e~~~eAl~~ 127 (632)
..|...+ .-|....+.++|++.++... ..++ ++.+.+-..++++.++.++.. +++ +|-.-.--+.+.+..++++
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~~p~~-~IGAGTVl~~~~a~~a~~a 86 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKEVPEA-LIGAGTVLNPEQLAQAIEA 86 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHHCCCC-EEEEeeccCHHHHHHHHHc
Confidence 3444444 45667888888888776532 1255 445556556899999999743 432 3333334456788899999
Q ss_pred CCcEEEeCC-CCHHHHHHH
Q 006774 128 GACDYLIKP-IREEELKNI 145 (632)
Q Consensus 128 GA~DYL~KP-~~~eeL~~~ 145 (632)
||+ |++-| ++. ++.+.
T Consensus 87 GA~-FivsP~~~~-~vi~~ 103 (212)
T PRK05718 87 GAQ-FIVSPGLTP-PLLKA 103 (212)
T ss_pred CCC-EEECCCCCH-HHHHH
Confidence 997 77777 555 55443
No 133
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=67.82 E-value=24 Score=39.89 Aligned_cols=100 Identities=9% Similarity=0.084 Sum_probs=54.8
Q ss_pred CCcEEEEEeCCHHH---HHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEec--CCC-CCCHHHHHHHH-hc-
Q 006774 32 AGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV--HMP-DMDGFKLLEHI-GL- 103 (632)
Q Consensus 32 ~glrVLIVDDd~~i---r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi--~MP-dmdGleLL~~L-r~- 103 (632)
.+.+|++++-|..- ...++...+..+..+..+.+..++.+.++.. .+|+||+|. .++ +.+-++-+..+ +.
T Consensus 251 ~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~--~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~ 328 (432)
T PRK12724 251 MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARD--GSELILIDTAGYSHRNLEQLERMQSFYSCF 328 (432)
T ss_pred cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhC--CCCEEEEeCCCCCccCHHHHHHHHHHHHhh
Confidence 46789999988622 2234444444466666666666777777643 589999996 121 11222222222 21
Q ss_pred ---cCCCcEEEEecCCCHHHHHHHHh----cCCcEEE
Q 006774 104 ---EMDLPVIMMSADGRVSAVMRGIR----HGACDYL 133 (632)
Q Consensus 104 ---~~~iPIIILSa~~d~e~~~eAl~----~GA~DYL 133 (632)
.+.-.++++++....+...++++ .|++..+
T Consensus 329 ~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glI 365 (432)
T PRK12724 329 GEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRIL 365 (432)
T ss_pred cCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 12234667777666655444442 4555554
No 134
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.65 E-value=25 Score=37.60 Aligned_cols=93 Identities=13% Similarity=0.090 Sum_probs=57.0
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006774 36 VLVVDDDITCLRILEQMLRR----CL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (632)
Q Consensus 36 VLIVDDd~~ir~~L~~lL~~----~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPI 109 (632)
|||=|.|-...-.+...+++ .. ...+.+.+.+++.+.+.. .+|+|++| +|.-.+--+.++.++....-..
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~---gaDiI~LD-nm~~e~vk~av~~~~~~~~~v~ 248 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE---GAELVLLD-NFPVWQTQEAVQRRDARAPTVL 248 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc---CCCEEEeC-CCCHHHHHHHHHHHhccCCCEE
Confidence 67766664443233333332 22 244578999999998853 38999999 4442222233333333333335
Q ss_pred EEEecCCCHHHHHHHHhcCCcEE
Q 006774 110 IMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DY 132 (632)
|..|+.-+.+.+.+..+.|+|.+
T Consensus 249 ieaSGGI~~~ni~~yA~tGvD~I 271 (289)
T PRK07896 249 LESSGGLTLDTAAAYAETGVDYL 271 (289)
T ss_pred EEEECCCCHHHHHHHHhcCCCEE
Confidence 66788888888888889998754
No 135
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=67.03 E-value=57 Score=29.74 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCCeEEE--EcCHHHHHHHHHHcCCCceEEEEecCCCCC-CHHHHHHHHhc-cCCCcEEEEecCCCHHH
Q 006774 45 CLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGL-EMDLPVIMMSADGRVSA 120 (632)
Q Consensus 45 ir~~L~~lL~~~gy~V~~--a~sg~eALe~L~e~~~~pDLVILDi~MPdm-dGleLL~~Lr~-~~~iPIIILSa~~d~e~ 120 (632)
-...+..+|++.++++.. ....++.++.+... ..||+|.+.+..... ...++++.+|+ .++++||+--.+.....
T Consensus 4 gl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p 82 (127)
T cd02068 4 GLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFP 82 (127)
T ss_pred hHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCH
Confidence 345677888887877653 33455566666542 259999999855543 35677888875 45666665433333222
Q ss_pred HHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 006774 121 VMRGIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 121 ~~eAl~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
...+.....||+.+---..-+...++.+
T Consensus 83 -~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 83 -EEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred -HHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 2224444557887754444555555544
No 136
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=66.81 E-value=39 Score=33.79 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=60.7
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---cCHHHHHHHHHHcCCCceEEEEecCCCCC-C-HHHHHHHHhcc
Q 006774 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM-D-GFKLLEHIGLE 104 (632)
Q Consensus 34 lrVLIV----DDd~~ir~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVILDi~MPdm-d-GleLL~~Lr~~ 104 (632)
-+|++. |.+..=...+..+|+..||+|+.. ...++.++.+.+.. ||+|.+.+.|... . -.++++.++..
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~--pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEK--PLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEccccccCHHHHHHHHHHHHHc
Confidence 356554 334555667788888899999743 35677778887765 9999999887642 2 24566667643
Q ss_pred --C-CCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 105 --M-DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 105 --~-~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+ +++|+ +.+..-.. .-+-+.|||.|-.
T Consensus 163 ~~~~~v~i~-vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 163 GYRDSVKFM-VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred CCCCCCEEE-EEChhcCH--HHHHHhCCcEEeC
Confidence 2 35544 44433222 2345679998864
No 137
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=66.38 E-value=48 Score=31.73 Aligned_cols=70 Identities=19% Similarity=0.148 Sum_probs=49.3
Q ss_pred EEcCHHHHHHHHHHcCCCceEEEEecCCCC--------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi~MPd--------mdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
.+.+..++.+.... .+|.|+++-..|. ..+++.+++++...++||++..+- +.+.+.++++.|++.+.
T Consensus 101 ~~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~ 176 (196)
T cd00564 101 STHSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAEVLAAGADGVA 176 (196)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 34566666665432 3899998755442 346788888876677899888765 45778888999999875
Q ss_pred eC
Q 006774 134 IK 135 (632)
Q Consensus 134 ~K 135 (632)
.=
T Consensus 177 ~g 178 (196)
T cd00564 177 VI 178 (196)
T ss_pred Ee
Confidence 54
No 138
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=66.06 E-value=19 Score=35.44 Aligned_cols=95 Identities=15% Similarity=0.084 Sum_probs=58.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----C--CC-eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006774 35 RVLVVDDDITCLRILEQMLRR----C--LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~----~--gy-~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~i 107 (632)
.|||-|.+-.....+...++. . .. -.+.+++.+++.+.+.. .+|+|.+|-.-| .+--++++.++....-
T Consensus 52 ~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~-~~~~~~v~~l~~~~~~ 127 (169)
T PF01729_consen 52 MILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLDNMSP-EDLKEAVEELRELNPR 127 (169)
T ss_dssp SEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEES-CH-HHHHHHHHHHHHHTTT
T ss_pred cEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEecCcCH-HHHHHHHHHHhhcCCc
Confidence 367776665554444444433 2 22 34578899999998874 389999995433 2333444444443333
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
..|..++.-+.+.+.+..+.|+|.+-
T Consensus 128 v~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 128 VKIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp SEEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred EEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 67778888888888888899987654
No 139
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=65.29 E-value=30 Score=39.06 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=36.7
Q ss_pred CCcEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcC--CCceEEEEec
Q 006774 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERK--GCFDVVLSDV 87 (632)
Q Consensus 32 ~glrVLIVDDd~~---ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~--~~pDLVILDi 87 (632)
.+.+|.+++-|+. ..+.++...+..++.+..+.+..+..+.+.... ..+|+||+|.
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 4678999998864 334445554556777777777766555554322 1489999996
No 140
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=65.28 E-value=31 Score=36.93 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=46.0
Q ss_pred CHHHHHHHHhccCCCcEE--EEecCCCHHHHHHHHhcCCcEEEe-----CCCCHHHHHHHHHHHHHhh
Q 006774 93 DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 93 dGleLL~~Lr~~~~iPII--ILSa~~d~e~~~eAl~~GA~DYL~-----KP~~~eeL~~~L~~vlr~~ 153 (632)
.+++++++++....+||| ...+-...+.+..+++.||+.++. |.-++.+....+..++..+
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~ 251 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHY 251 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence 478999998766679998 566666889999999999999854 4446777666666666553
No 141
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=65.09 E-value=2.5 Score=40.34 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhh----hhhhhcCCCccccccccccccccCcCccee
Q 006774 266 SHLQKFRLYLKRLN----GVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 266 SHLqRvr~ylk~L~----~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (632)
.|+.++..+.+.|- ..+...|. ++.+.+..++.||||||+..
T Consensus 3 ~H~~~v~~~a~~l~~~~~~~~~~~~~--~~~~~~~~~~~lHDiGK~~~ 48 (177)
T TIGR01596 3 EHLLDVAAVAEKLKNLDIVIADLIGK--LLRELLDLLALLHDIGKINP 48 (177)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHhh--HHHHHHHHHHHHccCccCCH
Confidence 57777766666531 11444443 35667788889999999975
No 142
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=64.79 E-value=34 Score=36.54 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=61.7
Q ss_pred EEEcCHHHHHHHHHHcCCCceEEEEec---------------------------------CC--CCCCHHHHHHHHhccC
Q 006774 61 TTCSQAAVALDILRERKGCFDVVLSDV---------------------------------HM--PDMDGFKLLEHIGLEM 105 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi---------------------------------~M--PdmdGleLL~~Lr~~~ 105 (632)
--|.+.+||+...+. .+|+|=+=+ .. ....++++++++....
T Consensus 117 AD~stleEal~a~~~---Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~ 193 (283)
T cd04727 117 CGARNLGEALRRISE---GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG 193 (283)
T ss_pred ccCCCHHHHHHHHHC---CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc
Confidence 357788888887764 378776554 00 1234788999997666
Q ss_pred CCcEE--EEecCCCHHHHHHHHhcCCcEEEeCC-----CCHHHHHHHHHHHHHh
Q 006774 106 DLPVI--MMSADGRVSAVMRGIRHGACDYLIKP-----IREEELKNIWQHVVRK 152 (632)
Q Consensus 106 ~iPII--ILSa~~d~e~~~eAl~~GA~DYL~KP-----~~~eeL~~~L~~vlr~ 152 (632)
.+||| ...+-...+.+.++++.||+.++.=. -++.+....+...+.+
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 79997 66666688999999999999986543 3456655556555544
No 143
>PRK14974 cell division protein FtsY; Provisional
Probab=64.58 E-value=35 Score=37.24 Aligned_cols=101 Identities=22% Similarity=0.229 Sum_probs=52.0
Q ss_pred CCcEEEEEeCCH---HHHHHHHHHHHhCCCeEEEEcCH-------HHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH
Q 006774 32 AGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCSQA-------AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 32 ~glrVLIVDDd~---~ir~~L~~lL~~~gy~V~~a~sg-------~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~L 101 (632)
.+.+|++++-|. ...+.++......+..+.....+ .++++.++.. .+|+||+|.-=-...-.+++..|
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~--~~DvVLIDTaGr~~~~~~lm~eL 244 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKAR--GIDVVLIDTAGRMHTDANLMDEL 244 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhC--CCCEEEEECCCccCCcHHHHHHH
Confidence 457899998773 33445555556666655433321 2444444433 48999999641111123344443
Q ss_pred h-----ccCCCcEEEEecCCCHHHHH--HHH--hcCCcEEEe
Q 006774 102 G-----LEMDLPVIMMSADGRVSAVM--RGI--RHGACDYLI 134 (632)
Q Consensus 102 r-----~~~~iPIIILSa~~d~e~~~--eAl--~~GA~DYL~ 134 (632)
+ ..++..++++.+....+... +.+ ..+++.++.
T Consensus 245 ~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIl 286 (336)
T PRK14974 245 KKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL 286 (336)
T ss_pred HHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEE
Confidence 2 23555566666544433332 222 246666543
No 144
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=63.84 E-value=83 Score=31.68 Aligned_cols=67 Identities=15% Similarity=0.298 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCCce-EEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 66 AAVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 66 g~eALe~L~e~~~~pD-LVILDi~MPdm-dG--leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
..+..+.+.+. .++ +++.|+.-.++ .| ++++++++...++|+|+-.+-.+.+.+.++++.||++++.
T Consensus 147 ~~~~~~~~~~~--g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 147 LEELAKRLEEL--GLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred HHHHHHHHHhC--CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 34445545443 266 77788755432 22 6888888766789999888888888898989999999875
No 145
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=63.41 E-value=3.1 Score=36.35 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCccee
Q 006774 264 VASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 264 taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (632)
...|..++..++..+ +.....++...+.+..|+-|||+||...
T Consensus 3 ~~~Hs~~v~~~~~~~---~~~~~~~~~~~~~l~~aaLlHDig~~~~ 45 (145)
T cd00077 3 RFEHSLRVAQLARRL---AEELGLSEEDIELLRLAALLHDIGKPGT 45 (145)
T ss_pred hHHHHHHHHHHHHHH---HHHhCcCHHHHHHHHHHHHHHhcCCccC
Confidence 457888888888888 6665555555677888899999999864
No 146
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=62.95 E-value=31 Score=38.78 Aligned_cols=92 Identities=14% Similarity=0.078 Sum_probs=52.1
Q ss_pred CCcEEEEEeCCHHH---HHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCC--C-CCCHHHHHHHH-h-c
Q 006774 32 AGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM--P-DMDGFKLLEHI-G-L 103 (632)
Q Consensus 32 ~glrVLIVDDd~~i---r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~M--P-dmdGleLL~~L-r-~ 103 (632)
.+.+|.+|+-|+.- .+.++.+-+..+..+..+.+..+....+.... .+|+||+|.-- + +....+.+..+ + .
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~ 328 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-DCDVILIDTAGRSQRDKRLIEELKALIEFS 328 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-CCCEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence 45799999998742 23344444445666777777777666666543 58999999631 1 11223333333 3 2
Q ss_pred cCCC-cEEEEecCCCHHHHHHH
Q 006774 104 EMDL-PVIMMSADGRVSAVMRG 124 (632)
Q Consensus 104 ~~~i-PIIILSa~~d~e~~~eA 124 (632)
...+ .++++++........++
T Consensus 329 ~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 329 GEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred CCCCeEEEEEECCCCHHHHHHH
Confidence 1222 35667766655444443
No 147
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=62.91 E-value=31 Score=34.92 Aligned_cols=84 Identities=20% Similarity=0.214 Sum_probs=54.2
Q ss_pred HHHHHHHcCC-----CCCCCcccccccCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEEcCHHHHHHHHHH
Q 006774 4 LQRIVQSSGG-----SGYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRE 75 (632)
Q Consensus 4 ~~~lv~~~GG-----~G~gs~~~~~~~~p~~~p~glrVLIVDDd~~ir~~L~~lL~~~gy--~V-~~a~sg~eALe~L~e 75 (632)
++.|+.+.+- -|.+.+++.--.. ...|.+-+|.-||-++...+..+..++..++ .| ....++.+.+..+..
T Consensus 37 L~~l~~~~~~k~vLEIGt~~GySal~la-~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~ 115 (205)
T PF01596_consen 37 LQMLVRLTRPKRVLEIGTFTGYSALWLA-EALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN 115 (205)
T ss_dssp HHHHHHHHT-SEEEEESTTTSHHHHHHH-HTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEeccccccHHHHHH-HhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh
Confidence 4555665554 2444444322111 1223456999999999999999999998775 33 356778888877654
Q ss_pred cC--CCceEEEEecC
Q 006774 76 RK--GCFDVVLSDVH 88 (632)
Q Consensus 76 ~~--~~pDLVILDi~ 88 (632)
.. ..||+||+|..
T Consensus 116 ~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 116 DGEEGQFDFVFIDAD 130 (205)
T ss_dssp TTTTTSEEEEEEEST
T ss_pred ccCCCceeEEEEccc
Confidence 32 36999999974
No 148
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=62.71 E-value=29 Score=34.36 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=45.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCH-HHHHHHHh
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYN---VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG-FKLLEHIG 102 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~---V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdG-leLL~~Lr 102 (632)
-+|..||-++.....+++.++..+.. .+...+...++..+......+|+|++|-=-..... .++++.|.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHH
Confidence 47999999999999999999987632 34567878887766444456999999931112222 45677764
No 149
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=62.14 E-value=1.1e+02 Score=30.75 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=52.7
Q ss_pred HHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHH
Q 006774 53 LRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRG 124 (632)
Q Consensus 53 L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPd-------mdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eA 124 (632)
++..+..+. .+.+.+++..+. +. ..|.|+++-.-.+ ...++++++++...++||++.-+-...+.+.++
T Consensus 98 ~~~~~i~~i~~v~~~~~~~~~~-~~--gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~ 174 (236)
T cd04730 98 LKAAGIKVIPTVTSVEEARKAE-AA--GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAA 174 (236)
T ss_pred HHHcCCEEEEeCCCHHHHHHHH-Hc--CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHH
Confidence 333344433 445556655443 33 3788887643211 245778888876667999988877777888999
Q ss_pred HhcCCcEEEeC
Q 006774 125 IRHGACDYLIK 135 (632)
Q Consensus 125 l~~GA~DYL~K 135 (632)
+..|+++...-
T Consensus 175 l~~GadgV~vg 185 (236)
T cd04730 175 LALGADGVQMG 185 (236)
T ss_pred HHcCCcEEEEc
Confidence 99999988765
No 150
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.00 E-value=32 Score=36.49 Aligned_cols=96 Identities=10% Similarity=0.131 Sum_probs=57.1
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC---eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006774 35 RVLVVDDDITCLRILEQMLR----RCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~----~~gy---~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~i 107 (632)
.|||=|.|-.....+...++ ...+ -.+.+.+.++|++.+.. .+|+|.+|- |.-.+--++++.++....-
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn-~~~e~l~~~v~~~~~~~~~ 229 (273)
T PRK05848 154 CLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDN-MSVEEIKEVVAYRNANYPH 229 (273)
T ss_pred hhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHHhhccCCC
Confidence 36666666544444444443 2332 23578899999998864 389999884 2111112222222221112
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
..|..++.-+.+.+.+..+.|+|.+.+
T Consensus 230 ~~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 230 VLLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred eEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 256677777888999999999986543
No 151
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=61.97 E-value=13 Score=37.53 Aligned_cols=76 Identities=18% Similarity=0.297 Sum_probs=52.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecC--CCCCCH--HHHHHHHhccCCCcE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDG--FKLLEHIGLEMDLPV 109 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~--MPdmdG--leLL~~Lr~~~~iPI 109 (632)
++||+||....+--.|..+|+..+.++....+....++.++.. .||.|++.-- -|...| .++++++ ...+||
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~--~pd~iviSPGPG~P~d~G~~~~~i~~~--~~~~Pi 77 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEAL--KPDAIVISPGPGTPKDAGISLELIRRF--AGRIPI 77 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhc--CCCEEEEcCCCCChHHcchHHHHHHHh--cCCCCE
Confidence 6899999999999999999999998887776653333344443 3899999742 222223 4555554 356888
Q ss_pred EEEe
Q 006774 110 IMMS 113 (632)
Q Consensus 110 IILS 113 (632)
+=+.
T Consensus 78 LGVC 81 (191)
T COG0512 78 LGVC 81 (191)
T ss_pred EEEC
Confidence 8665
No 152
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=60.76 E-value=35 Score=35.16 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=40.6
Q ss_pred HHHHHHHHhccCCCcEEEEecCCC------HHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 006774 94 GFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 94 GleLL~~Lr~~~~iPIIILSa~~d------~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
++++++.+|...++|+++++-... .....++.++|+++.+.-.+..+++...++.+
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 566777777656889888876443 55577788999999998667777776666554
No 153
>PLN02591 tryptophan synthase
Probab=59.79 E-value=31 Score=36.10 Aligned_cols=58 Identities=9% Similarity=0.180 Sum_probs=44.4
Q ss_pred CHHHHHHHHhccCCCcEEEEecCCC------HHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 006774 93 DGFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 93 dGleLL~~Lr~~~~iPIIILSa~~d------~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
+.+++++++|...++|+|+|+-... .....++.++|+++.|.-.+..+|.......+.
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 4578888888667899998885442 344667789999999999899888877666653
No 154
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=59.36 E-value=80 Score=33.91 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=59.2
Q ss_pred HHHHHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCC-----CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHH
Q 006774 50 EQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (632)
Q Consensus 50 ~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MP-----dmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~e 123 (632)
-..++..+..|. .+.+.++|..+.+. .+|.|++.-.-. ...-++++++++...++|||.--+-.+...+..
T Consensus 102 i~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~ 178 (307)
T TIGR03151 102 IPRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAA 178 (307)
T ss_pred HHHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHH
Confidence 344455565543 56778887666543 389988854321 223588888887666799998888888888999
Q ss_pred HHhcCCcEEEeCC
Q 006774 124 GIRHGACDYLIKP 136 (632)
Q Consensus 124 Al~~GA~DYL~KP 136 (632)
++..||++...=.
T Consensus 179 al~~GA~gV~iGt 191 (307)
T TIGR03151 179 AFALGAEAVQMGT 191 (307)
T ss_pred HHHcCCCEeecch
Confidence 9999999887653
No 155
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=57.37 E-value=1.2e+02 Score=34.75 Aligned_cols=107 Identities=13% Similarity=0.118 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhCC-CeEEEEc------CHHHHHHHHHHcCCCceEEEEecCCCCCC-HHHHHHHHhc-cCCCcEEEE
Q 006774 42 DITCLRILEQMLRRCL-YNVTTCS------QAAVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 42 d~~ir~~L~~lL~~~g-y~V~~a~------sg~eALe~L~e~~~~pDLVILDi~MPdmd-GleLL~~Lr~-~~~iPIIIL 112 (632)
.|.-...+...|+..| ++|.... +.++..+.+++. .||+|.+...-+... ..++++.+|+ .++++||+=
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~--~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G 98 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAH--CPDLVLITAITPAIYIACETLKFARERLPNAIIVLG 98 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhc--CcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4666778888898888 5775543 233444555554 499999987655433 4567777764 567777654
Q ss_pred ecCCCHHHHHHHHh-cCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 113 SADGRVSAVMRGIR-HGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 113 Sa~~d~e~~~eAl~-~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
-.+.... ..++++ ....||+..=-...-+.+.++.+..
T Consensus 99 G~h~t~~-~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~ 137 (497)
T TIGR02026 99 GIHPTFM-FHQVLTEAPWIDFIVRGEGEETVVKLIAALEN 137 (497)
T ss_pred CCCcCcC-HHHHHhcCCCccEEEeCCcHHHHHHHHHHHHc
Confidence 4343332 234553 4556788887666666666666543
No 156
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=57.37 E-value=5 Score=38.51 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCcc
Q 006774 262 ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 262 e~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
+..-.|..+++..++.| |+..|.+.+ ....|..||||||+
T Consensus 7 ~~r~~Hsl~Va~~a~~l---A~~~~~d~e---~a~~AGLLHDIGk~ 46 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQL---AEANKLDSK---KAEIAGAYHDLAKF 46 (158)
T ss_pred hHHHHHHHHHHHHHHHH---HHHhCcCHH---HHHHHHHHHHHhcc
Confidence 45678999999999999 888887654 45667889999995
No 157
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=56.95 E-value=1e+02 Score=30.73 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=59.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEc-------CHHHHHHHHHHcCCCceEEEEecCC-C-CCCHHHHHHHHhccCC
Q 006774 36 VLVVDDDITCLRILEQMLRRCLYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHM-P-DMDGFKLLEHIGLEMD 106 (632)
Q Consensus 36 VLIVDDd~~ir~~L~~lL~~~gy~V~~a~-------sg~eALe~L~e~~~~pDLVILDi~M-P-dmdGleLL~~Lr~~~~ 106 (632)
|||-|-|...++.++..-++.|-++++.+ ++++.++++.+.+++|-+|++|-.= . ...|-+.++.+-.+++
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 56667778888888888888888887644 7889999999888788888888542 2 2457788888877777
Q ss_pred Cc---EEEEecC
Q 006774 107 LP---VIMMSAD 115 (632)
Q Consensus 107 iP---IIILSa~ 115 (632)
+- +|.+++.
T Consensus 83 IeVLG~iAVASn 94 (180)
T PF14097_consen 83 IEVLGAIAVASN 94 (180)
T ss_pred ceEEEEEEEEec
Confidence 65 4445443
No 158
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.94 E-value=55 Score=36.71 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=37.2
Q ss_pred CCcEEEEEeCCHHH---HHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcC--CCceEEEEecC
Q 006774 32 AGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERK--GCFDVVLSDVH 88 (632)
Q Consensus 32 ~glrVLIVDDd~~i---r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~--~~pDLVILDi~ 88 (632)
.+.+|.+|+-|+.- .+.++.+-+..+..+..+.+..+..+.+.... ..+|+||+|.-
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTA 294 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTV 294 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 35789999988642 34555555555666666777776655554321 24899999963
No 159
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=56.82 E-value=1.9e+02 Score=31.64 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=72.8
Q ss_pred CcEEEEEeCCHHHHH-------HHHHHHHhCCCeE--EEEcCHHHHHHHHHHcCCCceEEEEecCCC-----CCCHHHHH
Q 006774 33 GLRVLVVDDDITCLR-------ILEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLL 98 (632)
Q Consensus 33 glrVLIVDDd~~ir~-------~L~~lL~~~gy~V--~~a~sg~eALe~L~e~~~~pDLVILDi~MP-----dmdGleLL 98 (632)
.+|+=|+.|+..... ..+.++ +.||.| .++.+...|.++..- . + +.++=+--| +..-.+.+
T Consensus 167 ~iKlEvi~e~~~llpd~~~~v~aa~~L~-~~Gf~v~~yc~~d~~~a~~l~~~-g--~-~avmPl~~pIGsg~gv~~p~~i 241 (326)
T PRK11840 167 LVKLEVLGDAKTLYPDMVETLKATEILV-KEGFQVMVYCSDDPIAAKRLEDA-G--A-VAVMPLGAPIGSGLGIQNPYTI 241 (326)
T ss_pred eEEEEEcCCCCCcccCHHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHhc-C--C-EEEeeccccccCCCCCCCHHHH
Confidence 356666666544333 333333 337877 455666666665443 2 3 333332222 12234667
Q ss_pred HHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe-----CCCCHHHHHHHHHHHHH
Q 006774 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (632)
Q Consensus 99 ~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~-----KP~~~eeL~~~L~~vlr 151 (632)
+.+...+++|||+=.+-...+.+..|++.|+++.|. |--++-.+.++++.+++
T Consensus 242 ~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 242 RLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred HHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 777666789999988889999999999999999854 55677788888887765
No 160
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=56.73 E-value=2e+02 Score=31.99 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=64.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH-hccCCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~-V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~L-r~~~~iPII 110 (632)
-+|+.+|-++...+.++.-++..+.. + ....+....+ ......||+|++|- ++.. .+++..+ +....-.++
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l---~~~~~~fDvIdlDP--fGs~-~~fld~al~~~~~~glL 143 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVL---RYRNRKFHVIDIDP--FGTP-APFVDSAIQASAERGLL 143 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHH---HHhCCCCCEEEeCC--CCCc-HHHHHHHHHhcccCCEE
Confidence 47999999999999999988766543 2 2334444443 33223599999996 3322 2444433 333344577
Q ss_pred EEecCCCHHH----HHHHH-hcCCcEEEeCC--CCHHHHHHHHHHHHHh
Q 006774 111 MMSADGRVSA----VMRGI-RHGACDYLIKP--IREEELKNIWQHVVRK 152 (632)
Q Consensus 111 ILSa~~d~e~----~~eAl-~~GA~DYL~KP--~~~eeL~~~L~~vlr~ 152 (632)
.+|+.+.... ...++ ++|+.- .|. ....-|+-.+..+.|.
T Consensus 144 ~vTaTD~~~L~G~~~~~~~rkYga~~--~~~~~~~E~glRiLlg~i~r~ 190 (374)
T TIGR00308 144 LVTATDTSALCGNYPKSCLRKYGANP--VKTESCHESALRLLLGFVKRT 190 (374)
T ss_pred EEEecccHHhcCCChHHHHHHhCCcc--cCCcchHHHHHHHHHHHHHHH
Confidence 8886554432 34455 677653 343 3334455555555543
No 161
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=55.81 E-value=39 Score=35.46 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=43.1
Q ss_pred CHHHHHHHHh-ccCCCcEEEEecCC------CHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 006774 93 DGFKLLEHIG-LEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 93 dGleLL~~Lr-~~~~iPIIILSa~~------d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
+.+++++++| ..+++|+|+++-.. -.....++.++|+++.|.-.+..++....+..+
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 3577788887 55789999888443 334577788999999999778888887766655
No 162
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.62 E-value=80 Score=32.09 Aligned_cols=60 Identities=8% Similarity=0.194 Sum_probs=36.5
Q ss_pred EEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHH
Q 006774 84 LSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKN 144 (632)
Q Consensus 84 ILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~ 144 (632)
++.+.|-.-+.++.+++++....--+|=.-.--+.+.+.+++++||. |+.-|.-..++.+
T Consensus 32 ~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~vi~ 91 (201)
T PRK06015 32 AIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQELLA 91 (201)
T ss_pred EEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHH
Confidence 45555556667888888754322112223334567788899999997 7777755455443
No 163
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=54.42 E-value=46 Score=34.79 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=43.0
Q ss_pred CHHHHHHHHhcc-CCCcEEEEecCCC------HHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 006774 93 DGFKLLEHIGLE-MDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 93 dGleLL~~Lr~~-~~iPIIILSa~~d------~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
+.+++++.+|.. .++|+++++-... .....++.++|+++.+.-.+..++....+..+
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 357778888755 6899887776554 56677888999999999888888776655554
No 164
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=54.01 E-value=41 Score=35.91 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=57.4
Q ss_pred EEEEeCCHHHH-------HHHHHHHHhCC--CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCC
Q 006774 36 VLVVDDDITCL-------RILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (632)
Q Consensus 36 VLIVDDd~~ir-------~~L~~lL~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~ 106 (632)
|||-|.|-... ..++.+=+..+ ...+.+.+.++|.+.+.. .+|+|++| +|...+--++++.++....
T Consensus 160 vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~a---gaDiI~LD-n~~~e~l~~av~~~~~~~~ 235 (284)
T PRK06096 160 ILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRA---QPDVLQLD-KFSPQQATEIAQIAPSLAP 235 (284)
T ss_pred hhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CCCEEEEC-CCCHHHHHHHHHHhhccCC
Confidence 66666665433 23333222222 234578899999999864 38999999 4443333344444432222
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
-.++-.++.-+.+.+.+....|+|-+.
T Consensus 236 ~~~leaSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 236 HCTLSLAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred CeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 235667888888888888889987543
No 165
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=53.57 E-value=14 Score=35.16 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006774 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (632)
Q Consensus 66 g~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~ 115 (632)
..++++.++.. .+|+||+|. ++..- .....+ ...+..||+++..
