Query 006774
Match_columns 632
No_of_seqs 597 out of 2507
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 08:36:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 2.3E-23 7.9E-28 193.0 16.6 122 29-152 8-133 (134)
2 3mm4_A Histidine kinase homolo 99.8 2.5E-20 8.7E-25 181.3 15.8 144 8-153 16-197 (206)
3 3r0j_A Possible two component 99.8 3.7E-19 1.3E-23 177.1 23.6 120 32-153 22-142 (250)
4 3f6p_A Transcriptional regulat 99.8 8.5E-20 2.9E-24 160.8 16.5 117 34-152 3-119 (120)
5 3gl9_A Response regulator; bet 99.8 1.1E-19 3.7E-24 160.9 16.9 116 34-151 3-121 (122)
6 3t6k_A Response regulator rece 99.8 2.4E-19 8.2E-24 161.5 17.9 119 33-153 4-125 (136)
7 2lpm_A Two-component response 99.8 9.5E-22 3.3E-26 179.9 0.4 114 32-151 7-121 (123)
8 2r25_B Osmosensing histidine p 99.8 4.5E-19 1.5E-23 159.2 16.5 120 33-152 2-127 (133)
9 3h1g_A Chemotaxis protein CHEY 99.8 9.8E-19 3.4E-23 155.5 16.5 119 32-151 4-126 (129)
10 3rqi_A Response regulator prot 99.8 4.2E-19 1.4E-23 168.8 13.9 121 32-154 6-127 (184)
11 3m6m_D Sensory/regulatory prot 99.8 1.5E-18 5E-23 158.0 16.5 120 31-152 12-136 (143)
12 2pl1_A Transcriptional regulat 99.8 4.2E-18 1.4E-22 148.3 18.3 118 34-153 1-119 (121)
13 1zgz_A Torcad operon transcrip 99.8 4.5E-18 1.6E-22 148.6 18.3 117 34-152 3-119 (122)
14 1a04_A Nitrate/nitrite respons 99.8 4.1E-18 1.4E-22 164.7 19.7 165 32-198 4-179 (215)
15 3gt7_A Sensor protein; structu 99.8 2.8E-18 9.7E-23 157.7 17.5 122 32-155 6-130 (154)
16 2a9o_A Response regulator; ess 99.8 3.8E-18 1.3E-22 148.0 17.0 117 34-152 2-118 (120)
17 2qzj_A Two-component response 99.8 3.1E-18 1.1E-22 154.2 16.8 119 33-153 4-122 (136)
18 1dbw_A Transcriptional regulat 99.8 4.8E-18 1.6E-22 149.9 17.6 118 33-152 3-121 (126)
19 1xhf_A DYE resistance, aerobic 99.8 5.3E-18 1.8E-22 148.4 17.7 118 33-152 3-120 (123)
20 3crn_A Response regulator rece 99.8 4.5E-18 1.5E-22 151.8 17.5 119 33-153 3-122 (132)
21 1kgs_A DRRD, DNA binding respo 99.8 8.4E-18 2.9E-22 163.1 20.8 120 33-154 2-122 (225)
22 1yio_A Response regulatory pro 99.8 8.2E-19 2.8E-23 168.5 13.0 163 33-198 4-167 (208)
23 3hv2_A Response regulator/HD d 99.8 5.3E-18 1.8E-22 155.1 17.8 122 31-154 12-135 (153)
24 3q9s_A DNA-binding response re 99.8 2.4E-18 8.3E-23 172.3 16.9 154 33-188 37-197 (249)
25 1srr_A SPO0F, sporulation resp 99.8 4.4E-18 1.5E-22 149.4 16.0 116 34-151 4-120 (124)
26 3jte_A Response regulator rece 99.8 8.4E-18 2.9E-22 151.2 18.2 123 33-155 3-126 (143)
27 3lua_A Response regulator rece 99.8 1.2E-18 4.1E-23 156.5 12.4 121 32-154 3-129 (140)
28 1zh2_A KDP operon transcriptio 99.8 5.9E-18 2E-22 147.0 16.3 118 34-153 2-119 (121)
29 1tmy_A CHEY protein, TMY; chem 99.8 6.5E-18 2.2E-22 147.2 16.2 116 33-150 2-119 (120)
30 1jbe_A Chemotaxis protein CHEY 99.8 9.8E-18 3.3E-22 147.7 17.4 119 32-152 3-125 (128)
31 1i3c_A Response regulator RCP1 99.8 9.3E-18 3.2E-22 153.1 17.8 122 32-153 7-138 (149)
32 3h5i_A Response regulator/sens 99.8 1.6E-18 5.5E-23 156.3 12.5 123 32-155 4-127 (140)
33 3kht_A Response regulator; PSI 99.8 6.5E-18 2.2E-22 152.4 16.4 122 32-155 4-131 (144)
34 3hdv_A Response regulator; PSI 99.8 1E-17 3.6E-22 149.3 17.5 121 32-153 6-128 (136)
35 3grc_A Sensor protein, kinase; 99.8 3.3E-18 1.1E-22 153.3 14.2 122 32-155 5-130 (140)
36 3heb_A Response regulator rece 99.8 1.3E-17 4.3E-22 152.2 18.0 122 32-153 3-136 (152)
37 3eod_A Protein HNR; response r 99.8 5.6E-18 1.9E-22 150.0 15.2 120 32-153 6-127 (130)
38 3hdg_A Uncharacterized protein 99.8 6E-18 2E-22 151.1 15.5 121 32-154 6-127 (137)
39 1k68_A Phytochrome response re 99.8 1.1E-17 3.7E-22 148.3 17.1 122 33-154 2-133 (140)
40 4e7p_A Response regulator; DNA 99.8 8.4E-18 2.9E-22 153.3 16.6 122 31-154 18-142 (150)
41 1p6q_A CHEY2; chemotaxis, sign 99.8 5.1E-18 1.8E-22 149.7 14.6 119 32-152 5-127 (129)
42 1mb3_A Cell division response 99.8 6.2E-18 2.1E-22 147.8 14.8 117 34-152 2-121 (124)
43 3kto_A Response regulator rece 99.8 2.7E-18 9.1E-23 154.1 12.7 121 32-154 5-128 (136)
44 3b2n_A Uncharacterized protein 99.8 1E-17 3.5E-22 149.7 16.4 119 33-153 3-124 (133)
45 3nhm_A Response regulator; pro 99.8 8.3E-18 2.8E-22 149.1 15.4 120 32-155 3-125 (133)
46 1dz3_A Stage 0 sporulation pro 99.8 1E-17 3.5E-22 148.6 15.6 119 33-153 2-124 (130)
47 3f6c_A Positive transcription 99.8 4.5E-18 1.5E-22 151.0 13.3 120 34-155 2-123 (134)
48 3hzh_A Chemotaxis response reg 99.8 8.2E-18 2.8E-22 155.1 15.4 120 32-151 35-156 (157)
49 2zay_A Response regulator rece 99.8 1.2E-17 3.9E-22 151.0 16.0 123 31-155 6-131 (147)
50 3ilh_A Two component response 99.8 1.7E-17 5.7E-22 148.8 16.9 121 32-152 8-139 (146)
51 3cnb_A DNA-binding response re 99.8 2.4E-17 8.1E-22 147.3 17.8 121 32-154 7-132 (143)
52 3cfy_A Putative LUXO repressor 99.8 1.2E-17 4E-22 150.6 15.7 118 34-153 5-123 (137)
53 3i42_A Response regulator rece 99.8 5.8E-18 2E-22 149.2 13.5 117 33-152 3-122 (127)
54 1k66_A Phytochrome response re 99.8 2E-17 6.7E-22 148.5 16.9 123 32-154 5-140 (149)
55 1mvo_A PHOP response regulator 99.8 1.9E-17 6.6E-22 147.3 16.4 119 33-153 3-122 (136)
56 3luf_A Two-component system re 99.8 1.5E-17 5.3E-22 168.0 17.1 123 32-155 123-248 (259)
57 4dad_A Putative pilus assembly 99.7 6.9E-18 2.3E-22 152.6 13.0 123 31-153 18-142 (146)
58 2gwr_A DNA-binding response re 99.7 1.3E-17 4.4E-22 164.5 15.6 154 33-188 5-168 (238)
59 3cg0_A Response regulator rece 99.7 3.2E-17 1.1E-21 146.3 16.7 121 32-154 8-130 (140)
60 3n0r_A Response regulator; sig 99.7 2.3E-18 7.7E-23 177.5 10.5 118 33-154 160-279 (286)
61 2oqr_A Sensory transduction pr 99.7 1.6E-17 5.6E-22 161.9 15.5 153 34-188 5-171 (230)
62 1s8n_A Putative antiterminator 99.7 1.7E-17 5.9E-22 159.5 15.4 120 32-153 12-132 (205)
63 3eul_A Possible nitrate/nitrit 99.7 4.3E-17 1.5E-21 148.6 17.2 122 31-154 13-137 (152)
64 3snk_A Response regulator CHEY 99.7 1.9E-18 6.6E-23 154.5 7.8 119 32-152 13-133 (135)
65 1ys7_A Transcriptional regulat 99.7 2.6E-17 8.9E-22 160.4 16.4 154 33-188 7-174 (233)
66 3kcn_A Adenylate cyclase homol 99.7 3.2E-17 1.1E-21 149.6 16.0 121 32-154 3-125 (151)
67 2ayx_A Sensor kinase protein R 99.7 3.5E-17 1.2E-21 164.5 17.8 120 32-153 128-248 (254)
68 2jba_A Phosphate regulon trans 99.7 5.2E-18 1.8E-22 148.9 10.1 118 34-153 3-123 (127)
69 3lte_A Response regulator; str 99.7 4.9E-17 1.7E-21 143.9 16.4 119 32-153 5-126 (132)
70 3n53_A Response regulator rece 99.7 1E-17 3.5E-22 150.4 12.1 120 33-155 3-125 (140)
71 3c3m_A Response regulator rece 99.7 3.5E-17 1.2E-21 147.2 15.6 117 34-152 4-123 (138)
72 2qxy_A Response regulator; reg 99.7 3E-17 1E-21 147.4 15.0 120 32-154 3-123 (142)
73 2rjn_A Response regulator rece 99.7 4.9E-17 1.7E-21 148.5 16.6 121 32-154 6-128 (154)
74 2qr3_A Two-component system re 99.7 5.8E-17 2E-21 144.6 16.3 119 33-153 3-127 (140)
75 3cg4_A Response regulator rece 99.7 1.4E-17 4.9E-22 149.2 12.4 122 32-155 6-130 (142)
76 3klo_A Transcriptional regulat 99.7 6.5E-18 2.2E-22 165.3 9.6 167 32-200 6-186 (225)
77 3c3w_A Two component transcrip 99.7 6.7E-18 2.3E-22 165.7 9.4 164 34-199 2-175 (225)
78 3dzd_A Transcriptional regulat 99.7 2.8E-17 9.6E-22 175.4 14.5 118 35-154 2-120 (368)
79 3a10_A Response regulator; pho 99.7 4.4E-17 1.5E-21 141.1 13.1 113 34-150 2-115 (116)
80 1dcf_A ETR1 protein; beta-alph 99.7 6.6E-17 2.3E-21 144.4 14.4 118 32-152 6-129 (136)
81 3cu5_A Two component transcrip 99.7 2.6E-17 9E-22 149.0 11.8 118 34-153 3-124 (141)
82 3cz5_A Two-component response 99.7 1.2E-16 4E-21 145.9 15.7 120 32-153 4-126 (153)
83 1qkk_A DCTD, C4-dicarboxylate 99.7 1E-16 3.4E-21 146.7 15.1 120 33-154 3-123 (155)
84 2jk1_A HUPR, hydrogenase trans 99.7 2.1E-16 7.1E-21 142.0 16.7 117 34-153 2-120 (139)
85 2qvg_A Two component response 99.7 1.8E-16 6E-21 142.2 16.0 120 32-151 6-134 (143)
86 1p2f_A Response regulator; DRR 99.7 1.3E-16 4.3E-21 154.8 16.0 151 33-188 2-160 (220)
87 2gkg_A Response regulator homo 99.7 1.3E-16 4.5E-21 139.0 14.1 115 34-151 6-124 (127)
88 3eq2_A Probable two-component 99.7 6.7E-17 2.3E-21 171.9 13.8 119 33-153 5-125 (394)
89 2qsj_A DNA-binding response re 99.7 1.3E-16 4.3E-21 145.5 12.5 121 33-155 3-127 (154)
90 1ny5_A Transcriptional regulat 99.7 2.4E-16 8.1E-21 169.1 16.5 118 34-153 1-119 (387)
91 2pln_A HP1043, response regula 99.7 5.1E-16 1.7E-20 138.8 16.0 117 31-153 16-134 (137)
92 1w25_A Stalked-cell differenti 99.7 2.9E-16 1E-20 169.5 17.2 118 34-153 2-122 (459)
93 2qv0_A Protein MRKE; structura 99.7 6.9E-16 2.4E-20 138.6 16.7 120 32-155 8-130 (143)
94 3kyj_B CHEY6 protein, putative 99.7 1.2E-16 4.1E-21 144.5 11.7 115 31-146 11-129 (145)
95 3c97_A Signal transduction his 99.7 2.4E-16 8.2E-21 141.7 12.4 116 33-153 10-131 (140)
96 2rdm_A Response regulator rece 99.7 8.9E-16 3E-20 135.5 15.8 119 32-153 4-124 (132)
97 3t8y_A CHEB, chemotaxis respon 99.7 6.3E-16 2.2E-20 143.9 15.5 118 32-151 24-154 (164)
98 2hqr_A Putative transcriptiona 99.7 3.6E-16 1.2E-20 151.9 14.4 149 34-188 1-158 (223)
99 2j48_A Two-component sensor ki 99.7 2.6E-16 8.9E-21 134.6 11.6 112 34-150 2-116 (119)
100 3eqz_A Response regulator; str 99.7 1.6E-16 5.6E-21 140.5 9.6 118 33-153 3-126 (135)
101 3bre_A Probable two-component 99.7 5.7E-16 1.9E-20 161.3 14.8 118 33-152 18-139 (358)
102 2b4a_A BH3024; flavodoxin-like 99.6 4.6E-16 1.6E-20 139.3 9.4 118 29-152 11-131 (138)
103 1qo0_D AMIR; binding protein, 99.6 6E-16 2E-20 147.7 10.1 115 32-153 11-126 (196)
104 3sy8_A ROCR; TIM barrel phosph 99.6 1.2E-15 4.2E-20 163.3 12.7 120 33-153 3-129 (400)
105 1irz_A ARR10-B; helix-turn-hel 99.6 5.8E-16 2E-20 125.8 7.4 62 217-278 2-63 (64)
106 1dc7_A NTRC, nitrogen regulati 99.6 2.3E-17 7.9E-22 143.6 -1.4 119 33-153 3-122 (124)
107 1a2o_A CHEB methylesterase; ba 99.6 2.8E-14 9.6E-19 151.4 16.0 118 33-152 3-133 (349)
108 3luf_A Two-component system re 99.5 1.4E-14 5E-19 146.2 9.1 102 34-139 5-107 (259)
109 2vyc_A Biodegradative arginine 99.5 3.4E-14 1.2E-18 164.7 9.9 120 34-154 1-135 (755)
110 3cwo_X Beta/alpha-barrel prote 98.8 3.3E-09 1.1E-13 102.8 6.5 93 58-152 6-101 (237)
111 1w25_A Stalked-cell differenti 98.8 9E-08 3.1E-12 103.1 17.8 117 33-153 152-271 (459)
112 3tm8_A BD1817, uncharacterized 98.0 3.1E-06 1.1E-10 88.9 4.5 71 259-332 162-236 (328)
113 3n75_A LDC, lysine decarboxyla 96.8 0.0017 5.9E-08 75.0 7.7 104 46-153 19-124 (715)
114 2ayx_A Sensor kinase protein R 96.8 0.0022 7.7E-08 63.7 7.5 97 31-151 9-105 (254)
115 3hc1_A Uncharacterized HDOD do 96.4 0.00048 1.6E-08 71.2 -0.4 70 258-332 113-197 (305)
116 3q7r_A Transcriptional regulat 95.8 0.045 1.6E-06 48.2 9.2 104 34-153 13-119 (121)
117 2ogi_A Hypothetical protein SA 95.2 0.0019 6.6E-08 62.6 -1.5 65 262-332 25-96 (196)
118 3cwo_X Beta/alpha-barrel prote 95.0 0.13 4.4E-06 49.0 10.6 82 65-147 131-221 (237)
119 2o08_A BH1327 protein; putativ 95.0 0.0019 6.6E-08 62.1 -2.3 61 262-328 17-83 (188)
120 3ccg_A HD superfamily hydrolas 94.6 0.0034 1.2E-07 60.5 -1.8 61 262-328 18-85 (190)
121 2yxb_A Coenzyme B12-dependent 94.3 0.91 3.1E-05 42.5 14.4 119 32-153 17-146 (161)
122 3q58_A N-acetylmannosamine-6-p 89.0 2.6 8.8E-05 41.7 11.2 99 33-135 101-210 (229)
123 3i7a_A Putative metal-dependen 88.4 0.25 8.6E-06 50.0 3.3 95 233-332 79-193 (281)
124 3igs_A N-acetylmannosamine-6-p 86.7 5.5 0.00019 39.4 11.9 85 47-135 119-210 (232)
125 3fkq_A NTRC-like two-domain pr 85.5 7.8 0.00027 40.5 13.1 104 32-150 20-126 (373)
126 1ccw_A Protein (glutamate muta 84.4 23 0.00077 31.9 14.4 106 40-148 14-132 (137)
127 1wv2_A Thiazole moeity, thiazo 84.2 8.4 0.00029 39.2 11.9 103 44-151 123-237 (265)
128 1vqr_A Hypothetical protein CJ 79.4 0.18 6.2E-06 51.4 -2.4 63 260-327 121-197 (297)
129 2i2x_B MTAC, methyltransferase 79.3 22 0.00077 35.4 13.1 111 32-150 122-242 (258)
130 2l69_A Rossmann 2X3 fold prote 78.7 19 0.00066 31.2 10.4 116 34-153 3-124 (134)
131 1xi3_A Thiamine phosphate pyro 74.8 21 0.00073 33.5 11.0 70 61-134 113-189 (215)
132 1yad_A Regulatory protein TENI 74.2 21 0.00072 34.1 10.9 70 61-134 115-191 (221)
133 1y80_A Predicted cobalamin bin 74.1 16 0.00056 34.8 10.0 97 33-134 88-196 (210)
134 3ljx_A MMOQ response regulator 73.5 1.1 3.9E-05 45.5 1.6 62 260-326 105-177 (288)
135 3o63_A Probable thiamine-phosp 72.0 26 0.00088 34.9 11.1 70 61-134 140-218 (243)
136 3m1t_A Putative phosphohydrola 70.6 1.3 4.3E-05 44.8 1.2 46 258-309 100-145 (275)
137 1r8j_A KAIA; circadian clock p 70.0 32 0.0011 35.1 11.2 122 30-153 6-130 (289)
138 3ezx_A MMCP 1, monomethylamine 69.3 16 0.00056 35.5 8.8 97 33-134 92-202 (215)
139 2htm_A Thiazole biosynthesis p 68.7 11 0.00039 38.3 7.7 106 41-151 109-228 (268)
140 4fo4_A Inosine 5'-monophosphat 68.7 40 0.0014 35.6 12.3 100 32-135 119-240 (366)
141 3kp1_A D-ornithine aminomutase 67.6 23 0.0008 40.4 10.5 116 33-153 602-736 (763)
142 3ffs_A Inosine-5-monophosphate 66.9 34 0.0012 36.7 11.4 100 33-135 156-275 (400)
143 3qja_A IGPS, indole-3-glycerol 66.8 63 0.0022 32.6 12.9 86 46-135 151-242 (272)
144 1geq_A Tryptophan synthase alp 66.0 15 0.0005 35.8 7.8 54 94-147 68-127 (248)
145 2q5c_A NTRC family transcripti 65.9 56 0.0019 31.1 11.8 55 31-85 2-57 (196)
146 1xrs_B D-lysine 5,6-aminomutas 64.9 71 0.0024 32.3 12.7 114 33-151 120-257 (262)
147 2ekc_A AQ_1548, tryptophan syn 63.9 19 0.00066 35.9 8.4 71 79-149 44-143 (262)
148 1req_A Methylmalonyl-COA mutas 63.1 36 0.0012 39.3 11.3 117 33-152 596-723 (727)
149 2xij_A Methylmalonyl-COA mutas 63.0 66 0.0022 37.4 13.4 118 33-153 604-732 (762)
150 3f4w_A Putative hexulose 6 pho 62.4 63 0.0021 30.3 11.4 99 33-134 77-186 (211)
151 1xm3_A Thiazole biosynthesis p 62.1 37 0.0013 33.9 10.1 88 44-135 114-207 (264)
152 2tps_A Protein (thiamin phosph 61.9 44 0.0015 31.7 10.2 69 62-134 122-199 (227)
153 1qop_A Tryptophan synthase alp 61.7 19 0.00065 36.0 7.8 71 79-149 44-143 (268)
154 2pq7_A Predicted HD superfamil 60.1 2.5 8.6E-05 41.0 1.0 39 262-306 32-70 (220)
155 3khj_A Inosine-5-monophosphate 60.1 44 0.0015 35.2 10.6 100 33-135 117-236 (361)
156 3qz6_A HPCH/HPAI aldolase; str 59.5 65 0.0022 32.2 11.3 99 49-149 6-110 (261)
157 2pjq_A Uncharacterized protein 58.0 1.9 6.5E-05 42.5 -0.3 39 263-307 30-68 (231)
158 2hek_A Hypothetical protein; p 58.0 3.6 0.00012 43.7 1.8 39 265-308 52-90 (371)
159 2v5j_A 2,4-dihydroxyhept-2-ENE 57.7 99 0.0034 31.4 12.5 98 49-148 30-132 (287)
160 3duw_A OMT, O-methyltransferas 56.5 51 0.0017 30.8 9.5 95 4-101 50-153 (223)
161 3b57_A LIN1889 protein; Q92AN1 55.9 3.7 0.00013 39.7 1.3 40 263-308 25-64 (209)
162 3gw7_A Uncharacterized protein 55.1 4.1 0.00014 40.7 1.6 38 264-307 26-63 (239)
163 3dto_A BH2835 protein; all alp 55.1 3.7 0.00013 40.5 1.2 39 263-307 25-63 (223)
164 4dzz_A Plasmid partitioning pr 54.1 25 0.00086 32.3 6.8 53 32-87 29-83 (206)
165 2vws_A YFAU, 2-keto-3-deoxy su 53.9 1.3E+02 0.0046 29.8 12.6 98 49-148 9-111 (267)
166 2gjl_A Hypothetical protein PA 52.7 1.1E+02 0.0038 31.0 12.1 80 53-135 114-201 (328)
167 2lci_A Protein OR36; structura 52.6 35 0.0012 29.5 6.7 39 37-75 81-119 (134)
168 3usb_A Inosine-5'-monophosphat 52.1 1.1E+02 0.0037 33.6 12.5 101 32-135 267-388 (511)
169 2d00_A V-type ATP synthase sub 51.9 1.1E+02 0.0038 26.6 10.2 76 33-114 3-80 (109)
170 2gek_A Phosphatidylinositol ma 51.0 65 0.0022 32.3 9.9 107 33-151 240-348 (406)
171 4adt_A Pyridoxine biosynthetic 49.7 98 0.0034 31.7 10.9 58 95-152 196-260 (297)
172 3r2g_A Inosine 5'-monophosphat 48.9 2.2E+02 0.0077 29.9 13.8 99 32-135 111-228 (361)
173 3djb_A Hydrolase, HD family; a 48.6 4.2 0.00014 40.1 0.4 39 263-307 25-63 (223)
174 1sui_A Caffeoyl-COA O-methyltr 48.6 1.1E+02 0.0036 29.8 10.7 94 5-101 72-176 (247)
175 4e38_A Keto-hydroxyglutarate-a 47.7 53 0.0018 32.6 8.3 90 51-144 29-121 (232)
176 3bo9_A Putative nitroalkan dio 47.5 1.1E+02 0.0038 31.3 11.1 80 53-135 120-205 (326)
177 1ka9_F Imidazole glycerol phos 47.5 1.2E+02 0.0042 29.0 10.9 77 67-145 155-241 (252)
178 2w6r_A Imidazole glycerol phos 46.4 86 0.0029 30.5 9.7 69 66-136 158-230 (266)
179 2v82_A 2-dehydro-3-deoxy-6-pho 46.3 86 0.0029 29.5 9.4 93 51-150 95-197 (212)
180 2c6q_A GMP reductase 2; TIM ba 46.1 1.5E+02 0.0051 30.8 11.9 101 33-137 132-255 (351)
181 3c3y_A Pfomt, O-methyltransfer 45.5 62 0.0021 31.1 8.3 67 33-101 95-167 (237)
182 1y0e_A Putative N-acetylmannos 45.4 88 0.003 29.6 9.3 87 46-135 107-204 (223)
183 3vnd_A TSA, tryptophan synthas 45.1 18 0.0006 36.7 4.4 55 95-149 83-144 (267)
184 1ujp_A Tryptophan synthase alp 45.1 31 0.0011 34.8 6.2 55 95-149 80-140 (271)
185 3nav_A Tryptophan synthase alp 45.1 23 0.0008 35.9 5.3 55 94-148 84-145 (271)
186 2bfw_A GLGA glycogen synthase; 45.1 1.7E+02 0.0058 26.1 12.0 106 33-151 70-179 (200)
187 1jcn_A Inosine monophosphate d 44.9 1.5E+02 0.0051 32.2 12.2 99 33-134 267-386 (514)
188 4avf_A Inosine-5'-monophosphat 44.9 1.4E+02 0.0049 32.4 12.0 100 33-135 241-361 (490)
189 2paq_A 5'-deoxynucleotidase YF 44.6 7.1 0.00024 37.9 1.3 46 258-309 26-77 (201)
190 3tfw_A Putative O-methyltransf 44.5 90 0.0031 30.1 9.4 94 4-101 55-156 (248)
191 3fwz_A Inner membrane protein 44.4 93 0.0032 27.2 8.7 92 33-134 30-124 (140)
192 3cbg_A O-methyltransferase; cy 44.2 77 0.0026 30.2 8.7 69 31-101 95-168 (232)
193 3tr6_A O-methyltransferase; ce 43.8 93 0.0032 28.9 9.1 95 4-101 56-160 (225)
194 3bw2_A 2-nitropropane dioxygen 43.6 1.7E+02 0.0058 30.3 11.9 76 56-134 144-236 (369)
195 3rht_A (gatase1)-like protein; 43.0 10 0.00034 38.4 2.2 49 34-86 5-57 (259)
196 1tqj_A Ribulose-phosphate 3-ep 43.0 49 0.0017 32.3 7.1 82 65-149 18-108 (230)
197 1geq_A Tryptophan synthase alp 43.0 1.4E+02 0.0048 28.7 10.5 84 48-135 124-220 (248)
198 1eep_A Inosine 5'-monophosphat 42.4 1.1E+02 0.0038 32.2 10.4 88 44-134 180-284 (404)
199 1h5y_A HISF; histidine biosynt 42.4 1.4E+02 0.0049 28.1 10.4 68 65-134 155-226 (253)
200 2avd_A Catechol-O-methyltransf 42.1 1.1E+02 0.0037 28.5 9.3 69 31-101 92-165 (229)
201 2f9f_A First mannosyl transfer 40.8 2E+02 0.0067 25.6 11.1 107 33-152 50-162 (177)
202 1dxe_A 2-dehydro-3-deoxy-galac 40.7 2.1E+02 0.0073 28.1 11.6 98 49-148 10-112 (256)
203 1ep3_A Dihydroorotate dehydrog 40.6 93 0.0032 31.0 9.0 39 95-133 230-268 (311)
204 2oo3_A Protein involved in cat 39.4 21 0.00072 36.6 3.9 69 33-101 113-182 (283)
205 2w6r_A Imidazole glycerol phos 39.2 1.1E+02 0.0037 29.8 9.1 70 65-136 31-104 (266)
206 1rd5_A Tryptophan synthase alp 38.8 43 0.0015 33.0 6.1 54 94-148 82-138 (262)
207 3fro_A GLGA glycogen synthase; 38.0 2.5E+02 0.0086 28.1 12.0 106 33-151 285-394 (439)
208 2z6i_A Trans-2-enoyl-ACP reduc 37.6 1.5E+02 0.0051 30.3 10.1 77 55-134 108-190 (332)
209 1h5y_A HISF; histidine biosynt 37.6 1.5E+02 0.0052 27.9 9.7 69 64-134 33-105 (253)
210 3paj_A Nicotinate-nucleotide p 36.9 2.7E+02 0.0093 28.9 11.9 92 35-133 204-301 (320)
211 3kts_A Glycerol uptake operon 36.8 50 0.0017 31.9 5.9 62 67-134 117-178 (192)
212 3gnn_A Nicotinate-nucleotide p 36.7 1.1E+02 0.0038 31.5 8.8 66 60-132 213-278 (298)
213 1thf_D HISF protein; thermophI 36.7 1.4E+02 0.0046 28.8 9.3 68 66-135 153-224 (253)
214 1ka9_F Imidazole glycerol phos 36.4 1.6E+02 0.0054 28.3 9.7 69 65-135 32-104 (252)
215 4fxs_A Inosine-5'-monophosphat 35.8 2.4E+02 0.0084 30.6 12.0 100 33-135 243-363 (496)
216 3l0g_A Nicotinate-nucleotide p 35.8 91 0.0031 32.2 8.0 90 36-132 181-276 (300)
217 3beo_A UDP-N-acetylglucosamine 35.3 3.2E+02 0.011 26.9 12.1 59 80-151 283-341 (375)
218 1rzu_A Glycogen synthase 1; gl 35.2 2.1E+02 0.0073 29.6 11.2 107 33-150 320-438 (485)
219 1vzw_A Phosphoribosyl isomeras 35.2 1.8E+02 0.0063 27.8 9.9 68 65-134 147-221 (244)
220 1izc_A Macrophomate synthase i 35.1 2.5E+02 0.0084 29.2 11.4 81 66-148 52-138 (339)
221 3ceu_A Thiamine phosphate pyro 35.0 51 0.0018 31.4 5.8 69 61-134 93-171 (210)
222 3bul_A Methionine synthase; tr 34.4 1.5E+02 0.0051 33.3 10.1 113 33-150 98-223 (579)
223 3c48_A Predicted glycosyltrans 34.3 2.2E+02 0.0074 28.9 10.8 108 33-151 276-390 (438)
224 3okp_A GDP-mannose-dependent a 33.7 1.1E+02 0.0037 30.5 8.2 107 33-151 229-343 (394)
225 2qzs_A Glycogen synthase; glyc 33.1 1.9E+02 0.0063 30.1 10.3 108 33-151 321-440 (485)
226 1qv9_A F420-dependent methylen 33.0 66 0.0023 32.4 6.1 61 74-137 61-121 (283)
227 3ovp_A Ribulose-phosphate 3-ep 32.7 82 0.0028 30.8 6.9 55 80-135 135-197 (228)
228 4had_A Probable oxidoreductase 31.9 3.4E+02 0.011 27.2 11.7 107 32-151 22-135 (350)
229 3u81_A Catechol O-methyltransf 31.6 70 0.0024 30.0 6.1 59 32-90 82-145 (221)
230 2qgs_A Protein Se1688; alpha-h 31.6 18 0.00062 35.2 1.9 41 262-307 24-64 (225)
231 1yxy_A Putative N-acetylmannos 31.4 1.6E+02 0.0056 27.9 8.8 85 46-135 121-215 (234)
232 3rf0_A Exopolyphosphatase; str 31.3 14 0.00047 35.8 0.9 63 266-328 22-98 (209)
233 3f4w_A Putative hexulose 6 pho 30.8 56 0.0019 30.7 5.2 82 65-148 11-98 (211)
234 1thf_D HISF protein; thermophI 30.4 2.4E+02 0.0084 26.9 9.9 69 65-135 31-103 (253)
235 3tdn_A FLR symmetric alpha-bet 30.3 1.4E+02 0.0046 28.9 8.1 69 65-135 36-108 (247)
236 2y88_A Phosphoribosyl isomeras 30.2 3.1E+02 0.011 26.0 10.6 67 66-134 151-224 (244)
237 3tqv_A Nicotinate-nucleotide p 30.0 1.8E+02 0.006 29.8 9.0 66 60-132 202-267 (287)
238 3o07_A Pyridoxine biosynthesis 29.6 42 0.0014 34.5 4.2 60 94-153 186-252 (291)
239 3ajx_A 3-hexulose-6-phosphate 29.6 44 0.0015 31.3 4.2 81 65-147 11-97 (207)
240 2iw1_A Lipopolysaccharide core 29.2 2.1E+02 0.0072 28.1 9.4 105 34-151 229-336 (374)
241 3lab_A Putative KDPG (2-keto-3 29.0 1.3E+02 0.0043 29.7 7.4 61 80-143 39-99 (217)
242 2hnk_A SAM-dependent O-methylt 28.9 1.6E+02 0.0053 27.9 8.1 67 33-101 85-167 (239)
243 1v4v_A UDP-N-acetylglucosamine 28.8 4.2E+02 0.014 26.2 11.7 59 80-151 275-333 (376)
244 1qdl_B Protein (anthranilate s 28.8 35 0.0012 32.1 3.3 76 34-113 1-84 (195)
245 1vgv_A UDP-N-acetylglucosamine 28.7 2.8E+02 0.0096 27.5 10.4 42 105-151 300-341 (384)
246 4e5v_A Putative THUA-like prot 28.4 72 0.0025 32.3 5.8 76 32-112 3-92 (281)
247 1qpo_A Quinolinate acid phosph 28.0 1.5E+02 0.005 30.2 8.0 93 36-133 168-267 (284)
248 1h1y_A D-ribulose-5-phosphate 27.6 69 0.0023 30.9 5.3 55 80-135 139-201 (228)
249 2xxa_A Signal recognition part 27.5 1.1E+02 0.0038 32.7 7.4 53 33-87 129-191 (433)
250 3iwp_A Copper homeostasis prot 27.4 2.5E+02 0.0086 28.7 9.6 84 61-147 44-149 (287)
251 3dm5_A SRP54, signal recogniti 27.3 70 0.0024 34.7 5.7 55 32-88 127-191 (443)
252 2xci_A KDO-transferase, 3-deox 27.2 1.1E+02 0.0039 31.3 7.2 67 80-151 278-345 (374)
253 2hzd_A Transcriptional enhance 26.8 1E+02 0.0034 26.0 5.3 55 222-276 6-76 (82)
254 3l4e_A Uncharacterized peptida 26.7 2.4E+02 0.0082 26.9 9.0 62 33-102 27-98 (206)
255 1rd5_A Tryptophan synthase alp 26.6 1.1E+02 0.0039 29.8 6.8 42 94-135 189-230 (262)
256 2fli_A Ribulose-phosphate 3-ep 26.5 72 0.0025 30.0 5.2 55 79-134 131-197 (220)
257 1mu5_A Type II DNA topoisomera 26.4 11 0.00039 41.1 -0.7 100 1-102 113-244 (471)
258 3ffs_A Inosine-5-monophosphate 26.4 1.4E+02 0.0049 31.8 7.9 65 67-134 146-211 (400)
259 1qop_A Tryptophan synthase alp 26.4 2.4E+02 0.0083 27.8 9.3 41 95-135 194-234 (268)
260 2fhp_A Methylase, putative; al 26.2 3.3E+02 0.011 23.9 9.4 68 34-101 68-138 (187)
261 2f6u_A GGGPS, (S)-3-O-geranylg 25.9 65 0.0022 31.9 4.8 58 67-134 23-83 (234)
262 3u3x_A Oxidoreductase; structu 25.8 3.8E+02 0.013 27.3 11.0 105 32-149 25-135 (361)
263 3mem_A Putative signal transdu 25.8 17 0.00057 39.4 0.5 45 262-309 277-322 (457)
264 2yxd_A Probable cobalt-precorr 25.7 3.3E+02 0.011 23.6 9.9 74 32-113 56-131 (183)
265 1j8m_F SRP54, signal recogniti 25.7 27 0.00091 35.6 2.0 54 32-87 125-188 (297)
266 2q14_A Phosphohydrolase; BT420 25.5 16 0.00054 39.4 0.3 41 266-309 58-103 (410)
267 2l2q_A PTS system, cellobiose- 25.4 69 0.0024 27.5 4.3 78 31-114 2-84 (109)
268 3axs_A Probable N(2),N(2)-dime 25.2 2.2E+02 0.0076 30.1 9.1 113 34-151 78-200 (392)
269 4gqa_A NAD binding oxidoreduct 25.2 5.2E+02 0.018 26.5 12.0 110 29-151 22-145 (412)
270 3vk5_A MOEO5; TIM barrel, tran 25.0 1.2E+02 0.0041 31.1 6.6 56 80-136 200-257 (286)
271 3q2i_A Dehydrogenase; rossmann 24.9 5E+02 0.017 26.0 11.6 106 32-151 12-124 (354)
272 2r60_A Glycosyl transferase, g 24.4 4E+02 0.014 27.7 11.0 111 34-151 295-423 (499)
273 2cqz_A 177AA long hypothetical 24.4 23 0.00078 33.4 1.1 44 260-309 29-77 (177)
274 3w01_A Heptaprenylglyceryl pho 24.3 58 0.002 32.5 4.0 51 79-136 36-88 (235)
275 3tsm_A IGPS, indole-3-glycerol 24.3 4.1E+02 0.014 26.6 10.5 86 46-135 158-249 (272)
276 1tqx_A D-ribulose-5-phosphate 24.1 2E+02 0.0068 28.1 7.9 83 52-136 109-202 (227)
277 3inp_A D-ribulose-phosphate 3- 24.0 1.3E+02 0.0043 30.0 6.5 83 65-149 41-130 (246)
278 3dr5_A Putative O-methyltransf 24.0 97 0.0033 29.5 5.6 67 31-101 79-149 (221)
279 1qo2_A Molecule: N-((5-phospho 23.9 1.8E+02 0.0063 27.8 7.6 77 65-144 145-238 (241)
280 3tha_A Tryptophan synthase alp 23.5 58 0.002 32.7 3.9 56 94-152 78-139 (252)
281 3euw_A MYO-inositol dehydrogen 23.2 5.7E+02 0.019 25.5 13.0 104 33-149 4-112 (344)
282 2qfm_A Spermine synthase; sper 23.1 3.9E+02 0.013 28.1 10.4 56 34-89 212-277 (364)
283 2p10_A MLL9387 protein; putati 23.1 6.2E+02 0.021 25.9 12.1 76 58-136 165-260 (286)
284 3ntv_A MW1564 protein; rossman 23.1 1.9E+02 0.0063 27.4 7.4 65 33-102 95-163 (232)
285 3qhp_A Type 1 capsular polysac 22.8 3.3E+02 0.011 23.4 8.5 106 33-151 32-139 (166)
286 1zh8_A Oxidoreductase; TM0312, 22.6 5.9E+02 0.02 25.5 12.3 106 32-150 17-130 (340)
287 1viz_A PCRB protein homolog; s 22.6 85 0.0029 31.2 4.9 59 67-134 23-83 (240)
288 1x1o_A Nicotinate-nucleotide p 22.6 3.3E+02 0.011 27.6 9.4 93 35-134 168-267 (286)
289 3ec7_A Putative dehydrogenase; 22.6 5.1E+02 0.018 26.2 11.2 107 33-151 23-136 (357)
290 3l9w_A Glutathione-regulated p 22.4 1.4E+02 0.0046 31.8 6.8 95 32-135 26-122 (413)
291 3rc1_A Sugar 3-ketoreductase; 22.4 6.1E+02 0.021 25.5 13.9 106 32-151 26-138 (350)
292 3cea_A MYO-inositol 2-dehydrog 22.3 5.8E+02 0.02 25.3 11.5 106 32-149 7-118 (346)
293 1p0k_A Isopentenyl-diphosphate 21.9 6.3E+02 0.022 25.6 12.3 88 45-135 166-280 (349)
294 1gox_A (S)-2-hydroxy-acid oxid 21.8 3.4E+02 0.011 28.2 9.6 86 47-135 215-309 (370)
295 1vrd_A Inosine-5'-monophosphat 21.2 3.1E+02 0.01 29.5 9.5 99 33-134 249-368 (494)
296 3db2_A Putative NADPH-dependen 20.8 5.2E+02 0.018 25.9 10.7 105 32-151 4-115 (354)
297 1rpx_A Protein (ribulose-phosp 20.7 99 0.0034 29.5 4.9 56 79-135 140-207 (230)
298 2gjl_A Hypothetical protein PA 20.4 6.6E+02 0.022 25.2 11.5 62 65-135 84-145 (328)
299 3r3h_A O-methyltransferase, SA 20.3 57 0.0019 31.6 3.1 68 32-101 84-156 (242)
300 2kpo_A Rossmann 2X2 fold prote 20.2 3.8E+02 0.013 22.4 10.6 92 34-149 3-96 (110)
301 3e18_A Oxidoreductase; dehydro 20.2 4.8E+02 0.016 26.5 10.3 104 33-151 5-114 (359)
302 2jjm_A Glycosyl transferase, g 20.1 2E+02 0.0067 28.9 7.3 65 80-151 285-349 (394)
303 3mz0_A Inositol 2-dehydrogenas 20.1 6.6E+02 0.022 25.0 12.7 47 105-151 65-115 (344)
304 2dqb_A Deoxyguanosinetriphosph 20.0 35 0.0012 36.3 1.6 38 266-309 78-115 (376)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.90 E-value=2.3e-23 Score=193.00 Aligned_cols=122 Identities=29% Similarity=0.567 Sum_probs=111.6
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCe-EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---
Q 006774 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--- 104 (632)
Q Consensus 29 ~~p~glrVLIVDDd~~ir~~L~~lL~~~gy~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~--- 104 (632)
.+.+++|||||||++..+..++.+|+..||. |.+|.++.+|++.+++.. ||+||+|++||+|||++++++||..