T Consensus 80 ~~~~~~~~~~~--~~D~iiIDt--aG~~~-~~~~~~-~~Ad~~ivv~tpe 123 (148)
T cd03114 80 TPEVIRVLDAA--GFDVIIVET--VGVGQ-SEVDIA-SMADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHHhc--CCCEEEEEC--CccCh-hhhhHH-HhCCEEEEEECCC
Confidence 34566666543 599999998 55432 222222 2345566666655
No 166
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=53.20 E-value=7.2 Score=33.37 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCccee
Q 006774 262 ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 262 e~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (632)
++...|..++..++..+ +.+.+. ...+.+..++-|||+||...
T Consensus 3 ~~~~~H~~~v~~~~~~l---~~~~~~--~~~~~~~~a~LlHDig~~~~ 45 (124)
T smart00471 3 YHVFEHSLRVAQLAAAL---AEELGL--LDIELLLLAALLHDIGKPGT 45 (124)
T ss_pred chHHHHHHHHHHHHHHH---HHHcCh--HHHHHHHHHHHHHcccCccC
Confidence 35678888998888888 776664 23345677889999999965
No 167
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=52.90 E-value=54 Score=34.69 Aligned_cols=113 Identities=13% Similarity=0.156 Sum_probs=67.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEEEe
Q 006774 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMMS 113 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr-~~~~iPIIILS 113 (632)
.|-+.=.++.....+..+|....|.+..+.+.++.++.+..+++.+|.+|+.... .-..+..++. ...-+|+|++.
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~---~~~~~~~~L~e~g~LLPaVil~ 78 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSP---LLPPLFNQLYEQGILLPAVILG 78 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTS---TTHHHHHHHHHCT----EEEES
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCC---CcHHHHHHHHHcCccccEEEEe
Confidence 3455556778888999999888899999999999999999887889999998754 3456777775 34568999886
Q ss_pred cCCCHHHHHHHHhcCCcEE-----EeCCCCHHHHHHHHHHHHHhh
Q 006774 114 ADGRVSAVMRGIRHGACDY-----LIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DY-----L~KP~~~eeL~~~L~~vlr~~ 153 (632)
........ -..|..+| -.+.-..++|-..|.+++.+.
T Consensus 79 ~~~s~~~~---~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsrF 120 (283)
T PF07688_consen 79 SSESASTT---SESGTVLYHSAEVHLPIDQLEQLSYNIDQAISRF 120 (283)
T ss_dssp ---S--TT---S--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHHH
T ss_pred cCcccccC---CCCCceeeehHheEccHHHHHHHHHHHHHHHHHH
Confidence 53221100 01333333 344444566666666665443
No 168
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=52.57 E-value=83 Score=27.98 Aligned_cols=71 Identities=20% Similarity=0.125 Sum_probs=48.1
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEEc---CHHHHHHHHHHcCCCceEEEEecCCCCC-CHHHHHHHHh-ccC-CCcEEEE
Q 006774 40 DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIG-LEM-DLPVIMM 112 (632)
Q Consensus 40 DDd~~ir~~L~~lL~~~gy~V~~a~---sg~eALe~L~e~~~~pDLVILDi~MPdm-dGleLL~~Lr-~~~-~iPIIIL 112 (632)
|.++.-...+..+++..|+++.... ..++..+.+.+. .||+|.+...+... ..++.+..++ ..+ +++|++=
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~--~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvG 86 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEE--DADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHc--CCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEe
Confidence 5556667778888999999987543 556666767664 49999999877653 2455555654 344 5666654
No 169
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=52.19 E-value=42 Score=34.58 Aligned_cols=85 Identities=22% Similarity=0.254 Sum_probs=52.5
Q ss_pred HHHHHHHcCC-----CCCCCcccccccCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCe--EEEEcCHHHHHHHHHH-
Q 006774 4 LQRIVQSSGG-----SGYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRE- 75 (632)
Q Consensus 4 ~~~lv~~~GG-----~G~gs~~~~~~~~p~~~p~glrVLIVDDd~~ir~~L~~lL~~~gy~--V~~a~sg~eALe~L~e- 75 (632)
.+-|+++.|. -|.+.+++.-..... .|..-++.-||-++...+.-++.+++.|+. +..... -+|++.+..
T Consensus 51 L~~L~~~~~~k~iLEiGT~~GySal~mA~~-l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~ 128 (219)
T COG4122 51 LRLLARLSGPKRILEIGTAIGYSALWMALA-LPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRL 128 (219)
T ss_pred HHHHHHhcCCceEEEeecccCHHHHHHHhh-CCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhc
Confidence 3455666665 255555533322211 122348999999999999999999988753 333331 344555543
Q ss_pred cCCCceEEEEecCCC
Q 006774 76 RKGCFDVVLSDVHMP 90 (632)
Q Consensus 76 ~~~~pDLVILDi~MP 90 (632)
....||+||+|..-+
T Consensus 129 ~~~~fDliFIDadK~ 143 (219)
T COG4122 129 LDGSFDLVFIDADKA 143 (219)
T ss_pred cCCCccEEEEeCChh
Confidence 234699999997544
No 170
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=52.05 E-value=1.2e+02 Score=30.80 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=48.6
Q ss_pred eEEEEcCHHHHHHHHHHc-CCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 59 NVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 59 ~V~~a~sg~eALe~L~e~-~~~pDLVILDi~MPdmdGleLL~~Lr~~-~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
-|....+.+++++..+.. ...+.++ .+.|-..+.++.+++++.. +++. |=.-.--+.+.+.+++++||+ |+.-|
T Consensus 12 aVlr~~~~e~a~~~~~al~~~Gi~~i--Eit~~t~~a~~~i~~l~~~~~~~~-vGAGTVl~~~~a~~a~~aGA~-FivsP 87 (204)
T TIGR01182 12 PVIRIDDVDDALPLAKALIEGGLRVL--EVTLRTPVALDAIRLLRKEVPDAL-IGAGTVLNPEQLRQAVDAGAQ-FIVSP 87 (204)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCEE--EEeCCCccHHHHHHHHHHHCCCCE-EEEEeCCCHHHHHHHHHcCCC-EEECC
Confidence 455666677776655432 1224543 4444455688888888643 3322 223334567788899999997 67777
Q ss_pred CCHHHHHH
Q 006774 137 IREEELKN 144 (632)
Q Consensus 137 ~~~eeL~~ 144 (632)
....++.+
T Consensus 88 ~~~~~v~~ 95 (204)
T TIGR01182 88 GLTPELAK 95 (204)
T ss_pred CCCHHHHH
Confidence 54444443
No 171
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=51.46 E-value=1.1e+02 Score=29.96 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=49.1
Q ss_pred EEEcCHHHHHHHHHHcCCCceEEEEecCCCC--------CCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCcE
Q 006774 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACD 131 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~MPd--------mdGleLL~~Lr~-~~~iPIIILSa~~d~e~~~eAl~~GA~D 131 (632)
.++.+.+++.+..+ . .+|.|.++-..+. ..|++.++++.. .+++||+++.+- +.+.+.++++.|+++
T Consensus 101 ~s~h~~~e~~~a~~-~--g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~g 176 (196)
T TIGR00693 101 VSTHNLEELAEAEA-E--GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADG 176 (196)
T ss_pred EeCCCHHHHHHHhH-c--CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCE
Confidence 46777777766443 2 4899998765542 237888888854 346898887655 567788888999988
Q ss_pred EEe
Q 006774 132 YLI 134 (632)
Q Consensus 132 YL~ 134 (632)
+..
T Consensus 177 va~ 179 (196)
T TIGR00693 177 VAV 179 (196)
T ss_pred EEE
Confidence 754
No 172
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=51.17 E-value=1.4e+02 Score=32.64 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=54.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe---------------EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHH
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYN---------------VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKL 97 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~---------------V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleL 97 (632)
.++++||-+.+.-...+++.++..+.. |.......+...++.. -|++++--...+.-|..+
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~----aDi~~v~~S~~e~~g~~~ 337 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAI----ADIAFVGGSLVKRGGHNP 337 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHh----CCEEEECCCcCCCCCCCH
Confidence 356666666665445566666554432 2222222333333321 466555222212234344
Q ss_pred HHHHhccCCCcEEEEecCCCHHHHHHHH-hcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 98 LEHIGLEMDLPVIMMSADGRVSAVMRGI-RHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 98 L~~Lr~~~~iPIIILSa~~d~e~~~eAl-~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
++.+. ..+|||.--...+.....+.+ +. +++..|-+.++|...+..++.
T Consensus 338 lEAma--~G~PVI~g~~~~~~~e~~~~~~~~---g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 338 LEPAA--FGVPVISGPHTFNFKEIFERLLQA---GAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHH--hCCCEEECCCccCHHHHHHHHHHC---CCeEEECCHHHHHHHHHHHhc
Confidence 44442 467887532223333333333 33 456667889999988888764
No 173
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.10 E-value=64 Score=34.53 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=56.5
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC--Ce-EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCC
Q 006774 35 RVLVVDDDITCLRILEQMLR----RCL--YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~----~~g--y~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~ 106 (632)
-|||-|.|-.....+...+. ..+ .. .+.+.+.+||.+.+.. .+|+|.+| +|.-.+--+.++.++. .+.
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LD-n~~~e~l~~av~~~~~~~~~ 243 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLD-NMPVDLMQQAVQLIRQQNPR 243 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEEC-CCCHHHHHHHHHHHHhcCCC
Confidence 47777776544433444443 233 22 3478899999998853 48999999 3322222223333332 344
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
++ +..++--+.+.+.+....|++..-
T Consensus 244 i~-leAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 244 VK-IEASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred eE-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 54 445666678888888899998653
No 174
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=50.86 E-value=63 Score=34.21 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=34.0
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEcCHHHHHHH---HHHcCCCceEEEEecC
Q 006774 33 GLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDI---LRERKGCFDVVLSDVH 88 (632)
Q Consensus 33 glrVLIVDDd~~---ir~~L~~lL~~~gy~V~~a~sg~eALe~---L~e~~~~pDLVILDi~ 88 (632)
+.+|.+++-|.. ....++...+..++.+..+.+..+..+. +... ..+|+||+|.-
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt~ 163 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDTA 163 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEECC
Confidence 457888877653 3444555555567887776666544333 3332 25899999963
No 175
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=50.78 E-value=62 Score=24.62 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=35.0
Q ss_pred ccchHHHHHHHHHHHHHhccccccHHHHHHHhcCCCcChHHHHHHHHHH
Q 006774 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKF 271 (632)
Q Consensus 223 v~wt~eLh~~Fl~av~~LgidkA~pK~ILelM~v~gltre~taSHLqRv 271 (632)
..|+.+-+..|.+++...|.+ .-+.|...|. .+-|..++.+|-+++
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhh
Confidence 469999999999999999966 3467777766 466777888887665
No 176
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=50.74 E-value=51 Score=34.71 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=43.5
Q ss_pred CHHHHHHHHhccCCCcEEEEecCC------CHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 006774 93 DGFKLLEHIGLEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 93 dGleLL~~Lr~~~~iPIIILSa~~------d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
+.+++++++|....+|+|++|-.. -.....++.++|+++.+.-.+..+|....+..+
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 357888888866789998888653 244577888999999999888888876655554
No 177
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=50.69 E-value=68 Score=33.79 Aligned_cols=55 Identities=29% Similarity=0.334 Sum_probs=31.9
Q ss_pred CCcEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEc---CH-H---HHHHHHHHcCCCceEEEEecC
Q 006774 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QA-A---VALDILRERKGCFDVVLSDVH 88 (632)
Q Consensus 32 ~glrVLIVDDd~~---ir~~L~~lL~~~gy~V~~a~---sg-~---eALe~L~e~~~~pDLVILDi~ 88 (632)
.+.+|++||-|.. ..+.++.+.+..+..+.... +. . ++++.+... .+|+||+|.-
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~--~~D~ViIDT~ 163 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKAR--NIDVVLIDTA 163 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHC--CCCEEEEeCC
Confidence 4679999998853 23445555566665554332 22 2 233333333 4999999963
No 178
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=50.45 E-value=80 Score=32.34 Aligned_cols=56 Identities=23% Similarity=0.266 Sum_probs=41.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEEcCHHHHHHHHHHc--CCCceEEEEecC
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRER--KGCFDVVLSDVH 88 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~--V-~~a~sg~eALe~L~e~--~~~pDLVILDi~ 88 (632)
.-+|.-+|-++...+..++.++..++. + ....++.+.+..+... ...||+|++|..
T Consensus 93 ~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 93 DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 348999999999999999999887653 3 2456677777665432 236999999964
No 179
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=49.86 E-value=1.3e+02 Score=34.57 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=55.9
Q ss_pred CCcEEEEEeC----CHHHHHHHHHHHHhC-CCeEE--EEcCHHHHHHHHHHcCCCceEEEEecC--------------CC
Q 006774 32 AGLRVLVVDD----DITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVH--------------MP 90 (632)
Q Consensus 32 ~glrVLIVDD----d~~ir~~L~~lL~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~--------------MP 90 (632)
++..+++||- .....+.++.+-+.+ ...+. .+.+.++|..++.. ..|.|.+.+. .|
T Consensus 252 ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~a---Gad~I~vg~g~Gs~~~t~~~~~~g~p 328 (495)
T PTZ00314 252 AGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDA---GADGLRIGMGSGSICITQEVCAVGRP 328 (495)
T ss_pred CCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHc---CCCEEEECCcCCcccccchhccCCCC
Confidence 3566777764 233333444433332 22332 35566666666543 3677765431 22
Q ss_pred CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 91 DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 91 dmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
....+.-+.++....++|||.=.+-.....+.+|+.+||+..+.=.
T Consensus 329 ~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~ 374 (495)
T PTZ00314 329 QASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGS 374 (495)
T ss_pred hHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECc
Confidence 2222111222223356888876677788889999999999887653
No 180
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=49.63 E-value=1.9e+02 Score=32.31 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=62.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIIL 112 (632)
.++++||.|.+. ++.++.+.+.....+.-.-..++..+++.. .|++++=.. .+.-|+-+++.+. ..+|||..
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA--~G~PVI~s 361 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA--SGVPVVAA 361 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH--cCCCEEEc
Confidence 467777776653 344555544332222223334555555543 477665322 2233555666653 46888854
Q ss_pred ecCCCHHHHHHHHhc---CCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 113 SADGRVSAVMRGIRH---GACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~---GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.. .. ..+.++. |-.+++..|-+.++|...+..++.
T Consensus 362 ~~-gg---~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 362 RA-GG---IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred CC-CC---cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 32 22 2344555 889999999999999999988764
No 181
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=49.18 E-value=3.2e+02 Score=28.54 Aligned_cols=87 Identities=16% Similarity=0.054 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhCCCeE-EEEcCHHHHHHHHHHcCCCceEEEEec-C--CCCCCHHHHHHHHh-ccC-CCcEEEEecCCCH
Q 006774 45 CLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV-H--MPDMDGFKLLEHIG-LEM-DLPVIMMSADGRV 118 (632)
Q Consensus 45 ir~~L~~lL~~~gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi-~--MPdmdGleLL~~Lr-~~~-~iPIIILSa~~d~ 118 (632)
....+.......|.++ ..+.+.+|+...... .+|+|-+.- + ....+ ++...++. ..+ ..++|..++-.+.
T Consensus 148 ~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~p~~~~vIaegGI~t~ 223 (260)
T PRK00278 148 QLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLIPSDRLVVSESGIFTP 223 (260)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhCCCCCEEEEEeCCCCH
Confidence 3333444444557664 467888888665532 378776542 1 11222 55556653 233 3588889998899
Q ss_pred HHHHHHHhcCCcEEEeC
Q 006774 119 SAVMRGIRHGACDYLIK 135 (632)
Q Consensus 119 e~~~eAl~~GA~DYL~K 135 (632)
+.+.++.++|++.++.-
T Consensus 224 ed~~~~~~~Gad~vlVG 240 (260)
T PRK00278 224 EDLKRLAKAGADAVLVG 240 (260)
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 99999999999998654
No 182
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=49.02 E-value=85 Score=31.55 Aligned_cols=67 Identities=10% Similarity=0.188 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCCce-EEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcC-CcEEEe
Q 006774 66 AAVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDYLI 134 (632)
Q Consensus 66 g~eALe~L~e~~~~pD-LVILDi~MPdm-dG--leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~G-A~DYL~ 134 (632)
..+..+.+.+.. ++ +++.|....+. .| ++++++++....+|+|.-.+-.+.+.+.++++.| +++.+.
T Consensus 148 ~~e~~~~~~~~g--~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFEDAG--VKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHhcC--CCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 345555555432 55 88888765432 34 6888888766679999988888999999999988 988875
No 183
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=48.79 E-value=2.2e+02 Score=30.02 Aligned_cols=58 Identities=9% Similarity=0.134 Sum_probs=42.5
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcE------EEeCCCCHHHHHHHHHHHHHh
Q 006774 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD------YLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 95 leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~D------YL~KP~~~eeL~~~L~~vlr~ 152 (632)
++.+.++++..++|||...+-.+.+.+.+++..||+. ++.+|.-..++.+-+.+.+.+
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~ 286 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKA 286 (300)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHH
Confidence 3566777666679999998888999999999999886 466675555555555555543
No 184
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=48.38 E-value=2.7e+02 Score=30.46 Aligned_cols=98 Identities=11% Similarity=0.124 Sum_probs=63.4
Q ss_pred EEEEEeCC----HHHHHHHHHHHHhCC-CeEE--EEcCHHHHHHHHHHcCCCceEEEEecCCC-----------CCC--H
Q 006774 35 RVLVVDDD----ITCLRILEQMLRRCL-YNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMD--G 94 (632)
Q Consensus 35 rVLIVDDd----~~ir~~L~~lL~~~g-y~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MP-----------dmd--G 94 (632)
.+++||-- ....+.++.+-+.+. ..|. .+.+.++|..++.. .+|.+.+-..-. +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 67888633 334444444433332 3332 47788888877753 378876442111 112 4
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 95 leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+..++.+.....+|||.-.+-.....+.+|+..||+.+..=
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 55677776555799998888888999999999999988764
No 185
>PRK13566 anthranilate synthase; Provisional
Probab=48.33 E-value=70 Score=38.55 Aligned_cols=80 Identities=24% Similarity=0.284 Sum_probs=51.2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEec--CCC-CCCHHHHHHHHhccCC
Q 006774 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV--HMP-DMDGFKLLEHIGLEMD 106 (632)
Q Consensus 30 ~p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi--~MP-dmdGleLL~~Lr~~~~ 106 (632)
...+++|||||........+.++|+..|++|........ .+.+... .||.||+-= ..| +.+-.++++++. ..+
T Consensus 523 ~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~~--~~DgVVLsgGpgsp~d~~~~~lI~~a~-~~~ 598 (720)
T PRK13566 523 VGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDRV--NPDLVVLSPGPGRPSDFDCKATIDAAL-ARN 598 (720)
T ss_pred CCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhhc--CCCEEEECCCCCChhhCCcHHHHHHHH-HCC
Confidence 346789999999988889999999999998877665432 1222222 489888721 112 112334444442 346
Q ss_pred CcEEEEe
Q 006774 107 LPVIMMS 113 (632)
Q Consensus 107 iPIIILS 113 (632)
+||+-+.
T Consensus 599 iPILGIC 605 (720)
T PRK13566 599 LPIFGVC 605 (720)
T ss_pred CcEEEEe
Confidence 8988776
No 186
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.81 E-value=1.8e+02 Score=29.70 Aligned_cols=93 Identities=16% Similarity=0.090 Sum_probs=58.8
Q ss_pred HHHHhCC-CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC-CCc-EEE-EecCCCHHHHHHHHh
Q 006774 51 QMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLP-VIM-MSADGRVSAVMRGIR 126 (632)
Q Consensus 51 ~lL~~~g-y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~-~iP-III-LSa~~d~e~~~eAl~ 126 (632)
..|...+ .-|....+.++++..++... .--+=++.+.|-.-+.++.++.|+... +-| +++ .-.--+.+.+.++++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~ 86 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL 86 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH
Confidence 3444443 45667778888877665421 123446677777778999999996433 222 333 333457788899999
Q ss_pred cCCcEEEeCCCCHHHHHHH
Q 006774 127 HGACDYLIKPIREEELKNI 145 (632)
Q Consensus 127 ~GA~DYL~KP~~~eeL~~~ 145 (632)
+||. |+.-|....++.+.
T Consensus 87 aGA~-FivsP~~~~~v~~~ 104 (213)
T PRK06552 87 AGAQ-FIVSPSFNRETAKI 104 (213)
T ss_pred cCCC-EEECCCCCHHHHHH
Confidence 9997 77778555555443
No 187
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=47.33 E-value=20 Score=37.77 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=35.6
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEec
Q 006774 33 GLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (632)
Q Consensus 33 glrVLIVDDd~~---ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi 87 (632)
+.+|.+|+-|+. ..+.+..+-+..+..+..+.+..+..+.+.... .+|+||+|.
T Consensus 224 ~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-~~d~vliDt 280 (282)
T TIGR03499 224 NKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-DKDLILIDT 280 (282)
T ss_pred CCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-CCCEEEEeC
Confidence 378999988863 233444444444666666777776666666543 589999995
No 188
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=47.32 E-value=2.8e+02 Score=27.01 Aligned_cols=99 Identities=10% Similarity=0.063 Sum_probs=60.2
Q ss_pred CcEEEEEeCCH--HHHHHHHHHHHhCCCeEE----EEcCHHHHHHHHHHcCCCceEEEEecCC-C----CCCHHHHHHHH
Q 006774 33 GLRVLVVDDDI--TCLRILEQMLRRCLYNVT----TCSQAAVALDILRERKGCFDVVLSDVHM-P----DMDGFKLLEHI 101 (632)
Q Consensus 33 glrVLIVDDd~--~ir~~L~~lL~~~gy~V~----~a~sg~eALe~L~e~~~~pDLVILDi~M-P----dmdGleLL~~L 101 (632)
|...+++.+.. .....+.+.+++.+..+. .+.+..++++.+. . ..|.|.+...- + ...+.+.++.+
T Consensus 77 Gad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~-~--~~d~v~~~~~~~~~~~~~~~~~~~i~~~ 153 (202)
T cd04726 77 GADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK-L--GVDIVILHRGIDAQAAGGWWPEDDLKKV 153 (202)
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH-C--CCCEEEEcCcccccccCCCCCHHHHHHH
Confidence 44455554432 223344445555555443 5667788877443 2 37888774211 1 23457777777
Q ss_pred hccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 102 r~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+...++||++.-+- ..+.+.++++.||+.++.-
T Consensus 154 ~~~~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 154 KKLLGVKVAVAGGI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred HhhcCCCEEEECCc-CHHHHHHHHhcCCCEEEEe
Confidence 65467888766555 4788889999999987654
No 189
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=47.26 E-value=1.3e+02 Score=32.27 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=59.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CCCe---EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006774 35 RVLVVDDDITCLRILEQMLRR----CLYN---VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~----~gy~---V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~i 107 (632)
-|||=|.+-...-.++..+++ .++. -+.+++.+++.+.+.. .+|+|++|-.-| ..--+.++.+ ....-
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a---gaDiImLDNm~~-e~~~~av~~l-~~~~~ 234 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA---GADIIMLDNMSP-EELKEAVKLL-GLAGR 234 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc---CCCEEEecCCCH-HHHHHHHHHh-ccCCc
Confidence 378888877666656666654 2442 2478899999998875 389999994332 2222333332 12333
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEE
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DY 132 (632)
.++-.|+.-..+.+......|+|-+
T Consensus 235 ~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 235 ALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred eEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 3455777778888877778888743
No 190
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=47.15 E-value=1.7e+02 Score=29.57 Aligned_cols=100 Identities=21% Similarity=0.284 Sum_probs=54.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--C----C---------eEEEEcCHHHHHHHHHHc-CCCceEEEEecCC-CCCCHHHH
Q 006774 35 RVLVVDDDITCLRILEQMLRRC--L----Y---------NVTTCSQAAVALDILRER-KGCFDVVLSDVHM-PDMDGFKL 97 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~~--g----y---------~V~~a~sg~eALe~L~e~-~~~pDLVILDi~M-PdmdGleL 97 (632)
+..||..-+..++.+++++..+ | | .|..+.+.++|++.+++. ...|-+|-+|..- ++.-.++-
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~ 123 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAE 123 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHH
Confidence 5788888899999999998753 2 1 278899999999988763 2358999999883 44445555
Q ss_pred HHHHhccCCCcEEEEec--CCCHHHHHHHHhcCCcEEEeCCCCH
Q 006774 98 LEHIGLEMDLPVIMMSA--DGRVSAVMRGIRHGACDYLIKPIRE 139 (632)
Q Consensus 98 L~~Lr~~~~iPIIILSa--~~d~e~~~eAl~~GA~DYL~KP~~~ 139 (632)
+++.-...+-|++++-+ ..-.+ +.+ ..+||++.|+.-
T Consensus 124 lr~~l~~~~~P~LllFGTGwGL~~---ev~--~~~D~iLePI~g 162 (185)
T PF09936_consen 124 LRRMLEEEDRPVLLLFGTGWGLAP---EVM--EQCDYILEPIRG 162 (185)
T ss_dssp HHHHHHH--S-EEEEE--TT---H---HHH--TT-SEEB--TTT
T ss_pred HHHHHhccCCeEEEEecCCCCCCH---HHH--HhcCeeEccccc
Confidence 55443345567666544 33333 332 357899999753
No 191
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=46.43 E-value=3.1e+02 Score=27.31 Aligned_cols=78 Identities=14% Similarity=-0.004 Sum_probs=51.9
Q ss_pred hCCCeE-EEEcCHHHHHHHHHHcCCCceEEEEec-CCC-CCCHHHHHHHHhcc--CCCcEEEEecCCCHHHHHHHHhcCC
Q 006774 55 RCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV-HMP-DMDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGA 129 (632)
Q Consensus 55 ~~gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi-~MP-dmdGleLL~~Lr~~--~~iPIIILSa~~d~e~~~eAl~~GA 129 (632)
..+..+ ..+.+.+++.+..+. .+|.+.+-- ... ...+++++++++.. .++|+|...+-...+.+.+++++||
T Consensus 119 ~~g~~~~v~v~~~~e~~~~~~~---g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga 195 (217)
T cd00331 119 ELGMEVLVEVHDEEELERALAL---GAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGA 195 (217)
T ss_pred HcCCeEEEEECCHHHHHHHHHc---CCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCC
Confidence 346654 356677776665542 377776541 100 11235777877644 4689999999888899999999999
Q ss_pred cEEEeC
Q 006774 130 CDYLIK 135 (632)
Q Consensus 130 ~DYL~K 135 (632)
++++.-
T Consensus 196 ~gvivG 201 (217)
T cd00331 196 DAVLIG 201 (217)
T ss_pred CEEEEC
Confidence 998653
No 192
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=46.35 E-value=1.6e+02 Score=33.60 Aligned_cols=100 Identities=18% Similarity=0.247 Sum_probs=62.4
Q ss_pred CCcEEEEEeCC----HHHHHHHHHHHHhC-CCe--EEEEcCHHHHHHHHHHcCCCceEEEEecCCCC------------C
Q 006774 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (632)
Q Consensus 32 ~glrVLIVDDd----~~ir~~L~~lL~~~-gy~--V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd------------m 92 (632)
.+.+++++|.. ..+.+.++.+-... +.. +..+.+.++|..++.. ..|.|.+-+ -|+ .
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~-g~gs~~~~r~~~~~g~ 314 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGI-GPGSICTTRIVAGVGV 314 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECC-CCCccccceeecCCCc
Confidence 46778888864 23334444444433 223 3567788888887754 378776533 121 1
Q ss_pred CHHHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 93 dGleLL~~Lr---~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
.-++++..++ ....+|||.=.+-.....+.+|+.+||+..+.=
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 2244554443 234688888777788899999999999987654
No 193
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=46.30 E-value=2.8e+02 Score=29.04 Aligned_cols=104 Identities=14% Similarity=0.097 Sum_probs=58.8
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EE--cCHHHHHHHHHHcCCCceEEEEecCCCC------CCHHHHHHHHh
Q 006774 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT-TC--SQAAVALDILRERKGCFDVVLSDVHMPD------MDGFKLLEHIG 102 (632)
Q Consensus 33 glrVLIVDDd~-~ir~~L~~lL~~~gy~V~-~a--~sg~eALe~L~e~~~~pDLVILDi~MPd------mdGleLL~~Lr 102 (632)
+..-+|+=|.+ .....+...+++.+.... .+ .+..+-+..+.+....+..++.=..-.+ .+-.+.++++|
T Consensus 115 GvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr 194 (256)
T TIGR00262 115 GVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLK 194 (256)
T ss_pred CCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHH
Confidence 34444444443 444556666666675533 22 2223344444443323555544111111 12466777777
Q ss_pred ccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 103 LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 103 ~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
...+.||++=.+-.+.+.+.++.++||+.++.-.
T Consensus 195 ~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 195 AYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred hhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 6667787764455568889999999999999874
No 194
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=46.29 E-value=3.3e+02 Score=27.51 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=43.6
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 80 pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.|++++-....+.-|+.+++.+. ..+|||.. ... ...+.+..+..+++.++-+.+++.+++..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a--~G~Pvi~~-~~~---~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA--AGVPVIAS-DIG---GMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH--CCCCEEEC-CCC---CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 46666533223344566677664 45777753 222 23455677888999999999999999988875
No 195
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=46.10 E-value=1.5e+02 Score=34.30 Aligned_cols=101 Identities=15% Similarity=0.222 Sum_probs=66.2
Q ss_pred CCcEEEEEeCCH----HHHHHHHHHHHhC-CCeEE--EEcCHHHHHHHHHHcCCCceEEEEecC--------------CC
Q 006774 32 AGLRVLVVDDDI----TCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVH--------------MP 90 (632)
Q Consensus 32 ~glrVLIVDDd~----~ir~~L~~lL~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~--------------MP 90 (632)
.+..|+++|-.. ...+.++.+=+.+ +..+. .+.+.++|..+++. ..|.|.+-+. .|
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~ 335 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCC
Confidence 356788887542 1223333333333 23443 47888888888763 3898876431 12
Q ss_pred CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 91 DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 91 dmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
....+..+..+.....+|||.=.+-.....+.+|+.+||+....=
T Consensus 336 ~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 336 QATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred cccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 233455566665556799999888889999999999999988764
No 196
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=46.04 E-value=1.7e+02 Score=33.91 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=45.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcC-HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~s-g~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr-~~~~iPII 110 (632)
+..+++||.|+...+.++ +.++.+...+- ..+.++.+.- ++.|.+++-..-.+ +-..++..++ ..++.+||
T Consensus 440 g~~vvvId~d~~~~~~~~----~~g~~~i~GD~~~~~~L~~a~i--~~a~~viv~~~~~~-~~~~iv~~~~~~~~~~~ii 512 (558)
T PRK10669 440 GIPLVVIETSRTRVDELR----ERGIRAVLGNAANEEIMQLAHL--DCARWLLLTIPNGY-EAGEIVASAREKRPDIEII 512 (558)
T ss_pred CCCEEEEECCHHHHHHHH----HCCCeEEEcCCCCHHHHHhcCc--cccCEEEEEcCChH-HHHHHHHHHHHHCCCCeEE
Confidence 456677777665443332 23555543321 2233333322 23676666542211 1223444444 35678888
Q ss_pred EEecCCCHHHHHHHHhcCCcEEE
Q 006774 111 MMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL 133 (632)
..+.+ .+......+.|++..+
T Consensus 513 ar~~~--~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 513 ARAHY--DDEVAYITERGANQVV 533 (558)
T ss_pred EEECC--HHHHHHHHHcCCCEEE
Confidence 87653 3444445578988555
No 197
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=45.97 E-value=1.7e+02 Score=30.76 Aligned_cols=115 Identities=20% Similarity=0.245 Sum_probs=66.6
Q ss_pred CcEEEEEeCCHHH----HHHH--HHHHHhCCCeEEE--EcCHHHHHHHHHHcCCCceEEEEecCCCCCCH-----HHHHH
Q 006774 33 GLRVLVVDDDITC----LRIL--EQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDMDG-----FKLLE 99 (632)
Q Consensus 33 glrVLIVDDd~~i----r~~L--~~lL~~~gy~V~~--a~sg~eALe~L~e~~~~pDLVILDi~MPdmdG-----leLL~ 99 (632)
.+|+=|+.|+... .+.+ .+.|-+.||.|.. ..|..-|.++. +.. + -+++=+--|-.+| ...++
T Consensus 93 wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~-d~G-c--aavMPlgsPIGSg~Gi~n~~~l~ 168 (247)
T PF05690_consen 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLE-DAG-C--AAVMPLGSPIGSGRGIQNPYNLR 168 (247)
T ss_dssp EEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHH-HTT----SEBEEBSSSTTT---SSTHHHHH
T ss_pred eEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHH-HCC-C--CEEEecccccccCcCCCCHHHHH
Confidence 3677777776432 2222 2334566999874 34444454443 322 2 2445555564444 35667
Q ss_pred HHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC-----CCCHHHHHHHHHHHHH
Q 006774 100 HIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVR 151 (632)
Q Consensus 100 ~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K-----P~~~eeL~~~L~~vlr 151 (632)
.|+...++|||+=.+-.....+.++++.|++..|.- --++-.+.++++..+.
T Consensus 169 ~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 169 IIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 776666999999999999999999999999999875 3567777777777665
No 198
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=45.89 E-value=1.1e+02 Score=31.41 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 66 AAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 66 g~eALe~L~e~~~~pDLVILDi~MPdm-dG--leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
..+.++.+... .-.++++|+..-++ .| +++++.+.....+||++-.+-.+.+.+.++++.|++..+.=
T Consensus 148 ~~~~~~~~~~~--~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 218 (233)
T cd04723 148 PEELLRRLAKW--PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALVA 218 (233)
T ss_pred HHHHHHHHHHh--CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEe
Confidence 55666666543 23699999976542 23 67788887667899999888999999999999999988753
No 199
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=45.86 E-value=25 Score=35.04 Aligned_cols=74 Identities=12% Similarity=0.154 Sum_probs=47.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCC--CCCC--HHHHHHHHhccCCCcEEE
Q 006774 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM--PDMD--GFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 36 VLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~M--Pdmd--GleLL~~Lr~~~~iPIII 111 (632)
|||||.+..+-..|...|++.++++......+..++.+... .||.||+-=.- |... -.++++.+ ...+||+-
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iIlsgGP~~p~~~~~~~~~i~~~--~~~~PvLG 77 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENM--KPDFLMISPGPCSPNEAGISMEVIRYF--AGKIPIFG 77 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhC--CCCEEEECCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 89999999999999999999998887766554333434333 38888874211 1111 12333332 24688887
Q ss_pred Ee
Q 006774 112 MS 113 (632)
Q Consensus 112 LS 113 (632)
+.
T Consensus 78 IC 79 (195)
T PRK07649 78 VC 79 (195)
T ss_pred Ec
Confidence 65
No 200
>PRK07695 transcriptional regulator TenI; Provisional
Probab=45.81 E-value=1.8e+02 Score=28.76 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=47.8
Q ss_pred EEcCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEE
Q 006774 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi~MPd-------mdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DY 132 (632)
++.+.+++.+... . ..|.|++.-..+. ..|++.++++.....+||+.+-+- +.+.+.++++.|++.+
T Consensus 101 s~~s~e~a~~a~~-~--Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 101 SVHSLEEAIQAEK-N--GADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred eCCCHHHHHHHHH-c--CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 5667777665443 2 4898887643332 236788888876667999988776 7778888999999877
No 201
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=45.70 E-value=1.7e+02 Score=30.88 Aligned_cols=107 Identities=23% Similarity=0.241 Sum_probs=59.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPII 110 (632)
.++++++.+.+. .+.++..++..+. .+.......+..+++.. .|++++=-. .+.-|.-+++.+. ..+|||
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~-~Eg~~~~~lEAma--~G~Pvv 300 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSL-AEGISNTILEAMA--SGLPVI 300 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccc-cccCchHHHHHHH--cCCCEE
Confidence 356666665443 2445555554432 12222222333333332 466554222 2233556666663 467887
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
. |.... ..+.+..|..+++..|-+.+++...+..++.
T Consensus 301 ~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 301 A-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred E-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 6 33222 3455667888999999999999999987764
No 202
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=45.37 E-value=1.2e+02 Score=31.27 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 67 AVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 67 ~eALe~L~e~~~~pDLVILDi~MPdm-dG--leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
.+.++.+.+.. --.+|++|+..-++ .| +++++.+.....+|||+-.+-.+.+.+.++++.|++..+.=
T Consensus 151 ~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 151 FSFVRQLSDIP-LGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred HHHHHHHHHcC-CCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 44444444432 23799999976543 33 67788887667899999888889999999999999998864
No 203
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=44.52 E-value=1.2e+02 Score=29.47 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=49.5
Q ss_pred EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCC-------CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEE
Q 006774 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDM-------DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 60 V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdm-------dGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DY 132 (632)
-.+|.+.+++.+..+ . .+|.|++.-..|.. -|++.++++.....+||+.+-+-. .+.+.++.+.|++++
T Consensus 99 g~S~h~~~e~~~a~~-~--g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~-~~~i~~l~~~Ga~gv 174 (180)
T PF02581_consen 99 GASCHSLEEAREAEE-L--GADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGIT-PENIPELREAGADGV 174 (180)
T ss_dssp EEEESSHHHHHHHHH-C--TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEE
T ss_pred EeecCcHHHHHHhhh-c--CCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHHcCCCEE
Confidence 357889999666543 2 38999998776543 389999988777779999997754 445667889999886
Q ss_pred E
Q 006774 133 L 133 (632)
Q Consensus 133 L 133 (632)
-
T Consensus 175 A 175 (180)
T PF02581_consen 175 A 175 (180)
T ss_dssp E
T ss_pred E
Confidence 4
No 204
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=43.79 E-value=2.3e+02 Score=31.02 Aligned_cols=104 Identities=8% Similarity=0.102 Sum_probs=58.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC--CCeEE-EEcC-HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVT-TCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~--gy~V~-~a~s-g~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~i 107 (632)
..+||.||.- .. .......+... ++++. .++. .+.|.+..++.. +. +..| --+++ ...++
T Consensus 2 ~~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~g--i~-~y~~-------~eell----~d~Di 65 (343)
T TIGR01761 2 DVQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILAQGSERSRALAHRLG--VP-LYCE-------VEELP----DDIDI 65 (343)
T ss_pred CCcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhC--CC-ccCC-------HHHHh----cCCCE
Confidence 3578899887 43 33333344432 45554 3333 344444433321 11 1111 11222 23455
Q ss_pred cEEEEec----CCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 108 PVIMMSA----DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 108 PIIILSa----~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
-+|.+.. ....+.+.+++++|..=++.||+..+|..+.++.+-+
T Consensus 66 ~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 66 ACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred EEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 5555521 3457788899999999999999998777777666544
No 205
>PRK04302 triosephosphate isomerase; Provisional
Probab=43.73 E-value=3.6e+02 Score=27.25 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=37.0
Q ss_pred HHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC--CCHHHHHHHHHHH
Q 006774 96 KLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKP--IREEELKNIWQHV 149 (632)
Q Consensus 96 eLL~~Lr~~-~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP--~~~eeL~~~L~~v 149 (632)
++++.++.. .++|||.-.+-...+.+..+.+.|+++++.-. +..+.+...++.+
T Consensus 162 ~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~ 218 (223)
T PRK04302 162 DAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRDL 218 (223)
T ss_pred HHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHH
Confidence 445556653 46899888777788888888899999997654 3344444444433
No 206
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=43.56 E-value=4.6e+02 Score=28.39 Aligned_cols=109 Identities=14% Similarity=0.201 Sum_probs=61.4
Q ss_pred CcEEEEEeCCH--------HHHHHHHHHHHhCCCeEEEEc--CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006774 33 GLRVLVVDDDI--------TCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 33 glrVLIVDDd~--------~ir~~L~~lL~~~gy~V~~a~--sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr 102 (632)
.++++||.+.+ ...+.++.+....+..+.... +.++..+++.. .|++++-....+.-|.-+++.+.
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH
Confidence 35677776532 223334444444343443332 34455555543 57777643332333455556553
Q ss_pred ccCCCcEEEEecCCCHHHHHHHHhcCCcEE-EeCCCCHHHHHHHHHHHHH
Q 006774 103 LEMDLPVIMMSADGRVSAVMRGIRHGACDY-LIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 103 ~~~~iPIIILSa~~d~e~~~eAl~~GA~DY-L~KP~~~eeL~~~L~~vlr 151 (632)
..+|||... ... ..+.+..|.++| +..|.+.++|.+.+.+++.
T Consensus 300 --~G~PVI~s~-~gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 300 --AGKPVLAST-KGG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred --cCCCEEEeC-CCC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 468887643 222 335566788898 5678999999999988764
No 207
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=43.48 E-value=1.4e+02 Score=29.13 Aligned_cols=78 Identities=14% Similarity=0.232 Sum_probs=51.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC--CCeEEEEc-------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~--gy~V~~a~-------sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr 102 (632)
.+.+|.++...+...+.+.+.|+.. +..+..+. +..+.++.+.+.. ||+|++-+.+|... .++.+.+
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~--pdiv~vglG~PkQE--~~~~~~~ 120 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASG--ADILFVGLGAPKQE--LWIARHK 120 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcC--CCEEEEECCCCHHH--HHHHHHH
Confidence 4689999999999999988888875 34443321 1223456666654 99999999999755 3344454
Q ss_pred ccCCCcEEEEe
Q 006774 103 LEMDLPVIMMS 113 (632)
Q Consensus 103 ~~~~iPIIILS 113 (632)
.....++++-.
T Consensus 121 ~~l~~~v~~~v 131 (171)
T cd06533 121 DRLPVPVAIGV 131 (171)
T ss_pred HHCCCCEEEEe
Confidence 43455666543
No 208
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=43.31 E-value=2.5e+02 Score=30.39 Aligned_cols=100 Identities=17% Similarity=0.302 Sum_probs=58.1
Q ss_pred CCcEEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EEcCHHHHHHHHHHcCCCceEEEEecCCC------------CC
Q 006774 32 AGLRVLVVDD----DITCLRILEQMLRRCL-YNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP------------DM 92 (632)
Q Consensus 32 ~glrVLIVDD----d~~ir~~L~~lL~~~g-y~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MP------------dm 92 (632)
.+.+++++|- .....+.++.+-+... ..+. .+.+.+.|..+++. ..|.|.+.+ -| +.
T Consensus 105 agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~-g~G~~~~t~~~~g~g~ 180 (325)
T cd00381 105 AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGI-GPGSICTTRIVTGVGV 180 (325)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECC-CCCcCcccceeCCCCC
Confidence 3567777763 2333444444333322 3333 46777787776643 378887632 11 11
Q ss_pred CHHHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 93 dGleLL~~Lr---~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
.-+.++..+. ....+|||.--+-.+...+.+++.+||+....=
T Consensus 181 p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiG 226 (325)
T cd00381 181 PQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLG 226 (325)
T ss_pred CHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEec
Confidence 1233333332 233689886666677888999999999988663
No 209
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.15 E-value=3.4e+02 Score=29.11 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=58.0
Q ss_pred EEEEEeCCHHHH--H--HHHHHHH----hCCC---eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 006774 35 RVLVVDDDITCL--R--ILEQMLR----RCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (632)
Q Consensus 35 rVLIVDDd~~ir--~--~L~~lL~----~~gy---~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~ 103 (632)
.|||-|.|-... . .+...++ ...+ ..+.+.+.+++.+.+.. .+|+|++|= |.-.+--+.++.++
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn-~s~e~l~~av~~~~- 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDN-FSLDDLREGVELVD- 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECC-CCHHHHHHHHHHhC-
Confidence 488888886542 1 2444443 3332 33589999999998853 489999993 33223333333333
Q ss_pred cCCCcEEEEecCCCHHHHHHHHhcCCcEE
Q 006774 104 EMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 104 ~~~iPIIILSa~~d~e~~~eAl~~GA~DY 132 (632)
...+|-.|+.-+.+.+.+....|+|-.
T Consensus 236 --~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 236 --GRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred --CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 223677888888888888888898743
No 210
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=43.11 E-value=52 Score=35.37 Aligned_cols=62 Identities=11% Similarity=0.062 Sum_probs=46.7
Q ss_pred CHHHHHHHHhccCCCcEE--EEecCCCHHHHHHHHhcCCcEEEeC-----CCCHHHHHHHHHHHHHhhc
Q 006774 93 DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 93 dGleLL~~Lr~~~~iPII--ILSa~~d~e~~~eAl~~GA~DYL~K-----P~~~eeL~~~L~~vlr~~~ 154 (632)
.+++++++++....+||| ...+-...+.+..+++.||+.++.= .-++.+....+..++..+.
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~ 258 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHYD 258 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcC
Confidence 478888888766679998 6666668899999999999998543 3467777777776665543
No 211
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=42.89 E-value=2.6e+02 Score=31.51 Aligned_cols=101 Identities=14% Similarity=0.202 Sum_probs=61.9
Q ss_pred CCcEEEEEeCC----HHHHHHHHHHHHhC-CCeE--EEEcCHHHHHHHHHHcCCCceEEEEecCCCC-----------CC
Q 006774 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD-----------MD 93 (632)
Q Consensus 32 ~glrVLIVDDd----~~ir~~L~~lL~~~-gy~V--~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-----------md 93 (632)
.+..|++||-- ....+.++.+=+.+ ...+ .-+.+.++|..+++. ..|.|.+-+.-.. ..
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCC
Confidence 46778888752 23333333332222 2222 357888888888764 3788876532110 11
Q ss_pred HHHHH---HHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 94 GFKLL---EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 94 GleLL---~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
-+..+ ..+.....+|||.=.+-.....+.+|+.+||+..+.=
T Consensus 241 ~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 241 QITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 23333 3333345789998888888999999999999988764
No 212
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=42.41 E-value=1.7e+02 Score=29.40 Aligned_cols=83 Identities=14% Similarity=0.102 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCC---------CCHHHHHHHHhc--cCCCcEEEEecCCCHHHHHH---HHhcCCc
Q 006774 65 QAAVALDILRERKGCFDVVLSDVHMPD---------MDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR---GIRHGAC 130 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~MPd---------mdGleLL~~Lr~--~~~iPIIILSa~~d~e~~~e---Al~~GA~ 130 (632)
+..+.++.+... .+|.|++|+.-.. .+-.+++..++. .....+++.....+.....+ +++.|++
T Consensus 9 ~~~~~~~~a~~~--g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~ 86 (221)
T PF03328_consen 9 NSPKMLEKAAAS--GADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGAD 86 (221)
T ss_dssp TSHHHHHHHHTT--CSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHhc--CCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCCC
Confidence 334445555443 4999999986543 222334444433 23457888777777666666 8999999
Q ss_pred EEEeCC-CCHHHHHHHHHHH
Q 006774 131 DYLIKP-IREEELKNIWQHV 149 (632)
Q Consensus 131 DYL~KP-~~~eeL~~~L~~v 149 (632)
+++.-= -+.++++.+++.+
T Consensus 87 gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 87 GIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp EEEETT--SHHHHHHHHHHH
T ss_pred eeeccccCcHHHHHHHHHHH
Confidence 876543 4677777666654
No 213
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=41.98 E-value=3.4e+02 Score=28.62 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=40.7
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEE------EeCCCCHHHHHHHHHHHHH
Q 006774 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY------LIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 95 leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DY------L~KP~~~eeL~~~L~~vlr 151 (632)
++.+++++...++|||...+-.+.+.+.+.+..||+.. +..|.-..++++-+.+.+.
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~ 285 (301)
T PRK07259 223 LRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLD 285 (301)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHH
Confidence 67778887666899999999889999999999998754 3345444444444444443
No 214
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=41.97 E-value=2.6e+02 Score=30.02 Aligned_cols=103 Identities=21% Similarity=0.260 Sum_probs=59.2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCeE-----EEEcCHHHHHHHHHHcCCCceEEEEecCC---C------CCCH-
Q 006774 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNV-----TTCSQAAVALDILRERKGCFDVVLSDVHM---P------DMDG- 94 (632)
Q Consensus 30 ~p~glrVLIVDDd~~ir~~L~~lL~~~gy~V-----~~a~sg~eALe~L~e~~~~pDLVILDi~M---P------dmdG- 94 (632)
|...-|||=+|-|+..++..-..-++.+..+ ..-.-.+...+++.+.+ |||+++-=+= - +.+.
T Consensus 101 f~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlViTGHD~~~K~~~d~~dl~~Y 178 (283)
T TIGR02855 101 FGMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVR--PDILVITGHDAYSKNKGNYMDLNAY 178 (283)
T ss_pred CCCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhC--CCEEEEeCchhhhcCCCChhhhhhh
Confidence 4444589999999998888777777765544 33344556667777765 9988874221 1 1111
Q ss_pred ------HHHHHHHhc-cCCCc-EEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 95 ------FKLLEHIGL-EMDLP-VIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 95 ------leLL~~Lr~-~~~iP-IIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
.+.++..|. .++.- .|++++- -...-+..+++||+ |-.-|
T Consensus 179 rnSkyFVeaVk~aR~y~~~~D~LVIFAGA-CQS~yEall~AGAN-FASSP 226 (283)
T TIGR02855 179 RHSKYFVETVREARKYVPSLDQLVIFAGA-CQSHFESLIRAGAN-FASSP 226 (283)
T ss_pred hhhHHHHHHHHHHHhcCCCcccEEEEcch-hHHHHHHHHHcCcc-ccCCc
Confidence 123333332 23332 4444443 34445566799997 55544
No 215
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=41.96 E-value=1e+02 Score=33.38 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=30.2
Q ss_pred CCcEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEc---CH----HHHHHHHHHcCCCceEEEEecC
Q 006774 32 AGLRVLVVDDDITCL---RILEQMLRRCLYNVTTCS---QA----AVALDILRERKGCFDVVLSDVH 88 (632)
Q Consensus 32 ~glrVLIVDDd~~ir---~~L~~lL~~~gy~V~~a~---sg----~eALe~L~e~~~~pDLVILDi~ 88 (632)
.+.+|+|++-|..-. +.+...-...+..+.... +. .+++..... ..+|+||+|.-
T Consensus 141 ~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~--~~~D~ViIDTa 205 (318)
T PRK10416 141 QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA--RGIDVLIIDTA 205 (318)
T ss_pred cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEeCC
Confidence 467999999876322 233334444455554432 22 233333333 34999999973
No 216
>PRK10119 putative hydrolase; Provisional
Probab=41.64 E-value=13 Score=38.49 Aligned_cols=36 Identities=8% Similarity=0.149 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCc
Q 006774 265 ASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGR 306 (632)
Q Consensus 265 aSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGK 306 (632)
-.|+.||...++.| ++.-+.+ .+.+..|+-||||+.
T Consensus 27 ~~Hi~RV~~lA~~I---a~~e~~D---~~vv~lAAlLHDv~d 62 (231)
T PRK10119 27 ICHFRRVWATAQKL---AADDDVD---MLVVLTACYFHDIVS 62 (231)
T ss_pred hHHHHHHHHHHHHH---HHhcCCC---HHHHHHHHHHhhcch
Confidence 57999999999999 7766554 346677899999975
No 217
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=41.62 E-value=1.6e+02 Score=29.13 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=33.8
Q ss_pred ceEEEEecCCCCCCH-------HHHHHHHhcc---CCC-cEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 80 FDVVLSDVHMPDMDG-------FKLLEHIGLE---MDL-PVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 80 pDLVILDi~MPdmdG-------leLL~~Lr~~---~~i-PIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
+|.++++..-|+.+| ++.+++++.. ..+ +.|++.+--+.+.+.++.+.|++.++.-.
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgS 199 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGS 199 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 677777654454433 3444444321 122 45556666666778888889999876554
No 218
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=41.37 E-value=1.4e+02 Score=32.20 Aligned_cols=91 Identities=9% Similarity=0.060 Sum_probs=56.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----C--CCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006774 35 RVLVVDDDITCLRILEQMLRR----C--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~----~--gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iP 108 (632)
.|||-|.|-...-.+...++. . ....+.+.+.+++.+.+.. .+|+|++|-.-| .+--++++.++ .-.
T Consensus 181 ~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~---gaDiI~LDn~s~-e~~~~av~~~~---~~~ 253 (296)
T PRK09016 181 AFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKA---GADIIMLDNFTT-EQMREAVKRTN---GRA 253 (296)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEeCCCCh-HHHHHHHHhhc---CCe
Confidence 367766665444344444432 2 1245578999999999864 389999995333 22223333332 223
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEE
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DY 132 (632)
.|..|+.-+.+.+.+..+.|+|-.
T Consensus 254 ~ieaSGGI~~~ni~~yA~tGVD~I 277 (296)
T PRK09016 254 LLEVSGNVTLETLREFAETGVDFI 277 (296)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEE
Confidence 566777778888888889999754
No 219
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=41.17 E-value=1.2e+02 Score=31.98 Aligned_cols=95 Identities=12% Similarity=0.039 Sum_probs=57.4
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCC---CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006774 35 RVLVVDDDITCLRILEQML----RRCL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL----~~~g---y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~i 107 (632)
.|||-|++......+...+ +..+ .....+.+.+++.+.+.. .+|.|.+|-.-|+ +--++++.++..+++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~e-~l~~~v~~i~~~~~i 228 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSPE-ELKEAVKLLKGLPRV 228 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhccCCCe
Confidence 4788777755443332222 2222 234578899999988753 3899999965441 111233334333355
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
| |..++--+.+.+.+..+.|++.+-.
T Consensus 229 ~-i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 229 L-LEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred E-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 5 4455666778888888999987643
No 220
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=41.14 E-value=1.7e+02 Score=28.52 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=52.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC--CCeEEEEcC-------HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQ-------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~--gy~V~~a~s-------g~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr 102 (632)
.+.+|.++...+...+.+...|+.. +..+..+.+ .++.++.+... .||+|++-+.+|... .++.+.+
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~--~pdiv~vglG~PkQE--~~~~~~~ 122 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS--GPDIVFVGLGAPKQE--RWIARHR 122 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCCCHHH--HHHHHHH
Confidence 4679999999999999999999875 445543332 33445556554 499999999888644 3455555
Q ss_pred ccCCCcEEEEe
Q 006774 103 LEMDLPVIMMS 113 (632)
Q Consensus 103 ~~~~iPIIILS 113 (632)
..-..++++-.
T Consensus 123 ~~l~~~v~i~v 133 (172)
T PF03808_consen 123 QRLPAGVIIGV 133 (172)
T ss_pred HHCCCCEEEEE
Confidence 44455544433
No 221
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.08 E-value=2.9e+02 Score=28.47 Aligned_cols=85 Identities=12% Similarity=0.140 Sum_probs=50.7
Q ss_pred CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc--CCCc-EEE-EecCCCHHHHHHHHhcCCcEEE
Q 006774 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDLP-VIM-MSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 58 y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~--~~iP-III-LSa~~d~e~~~eAl~~GA~DYL 133 (632)
.-|....+.++|++.++... .--+=++.+.|-.-++++.++.|+.. ...| +++ .-.--+.+.+..++++||. |+
T Consensus 18 i~Vvr~~~~~~a~~~~~al~-~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~-Fi 95 (222)
T PRK07114 18 VPVFYHADVEVAKKVIKACY-DGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGAN-FI 95 (222)
T ss_pred EEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCC-EE
Confidence 45566777777777665421 11233566666666788888877421 1122 222 3334567788889999997 67
Q ss_pred eCCCCHHHHHH
Q 006774 134 IKPIREEELKN 144 (632)
Q Consensus 134 ~KP~~~eeL~~ 144 (632)
.-|....++.+
T Consensus 96 VsP~~~~~v~~ 106 (222)
T PRK07114 96 VTPLFNPDIAK 106 (222)
T ss_pred ECCCCCHHHHH
Confidence 77754444443
No 222
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=41.05 E-value=2.7e+02 Score=28.71 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=39.6
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcC-CcEEEe------CCCCHHHHHHHHH
Q 006774 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDYLI------KPIREEELKNIWQ 147 (632)
Q Consensus 95 leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~G-A~DYL~------KP~~~eeL~~~L~ 147 (632)
++++++++....+|||...+-.+.+.+.++++.| ++..+. +-++..+++..++
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 6888888777789999999889999999999888 887443 2355555544443
No 223
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=40.60 E-value=54 Score=33.03 Aligned_cols=53 Identities=30% Similarity=0.345 Sum_probs=38.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeE-EEEcCHHHHHHHHHHcCCCceEEEEec
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCL--YNV-TTCSQAAVALDILRERKGCFDVVLSDV 87 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~g--y~V-~~a~sg~eALe~L~e~~~~pDLVILDi 87 (632)
-++++||-+......+++.++..+ -.+ ....++..++..+... ..||+|++|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCC
Confidence 579999999999999999998776 223 3344555666555433 2499999994
No 224
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=40.22 E-value=5.5e+02 Score=28.67 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=57.9
Q ss_pred HHHHHHhCCCeEEE----EcCHHHHHHHHHHcCCCceEEEEecCC----CCCCHHHHHHHHhccCCCcEEEEecCCCHHH
Q 006774 49 LEQMLRRCLYNVTT----CSQAAVALDILRERKGCFDVVLSDVHM----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSA 120 (632)
Q Consensus 49 L~~lL~~~gy~V~~----a~sg~eALe~L~e~~~~pDLVILDi~M----PdmdGleLL~~Lr~~~~iPIIILSa~~d~e~ 120 (632)
+....++.+..+.. +.+..+....+.+. ..|.|.+.... ....+++.+++++...++||++..+- ..+.
T Consensus 99 ~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~--GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI-~~~n 175 (430)
T PRK07028 99 AVRAARKYGVRLMADLINVPDPVKRAVELEEL--GVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGL-DAET 175 (430)
T ss_pred HHHHHHHcCCEEEEEecCCCCHHHHHHHHHhc--CCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCC-CHHH
Confidence 33344445655443 23333333333332 37888665321 12456788888876556898876655 5677
Q ss_pred HHHHHhcCCcEEE-----eCCCCHHHHHHHHHHHHHh
Q 006774 121 VMRGIRHGACDYL-----IKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 121 ~~eAl~~GA~DYL-----~KP~~~eeL~~~L~~vlr~ 152 (632)
..++++.||+.+. .+.-++.+....+++.+++
T Consensus 176 ~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 176 AAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred HHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 8889999999764 4444555555555554443
No 225
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=39.96 E-value=2.1e+02 Score=28.94 Aligned_cols=92 Identities=10% Similarity=0.032 Sum_probs=55.2
Q ss_pred HHHhCC-CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE-EecCCCHHHHHHHHhcCC
Q 006774 52 MLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM-MSADGRVSAVMRGIRHGA 129 (632)
Q Consensus 52 lL~~~g-y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIII-LSa~~d~e~~~eAl~~GA 129 (632)
.|...+ .-|....+.+++++.++..- .-.+=++.+.+-..++++.++.++.....++++ .-.--+.+.+..++++||
T Consensus 6 ~l~~~~~~~v~r~~~~~~~~~~~~a~~-~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA 84 (206)
T PRK09140 6 PFTKLPLIAILRGITPDEALAHVGALI-EAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGG 84 (206)
T ss_pred HHHhCCEEEEEeCCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCC
Confidence 344433 34556667777776655421 122336666677778888888886544334332 223345677889999999
Q ss_pred cEEEeCCCCHHHHHHH
Q 006774 130 CDYLIKPIREEELKNI 145 (632)
Q Consensus 130 ~DYL~KP~~~eeL~~~ 145 (632)
+ |++-|....++.+.
T Consensus 85 ~-fivsp~~~~~v~~~ 99 (206)
T PRK09140 85 R-LIVTPNTDPEVIRR 99 (206)
T ss_pred C-EEECCCCCHHHHHH
Confidence 6 66668555555443
No 226
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=39.59 E-value=2e+02 Score=31.05 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=53.7
Q ss_pred HHHHhCCCeE-EEEcCHHHHHHHHHHcCCCceEEEEec-CCC-----CC-CHHHHHHHHhccCCCcEEEEecCCCHHHHH
Q 006774 51 QMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV-HMP-----DM-DGFKLLEHIGLEMDLPVIMMSADGRVSAVM 122 (632)
Q Consensus 51 ~lL~~~gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi-~MP-----dm-dGleLL~~Lr~~~~iPIIILSa~~d~e~~~ 122 (632)
+.+...+..+ ..+.+.++|...++. .+|.|++-= .-. +. +-+.|+..++...++|||.=-+-.+...+.
T Consensus 130 ~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~ia 206 (330)
T PF03060_consen 130 ERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIA 206 (330)
T ss_dssp HHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHH
T ss_pred HHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHH
Confidence 4455556554 488999999887654 389888762 221 12 246777788776779999988888888899
Q ss_pred HHHhcCCcEEEeC
Q 006774 123 RGIRHGACDYLIK 135 (632)
Q Consensus 123 eAl~~GA~DYL~K 135 (632)
.++..||++...=
T Consensus 207 aal~lGA~gV~~G 219 (330)
T PF03060_consen 207 AALALGADGVQMG 219 (330)
T ss_dssp HHHHCT-SEEEES
T ss_pred HHHHcCCCEeecC
Confidence 9999999998764
No 227
>PRK14098 glycogen synthase; Provisional
Probab=39.59 E-value=3.4e+02 Score=30.89 Aligned_cols=112 Identities=9% Similarity=0.079 Sum_probs=62.3
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCeEE--EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006774 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~-~ir~~L~~lL~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPI 109 (632)
.++++|+.+-+ ...+.++.+.++..-.|. ..-+..++.+++.. .|+.++=-. .+.-|+..++.++ ..+|+
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS~-~E~~Gl~~lEAma--~G~pp 408 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPGK-IESCGMLQMFAMS--YGTIP 408 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCCC-CCCchHHHHHHHh--CCCCe
Confidence 46777777643 345566666655432332 22344444444432 577775322 2344666666553 34555
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
|+.....-.+.+.+....+..+|+..|.+.++|..++.+++.
T Consensus 409 Vv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 409 VAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred EEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 544322222222222234678999999999999999988764
No 228
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=39.38 E-value=1.4e+02 Score=31.57 Aligned_cols=94 Identities=14% Similarity=0.066 Sum_probs=57.0
Q ss_pred EEEEeCCHHHHHH------HHHHHHhC--CCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CC
Q 006774 36 VLVVDDDITCLRI------LEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MD 106 (632)
Q Consensus 36 VLIVDDd~~ir~~------L~~lL~~~--gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~-~~ 106 (632)
|||-|++...... ++..-+.. ......+.+.+++.+.+.. ..|.|.+|-..|. +--++++.++.. ++
T Consensus 155 vlikdnH~~~~g~~~~~~av~~~R~~~~~~~IgVev~t~eea~~A~~~---gaD~I~ld~~~p~-~l~~~~~~~~~~~~~ 230 (272)
T cd01573 155 ILVFAEHRAFLGGPEPLKALARLRATAPEKKIVVEVDSLEEALAAAEA---GADILQLDKFSPE-ELAELVPKLRSLAPP 230 (272)
T ss_pred eEeehhHHHHhCCchHHHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHHhccCCC
Confidence 8888877443322 22211111 1234578899999887743 4899999954443 222344445433 46
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+|+++.- --+.+.+.+..+.|++.+..