T Consensus 8 ~m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~--~DlillD~~MP~mdG~el~~~ir~~~~~ 85 (134)
T 3to5_A 8 ILNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD--FDFVVTDWNMPGMQGIDLLKNIRADEEL 85 (134)
T ss_dssp -CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTT
T ss_pred HhCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCC
Confidence 3456789999999999999999999999986 678999999999998875 9999999999999999999999843
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 105 ~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
+++|||++|+..+.+...+++++||+|||.||++.++|..++++++++
T Consensus 86 ~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 86 KHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp TTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999999999999988754
No 2
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.84 E-value=2.5e-20 Score=181.33 Aligned_cols=144 Identities=27% Similarity=0.416 Sum_probs=107.2
Q ss_pred HHHcCC-------CCCCCcccccccCCCC-------------CCCCcEEEEEeCCHHHHHHHHHHHHhCCC-eEEEEcCH
Q 006774 8 VQSSGG-------SGYGSSRAADVAVPDQ-------------FPAGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQA 66 (632)
Q Consensus 8 v~~~GG-------~G~gs~~~~~~~~p~~-------------~p~glrVLIVDDd~~ir~~L~~lL~~~gy-~V~~a~sg 66 (632)
..+||| .|.|++|++.+++... ...+++||||||++..+..++.+|+..+| .|..+.++
T Consensus 16 ~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~ 95 (206)
T 3mm4_A 16 RGSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSG 95 (206)
T ss_dssp ---------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSH
T ss_pred ccccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCH
Confidence 357888 5889999888775311 12467999999999999999999999998 89999999
Q ss_pred HHHHHHHHHc-----------CCCceEEEEecCCCCCCHHHHHHHHhc-----cCCCcEEEEecCC-CHHHHHHHHhcCC
Q 006774 67 AVALDILRER-----------KGCFDVVLSDVHMPDMDGFKLLEHIGL-----EMDLPVIMMSADG-RVSAVMRGIRHGA 129 (632)
Q Consensus 67 ~eALe~L~e~-----------~~~pDLVILDi~MPdmdGleLL~~Lr~-----~~~iPIIILSa~~-d~e~~~eAl~~GA 129 (632)
.+|++.+.+. ...||+||+|+.||+++|++++++|+. .+.+|||++|+.. +.+...++++.|+
T Consensus 96 ~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga 175 (206)
T 3mm4_A 96 KEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGM 175 (206)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTC
T ss_pred HHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCC
Confidence 9999999874 124999999999999999999999975 3789999999998 7788889999999
Q ss_pred cEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 130 CDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 130 ~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
++||.||++ +|..+|+++++++
T Consensus 176 ~~~l~KP~~--~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 176 DAFLDKSLN--QLANVIREIESKR 197 (206)
T ss_dssp SEEEETTCT--THHHHHHHHC---
T ss_pred CEEEcCcHH--HHHHHHHHHHhhh
Confidence 999999998 8999998887654
No 3
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.83 E-value=3.7e-19 Score=177.09 Aligned_cols=120 Identities=33% Similarity=0.531 Sum_probs=112.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
..++||||||++..+..++.+|+..+|+|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 99 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETR--PDAVILDVXMPGMDGFGVLRRLRADGIDAPAL 99 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 3589999999999999999999999999999999999999998765 999999999999999999999975 4689999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
++|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 100 ~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 100 FLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp EEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998764
No 4
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.83 E-value=8.5e-20 Score=160.76 Aligned_cols=117 Identities=30% Similarity=0.491 Sum_probs=110.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILS 113 (632)
.+||||||++..+..++..|+..+|.+..+.++.+|++.+.+.. ||+||+|+.||+++|++++++++....+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQ--PDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTC--CSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999999999999999999999998654 9999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
+..+.....++++.||++||.||++.++|..++++++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 81 AKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp ESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988753
No 5
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.83 E-value=1.1e-19 Score=160.86 Aligned_cols=116 Identities=27% Similarity=0.432 Sum_probs=108.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~---~~iPII 110 (632)
.+||||||++..+..++.+|+..+|+|..+.++.+|++.+++.. ||+||+|+.||+++|++++++++.. +.+|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~--~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFT--PDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBC--CSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 58999999999999999999999999999999999999997654 9999999999999999999999753 579999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
++|+..+.+...++++.||++|+.||++.++|..+++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988764
No 6
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.82 E-value=2.4e-19 Score=161.54 Aligned_cols=119 Identities=32% Similarity=0.542 Sum_probs=110.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCcE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~~iPI 109 (632)
..+||||||++..+..++.+|+..+|.|..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+. .+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNL--PDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 468999999999999999999999999999999999999998765 999999999999999999999975 357999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|++|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999998754
No 7
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.82 E-value=9.5e-22 Score=179.89 Aligned_cols=114 Identities=26% Similarity=0.406 Sum_probs=101.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPII 110 (632)
+.+|||||||++.++..++.+|+..||+|. +|.++++|++.+++.. ||+||+|++||++||++++++|+. .++|||
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~--~DlvllDi~mP~~~G~el~~~lr~-~~ipvI 83 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQ--FDIAIIDVNLDGEPSYPVADILAE-RNVPFI 83 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCC--SSEEEECSSSSSCCSHHHHHHHHH-TCCSSC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHc-CCCCEE
Confidence 468999999999999999999999999985 7999999999998865 999999999999999999999985 579999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
++|++.+... +.++|+++||.||++.++|..+++++++
T Consensus 84 ~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 84 FATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp CBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred EEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 9999887643 3468999999999999999988876543
No 8
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.81 E-value=4.5e-19 Score=159.16 Aligned_cols=120 Identities=23% Similarity=0.402 Sum_probs=107.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-eEEEEcCHHHHHHHHHHc---CCCceEEEEecCCCCCCHHHHHHHHhc--cCC
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRER---KGCFDVVLSDVHMPDMDGFKLLEHIGL--EMD 106 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy-~V~~a~sg~eALe~L~e~---~~~pDLVILDi~MPdmdGleLL~~Lr~--~~~ 106 (632)
.++||||||++..+..++.+|+..++ .+..+.++.+|++.++.. ...||+||+|+.||+++|++++++|+. .+.
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 81 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 81 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCC
Confidence 46899999999999999999998887 488999999999998761 124999999999999999999999974 357
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
+|||++|+..+.+...++++.||++||.||++.++|..++++++..
T Consensus 82 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999887643
No 9
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.80 E-value=9.8e-19 Score=155.53 Aligned_cols=119 Identities=29% Similarity=0.551 Sum_probs=108.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCe-EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDL 107 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~---~~i 107 (632)
..+|||||||++..+..++.+|+..+|. +..+.++.+|++.+.... .||+||+|+.||+++|++++++|+.. +.+
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~ 82 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANA-DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEI 82 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCT-TCCEEEECSCCSSSCHHHHHHHHHTSTTCTTC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCC
Confidence 3579999999999999999999999985 889999999999887642 59999999999999999999999753 579
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
|||++|+..+.....++++.||++||.||++.++|..+++.+++
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 83 PIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred eEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998875
No 10
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.80 E-value=4.2e-19 Score=168.78 Aligned_cols=121 Identities=21% Similarity=0.343 Sum_probs=111.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii 83 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLSLIAPLCDLQPDARIL 83 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSC--CSEEEECSEETTEESHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeccCCCccHHHHHHHHHhcCCCCCEE
Confidence 3579999999999999999999999999999999999999997654 999999999999999999999974 5789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
++|+..+.+...++++.||++||.||++.++|..+++.+++...
T Consensus 84 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 84 VLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred EEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988876543
No 11
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.79 E-value=1.5e-18 Score=157.96 Aligned_cols=120 Identities=28% Similarity=0.450 Sum_probs=105.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-----cC
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-----EM 105 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-----~~ 105 (632)
...++||||||++..+..++.+|+..+|.+..+.++++|++.+.... ||+||+|+.||+++|++++++|+. .+
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEED--YDAVIVDLHMPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhccCC
Confidence 35689999999999999999999999999999999999999998764 999999999999999999999973 24
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 106 ~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
.+|||++|+..+.+...++++.||++||.||++.++|..++..+...
T Consensus 90 ~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 90 YTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999887643
No 12
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.79 E-value=4.2e-18 Score=148.32 Aligned_cols=118 Identities=27% Similarity=0.407 Sum_probs=109.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIIL 112 (632)
++||||||++..+..++..|...+|.+..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999999998764 999999999999999999999974 468999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|+..+.....++++.|+++|+.||++.++|...+++++++.
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999887653
No 13
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.79 E-value=4.5e-18 Score=148.60 Aligned_cols=117 Identities=21% Similarity=0.385 Sum_probs=109.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILS 113 (632)
.+||||||++..+..++.+|+..+|.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s 80 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS--VDLILLDINLPDENGLMLTRALRERSTVGIILVT 80 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999998999999999999999988754 9999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
+..+.....++++.|+++|+.||++.++|...+++++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 81 GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 999999899999999999999999999999999988765
No 14
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.79 E-value=4.1e-18 Score=164.73 Aligned_cols=165 Identities=18% Similarity=0.291 Sum_probs=132.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~-gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iP 108 (632)
..++||||||++..+..++.+|+.. ++.+ ..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ 81 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGR 81 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEEETTSTTSCHHHHHHHHHHSCCCSE
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 3579999999999999999999986 4887 68999999999998765 999999999999999999999975 46899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcccccccc-------ccCC-ccccccCCCChhhHH
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE-------NSGS-LEETDHHKRGSDEIE 180 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~~-------~~~~-le~~~~~~lt~~Eie 180 (632)
||++|+..+.+...++++.||++||.||++.++|..+++.++++......... .... ........++.+|.+
T Consensus 82 ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 161 (215)
T 1a04_A 82 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERD 161 (215)
T ss_dssp EEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHC-------CCCGGGSCHHHHH
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCeecCHHHHHHHHHHhcccccCCCccccCCCHHHHH
Confidence 99999999999999999999999999999999999999999876432211100 0000 001122357889999
Q ss_pred HHHHhhcCCchhhhhhhh
Q 006774 181 YASSVNEGTEGTFKAQRK 198 (632)
Q Consensus 181 ~l~~l~eG~~~~~k~~~k 198 (632)
++..+.+|.....++...
T Consensus 162 vl~~l~~g~s~~~Ia~~l 179 (215)
T 1a04_A 162 ILKLIAQGLPNKMIARRL 179 (215)
T ss_dssp HHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 999999887665555543
No 15
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.79 E-value=2.8e-18 Score=157.68 Aligned_cols=122 Identities=25% Similarity=0.397 Sum_probs=112.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~---~~iP 108 (632)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.|+.. +.+|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTR--PDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 3579999999999999999999999999999999999999997654 9999999999999999999999754 6899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~ 155 (632)
||++|+..+.+...++++.|+++||.||++.++|..++++++++...
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999876543
No 16
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.79 E-value=3.8e-18 Score=148.00 Aligned_cols=117 Identities=26% Similarity=0.470 Sum_probs=109.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILS 113 (632)
.+||||||++..+..++..|...+|.+..+.++.+|++.+.... ||+||+|+.||+++|++++++++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQ--PDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCC--CCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 48999999999999999999999999999999999999998765 9999999999999999999999877889999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
+..+.....++++.|+++|+.||++.++|..++++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999988889999999999999999999999999988754
No 17
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.78 E-value=3.1e-18 Score=154.21 Aligned_cols=119 Identities=21% Similarity=0.370 Sum_probs=111.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIIL 112 (632)
.++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+....+|||++
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~l 81 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYM 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEE
Confidence 478999999999999999999998999999999999999998754 999999999999999999999986568999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|+..+.+...++++.|+++||.||++.++|..++++++++.
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 82 TYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp ESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988654
No 18
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.78 E-value=4.8e-18 Score=149.87 Aligned_cols=118 Identities=25% Similarity=0.448 Sum_probs=109.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIII 111 (632)
..+||||||++..+..++.+|...+|.+..+.++.++++.+... .||+||+|+.||+++|++++++++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDV--RNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGC--CSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999999999899999999999999988765 4999999999999999999999975 46899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
+|+..+.....++++.||++|+.||++.++|..++++++++
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988754
No 19
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.78 E-value=5.3e-18 Score=148.38 Aligned_cols=118 Identities=20% Similarity=0.410 Sum_probs=110.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIIL 112 (632)
..+||||||++..+..++.+|+..+|.+..+.++.+|++.+.... ||+||+|+.||+++|++++++++..+.+|+|++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~ 80 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNGLLLARELREQANVALMFL 80 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 358999999999999999999988999999999999999998754 999999999999999999999986678999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
|+..+.....++++.|+++|+.||++.++|...+++++++
T Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 9999998899999999999999999999999999988765
No 20
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.78 E-value=4.5e-18 Score=151.83 Aligned_cols=119 Identities=25% Similarity=0.403 Sum_probs=110.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIII 111 (632)
.++||||||++..+..++.+|+..+|.+..+.++.+|++.+.... ||+||+|+.||+++|++++++++. .+.+|||+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEF--FNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 368999999999999999999998999999999999999998754 999999999999999999999974 56899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 122 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988654
No 21
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.78 E-value=8.4e-18 Score=163.05 Aligned_cols=120 Identities=28% Similarity=0.530 Sum_probs=111.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIII 111 (632)
+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999999999999998764 999999999999999999999975 47899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
+|+..+.+...++++.||++|+.||++.++|..+++.++++..
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999998899999999999999999999999999999987653
No 22
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.78 E-value=8.2e-19 Score=168.48 Aligned_cols=163 Identities=23% Similarity=0.348 Sum_probs=130.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIII 111 (632)
..+||||||++..+..++.+|+..+|.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 81 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPE--QHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVF 81 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTT--SCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhcc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999999999999999999999999988654 4999999999999999999999974 56899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccccccCCccccccCCCChhhHHHHHHhhcCCch
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEG 191 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~~~~~~le~~~~~~lt~~Eie~l~~l~eG~~~ 191 (632)
+|+..+.+...++++.||++|+.||++.++|..++++++++.............. ......++.+|.+++..+.+|...
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~Lt~rE~~vl~~l~~g~s~ 160 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARETQDQL-EQLFSSLTGREQQVLQLTIRGLMN 160 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTSCHHHHHHHHHHTTTCCH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHcCCcH
Confidence 9999988888999999999999999999999999999887543221110000000 111235778888888888877655
Q ss_pred hhhhhhh
Q 006774 192 TFKAQRK 198 (632)
Q Consensus 192 ~~k~~~k 198 (632)
..++...
T Consensus 161 ~~Ia~~l 167 (208)
T 1yio_A 161 KQIAGEL 167 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5544433
No 23
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.78 E-value=5.3e-18 Score=155.12 Aligned_cols=122 Identities=28% Similarity=0.441 Sum_probs=113.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPI 109 (632)
...++||||||++..+..++.+|+..+|.|..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+. .+.+||
T Consensus 12 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 89 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGPTLLARIHQQYPSTTR 89 (153)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSEE
T ss_pred cCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCC--CCEEEEeCCCCcCcHHHHHHHHHhHCCCCeE
Confidence 45689999999999999999999999999999999999999998765 999999999999999999999974 578999
Q ss_pred EEEecCCCHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 110 IMMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~G-A~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
|++|+..+.+...++++.| +++||.||++.++|..+++++++++.
T Consensus 90 i~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~ 135 (153)
T 3hv2_A 90 ILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH 135 (153)
T ss_dssp EEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhH
Confidence 9999999999999999999 99999999999999999999987653
No 24
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.78 E-value=2.4e-18 Score=172.28 Aligned_cols=154 Identities=26% Similarity=0.360 Sum_probs=129.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIIL 112 (632)
.++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+..+.+|||++
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDH--PDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 478999999999999999999999999999999999999998765 999999999999999999999988788999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcccccccc------ccCCc-cccccCCCChhhHHHHHHh
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE------NSGSL-EETDHHKRGSDEIEYASSV 185 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~~------~~~~l-e~~~~~~lt~~Eie~l~~l 185 (632)
|+..+.+...++++.||++||.||++.++|..+++.++++......... ..... .......++.+|.+++..+
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~evL~ll 194 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALL 194 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCCSCCEEETTEEEETTTTEEEETTEEECCCHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcccCceeECCEEEecccCEEEECCEEeecCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876432211100 00000 0111235888999999888
Q ss_pred hcC
Q 006774 186 NEG 188 (632)
Q Consensus 186 ~eG 188 (632)
.++
T Consensus 195 ~~g 197 (249)
T 3q9s_A 195 IRQ 197 (249)
T ss_dssp HHS
T ss_pred HHC
Confidence 776
No 25
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.78 E-value=4.4e-18 Score=149.43 Aligned_cols=116 Identities=25% Similarity=0.466 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIIL 112 (632)
.+||||||++..+..++.+|+..+|.+..+.++.+|++.+.... ||+||+|+.||+++|++++++++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKER--PDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 58999999999999999999998999999999999999998765 999999999999999999999975 578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
|+..+.+...++++.|+++|+.||++.++|..+++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 82 TAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp ESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999987754
No 26
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.78 E-value=8.4e-18 Score=151.19 Aligned_cols=123 Identities=26% Similarity=0.464 Sum_probs=112.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIII 111 (632)
.++||||||++..+..++.+|+..++.+..+.++.+|++.+......||+||+|+.||+++|++++++|+. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 46999999999999999999999999999999999999999853345999999999999999999999974 56899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~ 155 (632)
+|+..+.+...++++.|+++||.||++.++|..+++++++++..
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 126 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKL 126 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876543
No 27
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.78 E-value=1.2e-18 Score=156.54 Aligned_cols=121 Identities=17% Similarity=0.280 Sum_probs=111.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCeEEEEcCHHHHHHHHHH-cCCCceEEEEecCCC-CCCHHHHHHHHhc---cC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMP-DMDGFKLLEHIGL---EM 105 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~-~gy~V~~a~sg~eALe~L~e-~~~~pDLVILDi~MP-dmdGleLL~~Lr~---~~ 105 (632)
..++||||||++..+..++.+|+. .+|+|..+.++.+|++.+.+ . .||+||+|+.|| +++|++++++|+. .+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~--~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLD--SITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCC--CCSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCC--CCcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 457999999999999999999999 89999999999999999876 4 499999999999 9999999999975 57
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 106 ~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
.+|||++|+..+.+...++++.|+++||.||++.++|..++++++++..
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999987653
No 28
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.77 E-value=5.9e-18 Score=147.01 Aligned_cols=118 Identities=28% Similarity=0.380 Sum_probs=110.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILS 113 (632)
++||||||++..+..++..|...++.+..+.++.+++..+.... ||+||+|+.||+++|++++++++..+.+|+|++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 58999999999999999999998999999999999999887764 9999999999999999999999876789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+..+.....++++.|+++|+.||++.++|..++++++++.
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 9999998999999999999999999999999999887653
No 29
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.77 E-value=6.5e-18 Score=147.19 Aligned_cols=116 Identities=28% Similarity=0.485 Sum_probs=106.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe-EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
+++||||||++..+..++.+|+..+|. +..+.++.+|++.+.... ||+||+|+.||+++|++++++++. .+.+|||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEECSCGGGCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEE
Confidence 468999999999999999999998999 568999999999998765 999999999999999999999974 5789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
++|+..+.....++++.|+++|+.||++.++|..++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 80 VCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888764
No 30
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.77 E-value=9.8e-18 Score=147.67 Aligned_cols=119 Identities=32% Similarity=0.543 Sum_probs=109.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC-eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy-~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~~i 107 (632)
+.++||||||++..+..++.+|+..+| .+..+.++.+|++.+... .||+||+|+.||+++|++++++|+. .+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTC--CCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 357899999999999999999998888 789999999999988764 4999999999999999999999975 3578
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
|||++|+..+.+...++++.|+++|+.||++.++|..++++++++
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988764
No 31
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.77 E-value=9.3e-18 Score=153.11 Aligned_cols=122 Identities=18% Similarity=0.294 Sum_probs=109.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEcCHHHHHHHHHHc-----CCCceEEEEecCCCCCCHHHHHHHHhcc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRER-----KGCFDVVLSDVHMPDMDGFKLLEHIGLE 104 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy--~V~~a~sg~eALe~L~e~-----~~~pDLVILDi~MPdmdGleLL~~Lr~~ 104 (632)
..++||||||++..+..++.+|+..++ .|..+.++.+|++.+... ...||+||+|+.||+++|++++++|+..
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 458999999999999999999998776 788999999999998752 1259999999999999999999999754
Q ss_pred ---CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 105 ---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 105 ---~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+.+|||++|+..+.+...++++.||++||.||++.++|..+++++.+..
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999987654
No 32
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.77 E-value=1.6e-18 Score=156.29 Aligned_cols=123 Identities=21% Similarity=0.293 Sum_probs=111.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCC-CCHHHHHHHHhccCCCcEE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-mdGleLL~~Lr~~~~iPII 110 (632)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.+. ..||+||+|+.||+ ++|++++++|+..+.+|||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii 82 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQISELPVV 82 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEE
Confidence 357999999999999999999999999999999999999999762 25999999999995 9999999999877899999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~ 155 (632)
++|+..+.+...++++.|+++||.||++.++|..+++++++++..
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 127 (140)
T 3h5i_A 83 FLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEA 127 (140)
T ss_dssp EEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 999999888888899999999999999999999999999886543
No 33
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.77 E-value=6.5e-18 Score=152.42 Aligned_cols=122 Identities=17% Similarity=0.302 Sum_probs=112.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCe--EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMD 106 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~--V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~~ 106 (632)
..++||||||++..+..++.+|+..++. +..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAK--YDLIILDIGLPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCC--CSEEEECTTCGGGCHHHHHHHHHSSSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcccccC
Confidence 3579999999999999999999998887 889999999999997654 999999999999999999999975 468
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHHHHHhhcc
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKRWN 155 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~-~~eeL~~~L~~vlr~~~~ 155 (632)
+|||++|+..+.+...++++.|+++||.||+ +.++|..+++++++++..
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 82 TPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp CCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 999999999999987643
No 34
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.77 E-value=1e-17 Score=149.32 Aligned_cols=121 Identities=24% Similarity=0.317 Sum_probs=110.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc--CCCcE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDLPV 109 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~--~~iPI 109 (632)
...+||||||++..+..++.+|+..+|.+..+.++.+|+..+.... .||+||+|+.||+++|++++++|+.. +.+||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~i 84 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQK-RIGLMITDLRMQPESGLDLIRTIRASERAALSI 84 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCC-CCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCE
Confidence 4579999999999999999999999999999999999999987643 59999999999999999999999754 78999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|++|+..+.+...++++.|+++||.||++.++|..+++++....
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 85 IVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999887654
No 35
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.77 E-value=3.3e-18 Score=153.31 Aligned_cols=122 Identities=25% Similarity=0.392 Sum_probs=111.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~~iP 108 (632)
..++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP--YAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 3579999999999999999999999999999999999999998765 999999999999999999999974 46899
Q ss_pred EEEEecCCCHHHHH-HHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Q 006774 109 VIMMSADGRVSAVM-RGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (632)
Q Consensus 109 IIILSa~~d~e~~~-eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~ 155 (632)
||++|+..+..... ++++.|+++||.||++.++|..++++++++...
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 99999988777766 888999999999999999999999999987643
No 36
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.77 E-value=1.3e-17 Score=152.16 Aligned_cols=122 Identities=23% Similarity=0.407 Sum_probs=109.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEcCHHHHHHHHHH-------cCCCceEEEEecCCCCCCHHHHHHHHh
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRE-------RKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy--~V~~a~sg~eALe~L~e-------~~~~pDLVILDi~MPdmdGleLL~~Lr 102 (632)
..++||||||++..+..++.+|+..++ .|..+.++.+|++.++. ....||+||+|+.||+++|++++++|+
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 457999999999999999999999988 89999999999999961 123599999999999999999999997
Q ss_pred c---cCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 103 L---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 103 ~---~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
. .+.+|||++|+..+.+...++++.|+++||.||++.++|..+++++.+..
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 5 46799999999999999999999999999999999999999999986644
No 37
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.77 E-value=5.6e-18 Score=149.96 Aligned_cols=120 Identities=26% Similarity=0.445 Sum_probs=103.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
.+++||||||++..+..++.+|+..+|.+..+.++.+|++.+.... ||+||+|+.||+++|++++++++. .+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT--PDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCC--CSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4679999999999999999999999999999999999999997654 999999999999999999999974 5689999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHHHHHhh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 153 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~-~~eeL~~~L~~vlr~~ 153 (632)
++|+..+.+...++++.|+++||.||+ +.++|..+++++++++
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999999999999999999999999999 8999999999988654
No 38
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.77 E-value=6e-18 Score=151.09 Aligned_cols=121 Identities=21% Similarity=0.370 Sum_probs=112.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
..++||||||++..+..++.+|+..++.+..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHA--PDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 3579999999999999999999998999999999999999998865 999999999999999999999974 4689999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
++|+..+.+...++++.|+++||.||++.++|..++++++++..
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKL 127 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988654
No 39
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.77 E-value=1.1e-17 Score=148.31 Aligned_cols=122 Identities=19% Similarity=0.313 Sum_probs=111.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEcCHHHHHHHHHHc-----CCCceEEEEecCCCCCCHHHHHHHHhcc-
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRER-----KGCFDVVLSDVHMPDMDGFKLLEHIGLE- 104 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy--~V~~a~sg~eALe~L~e~-----~~~pDLVILDi~MPdmdGleLL~~Lr~~- 104 (632)
+++||||||++..+..++.+|+..++ .+..+.++.+|++.+... ...||+||+|+.||+++|++++++|+..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 57999999999999999999999888 899999999999999761 0359999999999999999999999754
Q ss_pred --CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 105 --MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 105 --~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
+.+|||++|+..+.+...++++.|+++|+.||++.++|..+++++++.+.
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 57999999999999999999999999999999999999999999987654
No 40
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.77 E-value=8.4e-18 Score=153.30 Aligned_cols=122 Identities=22% Similarity=0.339 Sum_probs=111.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCC--CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCC
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDL 107 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~i 107 (632)
...+|||||||++..+..++.+|+..+ +.+..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.|+. .+.+
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~ 95 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKES--VDIAILDVEMPVKTGLEVLEWIRSEKLET 95 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSC--CSEEEECSSCSSSCHHHHHHHHHHTTCSC
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCC
Confidence 356899999999999999999999876 78999999999999997654 999999999999999999999974 5789
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
|||++|+..+.+...++++.|+++||.||++.++|..+++++++++.
T Consensus 96 ~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 96 KVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 99999999999999999999999999999999999999999987653
No 41
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.77 E-value=5.1e-18 Score=149.68 Aligned_cols=119 Identities=27% Similarity=0.471 Sum_probs=109.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC-eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDL 107 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy-~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~---~~i 107 (632)
..++||||||++..+..++.+|+..+| .+..+.++.+|++.+.... ||+||+|+.||+++|++++++++.. +.+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~ 82 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNP--HHLVISDFNMPKMDGLGLLQAVRANPATKKA 82 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSC--CSEEEECSSSCSSCHHHHHHHHTTCTTSTTC
T ss_pred ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHHHHHHhcCccccCC
Confidence 357899999999999999999998888 7889999999999998654 9999999999999999999999753 578
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
|||++|+..+.....++++.|+++|+.||++.++|..++++++++
T Consensus 83 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 83 AFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988753
No 42
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.76 E-value=6.2e-18 Score=147.82 Aligned_cols=117 Identities=22% Similarity=0.405 Sum_probs=102.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~---~~iPII 110 (632)
.+||||||++..+..++.+|+..+|.+..+.++.+|++.+.... ||+||+|+.||+++|++++++|+.. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENK--PDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 48999999999999999999999999999999999999998765 9999999999999999999999753 578999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
++|+..+.....++++.|+++|+.||++.++|..++++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 999998888888999999999999999999999999887643
No 43
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.76 E-value=2.7e-18 Score=154.10 Aligned_cols=121 Identities=20% Similarity=0.269 Sum_probs=111.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCC--CCHHHHHHHHhc-cCCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGL-EMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd--mdGleLL~~Lr~-~~~iP 108 (632)
..++||||||++..+..++.+|+..+|.|..+.++.+|++.+.+. .||+||+|+.||+ ++|++++++|+. .+.+|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISD--DAIGMIIEAHLEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCT--TEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCC
Confidence 357999999999999999999999999999999999999988654 4999999999999 999999999974 46899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
||++|+..+.+...++++.|+++||.||++.++|..+++++.+...
T Consensus 83 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 83 TIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999987653
No 44
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.76 E-value=1e-17 Score=149.70 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=107.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC--CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPI 109 (632)
.++||||||++..+..++.+|+..+ +.+..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.+||
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~--~dlvilD~~lp~~~g~~~~~~l~~~~~~~~i 80 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYN--PNVVILDIEMPGMTGLEVLAEIRKKHLNIKV 80 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCSCEE
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHHHCCCCcE
Confidence 3689999999999999999999775 56778999999999998765 999999999999999999999975 568999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|++|+..+.+...++++.|+++||.||++.++|..++++++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 81 IIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred EEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999887653
No 45
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.76 E-value=8.3e-18 Score=149.09 Aligned_cols=120 Identities=25% Similarity=0.327 Sum_probs=104.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~~iP 108 (632)
..++||||||++..+..++.+|+ .+|.+..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~p 79 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHP--PDVLISDVNMDGMDGYALCGHFRSEPTLKHIP 79 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCccCCCC
Confidence 45799999999999999999999 7899999999999999998765 999999999999999999999975 35799
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~ 155 (632)
||++|+..+... .++++.|+++||.||++.++|..++++++++...
T Consensus 80 ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 80 VIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp EEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 999999888777 8899999999999999999999999999986543
No 46
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.76 E-value=1e-17 Score=148.58 Aligned_cols=119 Identities=28% Similarity=0.469 Sum_probs=108.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCc
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLP 108 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~--~~~iP 108 (632)
.++||||||++..+..++.+|... ++.+. .+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ 79 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKR--PDILLLDIIMPHLDGLAVLERIRAGFEHQPN 79 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHHCSSCCE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCc
Confidence 368999999999999999999987 78865 8999999999998765 999999999999999999999975 36789
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
||++|+..+.+...++++.|+++||.||++.++|..++++++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 80 VIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999987653
No 47
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.76 E-value=4.5e-18 Score=151.02 Aligned_cols=120 Identities=17% Similarity=0.236 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIII 111 (632)
+|||||||++..+..++.+|+..++.+. .+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+. .+.+|||+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcC--CCEEEEecCCCCCChHHHHHHHHhcCCCCeEEE
Confidence 7999999999999999999999999987 8999999999998765 999999999999999999999974 56899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~ 155 (632)
+|+..+.+...++++.|+++|+.||++.++|..+++++++++..
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 123 (134)
T 3f6c_A 80 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 123 (134)
T ss_dssp EECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCB
T ss_pred EeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEE
Confidence 99999988899999999999999999999999999999876543
No 48
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.76 E-value=8.2e-18 Score=155.07 Aligned_cols=120 Identities=26% Similarity=0.379 Sum_probs=110.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPI 109 (632)
..++||||||++..+..++.+|+..+|.+. .+.++.+|++.+.+....||+||+|+.||+++|++++++|+. .+.+||
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~i 114 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARV 114 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCE
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcE
Confidence 347999999999999999999999999988 999999999999876213899999999999999999999974 578999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
|++|+..+.+...++++.|+++||.||++.++|..+++++++
T Consensus 115 i~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 115 IMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred EEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999987753
No 49
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.76 E-value=1.2e-17 Score=150.98 Aligned_cols=123 Identities=18% Similarity=0.370 Sum_probs=112.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCC
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~~i 107 (632)
..+++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTH--PHLIITEANMPKISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHTSTTTTTS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCC--CCEEEEcCCCCCCCHHHHHHHHHcCcccCCC
Confidence 34689999999999999999999999999999999999999998865 999999999999999999999975 4689
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~ 155 (632)
|||++|+..+.....++++.|+++||.||++.++|..+++++++....
T Consensus 84 pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~ 131 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYE 131 (147)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred CEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999876543
No 50
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.76 E-value=1.7e-17 Score=148.84 Aligned_cols=121 Identities=18% Similarity=0.289 Sum_probs=110.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEcCHHHHHHHHHHcC---CCceEEEEecCCCCCCHHHHHHHHhc---
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK---GCFDVVLSDVHMPDMDGFKLLEHIGL--- 103 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy--~V~~a~sg~eALe~L~e~~---~~pDLVILDi~MPdmdGleLL~~Lr~--- 103 (632)
..++||||||++..+..++.+|+..++ .|..+.++.+|++.+.+.. ..||+||+|+.||+++|++++++|+.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 468999999999999999999999998 8999999999999998710 24999999999999999999999975
Q ss_pred --cCCCcEEEEecCCCHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 104 --EMDLPVIMMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 104 --~~~iPIIILSa~~d~e~~~eAl~~G-A~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
.+.+|||++|+..+.....+++..| +++||.||++.++|..+++++...
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999999 999999999999999999988754
No 51
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.76 E-value=2.4e-17 Score=147.30 Aligned_cols=121 Identities=26% Similarity=0.346 Sum_probs=111.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCe-EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRR-CLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMD 106 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~-~gy~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~~ 106 (632)
..++||||||++..+..++.+|+. .+|. +..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK--PDVVMLDLMMVGMDGFSICHRIKSTPATAN 84 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC--CSEEEEETTCTTSCHHHHHHHHHTSTTTTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcC--CCEEEEecccCCCcHHHHHHHHHhCccccC
Confidence 467999999999999999999998 8999 999999999999998765 999999999999999999999975 467
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
+|||++|+..+.....++++.|+++||.||++.++|..++++++++..
T Consensus 85 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 85 IIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999987653
No 52
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=1.2e-17 Score=150.62 Aligned_cols=118 Identities=26% Similarity=0.453 Sum_probs=109.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIIL 112 (632)
.+||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.+|||++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSK--PQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHC--CSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 48999999999999999999988999999999999999998765 999999999999999999999975 468999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|+..+.+...++++.|+++||.||++.++|..++++++++.
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 123 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988754
No 53
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.76 E-value=5.8e-18 Score=149.23 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=106.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCcE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~~iPI 109 (632)
.++||||||++..+..++.+|+..+|.|..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG--YDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 469999999999999999999999999999999999999998765 999999999999999999999975 468999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
|++|+..+.+. .+++..|+++||.||++.++|...+++..+.
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 99999988877 8889999999999999999999999887654
No 54
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.76 E-value=2e-17 Score=148.53 Aligned_cols=123 Identities=23% Similarity=0.373 Sum_probs=112.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEcCHHHHHHHHHHcC--------CCceEEEEecCCCCCCHHHHHHHH
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK--------GCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy--~V~~a~sg~eALe~L~e~~--------~~pDLVILDi~MPdmdGleLL~~L 101 (632)
.+++||||||++..+..++.+|+..++ .+..+.++.+|++.+.... ..||+||+|+.||+++|++++++|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 84 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEI 84 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHH
Confidence 457899999999999999999999988 8999999999999998610 259999999999999999999999
Q ss_pred hcc---CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 102 GLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 102 r~~---~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
+.. +.+|||++|+..+.+...++++.|+++||.||++.++|..+++++++.+.
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 85 KQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp TTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred HhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 864 67999999999999999999999999999999999999999999987653
No 55
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.75 E-value=1.9e-17 Score=147.27 Aligned_cols=119 Identities=28% Similarity=0.501 Sum_probs=109.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~-~~iPIII 111 (632)
+.+||||||++..+..++..|...+|.+..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.. +.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK--PDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEE
Confidence 468999999999999999999999999999999999999998765 9999999999999999999999754 6799999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+|+..+......+++.|+++||.||++.++|...+++++++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999988888889999999999999999999999999988653
No 56
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.75 E-value=1.5e-17 Score=168.00 Aligned_cols=123 Identities=30% Similarity=0.401 Sum_probs=112.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~---~~iP 108 (632)
..++||||||++..+..+...|+..++.|..+.++.+|++.+.+.. .||+||+|+.||++||++++++|+.. ..+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~-~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHP-AIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC-CCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 4579999999999999999999999999999999999999997642 48999999999999999999999753 3689
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~ 155 (632)
||++|+..+.....++++.||+|||.||++.++|...++++++....
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 248 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQ 248 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999876533
No 57
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.75 E-value=6.9e-18 Score=152.60 Aligned_cols=123 Identities=18% Similarity=0.297 Sum_probs=110.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCC-CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~g-y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iP 108 (632)
..+.+||||||++..+..++.+|+..+ |.+..+.++.+++..+.+....||+||+|+.||+++|++++++|+. .+.+|
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 97 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLT 97 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCc
Confidence 356899999999999999999999988 9999999999888877542014999999999999999999999974 56899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
||++|+..+.+...++++.||++||.||++.++|..+++++++++
T Consensus 98 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 98 CLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999998754
No 58
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.75 E-value=1.3e-17 Score=164.55 Aligned_cols=154 Identities=25% Similarity=0.401 Sum_probs=127.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIIL 112 (632)
.++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+..+.+|||++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~l 82 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELR--PDLVLLDLMLPGMNGIDVCRVLRADSGVPIVML 82 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEE
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 368999999999999999999999999999999999999998765 999999999999999999999987678999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccccccCCc---------c-ccccCCCChhhHHHH
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSL---------E-ETDHHKRGSDEIEYA 182 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~~~~~~l---------e-~~~~~~lt~~Eie~l 182 (632)
|+..+.....++++.||++||.||++.++|..+++.++++.............+ . ......++.+|.+++
T Consensus 83 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~vL 162 (238)
T 2gwr_A 83 TAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDDEPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLL 162 (238)
T ss_dssp EETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSSCCCCEEEETTEEEETTTTEEEETTEEECCCHHHHHHH
T ss_pred eCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhcccCcccceecCceEEcccccEEEECCEEcccCHHHHHHH
Confidence 999998888999999999999999999999999999887642211110000000 0 111235788999999
Q ss_pred HHhhcC
Q 006774 183 SSVNEG 188 (632)
Q Consensus 183 ~~l~eG 188 (632)
..+.++
T Consensus 163 ~~l~~~ 168 (238)
T 2gwr_A 163 VALARK 168 (238)
T ss_dssp HHHHHS
T ss_pred HHHHHC
Confidence 888877
No 59
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.75 E-value=3.2e-17 Score=146.29 Aligned_cols=121 Identities=21% Similarity=0.333 Sum_probs=112.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCC-CCCHHHHHHHHhccCCCcE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPV 109 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MP-dmdGleLL~~Lr~~~~iPI 109 (632)
..++||||||++..+..++.+|+..+|.+. .+.++.+|++.+.... ||+||+|+.|| +++|+++++.|+..+.+||
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLR--PDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 467999999999999999999999899999 5999999999998765 99999999998 7999999999975588999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
|++|+..+.....++++.|+++||.||++.++|..++++++++..
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 130 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKK 130 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999987653
No 60
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.75 E-value=2.3e-18 Score=177.53 Aligned_cols=118 Identities=23% Similarity=0.322 Sum_probs=108.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCC-CCCHHHHHHHHhccCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MP-dmdGleLL~~Lr~~~~iPII 110 (632)
+.+||||||++.++..++.+|+..||.|. .+.++.+|++.+.+.. |||||+|+.|| +|||+++++.||...++|||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~--~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI 237 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRT--PGLVLADIQLADGSSGIDAVKDILGRMDVPVI 237 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCC--CSEEEEESCCTTSCCTTTTTHHHHHHTTCCEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCC--CCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEE
Confidence 45899999999999999999999999999 9999999999998765 99999999999 79999999999866699999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
++|+..+ ...++++.|+++||.||++.++|..+|+++++...
T Consensus 238 ~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 238 FITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp EEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSC
T ss_pred EEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 9999853 46678899999999999999999999999987653
No 61
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.74 E-value=1.6e-17 Score=161.86 Aligned_cols=153 Identities=24% Similarity=0.352 Sum_probs=127.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILS 113 (632)
++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+..+.+|||++|
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt 82 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAG--ADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVT 82 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEe
Confidence 68999999999999999999999999999999999999998765 9999999999999999999999876889999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccccc----cccccCCc---------c-ccccCCCChhhH
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENK----EHENSGSL---------E-ETDHHKRGSDEI 179 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~----~~~~~~~l---------e-~~~~~~lt~~Ei 179 (632)
+..+.....++++.||++|+.||++.++|..++++++++...... .......+ . ......++.+|.
T Consensus 83 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~ 162 (230)
T 2oqr_A 83 ARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEF 162 (230)
T ss_dssp CCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTTTCTTSTTCCSCEEETTEEEETTTTEEEESSBCCCCCHHHH
T ss_pred CCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcccccccccccceeecCEEEeccccEEEECCeeeecCHHHH
Confidence 998888899999999999999999999999999999876422111 00000000 0 111245788999
Q ss_pred HHHHHhhcC
Q 006774 180 EYASSVNEG 188 (632)
Q Consensus 180 e~l~~l~eG 188 (632)
+++..+.++
T Consensus 163 ~vL~~l~~~ 171 (230)
T 2oqr_A 163 DLLEYLMRN 171 (230)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 999888776
No 62
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.74 E-value=1.7e-17 Score=159.47 Aligned_cols=120 Identities=27% Similarity=0.373 Sum_probs=111.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPII 110 (632)
...+||||||++..+..++.+|...+|.+. .+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.....|||
T Consensus 12 m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~--~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii 89 (205)
T 1s8n_A 12 VPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHK--PDLVIMDVKMPRRDGIDAASEIASKRIAPIV 89 (205)
T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCSCEE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCEE
Confidence 346999999999999999999999999988 8999999999998765 9999999999999999999999866566999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
++|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 90 ~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 90 VLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988754
No 63
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.74 E-value=4.3e-17 Score=148.60 Aligned_cols=122 Identities=25% Similarity=0.343 Sum_probs=110.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCe--EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCC
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDL 107 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~gy~--V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~i 107 (632)
..+.|||||||++..+..++.+|+..++. +..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.|+. .+.+
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 90 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHL--PDVALLDYRMPGMDGAQVAAAVRSYELPT 90 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCSC
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCC
Confidence 45789999999999999999999988744 558999999999998865 999999999999999999999974 5689
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
|||++|+..+.+...++++.|+++||.||++.++|..+++.+++++.
T Consensus 91 ~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 91 RVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred eEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999987653
No 64
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.74 E-value=1.9e-18 Score=154.50 Aligned_cols=119 Identities=18% Similarity=0.136 Sum_probs=108.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCC-CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~g-y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPI 109 (632)
...+||||||++..+..++.+|+..+ |.|..+.++.+|++.+... .||+||+|+.||+++|++++++|+. .+.+||
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 90 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADT--RPGIVILDLGGGDLLGKPGIVEARALWATVPL 90 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTC--CCSEEEEEEETTGGGGSTTHHHHHGGGTTCCE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhcc--CCCEEEEeCCCCCchHHHHHHHHHhhCCCCcE
Confidence 45799999999999999999999999 9999999999999988654 4999999999999999999999975 458999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
|++|+..+.+...++++.|+++||.||++.++|..+++++++.
T Consensus 91 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 91 IAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999887643
No 65
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.74 E-value=2.6e-17 Score=160.44 Aligned_cols=154 Identities=31% Similarity=0.429 Sum_probs=127.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIII 111 (632)
.++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENR--PDAIVLDINMPVLDGVSVVTALRAMDNDVPVCV 84 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999999999999998764 999999999999999999999975 47899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccc--c-ccccccCCc----------cccccCCCChhh
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNE--N-KEHENSGSL----------EETDHHKRGSDE 178 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~--~-~~~~~~~~l----------e~~~~~~lt~~E 178 (632)
+|+..+.+...++++.||++||.||++.++|..+++.++++.... . ........+ .......++.+|
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE 164 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKRE 164 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHHCCCCCCCCEEEETTEEEETTTTEEEETTEECCCCHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhccccccccCcccccCCeEEccCccEEEECCEEeccCHHH
Confidence 999998888889999999999999999999999999998865331 1 100000000 011124578899
Q ss_pred HHHHHHhhcC
Q 006774 179 IEYASSVNEG 188 (632)
Q Consensus 179 ie~l~~l~eG 188 (632)
.+++..+.+|
T Consensus 165 ~~vL~~l~~g 174 (233)
T 1ys7_A 165 FDLLAVLAEH 174 (233)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999988887
No 66
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.74 E-value=3.2e-17 Score=149.56 Aligned_cols=121 Identities=25% Similarity=0.461 Sum_probs=111.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
.+++||||||++..+..++.+|+. ++.|..+.++.+|++.+.+.. +||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 80 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSD-PFSVIMVDMRMPGMEGTEVIQKARLISPNSVYL 80 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSC-CCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEE
Confidence 457999999999999999999986 899999999999999998754 3699999999999999999999974 5789999
Q ss_pred EEecCCCHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 111 MMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~G-A~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
++|+..+.+...++++.| +++||.||++.++|..+++.+++++.
T Consensus 81 ~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 81 MLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp EEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999999987653
No 67
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.74 E-value=3.5e-17 Score=164.49 Aligned_cols=120 Identities=31% Similarity=0.481 Sum_probs=112.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI 205 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVI 205 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSC--CSEEEEEESSCSSCCHHHHHHHHHHHCCSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 4689999999999999999999999999999999999999998765 999999999999999999999974 4689999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
++|+..+.+...++++.|+++||.||++.++|..++++++++.
T Consensus 206 ~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 206 GVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp EEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988654
No 68
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.74 E-value=5.2e-18 Score=148.92 Aligned_cols=118 Identities=27% Similarity=0.444 Sum_probs=108.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~---~~iPII 110 (632)
++||||||++..+..++.+|+..+|.+..+.++.+|++.+... .||+||+|+.||+++|++++++++.. +.+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSS--CCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 5899999999999999999999899999999999999988654 49999999999999999999999754 679999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
++|+..+.+...++++.|+++|+.||++.++|...+++++++.
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999998888889999999999999999999999999887643
No 69
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.74 E-value=4.9e-17 Score=143.90 Aligned_cols=119 Identities=24% Similarity=0.373 Sum_probs=102.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC---CCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM---DLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~---~iP 108 (632)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+... ..+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE--PAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTC--CSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 4579999999999999999999999999999999999999998765 99999999999999999999998543 355
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
||+++..... ...++++.|+++||.||++.++|..++++.....
T Consensus 83 ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 83 ILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred EEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 5555555544 7789999999999999999999999999887543
No 70
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.74 E-value=1e-17 Score=150.37 Aligned_cols=120 Identities=21% Similarity=0.313 Sum_probs=101.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~---~~iPI 109 (632)
.++||||||++..+..++.+|+.. +.|..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+.. +.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHH--PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHC--CSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 468999999999999999999987 99999999999999998865 9999999999999999999999754 68999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~ 155 (632)
|++|+..+.+...++++.|+++||.||++.++|..+++++++++..
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence 9999998888888999999999999999999999999999876543
No 71
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.74 E-value=3.5e-17 Score=147.16 Aligned_cols=117 Identities=30% Similarity=0.444 Sum_probs=105.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~---~~iPII 110 (632)
++||||||++..+..++.+|+..+|.+..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.. +.+|||
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 81 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATP--PDLVLLDIMMEPMDGWETLERIKTDPATRDIPVL 81 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 68999999999999999999999999999999999999998764 9999999999999999999999753 478999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
++|+..+......++..|+++||.||++.++|..++++++++
T Consensus 82 ~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 82 MLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp EEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred EEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 999987766555666777899999999999999999988754
No 72
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.74 E-value=3e-17 Score=147.39 Aligned_cols=120 Identities=23% Similarity=0.332 Sum_probs=110.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
..++||||||++..+..++.+|+..+|.|..+.++.+|++.+... .||+||+|+ ||+++|+++++.|+. .+.+|||
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii 79 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRRE--KIDLVFVDV-FEGEESLNLIRRIREEFPDTKVA 79 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTS--CCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcc--CCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEE
Confidence 457999999999999999999999999999999999999999865 499999999 999999999999974 5689999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
++|+..+.+...++++.|+++|+.||++.++|..++++++++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 80 VLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp EEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred EEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999987543
No 73
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.74 E-value=4.9e-17 Score=148.53 Aligned_cols=121 Identities=24% Similarity=0.448 Sum_probs=111.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTS--VQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSC--CSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 4579999999999999999999999999999999999999997654 999999999999999999999974 5689999
Q ss_pred EEecCCCHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 111 MMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~G-A~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
++|+..+.....++++.| +++||.||++.++|..+++++++.+.
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 999999988899999998 99999999999999999999887553
No 74
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.73 E-value=5.8e-17 Score=144.58 Aligned_cols=119 Identities=27% Similarity=0.442 Sum_probs=110.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCC-----CCCHHHHHHHHhc-cCC
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGL-EMD 106 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MP-----dmdGleLL~~Lr~-~~~ 106 (632)
.++||||||++..+..++.+|+..+|.|..+.++.+|++.+.+.. ||+||+|+.|| +++|+++++.|+. .+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREEN--PEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSC--EEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCC--CCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 479999999999999999999999999999999999999998765 99999999999 9999999999974 578
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+|||++|+..+.+...++++.|+++|+.||++.++|..+++++++++
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 99999999999989999999999999999999999999999988654
No 75
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.73 E-value=1.4e-17 Score=149.17 Aligned_cols=122 Identities=25% Similarity=0.398 Sum_probs=112.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~~iP 108 (632)
..++||||||++..+..++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF--SGVVLLDIMMPGMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC--CEEEEEESCCSSSCHHHHHHHHHHTTCCTTEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 4679999999999999999999999999999999999999998754 999999999999999999999975 46799
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~ 155 (632)
||++|+..+.+...++++.|+++||.||++.++|..++++++++.+.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 84 IVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp EEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 99999998888888899999999999999999999999999876544
No 76
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.72 E-value=6.5e-18 Score=165.27 Aligned_cols=167 Identities=9% Similarity=0.006 Sum_probs=128.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCeEEE-EcCHHHHHH-HHHHcCCCceEEEEecCCCCCCHHHHHHHHhc--cCC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVTT-CSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMD 106 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~-~gy~V~~-a~sg~eALe-~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~--~~~ 106 (632)
..++||||||++..+..++.+|+. .++.+.. +.++.+++. .+... .||+||+|+.||+++|++++++|+. .+.
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~--~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 83 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESR--SIQMLVIDYSRISDDVLTDYSSFKHISCPD 83 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGG--GCCEEEEEGGGCCHHHHHHHHHHHHHHCTT
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhcc--CCCEEEEeCCCCCCCHHHHHHHHHHhhCCC
Confidence 458999999999999999999984 5888754 455666554 35444 4999999999999999999999976 688
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcccccccc--------c-cCCccccccCCCChh
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE--------N-SGSLEETDHHKRGSD 177 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~~--------~-~~~le~~~~~~lt~~ 177 (632)
+|||++|+..+......+++.||++||.||++.++|..+++.++++......... . ...........++.+
T Consensus 84 ~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~r 163 (225)
T 3klo_A 84 AKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKR 163 (225)
T ss_dssp CEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCCHHHHHHHHHHHHTTCCCCCCHHHHTSCHH
T ss_pred CcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEeeCHHHHHHHHHHhhcccccccccccccCCHH
Confidence 9999999999988889999999999999999999999999999876533221100 0 000011122457889
Q ss_pred hHHHHHHhhcCCchhhhhhhhhc
Q 006774 178 EIEYASSVNEGTEGTFKAQRKRI 200 (632)
Q Consensus 178 Eie~l~~l~eG~~~~~k~~~k~i 200 (632)
|.+++..+..|.....++....+
T Consensus 164 E~~vL~~l~~g~s~~~Ia~~l~~ 186 (225)
T 3klo_A 164 EQQIIKLLGSGASNIEIADKLFV 186 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHhCC
Confidence 99999999888766555554433
No 77
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.72 E-value=6.7e-18 Score=165.66 Aligned_cols=164 Identities=23% Similarity=0.260 Sum_probs=133.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CeE-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCL-YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~g-y~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPII 110 (632)
++||||||++..+..++.+|+..+ |.+ ..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 79 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAAR--PDVAVLDVRLPDGNGIELCRDLLSRMPDLRCL 79 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSEETTEEHHHHHHHHHHHCTTCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 689999999999999999999876 885 47999999999998765 999999999999999999999974 5789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcccccccccc--CCc-----cccccCCCChhhHHHHH
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENS--GSL-----EETDHHKRGSDEIEYAS 183 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~~~~~--~~l-----e~~~~~~lt~~Eie~l~ 183 (632)
++|+..+.+...++++.||++||.||++.++|..+++.++++........... ... .......++.+|.+++.
T Consensus 80 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~vL~ 159 (225)
T 3c3w_A 80 ILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLG 159 (225)
T ss_dssp EGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCTTTTSCHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHHHHHHhcccccccccccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999988654322110000 000 00122458889999999
Q ss_pred HhhcCCchhhhhhhhh
Q 006774 184 SVNEGTEGTFKAQRKR 199 (632)
Q Consensus 184 ~l~eG~~~~~k~~~k~ 199 (632)
.+.+|.....++....
T Consensus 160 ~l~~g~s~~eIa~~l~ 175 (225)
T 3c3w_A 160 LLSEGLTNKQIADRMF 175 (225)
T ss_dssp HHHTTCCHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHhC
Confidence 9998876665555443
No 78
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.72 E-value=2.8e-17 Score=175.39 Aligned_cols=118 Identities=31% Similarity=0.441 Sum_probs=111.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006774 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIILS 113 (632)
+||||||++.++..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||++||++++++|+. .+.+|||++|
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT 79 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF--FPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVIT 79 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBC--CSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEe
Confidence 7999999999999999999999999999999999999998765 999999999999999999999974 5789999999
Q ss_pred cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
++.+.+...++++.||+|||.||++.++|..+++++++...
T Consensus 80 ~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 80 GHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp CSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999987653
No 79
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.72 E-value=4.4e-17 Score=141.07 Aligned_cols=113 Identities=25% Similarity=0.406 Sum_probs=102.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIIL 112 (632)
.+||||||++..+..++..|+..+|.+..+.++.+|++.+.... ||+||+|+.||+++|++++++++. .+.+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGN--YDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 48999999999999999999999999999999999999998754 999999999999999999999974 468999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
|+..+.. .++++.|+++|+.||++.++|..++++++
T Consensus 80 s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 80 TAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9876655 67789999999999999999999888764
No 80
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.72 E-value=6.6e-17 Score=144.40 Aligned_cols=118 Identities=21% Similarity=0.354 Sum_probs=104.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cC----C
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EM----D 106 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~----~ 106 (632)
.+++||||||++..+..++.+|+..++.|..+.++.+|++.+.. . +|+||+|+.||+++|++++++|+. .+ .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~--~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 82 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSH-E--HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCT-T--CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-c--CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCC
Confidence 46899999999999999999999999999999999999988753 2 499999999999999999999963 22 2
Q ss_pred C-cEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 107 L-PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 107 i-PIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
. +||++|+..+.....++++.|+++||.||++.++|..+++++++.
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 3 578899999998899999999999999999999999999988754
No 81
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.72 E-value=2.6e-17 Score=149.01 Aligned_cols=118 Identities=27% Similarity=0.371 Sum_probs=100.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh--CCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006774 34 LRVLVVDDDITCLRILEQMLRR--CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~--~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPI 109 (632)
++||||||++..+..++..|.. .++.+. .+.++.++++.+... .||+||+|+.||+++|++++++|+. .+.+||
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~i 80 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKH--PPNVLLTDVRMPRMDGIELVDNILKLYPDCSV 80 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTS--CCSEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Confidence 6899999999999999999974 577777 899999999988764 4999999999999999999999974 578999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|++|+..+.+...++++.|+++||.||++.++|..+++++++..
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 124 (141)
T 3cu5_A 81 IFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp EEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999988888889999999999999999999999999988754
No 82
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.71 E-value=1.2e-16 Score=145.86 Aligned_cols=120 Identities=21% Similarity=0.352 Sum_probs=110.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~-~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iP 108 (632)
.+++||||||++..+..++.+|+. .+|.+. .+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ 81 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETT--PDIVVMDLTLPGPGGIEATRHIRQWDGAAR 81 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCC
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCe
Confidence 357999999999999999999998 789988 8999999999998754 999999999999999999999975 56899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
||++|+..+.+...++++.|+++||.||++.++|..+++++++++
T Consensus 82 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 82 ILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp EEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred EEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999887654
No 83
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.71 E-value=1e-16 Score=146.65 Aligned_cols=120 Identities=29% Similarity=0.501 Sum_probs=110.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIII 111 (632)
+++||||||++..+..++.+|...+|.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ 80 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSAD--FAGIVISDIRMPGMDGLALFRKILALDPDLPMIL 80 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTT--CCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 57999999999999999999999999999999999999988764 4999999999999999999999974 57899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~ 154 (632)
+|+..+.....++++.|+++||.||++.++|..+++++++++.
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 81 VTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999998899999999999999999999999999999887543
No 84
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.71 E-value=2.1e-16 Score=141.96 Aligned_cols=117 Identities=25% Similarity=0.364 Sum_probs=105.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIIL 112 (632)
.+||||||++..+..++.+|+.. |.+..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|+|++
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEW--VQVIICDQRMPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSC--EEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 37999999999999999999875 89999999999999998754 999999999999999999999974 467899999
Q ss_pred ecCCCHHHHHHHHhc-CCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 113 SADGRVSAVMRGIRH-GACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~-GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|+..+.....+++.. |+++||.||++.++|..+++++++..
T Consensus 79 s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 79 TGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp ESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 999888888888875 59999999999999999999887653
No 85
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.71 E-value=1.8e-16 Score=142.24 Aligned_cols=120 Identities=20% Similarity=0.311 Sum_probs=107.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEcCHHHHHHHHHHc----CCCceEEEEecCCCCCCHHHHHHHHhcc-
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRER----KGCFDVVLSDVHMPDMDGFKLLEHIGLE- 104 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy--~V~~a~sg~eALe~L~e~----~~~pDLVILDi~MPdmdGleLL~~Lr~~- 104 (632)
..++||||||++..+..++.+|+..++ .|..+.++.+|++.++.. ...||+||+|+.||+++|+++++.|+..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 85 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS 85 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc
Confidence 457899999999999999999998887 899999999999999861 1259999999999999999999999754
Q ss_pred --CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 105 --MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 105 --~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
+.+|||++|+..+.+...++++.|+++||.||++.++|..++.....
T Consensus 86 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 86 SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999988776543
No 86
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.71 E-value=1.3e-16 Score=154.81 Aligned_cols=151 Identities=23% Similarity=0.274 Sum_probs=123.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~-~~iPIII 111 (632)
.++||||||++..+..++.+|+..+ .|..+.++.+|++.+ . .||+||+|+.||+++|+++++.|+.. +.+|||+
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~--~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ 76 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE--E--AFHVVVLDVMLPDYSGYEICRMIKETRPETWVIL 76 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC--S--CCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc--C--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 3689999999999999999999888 899999999999876 2 49999999999999999999999754 7899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcccccc---c--c-ccCCc-cccccCCCChhhHHHHHH
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKE---H--E-NSGSL-EETDHHKRGSDEIEYASS 184 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~~~~~---~--~-~~~~l-e~~~~~~lt~~Eie~l~~ 184 (632)
+|+..+.+...++++.||++|+.||++.++|..+++.++++....... . . ..... .......++.+|.+++..
T Consensus 77 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~~ 156 (220)
T 1p2f_A 77 LTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREKKGLYDFGDLKIDATGFTVFLKGKRIHLPKKEFEILLF 156 (220)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCCCSEEEETTEEEETTTTEEEETTEECCCCHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccccccCcccccEEEECCCCEEEECCEEEecCHHHHHHHHH
Confidence 999999999999999999999999999999999999998865311000 0 0 00000 011123578899999988
Q ss_pred hhcC
Q 006774 185 VNEG 188 (632)
Q Consensus 185 l~eG 188 (632)
+..+
T Consensus 157 l~~~ 160 (220)
T 1p2f_A 157 LAEN 160 (220)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 8877
No 87
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.70 E-value=1.3e-16 Score=138.99 Aligned_cols=115 Identities=17% Similarity=0.340 Sum_probs=106.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCC-CCCHHHHHHHHhcc---CCCcE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLE---MDLPV 109 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MP-dmdGleLL~~Lr~~---~~iPI 109 (632)
++||||||++..+..++..|+..+|.+..+.++.+|++.+.... ||+||+|+.|| +++|++++++++.. +.+||
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDR--PDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHC--CSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcC--CCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 58999999999999999999999999999999999999998765 99999999999 99999999999754 68999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
|++ +..+.....++++.|+++|+.||++.++|...++++++
T Consensus 84 i~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 84 VII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp EEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 999 88888888899999999999999999999999988764
No 88
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.70 E-value=6.7e-17 Score=171.85 Aligned_cols=119 Identities=28% Similarity=0.510 Sum_probs=107.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIII 111 (632)
.++||||||++..+..++.+|+..+|+|..+.++.+|++.+.+.. ||+||+|+.||++||++++++|+. .+.+|||+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~ 82 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQ--PDLVICDLRMPQIDGLELIRRIRQTASETPIIV 82 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSC--CSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEE
Confidence 579999999999999999999999999999999999999998765 999999999999999999999974 56899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHHHHHhh
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 153 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~-~~eeL~~~L~~vlr~~ 153 (632)
+|+..+.+...++++.||+|||.||+ ..++|..++++++++.
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999 6899999998887653
No 89
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.69 E-value=1.3e-16 Score=145.51 Aligned_cols=121 Identities=19% Similarity=0.215 Sum_probs=99.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEEcCHHHHHHHHHH-cCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~-gy-~V~~a~sg~eALe~L~e-~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iP 108 (632)
.++||||||++..+..++.+|+.. ++ .+..+.++.+|++.+.. . .||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 80 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADN--TVDLILLDVNLPDAEAIDGLVRLKRFDPSNA 80 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTC--CCSEEEECC------CHHHHHHHHHHCTTSE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccC--CCCEEEEeCCCCCCchHHHHHHHHHhCCCCe
Confidence 479999999999999999999987 77 68899999999999986 4 4999999999999999999999974 56899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~ 155 (632)
||++|+..+.+...++++.|+++||.||++.++|..++++++++...
T Consensus 81 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~ 127 (154)
T 2qsj_A 81 VALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIF 127 (154)
T ss_dssp EEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCB
T ss_pred EEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEE
Confidence 99999999888899999999999999999999999999999876544
No 90
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.69 E-value=2.4e-16 Score=169.10 Aligned_cols=118 Identities=29% Similarity=0.515 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIIL 112 (632)
++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.+|||++
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 58999999999999999999988999999999999999998764 999999999999999999999974 578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|++.+.+...++++.||+|||.||++.++|..+++++++.+
T Consensus 79 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 79 TGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988643
No 91
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.69 E-value=5.1e-16 Score=138.79 Aligned_cols=117 Identities=17% Similarity=0.251 Sum_probs=106.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC-CCcE
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPV 109 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~-~iPI 109 (632)
..+.+||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+|| ||+++|+++++.|+..+ .+||
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----~~~~~g~~~~~~l~~~~~~~~i 89 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSIVV 89 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSC--CSEEE----ECSTTHHHHHHHHHHHSTTSEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCC--CCEEE----EcCccHHHHHHHHHhcCCCccE
Confidence 45789999999999999999999999999999999999999998764 99999 89999999999997557 8999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHHHHHhh
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 153 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~-~~eeL~~~L~~vlr~~ 153 (632)
|++|+..+.+...++++.|+++||.||+ +.++|..+++++++++
T Consensus 90 i~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 90 LVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred EEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999 9999999999887543
No 92
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.69 E-value=2.9e-16 Score=169.50 Aligned_cols=118 Identities=32% Similarity=0.499 Sum_probs=110.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~---~~iPII 110 (632)
.+||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+.. +.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDL--PDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 48999999999999999999999999999999999999998765 9999999999999999999999753 578999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
++|+..+.+...++++.||++||.||++.++|..+++.+++..
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887643
No 93
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.69 E-value=6.9e-16 Score=138.61 Aligned_cols=120 Identities=19% Similarity=0.369 Sum_probs=103.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~-gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~-~~iP 108 (632)
..++||||||++..+..++.+|+.. ++.+ ..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.. +..|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNK--VDAIFLDINIPSLDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCC--CSEEEECSSCSSSCHHHHHHHHTTSTTCCE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHccCCCce
Confidence 3579999999999999999999875 7874 58999999999998765 9999999999999999999999754 4567
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~~~ 155 (632)
||++|+..+ ...++++.|+++||.||++.++|..+++++++.+..
T Consensus 86 ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (143)
T 2qv0_A 86 IVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQ 130 (143)
T ss_dssp EEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 888888743 567889999999999999999999999998876543
No 94
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.69 E-value=1.2e-16 Score=144.49 Aligned_cols=115 Identities=23% Similarity=0.313 Sum_probs=95.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iP 108 (632)
+...+||||||++..+..++.+|+.. ++.+. .+.++.+|++.+.+.. .||+||+|+.||+++|++++++|+.....|
T Consensus 11 ~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~-~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ 89 (145)
T 3kyj_B 11 GSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQP-NVDLILLDIEMPVMDGMEFLRHAKLKTRAK 89 (145)
T ss_dssp CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCT-TCCEEEECTTSCCCTTCHHHHHHHHHCCCE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCC
Confidence 34578999999999999999999987 88865 8999999999998761 499999999999999999999998666689
Q ss_pred EEEEec--CCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHH
Q 006774 109 VIMMSA--DGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (632)
Q Consensus 109 IIILSa--~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L 146 (632)
+|++++ ..+.+...++++.|+++||.||++.++|...+
T Consensus 90 iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i 129 (145)
T 3kyj_B 90 ICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEE 129 (145)
T ss_dssp EC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------
T ss_pred eEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 999987 56667788999999999999999966665443
No 95
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.68 E-value=2.4e-16 Score=141.72 Aligned_cols=116 Identities=24% Similarity=0.442 Sum_probs=101.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc------cCC
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL------EMD 106 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~------~~~ 106 (632)
.++||||||++..+..++.+|+..++.+..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSC--CSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 368999999999999999999988999999999999999998754 999999999999999999999974 367
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+|||++|+........ +.|+++||.||++.++|..++++++++.
T Consensus 88 ~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 88 ASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred eEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 8999999876543322 7899999999999999999999887644
No 96
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.67 E-value=8.9e-16 Score=135.48 Aligned_cols=119 Identities=21% Similarity=0.360 Sum_probs=106.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCC-CCHHHHHHHHhc-cCCCcE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGL-EMDLPV 109 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-mdGleLL~~Lr~-~~~iPI 109 (632)
.+++||||||++..+..++..|...+|.+..+.++.+|++.+.+. ..||+||+|+.||+ ++|++++++|+. .+.+||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~i 82 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPI 82 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCE
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCE
Confidence 357999999999999999999999999999999999999999865 14999999999997 999999999974 468999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|++|+..+.....++++.| +|+.||++.++|..+++++++..
T Consensus 83 i~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 83 VYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred EEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 9999998888777777665 79999999999999999988754
No 97
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.67 E-value=6.3e-16 Score=143.90 Aligned_cols=118 Identities=27% Similarity=0.370 Sum_probs=100.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCC-Ce-EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCL-YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~g-y~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPI 109 (632)
..++||||||++..+..++.+|+..+ +. +..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+....+||
T Consensus 24 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~l~~~lr~~~~~~i 101 (164)
T 3t8y_A 24 RVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELK--PDVITMDIEMPNLNGIEALKLIMKKAPTRV 101 (164)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHSCCEE
T ss_pred CccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCceE
Confidence 46899999999999999999999874 33 458999999999998765 999999999999999999999986555999
Q ss_pred EEEecCCCHH--HHHHHHhcCCcEEEeCCCC---------HHHHHHHHHHHHH
Q 006774 110 IMMSADGRVS--AVMRGIRHGACDYLIKPIR---------EEELKNIWQHVVR 151 (632)
Q Consensus 110 IILSa~~d~e--~~~eAl~~GA~DYL~KP~~---------~eeL~~~L~~vlr 151 (632)
|++++..+.. ...++++.||++||.||++ .++|..++++++.
T Consensus 102 i~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~ 154 (164)
T 3t8y_A 102 IMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMN 154 (164)
T ss_dssp EEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTT
T ss_pred EEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhC
Confidence 9999876643 6778999999999999999 4566666655543
No 98
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.67 E-value=3.6e-16 Score=151.89 Aligned_cols=149 Identities=14% Similarity=0.163 Sum_probs=121.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC-CCcEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~-~iPIIIL 112 (632)
|+||||||++..+..++.+|...+|.|..+.++.+|++.+... .||+|| ||+++|+++++.|+..+ .+|||++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----lp~~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----VSDKNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTS--CCSEEE----ECCTTHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcC--CCCEEE----eCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 5799999999999999999999899999999999999998765 499999 99999999999997556 8999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHHHHHhh--cccccc-c--cc-cCCcc-ccccCCCChhhHHHHHH
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR--WNENKE-H--EN-SGSLE-ETDHHKRGSDEIEYASS 184 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~-~~eeL~~~L~~vlr~~--~~~~~~-~--~~-~~~le-~~~~~~lt~~Eie~l~~ 184 (632)
|+..+.+...++++.||++||.||+ +.++|..+++.++++. ...... . .. ..... ......++.+|.+++..
T Consensus 75 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vL~~ 154 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTH 154 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSCCCCSEEETTEEEETTTTEEEETTEEECCCSTTTHHHHH
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccccCCeEEECCEEEecccCEEEECCEEEecCHHHHHHHHH
Confidence 9999999999999999999999999 9999999999998764 111100 0 00 00000 11123478889999988
Q ss_pred hhcC
Q 006774 185 VNEG 188 (632)
Q Consensus 185 l~eG 188 (632)
+.++
T Consensus 155 l~~~ 158 (223)
T 2hqr_A 155 LARH 158 (223)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8877
No 99
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.67 E-value=2.6e-16 Score=134.60 Aligned_cols=112 Identities=21% Similarity=0.246 Sum_probs=102.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~---~~iPII 110 (632)
.+||||||++..+..++..|+..+|.+..+.++.++++.+.... ||+||+|+.|++++|+++++.++.. +.+|||
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~--~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ--PIVILMAWPPPDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 58999999999999999999999999999999999999998765 9999999999999999999999754 689999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
++|+..+.. ++++.|+++|+.||++.++|...+++++
T Consensus 80 ~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 80 LFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 999987766 8889999999999999999998887654
No 100
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.66 E-value=1.6e-16 Score=140.48 Aligned_cols=118 Identities=22% Similarity=0.352 Sum_probs=105.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIII 111 (632)
.++||||||++..+..++.+|+..++.+..+.+++++++.+.. . ||+||+|+.||+++|++++++|+. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLIL 79 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 4799999999999999999999888899999999999887643 3 999999999999999999999974 56899999
Q ss_pred EecCCCH-----HHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 112 MSADGRV-----SAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 112 LSa~~d~-----e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+|+..+. +...++++.|+++||.||++.++|..+++++....
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 80 ISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred EEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 9998874 66677889999999999999999999999886543
No 101
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.66 E-value=5.7e-16 Score=161.25 Aligned_cols=118 Identities=27% Similarity=0.359 Sum_probs=107.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCc
Q 006774 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~-~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~~iP 108 (632)
..+||||||++..+..++.+|.. .+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIK--PTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 46799999999999999999964 5899999999999999998765 999999999999999999999975 35799
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
||++|+..+.+...++++.||+|||.||++.++|..+++.+++.
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~~ 139 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSRS 139 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887653
No 102
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.64 E-value=4.6e-16 Score=139.25 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=101.1
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHH-cCCCceEEEEecCCCCCCHHHHHHHHhc-cCC
Q 006774 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (632)
Q Consensus 29 ~~p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e-~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~ 106 (632)
..+.+.+||||||++..+..++.+|+..+|.+..+.++.+|++.+.. .. ||+||+|+.||+++|+++++.|+. .+.
T Consensus 11 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~l~~~~~~ 88 (138)
T 2b4a_A 11 HHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLST--CDLLIVSDQLVDLSIFSLLDIVKEQTKQ 88 (138)
T ss_dssp ---CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGS--CSEEEEETTCTTSCHHHHHHHHTTSSSC
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCC
Confidence 34567899999999999999999999999999999999999999876 54 999999999999999999999975 468
Q ss_pred CcEEEEe-cCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 107 LPVIMMS-ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 107 iPIIILS-a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
+|||++| +..+... .+++ +++|+.||++.++|..++++++++
T Consensus 89 ~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 89 PSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp CEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred CCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHh
Confidence 9999999 8776655 5555 999999999999999999876543
No 103
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.63 E-value=6e-16 Score=147.66 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=103.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~-~~iPII 110 (632)
.+++||||||++..+..++.+|...||.+..+.++.+|+ . ..||+||+|+.||+++|+ +++.++.. +.+|||
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii 83 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLV 83 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCccchH-HHHHHhccCCCCCEE
Confidence 357999999999999999999998899999888877766 2 259999999999999999 88888766 889999
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
++|+..+.+...++++.|+++||.||++.++|..+++.+++..
T Consensus 84 ~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 84 ALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887654
No 104
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.62 E-value=1.2e-15 Score=163.30 Aligned_cols=120 Identities=22% Similarity=0.299 Sum_probs=104.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~-~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~-~~iPII 110 (632)
.++||||||++..+..++.+|+. .++.|..+.++.+|++.+.... .||+||+|+.||++||++++++++.. +..+||
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~-~~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii 81 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCG-HVDIAICDLQMSGMDGLAFLRHASLSGKVHSVI 81 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHS-CEEEEEECSSCSSSCHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 47999999999999999999998 5789999999999999998731 39999999999999999999999754 455677
Q ss_pred EEecCCCH-----HHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 111 MMSADGRV-----SAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 111 ILSa~~d~-----e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
++|+..+. ....++++.||++||.||++.++|..+++++++..
T Consensus 82 ~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 82 LSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp ESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred EEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 67776665 56778889999999999999999999999988754
No 105
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.62 E-value=5.8e-16 Score=125.77 Aligned_cols=62 Identities=65% Similarity=1.082 Sum_probs=59.6
Q ss_pred CCCCCcccchHHHHHHHHHHHHHhccccccHHHHHHHhcCCCcChHHHHHHHHHHHHHHHHh
Q 006774 217 TTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRL 278 (632)
Q Consensus 217 ~~kK~rv~wt~eLh~~Fl~av~~LgidkA~pK~ILelM~v~gltre~taSHLqRvr~ylk~L 278 (632)
..+|+++.|+.|||+.|++|+++||.++|+||.|+++|+++++|+++|+|||||||.+++++
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 45789999999999999999999999999999999999999999999999999999999876
No 106
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.61 E-value=2.3e-17 Score=143.56 Aligned_cols=119 Identities=34% Similarity=0.469 Sum_probs=107.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIII 111 (632)
..+||||||++..+..++..|...++.+..+.++.++++.+... .||+||+|+.||+++|++++++++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII 80 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSC--CCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEE
Confidence 35799999999999999999998899999999999999988654 4999999999999999999999974 56899999
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+|+..+.+...++++.|+++|+.||++.++|..+++++++++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp BCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 999888888888999999999999999999999999887653
No 107
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.56 E-value=2.8e-14 Score=151.37 Aligned_cols=118 Identities=30% Similarity=0.442 Sum_probs=103.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~-gy~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPII 110 (632)
.+|||||||++..+..++.+|+.. +|+ +..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+....+|||
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~--pDlVllDi~mp~~dGlell~~l~~~~p~pVI 80 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFN--PDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV 80 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEECCCSSSCHHHHHHHHHHSSCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHhcCCCcEE
Confidence 479999999999999999999986 888 569999999999998765 9999999999999999999999765559999
Q ss_pred EEecCCCH--HHHHHHHhcCCcEEEeCCCCH---------HHHHHHHHHHHHh
Q 006774 111 MMSADGRV--SAVMRGIRHGACDYLIKPIRE---------EELKNIWQHVVRK 152 (632)
Q Consensus 111 ILSa~~d~--e~~~eAl~~GA~DYL~KP~~~---------eeL~~~L~~vlr~ 152 (632)
++|+..+. +...++++.||+|||.||++. ++|...++++.+.