T Consensus 231 i~i~AsG-GI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 231 VLLAAAG-GINIENAAAYAAAGADILVT 257 (272)
T ss_pred ceEEEEC-CCCHHHHHHHHHcCCcEEEE
Confidence 7766544 45677888889999987743
No 229
>PLN02591 tryptophan synthase
Probab=39.09 E-value=4.8e+02 Score=27.37 Aligned_cols=100 Identities=12% Similarity=0.024 Sum_probs=63.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEE--cC-HHHHHHHHHHcCCCceEEEE-ec-CCCC------CCHHHHHHHHhc
Q 006774 35 RVLVVDDDITCLRILEQMLRRCLYNVTTC--SQ-AAVALDILRERKGCFDVVLS-DV-HMPD------MDGFKLLEHIGL 103 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~~gy~V~~a--~s-g~eALe~L~e~~~~pDLVIL-Di-~MPd------mdGleLL~~Lr~ 103 (632)
-|+|.|-...-...+...+++.+...+.+ .+ .++=++.+.+.. .+.|-+ -. --.+ .+-.++++++|.
T Consensus 109 GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~--~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 109 GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS--EGFVYLVSSTGVTGARASVSGRVESLLQELKE 186 (250)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC--CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh
Confidence 36777766666777777788877665432 22 233344444433 233321 21 1111 123456788887
Q ss_pred cCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 104 ~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
..++||++=.+-.+.+.+.++.+.|||+.+.-.
T Consensus 187 ~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 187 VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 789999987777788899999999999999874
No 230
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=38.99 E-value=4e+02 Score=26.62 Aligned_cols=69 Identities=12% Similarity=0.198 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 65 QAAVALDILRERKGCFDVVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~MPdm---dGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+..+..+.+.+.. .=.+++.|+..-+. .-++++++++....+|||.-.+-.+.+.+.++++.|+++.+.
T Consensus 147 ~~~~~~~~~~~~g-a~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEELG-VKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHHcC-CCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 3445555555432 12466777644321 236888888776789999988888888888999999999765
No 231
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=38.49 E-value=71 Score=36.14 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=48.3
Q ss_pred CcEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEc---CH----HHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006774 33 GLRVLVVDDDITCL---RILEQMLRRCLYNVTTCS---QA----AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 33 glrVLIVDDd~~ir---~~L~~lL~~~gy~V~~a~---sg----~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr 102 (632)
+.+|+||+-|+.-. +.++.+-+..+..+.... +. .++++.++.. .+|+||+|.-=-...--++++++.
T Consensus 128 G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~--~~DvViIDTaGr~~~d~~lm~El~ 205 (429)
T TIGR01425 128 GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKE--NFDIIIVDTSGRHKQEDSLFEEML 205 (429)
T ss_pred CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhC--CCCEEEEECCCCCcchHHHHHHHH
Confidence 57999999886332 233333333444444333 22 2355555543 489999997421111223445443
Q ss_pred c-----cCCCcEEEEecCCC--HHHHHHHHh--cCCcEEE
Q 006774 103 L-----EMDLPVIMMSADGR--VSAVMRGIR--HGACDYL 133 (632)
Q Consensus 103 ~-----~~~iPIIILSa~~d--~e~~~eAl~--~GA~DYL 133 (632)
. .++-.++++.+... .....+++. .+..+.+
T Consensus 206 ~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~I 245 (429)
T TIGR01425 206 QVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVI 245 (429)
T ss_pred HHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEE
Confidence 1 23334555544332 222345553 3555554
No 232
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=38.34 E-value=3.2e+02 Score=28.06 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCCce-EEEEecCCC-CCC--HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHh-cCCcEEEe------C
Q 006774 67 AVALDILRERKGCFD-VVLSDVHMP-DMD--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR-HGACDYLI------K 135 (632)
Q Consensus 67 ~eALe~L~e~~~~pD-LVILDi~MP-dmd--GleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~-~GA~DYL~------K 135 (632)
.+..+.+.+. .++ +++.|+.-. .+. -++++++++....+|||.-.+-.+.+...++++ .|+++.+. .
T Consensus 156 ~~~~~~~~~~--g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 156 VEWAKEVEEL--GAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HHHHHHHHHc--CCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 3444444433 254 677665421 112 267788887667899999888888888889887 49988766 2
Q ss_pred CCCHHHHHHHH
Q 006774 136 PIREEELKNIW 146 (632)
Q Consensus 136 P~~~eeL~~~L 146 (632)
-++..+++..+
T Consensus 234 ~~~~~~~~~~~ 244 (253)
T PRK02083 234 EITIGELKAYL 244 (253)
T ss_pred CCCHHHHHHHH
Confidence 35556655444
No 233
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=38.32 E-value=41 Score=33.09 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=46.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecC-C-CCCC--HHHHHHHHhccCCCcEEE
Q 006774 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH-M-PDMD--GFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 36 VLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~-M-Pdmd--GleLL~~Lr~~~~iPIII 111 (632)
|||||.....-..|..+|+..++++....+..--++.+... .||.||+.=- | |..+ -..+++.+ ...+||+=
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iilsgGP~~~~~~~~~~~~i~~~--~~~~PiLG 77 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQL--APSHLVISPGPCTPNEAGISLAVIRHF--ADKLPILG 77 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEcCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 89999999999999999999888887766543222334333 3787777421 1 1122 23444443 34688887
Q ss_pred Ee
Q 006774 112 MS 113 (632)
Q Consensus 112 LS 113 (632)
+.
T Consensus 78 IC 79 (191)
T PRK06774 78 VC 79 (191)
T ss_pred EC
Confidence 65
No 234
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=38.01 E-value=2.7e+02 Score=29.95 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=38.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEE--EE---cCHHHHHHHHHHcCCCceEEEEe
Q 006774 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVT--TC---SQAAVALDILRERKGCFDVVLSD 86 (632)
Q Consensus 29 ~~p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~--~a---~sg~eALe~L~e~~~~pDLVILD 86 (632)
.|...-|||=+|-|+..++....+-++.+..+. .+ .-++...+++.+.+ ||++++-
T Consensus 101 ~F~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlViT 161 (287)
T PF05582_consen 101 YFERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYR--PDILVIT 161 (287)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcC--CCEEEEe
Confidence 344455899999999988887777777765543 22 23344556666655 9988874
No 235
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=38.01 E-value=1.8e+02 Score=29.68 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 65 QAAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~MPdm-dG--leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+..+..+.+.... ..+|++|+.--++ .| +++++++.....+|+|+--+-.+.+.+.++.+.||+..+.-
T Consensus 142 ~~~~~~~~~~~~g--~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~vivg 213 (221)
T TIGR00734 142 SLEEVRDFLNSFD--YGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLVA 213 (221)
T ss_pred cHHHHHHHHHhcC--CEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEh
Confidence 4445555554432 4799999976543 33 78899997777899998888888888888889999988753
No 236
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.93 E-value=2.5e+02 Score=30.28 Aligned_cols=91 Identities=13% Similarity=-0.011 Sum_probs=57.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHh---C-C-C-eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006774 35 RVLVVDDDITCLRILEQMLRR---C-L-Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~---~-g-y-~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iP 108 (632)
.|||=|.|-...-.+...++. . . . ..+.+++.+++.+.+.. .+|+|++|- |+..+--+.++.++ .-.
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDn-mspe~l~~av~~~~---~~~ 250 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDN-FTLDMMREAVRVTA---GRA 250 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHhhc---CCe
Confidence 478888776555444444432 1 1 2 23578899999998864 389999994 33222223333332 223
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEE
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DY 132 (632)
++-.|+.-..+.+.+..+.|+|-.
T Consensus 251 ~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 251 VLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEE
Confidence 566777788888888888898743
No 237
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=37.88 E-value=2.4e+02 Score=26.37 Aligned_cols=56 Identities=18% Similarity=0.019 Sum_probs=39.7
Q ss_pred CceEEEEecCCCCCCH-------HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 79 CFDVVLSDVHMPDMDG-------FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 79 ~pDLVILDi~MPdmdG-------leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
..|.|.++-..+...+ ...+..++....+||+...+-...+.+.++++.||+.+..
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 3788888876664322 2344455556789999888777768888999999987753
No 238
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=37.74 E-value=3.1e+02 Score=30.79 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=58.5
Q ss_pred cEEEEEeCC---HHHHHHHHHHHHhCCC--eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006774 34 LRVLVVDDD---ITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 34 lrVLIVDDd---~~ir~~L~~lL~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iP 108 (632)
++++|+.+. +...+.++.+++..+. .|.... ..+..+++. ..|++++-.. .+.-|+.+++.+. ..+|
T Consensus 325 ~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~----~aDv~vlpS~-~Eg~p~~vlEAma--~G~P 396 (475)
T cd03813 325 AEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLP----KLDVLVLTSI-SEGQPLVILEAMA--AGIP 396 (475)
T ss_pred eEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHH----hCCEEEeCch-hhcCChHHHHHHH--cCCC
Confidence 455555432 3344445555544432 222222 223333332 1577666433 2233556666653 4678
Q ss_pred EEEEecCCCHHHHHHHHhc------CCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 109 VIMMSADGRVSAVMRGIRH------GACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~------GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
||. |.... ..+.+.. |..+++..|-+.++|.+++.+++.
T Consensus 397 VVa-td~g~---~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 397 VVA-TDVGS---CRELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred EEE-CCCCC---hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 876 43332 3344444 678999999999999999988764
No 239
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=37.59 E-value=1.4e+02 Score=29.20 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCCCC-------HHHHHHHHhcc-----CCCcEEEEecCCCHHHHHHHHhcCCcEE
Q 006774 65 QAAVALDILRERKGCFDVVLSDVHMPDMD-------GFKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~MPdmd-------GleLL~~Lr~~-----~~iPIIILSa~~d~e~~~eAl~~GA~DY 132 (632)
+..+.++.+.. .+|.|+++-.-|+.. +++.+++++.. +.+||++..+ -..+.+.++++.|++.+
T Consensus 115 t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GG-I~~env~~l~~~gad~i 190 (210)
T TIGR01163 115 TPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGG-VNDDNARELAEAGADIL 190 (210)
T ss_pred CCHHHHHHHHh---hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECC-cCHHHHHHHHHcCCCEE
Confidence 34555554432 257777765444333 33444445321 2356654443 45677888889999988
Q ss_pred EeCC
Q 006774 133 LIKP 136 (632)
Q Consensus 133 L~KP 136 (632)
+.-.
T Consensus 191 ivgs 194 (210)
T TIGR01163 191 VAGS 194 (210)
T ss_pred EECh
Confidence 6653
No 240
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.48 E-value=1.9e+02 Score=31.01 Aligned_cols=90 Identities=17% Similarity=0.044 Sum_probs=55.7
Q ss_pred EEEEeCCHHHHHHHHHHHH----hCC--C-eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006774 36 VLVVDDDITCLRILEQMLR----RCL--Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 36 VLIVDDd~~ir~~L~~lL~----~~g--y-~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iP 108 (632)
|||=|.|-...-.+...++ ... . ..+.+.+.+++.+.+.. .+|+|++|- | +--++-+.+.......
T Consensus 167 vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~---gaDiI~LDn-~---s~e~l~~av~~~~~~~ 239 (281)
T PRK06106 167 VLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALEL---GVDAVLLDN-M---TPDTLREAVAIVAGRA 239 (281)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHc---CCCEEEeCC-C---CHHHHHHHHHHhCCCc
Confidence 6766666444433444443 222 2 33578999999999864 389999994 3 3233333332222222
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEE
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DY 132 (632)
++..|+.-+.+.+.+..+.|+|-.
T Consensus 240 ~leaSGGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 240 ITEASGRITPETAPAIAASGVDLI 263 (281)
T ss_pred eEEEECCCCHHHHHHHHhcCCCEE
Confidence 377788888888888888998744
No 241
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=37.18 E-value=2.7e+02 Score=27.75 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=44.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe--CCCCHHHHHHHHHHH
Q 006774 82 VVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI--KPIREEELKNIWQHV 149 (632)
Q Consensus 82 LVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~--KP~~~eeL~~~L~~v 149 (632)
|-++|...--...++.++.++...++||++...-.+...+..+++.||+..+. .-+..+++...++..
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 44455444444567788888766789999765445555788899999999873 224445555555544
No 242
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.52 E-value=2.8e+02 Score=29.90 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=58.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CCC---eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006774 35 RVLVVDDDITCLRILEQMLRR----CLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~----~gy---~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~i 107 (632)
-|||-|.|-.....+...++. ..+ ..+.+.+.+++.+.+.. .+|+|++|= |.-.+--+.++.++. -
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDn-mspe~l~~av~~~~~---~ 241 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDN-MSLEQIEQAITLIAG---R 241 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHHhcC---c
Confidence 488888886655445454443 232 23578999999998864 389999994 332223333333332 2
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEE
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DY 132 (632)
.++-.|+.-..+.+.+....|+|-.
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 3566777888888888888898743
No 243
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=36.34 E-value=3.6e+02 Score=26.66 Aligned_cols=68 Identities=19% Similarity=0.102 Sum_probs=43.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCe--E-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006774 35 RVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~~gy~--V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr 102 (632)
+|..||.++...+.++..++..++. + ....+..+++..+......+|+|++|-=.....-.++++.+.
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~ 144 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCE 144 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHH
Confidence 7999999999999999988876543 2 244555555544322222379999996443333445566553
No 244
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=36.21 E-value=1e+02 Score=31.16 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=43.7
Q ss_pred EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCC
Q 006774 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (632)
Q Consensus 60 V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~ 138 (632)
|....+.+++++.++... .-.+=++.+.+-.-+.++.++.++. .+++ +|=.-.--+.+.+.+|+++||. |+.-|.-
T Consensus 13 Vir~~~~~~a~~~~~al~-~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~~aGA~-FivSP~~ 89 (196)
T PF01081_consen 13 VIRGDDPEDAVPIAEALI-EGGIRAIEITLRTPNALEAIEALRKEFPDL-LVGAGTVLTAEQAEAAIAAGAQ-FIVSPGF 89 (196)
T ss_dssp EETTSSGGGHHHHHHHHH-HTT--EEEEETTSTTHHHHHHHHHHHHTTS-EEEEES--SHHHHHHHHHHT-S-EEEESS-
T ss_pred EEEcCCHHHHHHHHHHHH-HCCCCEEEEecCCccHHHHHHHHHHHCCCC-eeEEEeccCHHHHHHHHHcCCC-EEECCCC
Confidence 334445555555443210 0123356666666788899888864 3442 2333444577888999999997 6666744
Q ss_pred HHHHH
Q 006774 139 EEELK 143 (632)
Q Consensus 139 ~eeL~ 143 (632)
.+++.
T Consensus 90 ~~~v~ 94 (196)
T PF01081_consen 90 DPEVI 94 (196)
T ss_dssp -HHHH
T ss_pred CHHHH
Confidence 44443
No 245
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=36.07 E-value=79 Score=33.12 Aligned_cols=80 Identities=23% Similarity=0.248 Sum_probs=49.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEc-------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHH----------
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHMPDMDGFK---------- 96 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~-------sg~eALe~L~e~~~~pDLVILDi~MPdmdGle---------- 96 (632)
|||||+...-.+-..|...|...++++.... +.++..+.+...+ ||+||-=.-+.+.+..|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~--pd~Vin~aa~~~~~~ce~~p~~a~~iN 78 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFK--PDVVINCAAYTNVDACEKNPEEAYAIN 78 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE------HHHHHHSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhC--CCeEeccceeecHHhhhhChhhhHHHh
Confidence 7999999999999999999998888887653 5555566666654 99887655443322211
Q ss_pred -----HHHHHhccCCCcEEEEecC
Q 006774 97 -----LLEHIGLEMDLPVIMMSAD 115 (632)
Q Consensus 97 -----LL~~Lr~~~~iPIIILSa~ 115 (632)
.+.++-....+++|.+|+.
T Consensus 79 ~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 79 VDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp THHHHHHHHHHHHCT-EEEEEEEG
T ss_pred hHHHHHHHHHHHHcCCcEEEeecc
Confidence 1111112457899998874
No 246
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=35.81 E-value=3.6e+02 Score=24.90 Aligned_cols=109 Identities=19% Similarity=0.266 Sum_probs=65.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEcC--HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQ--AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy--~V~~a~s--g~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iP 108 (632)
.++++|+.+.... ..+.......+. .+..... .++..++++. .|++++=... +.-|..+++.+. ..+|
T Consensus 47 ~~~l~i~G~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~--~g~p 118 (172)
T PF00534_consen 47 NYKLVIVGDGEYK-KELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA--CGCP 118 (172)
T ss_dssp TEEEEEESHCCHH-HHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH--TT-E
T ss_pred CeEEEEEcccccc-ccccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc--cccc
Confidence 4678888743332 234444444332 3333333 3455666654 4777765444 445667777664 4566
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+|+ +.. ....+.+..+..+++..+.+.+++...+.+++...
T Consensus 119 vI~-~~~---~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 119 VIA-SDI---GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EEE-ESS---THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred eee-ccc---cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 664 332 23456677888999999999999999999988643
No 247
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=35.43 E-value=3.4e+02 Score=28.22 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=42.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 80 pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.|++++=.. .+.-|+-+++.+. ..+|+|.. .... ..+.+..|..+|+.+|-+.+++.+.+..++.
T Consensus 271 ~d~~v~ps~-~E~~~~~~~EAma--~g~PvI~s-~~~~---~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 271 ADLFLLPSE-KESFGLAALEAMA--CGVPVVAS-NAGG---IPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred cCEEEeCCC-cCCCccHHHHHHH--cCCCEEEe-CCCC---chhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 466655332 2333556666653 45788763 2222 3456777889999999999999988887653
No 248
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=35.39 E-value=1.7e+02 Score=32.33 Aligned_cols=57 Identities=14% Similarity=-0.043 Sum_probs=39.9
Q ss_pred CceEEEEecCCCCC-CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 79 CFDVVLSDVHMPDM-DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 79 ~pDLVILDi~MPdm-dGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
.+|+|++|+--... .-++.+++||....-+.|+--.-...+.+..++++||+....-
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 58999999854432 3567888887643333443333667788889999999988654
No 249
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=35.05 E-value=2.4e+02 Score=30.59 Aligned_cols=98 Identities=14% Similarity=0.039 Sum_probs=57.2
Q ss_pred EEEEEeCCHHHHHHHHHHHH-------hCCC---eEEEEcCHHHHHHHHHH---cCCCceEEEEecC--CCC---CCHHH
Q 006774 35 RVLVVDDDITCLRILEQMLR-------RCLY---NVTTCSQAAVALDILRE---RKGCFDVVLSDVH--MPD---MDGFK 96 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~-------~~gy---~V~~a~sg~eALe~L~e---~~~~pDLVILDi~--MPd---mdGle 96 (632)
-|||=|.+-...-.+...++ ...+ ..+.+.+.+++.+.+.- .+..+|+|++|-. -|+ .+--+
T Consensus 172 ~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~ 251 (308)
T PLN02716 172 MVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSM 251 (308)
T ss_pred eEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHH
Confidence 37877777554433333322 2222 23578899999998861 1124899999953 121 13333
Q ss_pred HHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEE
Q 006774 97 LLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 97 LL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DY 132 (632)
+.+.+........|-.|+.-..+.+.+....|+|-.
T Consensus 252 l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 252 LKEAVELINGRFETEASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred HHHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 333333222223466788888888888888898743
No 250
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=34.57 E-value=13 Score=37.29 Aligned_cols=37 Identities=11% Similarity=-0.049 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCcc
Q 006774 265 ASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 265 aSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
-.|+.||...+..| |..++++.+. .+.|..|||+.|.
T Consensus 19 ~~H~l~V~~~A~~L---A~~y~~d~~k---A~~AgilHD~aK~ 55 (187)
T COG1713 19 FEHCLGVAETAIEL---AEAYGLDPEK---AYLAGILHDIAKE 55 (187)
T ss_pred HHHHHHHHHHHHHH---HHHhCCCHHH---HHHHHHHHHHHhh
Confidence 46999999999999 9999988765 5667889999997
No 251
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=34.08 E-value=3e+02 Score=29.05 Aligned_cols=115 Identities=20% Similarity=0.217 Sum_probs=72.2
Q ss_pred CcEEEEEeCCHHH----HHH--HHHHHHhCCCeEEEEc--CHHHHHHHHHHcCCCceEEEEecCCCCCCHH-----HHHH
Q 006774 33 GLRVLVVDDDITC----LRI--LEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGF-----KLLE 99 (632)
Q Consensus 33 glrVLIVDDd~~i----r~~--L~~lL~~~gy~V~~a~--sg~eALe~L~e~~~~pDLVILDi~MPdmdGl-----eLL~ 99 (632)
.+|+=|+-|+... .+. -.+.|-+.||.|.... |.--|.++ ++.. -..++-+--|-.+|. ..++
T Consensus 100 wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrL-ee~G---caavMPl~aPIGSg~G~~n~~~l~ 175 (262)
T COG2022 100 WIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRL-EEAG---CAAVMPLGAPIGSGLGLQNPYNLE 175 (262)
T ss_pred eEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHH-HhcC---ceEeccccccccCCcCcCCHHHHH
Confidence 4677677665322 222 2234555699987544 34444333 3321 345555555644443 4566
Q ss_pred HHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC-----CCHHHHHHHHHHHHH
Q 006774 100 HIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP-----IREEELKNIWQHVVR 151 (632)
Q Consensus 100 ~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP-----~~~eeL~~~L~~vlr 151 (632)
.|..+.++|||+=.+-.....+..+++.|+|..|.-. -++-.+.++...++.
T Consensus 176 iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 176 IIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred HHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 6777779999999999999999999999999998754 345555555555543
No 252
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=34.02 E-value=2e+02 Score=33.71 Aligned_cols=94 Identities=14% Similarity=0.197 Sum_probs=51.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcC-HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~s-g~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
+..++++|.|+...+.++ +.++.+...+- -.+.++...- .+.|++++-..-+ .+-..++..+|+ .++++||
T Consensus 423 g~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~agi--~~A~~vv~~~~d~-~~n~~i~~~~r~~~p~~~Ii 495 (601)
T PRK03659 423 KMRITVLERDISAVNLMR----KYGYKVYYGDATQLELLRAAGA--EKAEAIVITCNEP-EDTMKIVELCQQHFPHLHIL 495 (601)
T ss_pred CCCEEEEECCHHHHHHHH----hCCCeEEEeeCCCHHHHHhcCC--ccCCEEEEEeCCH-HHHHHHHHHHHHHCCCCeEE
Confidence 456777777765444332 34555543321 2223332221 2356666654322 233455566653 5788888
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
..+. +.+...+..+.||+..+.-
T Consensus 496 aRa~--~~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 496 ARAR--GRVEAHELLQAGVTQFSRE 518 (601)
T ss_pred EEeC--CHHHHHHHHhCCCCEEEcc
Confidence 8765 4455667778999977743
No 253
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=34.00 E-value=23 Score=43.19 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCccee
Q 006774 264 VASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 264 taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (632)
+..|+..+...++.+ |...|+ .......+.|.-|||+||+.-
T Consensus 676 L~eHl~~va~lA~~f---a~~~gl-~~~~~~~~laGllHDlGK~~~ 717 (844)
T TIGR02621 676 LSDHLDNVFEVAKNF---VAKLGL-GDLDKAVRQAARLHDLGKQRP 717 (844)
T ss_pred HHHHHHHHHHHHHHH---HHHcCc-hHHHHHHHHHHHhcccccCCH
Confidence 889999999999999 888887 333333456778999999974
No 254
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=33.89 E-value=3.2e+02 Score=23.85 Aligned_cols=93 Identities=17% Similarity=0.077 Sum_probs=54.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCH-HHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQA-AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg-~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
+.+|++||.++...+.+ ...++.+....-. .+.++.+.-. ..+.||+...- +..-+.++..++. .+..+||
T Consensus 21 ~~~vvvid~d~~~~~~~----~~~~~~~i~gd~~~~~~l~~a~i~--~a~~vv~~~~~-d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 21 GIDVVVIDRDPERVEEL----REEGVEVIYGDATDPEVLERAGIE--KADAVVILTDD-DEENLLIALLARELNPDIRII 93 (116)
T ss_dssp TSEEEEEESSHHHHHHH----HHTTSEEEES-TTSHHHHHHTTGG--CESEEEEESSS-HHHHHHHHHHHHHHTTTSEEE
T ss_pred CCEEEEEECCcHHHHHH----HhcccccccccchhhhHHhhcCcc--ccCEEEEccCC-HHHHHHHHHHHHHHCCCCeEE
Confidence 36899999998764433 3445666543322 2344443323 47888887542 2334556666664 5677888
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEe
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+... +.+........|++..+.
T Consensus 94 ~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 94 ARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp EEES--SHHHHHHHHHTT-SEEEE
T ss_pred EEEC--CHHHHHHHHHCCcCEEEC
Confidence 7664 344455556789986653
No 255
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=33.80 E-value=3.6e+02 Score=29.92 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=45.7
Q ss_pred ceEEEEecCCCCCCHHH-HHHHHhccCCCcEEEEec-CCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 80 FDVVLSDVHMPDMDGFK-LLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 80 pDLVILDi~MPdmdGle-LL~~Lr~~~~iPIIILSa-~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.+.+|++..-+..=-+| ++..+. .....||.... ..+......+++.|+++.+.+|-++.++++....+-+
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~-~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQ-GSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhc-CCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 56666665443322233 444443 23455555443 3445567788899999999999999999887766543
No 256
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=33.57 E-value=4.7e+02 Score=27.78 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=38.1
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 94 GleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
|+-+++.+. ..+|||..-.... ..+.+..|.++++..|-+.++|.+++..++..
T Consensus 271 ~~~~lEAma--~G~Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 271 PMTLLEAMS--YGIPCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISG 324 (359)
T ss_pred ChHHHHHHH--cCCCEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhC
Confidence 556666653 4678875321232 33567778999999999999999999988754
No 257
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.54 E-value=5e+02 Score=26.68 Aligned_cols=88 Identities=6% Similarity=-0.017 Sum_probs=51.3
Q ss_pred HHHHHHHHHhCCCeEEEEcCH---HHHHHHHHHcCCCceEEEEecCCCCC------CHHHHHHHHhccC-CCcEEEEecC
Q 006774 46 LRILEQMLRRCLYNVTTCSQA---AVALDILRERKGCFDVVLSDVHMPDM------DGFKLLEHIGLEM-DLPVIMMSAD 115 (632)
Q Consensus 46 r~~L~~lL~~~gy~V~~a~sg---~eALe~L~e~~~~pDLVILDi~MPdm------dGleLL~~Lr~~~-~iPIIILSa~ 115 (632)
...+...+++.|..+..+-+. .+.++.+.... ..++++ -..|+. +-.+.++++|... ..||++=.+-
T Consensus 118 ~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~--~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI 194 (244)
T PRK13125 118 LEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS--PLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGL 194 (244)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC--CCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCc
Confidence 345556667777765543332 33444333332 567767 445542 1234566666433 4676544444
Q ss_pred CCHHHHHHHHhcCCcEEEeCC
Q 006774 116 GRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 116 ~d~e~~~eAl~~GA~DYL~KP 136 (632)
.+.+.+.++.++||+.++.-.
T Consensus 195 ~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 195 DSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred CCHHHHHHHHHcCCCEEEECH
Confidence 477788888899999999864
No 258
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=33.49 E-value=3.1e+02 Score=30.00 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=42.5
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEEc---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHH
Q 006774 34 LRVLVVDDDITCL-----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (632)
Q Consensus 34 lrVLIVDDd~~ir-----~~L~~lL~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~ 99 (632)
-|+|||-|..... +.+...|+..++++..+. +..++.+.+++.. +|+||- ..+.+-+++.+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFE--PDWIIA---LGGGSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCccHHHHHH
Confidence 4799998876544 567788887777665543 2556677777654 898875 45666666666
Q ss_pred HH
Q 006774 100 HI 101 (632)
Q Consensus 100 ~L 101 (632)
.+
T Consensus 99 ~i 100 (375)
T cd08179 99 AM 100 (375)
T ss_pred HH
Confidence 65
No 259
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=33.33 E-value=4.4e+02 Score=26.78 Aligned_cols=101 Identities=18% Similarity=0.236 Sum_probs=60.3
Q ss_pred CCcEEEEEeCCH----HHHHHHHHHHHhCCC-eEEEEcCHHHHHHHHHHcCCCceEEEEecC------CCCCCHHHHHHH
Q 006774 32 AGLRVLVVDDDI----TCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEH 100 (632)
Q Consensus 32 ~glrVLIVDDd~----~ir~~L~~lL~~~gy-~V~~a~sg~eALe~L~e~~~~pDLVILDi~------MPdmdGleLL~~ 100 (632)
.|..|+-+|--. .....+-..++..+. -.--+.+.+|++...+. .+|+|=.=+. ..+..-++|+++
T Consensus 63 aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~ 139 (192)
T PF04131_consen 63 AGADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVRE 139 (192)
T ss_dssp CT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHH
T ss_pred cCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHH
Confidence 345677777432 222333333444332 23368899999987754 3898765431 112346899999
Q ss_pred HhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 101 IGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 101 Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
|... .+|||.=-...+.+.+.++++.||+..+.=.
T Consensus 140 l~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 140 LVQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVGS 174 (192)
T ss_dssp HHHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-H
T ss_pred HHhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEECc
Confidence 9754 8898887778889999999999999988754
No 260
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=33.17 E-value=1.8e+02 Score=28.28 Aligned_cols=84 Identities=21% Similarity=0.237 Sum_probs=46.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCe---------------EEEEcCHHHHHHHHHHc--CCCceEEEEec-CCCCCC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYN---------------VTTCSQAAVALDILRER--KGCFDVVLSDV-HMPDMD 93 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~---------------V~~a~sg~eALe~L~e~--~~~pDLVILDi-~MPdmd 93 (632)
+++||||+..-..+.+.+.+.|+...+. +.... .......+... ...+|+||+|- +.-|-.
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc-~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~ 110 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMC-HATYGHFLLNPCRLKNYDVIIMDECHFTDPT 110 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEE-HHHHHHHHHTSSCTTS-SEEEECTTT--SHH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccc-cHHHHHHhcCcccccCccEEEEeccccCCHH
Confidence 5789999999999999999999875322 22222 22333333321 12489999993 443322
Q ss_pred HHHH---HHHHhccCCCcEEEEecCC
Q 006774 94 GFKL---LEHIGLEMDLPVIMMSADG 116 (632)
Q Consensus 94 GleL---L~~Lr~~~~iPIIILSa~~ 116 (632)
.+.+ ++.+.......+|++|+.+
T Consensus 111 sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 111 SIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred HHhhheeHHHhhhccCeeEEEEeCCC
Confidence 3333 3333333456799998865
No 261
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=32.87 E-value=5.3e+02 Score=28.63 Aligned_cols=78 Identities=18% Similarity=0.100 Sum_probs=51.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH-HhccCCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH-IGLEMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~-V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~-Lr~~~~iPII 110 (632)
.+|..+|-++...+.++..++..+.. + ....+..+.+ .. ...||+|++|- | ..+.+++.. ++....-.+|
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l---~~-~~~fD~V~lDP--~-Gs~~~~l~~al~~~~~~gil 154 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL---HE-ERKFDVVDIDP--F-GSPAPFLDSAIRSVKRGGLL 154 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH---hh-cCCCCEEEECC--C-CCcHHHHHHHHHHhcCCCEE
Confidence 47999999999999999988765543 2 3444554443 21 22599999995 4 334566665 5544445688
Q ss_pred EEecCCCH
Q 006774 111 MMSADGRV 118 (632)
Q Consensus 111 ILSa~~d~ 118 (632)
.+|+.+..