T Consensus 81 vlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 99988765 447889999999999999983 7777777777654
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.52 E-value=1.4e-14 Score=146.18 Aligned_cols=102 Identities=22% Similarity=0.304 Sum_probs=85.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~-gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIIL 112 (632)
.|||||||++.++..++..|... ++.+.. .++.+++..+... .||+||+|+.||+++|++++++++.. .+|||++
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~-~~~~~~~~~~~~~--~~dlvllD~~mP~~~G~~~~~~lr~~-~~pvi~l 80 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDA-FDTLEGARHCQGD--EYVVALVDLTLPDAPSGEAVKVLLER-GLPVVIL 80 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEE-ESSTGGGTTCCTT--TEEEEEEESCBTTBTTSHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEE-eChHHHHHHhhcC--CCcEEEEeCCCCCCCHHHHHHHHHhC-CCCEEEE
Confidence 58999999999999999999764 777754 4555555544333 59999999999999999999999853 6999999
Q ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCH
Q 006774 113 SADGRVSAVMRGIRHGACDYLIKPIRE 139 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~ 139 (632)
|+..+.+...++++.||+||+.||...
T Consensus 81 t~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 81 TADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp ECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 999999999999999999999999643
No 109
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.49 E-value=3.4e-14 Score=164.70 Aligned_cols=120 Identities=13% Similarity=0.202 Sum_probs=108.5
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCC----CCHHHHHHHH
Q 006774 34 LRVLVVDDDI-TC-------LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD----MDGFKLLEHI 101 (632)
Q Consensus 34 lrVLIVDDd~-~i-------r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd----mdGleLL~~L 101 (632)
|||||||||. .. ++.|+..|+..||+|..+.++++|+..+.... .||+||+|++||+ ++|++++++|
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~-~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNE-AIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTC-CCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCC-CCcEEEEeCCCCcccccccHHHHHHHH
Confidence 4899999999 88 99999999999999999999999999987642 4999999999999 9999999999
Q ss_pred hcc-CCCcEEEEecCCC-HHHHHHHHhcCCcEEEeCCCCHHH-HHHHHHHHHHhhc
Q 006774 102 GLE-MDLPVIMMSADGR-VSAVMRGIRHGACDYLIKPIREEE-LKNIWQHVVRKRW 154 (632)
Q Consensus 102 r~~-~~iPIIILSa~~d-~e~~~eAl~~GA~DYL~KP~~~ee-L~~~L~~vlr~~~ 154 (632)
|.. ..+|||++|+..+ .+....++..||+||+.||++..+ |...|++++|++.
T Consensus 80 R~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~~ 135 (755)
T 2vyc_A 80 HERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_dssp HHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence 854 5899999999876 667778899999999999999999 8899999998753
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.82 E-value=3.3e-09 Score=102.79 Aligned_cols=93 Identities=24% Similarity=0.403 Sum_probs=77.6
Q ss_pred CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 58 y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
+.|..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+. .+..++++++.....+...++++.|+++|+.||
T Consensus 6 ~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp EEEECCCSSSTTHHHHHHHC--CSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESH
T ss_pred EEEEECCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCC
Confidence 45566889999999998765 999999999999999999999974 445677777777778888999999999999999
Q ss_pred --CCHHHHHHHHHHHHHh
Q 006774 137 --IREEELKNIWQHVVRK 152 (632)
Q Consensus 137 --~~~eeL~~~L~~vlr~ 152 (632)
++..++...+.+.+..
T Consensus 84 ~~~~~~~l~~~i~~~~~~ 101 (237)
T 3cwo_X 84 AAVENPSLITQIAQTFGS 101 (237)
T ss_dssp HHHHCTHHHHHHHHHHTG
T ss_pred cccChHHHHHHHHHHhCC
Confidence 7777888777776643
No 111
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.81 E-value=9e-08 Score=103.10 Aligned_cols=117 Identities=21% Similarity=0.285 Sum_probs=99.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCcE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~~iPI 109 (632)
..+|++|||+...+..+...|.. .+.+....+..+++. .... .||++++|+.||+|+|+++++.++. ...+||
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~~--~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pi 227 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAGG--PVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPV 227 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHHS--SCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCE
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hccC--CCCEEEEecCCCCCcHHHHHHHHHhCccccCCcE
Confidence 46899999999888888888865 466777888888763 3333 5899999999999999999999974 347899
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
|++|+..+.....++++.|++||+.||+..+++...+..+++.+
T Consensus 228 i~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 228 LAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp EEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 99999999988899999999999999999999988887776543
No 112
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=98.00 E-value=3.1e-06 Score=88.88 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=64.6
Q ss_pred cChHHHHHHHHHHHHHHHHhhhhhhhcCCCcccccc-ccccccccCcCccee--eeeccCCCCChHHHHHHHH-hhcC
Q 006774 259 LTRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAP-IETNVKLGSLGRFDI--QALAASGQIPPQTLAALHA-ELLG 332 (632)
Q Consensus 259 ltre~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~-i~~AspLHDiGKi~i--~iL~KpGkL~~ee~~imk~-~~~G 332 (632)
...+.+..|..+|..++..| |+.+|++++.+.. +..|+.||||||+.+ .||.|+|+|+++||+.|+. ..+|
T Consensus 162 ~~~~~~~~Hs~~Va~la~~l---a~~lgl~~~~~~~~l~~aaLLHDIGk~~ip~~il~k~~~L~~~E~~~~~~H~~~G 236 (328)
T 3tm8_A 162 NTDKTISHHGVTVSTLSIAL---AQKLGITDPKKTQLLTLGALLHDYGHHHSPLNLNQPLDSMSPEDLALWKKHPIEG 236 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHH---HHHHTCCCHHHHHHHHHHHHHTTGGGTTCSCCCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHHHH---HHHcCcCHHHHHHHHHHHHHHhcCCcccCCHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 34456999999999999999 9999999999998 999999999999998 9999999999999999998 3445
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.79 E-value=0.0017 Score=74.99 Aligned_cols=104 Identities=14% Similarity=0.170 Sum_probs=79.2
Q ss_pred HHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEEEecCCCHHHHHHH
Q 006774 46 LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRVSAVMRG 124 (632)
Q Consensus 46 r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr-~~~~iPIIILSa~~d~e~~~eA 124 (632)
...|...|+..||+|..+.+.++|+..++++. +++.||+|++++ +.+++++|| .+.++||++++.......+.-.
T Consensus 19 i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~~-~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~~ 94 (715)
T 3n75_A 19 IRELHRALERLNFQIVYPNDRDDLLKLIENNA-RLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSLN 94 (715)
T ss_dssp HHHHHHHHHHTTCEEECCSSHHHHHHHHHHCT-TEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGGT
T ss_pred HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhCC-CceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccchh
Confidence 44566788888999999999999999998763 799999999885 788999997 4679999999887543322111
Q ss_pred HhcCCcEEEeCCC-CHHHHHHHHHHHHHhh
Q 006774 125 IRHGACDYLIKPI-REEELKNIWQHVVRKR 153 (632)
Q Consensus 125 l~~GA~DYL~KP~-~~eeL~~~L~~vlr~~ 153 (632)
.-.++++|+.+.. +.+.+...|.+..+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 124 (715)
T 3n75_A 95 DLRLQISFFEYALGAAEDIANKIKQTTDEY 124 (715)
T ss_dssp TSCCEEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred hhhccCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 2357889999885 5566666666666655
No 114
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=96.78 E-value=0.0022 Score=63.71 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=71.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPII 110 (632)
..+.+||||||++..+..+...|..+|+++..+.+. ....+|++|+|+.+++..+. ..+|
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~---------~~~~~~~ii~d~~~~~~~~~-----------~~~i 68 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ---------EPTPEDVLITDEVVSKKWQG-----------RAVV 68 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC---------CCCTTCEEEEESSCSCCCCS-----------SEEE
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC---------CCCcCcEEEEcCCCcccccc-----------ceEE
Confidence 467899999999999999999999999999887641 12358999999999875431 1255
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.++....... ...+...++.||+...++...+.++..
T Consensus 69 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 69 TFCRRHIGIP----LEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp EECSSCCCSC----CTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred EEecccCCCc----ccccCCceeccccchHHHHHHHHHHhh
Confidence 5555432110 123456789999998888888777653
No 115
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=96.38 E-value=0.00048 Score=71.22 Aligned_cols=70 Identities=13% Similarity=0.028 Sum_probs=58.5
Q ss_pred CcChHHHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCccee-------------eeeccCCCCChHHHH
Q 006774 258 GLTRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI-------------QALAASGQIPPQTLA 324 (632)
Q Consensus 258 gltre~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i-------------~iL~KpGkL~~ee~~ 324 (632)
.+..+....|..+++.+++.| |++.|++ ..+.+..|+.||||||+.+ .++.|+++|+++|++
T Consensus 113 ~~~~~~~~~hs~~va~~a~~l---a~~~~~~--~~~~~~~agllHDIGkl~l~~~~p~~~~~il~~~~~~~~~l~~~E~~ 187 (305)
T 3hc1_A 113 PLNRSTLWAHSLGVARIAKLI---AERTGFL--NPVNVYVAGLLHDVGEVFINFFRGKEFSQVVTLVDEEKITFGQAEER 187 (305)
T ss_dssp SSCHHHHHHHHHHHHHHHHHH---HHHTTCS--CHHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHH---HHHcCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 345677899999999999999 9999886 3678888999999999986 235799999999999
Q ss_pred HHH-H-hhcC
Q 006774 325 ALH-A-ELLG 332 (632)
Q Consensus 325 imk-~-~~~G 332 (632)
+|+ + ..+|
T Consensus 188 ~~~~~H~~iG 197 (305)
T 3hc1_A 188 LFGTSHCEVG 197 (305)
T ss_dssp HHSSCHHHHH
T ss_pred HHCCCHHHHH
Confidence 997 4 4555
No 116
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=95.79 E-value=0.045 Score=48.19 Aligned_cols=104 Identities=18% Similarity=0.155 Sum_probs=79.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCcEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~~iPII 110 (632)
-.||+|..|-.+.-.+++++....|.++......+ ....|+|+|+..+-.. .|.. ....-+|
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~~--------e~~AdlIfCEYlLLPe-------~ifS~k~~~~~dli 77 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQ--------ELSADLVVCEYSLLPR-------EIRSPKSLEGSFVL 77 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCCC--------CTTEEEEEEEGGGSCT-------TCCCCTTCCSCEEE
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccccCC--------cccceeEEEeeecChH-------HhcCCCCCCcccEE
Confidence 46899999999999999999877898877653322 1247999999765321 1221 1234577
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
++-..-+.+...+.++.||. ||..|+++.-|.++|+..+|..
T Consensus 78 VLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 78 VLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp EEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred EEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 77777888899999999999 9999999999999999988753
No 117
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=95.24 E-value=0.0019 Score=62.62 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCccee--eeeccCCC----CChHHHHHHHH-hhcC
Q 006774 262 ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI--QALAASGQ----IPPQTLAALHA-ELLG 332 (632)
Q Consensus 262 e~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i--~iL~KpGk----L~~ee~~imk~-~~~G 332 (632)
+.+-.|..+|+..+..| |+..|++.+ .+..|+-||||||+.+ .++.++++ |+++|+..++. ..+|
T Consensus 25 ~~~~~Hs~~Va~~A~~l---A~~~g~d~~---~~~~AgLLHDIGK~~~~~~il~~~~~~~~~l~~~E~~~~~~H~~~G 96 (196)
T 2ogi_A 25 DKRFNHVLGVERAAIEL---AERYGYDKE---KAGLAALLHDYAKELSDDEFLRLIDKYQPDPDLKKWGNNIWHGLVG 96 (196)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHTCCHH---HHHHHHHHTTTTTTCCHHHHHHHHHHHCCCTGGGGSCHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHCcCHH---HHHHHHHHHHcCCcCCHHHHHHHHHhcCCCCCHHHHHHHhccHHHH
Confidence 46889999999999999 999999764 4667889999999976 67766554 78888877776 4455
No 118
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.00 E-value=0.13 Score=49.04 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHcCCCceEEEEec-CCCCCCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEE------eC
Q 006774 65 QAAVALDILRERKGCFDVVLSDV-HMPDMDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL------IK 135 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi-~MPdmdG--leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL------~K 135 (632)
+..+.++.+.... ..++++.++ .++.++| .+++++++...++|||.+++....+...++++.|+++++ .+
T Consensus 131 ~~~~~i~~~~~~~-~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKRG-AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHHT-CSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhcC-CCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 4556666555543 357999997 5666666 557777776678999999999999999999999999985 67
Q ss_pred CCCHHHHHHHHH
Q 006774 136 PIREEELKNIWQ 147 (632)
Q Consensus 136 P~~~eeL~~~L~ 147 (632)
|++..+++..++
T Consensus 210 ~~~~~~~~~~l~ 221 (237)
T 3cwo_X 210 EIDVRELKEYLK 221 (237)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 888888876543
No 119
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=94.99 E-value=0.0019 Score=62.06 Aligned_cols=61 Identities=10% Similarity=-0.060 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCccee--eeeccCCC----CChHHHHHHHH
Q 006774 262 ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI--QALAASGQ----IPPQTLAALHA 328 (632)
Q Consensus 262 e~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i--~iL~KpGk----L~~ee~~imk~ 328 (632)
+.+-.|..+|+..+..| |+..|++.+ .+..|+-||||||+.+ .++.++++ |+++|+..++.
T Consensus 17 ~~~~~Hs~~Va~~A~~l---A~~~g~~~~---~~~~agLLHDIGk~~~~~~il~~~~~~~~~l~~~e~~~~~~ 83 (188)
T 2o08_A 17 EHRYQHTIGVMETAIDL---AKLYGADQQ---KAELAAIFHDYAKFRDKNEMRTLIREKLSQQDILFYGDELL 83 (188)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHTCCHH---HHHHHHHHTTTTTTSCHHHHHHHHHHHCSCCGGGGSCGGGS
T ss_pred HHHHHHHHHHHHHHHHH---HHHHCcCHH---HHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCHHHHHHHhh
Confidence 46889999999999999 999999765 3667889999999976 66665544 67777755554
No 120
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=94.57 E-value=0.0034 Score=60.46 Aligned_cols=61 Identities=7% Similarity=-0.091 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCccee--eeeccCCC----CChHHH-HHHHH
Q 006774 262 ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI--QALAASGQ----IPPQTL-AALHA 328 (632)
Q Consensus 262 e~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i--~iL~KpGk----L~~ee~-~imk~ 328 (632)
+.+-.|..+|+.++..| |...|++.+ .+..|+-||||||+.+ .++.++++ |+++|+ ..++.
T Consensus 18 ~~~~~Hs~~Va~~A~~l---A~~~g~d~~---~~~~AgLLHDiGk~~~~~~il~~~~~~~~~l~~~E~~~~~~~ 85 (190)
T 3ccg_A 18 EKRYKHSLGVMDTAVRL---AGIYNEDTE---KARIAGLVHDCAKKLPGEKIIEICTNEGYELGDEDIRNSYLL 85 (190)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHTCCHH---HHHHHHHHTTTTTTSCHHHHHHHHHHTTCCCCHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHH---HHHHCcCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCCHHHHhHHHcc
Confidence 45888999999999999 999999875 3667889999999977 67776654 677776 44444
No 121
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=94.33 E-value=0.91 Score=42.53 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=81.7
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---EcCHHHHHHHHHHcCCCceEEEEecCCCC-C-CHHHHHHHHh
Q 006774 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIG 102 (632)
Q Consensus 32 ~glrVLIV----DDd~~ir~~L~~lL~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVILDi~MPd-m-dGleLL~~Lr 102 (632)
...||++. |-+..=...+..+|+..||+|.. ....++..+.+.+.. ||+|.+...+.. + .-.++++.|+
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~--~diV~lS~~~~~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED--VDVIGVSILNGAHLHLMKRLMAKLR 94 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT--CSEEEEEESSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEeechhhHHHHHHHHHHHH
Confidence 34678887 77788888999999999999974 456788888888765 999999887763 1 2334566665
Q ss_pred cc--CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 103 LE--MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 103 ~~--~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
.. .+++|++ .+..-......+.+.|++.++..--+..+....++.++.++
T Consensus 95 ~~g~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 95 ELGADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HTTCTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 43 3566554 45444444445568999976655456666777777766543
No 122
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=89.02 E-value=2.6 Score=41.74 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=67.2
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecC------CCCCCHHHHHHHH
Q 006774 33 GLRVLVVDD----DITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEHI 101 (632)
Q Consensus 33 glrVLIVDD----d~~ir~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~------MPdmdGleLL~~L 101 (632)
|..++++|- ++.....+.+.+++.+..+. .+.+.+++...... .+|+|.+-.. .....++++++++
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~li~~l 177 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPVEPDLAMVTQL 177 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCCCCCHHHHHHH
Confidence 344555543 23333334444455566554 67888888776653 3898864322 1234468999999
Q ss_pred hccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 102 r~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+.. ++|||.-.+-.+.+.+.++++.||++++.=
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 178 SHA-GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp HTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 765 899999988888999999999999999865
No 123
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=88.35 E-value=0.25 Score=50.04 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=63.6
Q ss_pred HHHHHHHhccccccHHHHHHHhcCCC-------c---ChHHHHHHHHHHHHHHHHhhhhhhhc----CCCcccccccccc
Q 006774 233 FVSAVNQLGIDKAVPKRILELMNVPG-------L---TRENVASHLQKFRLYLKRLNGVSQQG----GITNSFCAPIETN 298 (632)
Q Consensus 233 Fl~av~~LgidkA~pK~ILelM~v~g-------l---tre~taSHLqRvr~ylk~L~~~A~~~----Gls~~~~e~i~~A 298 (632)
.-+|+..||++.- +.+...+.... . ....+-.|..+++.+++.| |+.. |++....+.+..+
T Consensus 79 i~~Av~~LG~~~l--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~vA~~a~~l---a~~~~~~~~~~~~~~~~~~la 153 (281)
T 3i7a_A 79 INSAVTRIGLTQI--KSIATSVAMEQLFISTNEMVWEVMDEVWRTSIDVTAAACSL---LQIYNKKHPGSGLNYDTLTLA 153 (281)
T ss_dssp HHHHHHHHCTTTH--HHHHHHHTTGGGSCCCCTTTHHHHHHHHHHHHHHHHHHHHH---HHHHHHHSTTCCCCHHHHHHH
T ss_pred HHHHHHHHhHHHH--HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH---HHHHhhccccCCCCHHHHHHH
Confidence 4467888888754 44444332211 1 1235788999999999999 7776 6677777888888
Q ss_pred ccccCcCccee--eeeccCCCCChHH---HHHHHH-hhcC
Q 006774 299 VKLGSLGRFDI--QALAASGQIPPQT---LAALHA-ELLG 332 (632)
Q Consensus 299 spLHDiGKi~i--~iL~KpGkL~~ee---~~imk~-~~~G 332 (632)
..||||||+.+ .+..+++.++..+ +..++. ..+|
T Consensus 154 GLLHdiGkl~l~~~~~~~~~~l~~~~~~~~~~~~~H~~iG 193 (281)
T 3i7a_A 154 GLVHNIGALPVLTEAEAHPEMFTTIEHLRSLVRKMQGPIG 193 (281)
T ss_dssp HHHTTTTHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHhHHhhHHHhcChHHHHHHHhCcHHHHH
Confidence 99999999976 4556677666543 334444 3445
No 124
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=86.65 E-value=5.5 Score=39.41 Aligned_cols=85 Identities=16% Similarity=0.156 Sum_probs=60.6
Q ss_pred HHHHHHHHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecC------CCCCCHHHHHHHHhccCCCcEEEEecCCCHH
Q 006774 47 RILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEHIGLEMDLPVIMMSADGRVS 119 (632)
Q Consensus 47 ~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~------MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e 119 (632)
..+.+.+++.+..+. .+.+.+++...... .+|+|.+-.. .....+++++++++.. ++|||.-.+-.+.+
T Consensus 119 ~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~-~ipvIA~GGI~t~~ 194 (232)
T 3igs_A 119 EALLARIHHHHLLTMADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPEEPDLPLVKALHDA-GCRVIAEGRYNSPA 194 (232)
T ss_dssp HHHHHHHHHTTCEEEEECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT-TCCEEEESCCCSHH
T ss_pred HHHHHHHHHCCCEEEEeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc-CCcEEEECCCCCHH
Confidence 334444455566554 67788888776643 3898864322 1223468899999765 89999988888899
Q ss_pred HHHHHHhcCCcEEEeC
Q 006774 120 AVMRGIRHGACDYLIK 135 (632)
Q Consensus 120 ~~~eAl~~GA~DYL~K 135 (632)
.+.++++.||++++.=
T Consensus 195 d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 195 LAAEAIRYGAWAVTVG 210 (232)
T ss_dssp HHHHHHHTTCSEEEEC
T ss_pred HHHHHHHcCCCEEEEe
Confidence 9999999999999764
No 125
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=85.53 E-value=7.8 Score=40.47 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=74.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC---CCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRC---LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~---gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iP 108 (632)
..+|+.|+|.|+...+.|..+|... .+++..|++.+.+.+.+++.. +|++|+|-.+.... .......+
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~~--~dilli~e~~~~~~-------~~~~~~~~ 90 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYR--IDVLIAEEDFNIDK-------SEFKRNCG 90 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHT--CSEEEEETTCCCCG-------GGGCSSCE
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcCC--CCEEEEcchhhhhh-------hhhcccCc
Confidence 3589999999999999999999753 688999999999999998765 99999997775421 11123456
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
+++++.....+ ...-...+.|--+.+++...+....
T Consensus 91 v~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 91 LAYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp EEEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHH
Confidence 67776543221 1112246788888888876666555
No 126
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=84.44 E-value=23 Score=31.86 Aligned_cols=106 Identities=13% Similarity=0.003 Sum_probs=69.5
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE---EEcCHHHHHHHHHHcCCCceEEEEecCCCCC-C-HHHHHHHHhcc-C-CCcEEEE
Q 006774 40 DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPDM-D-GFKLLEHIGLE-M-DLPVIMM 112 (632)
Q Consensus 40 DDd~~ir~~L~~lL~~~gy~V~---~a~sg~eALe~L~e~~~~pDLVILDi~MPdm-d-GleLL~~Lr~~-~-~iPIIIL 112 (632)
|-+..=...+..+|+..||+|. .....++..+.+.+.. +|+|.+...+... . --++++.++.. . +++|+ +
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~-v 90 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETK--ADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLY-V 90 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHT--CSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEE-E
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEE-E
Confidence 3445556678888999999987 5677889888888765 9999999877531 1 23455666532 2 56654 4
Q ss_pred ecCC-----CHHH-HHHHHhcCCcEEEeCCCCHHHHHHHHHH
Q 006774 113 SADG-----RVSA-VMRGIRHGACDYLIKPIREEELKNIWQH 148 (632)
Q Consensus 113 Sa~~-----d~e~-~~eAl~~GA~DYL~KP~~~eeL~~~L~~ 148 (632)
.+.. +... ...+.+.|++.|..---+..++...+..
T Consensus 91 GG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~ 132 (137)
T 1ccw_A 91 GGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKK 132 (137)
T ss_dssp EESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHH
T ss_pred ECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 4432 2222 3456689998888655667766655544
No 127
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=84.25 E-value=8.4 Score=39.23 Aligned_cols=103 Identities=16% Similarity=0.109 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhCCCeEE--EEcCHHHHHHHHHHcCCCceEEEEecCCCC-----CCHHHHHHHHhccCCCcEEEEecCC
Q 006774 44 TCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIGLEMDLPVIMMSADG 116 (632)
Q Consensus 44 ~ir~~L~~lL~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MPd-----mdGleLL~~Lr~~~~iPIIILSa~~ 116 (632)
...+.. +.|.+.||.|. +..+...|.++.. .. +++| +.+..|- ..-+++++.|+...++|||.=.+-.
T Consensus 123 ~tv~aa-~~L~~~Gf~Vlpy~~dd~~~akrl~~-~G--~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~ 197 (265)
T 1wv2_A 123 ETLKAA-EQLVKDGFDVMVYTSDDPIIARQLAE-IG--CIAV-MPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVG 197 (265)
T ss_dssp HHHHHH-HHHHTTTCEEEEEECSCHHHHHHHHH-SC--CSEE-EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCC
T ss_pred HHHHHH-HHHHHCCCEEEEEeCCCHHHHHHHHH-hC--CCEE-EeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCC
Confidence 333333 34445689877 5566666655543 33 6777 5544441 2237899999888899999877778
Q ss_pred CHHHHHHHHhcCCcEEEeCC-----CCHHHHHHHHHHHHH
Q 006774 117 RVSAVMRGIRHGACDYLIKP-----IREEELKNIWQHVVR 151 (632)
Q Consensus 117 d~e~~~eAl~~GA~DYL~KP-----~~~eeL~~~L~~vlr 151 (632)
..+.+..+++.||++.+.=. -++..+...+...++
T Consensus 198 TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 198 TASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp SHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 89999999999999987543 346666666655543
No 128
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=79.39 E-value=0.18 Score=51.43 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCccee-e----------eec---cCCCCChHHHHH
Q 006774 260 TRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI-Q----------ALA---ASGQIPPQTLAA 325 (632)
Q Consensus 260 tre~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i-~----------iL~---KpGkL~~ee~~i 325 (632)
.....-.|..++..++..+ +...+ ....+.+..|..||||||+.+ . ++. ++++|+..|++.
T Consensus 121 ~~~~~~~hs~~va~~a~~l---a~~~~--~~~~e~a~~aGLLHDIGkl~l~~~~p~~~~~~~il~~~~~~~~l~~~E~~~ 195 (297)
T 1vqr_A 121 NTQNFLKTCNEEATFIANW---LNDED--KKLSHLLVPCAMLLRLGIVIFSNFLIQNHKDKDFLAFLNKNENLALAENEF 195 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHH---HTTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH---HHhcc--CCCHHHHHHHHHHHHccHHHHHHHChhhhhHHHHHHHHHcCCCHHHHHHHH
Confidence 3455778888888888888 66654 455677788889999999986 2 343 257788888888
Q ss_pred HH
Q 006774 326 LH 327 (632)
Q Consensus 326 mk 327 (632)
+.
T Consensus 196 ~g 197 (297)
T 1vqr_A 196 LG 197 (297)
T ss_dssp TS
T ss_pred HC
Confidence 73
No 129
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=79.30 E-value=22 Score=35.35 Aligned_cols=111 Identities=15% Similarity=0.067 Sum_probs=73.4
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---EcCHHHHHHHHHHcCCCceEEEEecCCCC-CC-HHHHHHHHh
Q 006774 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (632)
Q Consensus 32 ~glrVLIV----DDd~~ir~~L~~lL~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVILDi~MPd-md-GleLL~~Lr 102 (632)
.+-+||+. |-|..=...+..+|+..||+|.. .-..++.++.+.+.. ||+|.+...+.. +. --++++.++
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~--~d~V~lS~l~~~~~~~~~~~i~~l~ 199 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEK--PIMLTGTALMTTTMYAFKEVNDMLL 199 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHC--CSEEEEECCCTTTTTHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeeccCCHHHHHHHHHHHH
Confidence 34578887 66677788899999999999853 346677777777765 999999987763 44 345777776
Q ss_pred c-cCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Q 006774 103 L-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 103 ~-~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
. .+.+||++--.....+.. -+.|++.|-.. ..+....++.++
T Consensus 200 ~~~~~~~v~vGG~~~~~~~~---~~igad~~~~d---a~~av~~~~~l~ 242 (258)
T 2i2x_B 200 ENGIKIPFACGGGAVNQDFV---SQFALGVYGEE---AADAPKIADAII 242 (258)
T ss_dssp TTTCCCCEEEESTTCCHHHH---HTSTTEEECSS---TTHHHHHHHHHH
T ss_pred hcCCCCcEEEECccCCHHHH---HHcCCeEEECC---HHHHHHHHHHHH
Confidence 4 356777665444444332 36788766543 344445555544
No 130
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=78.72 E-value=19 Score=31.19 Aligned_cols=116 Identities=13% Similarity=0.218 Sum_probs=64.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHH-HHHHHhc-cCCCcEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK-LLEHIGL-EMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGle-LL~~Lr~-~~~iPIII 111 (632)
+-|++..-|......++.+++..||.|.++.+..+.-+.+.+.-..+..-|+=+...+....+ .++.++. ...+-||+
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekairfvkslgaqvliii 82 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIII 82 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEE
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEE
Confidence 345566777778888999999999999999999998877766433343222222222222111 2233332 22333333
Q ss_pred EecCCCH---HHHHHHHhcCCcEEEeCC-CCHHHHHHHHHHHHHhh
Q 006774 112 MSADGRV---SAVMRGIRHGACDYLIKP-IREEELKNIWQHVVRKR 153 (632)
Q Consensus 112 LSa~~d~---e~~~eAl~~GA~DYL~KP-~~~eeL~~~L~~vlr~~ 153 (632)
. .++.. +...+..+.|.. ... -++++++..+.+++|.-
T Consensus 83 y-dqdqnrleefsrevrrrgfe---vrtvtspddfkkslerlirev 124 (134)
T 2l69_A 83 Y-DQDQNRLEEFSREVRRRGFE---VRTVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp E-CSCHHHHHHHHHHHHHTTCC---EEEESSHHHHHHHHHHHHHHH
T ss_pred E-eCchhHHHHHHHHHHhcCce---EEEecChHHHHHHHHHHHHHh
Confidence 3 22211 112233344443 222 46788888888887753
No 131
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=74.83 E-value=21 Score=33.52 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=50.0
Q ss_pred EEEcCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-------mdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
..+.+..++..... . .+|.|+++-..|. ..+++.+++++...++||++..+-. .+.+.++++.|++.+.
T Consensus 113 v~~~t~~e~~~~~~-~--g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 188 (215)
T 1xi3_A 113 ASVYSLEEALEAEK-K--GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIA 188 (215)
T ss_dssp EEESSHHHHHHHHH-H--TCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEE
T ss_pred EecCCHHHHHHHHh-c--CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEE
Confidence 35677877765543 2 3899998864443 3478888888755688988876655 6677788899999885
Q ss_pred e
Q 006774 134 I 134 (632)
Q Consensus 134 ~ 134 (632)
.
T Consensus 189 v 189 (215)
T 1xi3_A 189 V 189 (215)
T ss_dssp E
T ss_pred E
Confidence 4
No 132
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=74.22 E-value=21 Score=34.14 Aligned_cols=70 Identities=20% Similarity=0.191 Sum_probs=50.7
Q ss_pred EEEcCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-------mdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
..+.+.+++.+.... ..|.|+++-..+. .-+++.++.++...++||++..+- +.+.+.++++.|++.+.
T Consensus 115 ~sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~Ga~gv~ 190 (221)
T 1yad_A 115 RSVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAGADGIA 190 (221)
T ss_dssp EEECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTTCSEEE
T ss_pred EEcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 367788887766543 3899999764332 236788888865558899887776 77888899999999875
Q ss_pred e
Q 006774 134 I 134 (632)
Q Consensus 134 ~ 134 (632)
.
T Consensus 191 v 191 (221)
T 1yad_A 191 V 191 (221)
T ss_dssp E
T ss_pred E
Confidence 4
No 133
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=74.06 E-value=16 Score=34.85 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=66.2
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---cCHHHHHHHHHHcCCCceEEEEecCCCC-CC-HHHHHHHHhc
Q 006774 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGL 103 (632)
Q Consensus 33 glrVLIV----DDd~~ir~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVILDi~MPd-md-GleLL~~Lr~ 103 (632)
+-+|++. |-+..-...+..+|+..||+|... ...++.++.+++.. ||+|.+...+.. +. --++++.++.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQ--PDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHC--CSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHh
Confidence 4478887 677788889999999999999753 35667777777665 999999987763 32 3456667764
Q ss_pred c---CCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 104 E---MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 104 ~---~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
. +++||++--...+.+.. -+.|++.|..
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~ 196 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFA---DEIGADGYAP 196 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHH---HHHTCSEECS
T ss_pred cCCCCCCeEEEECCCCCHHHH---HHcCCeEEEC
Confidence 2 34777665444444332 4568887654
No 134
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=73.46 E-value=1.1 Score=45.49 Aligned_cols=62 Identities=11% Similarity=0.041 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCccee---------eeeccCCC--CChHHHHHH
Q 006774 260 TRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI---------QALAASGQ--IPPQTLAAL 326 (632)
Q Consensus 260 tre~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i---------~iL~KpGk--L~~ee~~im 326 (632)
..+..-.|..+++.+++.| |+..|.. ..+.+..+.-||||||+.+ .++.++.. ++..|++++
T Consensus 105 ~~~~~~~hs~~~A~~a~~l---a~~~~~~--~~~~~~~agLLhdiGkl~l~~~~p~~~~~il~~~~~~~l~~~E~~~l 177 (288)
T 3ljx_A 105 DYAAYWQKSLARAVALQSI---TAQASTV--APKEAFTLGLLADVGRLALATAWPEEYSECLRKADGEALIALERERF 177 (288)
T ss_dssp CHHHHHHHHHHHHHHHHHH---HHTSSSS--CHHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH---HHHCCCC--CHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3456888999999999999 9988876 3567778889999999975 34444322 555555555
No 135
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=71.96 E-value=26 Score=34.90 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=52.3
Q ss_pred EEEcCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhcc--CCCcEEEEecCCCHHHHHHHHhcCCcE
Q 006774 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGACD 131 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-------mdGleLL~~Lr~~--~~iPIIILSa~~d~e~~~eAl~~GA~D 131 (632)
.+|.+.+|+.+.... .+|.|.+.-..|. .-|++.+++++.. .++|||.+.+- +.+.+.++++.||++
T Consensus 140 ~S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~g 215 (243)
T 3o63_A 140 RSTHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARR 215 (243)
T ss_dssp EEECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCC
T ss_pred EeCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCE
Confidence 478899888776543 4899998765443 2378888888754 48999999876 566678889999999
Q ss_pred EEe
Q 006774 132 YLI 134 (632)
Q Consensus 132 YL~ 134 (632)
+..
T Consensus 216 vav 218 (243)
T 3o63_A 216 IVV 218 (243)
T ss_dssp EEE
T ss_pred EEE
Confidence 865
No 136
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=70.58 E-value=1.3 Score=44.76 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=37.3
Q ss_pred CcChHHHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCccee
Q 006774 258 GLTRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 258 gltre~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (632)
+......-.|..+++.+++.| |+..|++. +.+..+.-||||||+-+
T Consensus 100 ~~~~~~~~~hs~~~a~~a~~l---a~~~~~~~---~~~~~agLLhdiGkl~l 145 (275)
T 3m1t_A 100 GFDLADFWGNTFEVAIICQEL---AKRLGTLP---EEAFTCGILHSIGELLI 145 (275)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH---HHHHTSCH---HHHHHHHHHTTHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHH---HHHhCCCH---HHHHHHHHHHHccHHHH
Confidence 344567888999999999999 88888753 45677788999999976
No 137
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=70.04 E-value=32 Score=35.11 Aligned_cols=122 Identities=8% Similarity=0.089 Sum_probs=82.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCc
Q 006774 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLP 108 (632)
Q Consensus 30 ~p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr-~~~~iP 108 (632)
+...+.|-+.-.++.....+..+|....|.+..+.+.++.++.++.+++.+|.+|+..- +..-..+..++. ...-+|
T Consensus 6 ~~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g~lLP 83 (289)
T 1r8j_A 6 VLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEGVVVP 83 (289)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTTCCCC
T ss_pred cccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcCcccc
Confidence 34567888888999999999999988889999999999999999988888999998751 224566777775 445689
Q ss_pred EEEEecCCCHHHHHH--HHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 109 VIMMSADGRVSAVMR--GIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 109 IIILSa~~d~e~~~e--Al~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+|++........... .+-+-..+.-...-..+++...|.+++.+.
T Consensus 84 ~vil~~~~~~~~~~~~~~~~yh~aEv~l~~~ql~~l~~~Id~AI~~F 130 (289)
T 1r8j_A 84 AIVVGDRDSEDPDEPAKEQLYHSAELHLGIHQLEQLPYQVDAALAEF 130 (289)
T ss_dssp EEEESCCC------CCSSCSSBTTCEEECTTCGGGHHHHHHHHHHHH
T ss_pred EEEeccCccccCCCCccceeccHHHHcCCHhHHHHHHHHHHHHHHHH
Confidence 998865422000000 011112222333345667777777776554
No 138
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=69.32 E-value=16 Score=35.52 Aligned_cols=97 Identities=14% Similarity=0.038 Sum_probs=66.5
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---cCHHHHHHHHHHcCCCceEEEE--ecCCC-CCC-HHHHHHHH
Q 006774 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLS--DVHMP-DMD-GFKLLEHI 101 (632)
Q Consensus 33 glrVLIV----DDd~~ir~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVIL--Di~MP-dmd-GleLL~~L 101 (632)
.-||++. |-|..=...+..+|+..||+|+.. -..++.++.+.+.+ ||+|.+ ...|. .+. --++++.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~--~d~v~l~~S~l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHK--GEKVLLVGSALMTTSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTT--TSCEEEEEECSSHHHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcC--CCEEEEEchhcccCcHHHHHHHHHHH
Confidence 4578777 667777888999999999998753 35777778888765 999999 87765 233 34566677
Q ss_pred hcc-C--CCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 102 GLE-M--DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 102 r~~-~--~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+.. . ++||++=-.....+. +-+.||+.|-.
T Consensus 170 ~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~ 202 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAE 202 (215)
T ss_dssp HHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCS
T ss_pred HHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEEC
Confidence 543 2 577766544445443 33569988754
No 139
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=68.71 E-value=11 Score=38.29 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHhCCCeEE--EEcCHHHHHHHHHHcCCCceEEEEecCCCCCC-----HHHHHHHHhc-cCC-CcEEE
Q 006774 41 DDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMD-----GFKLLEHIGL-EMD-LPVIM 111 (632)
Q Consensus 41 Dd~~ir~~L~~lL~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MPdmd-----GleLL~~Lr~-~~~-iPIII 111 (632)
|.....+..+.+. +.||.|. +..+...|.++.. .. +++| +.+-.|-.. -.++++.++. ..+ +|||+
T Consensus 109 D~~~tv~aa~~L~-k~Gf~Vlpy~~~D~~~ak~l~~-~G--~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~ 183 (268)
T 2htm_A 109 DPLETLKAAERLI-EEDFLVLPYMGPDLVLAKRLAA-LG--TATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPVVV 183 (268)
T ss_dssp CHHHHHHHHHHHH-HTTCEECCEECSCHHHHHHHHH-HT--CSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEE
T ss_pred CHHHHHHHHHHHH-HCCCEEeeccCCCHHHHHHHHh-cC--CCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeEEE
Confidence 3334444444444 4588876 4456655554443 33 6766 665554222 2567888876 677 99998
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeCC-----CCHHHHHHHHHHHHH
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIKP-----IREEELKNIWQHVVR 151 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP-----~~~eeL~~~L~~vlr 151 (632)
=.+-...+.+..+++.||++.+.=. -++..+...+..++.
T Consensus 184 ~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 184 DAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp ESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 7778889999999999999987543 346666666665554
No 140
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=68.70 E-value=40 Score=35.61 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=66.9
Q ss_pred CCcEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EEcCHHHHHHHHHHcCCCceEEEEecCCCC------------C
Q 006774 32 AGLRVLVVD----DDITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (632)
Q Consensus 32 ~glrVLIVD----Dd~~ir~~L~~lL~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MPd------------m 92 (632)
.+..++++| +.+...+.++.+-+.. +..|. .+.+.++|..+.+. ..|.|.+.+. |+ .
T Consensus 119 aGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a---GAD~I~vG~g-pGs~~~tr~~~g~g~ 194 (366)
T 4fo4_A 119 AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGV 194 (366)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTBCHHHHHCCCC
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc---CCCEEEEecC-CCCCCCcccccCccc
Confidence 345678876 3445555566655554 44443 58899999887764 3798888421 11 2
Q ss_pred CHHHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 93 dGleLL~~Lr---~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
..++++..+. ...++|||.--+-.+...+.+++.+||+....=
T Consensus 195 p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 240 (366)
T 4fo4_A 195 PQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240 (366)
T ss_dssp CHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred chHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3455565553 245799998878778888999999999988654
No 141
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=67.62 E-value=23 Score=40.44 Aligned_cols=116 Identities=11% Similarity=0.095 Sum_probs=74.4
Q ss_pred CcEEEEE----eCCHHHHHH----HHHHHHhCCCeEEE---EcCHHHHHHHHHHcCCCceEEEEecCCCC----CCHH-H
Q 006774 33 GLRVLVV----DDDITCLRI----LEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD----MDGF-K 96 (632)
Q Consensus 33 glrVLIV----DDd~~ir~~----L~~lL~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVILDi~MPd----mdGl-e 96 (632)
..||++. |-+..=... +..+|+..||+|+. .-..++.++.+.+.. +|+|.+...|.. +..+ +
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Eed--ADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELK--ADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCchhhHHHHHH
Confidence 4688887 334333322 24678888999974 346888888888765 999999988875 2332 3
Q ss_pred HHHHHhcc-C--CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 97 LLEHIGLE-M--DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 97 LL~~Lr~~-~--~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
+++.|+.. . .++|++=-.....+. +.+.||+.|........++...|...++.+
T Consensus 680 vIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRREM 736 (763)
T ss_dssp HHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHHh
Confidence 55666532 2 255554333334332 348999988877677777777666665544
No 142
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=66.85 E-value=34 Score=36.68 Aligned_cols=100 Identities=14% Similarity=0.265 Sum_probs=65.7
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhCCCeEE--EEcCHHHHHHHHHHcCCCceEEEEecC-------C----CCCCHH
Q 006774 33 GLRVLVVDD----DITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVH-------M----PDMDGF 95 (632)
Q Consensus 33 glrVLIVDD----d~~ir~~L~~lL~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~-------M----PdmdGl 95 (632)
+..++++|- .....+.++.+-+..+..|. .+.+.++|..+++. ..|.|++... - .+...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccchhHH
Confidence 456777752 23445555555444455554 68889888877653 3898888321 0 012345
Q ss_pred HHHHHHhc---cCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 96 KLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 96 eLL~~Lr~---~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+++..+.. ..++|||.-.+-.+...+.+++.+||+....=
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vG 275 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 66666642 35799998878788899999999999988654
No 143
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=66.79 E-value=63 Score=32.58 Aligned_cols=86 Identities=13% Similarity=-0.011 Sum_probs=58.5
Q ss_pred HHHHHHHHHhCCCeE-EEEcCHHHHHHHHHHcCCCceEEEEecC---CCCCCHHHHHHHHhcc-C-CCcEEEEecCCCHH
Q 006774 46 LRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH---MPDMDGFKLLEHIGLE-M-DLPVIMMSADGRVS 119 (632)
Q Consensus 46 r~~L~~lL~~~gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~---MPdmdGleLL~~Lr~~-~-~iPIIILSa~~d~e 119 (632)
...+.......|..+ ..+.+.+++...+.. .+|+|-+.-. ... -+++.+++|... + ++|+|..++-.+.+
T Consensus 151 l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~-~dl~~~~~l~~~v~~~~pvVaegGI~t~e 226 (272)
T 3qja_A 151 LVSMLDRTESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLD-VDRDCFARIAPGLPSSVIRIAESGVRGTA 226 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCC-BCTTHHHHHGGGSCTTSEEEEESCCCSHH
T ss_pred HHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCcccccc-cCHHHHHHHHHhCcccCEEEEECCCCCHH
Confidence 334445555667765 467888887666643 3788877632 111 135566666533 3 68999988888899
Q ss_pred HHHHHHhcCCcEEEeC
Q 006774 120 AVMRGIRHGACDYLIK 135 (632)
Q Consensus 120 ~~~eAl~~GA~DYL~K 135 (632)
.+.++.++|+++++.=
T Consensus 227 dv~~l~~~GadgvlVG 242 (272)
T 3qja_A 227 DLLAYAGAGADAVLVG 242 (272)
T ss_dssp HHHHHHHTTCSEEEEC
T ss_pred HHHHHHHcCCCEEEEc
Confidence 9999999999999874
No 144
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=66.04 E-value=15 Score=35.84 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=38.6
Q ss_pred HHHHHHHHhccCCCcEEEEecCCC------HHHHHHHHhcCCcEEEeCCCCHHHHHHHHH
Q 006774 94 GFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (632)
Q Consensus 94 GleLL~~Lr~~~~iPIIILSa~~d------~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~ 147 (632)
++++++.++...++||++++.... .+.+..+++.||+..+.-....++....++
T Consensus 68 ~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~ 127 (248)
T 1geq_A 68 AFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTE 127 (248)
T ss_dssp HHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHH
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHH
Confidence 377888888766789988874332 467778889999999886666665544433
No 145
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=65.92 E-value=56 Score=31.12 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=41.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEE
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLS 85 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVIL 85 (632)
+...+|+++-..+...+.++.++.+...++. ...+.+++++..++....+|+||.
T Consensus 2 ~~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIIS 57 (196)
T 2q5c_A 2 SLSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIIS 57 (196)
T ss_dssp CCCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEE
T ss_pred CCCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEE
Confidence 3456899999999999999998887655554 456788888877663235898886
No 146
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=64.86 E-value=71 Score=32.28 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=73.3
Q ss_pred CcEEEEE----eCCHHHHHHHHHH--------HHhC-CCeEEE---EcCHHHHHHHHHHcCCCceEEEEecCCCCCC-H-
Q 006774 33 GLRVLVV----DDDITCLRILEQM--------LRRC-LYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDMD-G- 94 (632)
Q Consensus 33 glrVLIV----DDd~~ir~~L~~l--------L~~~-gy~V~~---a~sg~eALe~L~e~~~~pDLVILDi~MPdmd-G- 94 (632)
..+|++. |-|..=...+..+ |+.. ||+|+. .-..++.++.+.+.. +|+|.+...+...+ .
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~--~d~VglS~l~t~~~~~~ 197 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELE--ADVLLVSQTVTQKNVHI 197 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCTTSHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeecCCccchH
Confidence 4567665 5556666667767 8888 999864 446778888888765 99999999887522 2
Q ss_pred ---HHHHHHHhcc---CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 95 ---FKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 95 ---leLL~~Lr~~---~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
-++++.++.. .+++|++=-...+. ..+.+.|++.|..--....++...+...++
T Consensus 198 ~~~~~~i~~L~~~g~~~~i~vivGG~~~~~---~~a~~iGad~~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 198 QNMTHLIELLEAEGLRDRFVLLCGGPRINN---EIAKELGYDAGFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp HHHHHHHHHHHHTTCGGGSEEEEECTTCCH---HHHHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCcCCH---HHHHHcCCeEEECCchHHHHHHHHHHHHHH
Confidence 2355566532 23555443333333 235678999888666777777666655443
No 147
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=63.88 E-value=19 Score=35.92 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=48.2
Q ss_pred CceEEEEecCCCC--CC--------------------HHHHHHHHhccC-CCcEEEEecCCC------HHHHHHHHhcCC
Q 006774 79 CFDVVLSDVHMPD--MD--------------------GFKLLEHIGLEM-DLPVIMMSADGR------VSAVMRGIRHGA 129 (632)
Q Consensus 79 ~pDLVILDi~MPd--md--------------------GleLL~~Lr~~~-~iPIIILSa~~d------~e~~~eAl~~GA 129 (632)
..|+|.+++-..+ .| .+++++.+|... ++|+++++-... ......+.++|+
T Consensus 44 G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~ 123 (262)
T 2ekc_A 44 GTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGI 123 (262)
T ss_dssp TCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCC
Confidence 4898888764432 22 346677777655 899999853321 344566789999
Q ss_pred cEEEeCCCCHHHHHHHHHHH
Q 006774 130 CDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 130 ~DYL~KP~~~eeL~~~L~~v 149 (632)
++++.-.+..+++...+..+
T Consensus 124 dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 124 DGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp CEEECTTCCHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHH
Confidence 99999778888776655544
No 148
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=63.09 E-value=36 Score=39.34 Aligned_cols=117 Identities=12% Similarity=-0.002 Sum_probs=75.6
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---cCHHHHHHHHHHcCCCceEEEEecCCCC-C-CHHHHHHHHhc
Q 006774 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIGL 103 (632)
Q Consensus 33 glrVLIV----DDd~~ir~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVILDi~MPd-m-dGleLL~~Lr~ 103 (632)
..||++. |.|..=...+..+|+..||+|..- .+.++.++...+.. +|+|.+...|.. + ..-++++.|+.
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHhHHHHHHHHHHHHHh
Confidence 4577775 444555667777888889999753 35788888887765 999999887653 2 23456667754
Q ss_pred c-C-CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 104 E-M-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 104 ~-~-~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
. . +++ |++-+-.-......+.+.|++.|+.--.+..++...+...++.
T Consensus 674 ~G~~~i~-VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 674 LGRPDIL-ITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp TTCTTSE-EEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCE-EEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHH
Confidence 2 2 443 3444322222334467899999988656777777666665544
No 149
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=62.96 E-value=66 Score=37.39 Aligned_cols=118 Identities=10% Similarity=-0.021 Sum_probs=76.7
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---cCHHHHHHHHHHcCCCceEEEEecCCCC-C-CHHHHHHHHhc
Q 006774 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIGL 103 (632)
Q Consensus 33 glrVLIV----DDd~~ir~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVILDi~MPd-m-dGleLL~~Lr~ 103 (632)
..||++. |.+..=...+..+|+..||+|+.- .+.++.++...+.. +|+|.+...|.. + ..-++++.|+.
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDAD--VHAVGVSTLAAGHKTLVPELIKELNS 681 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHHHHHHHHHHHHHHHh
Confidence 4577775 344455567778888999999753 35788888887765 999999877653 2 23456666753
Q ss_pred c-C-CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Q 006774 104 E-M-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 104 ~-~-~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~~ 153 (632)
. . +++ |++-+-.-......+.+.|+++|+..--+..+....+...++.+
T Consensus 682 ~G~~dv~-VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~ 732 (762)
T 2xij_A 682 LGRPDIL-VMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKC 732 (762)
T ss_dssp TTCTTSE-EEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCE-EEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHH
Confidence 2 2 443 33443122222344578999999985568888877777776544
No 150
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=62.45 E-value=63 Score=30.34 Aligned_cols=99 Identities=9% Similarity=-0.011 Sum_probs=57.4
Q ss_pred CcEEEEEeCCH--HHHHHHHHHHHhCCCeEEE----EcCHHHHHHHHHHcCCCceEEEEecCCC----CCCHHHHHHHHh
Q 006774 33 GLRVLVVDDDI--TCLRILEQMLRRCLYNVTT----CSQAAVALDILRERKGCFDVVLSDVHMP----DMDGFKLLEHIG 102 (632)
Q Consensus 33 glrVLIVDDd~--~ir~~L~~lL~~~gy~V~~----a~sg~eALe~L~e~~~~pDLVILDi~MP----dmdGleLL~~Lr 102 (632)
|...+++-+.+ .....+.+.+++.+..+.. ..+..+.++.+.+.. .|.|.++.... ...+++.+++++
T Consensus 77 Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g--~d~i~v~~g~~g~~~~~~~~~~i~~l~ 154 (211)
T 3f4w_A 77 GADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAG--ADMLAVHTGTDQQAAGRKPIDDLITML 154 (211)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHT--CCEEEEECCHHHHHTTCCSHHHHHHHH
T ss_pred CCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcC--CCEEEEcCCCcccccCCCCHHHHHHHH
Confidence 33445555543 3334455556666666553 234434334443333 78877762110 113577888887
Q ss_pred cc-CCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 103 LE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 103 ~~-~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
.. +++||++-.+- ..+.+.++++.||+.++.
T Consensus 155 ~~~~~~~i~~~gGI-~~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 155 KVRRKARIAVAGGI-SSQTVKDYALLGPDVVIV 186 (211)
T ss_dssp HHCSSCEEEEESSC-CTTTHHHHHTTCCSEEEE
T ss_pred HHcCCCcEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 55 47888776555 367788889999998765
No 151
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=62.05 E-value=37 Score=33.88 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCCeEE--EEcCHHHHHHHHHHcCCCceEEEE-ecCCC---CCCHHHHHHHHhccCCCcEEEEecCCC
Q 006774 44 TCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLS-DVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGR 117 (632)
Q Consensus 44 ~ir~~L~~lL~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVIL-Di~MP---dmdGleLL~~Lr~~~~iPIIILSa~~d 117 (632)
...+..++.+.. ++.+. ++.+.+++...... . .|.|+. -.... +..+.+++++++...++|||+..+-.+
T Consensus 114 ~~~~~a~~~~~~-g~~vi~~~~~~~~~a~~~~~~-g--ad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t 189 (264)
T 1xm3_A 114 ETLKASEQLLEE-GFIVLPYTSDDVVLARKLEEL-G--VHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGS 189 (264)
T ss_dssp HHHHHHHHHHHT-TCCEEEEECSCHHHHHHHHHH-T--CSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCS
T ss_pred HHHHHHHHHHCC-CeEEEEEcCCCHHHHHHHHHh-C--CCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCC
Confidence 344444444432 55544 55566666555443 2 566632 00001 123478888887777899999988888
Q ss_pred HHHHHHHHhcCCcEEEeC
Q 006774 118 VSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 118 ~e~~~eAl~~GA~DYL~K 135 (632)
.+.+.+++++||+.++.=
T Consensus 190 ~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 190 PKDAAYAMELGADGVLLN 207 (264)
T ss_dssp HHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 899999999999998764
No 152
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=61.90 E-value=44 Score=31.73 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=46.1
Q ss_pred EEcCHHHHHHHHHHcCCCceEEEEecCCC--------CCCHHHHHHHHhccCC-CcEEEEecCCCHHHHHHHHhcCCcEE
Q 006774 62 TCSQAAVALDILRERKGCFDVVLSDVHMP--------DMDGFKLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi~MP--------dmdGleLL~~Lr~~~~-iPIIILSa~~d~e~~~eAl~~GA~DY 132 (632)
.+.+..++..... . .+|.|++....+ ...+++.+++++.... +||++..+-. .+.+.++++.|++.+
T Consensus 122 s~~t~~e~~~a~~-~--g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv 197 (227)
T 2tps_A 122 SAHTMSEVKQAEE-D--GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGV 197 (227)
T ss_dssp EECSHHHHHHHHH-H--TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEE
T ss_pred ecCCHHHHHHHHh-C--CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEE
Confidence 4577777655543 2 389988632222 1236888888875555 8988876655 666777888999987
Q ss_pred Ee
Q 006774 133 LI 134 (632)
Q Consensus 133 L~ 134 (632)
..
T Consensus 198 ~v 199 (227)
T 2tps_A 198 SM 199 (227)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 153
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=61.65 E-value=19 Score=36.03 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=48.9
Q ss_pred CceEEEEecCCC--CCC--------------------HHHHHHHHhcc-CCCcEEEEecCC------CHHHHHHHHhcCC
Q 006774 79 CFDVVLSDVHMP--DMD--------------------GFKLLEHIGLE-MDLPVIMMSADG------RVSAVMRGIRHGA 129 (632)
Q Consensus 79 ~pDLVILDi~MP--dmd--------------------GleLL~~Lr~~-~~iPIIILSa~~------d~e~~~eAl~~GA 129 (632)
..|+|-+|+-.. -+| ++++++.+|.. .++||++++-.. ....+..+.++|+
T Consensus 44 GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGa 123 (268)
T 1qop_A 44 GADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGV 123 (268)
T ss_dssp TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCC
Confidence 488888887432 233 34667788766 789998875222 1456677889999
Q ss_pred cEEEeCCCCHHHHHHHHHHH
Q 006774 130 CDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 130 ~DYL~KP~~~eeL~~~L~~v 149 (632)
++++.-.+..+++...++.+
T Consensus 124 dgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 124 DSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp CEEEETTCCGGGCHHHHHHH
T ss_pred CEEEEcCCCHHHHHHHHHHH
Confidence 99998778877766655544
No 154
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=60.13 E-value=2.5 Score=41.02 Aligned_cols=39 Identities=10% Similarity=-0.024 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCc
Q 006774 262 ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGR 306 (632)
Q Consensus 262 e~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGK 306 (632)
...-.|+.||..++..| +...|. ..+.+..|+.|||||+
T Consensus 32 ~h~~~H~~rV~~~a~~l---a~~~~~---d~~~l~~AaLLHDIg~ 70 (220)
T 2pq7_A 32 AHDISHTFRVMENASEI---ASREKC---DLQKAIIAALLHDIKR 70 (220)
T ss_dssp TTSHHHHHHHHHHHHHH---HHHHTC---CHHHHHHHHHHTTTTH
T ss_pred chhHHHHHHHHHHHHHH---HHHcCC---CHHHHHHHHHHHcCCC
Confidence 34679999999999999 877774 3456788999999976
No 155
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=60.11 E-value=44 Score=35.15 Aligned_cols=100 Identities=14% Similarity=0.263 Sum_probs=63.8
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EEcCHHHHHHHHHHcCCCceEEEEecCCC-----------CCCHH
Q 006774 33 GLRVLVVD----DDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMDGF 95 (632)
Q Consensus 33 glrVLIVD----Dd~~ir~~L~~lL~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MP-----------dmdGl 95 (632)
+..++++| +...+.+.++.+-+..+..|. .+.+.++|..+++. ..|.|.+-+.-. +...+
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~~Gs~~~tr~~~g~g~p~~ 193 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 193 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSSCCTTCCHHHHTCBCCCHH
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecCCCcCCCcccccCCCCCcH
Confidence 44566664 233445566655555455544 67888888776653 378888732110 12345
Q ss_pred HHHHHHh---ccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 96 KLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 96 eLL~~Lr---~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+++..+. ...++|||.--+-.+...+.+++.+||+....=
T Consensus 194 ~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 236 (361)
T 3khj_A 194 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236 (361)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 5555553 234799998877778888999999999988654
No 156
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=59.45 E-value=65 Score=32.21 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=63.5
Q ss_pred HHHHHHhCCCeEE--EEc-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEEEecCCCHHHHHH
Q 006774 49 LEQMLRRCLYNVT--TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR 123 (632)
Q Consensus 49 L~~lL~~~gy~V~--~a~-sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~--~~~iPIIILSa~~d~e~~~e 123 (632)
+++.|......+. ... +..+.++.+... .+|.||+|+.=...+.-.+...++. ....++++.....+...+..
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~~--g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~ 83 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAEA--GLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQR 83 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHHT--TCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhcC--CcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 4556655333332 222 334555655554 4999999987665555555555532 23567788777778888889
Q ss_pred HHhcCCcEEEe-CCCCHHHHHHHHHHH
Q 006774 124 GIRHGACDYLI-KPIREEELKNIWQHV 149 (632)
Q Consensus 124 Al~~GA~DYL~-KP~~~eeL~~~L~~v 149 (632)
+++.|++..+. |--+.+++..+++.+
T Consensus 84 ~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 84 LLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 99999987654 445788887776654
No 157
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=58.01 E-value=1.9 Score=42.54 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCcc
Q 006774 263 NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 263 ~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
..-.|+.||..++..| +...|.+ .+.+..|+.||||||.
T Consensus 30 H~~~H~~rV~~~a~~i---a~~~~~d---~~ll~lAAlLHDigk~ 68 (231)
T 2pjq_A 30 HGRDHLQRVNRLARRL---AKDEGAN---LNLTLAAAWLHDVIDD 68 (231)
T ss_dssp CSHHHHHHHHHHHHHH---HHHHTCC---HHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHHH---HHHcCCC---HHHHHHHHHHHcCCcc
Confidence 4568999999999999 7766653 4677889999999984
No 158
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=57.97 E-value=3.6 Score=43.75 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCcce
Q 006774 265 ASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFD 308 (632)
Q Consensus 265 aSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~ 308 (632)
-.|..+|...++.+ +...|++.. +.+..|+-|||||+.-
T Consensus 52 ~~Hsl~V~~~a~~i---a~~~~~~~~--~~~~~AaLLHDiG~~p 90 (371)
T 2hek_A 52 FEHSLGVYHITERI---CESLKVKEK--ELVKLAGLLHDLGHPP 90 (371)
T ss_dssp HHHHHHHHHHHHHH---HHHHTCTTH--HHHHHHHHTTTTTCCS
T ss_pred hHHHHHHHHHHHHH---HHHcCCCHH--HHHHHHHHHHhcCccc
Confidence 47999999999999 888898775 6677889999999975
No 159
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=57.67 E-value=99 Score=31.35 Aligned_cols=98 Identities=10% Similarity=0.082 Sum_probs=60.8
Q ss_pred HHHHHHhCCCeEE--EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEecCCCHHHHHHH
Q 006774 49 LEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (632)
Q Consensus 49 L~~lL~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr--~~~~iPIIILSa~~d~e~~~eA 124 (632)
+++.|+.-...+. .-.+..+.++.+... .+|.|++|+.=...+--++...++ .....++++.+...+...+..+
T Consensus 30 ~k~~l~~G~~~~gl~~~~~~p~~~e~a~~~--GaD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~~ 107 (287)
T 2v5j_A 30 FKAALKAGRPQIGLWLGLSSSYSAELLAGA--GFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQL 107 (287)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHTS--CCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCcEEEEEEECCCHHHHHHHHhC--CCCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHH
Confidence 5566665322332 223334445555543 499999998554444444444443 2236788999988888888899
Q ss_pred HhcCCcEEEe-CCCCHHHHHHHHHH
Q 006774 125 IRHGACDYLI-KPIREEELKNIWQH 148 (632)
Q Consensus 125 l~~GA~DYL~-KP~~~eeL~~~L~~ 148 (632)
++.|++..+. |--+.++++.+++.
T Consensus 108 ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 108 LDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred HhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999986544 33578887666553
No 160
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=56.50 E-value=51 Score=30.77 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=57.7
Q ss_pred HHHHHHHcCC-----CCCCCcccccccCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEEcCHHHHHHHHHH
Q 006774 4 LQRIVQSSGG-----SGYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRE 75 (632)
Q Consensus 4 ~~~lv~~~GG-----~G~gs~~~~~~~~p~~~p~glrVLIVDDd~~ir~~L~~lL~~~gy--~V-~~a~sg~eALe~L~e 75 (632)
+..++....+ .|.|.+..... +....+.+.+|..||-++...+..+..+...+. .+ ....+..+.+..+..
T Consensus 50 l~~l~~~~~~~~vLdiG~G~G~~~~~-la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 128 (223)
T 3duw_A 50 LQLLVQIQGARNILEIGTLGGYSTIW-LARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIEN 128 (223)
T ss_dssp HHHHHHHHTCSEEEEECCTTSHHHHH-HHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHH
T ss_pred HHHHHHhhCCCEEEEecCCccHHHHH-HHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh
Confidence 3444444454 35555443222 122334456999999999999999998887654 23 356777776665543
Q ss_pred cC-CCceEEEEecCCCCCCHHHHHHHH
Q 006774 76 RK-GCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 76 ~~-~~pDLVILDi~MPdmdGleLL~~L 101 (632)
.. ..||+|++|...+ .-.++++.+
T Consensus 129 ~~~~~fD~v~~d~~~~--~~~~~l~~~ 153 (223)
T 3duw_A 129 EKYEPFDFIFIDADKQ--NNPAYFEWA 153 (223)
T ss_dssp TTCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred cCCCCcCEEEEcCCcH--HHHHHHHHH
Confidence 21 3599999996532 234455555
No 161
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=55.89 E-value=3.7 Score=39.70 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCcce
Q 006774 263 NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFD 308 (632)
Q Consensus 263 ~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~ 308 (632)
..-.|+.||...+..| +...|.+ .+.+..|+-|||||+..
T Consensus 25 H~~~H~~rV~~~a~~i---a~~~~~d---~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 25 HDWSHIKRVWKLSKEI---QSKEGGD---LFTIELAALFHDYSDIK 64 (209)
T ss_dssp CCHHHHHHHHHHHHHH---HHHHCSC---HHHHHHHHHHTTCCC--
T ss_pred cCHHHHHHHHHHHHHH---HHHcCCC---HHHHHHHHHHhccCccc
Confidence 4578999999999999 7766653 46778889999999973
No 162
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=55.14 E-value=4.1 Score=40.69 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCcc
Q 006774 264 VASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 264 taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
.-.|+.||...+..| +...|. ..+.+..|+-||||||.
T Consensus 26 ~~~H~~rV~~~a~~i---a~~~~~---d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 26 DVCHFRRVWATAQKL---AADDDV---DMLVILTACYFHDIVSL 63 (239)
T ss_dssp -CCHHHHHHHHHHHH---TTTSCS---CTTHHHHHHHHTTTTC-
T ss_pred cHHHHHHHHHHHHHH---HHHcCC---CHHHHHHHHHHhhcccc
Confidence 457999999999999 776663 35678889999999996
No 163
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=55.08 E-value=3.7 Score=40.53 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCcc
Q 006774 263 NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 263 ~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
..-.|+.||...+..| +...|.+ .+.+..|+-|||||+.
T Consensus 25 H~~~H~~rV~~~a~~i---a~~~~~d---~~~l~~AalLHDig~~ 63 (223)
T 3dto_A 25 HDWYHIRRVTLMAKAI---GEQEKVD---VFVVQIAALFHDLIDD 63 (223)
T ss_dssp -CHHHHHHHHHHHHHH---HHHTTCC---HHHHHHHHHHHSTTC-
T ss_pred CcHHHHHHHHHHHHHH---HHHcCCC---HHHHHHHHHHhhcccc
Confidence 4678999999999999 7766654 4677889999999996
No 164
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=54.08 E-value=25 Score=32.27 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=32.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh--CCCeEEEEcCHHHHHHHHHHcCCCceEEEEec
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRR--CLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~--~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi 87 (632)
.+.||++||-|+.. .+..++.. .++.+..+.. ....+.+......+|+||+|.
T Consensus 29 ~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~ 83 (206)
T 4dzz_A 29 SGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDG 83 (206)
T ss_dssp TTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEEC
T ss_pred CCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEEC
Confidence 46799999988643 23344432 2466666554 333344444334599999996
No 165
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=53.87 E-value=1.3e+02 Score=29.82 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=59.5
Q ss_pred HHHHHHhCC--CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEecCCCHHHHHHH
Q 006774 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (632)
Q Consensus 49 L~~lL~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr--~~~~iPIIILSa~~d~e~~~eA 124 (632)
+++.|..-. +.+.......+.++.+... .+|.|++|+.=.-.+--++...++ .....++++.+...+...+..+
T Consensus 9 ~k~~l~~g~~~~g~~~~~~~p~~~e~a~~~--GaD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~~ 86 (267)
T 2vws_A 9 FKERLRKGEVQIGLWLSSTTAYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQV 86 (267)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHTT--CCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Confidence 555665422 2222233344445555543 499999998544344444444443 2235778888887788888889
Q ss_pred HhcCCcEEEe-CCCCHHHHHHHHHH
Q 006774 125 IRHGACDYLI-KPIREEELKNIWQH 148 (632)
Q Consensus 125 l~~GA~DYL~-KP~~~eeL~~~L~~ 148 (632)
++.|++..+. |--+.++++.+++.
T Consensus 87 l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 87 LDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp HHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred HHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999986543 33578887666554
No 166
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=52.72 E-value=1.1e+02 Score=31.03 Aligned_cols=80 Identities=21% Similarity=0.218 Sum_probs=55.5
Q ss_pred HHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHH
Q 006774 53 LRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRG 124 (632)
Q Consensus 53 L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPd-------mdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eA 124 (632)
++..+..+. .+.+.+++...... ..|.|+++-.-++ ...++++++++...++|||+-.+-.+.+.+.++
T Consensus 114 l~~~gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~a 190 (328)
T 2gjl_A 114 FRRHGVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAA 190 (328)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHH
T ss_pred HHHcCCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 333354443 46777777665542 3798888632221 256788888876668999988887788888999
Q ss_pred HhcCCcEEEeC
Q 006774 125 IRHGACDYLIK 135 (632)
Q Consensus 125 l~~GA~DYL~K 135 (632)
+..||+....=
T Consensus 191 l~~GAdgV~vG 201 (328)
T 2gjl_A 191 LALGADAINMG 201 (328)
T ss_dssp HHHTCSEEEES
T ss_pred HHcCCCEEEEC
Confidence 99999987653
No 167
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=52.61 E-value=35 Score=29.54 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=25.7
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHH
Q 006774 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE 75 (632)
Q Consensus 37 LIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e 75 (632)
|+-|.|..-.+.+++-++..||+|..+++.++|+.+.++
T Consensus 81 llqdqdeneleefkrkiesqgyevrkvtddeealkivre 119 (134)
T 2lci_A 81 LLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVRE 119 (134)
T ss_dssp EEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHH
T ss_pred EeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHH
Confidence 444555555666666666667777777777777776654
No 168
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=52.12 E-value=1.1e+02 Score=33.63 Aligned_cols=101 Identities=12% Similarity=0.178 Sum_probs=65.5
Q ss_pred CCcEEEEEeC----CHHHHHHHHHHHHhCC-CeE--EEEcCHHHHHHHHHHcCCCceEEEEecCCCC-----------CC
Q 006774 32 AGLRVLVVDD----DITCLRILEQMLRRCL-YNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD-----------MD 93 (632)
Q Consensus 32 ~glrVLIVDD----d~~ir~~L~~lL~~~g-y~V--~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-----------md 93 (632)
.+..++++|. ...+.+.++.+-+.++ ..+ ..+.+.+.|..+... ..|.|.+.+.-.. ..
T Consensus 267 aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p 343 (511)
T 3usb_A 267 ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVP 343 (511)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCC
T ss_pred hccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCC
Confidence 3567888873 3344455555555543 333 367788888777664 3788887432211 22
Q ss_pred HHHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 94 GFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 94 GleLL~~Lr---~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
.++++..+. ....+|||.-.+-.+...+.+|+.+||+..+.=
T Consensus 344 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 344 QLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred cHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 345554442 334799998888888999999999999998764
No 169
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=51.88 E-value=1.1e+02 Score=26.59 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=48.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHc--CCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRER--KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~--~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPII 110 (632)
.+||.||.| +..... ++-.|.++..+.+.+++.+.+++. ..++.+|++.-++.+ .--+.+++++.....|+|
T Consensus 3 ~mkiaVIgD-~dtv~G----FrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~-~i~~~i~~~~~~~~~P~I 76 (109)
T 2d00_A 3 PVRMAVIAD-PETAQG----FRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLP-DPERAVERLMRGRDLPVL 76 (109)
T ss_dssp CCCEEEEEC-HHHHHH----HHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCS-CHHHHHHHHTTCCCCCEE
T ss_pred ccEEEEEeC-HHHHHH----HHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHH-hhHHHHHHHHhCCCCeEE
Confidence 478999999 333322 223477888888888776655431 235899999977655 334556666545668877
Q ss_pred EEec
Q 006774 111 MMSA 114 (632)
Q Consensus 111 ILSa 114 (632)
+.-.
T Consensus 77 l~IP 80 (109)
T 2d00_A 77 LPIA 80 (109)
T ss_dssp EEES
T ss_pred EEEC
Confidence 7543
No 170
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=50.99 E-value=65 Score=32.34 Aligned_cols=107 Identities=14% Similarity=0.129 Sum_probs=62.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEE--EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPII 110 (632)
.++++|+.+.+. ..++..++...-.|. -.-+..+..+++.. .|++|+-..-.+.-|..+++.+. ..+|||
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a--~G~PvI 311 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMA--AGTAVV 311 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHH--HTCEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHH--cCCCEE
Confidence 356666666554 444444443211222 22233444555543 46766642212333556666663 356776
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.. +.....+.+..|..+++..|-+.++|..++..++.
T Consensus 312 ~~----~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 312 AS----DLDAFRRVLADGDAGRLVPVDDADGMAAALIGILE 348 (406)
T ss_dssp EC----CCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHH
T ss_pred Ee----cCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHc
Confidence 53 22345677788889999999999999999988875
No 171
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=49.70 E-value=98 Score=31.72 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=38.8
Q ss_pred HHHHHHHhccCCCcEEE--EecCCCHHHHHHHHhcCCcEEEe-----CCCCHHHHHHHHHHHHHh
Q 006774 95 FKLLEHIGLEMDLPVIM--MSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (632)
Q Consensus 95 leLL~~Lr~~~~iPIII--LSa~~d~e~~~eAl~~GA~DYL~-----KP~~~eeL~~~L~~vlr~ 152 (632)
++++++++....+|||+ -.+-.+.+.+.+++++||+.++. |.-++.+....+...+..
T Consensus 196 ~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~ 260 (297)
T 4adt_A 196 IDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSN 260 (297)
T ss_dssp HHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHh
Confidence 56777776556788774 44455788899999999999875 334555555545444443
No 172
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=48.94 E-value=2.2e+02 Score=29.87 Aligned_cols=99 Identities=11% Similarity=0.062 Sum_probs=60.7
Q ss_pred CCcEEEEEeC----CHHHHHHHHHHHHhC-CCeEE--EEcCHHHHHHHHHHcCCCceEEEEecCCCC------------C
Q 006774 32 AGLRVLVVDD----DITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (632)
Q Consensus 32 ~glrVLIVDD----d~~ir~~L~~lL~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MPd------------m 92 (632)
.+..++.+|- .....+.++.+-+.. +..|. .+.+.++|..+.+. ..|.|.+... |+ .
T Consensus 111 aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~ 186 (361)
T 3r2g_A 111 AGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGV 186 (361)
T ss_dssp TTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCC
T ss_pred cCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccH
Confidence 3566888872 233333443333322 44444 47888888877653 3899888543 22 1
Q ss_pred CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 93 DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 93 dGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
..++.+..+..... |||.-.+-.+...+.+++.+||+....=
T Consensus 187 p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~iG 228 (361)
T 3r2g_A 187 PMLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMIG 228 (361)
T ss_dssp CHHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 23444444432222 8888777778899999999999887653
No 173
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=48.65 E-value=4.2 Score=40.11 Aligned_cols=39 Identities=21% Similarity=0.104 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCcc
Q 006774 263 NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 263 ~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
.--.|+.||...+..| +...|.+ .+.+..|+-|||||+.
T Consensus 25 H~~~H~~rV~~~a~~i---a~~~~~d---~~~l~~AAlLHDig~~ 63 (223)
T 3djb_A 25 HDWYHIRRVHKMAISL---SEQEGGN---RFIIEMAALLHDVADE 63 (223)
T ss_dssp TTHHHHHHHHHHHHHH---HTTTCSC---HHHHHHHHTTHHHHC-
T ss_pred CcHHHHHHHHHHHHHH---HHHcCCC---HHHHHHHHHHhhcccc
Confidence 4578999999999999 7665543 5678889999999995
No 174
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=48.60 E-value=1.1e+02 Score=29.77 Aligned_cols=94 Identities=11% Similarity=0.153 Sum_probs=57.0
Q ss_pred HHHHHHcCC-----CCCCCcccccccCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEEcCHHHHHHHHHHc
Q 006774 5 QRIVQSSGG-----SGYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRER 76 (632)
Q Consensus 5 ~~lv~~~GG-----~G~gs~~~~~~~~p~~~p~glrVLIVDDd~~ir~~L~~lL~~~gy--~V-~~a~sg~eALe~L~e~ 76 (632)
..++...++ .|.|.++.... +....+.+.+|..||-++...+..+..+...++ .+ ....++.+.+..+...
T Consensus 72 ~~l~~~~~~~~VLeiG~G~G~~~~~-la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~ 150 (247)
T 1sui_A 72 SMLLKLINAKNTMEIGVYTGYSLLA-TALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKD 150 (247)
T ss_dssp HHHHHHTTCCEEEEECCGGGHHHHH-HHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHS
T ss_pred HHHHHhhCcCEEEEeCCCcCHHHHH-HHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhc
Confidence 445555554 35555543222 111223356899999999999999999887765 24 3566777766554321
Q ss_pred ---CCCceEEEEecCCCCCCHHHHHHHH
Q 006774 77 ---KGCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 77 ---~~~pDLVILDi~MPdmdGleLL~~L 101 (632)
...||+|++|.... +-..+++.+
T Consensus 151 ~~~~~~fD~V~~d~~~~--~~~~~l~~~ 176 (247)
T 1sui_A 151 EKNHGSYDFIFVDADKD--NYLNYHKRL 176 (247)
T ss_dssp GGGTTCBSEEEECSCST--THHHHHHHH
T ss_pred cCCCCCEEEEEEcCchH--HHHHHHHHH
Confidence 23599999996532 344555555
No 175
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=47.69 E-value=53 Score=32.58 Aligned_cols=90 Identities=8% Similarity=0.020 Sum_probs=55.0
Q ss_pred HHHHhCC-CeEEEEcCHHHHHHHHHHc-CCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhc
Q 006774 51 QMLRRCL-YNVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRH 127 (632)
Q Consensus 51 ~lL~~~g-y~V~~a~sg~eALe~L~e~-~~~pDLVILDi~MPdmdGleLL~~Lr~~-~~iPIIILSa~~d~e~~~eAl~~ 127 (632)
+.|...+ .-|....+.+++.++.+.. ....++|=+ .+-..++++.++.++.. ++ .+|-...--+.+.+..++++
T Consensus 29 ~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEv--t~~t~~a~e~I~~l~~~~~~-~~iGaGTVlt~~~a~~Ai~A 105 (232)
T 4e38_A 29 NQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEI--TFRSDAAVEAIRLLRQAQPE-MLIGAGTILNGEQALAAKEA 105 (232)
T ss_dssp HHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEE--ETTSTTHHHHHHHHHHHCTT-CEEEEECCCSHHHHHHHHHH
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEE--eCCCCCHHHHHHHHHHhCCC-CEEeECCcCCHHHHHHHHHc
Confidence 3444434 4566677777777665532 123555544 44455789999999754 44 34434445568889999999
Q ss_pred CCcEEEeCCCCHHHHHH
Q 006774 128 GACDYLIKPIREEELKN 144 (632)
Q Consensus 128 GA~DYL~KP~~~eeL~~ 144 (632)
||+ |+.-|-...++.+
T Consensus 106 GA~-fIvsP~~~~~vi~ 121 (232)
T 4e38_A 106 GAT-FVVSPGFNPNTVR 121 (232)
T ss_dssp TCS-EEECSSCCHHHHH
T ss_pred CCC-EEEeCCCCHHHHH
Confidence 997 6666744444443
No 176
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=47.55 E-value=1.1e+02 Score=31.26 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=56.2
Q ss_pred HHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCC-----CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHh
Q 006774 53 LRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR 126 (632)
Q Consensus 53 L~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MP-----dmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~ 126 (632)
++..+..+. .+.+.++|....+. .+|.|+++-.-. ....++++..++...++|||+-.+-.+.+.+.+++.