T Consensus 155 yvSAtD~~ 162 (382)
T PRK04338 155 CVTATDTA 162 (382)
T ss_pred EEEecCch
Confidence 88876543
No 262
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.84 E-value=3.8e+02 Score=28.68 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=57.2
Q ss_pred cEEEEEe--CCHHHH---HHHHHHHHhCCCeEEEEcCHHHHHHH-------------HHHcCCCceEEEEecCCCCCCHH
Q 006774 34 LRVLVVD--DDITCL---RILEQMLRRCLYNVTTCSQAAVALDI-------------LRERKGCFDVVLSDVHMPDMDGF 95 (632)
Q Consensus 34 lrVLIVD--Dd~~ir---~~L~~lL~~~gy~V~~a~sg~eALe~-------------L~e~~~~pDLVILDi~MPdmdGl 95 (632)
|+|.|+- +.+... ..+...|+..++++.........+.. .......+|+||+ -+.||.
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcHH
Confidence 4666662 223333 44555566668877765433222210 0111113677766 366773
Q ss_pred HHHHHHh--ccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 96 KLLEHIG--LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 96 eLL~~Lr--~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
+++..+ ....+||+-+- .|-.+||. .++++++...+.++++...
T Consensus 77 -~L~aa~~~~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 77 -FLRTATYVGNSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGDY 122 (292)
T ss_pred -HHHHHHHhcCCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCCc
Confidence 333333 23478888654 35567776 5778999999999987653
No 263
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=32.73 E-value=6e+02 Score=26.59 Aligned_cols=105 Identities=13% Similarity=0.107 Sum_probs=56.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC--CeEEEE--cCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~g--y~V~~a--~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iP 108 (632)
.+||.||.-...........+...+ +.+... .+.+.|.+...+.. +.-+..| .+.+-..+++-
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~--~~~~~~~-----------~~~ll~~~~iD 69 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG--IAKAYTD-----------LEELLADPDID 69 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC--CCcccCC-----------HHHHhcCCCCC
Confidence 4677777766554444444444433 344333 34444444443322 1211111 12222223333
Q ss_pred EEEEe--cCCCHHHHHHHHhcCCcEEEeCC--CCHHHHHHHHHHHH
Q 006774 109 VIMMS--ADGRVSAVMRGIRHGACDYLIKP--IREEELKNIWQHVV 150 (632)
Q Consensus 109 IIILS--a~~d~e~~~eAl~~GA~DYL~KP--~~~eeL~~~L~~vl 150 (632)
+|++. .....+.+.+|+++|..=|+-|| .+.+|..+.++.+-
T Consensus 70 ~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~ 115 (342)
T COG0673 70 AVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELAR 115 (342)
T ss_pred EEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHH
Confidence 44433 34456788899999999999999 56788876665543
No 264
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=32.73 E-value=59 Score=32.02 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=26.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEc
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCS 64 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~ 64 (632)
+||||||.....-..+...|++.|+++....
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 6899999998888889999999888776655
No 265
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=32.67 E-value=1e+02 Score=29.26 Aligned_cols=53 Identities=26% Similarity=0.304 Sum_probs=28.3
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhCCCeEEEEc---CHHHH----HHHHHHcCCCceEEEEec
Q 006774 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTCS---QAAVA----LDILRERKGCFDVVLSDV 87 (632)
Q Consensus 33 glrVLIVDDd~~i---r~~L~~lL~~~gy~V~~a~---sg~eA----Le~L~e~~~~pDLVILDi 87 (632)
+.+|++||-|..- .+.+....+..+..+.... +..+. +..+.. ..+|+||+|.
T Consensus 28 g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~viiDt 90 (173)
T cd03115 28 GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE--ENFDVVIVDT 90 (173)
T ss_pred CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 5789999977532 2233333444455544432 33322 222222 2489999996
No 266
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=32.60 E-value=52 Score=35.07 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=38.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-----CeE-EEEcCHHHHHHHHHHcCCCceEEEEecCCC
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCL-----YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~g-----y~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MP 90 (632)
-+|.+||=|+.+.+.-++.|.... -.+ +...|+ .+.+++....+|+||+|..-|
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg---~~~v~~~~~~fDvIi~D~tdp 160 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG---VEFLRDCEEKFDVIIVDSTDP 160 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH---HHHHHhCCCcCCEEEEcCCCC
Confidence 379999999999999999887542 112 234444 455555544699999999877
No 267
>PRK10742 putative methyltransferase; Provisional
Probab=32.55 E-value=3.6e+02 Score=28.51 Aligned_cols=58 Identities=21% Similarity=0.167 Sum_probs=41.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC------CC----eEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRC------LY----NVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDM 92 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~------gy----~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdm 92 (632)
.|.+|..||.++.+...++.-|+.. +. .+. ...+..+.+.. ....||+|++|-..|..
T Consensus 109 ~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~---~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 109 VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRPQVVYLDPMFPHK 177 (250)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh---CCCCCcEEEECCCCCCC
Confidence 3568999999999999999999873 11 122 34455555543 33359999999988863
No 268
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=32.45 E-value=2.2e+02 Score=29.56 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=60.3
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEE-----Ec--CHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhccC-CC
Q 006774 38 VVDDDITCLRILEQMLRRCLYNVTT-----CS--QAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLEM-DL 107 (632)
Q Consensus 38 IVDDd~~ir~~L~~lL~~~gy~V~~-----a~--sg~eALe~L~e~~~~pDLVILDi~MPdm--dGleLL~~Lr~~~-~i 107 (632)
+..|...+.+.++.+- ..+..|.. .. +..+..+.+.+. ..|.|.+|...++. -.++.+++++... .+
T Consensus 116 Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~a--Gad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~i 192 (231)
T TIGR00736 116 LLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVDD--GFDGIHVDAMYPGKPYADMDLLKILSEEFNDK 192 (231)
T ss_pred hcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHHc--CCCEEEEeeCCCCCchhhHHHHHHHHHhcCCC
Confidence 4445555555555554 33333321 11 122333344443 48988889766654 3588888887665 59
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
|||.--+-.+.+.+.+.+++||+....
T Consensus 193 pIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 193 IIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred cEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 999888888889999999999998754
No 269
>PLN02476 O-methyltransferase
Probab=32.40 E-value=2e+02 Score=30.62 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=41.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EEcCHHHHHHHHHHc--CCCceEEEEecC
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRER--KGCFDVVLSDVH 88 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~--V~-~a~sg~eALe~L~e~--~~~pDLVILDi~ 88 (632)
.-+|.-+|-++...+..+..++..|+. +. ...++.+.|..+... ...||+||+|..
T Consensus 143 ~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 143 SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 347999999999999999999988764 33 456666766655321 236999999975
No 270
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=32.33 E-value=2.3e+02 Score=28.78 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=51.5
Q ss_pred EcCHHHHHHHHHHcCCCce-EEEEecCCCC---CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 63 CSQAAVALDILRERKGCFD-VVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 63 a~sg~eALe~L~e~~~~pD-LVILDi~MPd---mdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
..+..+..+.+.+.. +| ++++|+.-.+ ..-++++++++....+||++--+-.+.+.+.+++..|++..+.=
T Consensus 26 ~~d~~~~a~~~~~~G--~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 26 AGDPVELAKRYNEQG--ADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHHHHHHHHCC--CCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 346667777776543 44 8888887432 12367888887767899999888888899999999998876554
No 271
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=32.31 E-value=2.9e+02 Score=30.33 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=41.0
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHHhCCCeEEEEc---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHH
Q 006774 34 LRVLVVDDDITC-----LRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (632)
Q Consensus 34 lrVLIVDDd~~i-----r~~L~~lL~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~ 99 (632)
-|+|||-|.... .+.+...|+..++++..+. +..++++.+++.. +|+||- +.+..-+++.+
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~aK 103 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEK--VDFILA---VGGGSVIDSAK 103 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCChHHHHHHH
Confidence 589988776433 3567788887777665543 3446667777654 898774 34555666666
Q ss_pred HH
Q 006774 100 HI 101 (632)
Q Consensus 100 ~L 101 (632)
.+
T Consensus 104 ~i 105 (382)
T cd08187 104 AI 105 (382)
T ss_pred HH
Confidence 55
No 272
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=32.14 E-value=57 Score=32.23 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=46.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCC--CCCCH--HHHHHHHhccCCCcEEE
Q 006774 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM--PDMDG--FKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 36 VLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~M--PdmdG--leLL~~Lr~~~~iPIII 111 (632)
|||||....+-..|..+|++.+.++..+.+.+..++.+... .||.||+-=-- |..++ .++++.+ ...+||+-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iils~GPg~p~~~~~~~~~~~~~--~~~~PiLG 77 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDAL--KPQKIVISPGPCTPDEAGISLDVIRHY--AGRLPILG 77 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCEEEEcCCCCChHHCCccHHHHHHh--cCCCCEEE
Confidence 89999999999999999998888877666543223333332 38888874311 12222 2344433 34688876
Q ss_pred Ee
Q 006774 112 MS 113 (632)
Q Consensus 112 LS 113 (632)
+.
T Consensus 78 IC 79 (187)
T PRK08007 78 VC 79 (187)
T ss_pred EC
Confidence 65
No 273
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.05 E-value=3.3e+02 Score=33.29 Aligned_cols=100 Identities=16% Similarity=0.069 Sum_probs=57.7
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCC-CCCC--HHHHHHHHh-c-cC
Q 006774 34 LRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM-PDMD--GFKLLEHIG-L-EM 105 (632)
Q Consensus 34 lrVLIVDDd~~---ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~M-Pdmd--GleLL~~Lr-~-~~ 105 (632)
.+|.+|+-|.. ..+.++.+-+..+..+..+.+..+..+.+.... ..|+||+|.-= ...+ -.+.+..+. . .+
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p 294 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRP 294 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-CCCEEEEeCCCCCccCHHHHHHHHHHhccCCC
Confidence 47888887753 235555555666777777778888777777654 57999999621 1122 233344432 1 23
Q ss_pred CCcEEEEecCCCHHHH---HHHHhc----CCcEEEe
Q 006774 106 DLPVIMMSADGRVSAV---MRGIRH----GACDYLI 134 (632)
Q Consensus 106 ~iPIIILSa~~d~e~~---~eAl~~----GA~DYL~ 134 (632)
.-.++++++....+.. .+.++. +.+++|.
T Consensus 295 ~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIl 330 (767)
T PRK14723 295 VRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCII 330 (767)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEE
Confidence 3446666665544433 344532 5666654
No 274
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=32.03 E-value=2.2e+02 Score=32.39 Aligned_cols=56 Identities=25% Similarity=0.203 Sum_probs=31.6
Q ss_pred CCcEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEc---CHHH-HHHHHHHcCCCceEEEEecC
Q 006774 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QAAV-ALDILRERKGCFDVVLSDVH 88 (632)
Q Consensus 32 ~glrVLIVDDd~~---ir~~L~~lL~~~gy~V~~a~---sg~e-ALe~L~e~~~~pDLVILDi~ 88 (632)
.+.+|++|+-|.. ..+.++.+....+..+.... +..+ +.+.++... ..|+||+|.-
T Consensus 122 ~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~-~~DvVIIDTA 184 (437)
T PRK00771 122 KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK-KADVIIVDTA 184 (437)
T ss_pred cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh-cCCEEEEECC
Confidence 3579999998853 23445555555565555432 3222 223333322 3599999974
No 275
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=31.68 E-value=68 Score=31.65 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=45.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEec-C-CCCCCH--HHHHHHHhccCCCcEEE
Q 006774 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV-H-MPDMDG--FKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 36 VLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi-~-MPdmdG--leLL~~Lr~~~~iPIII 111 (632)
|||||.....-..+.+.|+..++++....+....++.+... .||.||+-= - -|..++ .++++++ ...+||+-
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iilsgGpg~p~~~~~~~~~i~~~--~~~~PvLG 77 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEAL--LPLLIVISPGPCTPNEAGISLEAIRHF--AGKLPILG 77 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhc--CCCEEEEcCCCCChhhcchhHHHHHHh--ccCCCEEE
Confidence 89999999999999999998888877655332222333332 388666621 1 111222 3444444 34688887
Q ss_pred Ee
Q 006774 112 MS 113 (632)
Q Consensus 112 LS 113 (632)
+.
T Consensus 78 IC 79 (188)
T TIGR00566 78 VC 79 (188)
T ss_pred EC
Confidence 65
No 276
>PRK04296 thymidine kinase; Provisional
Probab=31.64 E-value=45 Score=32.92 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=41.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEE--EEcCHHHHHHHHHHcCCCceEEEEec-CCCCCC-HHHHHHHHhccCCC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDV-HMPDMD-GFKLLEHIGLEMDL 107 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi-~MPdmd-GleLL~~Lr~~~~i 107 (632)
.+.+|+++-..-..+.....++.+.+..+. ......+.++.+.+....+|+|++|= ++-+.+ -.++++.++ ...+
T Consensus 29 ~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvviIDEaq~l~~~~v~~l~~~l~-~~g~ 107 (190)
T PRK04296 29 RGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVLIDEAQFLDKEQVVQLAEVLD-DLGI 107 (190)
T ss_pred cCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEEEEccccCCHHHHHHHHHHHH-HcCC
Confidence 467888884311222223334444454332 34566777776654223589999994 332212 344555543 3455
Q ss_pred cEEEE
Q 006774 108 PVIMM 112 (632)
Q Consensus 108 PIIIL 112 (632)
.||+.
T Consensus 108 ~vi~t 112 (190)
T PRK04296 108 PVICY 112 (190)
T ss_pred eEEEE
Confidence 55544
No 277
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.25 E-value=1.4e+02 Score=34.49 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=49.2
Q ss_pred CceEEEEe-cCCCCCCHHHHH-HHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 79 CFDVVLSD-VHMPDMDGFKLL-EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 79 ~pDLVILD-i~MPdmdGleLL-~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
.+.++|+| ++|-..+.++.+ +.+ ..+...++++-+..+...+...+..-+..|-.+|++.+++...+++++..
T Consensus 121 ~~KV~IIDEah~Ls~~A~NALLKtL-EEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQSFNALLKTL-EEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred CCEEEEEechhhcCHHHHHHHHHHh-hcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHH
Confidence 46788888 566555555543 334 33444444443334455666778888888999999999999888887764
No 278
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=31.23 E-value=7.4e+02 Score=27.20 Aligned_cols=107 Identities=16% Similarity=0.210 Sum_probs=62.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEEEE--cCHHHHHHHHHHcCCCceEEEEecCCC---CCCH--HHHHHHHhcc
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLY--NVTTC--SQAAVALDILRERKGCFDVVLSDVHMP---DMDG--FKLLEHIGLE 104 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy--~V~~a--~sg~eALe~L~e~~~~pDLVILDi~MP---dmdG--leLL~~Lr~~ 104 (632)
+++.|+.|.+. ++.++..++..+. .|... -+.++..+++.. .|+.++=.... +.+| .-+++.+.
T Consensus 254 ~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma-- 326 (406)
T PRK15427 254 FRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA-- 326 (406)
T ss_pred EEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh--
Confidence 45666666543 3455555555442 23222 233455555543 47666533211 1233 45666653
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 105 ~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
..+|||.. .... ..+.+..|..+++..|-+.++|.+++..++.
T Consensus 327 ~G~PVI~t-~~~g---~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 VGIPVVST-LHSG---IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCCEEEe-CCCC---chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 46788753 2222 3466778999999999999999999988765
No 279
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=31.19 E-value=5.5e+02 Score=28.68 Aligned_cols=101 Identities=15% Similarity=0.050 Sum_probs=56.7
Q ss_pred CCcEEEEEeCCHHH---HHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCC-CCCHHH---HHHHHhc-
Q 006774 32 AGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFK---LLEHIGL- 103 (632)
Q Consensus 32 ~glrVLIVDDd~~i---r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MP-dmdGle---LL~~Lr~- 103 (632)
.+.+|.+|+-|..- .+.++.+.+..+..+..+.+..+....+... ..+|+||+|.--- ..+... +.+.+..
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSPKDFMKLAEMKELLNAC 283 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCccCHHHHHHHHHHHHhc
Confidence 35789998888632 2234444444567777777777666666554 3699999996321 123332 2222322
Q ss_pred cCC-CcEEEEecCCCHHHHHHHHh----cCCcEEE
Q 006774 104 EMD-LPVIMMSADGRVSAVMRGIR----HGACDYL 133 (632)
Q Consensus 104 ~~~-iPIIILSa~~d~e~~~eAl~----~GA~DYL 133 (632)
.+. -.++++++........+.+. .|.+.++
T Consensus 284 ~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I 318 (388)
T PRK12723 284 GRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVI 318 (388)
T ss_pred CCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 223 34667777666555554442 3455543
No 280
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.17 E-value=5.6e+02 Score=25.81 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHcCCCce-EEEEecCCC---CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 65 QAAVALDILRERKGCFD-VVLSDVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 65 sg~eALe~L~e~~~~pD-LVILDi~MP---dmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+..+..+.+.... ++ +++.|+... ..-.+++++++.....+|||+-.+-.+.+.+.+.+..||+..+.
T Consensus 150 ~~~~~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 150 TPVEAAKRFEELG--AGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVV 221 (241)
T ss_pred CHHHHHHHHHHcC--CCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4455555554432 44 666666322 12347888888766789999988888888888888999998754
No 281
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=31.01 E-value=4.3e+02 Score=25.74 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=36.2
Q ss_pred CHHHHHHHHhccCCCcEEE-EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHH
Q 006774 93 DGFKLLEHIGLEMDLPVIM-MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (632)
Q Consensus 93 dGleLL~~Lr~~~~iPIII-LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L 146 (632)
-+++.+++|+.....|+.+ +...+....+..+.+.|++..+.-....++....+
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~ 97 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLL 97 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHH
Confidence 4789999998656667533 44445566777888999998777554444444444
No 282
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=30.90 E-value=3.7e+02 Score=23.81 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=15.1
Q ss_pred EeCCHHHHHHHHHHHHhCCCeEEEEc
Q 006774 39 VDDDITCLRILEQMLRRCLYNVTTCS 64 (632)
Q Consensus 39 VDDd~~ir~~L~~lL~~~gy~V~~a~ 64 (632)
-|.+......+...|...||.+....
T Consensus 8 ~~~~k~~~~~~~~~l~~~G~~l~aT~ 33 (110)
T cd01424 8 ADRDKPEAVEIAKRLAELGFKLVATE 33 (110)
T ss_pred EcCcHhHHHHHHHHHHHCCCEEEEch
Confidence 34444444455566666788886433
No 283
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=30.54 E-value=3.6e+02 Score=30.02 Aligned_cols=88 Identities=14% Similarity=0.033 Sum_probs=50.5
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecC-CCCCCH--HHHHHHHhc--cC
Q 006774 34 LRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH-MPDMDG--FKLLEHIGL--EM 105 (632)
Q Consensus 34 lrVLIVDDd~~---ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~-MPdmdG--leLL~~Lr~--~~ 105 (632)
.+|.+|..|.. ..+.|+.+-+..+..+..+.+..+....+.+.. ..|+||+|.- +...|. .+.+..+.. .+
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~ 246 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTP 246 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCEEEEcCCCCCcccHHHHHHHHHHhccCCC
Confidence 47888877654 345566656666777777776666555555443 5799999963 222232 234444422 12
Q ss_pred CCcEEEEecCCCHHHHH
Q 006774 106 DLPVIMMSADGRVSAVM 122 (632)
Q Consensus 106 ~iPIIILSa~~d~e~~~ 122 (632)
.-.++++++....+...
T Consensus 247 ~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 247 VQRLLLLNATSHGDTLN 263 (374)
T ss_pred CeEEEEecCccChHHHH
Confidence 23467777766554433
No 284
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=30.50 E-value=1.7e+02 Score=27.91 Aligned_cols=54 Identities=28% Similarity=0.276 Sum_probs=43.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEc----CHHHHHHHHHHcCCCceEEEEecCCCC
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS----QAAVALDILRERKGCFDVVLSDVHMPD 91 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~----sg~eALe~L~e~~~~pDLVILDi~MPd 91 (632)
..+.+|+|+.......+-|..+|.+.+..|..+. +.+++. + .-|+|++-..-+.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v---~----~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKV---H----DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHH---h----hCCEEEEecCCCC
Confidence 3577999999999999999999999999999888 444432 2 2699999886663
No 285
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=30.25 E-value=5.8e+02 Score=26.15 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=53.0
Q ss_pred EEcCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi~MPd-------mdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
++.+.+++.+..+. .+|-|.+.--.|. -.|++.+++++....+|++.+-+ -+.+.+.+.++.||++.-.
T Consensus 110 S~h~~eea~~A~~~---g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGG-i~~~nv~~v~~~Ga~gVAv 185 (211)
T COG0352 110 STHDLEEALEAEEL---GADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGG-INLENVPEVLEAGADGVAV 185 (211)
T ss_pred ecCCHHHHHHHHhc---CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcC-CCHHHHHHHHHhCCCeEEe
Confidence 67788888877643 3899988765553 45899999998777799998876 4567788999999998643
No 286
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=30.11 E-value=4.3e+02 Score=27.88 Aligned_cols=97 Identities=19% Similarity=0.147 Sum_probs=62.7
Q ss_pred HHHHHHHhCCCeEEEEcCH--HHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCcEEEEecCCCHHHHH
Q 006774 48 ILEQMLRRCLYNVTTCSQA--AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPVIMMSADGRVSAVM 122 (632)
Q Consensus 48 ~L~~lL~~~gy~V~~a~sg--~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~~iPIIILSa~~d~e~~~ 122 (632)
.++..|......+...... .-..+++... .||-+++|..=...|.-.++..|+. .+..||| .-...+...+.
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~a--GfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvV-R~p~g~~~~Ik 83 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILATA--GFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVV-RPPVGDPVMIK 83 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHhc--CCCEEEecccccCccHHHHHHHHHHhhccCCCCee-eCCCCCHHHHH
Confidence 4566676544444432222 2234555443 5999999998877888888888863 3445554 44556788899
Q ss_pred HHHhcCCcEEEeCCCC-HHHHHHHHH
Q 006774 123 RGIRHGACDYLIKPIR-EEELKNIWQ 147 (632)
Q Consensus 123 eAl~~GA~DYL~KP~~-~eeL~~~L~ 147 (632)
++++.||...|.-=++ .++-+..++
T Consensus 84 q~LD~GAqtlliPmV~s~eqAr~~V~ 109 (255)
T COG3836 84 QLLDIGAQTLLIPMVDTAEQARQAVA 109 (255)
T ss_pred HHHccccceeeeeccCCHHHHHHHHH
Confidence 9999999998875454 454444443
No 287
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=30.05 E-value=1.4e+02 Score=28.59 Aligned_cols=52 Identities=23% Similarity=0.174 Sum_probs=34.8
Q ss_pred CCCcEEEEEeCCHHH---------HHHHHHHHHhC-CCeEEEEcCHHHHHHHHHHcCCCceEEEE
Q 006774 31 PAGLRVLVVDDDITC---------LRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLS 85 (632)
Q Consensus 31 p~glrVLIVDDd~~i---------r~~L~~lL~~~-gy~V~~a~sg~eALe~L~e~~~~pDLVIL 85 (632)
...++|.|||.|... .+.+.+.|... .+.+. ..+.++|.+.++..+ ++.+|+
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~-~~~~~ea~~~l~~g~--~~~~iv 102 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWH-FVSAKEAEKGLADGK--YYMVIT 102 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceE-EcCHHHHHHHhHcCc--EEEEEE
Confidence 457899999999654 34555555543 34444 348899999998764 666654
No 288
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=29.92 E-value=5e+02 Score=26.79 Aligned_cols=91 Identities=13% Similarity=0.200 Sum_probs=55.2
Q ss_pred HHHHHHhCC-CeEEEEcCHHHHHHHHHHc-CCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE-ecCCCHHHHHHHH
Q 006774 49 LEQMLRRCL-YNVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM-SADGRVSAVMRGI 125 (632)
Q Consensus 49 L~~lL~~~g-y~V~~a~sg~eALe~L~e~-~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIIL-Sa~~d~e~~~eAl 125 (632)
+...|...+ .-|....+.++|+.+.+.. ...++. +++.+-.-+..+.++.++.... .+++= -.--+.+...++.
T Consensus 6 ~~~~l~~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~--IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~ 82 (211)
T COG0800 6 ILSKLKAQPVVPVIRGDDVEEALPLAKALIEGGIPA--IEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAI 82 (211)
T ss_pred HHHHHHHCCeeEEEEeCCHHHHHHHHHHHHHcCCCe--EEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHH
Confidence 334444443 4577888888888766542 123454 3444555568888888864433 33332 2234677888999
Q ss_pred hcCCcEEEeCC-CCHHHHH
Q 006774 126 RHGACDYLIKP-IREEELK 143 (632)
Q Consensus 126 ~~GA~DYL~KP-~~~eeL~ 143 (632)
++|+. |+.-| ++++-++
T Consensus 83 ~aGa~-fiVsP~~~~ev~~ 100 (211)
T COG0800 83 AAGAQ-FIVSPGLNPEVAK 100 (211)
T ss_pred HcCCC-EEECCCCCHHHHH
Confidence 99997 67777 5555443
No 289
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=29.91 E-value=4.9e+02 Score=27.35 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=37.1
Q ss_pred CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 93 DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 93 dGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
-|+-+++.+. ..+|||....... ..+.+..|..+|+..|-+.++|..++..++.
T Consensus 291 ~~~~~lEAma--~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~ 344 (372)
T cd04949 291 FGLSLMEALS--HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLN 344 (372)
T ss_pred cChHHHHHHh--CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHc
Confidence 3455555553 4678886432211 2345567889999999999999999988875
No 290
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=29.81 E-value=2.4e+02 Score=28.83 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=51.4
Q ss_pred cCHHHHHHHHHHcCCCceEEEEecCCCC-CCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 64 SQAAVALDILRERKGCFDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 64 ~sg~eALe~L~e~~~~pDLVILDi~MPd-mdG--leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
.+..+.++.+.+.. .-.+|++|+.-.+ +.| ++++++++....+|+|.--+-.+.+...++.+.|+++.+.
T Consensus 147 ~~~~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 147 IDLEEFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEHHHHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cCHHHHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 45667777766643 4579999997664 334 5678888665699999988888889999999999988875
No 291
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=29.67 E-value=1.5e+02 Score=32.19 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=45.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCe---E-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006774 35 RVLVVDDDITCLRILEQMLRRC--LYN---V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~~--gy~---V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~ 100 (632)
.|+++|-|..+.+.=+.++... +|+ | ....++...++.+.++ ++|+||+|..-|.+.+..+-.+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~--~~dVii~dssdpvgpa~~lf~~ 216 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKEN--PFDVIITDSSDPVGPACALFQK 216 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccC--CceEEEEecCCccchHHHHHHH
Confidence 4788888888877777777643 332 3 3455888877777554 4999999999888888765543
No 292
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.67 E-value=4.8e+02 Score=25.85 Aligned_cols=83 Identities=10% Similarity=0.078 Sum_probs=49.0
Q ss_pred CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC-CCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 58 y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~-~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
.-|....+.+++++.++..- .-.+=++.+.+.+.+..++++.++... .+.+ -...--..+....|++.||+..+.--
T Consensus 15 ~~v~r~~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~-g~gtvl~~d~~~~A~~~gAdgv~~p~ 92 (187)
T PRK07455 15 IAVIRAPDLELGLQMAEAVA-AGGMRLIEITWNSDQPAELISQLREKLPECII-GTGTILTLEDLEEAIAAGAQFCFTPH 92 (187)
T ss_pred EEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEE-eEEEEEcHHHHHHHHHcCCCEEECCC
Confidence 45677888888888776521 123445666777778888888876432 2211 00111123667888999997555433
Q ss_pred CCHHHH
Q 006774 137 IREEEL 142 (632)
Q Consensus 137 ~~~eeL 142 (632)
++.+.+
T Consensus 93 ~~~~~~ 98 (187)
T PRK07455 93 VDPELI 98 (187)
T ss_pred CCHHHH
Confidence 565443
No 293
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=29.63 E-value=1.9e+02 Score=28.22 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=34.4
Q ss_pred ceEEEEecCCCCCCH-------HHHHHHHhcc-----CCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 80 FDVVLSDVHMPDMDG-------FKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 80 pDLVILDi~MPdmdG-------leLL~~Lr~~-----~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+|.++++-..|+.+| ++.+++++.. +.+|+++.-+ -..+.+.++.+.|++.++.-
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GG-I~~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGG-INLETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHcCCCEEEEC
Confidence 687877765554333 3445555322 2477765544 34577888889999988764
No 294
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=29.46 E-value=70 Score=31.87 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 66 g~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
.+.+++.+++.+ ||.|=+ ||+ --..++++++....+|||.=---.+.+.+.+++++||...=
T Consensus 106 l~~~~~~i~~~~--PD~vEi---lPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVS 167 (175)
T PF04309_consen 106 LETGIKQIEQSK--PDAVEI---LPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVS 167 (175)
T ss_dssp HHHHHHHHHHHT---SEEEE---ESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEE
T ss_pred HHHHHHHHhhcC--CCEEEE---chH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEE
Confidence 345667777665 998766 788 55577888877778898764445678889999999998753
No 295
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=28.90 E-value=1.9e+02 Score=32.82 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=40.2
Q ss_pred CceEEEEecCCCC-CCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 79 CFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 79 ~pDLVILDi~MPd-mdGleLL~~Lr~~-~~iPIIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
.+|+|.+|..-.. ...++.+++|+.. +++|||+ ..-.+.+.+..++++||+...
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 4899999984432 3467788888765 6888887 344567778889999998774
No 296
>PRK00811 spermidine synthase; Provisional
Probab=28.89 E-value=2.9e+02 Score=29.15 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=38.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC------CCeE-EEEcCHHHHHHHHHHcCCCceEEEEecCCCC
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRC------LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~------gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPd 91 (632)
.-+|.+||=|+.+.+..++.+... .-.+ ....++.+.+. .....+|+||+|..-|.
T Consensus 100 ~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~---~~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 100 VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA---ETENSFDVIIVDSTDPV 162 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh---hCCCcccEEEECCCCCC
Confidence 358999999999999999988642 1123 24556555443 33346999999986553
No 297
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=28.84 E-value=3.5e+02 Score=26.78 Aligned_cols=76 Identities=12% Similarity=0.126 Sum_probs=49.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC--CCeEEEE----c--CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTC----S--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~--gy~V~~a----~--sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~ 103 (632)
.+++|.++...+.+.+.+.+.|+.. +..+..+ . +.++.++.+.+. .+|+|++-+.+|...- ++.+.+.
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s--~~dil~VglG~PkQE~--~~~~~~~ 122 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS--GAGIVFVGLGCPKQEI--WMRNHRH 122 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc--CCCEEEEEcCCcHhHH--HHHHhHH
Confidence 5689999999999999999999865 3444332 1 122335566654 4999999999997653 2344433
Q ss_pred cCCCcEEE
Q 006774 104 EMDLPVIM 111 (632)
Q Consensus 104 ~~~iPIII 111 (632)
....++++
T Consensus 123 ~~~~~v~~ 130 (177)
T TIGR00696 123 LKPDAVMI 130 (177)
T ss_pred hCCCcEEE
Confidence 33344444
No 298
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=28.77 E-value=4.1e+02 Score=29.70 Aligned_cols=102 Identities=15% Similarity=0.262 Sum_probs=60.3
Q ss_pred eCCHHHHHHHHHHHHhCCCe----EEEE-----------------------cCHHHHHHHHHHcCCCceEEEEecCCCCC
Q 006774 40 DDDITCLRILEQMLRRCLYN----VTTC-----------------------SQAAVALDILRERKGCFDVVLSDVHMPDM 92 (632)
Q Consensus 40 DDd~~ir~~L~~lL~~~gy~----V~~a-----------------------~sg~eALe~L~e~~~~pDLVILDi~MPdm 92 (632)
+++....+.+++.++..+|. +..+ -+.++++++++.....++++.+.-=++..
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~ 289 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDED 289 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 55667777788888665443 2222 24478888776532237887777656554
Q ss_pred CHHHHHHHHhccC--CCcEEEEecC---CCHHHHHHHHhcCCcE-EEeCCCCHHHHHH
Q 006774 93 DGFKLLEHIGLEM--DLPVIMMSAD---GRVSAVMRGIRHGACD-YLIKPIREEELKN 144 (632)
Q Consensus 93 dGleLL~~Lr~~~--~iPIIILSa~---~d~e~~~eAl~~GA~D-YL~KP~~~eeL~~ 144 (632)
| ++-.++|+... .+|| +... .+.....++++.++.+ ++.||...--|-.
T Consensus 290 D-~eg~~~L~~~~g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite 344 (408)
T cd03313 290 D-WEGWAKLTAKLGDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTE 344 (408)
T ss_pred C-HHHHHHHHHhcCCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHH
Confidence 4 55555665443 4444 3333 2467778888777654 5678865433333
No 299
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=28.57 E-value=4.4e+02 Score=27.53 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=61.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILS 113 (632)
.+++|+.+.+.. +.++..+ .....+.-.-+.++..+++.. .|++++-.. +.-|+-+++.+. ..+|||...
T Consensus 222 ~~l~ivG~g~~~-~~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama--~G~Pvi~~~ 291 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA--SGTPVIAYG 291 (351)
T ss_pred CcEEEEECChhH-HHHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH--cCCCEEEeC
Confidence 567777776543 2233311 112223333355556666653 577665443 334555666553 467888753
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
. .. ..+.+..|..+++..|-+.++|.+++..++.
T Consensus 292 ~-~~---~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~ 325 (351)
T cd03804 292 K-GG---ALETVIDGVTGILFEEQTVESLAAAVERFEK 325 (351)
T ss_pred C-CC---CcceeeCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 3 22 2344566778999999999999999988765
No 300
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=28.55 E-value=2.9e+02 Score=30.28 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=41.1
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCeEEEE---------cCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHH
Q 006774 34 LRVLVVDDDIT-----CLRILEQMLRRCLYNVTTC---------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (632)
Q Consensus 34 lrVLIVDDd~~-----ir~~L~~lL~~~gy~V~~a---------~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~ 99 (632)
-|+|||-|... ..+.+...|+..+.++..+ .+..++.+.+++.. +|+||- ..+..-++..+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~Iia---vGGGS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEG--CDFVVG---LGGGSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCCccHHHHHH
Confidence 48898888654 3356777787767665544 33556667777654 898874 34666666666
Q ss_pred HH
Q 006774 100 HI 101 (632)
Q Consensus 100 ~L 101 (632)
.+
T Consensus 101 ~i 102 (380)
T cd08185 101 AI 102 (380)
T ss_pred HH
Confidence 55
No 301
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.40 E-value=5.9e+02 Score=26.07 Aligned_cols=71 Identities=11% Similarity=0.062 Sum_probs=51.4
Q ss_pred cCHHHHHHHHHHcCCCceEEEEecC-CC-CC-CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 64 SQAAVALDILRERKGCFDVVLSDVH-MP-DM-DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 64 ~sg~eALe~L~e~~~~pDLVILDi~-MP-dm-dGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
.+..+..+.+.+. --.++++|+. +- +. .-+++++++.....+||++=-+-.+.+.+.++++.|++..+.-.
T Consensus 30 ~dp~~~a~~~~~~--~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGt 103 (228)
T PRK04128 30 GDPVEIALRFSEY--VDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGT 103 (228)
T ss_pred CCHHHHHHHHHHh--CCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence 3666766666543 1247888886 22 21 35889999976678899987777888889999999999877643
No 302
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.96 E-value=3.9e+02 Score=30.07 Aligned_cols=99 Identities=17% Similarity=0.204 Sum_probs=58.1
Q ss_pred CCcEEEEEeCC-HHHHHHHHHHHHhCCCeEEEEcC--HHHHHHHHHHcCCCceEEEEecC-CCCCCH--HHHHHHHhccC
Q 006774 32 AGLRVLVVDDD-ITCLRILEQMLRRCLYNVTTCSQ--AAVALDILRERKGCFDVVLSDVH-MPDMDG--FKLLEHIGLEM 105 (632)
Q Consensus 32 ~glrVLIVDDd-~~ir~~L~~lL~~~gy~V~~a~s--g~eALe~L~e~~~~pDLVILDi~-MPdmdG--leLL~~Lr~~~ 105 (632)
.|-+|++.+|- .-.+..+..++.+.+.++..+.. ..+.++.+.. ...++|+++.- -|-+.- +..+.++....
T Consensus 101 ~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~ 178 (396)
T COG0626 101 AGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPDIPAIARLAKAY 178 (396)
T ss_pred CCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCcccccccHHHHHHHHHhc
Confidence 36788988884 56677888889998999886664 4445555543 13899999852 132322 22233332223
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 106 DLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 106 ~iPIIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
. .++++-..-..-...+.++.|||=++
T Consensus 179 g-~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 179 G-ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred C-CEEEEECCcccccccChhhcCCCEEE
Confidence 3 34444333333345677888877554
No 303
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=27.92 E-value=5.8e+02 Score=27.41 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHH
Q 006774 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 145 (632)
Q Consensus 66 g~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~ 145 (632)
.++..+++.. .|+.++- ..++.-|+-+++.+. ..+|||.. ... ...+.+..|.++++..|.+.++|.+.
T Consensus 291 ~~~~~~~l~~----adv~v~~-s~~e~~~~~llEAmA--~G~PVIas-~~~---g~~e~i~~~~~G~lv~~~d~~~la~~ 359 (396)
T cd03818 291 YDQYLALLQV----SDVHVYL-TYPFVLSWSLLEAMA--CGCLVVGS-DTA---PVREVITDGENGLLVDFFDPDALAAA 359 (396)
T ss_pred HHHHHHHHHh----CcEEEEc-CcccccchHHHHHHH--CCCCEEEc-CCC---CchhhcccCCceEEcCCCCHHHHHHH
Confidence 3455555543 4655542 234444566666663 46788763 222 23456677889999999999999999
Q ss_pred HHHHHH
Q 006774 146 WQHVVR 151 (632)
Q Consensus 146 L~~vlr 151 (632)
+..++.
T Consensus 360 i~~ll~ 365 (396)
T cd03818 360 VIELLD 365 (396)
T ss_pred HHHHHh
Confidence 988875
No 304
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=27.81 E-value=4.2e+02 Score=27.47 Aligned_cols=75 Identities=9% Similarity=0.097 Sum_probs=49.4
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCeEEEE-------------cCHHHHHHHHHHc-CCCceEEEEecCCCCCCHHHHH
Q 006774 34 LRVLVVDDD-ITCLRILEQMLRRCLYNVTTC-------------SQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLL 98 (632)
Q Consensus 34 lrVLIVDDd-~~ir~~L~~lL~~~gy~V~~a-------------~sg~eALe~L~e~-~~~pDLVILDi~MPdmdGleLL 98 (632)
-||-|+-.- +.+.+.++..|+..|++|... -+.+...+.+++. ..++|.|++-. -++..++++
T Consensus 121 ~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisC--TnLrt~~vi 198 (239)
T TIGR02990 121 RRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSC--TALRAATCA 198 (239)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeC--CCchhHHHH
Confidence 478888887 566778889999999887543 2344445555432 22467666652 355677777
Q ss_pred HHHhccCCCcEE
Q 006774 99 EHIGLEMDLPVI 110 (632)
Q Consensus 99 ~~Lr~~~~iPII 110 (632)
+.|......|||
T Consensus 199 ~~lE~~lGkPVl 210 (239)
T TIGR02990 199 QRIEQAIGKPVV 210 (239)
T ss_pred HHHHHHHCCCEE
Confidence 777666677775
No 305
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=27.81 E-value=7.2e+02 Score=25.98 Aligned_cols=38 Identities=11% Similarity=0.219 Sum_probs=32.2
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEE
Q 006774 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 95 leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DY 132 (632)
+++++.++...++|||...+-.+.+.+.+++..||+..
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V 257 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAV 257 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 57778887666899999988889999999999999765
No 306
>smart00426 TEA TEA domain.
Probab=27.74 E-value=42 Score=28.46 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=15.1
Q ss_pred cchHHHHHHHHHHHHHhc
Q 006774 224 VWSVELHQQFVSAVNQLG 241 (632)
Q Consensus 224 ~wt~eLh~~Fl~av~~Lg 241 (632)
+|..++...|++++...-
T Consensus 5 vWp~~lE~Af~~aL~~~~ 22 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP 22 (68)
T ss_pred cCcHHHHHHHHHHHHHcC
Confidence 688999999999888773
No 307
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.72 E-value=1.6e+02 Score=30.28 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=32.4
Q ss_pred CCCcEEEEecC------CCHHHHHHHHhcCCcEEEeCCCCHHHHHH
Q 006774 105 MDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKN 144 (632)
Q Consensus 105 ~~iPIIILSa~------~d~e~~~eAl~~GA~DYL~KP~~~eeL~~ 144 (632)
-.+|||+++-+ .+..++..+-++||++||.-.+.++|-..
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~ 139 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAET 139 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHH
Confidence 35899998754 46677888899999999998888887654
No 308
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=27.37 E-value=2.3e+02 Score=29.54 Aligned_cols=94 Identities=19% Similarity=0.257 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHH
Q 006774 45 CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRG 124 (632)
Q Consensus 45 ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eA 124 (632)
....|.+..++.|....+..-..++++.+.+. ++-++=+--.+.+-+.|++++.. ...|||+=|+-...+.+.+|
T Consensus 57 ~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~----~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~stl~EI~~A 131 (241)
T PF03102_consen 57 QHKELFEYCKELGIDFFSTPFDEESVDFLEEL----GVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMSTLEEIERA 131 (241)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHH----T-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT--HHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEECCCCHHHHHHHHHc----CCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCCCHHHHHHH
Confidence 44556677777788877666677788888653 44455555567788999999864 67899999988877766665
Q ss_pred H----hcCCcEEEe------CCCCHHHHH
Q 006774 125 I----RHGACDYLI------KPIREEELK 143 (632)
Q Consensus 125 l----~~GA~DYL~------KP~~~eeL~ 143 (632)
+ +.|..++.. -|..++++.
T Consensus 132 v~~~~~~~~~~l~llHC~s~YP~~~e~~N 160 (241)
T PF03102_consen 132 VEVLREAGNEDLVLLHCVSSYPTPPEDVN 160 (241)
T ss_dssp HHHHHHHCT--EEEEEE-SSSS--GGG--
T ss_pred HHHHHhcCCCCEEEEecCCCCCCChHHcC
Confidence 4 345555432 255556554
No 309
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=27.17 E-value=5.3e+02 Score=29.18 Aligned_cols=100 Identities=14% Similarity=0.241 Sum_probs=61.5
Q ss_pred CCcEEEEEeC---CH-HHHHHHHHHHHhC-CCe--EEEEcCHHHHHHHHHHcCCCceEEEEecCCCC------------C
Q 006774 32 AGLRVLVVDD---DI-TCLRILEQMLRRC-LYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (632)
Q Consensus 32 ~glrVLIVDD---d~-~ir~~L~~lL~~~-gy~--V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd------------m 92 (632)
.+..++.||- +. ...+.++.+-+.+ ... +..+.+.++|..++.. ..|.|.+-+. |+ .
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g-~G~~~~t~~~~~~g~ 310 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGIG-PGSICTTRIVAGVGV 310 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCCccceecCCCc
Confidence 4678888887 43 3333344433332 222 2357788888887754 3787755431 11 1
Q ss_pred CHHHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 93 dGleLL~~Lr---~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
.-+.++..+. ....+|||.=.+-.....+.+|+.+||+....=
T Consensus 311 p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 311 PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 1234444442 235789888777788889999999999988765
No 310
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=27.12 E-value=5.8e+02 Score=31.64 Aligned_cols=127 Identities=18% Similarity=0.155 Sum_probs=68.9
Q ss_pred hhHHHHHHHcCC-CCCCCcccccccCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCc
Q 006774 2 AALQRIVQSSGG-SGYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCF 80 (632)
Q Consensus 2 ai~~~lv~~~GG-~G~gs~~~~~~~~p~~~p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~p 80 (632)
++++++++.||+ .|.--++..... +.-...-+|-++-|--..++....-+-. + +
T Consensus 109 svA~RvAeel~~~~G~~VGY~iRfe--~~~s~~Trik~mTdGiLlrei~~D~~Ls-~----------------------y 163 (845)
T COG1643 109 SVAERVAEELGEKLGETVGYSIRFE--SKVSPRTRIKVMTDGILLREIQNDPLLS-G----------------------Y 163 (845)
T ss_pred HHHHHHHHHhCCCcCceeeEEEEee--ccCCCCceeEEeccHHHHHHHhhCcccc-c----------------------C
Confidence 578899999999 354445544442 2223445777887766555443222211 2 4
Q ss_pred eEEEEecCCC---CCC-HHHHHHHH-hcc-CCCcEEEEecCCCHHHHHHHHh-c----------CCcEEEeCCCCHHH-H
Q 006774 81 DVVLSDVHMP---DMD-GFKLLEHI-GLE-MDLPVIMMSADGRVSAVMRGIR-H----------GACDYLIKPIREEE-L 142 (632)
Q Consensus 81 DLVILDi~MP---dmd-GleLL~~L-r~~-~~iPIIILSa~~d~e~~~eAl~-~----------GA~DYL~KP~~~ee-L 142 (632)
++||+|=-=. +.| .+.+++.+ ... ++++||++|+.-+.+...+.+. + -+.-+-.++...++ +
T Consensus 164 s~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l 243 (845)
T COG1643 164 SVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYIL 243 (845)
T ss_pred CEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhH
Confidence 5555542111 112 45556664 333 3688888888877776666554 1 12333445544555 7
Q ss_pred HHHHHHHHHhh
Q 006774 143 KNIWQHVVRKR 153 (632)
Q Consensus 143 ~~~L~~vlr~~ 153 (632)
..++..+++..
T Consensus 244 ~~ai~~~v~~~ 254 (845)
T COG1643 244 LDAIVAAVDIH 254 (845)
T ss_pred HHHHHHHHHHh
Confidence 77776666544
No 311
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=26.91 E-value=4.6e+02 Score=27.93 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=50.7
Q ss_pred EEcCHHHHHHHHHHcCCCceEEEEec--CC---CC--CCHHHHHHHHhccCCCcEEEEecCC-CHHHHHHHHhcCCcEEE
Q 006774 62 TCSQAAVALDILRERKGCFDVVLSDV--HM---PD--MDGFKLLEHIGLEMDLPVIMMSADG-RVSAVMRGIRHGACDYL 133 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi--~M---Pd--mdGleLL~~Lr~~~~iPIIILSa~~-d~e~~~eAl~~GA~DYL 133 (632)
.+++.++|.+..++.. +|.+-+.+ .- ++ .=|++.+++|+...++|+++.-+.. ..+...++++.|++..=
T Consensus 151 s~t~~eea~~f~~~tg--~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 151 LLTSTTEAKRFAEETD--VDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred eeCCHHHHHHHHHhhC--CCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence 4688999988876533 78777632 11 11 2378999999877789999887433 56677889999998765
Q ss_pred e
Q 006774 134 I 134 (632)
Q Consensus 134 ~ 134 (632)
.
T Consensus 229 v 229 (281)
T PRK06806 229 V 229 (281)
T ss_pred E
Confidence 4
No 312
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.72 E-value=3.8e+02 Score=28.58 Aligned_cols=91 Identities=8% Similarity=-0.026 Sum_probs=57.3
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC--C-eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006774 35 RVLVVDDDITCLRILEQMLR----RCL--Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~----~~g--y-~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~i 107 (632)
.|||-|.|-.....+...+. ..+ . --.++.+.+++.+.+.. .+|.|.+|- -|.+.++++......
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-----~~~e~l~~~~~~~~~ 231 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-----RTPDEIREFVKLVPS 231 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-----CCHHHHHHHHHhcCC
Confidence 58888887655544444443 223 2 23578999999887643 489999973 345666666432222
Q ss_pred cE-EEEecCCCHHHHHHHHhcCCcEEE
Q 006774 108 PV-IMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 108 PI-IILSa~~d~e~~~eAl~~GA~DYL 133 (632)
|+ +..++--+.+.+.+..+.|++..-
T Consensus 232 ~i~i~AiGGIt~~ni~~~a~~Gvd~IA 258 (277)
T PRK08072 232 AIVTEASGGITLENLPAYGGTGVDYIS 258 (277)
T ss_pred CceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 33 334455677888888899998754
No 313
>PRK01581 speE spermidine synthase; Validated
Probab=26.55 E-value=2.8e+02 Score=30.99 Aligned_cols=56 Identities=23% Similarity=0.273 Sum_probs=35.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHH--HH---hC---CCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCC
Q 006774 32 AGLRVLVVDDDITCLRILEQM--LR---RC---LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~l--L~---~~---gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MP 90 (632)
...+|.+||=|+.+.+..+.. |. .. .-.+. ...++.+.+. .....+|+||+|+--|
T Consensus 173 ~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~---~~~~~YDVIIvDl~DP 237 (374)
T PRK01581 173 TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS---SPSSLYDVIIIDFPDP 237 (374)
T ss_pred CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH---hcCCCccEEEEcCCCc
Confidence 345899999999988887752 21 11 12332 4566665554 3334699999997443
No 314
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=26.50 E-value=4.8e+02 Score=26.67 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=47.1
Q ss_pred EcCHHHHHHHHHHcCCCceEEEEecCCC------CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 63 CSQAAVALDILRERKGCFDVVLSDVHMP------DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVILDi~MP------dmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
+.+..++.+..+ . ..|.|.+.-..+ .--|+++++++.....+||+.+-+- ..+.+.++++.||+++-
T Consensus 118 ~~s~~~a~~A~~-~--gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~GA~giA 190 (221)
T PRK06512 118 LRDRHGAMEIGE-L--RPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAETGAEFVA 190 (221)
T ss_pred CCCHHHHHHhhh-c--CCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHhCCCEEE
Confidence 346666666432 2 478888764431 1247889988876778999999765 56677888999999873
No 315
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=26.45 E-value=2.1e+02 Score=27.86 Aligned_cols=81 Identities=14% Similarity=0.151 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCC--CCCHHHHHHHHhcc-CCCcEEEE--ecCCCHHHHHHHHhcCCcEEEeCCCCH
Q 006774 65 QAAVALDILRERKGCFDVVLSDVHMP--DMDGFKLLEHIGLE-MDLPVIMM--SADGRVSAVMRGIRHGACDYLIKPIRE 139 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~MP--dmdGleLL~~Lr~~-~~iPIIIL--Sa~~d~e~~~eAl~~GA~DYL~KP~~~ 139 (632)
+.++++++++..... +-.+.+.+| -..|++.++.++.. +++|+++- ...........+.++|++..+.-....
T Consensus 11 ~~~~~~~~~~~l~~~--i~~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~ 88 (202)
T cd04726 11 DLEEALELAKKVPDG--VDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP 88 (202)
T ss_pred CHHHHHHHHHHhhhc--CCEEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC
Confidence 444555555443211 223444333 23578888888754 57787763 223332335677899998666544332
Q ss_pred -HHHHHHHH
Q 006774 140 -EELKNIWQ 147 (632)
Q Consensus 140 -eeL~~~L~ 147 (632)
+.+...++
T Consensus 89 ~~~~~~~i~ 97 (202)
T cd04726 89 LSTIKKAVK 97 (202)
T ss_pred HHHHHHHHH
Confidence 33444444
No 316
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=26.42 E-value=3.2e+02 Score=32.31 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=50.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcC-HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~s-g~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr-~~~~iPII 110 (632)
++++.++|.|+...+.++ +.++.+...+- -.+.++... -.+.|++++-..-++ .-..++..+| ..++++||
T Consensus 423 g~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~ag--i~~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~ii 495 (621)
T PRK03562 423 GVKMTVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAG--AAKAEVLINAIDDPQ-TSLQLVELVKEHFPHLQII 495 (621)
T ss_pred CCCEEEEECCHHHHHHHH----hcCCeEEEEeCCCHHHHHhcC--CCcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEE
Confidence 466778887776554443 34666543321 222333222 124677777653222 2344555555 35788888
Q ss_pred EEecCCCHHHHHHHHhcCCcEEE
Q 006774 111 MMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL 133 (632)
+.+. +.+...+..+.||+..+
T Consensus 496 aRa~--d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 496 ARAR--DVDHYIRLRQAGVEKPE 516 (621)
T ss_pred EEEC--CHHHHHHHHHCCCCEEe
Confidence 7764 44556666788998654
No 317
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=26.33 E-value=7.2e+02 Score=25.47 Aligned_cols=108 Identities=22% Similarity=0.290 Sum_probs=59.7
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCC--eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006774 33 GLRVLVVDDDIT---CLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (632)
Q Consensus 33 glrVLIVDDd~~---ir~~L~~lL~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~i 107 (632)
.++++|+.+.+. ..+.+...+...+. .|......++..+++.. .|++|+=..-++.-|.-+++.+. ..+
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e~~~~~l~EA~a--~G~ 289 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPEAFGRTAVEAQA--MGR 289 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCCCCchHHHHHHh--cCC
Confidence 356666654432 23333334443332 24333333333444432 46666533233444566666663 467
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
|||+. .... ..+.+..+.++++..+-+.+++...+..++
T Consensus 290 PvI~~-~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 290 PVIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred CEEEc-CCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 88753 3222 345566777899999999999999886554
No 318
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=26.17 E-value=3.5e+02 Score=27.03 Aligned_cols=115 Identities=20% Similarity=0.206 Sum_probs=56.1
Q ss_pred CcEEEEEeCC---HHHHHHHHHHHHhCCCeEEEEcC---HH----HHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006774 33 GLRVLVVDDD---ITCLRILEQMLRRCLYNVTTCSQ---AA----VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 33 glrVLIVDDd---~~ir~~L~~lL~~~gy~V~~a~s---g~----eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr 102 (632)
+.+|.+|--| .-..+.|+.+-+..+..+..+.. .. ++++.++.. .+|+||+|.-=-...-.+++++++
T Consensus 29 ~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~--~~D~vlIDT~Gr~~~d~~~~~el~ 106 (196)
T PF00448_consen 29 GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK--GYDLVLIDTAGRSPRDEELLEELK 106 (196)
T ss_dssp T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT--TSSEEEEEE-SSSSTHHHHHHHHH
T ss_pred cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc--CCCEEEEecCCcchhhHHHHHHHH
Confidence 4566655444 34556677777777777776653 22 334444333 489999997321122234444443
Q ss_pred ----c-cCCCcEEEEecCCCHHHHHHHH---h-cCCcEE-EeCCCCHHHHHHHHHHH
Q 006774 103 ----L-EMDLPVIMMSADGRVSAVMRGI---R-HGACDY-LIKPIREEELKNIWQHV 149 (632)
Q Consensus 103 ----~-~~~iPIIILSa~~d~e~~~eAl---~-~GA~DY-L~KP~~~eeL~~~L~~v 149 (632)
. .+.-.++++++....+....+. + .+.+.. ++|=-....+-.++..+
T Consensus 107 ~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l~~~ 163 (196)
T PF00448_consen 107 KLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALLSLA 163 (196)
T ss_dssp HHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHHHHH
T ss_pred HHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccceeHH
Confidence 2 2334456666665554433332 2 345554 34432233333334333
No 319
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=26.11 E-value=8.9e+02 Score=26.47 Aligned_cols=98 Identities=11% Similarity=0.129 Sum_probs=62.0
Q ss_pred EEEEEeCC----HHHHHHHHHHHHhCCCe-EE--EEcCHHHHHHHHHHcCCCceEEEEecCCC-----------CCC--H
Q 006774 35 RVLVVDDD----ITCLRILEQMLRRCLYN-VT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMD--G 94 (632)
Q Consensus 35 rVLIVDDd----~~ir~~L~~lL~~~gy~-V~--~a~sg~eALe~L~e~~~~pDLVILDi~MP-----------dmd--G 94 (632)
.++++|-- ..+.+.++.+-+.+... +. .+.+.+.|..+++. ..|.|.+-+.-. +.. +
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a---Gad~I~V~~G~G~~~~tr~~~g~g~~~~~ 186 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 186 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccceeeeccCCCchH
Confidence 67777762 44445555544444322 22 24577777777653 367776553111 112 3
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 95 leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+..+..++...++|||.-.+-.....+.+|+.+||+....=
T Consensus 187 l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 187 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 44566666556799999888888899999999999988654
No 320
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=26.11 E-value=2.4e+02 Score=30.81 Aligned_cols=53 Identities=21% Similarity=0.109 Sum_probs=38.9
Q ss_pred ceEEEEecCCCCCC-HHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 80 FDVVLSDVHMPDMD-GFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 80 pDLVILDi~MPdmd-GleLL~~Lr~~-~~iPIIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
+|+|.+|+..+..+ -.+++++|+.. ++++||.= .-.+.+.+..+.++|++..+
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 59999999887543 56788999754 45666652 23367788899999999865
No 321
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=26.06 E-value=2.5e+02 Score=28.92 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=34.4
Q ss_pred HHHHHHhccCCCcEEEEe-----cCCCHHHHHHHHhcCCcEEEeC--CCC-HHHHHHHHHHH
Q 006774 96 KLLEHIGLEMDLPVIMMS-----ADGRVSAVMRGIRHGACDYLIK--PIR-EEELKNIWQHV 149 (632)
Q Consensus 96 eLL~~Lr~~~~iPIIILS-----a~~d~e~~~eAl~~GA~DYL~K--P~~-~eeL~~~L~~v 149 (632)
++++.++...++|+++++ ...-...+.++.++|++.++.- |++ .+++...++.+
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~ 125 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEII 125 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHH
Confidence 567777766788987664 2233344667789999999885 333 45555555444
No 322
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=25.92 E-value=5e+02 Score=33.34 Aligned_cols=100 Identities=15% Similarity=0.206 Sum_probs=66.2
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEc---CHHHHHHHHHHcCCCceEEEEecCCC-CCCH-HHHHHHHhc-
Q 006774 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMP-DMDG-FKLLEHIGL- 103 (632)
Q Consensus 34 lrVLIV----DDd~~ir~~L~~lL~~~gy~V~~a~---sg~eALe~L~e~~~~pDLVILDi~MP-dmdG-leLL~~Lr~- 103 (632)
-+|++. |-|..=..++..+|+..||+|+-.. ..++.++.+++.+ +|+|-+...|. .+.. .++++.|+.
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~--~diVgLS~Lmt~t~~~m~~vi~~L~~~ 810 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHN--ADVIGLSGLITPSLDEMKEVAEEMNRR 810 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcccccHHHHHHHHHHHHhc
Confidence 477777 6667777778888899999997544 4667777777765 99999998775 3443 456777754
Q ss_pred cCCCcEEEEecCCCHHHHHHHH---hcCCcEEEeC
Q 006774 104 EMDLPVIMMSADGRVSAVMRGI---RHGACDYLIK 135 (632)
Q Consensus 104 ~~~iPIIILSa~~d~e~~~eAl---~~GA~DYL~K 135 (632)
...+||++=-+.-+.+....-+ ..|++.|-.-
T Consensus 811 g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~d 845 (1178)
T TIGR02082 811 GITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLD 845 (1178)
T ss_pred CCCceEEEeccccchhHHHhhhhhhccCCeEEecC
Confidence 3467777655444444443212 2388777653
No 323
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=25.91 E-value=3.4e+02 Score=28.96 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=48.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCH--HHHHHHHhccCCCc
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG--FKLLEHIGLEMDLP 108 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~-V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdG--leLL~~Lr~~~~iP 108 (632)
+.+|+-||-++...+..++.++..+.. + ..+.+..+... .....||+|++| |...| -++++.|.....-.
T Consensus 195 ~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~---~~~~~~D~Vv~d---PPr~G~~~~~~~~l~~~~~~~ 268 (315)
T PRK03522 195 GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFAT---AQGEVPDLVLVN---PPRRGIGKELCDYLSQMAPRF 268 (315)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHH---hcCCCCeEEEEC---CCCCCccHHHHHHHHHcCCCe
Confidence 358999999999988888888766542 3 24555554432 112249999999 33444 35666664332234
Q ss_pred EEEEecCC
Q 006774 109 VIMMSADG 116 (632)
Q Consensus 109 IIILSa~~ 116 (632)
||.++...
T Consensus 269 ivyvsc~p 276 (315)
T PRK03522 269 ILYSSCNA 276 (315)
T ss_pred EEEEECCc
Confidence 55555544
No 324
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=25.76 E-value=4e+02 Score=28.14 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=56.6
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC---CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH-hcc-C
Q 006774 35 RVLVVDDDITCLRILEQMLR----RCL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLE-M 105 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~----~~g---y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~L-r~~-~ 105 (632)
.|||.|++..+.-.+...+. ..+ .....+.+.+++++.+.. .+|.|.+|-.-| +-++++ +.. .
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~---gaDyI~ld~~~~-----e~lk~~v~~~~~ 221 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA---GADIIMLDNMKP-----EEIKEAVQLLKG 221 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHHhcC
Confidence 58888887555433333332 222 234588999999988753 389999986443 333333 211 2
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 106 DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 106 ~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
.+|+++ ++--+.+.+.+..+.|++.+-.
T Consensus 222 ~ipi~A-sGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 222 RVLLEA-SGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCcEEE-ECCCCHHHHHHHHHcCCCEEEe
Confidence 366554 5556778888888999987643
No 325
>CHL00101 trpG anthranilate synthase component 2
Probab=25.70 E-value=87 Score=30.91 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=34.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEE
Q 006774 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (632)
Q Consensus 36 VLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIL 85 (632)
|||||.....-..+.+.|+..+..+.........+..+... .||.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNL--NIRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhC--CCCEEEE
Confidence 89999999999999999999888887766443122222222 3887776
No 326
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=25.69 E-value=4.6e+02 Score=25.72 Aligned_cols=70 Identities=7% Similarity=-0.050 Sum_probs=50.9
Q ss_pred EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~-~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
..+.+.+|+.+.++. .+|.|-++- .+. .|.++++.++.. +.+|++.+.+- +.+.+.+.++.|++....-.