T Consensus 120 l~~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~ 196 (326)
T 3bo9_A 120 LKENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFA 196 (326)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH
Confidence 334455444 46777777665542 378888864221 134678888887656899998888888889999999
Q ss_pred cCCcEEEeC
Q 006774 127 HGACDYLIK 135 (632)
Q Consensus 127 ~GA~DYL~K 135 (632)
.||+....=
T Consensus 197 ~GA~gV~vG 205 (326)
T 3bo9_A 197 LGAEAVQMG 205 (326)
T ss_dssp HTCSEEEES
T ss_pred hCCCEEEec
Confidence 999987653
No 177
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=47.51 E-value=1.2e+02 Score=29.03 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCCce-EEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC------C
Q 006774 67 AVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK------P 136 (632)
Q Consensus 67 ~eALe~L~e~~~~pD-LVILDi~MPdm-dG--leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K------P 136 (632)
.+..+.+.+.. ++ +++.+..-.+. .| ++++++++....+|||...+-.+.+.+.++++.|+++.+.= |
T Consensus 155 ~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVELG--AGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHHT--CCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHcC--CCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 44444444432 55 55565542221 23 88999998767899999888888888888889999988653 4
Q ss_pred CCHHHHHHH
Q 006774 137 IREEELKNI 145 (632)
Q Consensus 137 ~~~eeL~~~ 145 (632)
++..++++.
T Consensus 233 ~~~~~~~~~ 241 (252)
T 1ka9_F 233 IPIPKLKRY 241 (252)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 566665544
No 178
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=46.37 E-value=86 Score=30.51 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCCceEEEE-ecCCCC-CC--HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 66 AAVALDILRERKGCFDVVLS-DVHMPD-MD--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 66 g~eALe~L~e~~~~pDLVIL-Di~MPd-md--GleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
..+..+.+.+.. ++.|++ ++.-.+ .. .++++++++...++|||...+-.+.+.+.++++.||++.+.=.
T Consensus 158 ~~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vgs 230 (266)
T 2w6r_A 158 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAAS 230 (266)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEEST
T ss_pred HHHHHHHHHHcC--CCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHccH
Confidence 445444444432 565554 443211 11 3789999987778999999988888888898999999987653
No 179
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=46.33 E-value=86 Score=29.49 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=58.6
Q ss_pred HHHHhCCCeE-EEEcCHHHHHHHHHHcCCCceEEEEecCCC-CCCHHHHHHHHhccC--CCcEEEEecCCCHHHHHHHHh
Q 006774 51 QMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIR 126 (632)
Q Consensus 51 ~lL~~~gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MP-dmdGleLL~~Lr~~~--~iPIIILSa~~d~e~~~eAl~ 126 (632)
...+..+..+ ..+.+..++.+.... ..|.|++ .| +..|++.+++++... ++||+...+-. .+.+.++++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~ 167 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWID 167 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHH
Confidence 3344445442 247888888766542 3898886 22 123578888886543 48998877765 667788889
Q ss_pred cCCcEEEeCC-C-CH----HHHHHHHHHHH
Q 006774 127 HGACDYLIKP-I-RE----EELKNIWQHVV 150 (632)
Q Consensus 127 ~GA~DYL~KP-~-~~----eeL~~~L~~vl 150 (632)
.||+.+..=. + .. ++....++.+.
T Consensus 168 ~Ga~gv~vGsai~~~~~~~~d~~~~~~~l~ 197 (212)
T 2v82_A 168 AGCAGAGLGSDLYRAGQSVERTAQQAAAFV 197 (212)
T ss_dssp HTCSEEEECTTTCCTTCCHHHHHHHHHHHH
T ss_pred cCCCEEEEChHHhCCCCCHHHHHHHHHHHH
Confidence 9999987543 2 22 45555555443
No 180
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=46.08 E-value=1.5e+02 Score=30.84 Aligned_cols=101 Identities=8% Similarity=0.122 Sum_probs=63.2
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEEcCHHHHHHHHHHcCCCceEEEEecCCCC------------CC
Q 006774 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (632)
Q Consensus 33 glrVLIVD----Dd~~ir~~L~~lL~~~-gy~V--~~a~sg~eALe~L~e~~~~pDLVILDi~MPd------------md 93 (632)
+..++.++ +.....+.++.+-+.. +..+ ..+.+.++|..+.+. ..|.|.+... ++ ..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYP 207 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCcc
Confidence 45566665 3344555555554544 4443 367888888877653 3798877532 21 12
Q ss_pred HHHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe-CCC
Q 006774 94 GFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-KPI 137 (632)
Q Consensus 94 GleLL~~Lr---~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~-KP~ 137 (632)
-+.++..+. ...++|||.-.+-.+...+.+|+.+||+.... +++
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 234444442 22468999888888899999999999998644 454
No 181
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=45.54 E-value=62 Score=31.10 Aligned_cols=67 Identities=24% Similarity=0.300 Sum_probs=45.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEEcCHHHHHHHHHHc---CCCceEEEEecCCCCCCHHHHHHHH
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRER---KGCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~--V-~~a~sg~eALe~L~e~---~~~pDLVILDi~MPdmdGleLL~~L 101 (632)
+.+|..||-++...+..+..++..++. + ....++.+.+..+... ...||+|++|...+ +-.++++.+
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~--~~~~~l~~~ 167 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP--NYIKYHERL 167 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG--GHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH--HHHHHHHHH
Confidence 568999999999999999999877652 4 3566777766555321 23599999995422 233444444
No 182
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=45.36 E-value=88 Score=29.55 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=56.2
Q ss_pred HHHHHHHHHhC-CCeE-EEEcCHHHHHHHHHHcCCCceEEEEecC-----CCCC--C--HHHHHHHHhccCCCcEEEEec
Q 006774 46 LRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-----MPDM--D--GFKLLEHIGLEMDLPVIMMSA 114 (632)
Q Consensus 46 r~~L~~lL~~~-gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~-----MPdm--d--GleLL~~Lr~~~~iPIIILSa 114 (632)
.+.++.+-+.. +..+ ..+.+.+++.+... . ..|+|.+... ..+. . +++++++++...++|||...+
T Consensus 107 ~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~-~--G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GG 183 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMADIATVEEAKNAAR-L--GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGN 183 (223)
T ss_dssp HHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-T--TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESS
T ss_pred HHHHHHHHHhCCCceEEecCCCHHHHHHHHH-c--CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecC
Confidence 34444444332 4443 46677888776543 2 3787765321 0111 2 456788887656899998888
Q ss_pred CCCHHHHHHHHhcCCcEEEeC
Q 006774 115 DGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 115 ~~d~e~~~eAl~~GA~DYL~K 135 (632)
-.+.+.+.++++.||+.++.=
T Consensus 184 I~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 184 VITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCHHHHHHHHHcCCCEEEEC
Confidence 878999999999999988764
No 183
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=45.11 E-value=18 Score=36.71 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=40.1
Q ss_pred HHHHHHHhcc-CCCcEEEEecCC------CHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 006774 95 FKLLEHIGLE-MDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 95 leLL~~Lr~~-~~iPIIILSa~~------d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
+++++.+|.. .++|+++++-.. -.....++.++|+++.+.-.+..++....+..+
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHH
Confidence 6777777765 789999987532 245577788999999999778888765555443
No 184
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=45.08 E-value=31 Score=34.84 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=39.0
Q ss_pred HHHHHHHhccCCCcEEEEecCC------CHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Q 006774 95 FKLLEHIGLEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 95 leLL~~Lr~~~~iPIIILSa~~------d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
+++++.+|...++|||+++-.. .......+.++|+++++.-.+..+++...+..+
T Consensus 80 ~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 80 LELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp HHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 5677888766789999985222 234456678999999998778777766655544
No 185
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=45.08 E-value=23 Score=35.89 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=39.7
Q ss_pred HHHHHHHHhcc-CCCcEEEEecC------CCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHH
Q 006774 94 GFKLLEHIGLE-MDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 148 (632)
Q Consensus 94 GleLL~~Lr~~-~~iPIIILSa~------~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~ 148 (632)
.+++++++|.. .++|+|+++-. .-.....++.++|+++.+.-.+..+|.......
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~ 145 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAA 145 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Confidence 36677778765 78999998732 234557788899999999977888775544443
No 186
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=45.07 E-value=1.7e+02 Score=26.14 Aligned_cols=106 Identities=16% Similarity=0.139 Sum_probs=69.4
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCeEEE-E--cCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006774 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVTT-C--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 33 glrVLIVDDd~-~ir~~L~~lL~~~gy~V~~-a--~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iP 108 (632)
.++++|+.+.+ .....++..++..+ .|.. . -+.++..+++. ..|++|+-... +.-|..+++.+. ..+|
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~----~ad~~l~ps~~-e~~~~~~~Ea~a--~G~P 141 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC--LGAI 141 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT----TCSEEEECCSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH----HCCEEEECCCC-CCccHHHHHHHH--CCCC
Confidence 57888887754 25566777777765 4444 2 34446555553 26888875433 333666777764 4677
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
||.. . .....+.+ .|..+++..|-+.++|...+..++.
T Consensus 142 vI~~-~---~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 142 PIAS-A---VGGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEEE-S---CHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEEe-C---CCChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 7654 2 22344555 7788999999999999999988875
No 187
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=44.88 E-value=1.5e+02 Score=32.20 Aligned_cols=99 Identities=16% Similarity=0.279 Sum_probs=63.0
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EEcCHHHHHHHHHHcCCCceEEEEecCC--------------CC
Q 006774 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM--------------PD 91 (632)
Q Consensus 33 glrVLIVD----Dd~~ir~~L~~lL~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~M--------------Pd 91 (632)
+..++.++ +.....+.++.+-+.. +..|. .+.+.++|..+.+.. .|.|.+...- |.
T Consensus 267 G~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aG---ad~I~vg~~~G~~~~t~~~~~~g~~~ 343 (514)
T 1jcn_A 267 GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAG---VDGLRVGMGCGSICITQEVMACGRPQ 343 (514)
T ss_dssp TCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSCCBTTBCCCSCCCCH
T ss_pred CCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcC---CCEEEECCCCCcccccccccCCCccc
Confidence 34455552 2233445555555554 45544 477888877766542 7877774321 11
Q ss_pred CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 92 MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 92 mdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
...+.++..++...++|||.-.+-.+...+.+++..||+....
T Consensus 344 ~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 344 GTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 2245667777665689999888888889999999999988654
No 188
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=44.86 E-value=1.4e+02 Score=32.43 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=65.2
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EEcCHHHHHHHHHHcCCCceEEEEecCCC-----------CCCH
Q 006774 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMDG 94 (632)
Q Consensus 33 glrVLIVD----Dd~~ir~~L~~lL~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MP-----------dmdG 94 (632)
+..++++| +.....+.++.+-+.. +..+. .+.+.++|..+... ..|.|.+-+.-. +...
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~vg~g~Gs~~~t~~~~g~g~p~ 317 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA---GADAVKVGIGPGSICTTRIVAGVGVPQ 317 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTCHHHHHTCBCCCH
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc---CCCEEEECCCCCcCCCccccCCCCccH
Confidence 45677776 3445556666665554 33333 47888888776653 379888732100 1224
Q ss_pred HHHHHHHhc---cCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 95 FKLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 95 leLL~~Lr~---~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
++++..+.. ..++|||.-.+-.+...+.+++.+||+....=
T Consensus 318 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 318 ISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp HHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeec
Confidence 555555532 34799999888888899999999999988764
No 189
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=44.63 E-value=7.1 Score=37.86 Aligned_cols=46 Identities=13% Similarity=0.118 Sum_probs=34.7
Q ss_pred CcChHHHHHHHHHHHHHHHHhhhhh----hhc--CCCccccccccccccccCcCccee
Q 006774 258 GLTRENVASHLQKFRLYLKRLNGVS----QQG--GITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 258 gltre~taSHLqRvr~ylk~L~~~A----~~~--Gls~~~~e~i~~AspLHDiGKi~i 309 (632)
+...++|+.|.-+|+.++..| | ... +++. +.+..++-+||+|++-+
T Consensus 26 ~~~~EnVaeHS~~VA~lA~~l---a~~~~~~~~~~vD~---~~~~~~aLlHDi~E~~~ 77 (201)
T 2paq_A 26 NVRTENVSEHSLQVAMVAHAL---AAIKNRKFGGNVNA---ERIALLAMYHDASEVLT 77 (201)
T ss_dssp CSSCCBHHHHHHHHHHHHHHH---HHHHHHHSCCCCCH---HHHHHHHHHTTTTHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHH---HhhhHHhcCcccCH---HHHHHHHHhcccccccC
Confidence 335678999999999999988 6 344 3443 45555678999999976
No 190
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=44.46 E-value=90 Score=30.09 Aligned_cols=94 Identities=18% Similarity=0.226 Sum_probs=56.0
Q ss_pred HHHHHHHcCC-----CCCCCcccccccCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEEcCHHHHHHHHHH
Q 006774 4 LQRIVQSSGG-----SGYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRE 75 (632)
Q Consensus 4 ~~~lv~~~GG-----~G~gs~~~~~~~~p~~~p~glrVLIVDDd~~ir~~L~~lL~~~gy~--V-~~a~sg~eALe~L~e 75 (632)
+..++....+ .|.|.+..... +....+.+.+|..||-++...+..+..+...+.. + ....+..+.+..+.
T Consensus 55 l~~l~~~~~~~~VLdiG~G~G~~~~~-la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~- 132 (248)
T 3tfw_A 55 LALLVRLTQAKRILEIGTLGGYSTIW-MARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG- 132 (248)
T ss_dssp HHHHHHHHTCSEEEEECCTTSHHHHH-HHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC-
T ss_pred HHHHHhhcCCCEEEEecCCchHHHHH-HHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC-
Confidence 3444444455 35555443222 2233344679999999999999999999876542 3 35666666554331
Q ss_pred cCCCceEEEEecCCCCCCHHHHHHHH
Q 006774 76 RKGCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 76 ~~~~pDLVILDi~MPdmdGleLL~~L 101 (632)
....||+|++|...+ +-..+++.+
T Consensus 133 ~~~~fD~V~~d~~~~--~~~~~l~~~ 156 (248)
T 3tfw_A 133 ECPAFDLIFIDADKP--NNPHYLRWA 156 (248)
T ss_dssp SCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred CCCCeEEEEECCchH--HHHHHHHHH
Confidence 112599999987432 233455555
No 191
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=44.41 E-value=93 Score=27.16 Aligned_cols=92 Identities=11% Similarity=0.148 Sum_probs=50.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcC-HHHHHHHHHHcCCCceEEEEecCCCCC-CHHHHHHHHhc-cCCCcE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGL-EMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~s-g~eALe~L~e~~~~pDLVILDi~MPdm-dGleLL~~Lr~-~~~iPI 109 (632)
+.+|.++|.++...+.++ ..++.+....- -.+.++.+.- ...|+||+-+ ++. .-..++..++. .+.++|
T Consensus 30 g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~i--~~ad~vi~~~--~~~~~n~~~~~~a~~~~~~~~i 101 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAHL--ECAKWLILTI--PNGYEAGEIVASARAKNPDIEI 101 (140)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTTG--GGCSEEEECC--SCHHHHHHHHHHHHHHCSSSEE
T ss_pred CCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcCc--ccCCEEEEEC--CChHHHHHHHHHHHHHCCCCeE
Confidence 567888888876655443 34666543321 2233332211 1378888754 322 22334444543 467777
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
|.... +.+......+.|++..+.
T Consensus 102 iar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 102 IARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp EEEES--SHHHHHHHHHTTCSEEEE
T ss_pred EEEEC--CHHHHHHHHHCCCCEEEC
Confidence 77664 344555666889986654
No 192
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=44.23 E-value=77 Score=30.19 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=45.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEEcCHHHHHHHHHHcC--CCceEEEEecCCCCCCHHHHHHHH
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~gy--~V-~~a~sg~eALe~L~e~~--~~pDLVILDi~MPdmdGleLL~~L 101 (632)
+.+.+|..+|-++...+..+..+...++ .+ ....+..+.+..+.... ..||+|++|... .+-.++++.+
T Consensus 95 ~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~ 168 (232)
T 3cbg_A 95 PPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADK--RNYPRYYEIG 168 (232)
T ss_dssp CTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG--GGHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH--HHHHHHHHHH
Confidence 3356899999999999988888876554 23 35667776665554321 359999999642 2233445544
No 193
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=43.81 E-value=93 Score=28.88 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=56.5
Q ss_pred HHHHHHHcCC-----CCCCCcccccccCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEEcCHHHHHHHHHH
Q 006774 4 LQRIVQSSGG-----SGYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRE 75 (632)
Q Consensus 4 ~~~lv~~~GG-----~G~gs~~~~~~~~p~~~p~glrVLIVDDd~~ir~~L~~lL~~~gy~--V-~~a~sg~eALe~L~e 75 (632)
+..++....+ .|.|.+..... +....+.+.+|..||-++...+..+..++..+.. + ....+..+.+..+..
T Consensus 56 l~~l~~~~~~~~vLdiG~G~G~~~~~-la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 134 (225)
T 3tr6_A 56 LALLVKLMQAKKVIDIGTFTGYSAIA-MGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIH 134 (225)
T ss_dssp HHHHHHHHTCSEEEEECCTTSHHHHH-HHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHT
T ss_pred HHHHHHhhCCCEEEEeCCcchHHHHH-HHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhh
Confidence 3444444444 35555443222 2223344679999999999999999998876542 3 356677776655542
Q ss_pred cC--CCceEEEEecCCCCCCHHHHHHHH
Q 006774 76 RK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 76 ~~--~~pDLVILDi~MPdmdGleLL~~L 101 (632)
.. ..+|+|++|...+ +-.++++.+
T Consensus 135 ~~~~~~fD~v~~~~~~~--~~~~~l~~~ 160 (225)
T 3tr6_A 135 AGQAWQYDLIYIDADKA--NTDLYYEES 160 (225)
T ss_dssp TTCTTCEEEEEECSCGG--GHHHHHHHH
T ss_pred ccCCCCccEEEECCCHH--HHHHHHHHH
Confidence 10 3599999987422 233444444
No 194
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=43.56 E-value=1.7e+02 Score=30.26 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=53.5
Q ss_pred CCCeE-EEEcCHHHHHHHHHHcCCCceEEEEecCC---------CC-------CCHHHHHHHHhccCCCcEEEEecCCCH
Q 006774 56 CLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHM---------PD-------MDGFKLLEHIGLEMDLPVIMMSADGRV 118 (632)
Q Consensus 56 ~gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~M---------Pd-------mdGleLL~~Lr~~~~iPIIILSa~~d~ 118 (632)
.+..+ ..+.+.+++..... . .+|.|+++-.- ++ ...+++++.++...++|||+..+-.+.
T Consensus 144 ~g~~v~~~v~t~~~a~~a~~-~--GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~ 220 (369)
T 3bw2_A 144 AGTLTLVTATTPEEARAVEA-A--GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRG 220 (369)
T ss_dssp TTCEEEEEESSHHHHHHHHH-T--TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSH
T ss_pred CCCeEEEECCCHHHHHHHHH-c--CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCH
Confidence 34444 35777777765543 2 38999885311 10 234888888876668999988777788
Q ss_pred HHHHHHHhcCCcEEEe
Q 006774 119 SAVMRGIRHGACDYLI 134 (632)
Q Consensus 119 e~~~eAl~~GA~DYL~ 134 (632)
+.+.+++..||+.+..
T Consensus 221 ~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 221 GQIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 8999999999988754
No 195
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=42.98 E-value=10 Score=38.38 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=35.0
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCeEEEEcCHHH--HHHHHHHcCCCceEEEEe
Q 006774 34 LRVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAV--ALDILRERKGCFDVVLSD 86 (632)
Q Consensus 34 lrVLIVDDd--~~ir~~L~~lL~~~gy~V~~a~sg~e--ALe~L~e~~~~pDLVILD 86 (632)
.|||||+++ +.....+...|+..+|+|.......- -.+.|. .+|+||++
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~ 57 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILS 57 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEE
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEc
Confidence 589999988 66778899999999999876554321 112332 38999887
No 196
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=42.98 E-value=49 Score=32.28 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHcCCCceEEEEecC---C-CCC-CHHHHHHHHhccCCCcEE--EEecCCCHHHHHHHHhcCCcEEEeCCC
Q 006774 65 QAAVALDILRERKGCFDVVLSDVH---M-PDM-DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLIKPI 137 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~---M-Pdm-dGleLL~~Lr~~~~iPII--ILSa~~d~e~~~eAl~~GA~DYL~KP~ 137 (632)
+..+.++.+.+.. .|++=+|+. . |.. .|.++++.||...+.|+. +++... ..++..+.++||+.+..-..
T Consensus 18 ~l~~~i~~~~~~G--ad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~dp-~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 18 RLGEEIKAVDEAG--ADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEP-EKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp GHHHHHHHHHHTT--CSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSG-GGTHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHcC--CCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccCH-HHHHHHHHHcCCCEEEECcc
Confidence 4445566555432 666666652 1 222 377999999876566665 666433 44677888999998866554
Q ss_pred --CHHHHHHHHHHH
Q 006774 138 --REEELKNIWQHV 149 (632)
Q Consensus 138 --~~eeL~~~L~~v 149 (632)
..++..+.++.+
T Consensus 95 ~~~~~~~~~~~~~i 108 (230)
T 1tqj_A 95 HNASPHLHRTLCQI 108 (230)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred cccchhHHHHHHHH
Confidence 444555555554
No 197
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=42.95 E-value=1.4e+02 Score=28.69 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=50.5
Q ss_pred HHHHHHHhCCCeEEEEc---CHHHHHHHHHHcCCCce-EEEEecCCCCCC---------HHHHHHHHhccCCCcEEEEec
Q 006774 48 ILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFD-VVLSDVHMPDMD---------GFKLLEHIGLEMDLPVIMMSA 114 (632)
Q Consensus 48 ~L~~lL~~~gy~V~~a~---sg~eALe~L~e~~~~pD-LVILDi~MPdmd---------GleLL~~Lr~~~~iPIIILSa 114 (632)
.+.+.+++.+..+...- +..+.++.+... .| +|.+ +..++.. .++.+++++...++||++-.+
T Consensus 124 ~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GG 199 (248)
T 1geq_A 124 EFTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFG 199 (248)
T ss_dssp HHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHCSSCEEEESC
T ss_pred HHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEee
Confidence 34444555555543222 445666555443 23 5433 2224322 356777777655789888777
Q ss_pred CCCHHHHHHHHhcCCcEEEeC
Q 006774 115 DGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 115 ~~d~e~~~eAl~~GA~DYL~K 135 (632)
-...+.+.++++.||+.++.=
T Consensus 200 I~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 200 VSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC
T ss_pred cCCHHHHHHHHHcCCCEEEEc
Confidence 777688888889999999865
No 198
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=42.43 E-value=1.1e+02 Score=32.17 Aligned_cols=88 Identities=11% Similarity=0.158 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhC-CCeEE--EEcCHHHHHHHHHHcCCCceEEEEecCC---------C--CCCHHHHHHHHhc---cCC
Q 006774 44 TCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM---------P--DMDGFKLLEHIGL---EMD 106 (632)
Q Consensus 44 ~ir~~L~~lL~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~M---------P--dmdGleLL~~Lr~---~~~ 106 (632)
...+.++.+-+.. +..|. .+.+.++|..+.+ . .+|.|.+...- . +...++.+..+.. ..+
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~-~--Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ 256 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS-V--GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTN 256 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT-T--TCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh-c--CCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcC
Confidence 3444554444444 45554 4677777766543 2 48988882110 0 1223555555532 357
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+|||...+-.+...+.+++..||+....
T Consensus 257 ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 257 ICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp CEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 9999888888889999999999998765
No 199
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=42.42 E-value=1.4e+02 Score=28.14 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHcCCCceEEE-EecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 65 QAAVALDILRERKGCFDVVL-SDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVI-LDi~MPdm---dGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+..+.++.+.+.. .|.|+ .++...+. -.++.+++++...++||++-.+-...+.+.++++.||+.++.
T Consensus 155 ~~~e~~~~~~~~G--~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~v 226 (253)
T 1h5y_A 155 DAVKWAKEVEELG--AGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHhCC--CCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHH
Confidence 3444444444433 67665 44432111 146788888765689999888777778888888999998864
No 200
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=42.07 E-value=1.1e+02 Score=28.54 Aligned_cols=69 Identities=23% Similarity=0.240 Sum_probs=45.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEEcCHHHHHHHHHHcC--CCceEEEEecCCCCCCHHHHHHHH
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~gy--~V-~~a~sg~eALe~L~e~~--~~pDLVILDi~MPdmdGleLL~~L 101 (632)
+.+.+|..+|-++...+..++.++..+. .+ ....+..+.+..+.... ..+|+|++|.. ..+-.++++.+
T Consensus 92 ~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~ 165 (229)
T 2avd_A 92 PADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERC 165 (229)
T ss_dssp CTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHH
Confidence 3356899999999999999998887654 23 34567766665554321 35999999864 22334455554
No 201
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=40.75 E-value=2e+02 Score=25.63 Aligned_cols=107 Identities=13% Similarity=0.150 Sum_probs=65.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHH--h--C--CCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCC
Q 006774 33 GLRVLVVDDDITCLRILEQMLR--R--C--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~--~--~--gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~ 106 (632)
.++++|+.+.+.. ..++..+. . . ...+.-.-+.++..+++.. .|++|+-.. .+.-|+.+++.+. ..
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama--~G 121 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA--SG 121 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH--TT
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH--cC
Confidence 4677887765432 23333333 2 1 2334444455666666654 577776332 2334666777664 46
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 107 iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
+|||... .....+.+..|..+++. +-+.++|.+++..++..
T Consensus 122 ~PvI~~~----~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 122 KPVIAVN----EGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp CCEEEES----SHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred CcEEEeC----CCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 7887642 23445666778889999 99999999999988753
No 202
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=40.68 E-value=2.1e+02 Score=28.10 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=58.7
Q ss_pred HHHHHHhCCC--eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEecCCCHHHHHHH
Q 006774 49 LEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (632)
Q Consensus 49 L~~lL~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr--~~~~iPIIILSa~~d~e~~~eA 124 (632)
++..|..... .....-+..+.++.+... .+|.|++|+.=...+--++...++ .....++++.+...+...+..+
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~~--gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~ 87 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGLA--GFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRL 87 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTTS--CCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHH
Confidence 5555654322 222223344445555443 499999998544223223333332 2245788999988888888889
Q ss_pred HhcCCcEEEe-CCCCHHHHHHHHHH
Q 006774 125 IRHGACDYLI-KPIREEELKNIWQH 148 (632)
Q Consensus 125 l~~GA~DYL~-KP~~~eeL~~~L~~ 148 (632)
++.|++..+. |--+.++++.+++.
T Consensus 88 l~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 88 LDIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred HhcCCceeeecCcCCHHHHHHHHHH
Confidence 9999987543 33578888655443
No 203
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=40.63 E-value=93 Score=30.97 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=32.2
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 95 leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
++++++++...++|||...+-.+.+.+.+++..||+...
T Consensus 230 ~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~ 268 (311)
T 1ep3_A 230 LKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVA 268 (311)
T ss_dssp HHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 477888876668999988777788999999999998764
No 204
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=39.37 E-value=21 Score=36.60 Aligned_cols=69 Identities=10% Similarity=-0.024 Sum_probs=47.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCC-CCCHHHHHHHH
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHI 101 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MP-dmdGleLL~~L 101 (632)
+-++.+||-++.....|++.++...-..+...++.+++..+......+|+||+|-=-. ..+.-++++.|
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L 182 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAI 182 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHH
Confidence 3689999999999999998887643334466788888876644333589999995332 12344455554
No 205
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=39.21 E-value=1.1e+02 Score=29.78 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 65 sg~eALe~L~e~~~~pD-LVILDi~MPdm---dGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
+..+..+.+.+.. .| |.+.|...... .-+++++.++....+|+|+...-.+.+.+.++++.||+..+.=.
T Consensus 31 ~~~~~a~~~~~~G--a~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~ 104 (266)
T 2w6r_A 31 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAAS 104 (266)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCC
T ss_pred CHHHHHHHHHHCC--CCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhH
Confidence 4555555554432 44 55567554321 12788899987778999998777777888899999999887644
No 206
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=38.84 E-value=43 Score=33.00 Aligned_cols=54 Identities=13% Similarity=0.320 Sum_probs=35.7
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHH---HHHHHHhcCCcEEEeCCCCHHHHHHHHHH
Q 006774 94 GFKLLEHIGLEMDLPVIMMSADGRVS---AVMRGIRHGACDYLIKPIREEELKNIWQH 148 (632)
Q Consensus 94 GleLL~~Lr~~~~iPIIILSa~~d~e---~~~eAl~~GA~DYL~KP~~~eeL~~~L~~ 148 (632)
++++++.++...++|+++++- .+.. ....+.+.|+++++.-....+++...+..
T Consensus 82 ~~~~i~~ir~~~~~Pv~~m~~-~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~ 138 (262)
T 1rd5_A 82 VLEMLREVTPELSCPVVLLSY-YKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSE 138 (262)
T ss_dssp HHHHHHHHGGGCSSCEEEECC-SHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEec-CcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHH
Confidence 567788888777899988752 2211 12348899999998865665665555544
No 207
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=38.03 E-value=2.5e+02 Score=28.09 Aligned_cols=106 Identities=15% Similarity=0.125 Sum_probs=69.4
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCeEEEE-c--CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006774 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVTTC-S--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 33 glrVLIVDDd~-~ir~~L~~lL~~~gy~V~~a-~--sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iP 108 (632)
.++++|+.+.+ .....++.+.+..+ .+..+ . +.++..+++.. .|++++-... +.-|..+++.+. ..+|
T Consensus 285 ~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~-e~~~~~~~EAma--~G~P 356 (439)
T 3fro_A 285 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMC--LGAI 356 (439)
T ss_dssp GEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECBSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHH----CCEEEeCCCC-CCccHHHHHHHH--CCCC
Confidence 57788887764 34466777777766 44433 3 45555555532 5877765543 344666777664 4678
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
||.. .. ....+.++.| .+++..|-+.++|.+++..++.
T Consensus 357 vi~s-~~---~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 357 PIAS-AV---GGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEEE-SS---THHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred eEEc-CC---CCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 7763 22 2344555567 8999999999999999998876
No 208
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=37.60 E-value=1.5e+02 Score=30.30 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=54.1
Q ss_pred hCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCC-----CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcC
Q 006774 55 RCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG 128 (632)
Q Consensus 55 ~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MP-----dmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~G 128 (632)
..++.+. .+.+.++|..+.+ . .+|.|+++-.-. ....+++++.++...++|||+-.+-.+.+.+.+++..|
T Consensus 108 ~~g~~v~~~v~~~~~a~~~~~-~--GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~G 184 (332)
T 2z6i_A 108 EAGIIVIPVVPSVALAKRMEK-I--GADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFMLG 184 (332)
T ss_dssp HTTCEEEEEESSHHHHHHHHH-T--TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTT
T ss_pred HcCCeEEEEeCCHHHHHHHHH-c--CCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC
Confidence 3455444 4677777655443 2 378888863211 23467888888766689999888888888999999999
Q ss_pred CcEEEe
Q 006774 129 ACDYLI 134 (632)
Q Consensus 129 A~DYL~ 134 (632)
|+....
T Consensus 185 AdgV~v 190 (332)
T 2z6i_A 185 AEAVQV 190 (332)
T ss_dssp CSEEEE
T ss_pred CCEEEe
Confidence 988754
No 209
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=37.55 E-value=1.5e+02 Score=27.93 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=46.7
Q ss_pred cCHHHHHHHHHHcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 64 SQAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 64 ~sg~eALe~L~e~~~~pD-LVILDi~MPdm---dGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
.+..+..+.+.+.. .| +.+.|...... ..+++++.++...++|+++-..-.+.+.+.++++.||+.+..
T Consensus 33 ~~~~~~a~~~~~~G--~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 33 GDPVEMAVRYEEEG--ADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp ECHHHHHHHHHHTT--CSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ccHHHHHHHHHHcC--CCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 35555566665543 67 55555443221 246777888766689999877777788888899999987764
No 210
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=36.89 E-value=2.7e+02 Score=28.88 Aligned_cols=92 Identities=10% Similarity=0.025 Sum_probs=55.7
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCCC--eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006774 35 RVLVVDDDITCLRILEQML----RRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 35 rVLIVDDd~~ir~~L~~lL----~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iP 108 (632)
-|||-|.+-...-.+...+ +.... ..+.+.+.+++.+.+.. ..|+|.+|- ++--++-+.++....-.
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn----~~~~~l~~av~~l~~~v 276 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDN----FSLEMMREAVKINAGRA 276 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEES----CCHHHHHHHHHHHTTSS
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhCCCC
Confidence 4777776644332233333 22222 24578899999888864 389999995 23323322222221224
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
.|..|+.-+.+.+.+..+.|+|.+-
T Consensus 277 ~ieaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 277 ALENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp EEEEESSCCHHHHHHHHTTTCSEEE
T ss_pred eEEEECCCCHHHHHHHHHcCCCEEE
Confidence 5667888888888888899997553
No 211
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=36.78 E-value=50 Score=31.95 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 67 ~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+.+++.+.+.+ ||+| . .||+.- .+++++++...++|||.=-.-.+.+.+.+|+++||+..-+
T Consensus 117 ~~~~~~i~~~~--PD~i--E-iLPGi~-p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 117 NKGVALIQKVQ--PDCI--E-LLPGII-PEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHHC--CSEE--E-EECTTC-HHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHhhcC--CCEE--E-ECCchh-HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 34677777665 8977 3 367754 3788999877889999866677899999999999987654
No 212
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=36.73 E-value=1.1e+02 Score=31.49 Aligned_cols=66 Identities=12% Similarity=-0.019 Sum_probs=43.7
Q ss_pred EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEE
Q 006774 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 60 V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DY 132 (632)
.+.+.+.+++.+.+.. .+|+|.+|- ++--++-+.++....-..|..|+.-+.+.+.+..+.|+|.+
T Consensus 213 eVEvdtlde~~eAl~a---GaD~I~LDn----~~~~~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 213 QIEVETLDQLRTALAH---GARSVLLDN----FTLDMMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEEESSHHHHHHHHHT---TCEEEEEES----CCHHHHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 3468899998888864 389999995 33333333333222223556777778888888889999655
No 213
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=36.66 E-value=1.4e+02 Score=28.77 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCCce-EEEEecCCCC-CC--HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 66 AAVALDILRERKGCFD-VVLSDVHMPD-MD--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 66 g~eALe~L~e~~~~pD-LVILDi~MPd-md--GleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
..+.++.+.+. .++ +++.++.-.+ .. .++++++++...++|||.-.+-.+.+.+.++++.|++.++.=
T Consensus 153 ~~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vG 224 (253)
T 1thf_D 153 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 224 (253)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHC--CCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHH
Confidence 44544444443 266 4555654222 12 378999998767899999888888888889999999988653
No 214
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=36.40 E-value=1.6e+02 Score=28.27 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHcCCCce-EEEEecCCCCCC---HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 65 QAAVALDILRERKGCFD-VVLSDVHMPDMD---GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 65 sg~eALe~L~e~~~~pD-LVILDi~MPdmd---GleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+..+..+.+.+.. .| +.+.|....... -+++++.++...++|+|+...-.+.+.+.++++.||+..+.=
T Consensus 32 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 32 DPVEAARAYDEAG--ADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp CHHHHHHHHHHHT--CSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHHcC--CCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 4455555554432 44 556676543322 246677787777899999988888999999999999887763
No 215
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=35.84 E-value=2.4e+02 Score=30.63 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=65.1
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEEcCHHHHHHHHHHcCCCceEEEEecCCC-----------CCCH
Q 006774 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMDG 94 (632)
Q Consensus 33 glrVLIVD----Dd~~ir~~L~~lL~~~-gy~V--~~a~sg~eALe~L~e~~~~pDLVILDi~MP-----------dmdG 94 (632)
+..++++| +.....+.++.+-+.. +..| ..+.+.++|..++.. ..|.|++...-. +..-
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~Vg~g~Gs~~~tr~~~g~g~p~ 319 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIGPGSICTTRIVTGVGVPQ 319 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH---TCSEEEECSSCCTTBCHHHHHCCCCCH
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh---CCCEEEECCCCCcCcccccccCCCccH
Confidence 45677776 3445556666666654 3333 357788888777654 379888753211 1223
Q ss_pred HHHHHHHhc---cCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 95 FKLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 95 leLL~~Lr~---~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
++++..+.. ...+|||.-.+-.+...+.+++.+||+..+.=
T Consensus 320 ~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 320 ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 455555532 34799998777788899999999999988764
No 216
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=35.83 E-value=91 Score=32.20 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=53.6
Q ss_pred EEEEeCCHHHHHHHHHHH----HhCC--CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006774 36 VLVVDDDITCLRILEQML----RRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (632)
Q Consensus 36 VLIVDDd~~ir~~L~~lL----~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPI 109 (632)
|||=|.+-...-.+...+ +... ...+.+.+.+|+.+.+.. ..|+|++|- | +--++-+.++....-..
T Consensus 181 vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~a---GaDiImLDn-~---s~~~l~~av~~~~~~v~ 253 (300)
T 3l0g_A 181 VLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLSN---NVDMILLDN-M---SISEIKKAVDIVNGKSV 253 (300)
T ss_dssp EEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHT---TCSEEEEES-C---CHHHHHHHHHHHTTSSE
T ss_pred EEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHc---CCCEEEECC-C---CHHHHHHHHHhhcCceE
Confidence 677676644332223322 2221 234578999999998875 389999995 3 22222222222122346
Q ss_pred EEEecCCCHHHHHHHHhcCCcEE
Q 006774 110 IMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DY 132 (632)
|..|+.-+.+.+.+..+.|+|.+
T Consensus 254 leaSGGIt~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 254 LEVSGCVNIRNVRNIALTGVDYI 276 (300)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEE
Confidence 66788778888888888898754
No 217
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=35.29 E-value=3.2e+02 Score=26.87 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=38.0
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 80 pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.|++++.- |.-+++.+. ..+|||....... ..+.++.| .+++..+ +.++|.+++..++.
T Consensus 283 ad~~v~~s------g~~~lEA~a--~G~Pvi~~~~~~~---~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPS--LGVPVLVLRDTTE---RPEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp CSEEEECC------HHHHHHHHH--HTCCEEECSSCCS---CHHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CcEEEECC------CChHHHHHh--cCCCEEEecCCCC---CceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 46666542 433555542 4678886522122 23446778 8898877 99999999988875
No 218
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=35.23 E-value=2.1e+02 Score=29.63 Aligned_cols=107 Identities=13% Similarity=0.122 Sum_probs=68.7
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EEc-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006774 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~-~ir~~L~~lL~~~gy~V~-~a~-sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPI 109 (632)
.++++|+.+.+ ...+.++.+....+-.|. ... +.++..+++.. .|++++-... +.-|+-+++.+. ..+||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~-E~~~~~~lEAma--~G~Pv 392 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSRF-EPCGLTQLYALR--YGCIP 392 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCSC-CSSCSHHHHHHH--HTCEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECccc-CCCCHHHHHHHH--CCCCE
Confidence 56888888764 356677777766543343 222 33333455543 5777765432 334556666663 36788
Q ss_pred EEEecCCCHHHHHHHHhcC---------CcEEEeCCCCHHHHHHHHHHHH
Q 006774 110 IMMSADGRVSAVMRGIRHG---------ACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~G---------A~DYL~KP~~~eeL~~~L~~vl 150 (632)
|... . ....+.+..| ..+++..|-+.++|.+++..++
T Consensus 393 I~s~-~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 393 VVAR-T---GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp EEES-S---HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred EEeC-C---CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 7632 2 3345666777 7899999999999999998887
No 219
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=35.18 E-value=1.8e+02 Score=27.75 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhc---CCcEEEe
Q 006774 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH---GACDYLI 134 (632)
Q Consensus 65 sg~eALe~L~e~~~~pD-LVILDi~MPdm---dGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~---GA~DYL~ 134 (632)
+..+..+.+.+. .+| ++++++.-.+. -.++++++++....+|||.-.+-.+.+.+.++++. ||+.++.
T Consensus 147 ~~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 147 DLYETLDRLNKE--GCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp BHHHHHHHHHHT--TCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 445554444443 367 55566542211 13788888876668999998888888889999998 9998764
No 220
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=35.10 E-value=2.5e+02 Score=29.21 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cC--CCcEEEEecCCCHHHHHHHHhcCCcEEEe-CCCCH
Q 006774 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EM--DLPVIMMSADGRVSAVMRGIRHGACDYLI-KPIRE 139 (632)
Q Consensus 66 g~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~---~~--~iPIIILSa~~d~e~~~eAl~~GA~DYL~-KP~~~ 139 (632)
..+.++.+... .+|.|++|+.=.-.+--.+.+.++. .. ..++++.+...+...+..+++.|++..+. |--+.
T Consensus 52 ~p~~~e~a~~~--GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~sa 129 (339)
T 1izc_A 52 STFVTKVLAAT--KPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETV 129 (339)
T ss_dssp CHHHHHHHHHT--CCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCH
T ss_pred CHHHHHHHHhC--CCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCH
Confidence 34445555544 4999999985443343334444432 11 27788988888888888999999987544 33578
Q ss_pred HHHHHHHHH
Q 006774 140 EELKNIWQH 148 (632)
Q Consensus 140 eeL~~~L~~ 148 (632)
+++..+...
T Consensus 130 ee~~~~~~~ 138 (339)
T 1izc_A 130 EEVREFVKE 138 (339)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776554
No 221
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=35.03 E-value=51 Score=31.41 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=48.4
Q ss_pred EEEcCHHHHHHHHHHcCCCceEEEEecCCCCC--------CHHHHHHHHhcc--CCCcEEEEecCCCHHHHHHHHhcCCc
Q 006774 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDM--------DGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGAC 130 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~MPdm--------dGleLL~~Lr~~--~~iPIIILSa~~d~e~~~eAl~~GA~ 130 (632)
..+.+.+++.... . ..|.|+++-..|.. -|++.++.+... ..+|||.+-+-. .+.+.++++.|++
T Consensus 93 ~s~~t~~e~~~A~--~--GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~ 167 (210)
T 3ceu_A 93 CSCHSVEEVKNRK--H--FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFG 167 (210)
T ss_dssp EEECSHHHHHTTG--G--GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCS
T ss_pred EecCCHHHHHHHh--h--CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCC
Confidence 4677888876553 2 38999887655422 267888888654 689999877655 5677888999999
Q ss_pred EEEe
Q 006774 131 DYLI 134 (632)
Q Consensus 131 DYL~ 134 (632)
++-.
T Consensus 168 gVav 171 (210)
T 3ceu_A 168 GAVV 171 (210)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8743
No 222
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=34.44 E-value=1.5e+02 Score=33.31 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=70.6
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---cCHHHHHHHHHHcCCCceEEEEecCCCC-CC-HHHHHHHHh-
Q 006774 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG- 102 (632)
Q Consensus 33 glrVLIV----DDd~~ir~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVILDi~MPd-md-GleLL~~Lr- 102 (632)
+-+||+. |-|..=...+..+|+..||+|+.. -..++.++.+.+.. +|+|.+...+.. ++ --++++.|+
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~--~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVN--ADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHT--CSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578877 566777788889999999999743 45777778887765 999999987753 22 224556664
Q ss_pred ccCCCcEEEEecCCCHHHHHHHH---hcCCcEEEeCCCCHHHHHHHHHHHH
Q 006774 103 LEMDLPVIMMSADGRVSAVMRGI---RHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 103 ~~~~iPIIILSa~~d~e~~~eAl---~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
...++||++--.....+.....+ -.||+.|... ..+-....++++
T Consensus 176 ~g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~D---A~~Av~~a~~l~ 223 (579)
T 3bul_A 176 QGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQN---ASRTVGVVAALL 223 (579)
T ss_dssp TTCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECCS---HHHHHHHHHHHT
T ss_pred cCCCCeEEEEccccchhhhhhhhhhcccCCeEEECC---HHHHHHHHHHHh
Confidence 34578876655444544432111 1288777543 334444444443
No 223
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=34.26 E-value=2.2e+02 Score=28.94 Aligned_cols=108 Identities=14% Similarity=0.168 Sum_probs=62.8
Q ss_pred CcEEEEEeCC---HHHHHHHHHHHHhCCC--eEEEE--cCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 006774 33 GLRVLVVDDD---ITCLRILEQMLRRCLY--NVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (632)
Q Consensus 33 glrVLIVDDd---~~ir~~L~~lL~~~gy--~V~~a--~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~ 105 (632)
.++++|+.+. ......++.++++.+. .|... -+.++..+++.. .|++++-.. .+.-|.-+++.+. .
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~ 348 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NESFGLVAMEAQA--S 348 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--T
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-ccCCchHHHHHHH--c
Confidence 4566777651 1233455555554432 23332 233555555553 466665432 2333566666663 4
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 106 ~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.+|||... ... ..+.+..|..+++..|-+.++|.+++..++.
T Consensus 349 G~PvI~~~-~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 349 GTPVIAAR-VGG---LPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp TCCEEEES-CTT---HHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEecC-CCC---hhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 67877643 222 3455667888999999999999999988875
No 224
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=33.67 E-value=1.1e+02 Score=30.45 Aligned_cols=107 Identities=14% Similarity=0.175 Sum_probs=61.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEE--EEcCHHHHHHHHHHcCCCceEEEEecCC------CCCCHHHHHHHHhcc
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM------PDMDGFKLLEHIGLE 104 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~M------PdmdGleLL~~Lr~~ 104 (632)
.++++|+.+.+.. ..++.+.....-.|. -.-+.++..+++.. .|++|+-... .+.-|..+++.+.
T Consensus 229 ~~~l~i~G~g~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a-- 301 (394)
T 3okp_A 229 DAQLLIVGSGRYE-STLRRLATDVSQNVKFLGRLEYQDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA-- 301 (394)
T ss_dssp TCEEEEECCCTTH-HHHHHHTGGGGGGEEEEESCCHHHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--
T ss_pred CeEEEEEcCchHH-HHHHHHHhcccCeEEEcCCCCHHHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--
Confidence 3566677655432 333333322212232 23334666666654 4777764433 1334566777664
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 105 ~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
..+|||. +.... ..+.+..| .+++..|-+.++|.+++..++.
T Consensus 302 ~G~PvI~-~~~~~---~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 302 CGVPVIA-GTSGG---APETVTPA-TGLVVEGSDVDKLSELLIELLD 343 (394)
T ss_dssp TTCCEEE-CSSTT---GGGGCCTT-TEEECCTTCHHHHHHHHHHHHT
T ss_pred cCCCEEE-eCCCC---hHHHHhcC-CceEeCCCCHHHHHHHHHHHHh
Confidence 4678876 33222 23445667 8999999999999999998874
No 225
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=33.06 E-value=1.9e+02 Score=30.10 Aligned_cols=108 Identities=10% Similarity=0.045 Sum_probs=65.4
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EEc-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006774 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~-~ir~~L~~lL~~~gy~V~-~a~-sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPI 109 (632)
.++++|+.+.+ ...+.++.+....+-.|. ... ..++..+++.. .|++++-.. .+.-|+-+++.+. ..+||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~g~~~lEAma--~G~Pv 393 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FEPCGLTQLYGLK--YGTLP 393 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cCCCcHHHHHHHH--CCCCE
Confidence 45677776653 355666666665543332 222 33333345543 477666433 2333555666653 35788
Q ss_pred EEEecCCCHHHHHHHHhcC---------CcEEEeCCCCHHHHHHHHHHHHH
Q 006774 110 IMMSADGRVSAVMRGIRHG---------ACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~G---------A~DYL~KP~~~eeL~~~L~~vlr 151 (632)
|... .....+.+..| ..+++..|-+.++|..++..++.
T Consensus 394 I~s~----~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 440 (485)
T 2qzs_A 394 LVRR----TGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFV 440 (485)
T ss_dssp EEES----SHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHH
T ss_pred EECC----CCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHH
Confidence 7642 23345666777 88999999999999999988873
No 226
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=32.98 E-value=66 Score=32.42 Aligned_cols=61 Identities=10% Similarity=0.174 Sum_probs=45.3
Q ss_pred HHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCC
Q 006774 74 RERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (632)
Q Consensus 74 ~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~ 137 (632)
.+.. ||++|+=---|..-|-.-.+++-...++|.|+++...... ..++++..-.+|+.-+.
T Consensus 61 ~~~~--pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~ 121 (283)
T 1qv9_A 61 EDFE--PDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLK-VKDEMEEQGLGYILVKP 121 (283)
T ss_dssp HHHC--CSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGG-GHHHHHHTTCEEEEETT
T ss_pred hhcC--CCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchh-hHHHHHhcCCcEEEEec
Confidence 4444 8998886545566788888888667899999999877666 55788777778876543
No 227
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=32.70 E-value=82 Score=30.78 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=37.3
Q ss_pred ceEEEEecCCCCCCH-------HHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 80 FDVVLSDVHMPDMDG-------FKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 80 pDLVILDi~MPdmdG-------leLL~~Lr~~-~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+|.|++...-|+.+| ++-++++|.. .+.+| .+.+--+.+.+.++.++||+.++.=
T Consensus 135 ~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I-~VdGGI~~~t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 135 IDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDI-EVDGGVGPDTVHKCAEAGANMIVSG 197 (228)
T ss_dssp CSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEE-EEESSCSTTTHHHHHHHTCCEEEES
T ss_pred CCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCE-EEeCCcCHHHHHHHHHcCCCEEEEe
Confidence 688888766776655 4446666543 34554 4555556778889999999987653
No 228
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=31.86 E-value=3.4e+02 Score=27.20 Aligned_cols=107 Identities=10% Similarity=0.085 Sum_probs=64.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCeEEE-Ec-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNVTT-CS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~-gy~V~~-a~-sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iP 108 (632)
..+||-||.--..-+......+... ++++.. |+ +.+.|.+..++.. ..-+..|+ -+++ ..+++-
T Consensus 22 ~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g--~~~~y~d~-------~ell----~~~~iD 88 (350)
T 4had_A 22 SMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFS--VPHAFGSY-------EEML----ASDVID 88 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHT--CSEEESSH-------HHHH----HCSSCS
T ss_pred CccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CCeeeCCH-------HHHh----cCCCCC
Confidence 4589999998766655544555543 566653 33 3444444444332 22233332 2222 235566
Q ss_pred EEEEecCCC--HHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 006774 109 VIMMSADGR--VSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (632)
Q Consensus 109 IIILSa~~d--~e~~~eAl~~GA~DYL~KP~--~~eeL~~~L~~vlr 151 (632)
+|+++.... .+.+.+|+++|..=|+-||+ +.++..+.++.+-+
T Consensus 89 aV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 135 (350)
T 4had_A 89 AVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDR 135 (350)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHH
T ss_pred EEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHH
Confidence 666655443 56788999999999999994 67777777665543
No 229
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=31.63 E-value=70 Score=29.98 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=40.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEEcCHHHHHHHHHHc--CCCceEEEEecCCC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRER--KGCFDVVLSDVHMP 90 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~--V-~~a~sg~eALe~L~e~--~~~pDLVILDi~MP 90 (632)
.+.+|.-||-++...+..++.++..+.. + ....+..+.+..+... ...||+|++|....
T Consensus 82 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 82 PGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred CCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 4579999999999999999988876542 3 3566776655443210 03599999996443
No 230
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=31.62 E-value=18 Score=35.23 Aligned_cols=41 Identities=10% Similarity=-0.073 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCcc
Q 006774 262 ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 262 e~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
...-.|+.||..++..|. +...+. ..+.+..|+.||||||.
T Consensus 24 ~H~~~H~~rV~~~a~~i~--a~~~~~---d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 24 GHDIAHVERVYNNACYIA--KRENIT---DTLVIELSSLLHDTVDS 64 (225)
T ss_dssp CHHHHHHHHHHHHHHHHH--HHTTCS---CCHHHHHHHHHTTTTCC
T ss_pred ccCHHHHHHHHHHHHHHH--hhccCC---CHHHHHHHHHHHcCCCC
Confidence 346799999999988771 233344 34677889999999984
No 231
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=31.44 E-value=1.6e+02 Score=27.94 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=55.8
Q ss_pred HHHHHHHHHhC-CCeEE-EEcCHHHHHHHHHHcCCCceEE---EEecCCCC-----CCHHHHHHHHhccCCCcEEEEecC
Q 006774 46 LRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVV---LSDVHMPD-----MDGFKLLEHIGLEMDLPVIMMSAD 115 (632)
Q Consensus 46 r~~L~~lL~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLV---ILDi~MPd-----mdGleLL~~Lr~~~~iPIIILSa~ 115 (632)
.+.++.+-+.. +..+. .+.+.+++...... ..|.| +..+. +. ...++++++++.. ++||+...+-
T Consensus 121 ~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI 195 (234)
T 1yxy_A 121 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGYT-PYSRQEAGPDVALIEALCKA-GIAVIAEGKI 195 (234)
T ss_dssp HHHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHT-TCCEEEESCC
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEeeeccccC-CCCcCCCCCCHHHHHHHHhC-CCCEEEECCC
Confidence 34444444332 44443 56777887766543 37887 33221 21 1246788888766 8999988888
Q ss_pred CCHHHHHHHHhcCCcEEEeC
Q 006774 116 GRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 116 ~d~e~~~eAl~~GA~DYL~K 135 (632)
.+.+.+.++++.||+.++.=
T Consensus 196 ~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 196 HSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp CSHHHHHHHHTTCCSEEEEC
T ss_pred CCHHHHHHHHHCCCCEEEEc
Confidence 88999999999999988754
No 232
>3rf0_A Exopolyphosphatase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, hydrolase; HET: MSE; 1.80A {Yersinia pestis}
Probab=31.30 E-value=14 Score=35.84 Aligned_cols=63 Identities=10% Similarity=-0.088 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhhhhh-hcCCCcccc--ccccccccccCcCcce-ee---------eeccC-CCCChHHHHHHHH
Q 006774 266 SHLQKFRLYLKRLNGVSQ-QGGITNSFC--APIETNVKLGSLGRFD-IQ---------ALAAS-GQIPPQTLAALHA 328 (632)
Q Consensus 266 SHLqRvr~ylk~L~~~A~-~~Gls~~~~--e~i~~AspLHDiGKi~-i~---------iL~Kp-GkL~~ee~~imk~ 328 (632)
.|-+||..++..|..... ..++++..- ..+..|+-|||||..- .. |.+.+ .-++.+|...+-.
T Consensus 22 ~ha~~V~~~A~~Lf~~l~~~~~l~~~~~~~~lL~~Aa~LHdIG~~I~~~~~hkHs~Yii~n~~l~Gfs~~e~~~lA~ 98 (209)
T 3rf0_A 22 EQARRVLETTEQLYTQWLAQNTKLVQPQLEALLKWAAMLHEVGLSINHSGMHRHSAYILQNTNLPGFNQEQQTLLAT 98 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHTTGGGGTCSTTHHHHHHHHHHHSCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcccccCcccchHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 456666666655533222 356666666 8899999999999873 21 11111 1257777777766
No 233
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=30.85 E-value=56 Score=30.67 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCC--CCHHHHHHHHhcc-CCCcEEE--EecCCCHHHHHHHHhcCCcEEEeCCCCH
Q 006774 65 QAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIM--MSADGRVSAVMRGIRHGACDYLIKPIRE 139 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~MPd--mdGleLL~~Lr~~-~~iPIII--LSa~~d~e~~~eAl~~GA~DYL~KP~~~ 139 (632)
+.+++++.++.....+|+|-+- +|- ..|+++++.+|.. +++||.+ +........+..+.++||+..+.-....
T Consensus 11 ~~~~~~~~~~~~~~~~diie~G--~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~ 88 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDIIEVG--TPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTD 88 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEEEEC--HHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CHHHHHHHHHHhhcCccEEEeC--cHHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCC
Confidence 3445555544322124543332 232 3478889999765 6788754 2333333337888899999887754443
Q ss_pred -HHHHHHHHH
Q 006774 140 -EELKNIWQH 148 (632)
Q Consensus 140 -eeL~~~L~~ 148 (632)
+.+...++.
T Consensus 89 ~~~~~~~~~~ 98 (211)
T 3f4w_A 89 VLTIQSCIRA 98 (211)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 344444443
No 234
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=30.42 E-value=2.4e+02 Score=26.89 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHcCCCceEE-EEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 65 QAAVALDILRERKGCFDVV-LSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLV-ILDi~MPdm---dGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+..+..+.+.+.. .|.+ +.|...... ..+++++.++...++|+++-..-.+.+.+.++++.||+..+.-
T Consensus 31 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSEIG--IDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHHcC--CCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4444444454432 5544 444432211 1356777887777899999877778888999999999987664
No 235
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=30.30 E-value=1.4e+02 Score=28.91 Aligned_cols=69 Identities=13% Similarity=0.182 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHcCCCce-EEEEecCCC---CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 65 QAAVALDILRERKGCFD-VVLSDVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 65 sg~eALe~L~e~~~~pD-LVILDi~MP---dmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+..+..+.+.+.. +| |.+.|+.-. ...-++++++++....+|||+-.+-.+.+.+.++++.||+..+.=
T Consensus 36 ~~~~~a~~~~~~G--~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig 108 (247)
T 3tdn_A 36 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSIN 108 (247)
T ss_dssp EHHHHHHHHHHTT--CSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCS
T ss_pred CHHHHHHHHHHcC--CCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehh
Confidence 4445555554432 55 455676432 122378899998778999999888888888999999998876543
No 236
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=30.22 E-value=3.1e+02 Score=25.98 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhc---CCcEEEe
Q 006774 66 AAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH---GACDYLI 134 (632)
Q Consensus 66 g~eALe~L~e~~~~pD-LVILDi~MPdm---dGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~---GA~DYL~ 134 (632)
..+.++.+.+. .++ +++.+..-.+. -.++++++++...++|||.-.+-.+.+.+.++++. ||+.++.
T Consensus 151 ~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 151 LWDVLERLDSE--GCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp HHHHHHHHHHT--TCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred HHHHHHHHHhC--CCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 34554555443 266 44566543322 24788888876678999998888888888899988 9998764
No 237
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=29.98 E-value=1.8e+02 Score=29.83 Aligned_cols=66 Identities=8% Similarity=-0.018 Sum_probs=43.2
Q ss_pred EEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEE
Q 006774 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 60 V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DY 132 (632)
.+.+.+.+++.+.++. ..|+|.+|-.-| -++-+.++....-..|..|+.-+.+.+.+..+.|++.+
T Consensus 202 eVEv~tl~ea~eAl~a---GaD~I~LDn~~~----~~l~~av~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~I 267 (287)
T 3tqv_A 202 EVEVTNLDELNQAIAA---KADIVMLDNFSG----EDIDIAVSIARGKVALEVSGNIDRNSIVAIAKTGVDFI 267 (287)
T ss_dssp EEEESSHHHHHHHHHT---TCSEEEEESCCH----HHHHHHHHHHTTTCEEEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEeCCHHHHHHHHHc---CCCEEEEcCCCH----HHHHHHHHhhcCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 3478999999988864 389999996322 22222222211223556777778888888888998754
No 238
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=29.62 E-value=42 Score=34.54 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=44.9
Q ss_pred HHHHHHHHhccCCCcEEEEe--cCCCHHHHHHHHhcCCcEEEeC-----CCCHHHHHHHHHHHHHhh
Q 006774 94 GFKLLEHIGLEMDLPVIMMS--ADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVRKR 153 (632)
Q Consensus 94 GleLL~~Lr~~~~iPIIILS--a~~d~e~~~eAl~~GA~DYL~K-----P~~~eeL~~~L~~vlr~~ 153 (632)
.++++++++....+|||++. +-.+.+.+.++++.|+++.+.= .-++......+..++..+
T Consensus 186 d~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~ 252 (291)
T 3o07_A 186 PVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHF 252 (291)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhc
Confidence 37888888777889998873 3346888899999999998654 345777777777776654
No 239
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=29.59 E-value=44 Score=31.33 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCC--CCHHHHHHHHhcc-CCCcEEE--EecCCCHHHHHHHHhcCCcEEEeCCCCH
Q 006774 65 QAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIM--MSADGRVSAVMRGIRHGACDYLIKPIRE 139 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~MPd--mdGleLL~~Lr~~-~~iPIII--LSa~~d~e~~~eAl~~GA~DYL~KP~~~ 139 (632)
+.+++++.++......| ++++.++- .+|.++++.|+.. ++.|+++ .........+..+.++||+....-+...
T Consensus 11 ~~~~~~~~~~~~~~~v~--~iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~ 88 (207)
T 3ajx_A 11 STEAALELAGKVAEYVD--IIELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSAD 88 (207)
T ss_dssp CHHHHHHHHHHHGGGCS--EEEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CHHHHHHHHHHhhccCC--EEEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCC
Confidence 45556665554321123 35554431 3567788888754 3778775 3332123346778899999887666544
Q ss_pred -HHHHHHHH
Q 006774 140 -EELKNIWQ 147 (632)
Q Consensus 140 -eeL~~~L~ 147 (632)
+.+..+++
T Consensus 89 ~~~~~~~~~ 97 (207)
T 3ajx_A 89 DSTIAGAVK 97 (207)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 44444433
No 240
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=29.16 E-value=2.1e+02 Score=28.10 Aligned_cols=105 Identities=24% Similarity=0.354 Sum_probs=59.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIII 111 (632)
++++|+.+.+. +.++..++..+ -.|......++..+++.. .|++++-... +.-|..+++.+. ..+|||.
T Consensus 229 ~~l~i~G~g~~--~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~~-e~~~~~~~Ea~a--~G~Pvi~ 299 (374)
T 2iw1_A 229 TLLFVVGQDKP--RKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQ-EAAGIVLLEAIT--AGLPVLT 299 (374)
T ss_dssp EEEEEESSSCC--HHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSC-CSSCHHHHHHHH--HTCCEEE
T ss_pred eEEEEEcCCCH--HHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEecccc-CCcccHHHHHHH--CCCCEEE
Confidence 46666665432 33444444332 133333333344444433 4666664332 333566666663 3578886
Q ss_pred EecCCCHHHHHHHHhcCCcEEEeC-CCCHHHHHHHHHHHHH
Q 006774 112 MSADGRVSAVMRGIRHGACDYLIK-PIREEELKNIWQHVVR 151 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~K-P~~~eeL~~~L~~vlr 151 (632)
...... .+.+..|..+++.. |.+.++|.+++..++.
T Consensus 300 ~~~~~~----~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 300 TAVCGY----AHYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp ETTSTT----THHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred ecCCCc----hhhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 543222 23455677889987 8999999999998875
No 241
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=28.99 E-value=1.3e+02 Score=29.65 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=38.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHH
Q 006774 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 143 (632)
Q Consensus 80 pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~ 143 (632)
+++|=+. +-.-++++.++.|+....-.+|-.-.--+.+.+.+++++||+ |+.-|....++.
T Consensus 39 i~~iEvt--~~t~~a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~-fivsP~~~~evi 99 (217)
T 3lab_A 39 VHLLEVT--LRTEAGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQ-FIVSPGLTPELI 99 (217)
T ss_dssp CCEEEEE--TTSTTHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCS-EEEESSCCHHHH
T ss_pred CCEEEEe--CCCccHHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCC-EEEeCCCcHHHH
Confidence 4444443 334468888888865433345555555678889999999997 555674434443
No 242
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=28.93 E-value=1.6e+02 Score=27.89 Aligned_cols=67 Identities=12% Similarity=0.120 Sum_probs=44.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEEcCHHHHHHHHHHc------------C-CCceEEEEecCCCCCCHHH
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRER------------K-GCFDVVLSDVHMPDMDGFK 96 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~--V-~~a~sg~eALe~L~e~------------~-~~pDLVILDi~MPdmdGle 96 (632)
+.+|..||-++...+..+..+...++. + ....+..+.+..+... . ..+|+|++|...+ +-.+
T Consensus 85 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~--~~~~ 162 (239)
T 2hnk_A 85 DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE--NYPN 162 (239)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG--GHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHH--HHHH
Confidence 568999999999999999988876542 3 3566776655544321 1 3599999996433 2234
Q ss_pred HHHHH
Q 006774 97 LLEHI 101 (632)
Q Consensus 97 LL~~L 101 (632)
+++.+
T Consensus 163 ~l~~~ 167 (239)
T 2hnk_A 163 YYPLI 167 (239)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44544
No 243
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=28.82 E-value=4.2e+02 Score=26.17 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=35.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 80 pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.|++++.- .|+ +++.+ ...+|+|+.....+... .++.| .+++.. .+.++|..++.+++.
T Consensus 275 ad~~v~~S-----~g~-~lEA~--a~G~PvI~~~~~~~~~~---~~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 275 SLLLVTDS-----GGL-QEEGA--ALGVPVVVLRNVTERPE---GLKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp EEEEEESC-----HHH-HHHHH--HTTCCEEECSSSCSCHH---HHHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred CcEEEECC-----cCH-HHHHH--HcCCCEEeccCCCcchh---hhcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 46666542 344 44544 35789887543333322 24455 467774 489999999988874
No 244
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=28.81 E-value=35 Score=32.07 Aligned_cols=76 Identities=9% Similarity=0.167 Sum_probs=45.1
Q ss_pred cE-EEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEe-c-CCCCC---CH--HHHHHHHhccC
Q 006774 34 LR-VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-V-HMPDM---DG--FKLLEHIGLEM 105 (632)
Q Consensus 34 lr-VLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILD-i-~MPdm---dG--leLL~~Lr~~~ 105 (632)
|| |+|||........+...|++.|..+......+..++.+.... +|.||+- = ..+.. .+ .++++++ ..
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~--~dglil~gG~~~~~~~~~~~~~~~~i~~~--~~ 76 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERID--PDRLIISPGPGTPEKREDIGVSLDVIKYL--GK 76 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHC--CSEEEECCCSSCTTSHHHHTTHHHHHHHH--TT
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCC--CCEEEECCCCCChhhhhhhhHHHHHHHHh--cC
Confidence 45 999998776666788889888888776665432233333323 7888872 1 11221 11 2444443 34
Q ss_pred CCcEEEEe
Q 006774 106 DLPVIMMS 113 (632)
Q Consensus 106 ~iPIIILS 113 (632)
..||+-+.
T Consensus 77 ~~PvLGIC 84 (195)
T 1qdl_B 77 RTPILGVC 84 (195)
T ss_dssp TSCEEEET
T ss_pred CCcEEEEe
Confidence 68888765
No 245
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=28.68 E-value=2.8e+02 Score=27.46 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=29.7
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 105 ~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
..+|+|+....... .+.++.| .+++..| +.++|.+++..++.
T Consensus 300 ~G~PvI~~~~~~~~---~e~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 300 LGKPVLVMRDTTER---PEAVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp GTCCEEEESSCCSC---HHHHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred cCCCEEEccCCCCc---chhhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 46898876432332 2335668 8899988 99999999988875
No 246
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=28.42 E-value=72 Score=32.29 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=47.3
Q ss_pred CCcEEEEEeCC-----HHHHHHHHHHHHhCC-CeEEEEcCHH-----HHHHHHHHcCCCceEEEEecCCCCCCHH--H-H
Q 006774 32 AGLRVLVVDDD-----ITCLRILEQMLRRCL-YNVTTCSQAA-----VALDILRERKGCFDVVLSDVHMPDMDGF--K-L 97 (632)
Q Consensus 32 ~glrVLIVDDd-----~~ir~~L~~lL~~~g-y~V~~a~sg~-----eALe~L~e~~~~pDLVILDi~MPdmdGl--e-L 97 (632)
+.+|||||.-. +.....|..+|++.+ |+|....+.. +.+. ..-..+|+||++..+...+-- + +
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~---~~L~~~D~vV~~~~~~~l~~~~~~~l 79 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV---LDFSPYQLVVLDYNGDSWPEETNRRF 79 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC---CCCTTCSEEEECCCSSCCCHHHHHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh---hhhhcCCEEEEeCCCCcCCHHHHHHH
Confidence 45899999863 566788999999887 9998877631 2221 112359999988765443321 1 2
Q ss_pred HHHHhccCCCcEEEE
Q 006774 98 LEHIGLEMDLPVIMM 112 (632)
Q Consensus 98 L~~Lr~~~~iPIIIL 112 (632)
.+.++ ....+|.+
T Consensus 80 ~~yV~--~Ggglv~~ 92 (281)
T 4e5v_A 80 LEYVQ--NGGGVVIY 92 (281)
T ss_dssp HHHHH--TTCEEEEE
T ss_pred HHHHH--cCCCEEEE
Confidence 22232 35566665
No 247
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=27.97 E-value=1.5e+02 Score=30.20 Aligned_cols=93 Identities=10% Similarity=0.018 Sum_probs=56.0
Q ss_pred EEEEeCCHHHH----HHHHHHHHhCC--CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006774 36 VLVVDDDITCL----RILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (632)
Q Consensus 36 VLIVDDd~~ir----~~L~~lL~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~-~~~iP 108 (632)
+||-|++-... ..++..-+... .....+.+.+++.+.++. ..|+|++|-.-| .+-.+.++.++. .+.+
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a---GaD~I~LDn~~~-~~~~~~v~~l~~~~~~v- 242 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAV-WQTQTAVQRRDSRAPTV- 242 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCH-HHHHHHHHHHHHHCTTC-
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-HHHHHHHHHhhccCCCe-
Confidence 67777664332 23333323233 234577889999888764 389999996332 222234444443 2233
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEEE
Q 006774 109 VIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 109 IIILSa~~d~e~~~eAl~~GA~DYL 133 (632)
.|..|+--+.+.+.+..+.|++.+.
T Consensus 243 ~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 243 MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 5556777777888888899987664
No 248
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=27.59 E-value=69 Score=30.87 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=38.1
Q ss_pred ceEEEEecCCCCCC-------HHHHHHHHhccC-CCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 80 FDVVLSDVHMPDMD-------GFKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 80 pDLVILDi~MPdmd-------GleLL~~Lr~~~-~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
.|.|+++-..|+.. +++.+++++... ++||++.-+-. .+.+.++++.||+.++.=
T Consensus 139 ~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~-~~ni~~~~~aGaD~vvvG 201 (228)
T 1h1y_A 139 VELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLG-PSTIDVAASAGANCIVAG 201 (228)
T ss_dssp CSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCS-TTTHHHHHHHTCCEEEES
T ss_pred CCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcC-HHHHHHHHHcCCCEEEEC
Confidence 79999987777532 456667776544 77877655443 456778888899988654
No 249
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=27.51 E-value=1.1e+02 Score=32.73 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=30.4
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhCCCeEEEEc---CHH----HHHHHHHHcCCCceEEEEec
Q 006774 33 GLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCS---QAA----VALDILRERKGCFDVVLSDV 87 (632)
Q Consensus 33 glrVLIVDDd~---~ir~~L~~lL~~~gy~V~~a~---sg~----eALe~L~e~~~~pDLVILDi 87 (632)
+.||++||-|+ ...+.+...-...+..+..+. +.. ++++.++.. .+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~--~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLK--FYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 78999999986 333333333333455555432 222 334444332 489999998
No 250
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=27.38 E-value=2.5e+02 Score=28.72 Aligned_cols=84 Identities=13% Similarity=0.117 Sum_probs=54.5
Q ss_pred EEEcCHHHHHHHHHHcCCCceEEEEecCC--CCC-CHHHHHHHHhccCCCcEEEEecCCCH-------------HHHHHH
Q 006774 61 TTCSQAAVALDILRERKGCFDVVLSDVHM--PDM-DGFKLLEHIGLEMDLPVIMMSADGRV-------------SAVMRG 124 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~M--Pdm-dGleLL~~Lr~~~~iPIIILSa~~d~-------------e~~~eA 124 (632)
+++.+.+.+....+... |-|=++-.+ ++. .++.+++.++...++||.++.-.... +.+..+
T Consensus 44 vc~~s~~~a~~A~~gGA---dRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~ 120 (287)
T 3iwp_A 44 VCVDSVESAVNAERGGA---DRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLA 120 (287)
T ss_dssp EEESSHHHHHHHHHHTC---SEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHhCC---CEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHH
Confidence 35778888888776543 434333333 333 36888998887778998887654433 466777
Q ss_pred HhcCCcEEEeCC------CCHHHHHHHHH
Q 006774 125 IRHGACDYLIKP------IREEELKNIWQ 147 (632)
Q Consensus 125 l~~GA~DYL~KP------~~~eeL~~~L~ 147 (632)
.++||++++.=- ++.+.++..+.
T Consensus 121 ~~~GAdGvVfG~L~~dg~iD~~~~~~Li~ 149 (287)
T 3iwp_A 121 KLYGADGLVFGALTEDGHIDKELCMSLMA 149 (287)
T ss_dssp HHTTCSEEEECCBCTTSCBCHHHHHHHHH
T ss_pred HHcCCCEEEEeeeCCCCCcCHHHHHHHHH
Confidence 899999987663 44555555544
No 251
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=27.26 E-value=70 Score=34.70 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=32.4
Q ss_pred CCcEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEc---CH----HHHHHHHHHcCCCceEEEEecC
Q 006774 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QA----AVALDILRERKGCFDVVLSDVH 88 (632)
Q Consensus 32 ~glrVLIVDDd~~---ir~~L~~lL~~~gy~V~~a~---sg----~eALe~L~e~~~~pDLVILDi~ 88 (632)
.+.+|++|+-|+. ..+.++.+-...+..+.... +. .++++.++.. .+|+||+|.-
T Consensus 127 ~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~--~~DvVIIDTa 191 (443)
T 3dm5_A 127 RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSK--GVDIIIVDTA 191 (443)
T ss_dssp TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHT--TCSEEEEECC
T ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 4678999997743 33444444444566555432 22 3455555543 3999999963
No 252
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=27.18 E-value=1.1e+02 Score=31.34 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=34.9
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHH-HhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRG-IRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 80 pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eA-l~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.|++++--...+.-|.-+++.+ ...+|||.-+...+.....+. .+.| ++..+-+.++|.+++..++.
T Consensus 278 aDv~vl~ss~~e~gg~~~lEAm--A~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~ 345 (374)
T 2xci_A 278 GKIAIVGGTFVNIGGHNLLEPT--CWGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLS 345 (374)
T ss_dssp EEEEEECSSSSSSCCCCCHHHH--TTTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHH
T ss_pred CCEEEECCcccCCCCcCHHHHH--HhCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHh
Confidence 4665552211111233344444 246888852222332332222 3444 46666789999999988875
No 253
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=26.77 E-value=1e+02 Score=25.97 Aligned_cols=55 Identities=27% Similarity=0.329 Sum_probs=33.9
Q ss_pred cccchHHHHHHHHHHHHHhcc---ccc--c--------HHHHHHHh-cCCCc--ChHHHHHHHHHHHHHHH
Q 006774 222 RVVWSVELHQQFVSAVNQLGI---DKA--V--------PKRILELM-NVPGL--TRENVASHLQKFRLYLK 276 (632)
Q Consensus 222 rv~wt~eLh~~Fl~av~~Lgi---dkA--~--------pK~ILelM-~v~gl--tre~taSHLqRvr~ylk 276 (632)
.-+|..+|...|.+++...-- .+- + -+-|-+.+ ...|. ++-+|+||+|-++....
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~ 76 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS 76 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence 458999999999999987732 111 0 01111211 13344 44589999999887654
No 254
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=26.74 E-value=2.4e+02 Score=26.93 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=44.1
Q ss_pred CcEEEEEe------CCHHHHHHHHHHHHhCCCeEEEE----cCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006774 33 GLRVLVVD------DDITCLRILEQMLRRCLYNVTTC----SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 33 glrVLIVD------Dd~~ir~~L~~lL~~~gy~V~~a----~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr 102 (632)
+-||++|+ |.......++..|+..|+++... .+.++..+.+++ .|.|++ |+.+-+.+++.++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 56899997 44456777888999999988777 477776666654 477775 6666666666654
No 255
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=26.60 E-value=1.1e+02 Score=29.85 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=35.1
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 94 GleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
.++++++++...++||++-.+-.+.+.+.+++++||+.++.=
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 557888887666899998888777899999999999999864
No 256
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=26.48 E-value=72 Score=30.04 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=33.8
Q ss_pred CceEEEEecCCCCCCH-------HHHHHHHhcc-----CCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 79 CFDVVLSDVHMPDMDG-------FKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 79 ~pDLVILDi~MPdmdG-------leLL~~Lr~~-----~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
..|.|+++...|+.+| ++.++.++.. .++||++.-+ -..+...++.++|++.++.
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GG-I~~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGG-VDNKTIRACYEAGANVFVA 197 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESS-CCTTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECc-CCHHHHHHHHHcCCCEEEE
Confidence 3688888776665443 3444555421 2577665444 3356667788889998754
No 257
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=26.44 E-value=11 Score=41.15 Aligned_cols=100 Identities=10% Similarity=-0.110 Sum_probs=52.8
Q ss_pred ChhHHHHHHHcCCC--------CCCC-cccccccCCC----------------CCCCCcEEEE--EeCCHHHHHHHHHHH
Q 006774 1 MAALQRIVQSSGGS--------GYGS-SRAADVAVPD----------------QFPAGLRVLV--VDDDITCLRILEQML 53 (632)
Q Consensus 1 Lai~~~lv~~~GG~--------G~gs-~~~~~~~~p~----------------~~p~glrVLI--VDDd~~ir~~L~~lL 53 (632)
|++++++++.|||. +.|. ++.+.++++. ..+.|.+|.| .++.......+..+|
T Consensus 113 L~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~~~~e~~~~I~~~l 192 (471)
T 1mu5_A 113 VKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIYEYI 192 (471)
T ss_dssp HHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEEEcCCcchHHHHHHHHH
Confidence 57999999999994 4444 5555544331 1234445443 333333323444444
Q ss_pred Hh-----CCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006774 54 RR-----CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 54 ~~-----~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr 102 (632)
.. -++.+....++.+++...+....-|+. .+..||.++|+++...++
T Consensus 193 ~~~al~~p~v~i~l~~~~~~~~~~~r~~~~lp~~--~~~~~p~~~G~~l~~~~~ 244 (471)
T 1mu5_A 193 KRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPKP--PQEVKPHPYGVDREEIKI 244 (471)
T ss_dssp HHHHHHCTTCEEEEECTTCCEEEECCCCCCCCCC--CCCCCCCGGGCCHHHHHH
T ss_pred HHHHhHCCCeEEEEEECCceEEEecccccccCCc--cceeecCCCchhHHHHHH
Confidence 43 245666555544433322211111232 566789999988776664
No 258
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=26.42 E-value=1.4e+02 Score=31.81 Aligned_cols=65 Identities=22% Similarity=0.149 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCCceEEEEecCCCCCC-HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 67 AVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 67 ~eALe~L~e~~~~pDLVILDi~MPdmd-GleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
.+.++.+.+.. +|+|++|.....-. -.+++++++...++|||+= .-...+.+..+.++||+..+.