T Consensus 102 ~gv~t~~e~~~A~~~---Gad~i~~~p-~~~-~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s 172 (190)
T cd00452 102 PGVATPTEIMQALEL---GADIVKLFP-AEA-VGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGS 172 (190)
T ss_pred CCcCCHHHHHHHHHC---CCCEEEEcC-Ccc-cCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEch
Confidence 456688898887653 389998853 333 389999998643 46888877665 77888899999988765543
No 327
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.55 E-value=2.2e+02 Score=30.24 Aligned_cols=57 Identities=19% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHh-ccCCCcEEEEe------cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 95 FKLLEHIG-LEMDLPVIMMS------ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 95 leLL~~Lr-~~~~iPIIILS------a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
+++++.+| ....+|+++|+ .+.-.....++.+.|+++.|.-.+..++-......+.+
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~ 145 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEK 145 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHH
No 328
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=25.50 E-value=1.1e+02 Score=31.08 Aligned_cols=79 Identities=20% Similarity=0.194 Sum_probs=44.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEec--CCCCCCHH--HHHHHHhccCCCcE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV--HMPDMDGF--KLLEHIGLEMDLPV 109 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi--~MPdmdGl--eLL~~Lr~~~~iPI 109 (632)
|||||+|........+...|.+.|+.+.........+....+....+|.||+-= ..|..++. ++++++. ...+||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~-~~~~Pi 79 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACA-AAGTPL 79 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHH-hCCCCE
Confidence 589999999888888888898888877655433221111111111378776631 11322232 2344332 246888
Q ss_pred EEEe
Q 006774 110 IMMS 113 (632)
Q Consensus 110 IILS 113 (632)
+-+.
T Consensus 80 LGIC 83 (214)
T PRK07765 80 LGVC 83 (214)
T ss_pred EEEc
Confidence 8765
No 329
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=25.47 E-value=78 Score=32.82 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=38.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-------CCeEEEEcCHHHHHHHHHHcCC-CceEEEEecCCCCCC
Q 006774 34 LRVLVVDDDITCLRILEQMLRRC-------LYNVTTCSQAAVALDILRERKG-CFDVVLSDVHMPDMD 93 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~-------gy~V~~a~sg~eALe~L~e~~~-~pDLVILDi~MPdmd 93 (632)
.+|-+||=|+.+.+..++.+... ..++ ...++..-+ ++... .+|+||+|+.-|...
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i-~~~Dg~~~l---~~~~~~~yDvIi~D~~dp~~~ 164 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI-IIGDGRKFL---KETQEEKYDVIIVDLTDPDGP 164 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE-EESTHHHHH---HTSSST-EEEEEEESSSTTSC
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEE-EEhhhHHHH---HhccCCcccEEEEeCCCCCCC
Confidence 57999999999999999887642 1233 566665554 44444 699999999877543
No 330
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=25.40 E-value=5.1e+02 Score=33.49 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=65.5
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEc---CHHHHHHHHHHcCCCceEEEEecCCC-CCCH-HHHHHHHhc-
Q 006774 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMP-DMDG-FKLLEHIGL- 103 (632)
Q Consensus 34 lrVLIV----DDd~~ir~~L~~lL~~~gy~V~~a~---sg~eALe~L~e~~~~pDLVILDi~MP-dmdG-leLL~~Lr~- 103 (632)
-+|++. |-|..=..++..+|+..||+|+-.. ..++.++.+.+.+ +|+|.+...|. .+.. .++++.|+.
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~--~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEEN--ADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 477777 6777777788888999999997544 4667777777765 99999998775 3333 456777753
Q ss_pred cCCCcEEEEecCCCHHH-HHHH-Hhc-CCcEEEeC
Q 006774 104 EMDLPVIMMSADGRVSA-VMRG-IRH-GACDYLIK 135 (632)
Q Consensus 104 ~~~iPIIILSa~~d~e~-~~eA-l~~-GA~DYL~K 135 (632)
..++||++=-+.-+... ..+. -.+ |++.|..-
T Consensus 830 g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~D 864 (1229)
T PRK09490 830 GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTD 864 (1229)
T ss_pred CCCCeEEEEeeccchhhhhhhhhhcccCCcEEecC
Confidence 45677776544434322 1111 122 88777643
No 331
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=25.39 E-value=6.4e+02 Score=26.05 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=34.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEec
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi 87 (632)
+.+|..+|-++...+..+..++..+..+.. .+..+.+.... ...+|+|++|-
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~--~~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTAL--RGRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhc--CCCEeEEEECC
Confidence 358999999999998888888776654433 33333322111 12599999984
No 332
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=25.39 E-value=7.8e+02 Score=25.60 Aligned_cols=65 Identities=9% Similarity=-0.001 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCeEEE-------EcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006774 45 CLRILEQMLRRCLYNVTT-------CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (632)
Q Consensus 45 ir~~L~~lL~~~gy~V~~-------a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIILS 113 (632)
....++..+++.+.+|.. ..+....+..++.. .+|+|++.. ...+...+++.++. ....+++..+
T Consensus 157 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~--~~d~i~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~ 229 (345)
T cd06338 157 VAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAA--GPDAVVVAG--HFPDAVLLVRQMKELGYNPKALYMT 229 (345)
T ss_pred HHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhc--CCCEEEECC--cchhHHHHHHHHHHcCCCCCEEEEe
Confidence 345556666666766542 12334445555543 378887753 23355666676653 3445555443
No 333
>PLN02335 anthranilate synthase
Probab=25.34 E-value=88 Score=31.90 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=45.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecC-C-CCCCHHHHHHHHhc-cCCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH-M-PDMDGFKLLEHIGL-EMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~-M-PdmdGleLL~~Lr~-~~~iP 108 (632)
...+|||||-...+-..+.+.|++.++.+..+......++.+... .||.||+-=. + |...+ ...+.++. ...+|
T Consensus 17 ~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~--~~d~iVisgGPg~p~d~~-~~~~~~~~~~~~~P 93 (222)
T PLN02335 17 QNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRK--NPRGVLISPGPGTPQDSG-ISLQTVLELGPLVP 93 (222)
T ss_pred ccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhc--CCCEEEEcCCCCChhhcc-chHHHHHHhCCCCC
Confidence 356899999777777788899998888777655421112222222 3777776421 1 21112 12333432 34688
Q ss_pred EEEEe
Q 006774 109 VIMMS 113 (632)
Q Consensus 109 IIILS 113 (632)
|+-+.
T Consensus 94 iLGIC 98 (222)
T PLN02335 94 LFGVC 98 (222)
T ss_pred EEEec
Confidence 87765
No 334
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=25.23 E-value=4.8e+02 Score=28.54 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=40.0
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEc---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006774 34 LRVLVVDDDIT----CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (632)
Q Consensus 34 lrVLIVDDd~~----ir~~L~~lL~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~ 100 (632)
-|+|||-|... ..+.+...|+..+.++..+. +..++.+.+++.. +|.||- ..+..-+++.+.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGG--CDVIIA---LGGGSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHHH
Confidence 47888887643 33557777877676665443 2445666666654 898774 346666776666
Q ss_pred H
Q 006774 101 I 101 (632)
Q Consensus 101 L 101 (632)
+
T Consensus 99 i 99 (375)
T cd08194 99 I 99 (375)
T ss_pred H
Confidence 5
No 335
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=25.17 E-value=1.8e+02 Score=30.74 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=41.8
Q ss_pred HHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCC
Q 006774 73 LRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (632)
Q Consensus 73 L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~ 138 (632)
+.+.. ||++|+=---+..-|-.-++.+-...++|.|+++...... ..++++..-.+|+.-+.+
T Consensus 55 ~~~~~--pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 55 LKEWD--PDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK-AKDALEEEGFGYIIVKAD 117 (276)
T ss_dssp HHHH----SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS
T ss_pred HHhhC--CCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh-hHHHHHhcCCcEEEEecC
Confidence 44554 8988875544556688888887666899999999866555 467887777888876654
No 336
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=25.11 E-value=4.6e+02 Score=27.26 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=35.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-----CeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCC
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCL-----YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~g-----y~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MP 90 (632)
.+|.+||-++.+.+..++.+.... -.+. ...++.+.+ +.....+|+||+|..-|
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l---~~~~~~yDvIi~D~~~~ 156 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFL---ADTENTFDVIIVDSTDP 156 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHH---HhCCCCccEEEEeCCCC
Confidence 579999999999888888775421 1121 334554444 33334699999997644
No 337
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.03 E-value=1.9e+02 Score=36.01 Aligned_cols=72 Identities=18% Similarity=0.336 Sum_probs=49.2
Q ss_pred CceEEEEe-cCCCCCCHHHH-HHHHhccC-CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 79 CFDVVLSD-VHMPDMDGFKL-LEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 79 ~pDLVILD-i~MPdmdGleL-L~~Lr~~~-~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
.+-|+|+| ++|-..+.++. ++.|..-+ .+.+|+.|.. ...+...+...+.-|-.||++.+++...+++++..
T Consensus 119 k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe--~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC--chhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 47899999 66665556554 44443322 3556665543 33455667777788999999999999999888765
No 338
>PLN02823 spermine synthase
Probab=24.99 E-value=1.5e+02 Score=32.30 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=37.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-----CCeE-EEEcCHHHHHHHHHHcCCCceEEEEecCCC
Q 006774 34 LRVLVVDDDITCLRILEQMLRRC-----LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~-----gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MP 90 (632)
.+|.+||=|+.+.+..++.+... .-.+ ....|+.+.+ +.....+|+||+|+.-|
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEKFDVIIGDLADP 187 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCCccEEEecCCCc
Confidence 57999999999999999887532 1122 2455555544 44444699999997544
No 339
>PRK05670 anthranilate synthase component II; Provisional
Probab=24.99 E-value=98 Score=30.37 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=33.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEE
Q 006774 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (632)
Q Consensus 36 VLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIL 85 (632)
|||||-....-..+.+.|++.|+++..........+.+... .||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEAL--NPDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhC--CCCEEEE
Confidence 89999999999999999999888876654432112222222 2787777
No 340
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=24.91 E-value=7.8e+02 Score=25.39 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=64.7
Q ss_pred HHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHH-------HHHhccCCCcEEEEecCCCHH
Q 006774 47 RILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL-------EHIGLEMDLPVIMMSADGRVS 119 (632)
Q Consensus 47 ~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL-------~~Lr~~~~iPIIILSa~~d~e 119 (632)
..+.+.+++.|..+..+-....-++.+.......|++|+=..-|+..|-.+. ++||.......|=+-+--..+
T Consensus 102 ~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ 181 (224)
T KOG3111|consen 102 AELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPS 181 (224)
T ss_pred HHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCcc
Confidence 4455566666777765544333333332222247888887777888776554 445644444555566666677
Q ss_pred HHHHHHhcCCcEEEe-----CCCCHHHHHHHHHHHHHh
Q 006774 120 AVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (632)
Q Consensus 120 ~~~eAl~~GA~DYL~-----KP~~~eeL~~~L~~vlr~ 152 (632)
.+.++.++||+-.+. +.-++.+..+.++...++
T Consensus 182 ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~ 219 (224)
T KOG3111|consen 182 TIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEK 219 (224)
T ss_pred hHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhh
Confidence 888999999986543 334667776666665543
No 341
>PRK05637 anthranilate synthase component II; Provisional
Probab=24.87 E-value=1.3e+02 Score=30.53 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=45.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEe--cCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD--VHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILD--i~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
-||||||-...+...+...|+..++.+..+..... ++.+... .||.||+- -.-|...+ +..+.++. ...+||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~~--~~~~iIlsgGPg~~~d~~-~~~~li~~~~~~~PiL 77 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILAA--NPDLICLSPGPGHPRDAG-NMMALIDRTLGQIPLL 77 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHhc--CCCEEEEeCCCCCHHHhh-HHHHHHHHHhCCCCEE
Confidence 37999999988888999999998887776655322 2223222 37888872 22221111 12223321 2368887
Q ss_pred EEe
Q 006774 111 MMS 113 (632)
Q Consensus 111 ILS 113 (632)
-+.
T Consensus 78 GIC 80 (208)
T PRK05637 78 GIC 80 (208)
T ss_pred EEc
Confidence 765
No 342
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=24.73 E-value=2.4e+02 Score=29.63 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCCceEEEEecCC----CC---CCHHHHHHHHhccCCCcEEEEecC-CC-----HHHHHHHHhcCCcE-
Q 006774 66 AAVALDILRERKGCFDVVLSDVHM----PD---MDGFKLLEHIGLEMDLPVIMMSAD-GR-----VSAVMRGIRHGACD- 131 (632)
Q Consensus 66 g~eALe~L~e~~~~pDLVILDi~M----Pd---mdGleLL~~Lr~~~~iPIIILSa~-~d-----~e~~~eAl~~GA~D- 131 (632)
...|++.+++. +..+++|+.... |. .--+..+..++...++||++-+++ .. ......|+..||++
T Consensus 148 ~~~Ave~i~~~-Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl 226 (260)
T TIGR01361 148 WLYAAEYILSS-GNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGL 226 (260)
T ss_pred HHHHHHHHHHc-CCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEE
Confidence 44566777654 346899998622 21 113455566665567999984444 33 44556788999998
Q ss_pred EEeCCCCHH
Q 006774 132 YLIKPIREE 140 (632)
Q Consensus 132 YL~KP~~~e 140 (632)
++.|-++++
T Consensus 227 ~iE~H~t~d 235 (260)
T TIGR01361 227 MIEVHPDPE 235 (260)
T ss_pred EEEeCCCcc
Confidence 666655443
No 343
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=24.51 E-value=1.3e+02 Score=31.71 Aligned_cols=53 Identities=21% Similarity=0.301 Sum_probs=38.7
Q ss_pred HHHHHHHHh-ccCCCcEEEEecCC------CHHHHHHHHhcCCcEEEeCCCCHHHHHHHH
Q 006774 94 GFKLLEHIG-LEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (632)
Q Consensus 94 GleLL~~Lr-~~~~iPIIILSa~~------d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L 146 (632)
.+++++++| ...++|+|+||-.. -.....++-++|+++.|.-.+..+|-....
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~ 133 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELR 133 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHH
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHH
Confidence 477888888 77899999998643 234566677899999999877776654433
No 344
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=24.46 E-value=7.4e+02 Score=26.11 Aligned_cols=101 Identities=12% Similarity=0.055 Sum_probs=60.1
Q ss_pred CcEEEEEeCC-HHHHHHHHHHHHhCCCeEE---EEcCHHHHHHHHHHcCCCceEEEEecCCCCCC---------HHHHHH
Q 006774 33 GLRVLVVDDD-ITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPDMD---------GFKLLE 99 (632)
Q Consensus 33 glrVLIVDDd-~~ir~~L~~lL~~~gy~V~---~a~sg~eALe~L~e~~~~pDLVILDi~MPdmd---------GleLL~ 99 (632)
|..-+||-|. ......+...+++.+...+ .-++..+-++.+.+....|=.++. .++.. -.++++
T Consensus 119 GvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS---~~GvTG~~~~~~~~~~~~i~ 195 (263)
T CHL00200 119 GVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVS---TTGVTGLKTELDKKLKKLIE 195 (263)
T ss_pred CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEc---CCCCCCCCccccHHHHHHHH
Confidence 4444444444 4445566666777765433 233344555555544322333333 23322 245666
Q ss_pred HHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 100 HIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 100 ~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
++|...+.||.+=-+-.+.+.+.++.++|||+.+.-.
T Consensus 196 ~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 196 TIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 7777778899885556678888888899999999874
No 345
>PRK04457 spermidine synthase; Provisional
Probab=24.41 E-value=4.1e+02 Score=27.73 Aligned_cols=52 Identities=13% Similarity=0.078 Sum_probs=36.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC--CeE-EEEcCHHHHHHHHHHcCCCceEEEEec
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCL--YNV-TTCSQAAVALDILRERKGCFDVVLSDV 87 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~g--y~V-~~a~sg~eALe~L~e~~~~pDLVILDi 87 (632)
..+|.+||=++.+.+..++.+...+ -.+ ....++.+.+. .....+|+|++|.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~---~~~~~yD~I~~D~ 144 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA---VHRHSTDVILVDG 144 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH---hCCCCCCEEEEeC
Confidence 4689999999999999888875322 233 24566666554 3334699999996
No 346
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=24.40 E-value=5.1e+02 Score=27.53 Aligned_cols=84 Identities=18% Similarity=0.331 Sum_probs=57.0
Q ss_pred EcCHHHHHHHHHHcCCCceEEEEec---C-C----CCCCHHHHHHHHhccCCCcEEEEecC-CCHHHHHHHHhcCCcEEE
Q 006774 63 CSQAAVALDILRERKGCFDVVLSDV---H-M----PDMDGFKLLEHIGLEMDLPVIMMSAD-GRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVILDi---~-M----PdmdGleLL~~Lr~~~~iPIIILSa~-~d~e~~~eAl~~GA~DYL 133 (632)
+++.++|.+..++.. +|.+-+.+ + + |.. ++++++.|++..++|+++.-+. -+.+...+++++|++..=
T Consensus 152 ~t~~eea~~f~~~tg--vD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 152 LADPDEAEQFVKETG--VDYLAAAIGTSHGKYKGEPGL-DFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKIN 228 (282)
T ss_pred cCCHHHHHHHHHHHC--cCEEeeccCccccccCCCCcc-CHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 568899998887443 78777542 1 1 222 5899999987778999888633 345667889999998775
Q ss_pred eCCCCHHHHHHHHHHHHHhh
Q 006774 134 IKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 134 ~KP~~~eeL~~~L~~vlr~~ 153 (632)
.- .+|+.++...++..
T Consensus 229 v~----T~l~~a~~~~~~~~ 244 (282)
T TIGR01859 229 ID----TDCRIAFTAAIRKV 244 (282)
T ss_pred EC----cHHHHHHHHHHHHH
Confidence 54 34555555555543
No 347
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.35 E-value=6e+02 Score=29.95 Aligned_cols=55 Identities=24% Similarity=0.218 Sum_probs=35.1
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecC
Q 006774 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH 88 (632)
Q Consensus 33 glrVLIVDDd~~i---r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~ 88 (632)
+.+|.+|+-|..- .+.++.+-+..++.+..+.+..+..+.++... .+|+||+|.-
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-~~DLVLIDTa 437 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-DYKLVLIDTA 437 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-cCCEEEecCC
Confidence 4578888876522 23344333444666777777777777776543 5899999963
No 348
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=24.20 E-value=8.9e+02 Score=25.82 Aligned_cols=107 Identities=17% Similarity=0.187 Sum_probs=62.5
Q ss_pred cEEEEEeCC---H-HHHHHHHHHHHhCCC--eEEEEc--CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 006774 34 LRVLVVDDD---I-TCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (632)
Q Consensus 34 lrVLIVDDd---~-~ir~~L~~lL~~~gy--~V~~a~--sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~ 105 (632)
++++|+.+. . ...+.++.+.+..+. .|.... +.++..+++.. .|+.++-.. .+.-|+-+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~-~E~~g~~~lEAma--~ 325 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSY-NESFGLVAMEAQA--C 325 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCC-CCCcChHHHHHHH--c
Confidence 566666531 1 333445555555432 233222 33455555542 476665432 2334666666664 4
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 106 ~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.+|||.... .. ..+.+..|..+++..|-+.+++.+++.+++.
T Consensus 326 G~Pvi~~~~-~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 326 GTPVVAARV-GG---LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred CCCEEEecC-CC---cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 678876443 22 2345667888999999999999999988764
No 349
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=24.16 E-value=3.8e+02 Score=28.95 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=46.7
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCeEEE--------EcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006774 34 LRVLVVDDDITC---LRILEQMLRRCLYNVTT--------CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 34 lrVLIVDDd~~i---r~~L~~lL~~~gy~V~~--------a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr 102 (632)
-|+|||-|.... .+.+...|+..+..+.. ..+..++.+.+++.. +|+||- +.+..-+++.+.+.
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGS~iD~aK~ia 97 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNG--ADVVIG---IGGGKTLDTAKAVA 97 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcC--CCEEEE---ecCchhhHHHHHHH
Confidence 588888876443 34455556655544321 123445666666544 898775 56777788888876
Q ss_pred ccCCCcEEEEe
Q 006774 103 LEMDLPVIMMS 113 (632)
Q Consensus 103 ~~~~iPIIILS 113 (632)
....+|+|.+-
T Consensus 98 ~~~~~P~iaIP 108 (351)
T cd08170 98 DYLGAPVVIVP 108 (351)
T ss_pred HHcCCCEEEeC
Confidence 54567877764
No 350
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=24.14 E-value=4.6e+02 Score=28.93 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=41.4
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEc---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006774 34 LRVLVVDDDIT----CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (632)
Q Consensus 34 lrVLIVDDd~~----ir~~L~~lL~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~ 100 (632)
-|+|||-|... ..+.+...|+..+..+..+. +.+++.+.+++.. +|+||- ..+.+-++..+.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~--~D~Iia---iGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENN--CDSVIS---LGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcC--CCEEEE---eCCchHHHHHHH
Confidence 48999988633 34567777877776655443 3456777777654 898874 346666776666
Q ss_pred H
Q 006774 101 I 101 (632)
Q Consensus 101 L 101 (632)
+
T Consensus 107 i 107 (383)
T PRK09860 107 I 107 (383)
T ss_pred H
Confidence 5
No 351
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=24.11 E-value=4.9e+02 Score=26.83 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=53.6
Q ss_pred cCHHHHHHHHHHcCCCceEEEEecCCCC---CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 64 SQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 64 ~sg~eALe~L~e~~~~pDLVILDi~MPd---mdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
.+..+..+.+.+.. --.++++|+.-.. ..-++++++|+....+||++--+-.+.+.+.+++..||+..+.-.
T Consensus 30 ~dp~~~a~~~~~~G-~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt 104 (254)
T TIGR00735 30 GDPVELAQRYDEEG-ADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINT 104 (254)
T ss_pred CCHHHHHHHHHHcC-CCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 46777777666532 2468899987553 224677888876678999998888899999999999998877653
No 352
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=23.96 E-value=2.3e+02 Score=34.79 Aligned_cols=72 Identities=19% Similarity=0.367 Sum_probs=49.5
Q ss_pred CceEEEEe-cCCCCCCHHH-HHHHHhccC-CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 79 CFDVVLSD-VHMPDMDGFK-LLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 79 ~pDLVILD-i~MPdmdGle-LL~~Lr~~~-~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
.+.|+|+| ++|-...++. |++.|..-+ .+.+|++|. +.+.+...++.-+.-|-.++++.++|...|..++++
T Consensus 120 ~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt--~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT--EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred CceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC--ChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 47888888 5665556665 445555433 455666663 334466777777888889999999999988887754
No 353
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=23.94 E-value=5.6e+02 Score=27.86 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=41.1
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEEc---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHH
Q 006774 34 LRVLVVDDDITCL-----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (632)
Q Consensus 34 lrVLIVDDd~~ir-----~~L~~lL~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~ 99 (632)
-|+|||-|..... +.+...|+..+.++..+. +..++.+.+++.. +|+||- ..+..-+++.+
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~aK 100 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFN--ADFVIG---IGGGSPLDAAK 100 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHH
Confidence 5899998875522 557777877776655443 2445666666654 898875 45666677776
Q ss_pred HH
Q 006774 100 HI 101 (632)
Q Consensus 100 ~L 101 (632)
.+
T Consensus 101 ~i 102 (357)
T cd08181 101 AI 102 (357)
T ss_pred HH
Confidence 54
No 354
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=23.93 E-value=2.3e+02 Score=29.87 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=51.5
Q ss_pred CCCeEEEEcCHH-----HHH---H-HHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHh
Q 006774 56 CLYNVTTCSQAA-----VAL---D-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR 126 (632)
Q Consensus 56 ~gy~V~~a~sg~-----eAL---e-~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~ 126 (632)
.+.++..+.++. ++- . .+++.. ||++|+=---|..-|-.-.+++-...++|.|+++........ ++++
T Consensus 30 edI~vrv~gsGaKm~pe~~~~~~~~~~~~~~--pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~-d~l~ 106 (277)
T PRK00994 30 EDIDVRVVGSGAKMGPEEVEEVVKKMLEEWK--PDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVK-DAME 106 (277)
T ss_pred cCceEEEeccCCCCCHHHHHHHHHHHHHhhC--CCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchH-HHHH
Confidence 366666666542 222 2 334444 898887544445567776777755678899999987776544 7787
Q ss_pred cCCcEEEeCCCC
Q 006774 127 HGACDYLIKPIR 138 (632)
Q Consensus 127 ~GA~DYL~KP~~ 138 (632)
..-.+|+.-+.+
T Consensus 107 ~~g~GYIivk~D 118 (277)
T PRK00994 107 EQGLGYIIVKAD 118 (277)
T ss_pred hcCCcEEEEecC
Confidence 777778766544
No 355
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=23.72 E-value=8e+02 Score=27.81 Aligned_cols=55 Identities=27% Similarity=0.350 Sum_probs=31.9
Q ss_pred CCcEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEc---CHH----HHHHHHHHcCCCceEEEEecC
Q 006774 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QAA----VALDILRERKGCFDVVLSDVH 88 (632)
Q Consensus 32 ~glrVLIVDDd~~---ir~~L~~lL~~~gy~V~~a~---sg~----eALe~L~e~~~~pDLVILDi~ 88 (632)
.+.+|++||-|.. ..+.++.+....+..+..+. +.. ++++.+... .+|+||+|.-
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~--~~DvVIIDTa 191 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKEN--GFDVVIVDTA 191 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCC
Confidence 3578999998842 33444444454555555433 232 334444333 4899999973
No 356
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=23.65 E-value=7.9e+02 Score=26.01 Aligned_cols=70 Identities=19% Similarity=0.121 Sum_probs=47.6
Q ss_pred EcCHHHHHHHHHHcCCCceEEEEecCC-----CCCCHHHHHHHHhcc--CCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 63 CSQAAVALDILRERKGCFDVVLSDVHM-----PDMDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVILDi~M-----PdmdGleLL~~Lr~~--~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+.+.++|..+... ..|.|.+.-+- .+...++++.+++.. .++|||.-.+-.+...+.+++..||+....=
T Consensus 180 v~s~~~a~~a~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 180 ILTPEDALRAVDA---GADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIG 256 (299)
T ss_pred cCCHHHHHHHHHC---CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 3566666554432 37877775432 123456777777542 2699999888889999999999999987653
No 357
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=23.64 E-value=5.6e+02 Score=28.25 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=50.8
Q ss_pred EEEcCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-------mdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
.++.+.+++.+.... .+|.|++.-..+. .-|++.++++.....+||+.+-+- +.+.+.+.+..|++++-
T Consensus 245 ~S~Hs~~e~~~A~~~---GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI-~~~ni~~l~~~Ga~gVA 320 (347)
T PRK02615 245 RSTTNPEEMAKAIAE---GADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGI-DKSNIPEVLQAGAKRVA 320 (347)
T ss_pred EecCCHHHHHHHHHc---CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCcEEE
Confidence 467778887766543 3799987654442 247899999876677999988665 46677788899998874
Q ss_pred e
Q 006774 134 I 134 (632)
Q Consensus 134 ~ 134 (632)
.
T Consensus 321 v 321 (347)
T PRK02615 321 V 321 (347)
T ss_pred E
Confidence 3
No 358
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=23.47 E-value=2.5e+02 Score=28.85 Aligned_cols=75 Identities=15% Similarity=0.069 Sum_probs=42.7
Q ss_pred cEEEEEeCCH------HHHHHHHHHHHhCCCeEEEEcCHH-HHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCC
Q 006774 34 LRVLVVDDDI------TCLRILEQMLRRCLYNVTTCSQAA-VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (632)
Q Consensus 34 lrVLIVDDd~------~ir~~L~~lL~~~gy~V~~a~sg~-eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~ 106 (632)
||||++-... .....+...|.+.|++|....... .....+... .||+|.+-.-....-.+..+..+. ..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~--~~diih~~~~~~~~~~~~~~~~~~--~~ 76 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEII--NADIVHLHWIHGGFLSIEDLSKLL--DR 76 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhcc--cCCEEEEEccccCccCHHHHHHHH--cC
Confidence 5777776553 455667777777888876544333 333444443 499998754333333334444432 45
Q ss_pred CcEEEE
Q 006774 107 LPVIMM 112 (632)
Q Consensus 107 iPIIIL 112 (632)
+|+|+.
T Consensus 77 ~~~v~~ 82 (365)
T cd03825 77 KPVVWT 82 (365)
T ss_pred CCEEEE
Confidence 676654
No 359
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=23.44 E-value=5.1e+02 Score=28.37 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCeEEEEcC---------HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006774 34 LRVLVVDDDITC----LRILEQMLRRCLYNVTTCSQ---------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (632)
Q Consensus 34 lrVLIVDDd~~i----r~~L~~lL~~~gy~V~~a~s---------g~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~ 100 (632)
-|+|||.|.... .+.++..|+..+.++..+.. .+++.+.+++.. +|+||- ..+..-+++.+.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEG--CDFIIS---IGGGSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcC--CCEEEE---eCCcHHHHHHHH
Confidence 489999886543 34677778776766655532 345666666544 898874 345566776665
Q ss_pred H
Q 006774 101 I 101 (632)
Q Consensus 101 L 101 (632)
+
T Consensus 104 i 104 (377)
T cd08176 104 I 104 (377)
T ss_pred H
Confidence 5
No 360
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=23.26 E-value=6.8e+02 Score=25.57 Aligned_cols=105 Identities=15% Similarity=0.218 Sum_probs=55.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC--CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPII 110 (632)
.++++|+.+.+.. +.++..+...+ ..+.......+..+++.. .|++++-... +.-|..+++.+. ..+|+|
T Consensus 219 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~-e~~~~~~~Ea~a--~G~PvI 290 (360)
T cd04951 219 DIKLLIAGDGPLR-ATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAW-EGFGLVVAEAMA--CELPVV 290 (360)
T ss_pred CeEEEEEcCCCcH-HHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccc-cCCChHHHHHHH--cCCCEE
Confidence 3567777665432 34444454433 223333333343444432 4666654332 223566666664 356777
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
+ +.... ..+.+.. .+++..+-+.+++.+.+..+++
T Consensus 291 ~-~~~~~---~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 291 A-TDAGG---VREVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred E-ecCCC---hhhEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 5 32222 2222222 5678888999999999988763
No 361
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=23.03 E-value=1.7e+02 Score=29.17 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=35.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIL 85 (632)
|||+|||-..-....+.+.|++.|+++....+..+ +. .+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~~----~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----IL----DADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----Hc----cCCEEEE
Confidence 68999999988889999999999999887765422 21 3898887
No 362
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=22.98 E-value=4.4e+02 Score=26.53 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=52.4
Q ss_pred EcCHHHHHHHHHHcCCCceEEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 63 CSQAAVALDILRERKGCFDVVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVILDi~MPdm---dGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
..+..++.+.+.+.. .-.++++|+.--+. .-+++++++.....+|+++=.+-.+.+.+.++++.|++..+.-.
T Consensus 29 ~~dp~~~a~~~~~~g-~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~ 104 (232)
T TIGR03572 29 IGDPVNAARIYNAKG-ADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINT 104 (232)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 347777777776543 22589999876532 24677888876678899887777788888888899998776653
No 363
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=22.79 E-value=4.6e+02 Score=27.22 Aligned_cols=68 Identities=16% Similarity=0.294 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCC-CCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHH-hcCCcEEEe
Q 006774 66 AAVALDILRERKGCFDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGI-RHGACDYLI 134 (632)
Q Consensus 66 g~eALe~L~e~~~~pDLVILDi~MPd-mdG--leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl-~~GA~DYL~ 134 (632)
..+..+.+.+.. .-.+++.|+.-.+ +.| ++++++++....+|||.-.+-.+.+.+.+++ ..|+++.+.
T Consensus 154 ~~e~~~~~~~~g-~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 154 PLELAKEYEALG-AGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred HHHHHHHHHHcC-CCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 445555555432 2358888875432 223 6778888777889999988888999999998 789987654
No 364
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=22.75 E-value=3.9e+02 Score=27.70 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=46.6
Q ss_pred cccccCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhCCC----eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHH-
Q 006774 21 AADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLY----NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF- 95 (632)
Q Consensus 21 ~~~~~~p~~~p~glrVLIVDDd~~ir~~L~~lL~~~gy----~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGl- 95 (632)
+..+........|-.|-|++|+.. +...+..|...+. ++...+..++++..+. ..|.+++|... .|-.
T Consensus 58 tiaLaaAAr~TgGR~vCIvp~~~~-~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~----~iDF~vVDc~~--~d~~~ 130 (218)
T PF07279_consen 58 TIALAAAARQTGGRHVCIVPDEQS-LSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK----GIDFVVVDCKR--EDFAA 130 (218)
T ss_pred HHHHHHHHHhcCCeEEEEcCChhh-HHHHHHHHhhccccccceEEecCCHHHHHhhcc----CCCEEEEeCCc--hhHHH
Confidence 333333333344545666666555 4455555554442 3444445666665542 48999999985 3444
Q ss_pred HHHHHHhccCCCcEEE
Q 006774 96 KLLEHIGLEMDLPVIM 111 (632)
Q Consensus 96 eLL~~Lr~~~~iPIII 111 (632)
++++.++..+.--|++
T Consensus 131 ~vl~~~~~~~~GaVVV 146 (218)
T PF07279_consen 131 RVLRAAKLSPRGAVVV 146 (218)
T ss_pred HHHHHhccCCCceEEE
Confidence 6777666544444444
No 365
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=22.70 E-value=6.3e+02 Score=29.84 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=66.2
Q ss_pred HHHHHHhCCCeEEE--EcCHHHHHHHHHHcCCCceEEEEecCCC-C----CCHHHHHHHHh---ccCCCcEEEEecCCCH
Q 006774 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMP-D----MDGFKLLEHIG---LEMDLPVIMMSADGRV 118 (632)
Q Consensus 49 L~~lL~~~gy~V~~--a~sg~eALe~L~e~~~~pDLVILDi~MP-d----mdGleLL~~Lr---~~~~iPIIILSa~~d~ 118 (632)
....|+..|+.+.. +.++-..+..+.... ||.|=+|-.+- + .....+++.|. ...++.+| ..+-.+.
T Consensus 683 ~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l~--~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi-a~gVe~~ 759 (799)
T PRK11359 683 RIQILRDMGVGLSVDDFGTGFSGLSRLVSLP--VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV-AEGVETK 759 (799)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHHhhCC--CCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE-EEcCCCH
Confidence 44457777888754 567777788887654 99999997542 1 12344555552 33455554 4566777
Q ss_pred HHHHHHHhcCCcE----EEeCCCCHHHHHHHHHH
Q 006774 119 SAVMRGIRHGACD----YLIKPIREEELKNIWQH 148 (632)
Q Consensus 119 e~~~eAl~~GA~D----YL~KP~~~eeL~~~L~~ 148 (632)
+....+.+.|++. |+.||...++|...++.
T Consensus 760 ~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 760 EQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred HHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 7777788999973 68899999999876543
No 366
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.63 E-value=1.1e+03 Score=26.22 Aligned_cols=66 Identities=21% Similarity=0.266 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCC-------CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 65 QAAVALDILRERKGCFDVVLSDVHM-------PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~M-------PdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+..+..+.+.+. ..|+|.++... +..+..++.+.++. .++|||. ..-.+.+.+.++++.||+..+.
T Consensus 142 ~~~e~a~~l~ea--Gvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEA--GVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHC--CCCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 355555666554 48999997542 11245566665554 5788876 4455677788889999998755
No 367
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=22.38 E-value=3.2e+02 Score=31.20 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCceEEEEecCCC-CCCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 67 AVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 67 ~eALe~L~e~~~~pDLVILDi~MP-dmdGleLL~~Lr~~-~~iPIIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
.++.+.+.+.. +|++++|..-. ...-++.+++|+.. +++|||+ ..-.+.+.+..++++||+...
T Consensus 230 ~e~a~~L~~ag--vdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEAG--VDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHhC--CCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 34555554443 89999997433 33466788888754 5788887 555667788899999998764
No 368
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.23 E-value=5.8e+02 Score=27.05 Aligned_cols=101 Identities=16% Similarity=0.222 Sum_probs=56.6
Q ss_pred cEEEEEeC--C---HHHHHHHHHHHHhCCCeEEEEcCHHHHHHH-----H-HHcCCCceEEEEecCCCCCCHH--HHHHH
Q 006774 34 LRVLVVDD--D---ITCLRILEQMLRRCLYNVTTCSQAAVALDI-----L-RERKGCFDVVLSDVHMPDMDGF--KLLEH 100 (632)
Q Consensus 34 lrVLIVDD--d---~~ir~~L~~lL~~~gy~V~~a~sg~eALe~-----L-~e~~~~pDLVILDi~MPdmdGl--eLL~~ 100 (632)
|||.|+-. . ......+..+|+..++++.......+.... + ......+|+||+ -+.||. +.++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDGTlL~a~~- 75 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIA----IGGDGTILRIEH- 75 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEE----EeCcHHHHHHHH-
Confidence 57777722 2 234455666677778887765332221110 0 000113677766 266773 3344
Q ss_pred HhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 101 IGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 101 Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
+ ...++||+.+.. |-.+|+. .++++++...+.++++...
T Consensus 76 ~-~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~~ 114 (277)
T PRK03708 76 K-TKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEGDY 114 (277)
T ss_pred h-cCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcCCc
Confidence 3 234788887753 3345665 5778999999998887643
No 369
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=22.22 E-value=3.2e+02 Score=28.24 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCC-CCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 65 QAAVALDILRERKGCFDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~MPd-mdG--leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
+..+.+..+... ..+++|++|+.--+ +.| .+++..+.....-||++=-+-...+....+...|+.+.|.-.
T Consensus 138 d~le~Vk~l~~~-~~~~lIvLDi~aVGt~~G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaT 211 (229)
T COG1411 138 DFLETVKDLNYR-RDPGLIVLDIGAVGTKSGPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLGMGVSGVLVAT 211 (229)
T ss_pred hHHHHHHHHhcc-CCCCeEEEEccccccccCCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhcCCCceeeehh
Confidence 333444443333 26899999997653 444 578888876666788877777778888888889999887653
No 370
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=22.15 E-value=9.9e+02 Score=26.52 Aligned_cols=79 Identities=16% Similarity=0.015 Sum_probs=47.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eE-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCC-HHHHHHHHhccCCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLY-NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy-~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmd-GleLL~~Lr~~~~iPII 110 (632)
.+|+-||-++...+..+..+...+. .+ ....+..+.+..+......+|+||+|- |... ..++++.+.....-.+|
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP--Pr~G~~~~~l~~l~~l~~~~iv 392 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP--PRKGCAAEVLRTIIELKPERIV 392 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc--CCCCCCHHHHHHHHhcCCCEEE
Confidence 4799999999998888888776554 22 245666665443222122489999984 3221 35666766432222455
Q ss_pred EEec
Q 006774 111 MMSA 114 (632)
Q Consensus 111 ILSa 114 (632)
.++.
T Consensus 393 yvsc 396 (431)
T TIGR00479 393 YVSC 396 (431)
T ss_pred EEcC
Confidence 5554
No 371
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=22.13 E-value=3.8e+02 Score=27.97 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=41.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EEcCHHHHHHHHHHc---CCCceEEEEecC
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER---KGCFDVVLSDVH 88 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy--~V~-~a~sg~eALe~L~e~---~~~pDLVILDi~ 88 (632)
.-+|.-+|-++...+.-+..++..|+ .|. ...++.+.+..+... ...||+||+|..
T Consensus 104 ~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 104 DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 45899999999998888999988764 232 456677776665432 236999999976
No 372
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.04 E-value=9e+02 Score=25.86 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=57.4
Q ss_pred cEEEEEe--CCHH---HHHHHHHHHHhCCCeEEEEcCHHHHHH-----H--HHHcCCCceEEEEecCCCCCCHH--HHHH
Q 006774 34 LRVLVVD--DDIT---CLRILEQMLRRCLYNVTTCSQAAVALD-----I--LRERKGCFDVVLSDVHMPDMDGF--KLLE 99 (632)
Q Consensus 34 lrVLIVD--Dd~~---ir~~L~~lL~~~gy~V~~a~sg~eALe-----~--L~e~~~~pDLVILDi~MPdmdGl--eLL~ 99 (632)
.+|.||- +.+. ..+.+...|++.++++.......+.+. . .......+|+||+ -+.||. ..++
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt~l~~~~ 80 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGSLLGAAR 80 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHHHHHHHH
Confidence 3577773 2233 344555667677888765443222111 0 0111123677766 256773 3333
Q ss_pred HHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 100 HIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 100 ~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
.+. ..++||+-+.. |-.+||. .++.+++..++..+++..
T Consensus 81 ~~~-~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 81 ALA-RHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDGH 119 (295)
T ss_pred Hhc-CCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcCC
Confidence 332 45788876543 5566774 688999999999998754
No 373
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=21.95 E-value=6.4e+02 Score=26.60 Aligned_cols=90 Identities=13% Similarity=0.076 Sum_probs=0.0
Q ss_pred EEEEeCC-------HHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC--C
Q 006774 36 VLVVDDD-------ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM--D 106 (632)
Q Consensus 36 VLIVDDd-------~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~--~ 106 (632)
|||.|++ ......+++.+.....-...+.+.+++.+.+... +|.|.+|-.-| +.++++.... .
T Consensus 155 vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~g---aDyI~ld~~~~-----e~l~~~~~~~~~~ 226 (268)
T cd01572 155 VLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEAG---ADIIMLDNMSP-----EELREAVALLKGR 226 (268)
T ss_pred eeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcC---CCEEEECCcCH-----HHHHHHHHHcCCC
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+| |..++--+.+.+.+..+.|++.+-.
T Consensus 227 ip-i~AiGGI~~~ni~~~a~~Gvd~Iav 253 (268)
T cd01572 227 VL-LEASGGITLENIRAYAETGVDYISV 253 (268)
T ss_pred Cc-EEEECCCCHHHHHHHHHcCCCEEEE
No 374
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=21.77 E-value=5.2e+02 Score=29.51 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=45.4
Q ss_pred EEEcCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCc
Q 006774 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGAC 130 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-------mdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~ 130 (632)
..+.+.+++...... .+|.|.+.-..|. .-|++.++++.....+||+.+-+- +.+.+.++++.|++
T Consensus 395 ~S~h~~~e~~~a~~~---gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI-~~~~~~~~~~~G~~ 467 (502)
T PLN02898 395 VSCKTPEQAEQAWKD---GADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGI-SASNAASVMESGAP 467 (502)
T ss_pred EeCCCHHHHHHHhhc---CCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCC-CHHHHHHHHHcCCC
Confidence 356677776555432 4788875433332 127888898876678999988654 56777888999988
No 375
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=21.64 E-value=6.7e+02 Score=27.24 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=39.7
Q ss_pred HHHHHHHhccC--CCcEEEEecCCCHHHHHHHHhcCCcEE------EeC-CCCHHHHHHHHHHHHH
Q 006774 95 FKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDY------LIK-PIREEELKNIWQHVVR 151 (632)
Q Consensus 95 leLL~~Lr~~~--~iPIIILSa~~d~e~~~eAl~~GA~DY------L~K-P~~~eeL~~~L~~vlr 151 (632)
++.++.++... ++|||...+-.+.+.+.+.+.+||+.. +.+ |.-..++.+-+.+.++
T Consensus 276 l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 276 TEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR 341 (344)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 34556665443 799999999999999999999999753 444 6555555555555544
No 376
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=21.58 E-value=1.9e+02 Score=32.56 Aligned_cols=62 Identities=27% Similarity=0.358 Sum_probs=43.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHH--HHHHhC------CCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCC
Q 006774 30 FPAGLRVLVVDDDITCLRILE--QMLRRC------LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93 (632)
Q Consensus 30 ~p~glrVLIVDDd~~ir~~L~--~lL~~~------gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmd 93 (632)
+|.-..|-.||=||.+.+..+ ..|+.. .-.|..+. ++|...++.....+|.||+|+--|+..
T Consensus 310 yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--dDAf~wlr~a~~~fD~vIVDl~DP~tp 379 (508)
T COG4262 310 YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--DDAFQWLRTAADMFDVVIVDLPDPSTP 379 (508)
T ss_pred CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe--ccHHHHHHhhcccccEEEEeCCCCCCc
Confidence 355568999999999988877 555543 12344332 467777777666799999998777644
No 377
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=21.39 E-value=3e+02 Score=30.01 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=41.3
Q ss_pred ceEEEEecCCCC-CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 80 FDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 80 pDLVILDi~MPd-mdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
.|+|++|.--.. ..-++.+++|+.....|+|+.-.-...+.+..++++||+.+..-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 699999974332 34577888887665666666555678888999999999988644
No 378
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=21.36 E-value=3.8e+02 Score=31.03 Aligned_cols=64 Identities=19% Similarity=0.124 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCceEEEEecCCCCCC--HHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 67 AVALDILRERKGCFDVVLSDVHMPDMD--GFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 67 ~eALe~L~e~~~~pDLVILDi~MPdmd--GleLL~~Lr~-~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
.+-.+.|.+. ..|+|.+|.-- +.+ -++++++||. .++++||+ ..-...+....++++||+....
T Consensus 250 ~~r~~~l~~a--g~d~i~iD~~~-g~~~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 250 KERLEHLVKA--GVDVVVLDSSQ-GDSIYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred HHHHHHHHHc--CCCEEEEeCCC-CCcHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 3433444443 38999999832 222 3488999975 45666654 3345677788999999998754
No 379
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=21.36 E-value=8e+02 Score=24.24 Aligned_cols=108 Identities=16% Similarity=0.163 Sum_probs=60.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPII 110 (632)
.++++|+.+.+.. ..++..+...+. .+......++..+++.. .|+++.-... +.-|..+++.+. ..+|||
T Consensus 209 ~~~l~i~G~~~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~-e~~~~~~~Ea~a--~G~Pvi 280 (348)
T cd03820 209 DWKLRIVGDGPER-EALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRF-EGFPMVLLEAMA--FGLPVI 280 (348)
T ss_pred CeEEEEEeCCCCH-HHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCccc-cccCHHHHHHHH--cCCCEE
Confidence 3556666654332 233333333322 23333333444444432 5777765444 223556666663 467877
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
........ .+....+..+++.++.+.+++...+..++.
T Consensus 281 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 281 SFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred EecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 54322222 234456678899999999999999998864
No 380
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=21.25 E-value=1.1e+03 Score=25.78 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=50.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC-eE-EEEcCHHHHHHHHHHc------------CCCceEEEEecCCCCCCH--HHHH
Q 006774 35 RVLVVDDDITCLRILEQMLRRCLY-NV-TTCSQAAVALDILRER------------KGCFDVVLSDVHMPDMDG--FKLL 98 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~~gy-~V-~~a~sg~eALe~L~e~------------~~~pDLVILDi~MPdmdG--leLL 98 (632)
+|+.||-++...+..++.+...+. .+ ..+.+..+.+..+... ...||+||+|- | ..| -+++
T Consensus 230 ~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDP--P-R~G~~~~~l 306 (362)
T PRK05031 230 RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDP--P-RAGLDDETL 306 (362)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECC--C-CCCCcHHHH
Confidence 799999999998888888776654 23 3566777766544321 11489999994 3 344 4677
Q ss_pred HHHhccCCCcEEEEecCC
Q 006774 99 EHIGLEMDLPVIMMSADG 116 (632)
Q Consensus 99 ~~Lr~~~~iPIIILSa~~ 116 (632)
+.|.. + -.||.++...
T Consensus 307 ~~l~~-~-~~ivyvSC~p 322 (362)
T PRK05031 307 KLVQA-Y-ERILYISCNP 322 (362)
T ss_pred HHHHc-c-CCEEEEEeCH
Confidence 77754 2 3466666544
No 381
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=21.15 E-value=4.6e+02 Score=28.99 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=44.6
Q ss_pred ceEEEEecCCCCCCHH-HHHHHHhccCCCcEEEEec-CCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 006774 80 FDVVLSDVHMPDMDGF-KLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 80 pDLVILDi~MPdmdGl-eLL~~Lr~~~~iPIIILSa-~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
.+.+|++..-...=-+ .++..+ .....|+.... ..+.....+.++.|+++.+.+|-++.++++....+-
T Consensus 89 ~~~viv~~~dW~iIPlEnlIA~~--~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~~ 159 (344)
T PRK02290 89 VDYVIVEGRDWTIIPLENLIADL--GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALIE 159 (344)
T ss_pred CCEEEEECCCCcEecHHHHHhhh--cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHHh
Confidence 4667776543322222 345555 34455555443 344556677889999999999999999988776553
No 382
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=21.10 E-value=5.2e+02 Score=28.06 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=38.8
Q ss_pred cEEEEEeCCHHHH----HHHHHHHHhCCCeEEEEc---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006774 34 LRVLVVDDDITCL----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (632)
Q Consensus 34 lrVLIVDDd~~ir----~~L~~lL~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~ 100 (632)
-|+|||-|..... +.+...|+..++.+..+. +..++++.+++.. +|+||- +.+..-+++.+.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~d~Iia---iGGGs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEG--CDGVIA---VGGGSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHHH
Confidence 4788888765433 467777776666554432 2345556665543 888764 456666777766
Q ss_pred H
Q 006774 101 I 101 (632)
Q Consensus 101 L 101 (632)
+
T Consensus 99 v 99 (370)
T cd08551 99 I 99 (370)
T ss_pred H
Confidence 5
No 383
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.08 E-value=8.7e+02 Score=25.33 Aligned_cols=93 Identities=15% Similarity=0.214 Sum_probs=57.4
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006774 34 LRVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd--~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIII 111 (632)
|++.|+..+ ......++..|.+.++.+....+.. ......|+||+ -+.||. +++.++.. .+||+-
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~d~vi~----iGGDGT-~L~a~~~~-~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASA-------SGKVTADLIIV----VGGDGT-VLKAAKKV-GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccc-------cccCCCCEEEE----ECCcHH-HHHHHHHc-CCCEEE
Confidence 345555443 3445556666777777766554432 11124688776 366774 34545544 888876
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+. .|-.+||. .++.+++...+.++.+..
T Consensus 68 in-------------~G~lGfl~-~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 68 FK-------------AGRLGFLS-SYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred Ee-------------CCCCcccc-ccCHHHHHHHHHHHHcCC
Confidence 65 34467776 578899999998887754
No 384
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=20.76 E-value=9.5e+02 Score=25.58 Aligned_cols=94 Identities=14% Similarity=0.091 Sum_probs=56.0
Q ss_pred EeCCHHHHHHHHHHHHhCCCeEEE-E-----c---CHHHHHHHHHHcCCCceEEEEecCCC-----CCCHHHHHHHHhcc
Q 006774 39 VDDDITCLRILEQMLRRCLYNVTT-C-----S---QAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLE 104 (632)
Q Consensus 39 VDDd~~ir~~L~~lL~~~gy~V~~-a-----~---sg~eALe~L~e~~~~pDLVILDi~MP-----dmdGleLL~~Lr~~ 104 (632)
..+-....+.++.+-+..++.|.. . . +..+..+.+.+. ..|.|.+.-... +..-++.++.++..
T Consensus 113 ~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~--G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~ 190 (319)
T TIGR00737 113 LRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDA--GAQAVTLHGRTRAQGYSGEANWDIIARVKQA 190 (319)
T ss_pred hCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHh--CCCEEEEEcccccccCCCchhHHHHHHHHHc
Confidence 344455555555554444443321 1 1 123333444443 367776653322 11236778888777
Q ss_pred CCCcEEEEecCCCHHHHHHHH-hcCCcEEEe
Q 006774 105 MDLPVIMMSADGRVSAVMRGI-RHGACDYLI 134 (632)
Q Consensus 105 ~~iPIIILSa~~d~e~~~eAl-~~GA~DYL~ 134 (632)
.++|||...+-.+.+.+.+++ ..||+....
T Consensus 191 ~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 191 VRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 779999988888999999999 567887644
No 385
>PF13487 HD_5: HD domain; PDB: 3TMD_A 3TM8_B 3TMC_A 3TMB_B.
Probab=20.75 E-value=55 Score=26.60 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=12.3
Q ss_pred CCCChHHHHHHHHh-hcC
Q 006774 316 GQIPPQTLAALHAE-LLG 332 (632)
Q Consensus 316 GkL~~ee~~imk~~-~~G 332 (632)
|+||++||++++.| ..|
T Consensus 1 G~Lt~~e~~~~~~Hp~~~ 18 (64)
T PF13487_consen 1 GKLTPEEREIIQQHPEYG 18 (64)
T ss_dssp -GS-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 78999999999984 434
No 386
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=20.65 E-value=7.3e+02 Score=27.64 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=48.1
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 80 pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.|+| -+-.|++...+.++.|+....+|+|.=- +-+...+.+|++.|++..=.-|=+.......++.+++
T Consensus 56 ceiV--Rvav~~~~~a~al~~I~~~~~iPlvADI-HFd~~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~ 124 (360)
T PRK00366 56 CEIV--RVAVPDMEAAAALPEIKKQLPVPLVADI-HFDYRLALAAAEAGADALRINPGNIGKRDERVREVVE 124 (360)
T ss_pred CCEE--EEccCCHHHHHhHHHHHHcCCCCEEEec-CCCHHHHHHHHHhCCCEEEECCCCCCchHHHHHHHHH
Confidence 4544 4456888888888888877778887533 4567788999999999998888544443444444443
No 387
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=20.49 E-value=6.1e+02 Score=26.06 Aligned_cols=98 Identities=9% Similarity=-0.002 Sum_probs=59.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEE---EcCHHHHHHHHHHcCCCceEEEEecCCCC--------CCHHHHHHHHhcc
Q 006774 36 VLVVDDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLE 104 (632)
Q Consensus 36 VLIVDDd~~ir~~L~~lL~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVILDi~MPd--------mdGleLL~~Lr~~ 104 (632)
|++.|-.......+...+++.+..... ..+..+.++.+.... .|.|++=-.+|. .+..+.++++|..
T Consensus 108 iiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~--~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 108 LIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELA--SGFIYYVSRTGVTGARTELPDDLKELIKRIRKY 185 (242)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhC--CCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc
Confidence 445455555555566666776754432 223344555554422 343332112332 2345777888776
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 105 ~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
.++||++=.+-...+.+.++.++ |+.++.-.
T Consensus 186 ~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 186 TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred CCCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 78999987777777788888888 99998863
No 388
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.40 E-value=5.5e+02 Score=26.62 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=53.5
Q ss_pred EcCHHHHHHHHHHcCCCceEEEEecCCCCC-C--HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 63 CSQAAVALDILRERKGCFDVVLSDVHMPDM-D--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVILDi~MPdm-d--GleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
..+..+..+.+.... --.++++|+.-.++ . -++++++|.....+||++=.+-.+.+.+.+++..|++.++.-
T Consensus 29 ~~dp~~~a~~~~~~g-~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 29 IGDPINAVRIFNEKE-VDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 346777666666543 23699999977642 2 378899997667899988777778888888889999987765
No 389
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.22 E-value=4.9e+02 Score=26.67 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCC-CCHHHHHHHH-hccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 65 QAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~MPd-mdGleLL~~L-r~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+..++++.+.+.. -.+|++|+.--+ +.|++ .+ +...++|+|.--+-.+.+...++.+.|+++.+.
T Consensus 144 ~~~~~~~~~~~~~--~~ii~t~i~~dGt~~G~d---~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 144 KVEDAYEMLKNYV--NRFIYTSIERDGTLTGIE---EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CHHHHHHHHHHHh--CEEEEEeccchhcccCHH---HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 4456666665542 479999998765 46777 33 222579999988888888898988999998765
No 390
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=20.22 E-value=4.1e+02 Score=25.93 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=55.8
Q ss_pred HHHHHHhCCCeEEE--EcCHHHHHHHHHHcCCCceEEEEecCCC-C----CCHHHHHHHHh---ccCCCcEEEEecCCCH
Q 006774 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMP-D----MDGFKLLEHIG---LEMDLPVIMMSADGRV 118 (632)
Q Consensus 49 L~~lL~~~gy~V~~--a~sg~eALe~L~e~~~~pDLVILDi~MP-d----mdGleLL~~Lr---~~~~iPIIILSa~~d~ 118 (632)
+...|+..|+.+.. +......++.+.... ||.|-+|..+. + .....+++.+. ...++++| .++-.+.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~~ 213 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKRLP--VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVV-AEGVETE 213 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHhCC--CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEE-EEecCCH
Confidence 34445666887764 455666677777654 99999996543 1 22345555552 23445544 5677778
Q ss_pred HHHHHHHhcCCc----EEEeCCCCH
Q 006774 119 SAVMRGIRHGAC----DYLIKPIRE 139 (632)
Q Consensus 119 e~~~eAl~~GA~----DYL~KP~~~ 139 (632)
+....+.+.|++ .|+.||...
T Consensus 214 ~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 214 EQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHcCCCeeeeceeccCCCC
Confidence 888888899985 356677654
No 391
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=20.19 E-value=55 Score=28.63 Aligned_cols=23 Identities=43% Similarity=0.796 Sum_probs=13.8
Q ss_pred cccCccccccCCCcccccccccc
Q 006774 431 PSRSSASFQAGNSPASVNQSCSF 453 (632)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~ 453 (632)
|....++|.||.+++.|.|+|.-
T Consensus 36 p~~~~a~fPAg~~~~DieqaCa~ 58 (80)
T PF11895_consen 36 PLTGKAHFPAGKSPADIEQACAS 58 (80)
T ss_dssp S-SSSSEBGTT--GGGB--S-SS
T ss_pred CCCCCcccCCCCCHHHHHhhccC
Confidence 44555999999999999999943
No 392
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=20.14 E-value=2.7e+02 Score=28.34 Aligned_cols=72 Identities=10% Similarity=0.005 Sum_probs=48.6
Q ss_pred CCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCC--CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP--DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 57 gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MP--dmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
++.|....+.+++.+++.. ..|+|=+|...- ...--+++++|+... .++|..-...+....|.++|+| ++.
T Consensus 45 ~~~V~ITPT~~ev~~l~~a---GadIIAlDaT~R~Rp~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~G~D-~I~ 117 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEA---GADIIALDATDRPRPETLEELIREIKEKY---QLVMADISTLEEAINAAELGFD-IIG 117 (192)
T ss_dssp TSS--BS-SHHHHHHHHHC---T-SEEEEE-SSSS-SS-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHTT-S-EEE
T ss_pred CCCeEECCCHHHHHHHHHc---CCCEEEEecCCCCCCcCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHcCCC-EEE
Confidence 4677788888898888764 379999998653 266778888887655 6677777888999999999975 554
Q ss_pred C
Q 006774 135 K 135 (632)
Q Consensus 135 K 135 (632)
-
T Consensus 118 T 118 (192)
T PF04131_consen 118 T 118 (192)
T ss_dssp -
T ss_pred c
Confidence 3
No 393
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=20.13 E-value=8e+02 Score=26.41 Aligned_cols=95 Identities=11% Similarity=0.089 Sum_probs=57.9
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEE------EcC---HHHHHHHHHHcCCCceEEEEecCC-C----CCCHHHHHHHHhc
Q 006774 38 VVDDDITCLRILEQMLRRCLYNVTT------CSQ---AAVALDILRERKGCFDVVLSDVHM-P----DMDGFKLLEHIGL 103 (632)
Q Consensus 38 IVDDd~~ir~~L~~lL~~~gy~V~~------a~s---g~eALe~L~e~~~~pDLVILDi~M-P----dmdGleLL~~Lr~ 103 (632)
++.|-..+.+.++.+-....+.|.. ..+ ..+..+.+.+. ..|.|.+.-.. + +...+++++++++
T Consensus 114 ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~--G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~ 191 (321)
T PRK10415 114 LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC--GIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 (321)
T ss_pred HhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh--CCCEEEEecCccccccCCCcChHHHHHHHH
Confidence 4455556666666665544433321 122 22333344433 36777655432 1 1234788899987
Q ss_pred cCCCcEEEEecCCCHHHHHHHHh-cCCcEEEe
Q 006774 104 EMDLPVIMMSADGRVSAVMRGIR-HGACDYLI 134 (632)
Q Consensus 104 ~~~iPIIILSa~~d~e~~~eAl~-~GA~DYL~ 134 (632)
..++|||..-+-.+.+.+.++++ .|++....
T Consensus 192 ~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 192 KVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred hcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 77899998888888888899996 68887743
No 394
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.13 E-value=6e+02 Score=22.32 Aligned_cols=83 Identities=14% Similarity=0.004 Sum_probs=48.0
Q ss_pred EEEEEeCC--HHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCce-EEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006774 35 RVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFD-VVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 35 rVLIVDDd--~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pD-LVILDi~MPdmdGleLL~~Lr~~~~iPIII 111 (632)
+|+++... ......+...|...+..+....+............ .-| +|+++..-...+-.++++.++. ..+++|+
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iS~~g~~~~~~~~~~~a~~-~g~~iv~ 92 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLT-PGDVVIAISFSGETKETVEAAEIAKE-RGAKVIA 92 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCC-CCCEEEEEeCCCCCHHHHHHHHHHHH-cCCeEEE
Confidence 45555544 34455566667777877777777666554443222 224 4444443333345556666553 4689999
Q ss_pred EecCCCHH
Q 006774 112 MSADGRVS 119 (632)
Q Consensus 112 LSa~~d~e 119 (632)
+|+..+..
T Consensus 93 iT~~~~~~ 100 (139)
T cd05013 93 ITDSANSP 100 (139)
T ss_pred EcCCCCCh
Confidence 99876643
No 395
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=20.06 E-value=47 Score=37.98 Aligned_cols=41 Identities=7% Similarity=0.006 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhhh-hhhcCCCccccccccccccccCcCcc
Q 006774 267 HLQKFRLYLKRLNGV-SQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 267 HLqRvr~ylk~L~~~-A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
|-+++..++..|... ....++++.+-..+..|+.|||||+.
T Consensus 326 ha~~v~~~a~~Lf~~l~~~~~l~~~~~~LL~~Aa~LhdiG~~ 367 (496)
T PRK11031 326 QAQRVAKLADNFLQQVENEWHLEPRSRELLISACQLHEIGLS 367 (496)
T ss_pred HHHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHhcCCc
Confidence 555566665555322 22347888888899999999999997
No 396
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=20.04 E-value=9.8e+02 Score=24.77 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=36.1
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC----CCHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 006774 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD----GRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (632)
Q Consensus 80 pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~----~d~e~~~eAl~~GA~DYL~KP~--~~eeL~~~L~~vlr 151 (632)
.|++++.. + +..+++.+. ..+|+|+.... .......+.+..+-.+++..+- +.++|.+++..++.
T Consensus 253 ad~~v~~s---g--~~t~~Eam~--~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 253 ADLVISRA---G--ASTVAELAA--LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLS 323 (350)
T ss_pred cCEEEECC---C--HhHHHHHHH--hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence 46666521 1 344445442 46788875321 1122222333333457887764 89999988887764
Done!