T Consensus 146 ~e~~~~lveaG--vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g-~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVG-NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHHT--CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEe-ecCCHHHHHHHHHcCCCEEEE
Confidence 44455555444 89999997654322 3678888876557888752 224567788889999998877
No 259
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=26.41 E-value=2.4e+02 Score=27.77 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=33.3
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 95 leLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
.+++++++...++||++=.+-.+.+.+.+++..||+.++.=
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 67888888766889877666666888888899999999875
No 260
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=26.17 E-value=3.3e+02 Score=23.90 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=44.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy--~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~L 101 (632)
.+|..||-++...+..+..+...+. .+ ....+..+.+..+......+|+|++|.-....+..++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence 5899999999999988888876553 23 35566666554333223469999998542233445556655
No 261
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=25.94 E-value=65 Score=31.95 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCceEEEEecCCC--CCCHHHHHHHHhccCCCcEEEEecC-CCHHHHHHHHhcCCcEEEe
Q 006774 67 AVALDILRERKGCFDVVLSDVHMP--DMDGFKLLEHIGLEMDLPVIMMSAD-GRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 67 ~eALe~L~e~~~~pDLVILDi~MP--dmdGleLL~~Lr~~~~iPIIILSa~-~d~e~~~eAl~~GA~DYL~ 134 (632)
.++++.+.+.. .|+|.+-+.-. -.+-+++++++|. .++|+|+++.. ... ..|++++|.
T Consensus 23 ~~~~~~l~~~G--aD~IelG~S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n~i-------~~gvDg~ii 83 (234)
T 2f6u_A 23 DEIIKAVADSG--TDAVMISGTQNVTYEKARTLIEKVSQ-YGLPIVVEPSDPSNV-------VYDVDYLFV 83 (234)
T ss_dssp HHHHHHHHTTT--CSEEEECCCTTCCHHHHHHHHHHHTT-SCCCEEECCSSCCCC-------CCCSSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECCCCCCCHHHHHHHHHHhcC-CCCCEEEecCCcchh-------hcCCCEEEE
No 262
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=25.78 E-value=3.8e+02 Score=27.27 Aligned_cols=105 Identities=17% Similarity=0.127 Sum_probs=59.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEE-Ec-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTT-CS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~-a~-sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPI 109 (632)
+.+||.||.--..-...+...+...++++.. +. +.+.+.+...+.. ..-+.. |- +.+-..+++-+
T Consensus 25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~--~~~~~~-------~~----~~ll~~~~vD~ 91 (361)
T 3u3x_A 25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYA--DARRIA-------TA----EEILEDENIGL 91 (361)
T ss_dssp -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSS--SCCEES-------CH----HHHHTCTTCCE
T ss_pred cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcC--CCcccC-------CH----HHHhcCCCCCE
Confidence 3589999987644333444445556777653 33 3333444433321 111121 22 22222345666
Q ss_pred EEEecCC--CHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHH
Q 006774 110 IMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (632)
Q Consensus 110 IILSa~~--d~e~~~eAl~~GA~DYL~KP~--~~eeL~~~L~~v 149 (632)
|+++... ..+.+..|+++|..=|+-||+ +.++..+.++.+
T Consensus 92 V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 135 (361)
T 3u3x_A 92 IVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQ 135 (361)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 6665433 356678899999999999994 677877776655
No 263
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=25.77 E-value=17 Score=39.43 Aligned_cols=45 Identities=7% Similarity=-0.153 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCC-ccccccccccccccCcCccee
Q 006774 262 ENVASHLQKFRLYLKRLNGVSQQGGIT-NSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 262 e~taSHLqRvr~ylk~L~~~A~~~Gls-~~~~e~i~~AspLHDiGKi~i 309 (632)
...-.|..+++.+++.| |+..|.. ....+.+..+.-||||||+-+
T Consensus 277 ~~~w~hs~~~A~~a~~L---A~~~~~~~~~~~~~aflaGLLhDIGkl~l 322 (457)
T 3mem_A 277 VDYWQQAIWQAQSAGIL---ASMMPRGQRPLFGLAYLAGLLHNFGHLVL 322 (457)
T ss_dssp CCHHHHHHHHHHHHHHH---HHHSCGGGCCCHHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHhcccccCCCHHHHHHHHHHHHhhHHHH
Confidence 46889999999999999 9988875 345666778889999999976
No 264
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=25.72 E-value=3.3e+02 Score=23.61 Aligned_cols=74 Identities=14% Similarity=0.019 Sum_probs=48.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC-eE-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy-~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPI 109 (632)
.+.+|..+|-++...+..+..+...+. .+ ....+..+. +.. ..+|+|+++.. .+-.++++.+...++-.+
T Consensus 56 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~--~~~D~i~~~~~---~~~~~~l~~~~~~~gG~l 127 (183)
T 2yxd_A 56 RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV---LDK--LEFNKAFIGGT---KNIEKIIEILDKKKINHI 127 (183)
T ss_dssp TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH---GGG--CCCSEEEECSC---SCHHHHHHHHHHTTCCEE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc---ccC--CCCcEEEECCc---ccHHHHHHHHhhCCCCEE
Confidence 356899999999999999988877653 23 345566552 222 35999999865 555667777743344444
Q ss_pred EEEe
Q 006774 110 IMMS 113 (632)
Q Consensus 110 IILS 113 (632)
++.+
T Consensus 128 ~~~~ 131 (183)
T 2yxd_A 128 VANT 131 (183)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4433
No 265
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=25.67 E-value=27 Score=35.57 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCcEEEEEeCCH---HHHHHHHHHHHhCCCeEEEEc---CHH----HHHHHHHHcCCCceEEEEec
Q 006774 32 AGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCS---QAA----VALDILRERKGCFDVVLSDV 87 (632)
Q Consensus 32 ~glrVLIVDDd~---~ir~~L~~lL~~~gy~V~~a~---sg~----eALe~L~e~~~~pDLVILDi 87 (632)
.+.+|+++|-|. ...+.++.+.+..+..+.... +.. ++++.++.. .+|+||+|.
T Consensus 125 ~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~--~~D~ViIDT 188 (297)
T 1j8m_F 125 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSE--KMEIIIVDT 188 (297)
T ss_dssp TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhC--CCCEEEEeC
Confidence 356899999983 444445554444566655432 333 344444323 489999997
No 266
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.53 E-value=16 Score=39.39 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhhhhhcC-----CCccccccccccccccCcCccee
Q 006774 266 SHLQKFRLYLKRLNGVSQQGG-----ITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 266 SHLqRvr~ylk~L~~~A~~~G-----ls~~~~e~i~~AspLHDiGKi~i 309 (632)
.|...|...++.+ +..++ +++...+.+..|+-|||||+--+
T Consensus 58 ~HSLgV~~la~~l---~~~l~~~~~~~~~~d~~~~~~AaLlHDiGh~Pf 103 (410)
T 2q14_A 58 QHSLGAFYLMSEA---ITQLTSKGNFIFDSEAEAVQAAILLHDIGHGPF 103 (410)
T ss_dssp HHHHHHHHHHHHH---HHHHHHTTCCCCHHHHHHHHHHHHHTTTTCCTT
T ss_pred ehHHHHHHHHHHH---HHHHHhcCCCCCHHHHHHHHHHHHHhccCCCcc
Confidence 4555666666666 55444 56666677888999999999765
No 267
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=25.37 E-value=69 Score=27.46 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=45.2
Q ss_pred CCCcEEEEEeCC----HHHHHHHHHHHHhCCCeE-EEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 006774 31 PAGLRVLVVDDD----ITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (632)
Q Consensus 31 p~glrVLIVDDd----~~ir~~L~~lL~~~gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~ 105 (632)
|+.+|||+|-.. ......+++.+...++++ +.+.+..++-..+ ..+|+||+-..+... ++-++..-...
T Consensus 2 ~~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~----~~~D~Ii~t~~l~~~--~~~~~~~~~~~ 75 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVV----DRFDVVLLAPQSRFN--KKRLEEITKPK 75 (109)
T ss_dssp CCCEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHT----TTCSEEEECSCCSSH--HHHHHHHHHHH
T ss_pred CCceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhc----CCCCEEEECCccHHH--HHHHHHHhccc
Confidence 344788888654 256667778887767643 2333333433322 248999998766542 33333322234
Q ss_pred CCcEEEEec
Q 006774 106 DLPVIMMSA 114 (632)
Q Consensus 106 ~iPIIILSa 114 (632)
++||+.+..
T Consensus 76 ~~pv~~I~~ 84 (109)
T 2l2q_A 76 GIPIEIINT 84 (109)
T ss_dssp TCCEEECCH
T ss_pred CCCEEEECh
Confidence 789988764
No 268
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=25.24 E-value=2.2e+02 Score=30.09 Aligned_cols=113 Identities=13% Similarity=0.023 Sum_probs=61.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH-hccCCCc
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYN---VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLP 108 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~---V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~L-r~~~~iP 108 (632)
-+|..||-++...+.+++.++..+.+ +. ...|+.+.+.. .....||+|++|- ++.. .++++.. +....--
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~--~~~~~fD~V~lDP--~g~~-~~~l~~a~~~Lk~gG 152 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRK--EWGFGFDYVDLDP--FGTP-VPFIESVALSMKRGG 152 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHS--CCSSCEEEEEECC--SSCC-HHHHHHHHHHEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHH--hhCCCCcEEEECC--CcCH-HHHHHHHHHHhCCCC
Confidence 57999999999999999999987652 43 45566554430 2223599999997 3321 2344433 2111223
Q ss_pred EEEEecCCCHH----HHHHHH-hcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 109 VIMMSADGRVS----AVMRGI-RHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 109 IIILSa~~d~e----~~~eAl-~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
++++|...... ....++ ++|+.-.-.+-+....++..+..+.+
T Consensus 153 ll~~t~t~~~~l~g~~~~~~~rkYg~~p~r~~~~~e~~~r~~L~~~~~ 200 (392)
T 3axs_A 153 ILSLTATDTAPLSGTYPKTCMRRYMARPLRNEFKHEVGIRILIKKVIE 200 (392)
T ss_dssp EEEEEECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHHHHHHHHHHHHH
T ss_pred EEEEEecchhhhccccHHHHHHHhCCcccccccccchhHHHHHHHHHH
Confidence 66666633221 222333 56765211111123444445555444
No 269
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=25.16 E-value=5.2e+02 Score=26.55 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=60.9
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHh--------CCCeEE-EEc-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHH
Q 006774 29 QFPAGLRVLVVDDDITCLRILEQMLRR--------CLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL 98 (632)
Q Consensus 29 ~~p~glrVLIVDDd~~ir~~L~~lL~~--------~gy~V~-~a~-sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL 98 (632)
.+.+++||-||.--..-+..+..+.+. .+.++. .|. +.+.|-+..++.. ..-+..| --+++
T Consensus 22 ~Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~--~~~~y~d-------~~~ll 92 (412)
T 4gqa_A 22 SMSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLG--AEKAYGD-------WRELV 92 (412)
T ss_dssp ---CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHT--CSEEESS-------HHHHH
T ss_pred cccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcC--CCeEECC-------HHHHh
Confidence 356679999998765444333333221 134454 343 3333444444332 2223322 12232
Q ss_pred HHHhccCCCcEEEEecCC--CHHHHHHHHhcCCcEEEeCC--CCHHHHHHHHHHHHH
Q 006774 99 EHIGLEMDLPVIMMSADG--RVSAVMRGIRHGACDYLIKP--IREEELKNIWQHVVR 151 (632)
Q Consensus 99 ~~Lr~~~~iPIIILSa~~--d~e~~~eAl~~GA~DYL~KP--~~~eeL~~~L~~vlr 151 (632)
..+++-+|+++... ..+.+..|+++|..=|+-|| .+.++..++++.+-+
T Consensus 93 ----~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~ 145 (412)
T 4gqa_A 93 ----NDPQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARR 145 (412)
T ss_dssp ----HCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHH
T ss_pred ----cCCCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHH
Confidence 23556566665443 35678899999999999999 477888877766543
No 270
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=24.98 E-value=1.2e+02 Score=31.09 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=46.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccC--CCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 80 FDVVLSDVHMPDMDGFKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 80 pDLVILDi~MPdmdGleLL~~Lr~~~--~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
.++|.+|..- .....++++++++.. .+|+++=-+-.+.+.+.+++++||+..+.-.
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 6899999755 334568999997655 8999988888899999999999999998876
No 271
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=24.92 E-value=5e+02 Score=26.05 Aligned_cols=106 Identities=10% Similarity=0.090 Sum_probs=61.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EEcC-HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~-~gy~V~-~a~s-g~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iP 108 (632)
+.+||.||.--..-...+..+.+. .++++. .+.. .+.+.+...+. .+-..+ |--++++ .+++-
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~----~~~~~~------~~~~ll~----~~~~D 77 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT----GARGHA------SLTDMLA----QTDAD 77 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH----CCEEES------CHHHHHH----HCCCS
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc----CCceeC------CHHHHhc----CCCCC
Confidence 468999998876655556555554 367765 3443 33333333332 221111 2223333 24555
Q ss_pred EEEEecCCC--HHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 006774 109 VIMMSADGR--VSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (632)
Q Consensus 109 IIILSa~~d--~e~~~eAl~~GA~DYL~KP~--~~eeL~~~L~~vlr 151 (632)
+|+++.... .+.+..++++|..=++.||+ +.++..+.++.+-+
T Consensus 78 ~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~ 124 (354)
T 3q2i_A 78 IVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADK 124 (354)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHH
Confidence 666654433 45677899999999999994 67777776665543
No 272
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=24.41 E-value=4e+02 Score=27.74 Aligned_cols=111 Identities=12% Similarity=0.095 Sum_probs=69.7
Q ss_pred cEEEEEeC--CH------------HHHHHHHHHHHhCCC--eEEEE--cCHHHHHHHHHHcCCCceEEEEecCCCCCCHH
Q 006774 34 LRVLVVDD--DI------------TCLRILEQMLRRCLY--NVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95 (632)
Q Consensus 34 lrVLIVDD--d~------------~ir~~L~~lL~~~gy--~V~~a--~sg~eALe~L~e~~~~pDLVILDi~MPdmdGl 95 (632)
.+++|+.+ .+ ...+.++..+++.+. .|... -+.++..+++.......|++++-... +.-|+
T Consensus 295 ~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~-Eg~~~ 373 (499)
T 2r60_A 295 NLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFY-EPFGL 373 (499)
T ss_dssp EEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSC-BCCCS
T ss_pred eEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECccc-CCCCc
Confidence 46788887 22 116677777776543 24333 33566667665420001887764332 33456
Q ss_pred HHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 96 KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 96 eLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
-+++.+. ..+|||... . ....+.+..|..+++..|-+.++|..++..++.
T Consensus 374 ~~lEAma--~G~PvI~s~-~---~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 374 APVEAMA--SGLPAVVTR-N---GGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp HHHHHHH--TTCCEEEES-S---BHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred HHHHHHH--cCCCEEEec-C---CCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 6677664 467887643 2 234566777888999999999999999988874
No 273
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=24.38 E-value=23 Score=33.39 Aligned_cols=44 Identities=16% Similarity=0.038 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhhh-----cCCCccccccccccccccCcCccee
Q 006774 260 TRENVASHLQKFRLYLKRLNGVSQQ-----GGITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 260 tre~taSHLqRvr~ylk~L~~~A~~-----~Gls~~~~e~i~~AspLHDiGKi~i 309 (632)
..++++.|.-||..++..| +.. .+++. +.+..++-+||++.+-+
T Consensus 29 ~~esvaeHs~rVa~~A~~l---a~~~~~~~~~~d~---~~v~~~aLlHD~~E~~~ 77 (177)
T 2cqz_A 29 EPESIADHSFGVAFITLVL---ADVLEKRGKRIDV---EKALKMAIVHDLAEAII 77 (177)
T ss_dssp SCCBHHHHHHHHHHHHHHH---HHHHHHTTCCCCH---HHHHHHHHHTTTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HHHHHHcCCCCCH---HHHHHHHHHhchHHHHc
Confidence 5678999999999999999 554 34433 33445678999987754
No 274
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=24.29 E-value=58 Score=32.47 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=37.3
Q ss_pred CceEEEEecCCC--CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCC
Q 006774 79 CFDVVLSDVHMP--DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 79 ~pDLVILDi~MP--dmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
..|+|++-.... ..+-++++++||. .++|+|++.... +.+..|+|.|+.-.
T Consensus 36 GtDaI~vGgs~gvt~~~~~~~v~~ik~-~~~Piil~p~~~------~~~~~gaD~il~ps 88 (235)
T 3w01_A 36 QTDAIMIGGTDDVTEDNVIHLMSKIRR-YPLPLVLEISNI------ESVMPGFDFYFVPT 88 (235)
T ss_dssp SCSEEEECCSSCCCHHHHHHHHHHHTT-SCSCEEEECCCS------TTCCTTCSEEEEEE
T ss_pred CCCEEEECCcCCcCHHHHHHHHHHhcC-cCCCEEEecCCH------HHhhcCCCEEEEcc
Confidence 479999987542 2346788888887 899999998854 22456999988753
No 275
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=24.28 E-value=4.1e+02 Score=26.64 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=55.8
Q ss_pred HHHHHHHHHhCCCeE-EEEcCHHHHHHHHHHcCCCceEEEEecC-CC--CCCHHHHHHHHh-cc-CCCcEEEEecCCCHH
Q 006774 46 LRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-MP--DMDGFKLLEHIG-LE-MDLPVIMMSADGRVS 119 (632)
Q Consensus 46 r~~L~~lL~~~gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~-MP--dmdGleLL~~Lr-~~-~~iPIIILSa~~d~e 119 (632)
...+.......|..+ ..+.+.+|+...+.. .+|+|=+.-. +- ..| ++....|. .- .++++|.-++-.+.+
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip~~~~vIaesGI~t~e 233 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVN-LAVSERLAKMAPSDRLLVGESGIFTHE 233 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBC-THHHHHHHHHSCTTSEEEEESSCCSHH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCC-hHHHHHHHHhCCCCCcEEEECCCCCHH
Confidence 334444445567765 467888887665532 4787765522 11 112 34444442 22 368899889988999
Q ss_pred HHHHHHhcCCcEEEeC
Q 006774 120 AVMRGIRHGACDYLIK 135 (632)
Q Consensus 120 ~~~eAl~~GA~DYL~K 135 (632)
.+.++.++|++++|+-
T Consensus 234 dv~~l~~~Ga~gvLVG 249 (272)
T 3tsm_A 234 DCLRLEKSGIGTFLIG 249 (272)
T ss_dssp HHHHHHTTTCCEEEEC
T ss_pred HHHHHHHcCCCEEEEc
Confidence 9999999999999874
No 276
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=24.06 E-value=2e+02 Score=28.08 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=51.9
Q ss_pred HHHhCCCeEEEEcC---HHHHHHHHHHcCCCceEEEEecCCCCCCH-------HHHHHHHhccC-CCcEEEEecCCCHHH
Q 006774 52 MLRRCLYNVTTCSQ---AAVALDILRERKGCFDVVLSDVHMPDMDG-------FKLLEHIGLEM-DLPVIMMSADGRVSA 120 (632)
Q Consensus 52 lL~~~gy~V~~a~s---g~eALe~L~e~~~~pDLVILDi~MPdmdG-------leLL~~Lr~~~-~iPIIILSa~~d~e~ 120 (632)
.+++.|..+..+-+ ..+.++.+... ..+|+|++=..-|+.+| ++-++++|... +++ |.+.+--+.+.
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~-I~VdGGI~~~t 186 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLN-IQVDGGLNIET 186 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCE-EEEESSCCHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCe-EEEECCCCHHH
Confidence 56667777665443 33444443321 13798877666676544 55566666433 444 44566677888
Q ss_pred HHHHHhcCCcEEEeCC
Q 006774 121 VMRGIRHGACDYLIKP 136 (632)
Q Consensus 121 ~~eAl~~GA~DYL~KP 136 (632)
+.++.++||+-++.=.
T Consensus 187 i~~~~~aGAd~~V~Gs 202 (227)
T 1tqx_A 187 TEISASHGANIIVAGT 202 (227)
T ss_dssp HHHHHHHTCCEEEESH
T ss_pred HHHHHHcCCCEEEEeH
Confidence 8999999999886543
No 277
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=24.00 E-value=1.3e+02 Score=30.00 Aligned_cols=83 Identities=13% Similarity=0.103 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCC----CCCC-HHHHHHHHhccC-CCcEEE-EecCCCHHHHHHHHhcCCcEEEeCCC
Q 006774 65 QAAVALDILRERKGCFDVVLSDVHM----PDMD-GFKLLEHIGLEM-DLPVIM-MSADGRVSAVMRGIRHGACDYLIKPI 137 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~M----Pdmd-GleLL~~Lr~~~-~iPIII-LSa~~d~e~~~eAl~~GA~DYL~KP~ 137 (632)
+..++++.+.+.. .|.+=+|++- |... |.++++.||... +.|+.+ +--.+-..++..+.++||+.+..-..
T Consensus 41 ~L~~~i~~l~~~G--~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~E 118 (246)
T 3inp_A 41 RLGDDVKAVLAAG--ADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPE 118 (246)
T ss_dssp GHHHHHHHHHHTT--CCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGG
T ss_pred hHHHHHHHHHHcC--CCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccc
Confidence 4567777776643 6666666632 3333 889999998654 777655 33333455777788999987666554
Q ss_pred CHHHHHHHHHHH
Q 006774 138 REEELKNIWQHV 149 (632)
Q Consensus 138 ~~eeL~~~L~~v 149 (632)
..+.+.+.++.+
T Consensus 119 a~~~~~~~i~~i 130 (246)
T 3inp_A 119 ASEHIDRSLQLI 130 (246)
T ss_dssp GCSCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 444566666554
No 278
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=23.98 E-value=97 Score=29.52 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=44.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH
Q 006774 31 PAGLRVLVVDDDITCLRILEQMLRRCLYN---VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 31 p~glrVLIVDDd~~ir~~L~~lL~~~gy~---V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~L 101 (632)
+.+.+|..||-++...+..++.++..++. +. ...++.+.+..+. ...||+|++|.... +-.++++.+
T Consensus 79 ~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~--~~~fD~V~~d~~~~--~~~~~l~~~ 149 (221)
T 3dr5_A 79 ADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA--NDSYQLVFGQVSPM--DLKALVDAA 149 (221)
T ss_dssp CTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC--TTCEEEEEECCCTT--THHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc--CCCcCeEEEcCcHH--HHHHHHHHH
Confidence 33568999999999999999999887654 43 4555555443321 23599999997543 333455544
No 279
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=23.93 E-value=1.8e+02 Score=27.78 Aligned_cols=77 Identities=16% Similarity=0.299 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHcCCCce-EEEEecC----CCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhc-----C-CcEEE
Q 006774 65 QAAVALDILRERKGCFD-VVLSDVH----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-----G-ACDYL 133 (632)
Q Consensus 65 sg~eALe~L~e~~~~pD-LVILDi~----MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~-----G-A~DYL 133 (632)
+..+....+.+. .++ +++.++. +.+. .++++++++...++|||...+-.+.+.+.++++. | +++.+
T Consensus 145 ~~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKEY--GLEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTT--TCCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecccccCCcC-CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 445544444443 366 5555542 2222 3888999876668999998888888889999888 9 98875
Q ss_pred e------CCCCHHHHHH
Q 006774 134 I------KPIREEELKN 144 (632)
Q Consensus 134 ~------KP~~~eeL~~ 144 (632)
. .+++..++++
T Consensus 222 vgsal~~~~~~~~~~~~ 238 (241)
T 1qo2_A 222 VGRAFLEGILTVEVMKR 238 (241)
T ss_dssp ECHHHHTTSSCHHHHHH
T ss_pred eeHHHHcCCCCHHHHHH
Confidence 4 3566665544
No 280
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=23.46 E-value=58 Score=32.69 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=37.4
Q ss_pred HHHHHHHHhccCCCcEEEEecC------CCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 006774 94 GFKLLEHIGLEMDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 94 GleLL~~Lr~~~~iPIIILSa~------~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr~ 152 (632)
.+++++++|.. +|+|+|+-. .-.....++.++|+++.|.-.+..+|... +....++
T Consensus 78 ~~~~~~~~r~~--~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~-~~~~~~~ 139 (252)
T 3tha_A 78 VFELLARIKTK--KALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDD-LIKECER 139 (252)
T ss_dssp HHHHHHHCCCS--SEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHH-HHHHHHH
T ss_pred HHHHHHHHhcC--CCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHH-HHHHHHH
Confidence 35555555533 899998753 33456677889999999998788777444 4444433
No 281
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=23.22 E-value=5.7e+02 Score=25.49 Aligned_cols=104 Identities=12% Similarity=0.084 Sum_probs=57.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIII 111 (632)
.+||.||.--..-...+..+.+..++++. .+....+..+.+.+. +.+-..+ + .+.+-..+++-+|+
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~---~g~~~~~------~----~~~~l~~~~~D~V~ 70 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEA---NGAEAVA------S----PDEVFARDDIDGIV 70 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHT---TTCEEES------S----HHHHTTCSCCCEEE
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH---cCCceeC------C----HHHHhcCCCCCEEE
Confidence 57888888866555555544443466665 344333333333332 1211111 1 12222234455555
Q ss_pred EecCC--CHHHHHHHHhcCCcEEEeCC--CCHHHHHHHHHHH
Q 006774 112 MSADG--RVSAVMRGIRHGACDYLIKP--IREEELKNIWQHV 149 (632)
Q Consensus 112 LSa~~--d~e~~~eAl~~GA~DYL~KP--~~~eeL~~~L~~v 149 (632)
++... ..+.+..++++|..=++.|| .+.++..+.+..+
T Consensus 71 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a 112 (344)
T 3euw_A 71 IGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKI 112 (344)
T ss_dssp ECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHH
T ss_pred EeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHH
Confidence 55433 34567788999999999999 4667776666544
No 282
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=23.09 E-value=3.9e+02 Score=28.12 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=39.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---C------eE-EEEcCHHHHHHHHHHcCCCceEEEEecCC
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCL---Y------NV-TTCSQAAVALDILRERKGCFDVVLSDVHM 89 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~g---y------~V-~~a~sg~eALe~L~e~~~~pDLVILDi~M 89 (632)
-+|.+||-|+.+.+..++.+.... + .+ ....|+.+.++.+.+....||+||+|.--
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 277 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCC
Confidence 579999999999999988875321 1 12 35678887776543223469999999754
No 283
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=23.07 E-value=6.2e+02 Score=25.85 Aligned_cols=76 Identities=8% Similarity=0.112 Sum_probs=48.4
Q ss_pred CeEEEEcCHHHHHHHHHHcCCCceEEEEecCCC--CCCH----------HHHHHHH----h-ccCCCcEEEEe-cCCCHH
Q 006774 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMP--DMDG----------FKLLEHI----G-LEMDLPVIMMS-ADGRVS 119 (632)
Q Consensus 58 y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MP--dmdG----------leLL~~L----r-~~~~iPIIILS-a~~d~e 119 (632)
+.+..+.+.++|..+.... ||+|++..-+- +.-| .+.++.+ + .++++.|+.-. +-...+
T Consensus 165 ~Ti~~v~~~eeA~amA~ag---pDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpe 241 (286)
T 2p10_A 165 LTTPYVFSPEDAVAMAKAG---ADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPE 241 (286)
T ss_dssp EECCEECSHHHHHHHHHHT---CSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHH
T ss_pred eEEEecCCHHHHHHHHHcC---CCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHH
Confidence 4566888999999887643 89999976532 2212 3344444 1 24555333333 235788
Q ss_pred HHHHHHhc--CCcEEEeCC
Q 006774 120 AVMRGIRH--GACDYLIKP 136 (632)
Q Consensus 120 ~~~eAl~~--GA~DYL~KP 136 (632)
.+..+++. |+++|+.-.
T Consensus 242 Dv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 242 DARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp HHHHHHHHCTTCCEEEESH
T ss_pred HHHHHHhcCCCccEEEeeh
Confidence 88999998 999999864
No 284
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=23.07 E-value=1.9e+02 Score=27.37 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=44.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEEcCHHHHHH-HHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy--~V-~~a~sg~eALe-~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr 102 (632)
+.+|..||-++...+..+..++..+. .+ ....+..+.+. .+ ...||+|++|...+ +-.++++.+.
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~fD~V~~~~~~~--~~~~~l~~~~ 163 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN---DKVYDMIFIDAAKA--QSKKFFEIYT 163 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT---TSCEEEEEEETTSS--SHHHHHHHHG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc---cCCccEEEEcCcHH--HHHHHHHHHH
Confidence 56899999999999999999987664 23 34556655443 33 23599999996533 3345566653
No 285
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=22.75 E-value=3.3e+02 Score=23.38 Aligned_cols=106 Identities=13% Similarity=0.159 Sum_probs=64.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEE-EcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC-cEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTT-CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL-PVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~gy~V~~-a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~i-PII 110 (632)
.++++|+.+.+. ...++..++..+..+.. .-+.++..+++. ..|++++-.. .+.-|+-+++.+. ..+ |||
T Consensus 32 ~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~----~adv~v~ps~-~e~~~~~~~Eama--~G~vPvi 103 (166)
T 3qhp_A 32 DIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEILK----TCTLYVHAAN-VESEAIACLEAIS--VGIVPVI 103 (166)
T ss_dssp GEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHHT----TCSEEEECCC-SCCCCHHHHHHHH--TTCCEEE
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHHH----hCCEEEECCc-ccCccHHHHHHHh--cCCCcEE
Confidence 578899987654 46667777766655443 222455555553 2688887543 3344667777764 455 888
Q ss_pred EEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 111 ILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
..+..... .+.+..+. ++..|-+.++|...+..++.
T Consensus 104 ~~~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 104 ANSPLSAT---RQFALDER--SLFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp ECCTTCGG---GGGCSSGG--GEECTTCHHHHHHHHHHHHH
T ss_pred eeCCCCch---hhhccCCc--eEEcCCCHHHHHHHHHHHHh
Confidence 73322222 12223333 37788999999999988875
No 286
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=22.62 E-value=5.9e+02 Score=25.48 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=58.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC--CCeEE-EEcC-HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVT-TCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~--gy~V~-~a~s-g~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~i 107 (632)
..+||.||.--..........|... ++++. .+.. .+.+.+..++.. ..-+..| --+++ ..+++
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~--~~~~~~~-------~~~ll----~~~~v 83 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG--NPAVFDS-------YEELL----ESGLV 83 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS--SCEEESC-------HHHHH----HSSCC
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhC--CCcccCC-------HHHHh----cCCCC
Confidence 4689999987733333333344443 46654 3433 333333333321 1112222 12222 23455
Q ss_pred cEEEEecCC--CHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHH
Q 006774 108 PVIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (632)
Q Consensus 108 PIIILSa~~--d~e~~~eAl~~GA~DYL~KP~--~~eeL~~~L~~vl 150 (632)
-+|+++... ..+.+..|+++|..=|+.||+ +.++..+.++.+-
T Consensus 84 D~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 130 (340)
T 1zh8_A 84 DAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSE 130 (340)
T ss_dssp SEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 555555433 356788899999999999995 7788777776553
No 287
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=22.58 E-value=85 Score=31.19 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCceEEEEecCCC-CCC-HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 67 AVALDILRERKGCFDVVLSDVHMP-DMD-GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 67 ~eALe~L~e~~~~pDLVILDi~MP-dmd-GleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
.++++.+.+.. .|+|.+-..-. ..+ .+++++++|. .++|||+++...+.- ..|++.||.
T Consensus 23 ~~~~~~l~~~G--aD~ielG~S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i------~~G~dg~ii 83 (240)
T 1viz_A 23 DEQLEILCESG--TDAVIIGGSDGVTEDNVLRMMSKVRR-FLVPCVLEVSAIEAI------VPGFDLYFI 83 (240)
T ss_dssp HHHHHHHHTSC--CSEEEECC----CHHHHHHHHHHHTT-SSSCEEEECSCGGGC------CSCCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECCCCCCCHHHHHHHHHHhhC-cCCCEEEecCccccc------cCCCCEEEE
No 288
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=22.58 E-value=3.3e+02 Score=27.62 Aligned_cols=93 Identities=11% Similarity=0.094 Sum_probs=56.6
Q ss_pred EEEEEeCCHHHHH----HHHHHHHhCCC---eEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006774 35 RVLVVDDDITCLR----ILEQMLRRCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (632)
Q Consensus 35 rVLIVDDd~~ir~----~L~~lL~~~gy---~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~i 107 (632)
-+||.||+..+.. .++..-+..+. ....+.+.+++.+.+... .|.|.+|-.-|. .--+.++.++ ..+
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~aG---aD~I~ld~~~~~-~~k~av~~v~--~~i 241 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEAG---ADLILLDNFPLE-ALREAVRRVG--GRV 241 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHHT---CSEEEEESCCHH-HHHHHHHHHT--TSS
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcC---CCEEEECCCCHH-HHHHHHHHhC--CCC
Confidence 3788888776533 23333233322 234778899998888643 799999964331 1112222232 356
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 108 PVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 108 PIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
|++. ++--+.+.+.+..+.|++.+-.
T Consensus 242 pi~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 242 PLEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp CEEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred eEEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 7665 5556788888888999986643
No 289
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=22.58 E-value=5.1e+02 Score=26.20 Aligned_cols=107 Identities=13% Similarity=0.210 Sum_probs=60.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHH-HhCCCeEEE-EcCH-HHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006774 33 GLRVLVVDDDITCLRILEQML-RRCLYNVTT-CSQA-AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL-~~~gy~V~~-a~sg-~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPI 109 (632)
.+||.||.--..-...+..+. ...++++.. +... +.+.+...+.. ++.-..+ +--++++ .+++-+
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g--~~~~~~~------~~~~ll~----~~~~D~ 90 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYA--IEAKDYN------DYHDLIN----DKDVEV 90 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHT--CCCEEES------SHHHHHH----CTTCCE
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhC--CCCeeeC------CHHHHhc----CCCCCE
Confidence 579999998876666666555 234677653 3322 22333333221 1111111 2222222 334555
Q ss_pred EEEecCC--CHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 006774 110 IMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (632)
Q Consensus 110 IILSa~~--d~e~~~eAl~~GA~DYL~KP~--~~eeL~~~L~~vlr 151 (632)
|+++... ..+.+..++++|..=|+.||+ +.++..+.++.+-+
T Consensus 91 V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~ 136 (357)
T 3ec7_A 91 VIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQK 136 (357)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHH
Confidence 5554433 356677899999999999994 67787777765543
No 290
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=22.43 E-value=1.4e+02 Score=31.80 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=55.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcC-HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcE
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPV 109 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~s-g~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr-~~~~iPI 109 (632)
.+..|++||.++...+.++ ..++.+....- -.+.|+.+. -...|+||+-+.- +..-+.++..++ ..++++|
T Consensus 26 ~g~~vvvId~d~~~v~~~~----~~g~~vi~GDat~~~~L~~ag--i~~A~~viv~~~~-~~~n~~i~~~ar~~~p~~~I 98 (413)
T 3l9w_A 26 SGVKMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAG--AAKAEVLINAIDD-PQTNLQLTEMVKEHFPHLQI 98 (413)
T ss_dssp TTCCEEEEECCHHHHHHHH----HTTCCCEESCTTCHHHHHHTT--TTTCSEEEECCSS-HHHHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEEEECCHHHHHHHH----hCCCeEEEcCCCCHHHHHhcC--CCccCEEEECCCC-hHHHHHHHHHHHHhCCCCeE
Confidence 3567999999987655543 34666543221 123333321 2247888886532 122344455554 3567888
Q ss_pred EEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 110 IMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 110 IILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
|+.+. +........++||+..+.-
T Consensus 99 iara~--~~~~~~~L~~~Gad~Vi~~ 122 (413)
T 3l9w_A 99 IARAR--DVDHYIRLRQAGVEKPERE 122 (413)
T ss_dssp EEEES--SHHHHHHHHHTTCSSCEET
T ss_pred EEEEC--CHHHHHHHHHCCCCEEECc
Confidence 88775 4455666778999976653
No 291
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=22.41 E-value=6.1e+02 Score=25.55 Aligned_cols=106 Identities=16% Similarity=0.111 Sum_probs=62.0
Q ss_pred CCcEEEEEeCCHHHHH-HHHHHHHhCCCeEE-EEc-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006774 32 AGLRVLVVDDDITCLR-ILEQMLRRCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~-~L~~lL~~~gy~V~-~a~-sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iP 108 (632)
+.+||.||.--..-.. .+..+.+..++++. .+. +.+.+.+...+.. ...+ .|+ +.+-..+++-
T Consensus 26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g--~~~~-~~~-----------~~ll~~~~~D 91 (350)
T 3rc1_A 26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFG--GEPV-EGY-----------PALLERDDVD 91 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHC--SEEE-ESH-----------HHHHTCTTCS
T ss_pred CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcC--CCCc-CCH-----------HHHhcCCCCC
Confidence 3589999998876653 44444443367765 333 4444444444322 2222 221 2222234555
Q ss_pred EEEEecCC--CHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 006774 109 VIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (632)
Q Consensus 109 IIILSa~~--d~e~~~eAl~~GA~DYL~KP~--~~eeL~~~L~~vlr 151 (632)
+|+++... ..+.+..++++|..=++-||+ +.++..+.++.+-+
T Consensus 92 ~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~ 138 (350)
T 3rc1_A 92 AVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARE 138 (350)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 66655433 356678889999999999994 67787777765543
No 292
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=22.35 E-value=5.8e+02 Score=25.28 Aligned_cols=106 Identities=11% Similarity=0.159 Sum_probs=57.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHH-HhCCCeEE-EEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006774 32 AGLRVLVVDDDITCLRILEQML-RRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL-~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPI 109 (632)
..+||.||.--..-+..+..+. ...++++. .+....+..+.+.+.. ..+-+..| --++ + ..+++-+
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~-g~~~~~~~-------~~~~---l-~~~~~D~ 74 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL-GVETTYTN-------YKDM---I-DTENIDA 74 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT-CCSEEESC-------HHHH---H-TTSCCSE
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh-CCCcccCC-------HHHH---h-cCCCCCE
Confidence 4589999988655554445444 23466654 3443333343333321 12222222 1122 2 2234556
Q ss_pred EEEecCC--CHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHH
Q 006774 110 IMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (632)
Q Consensus 110 IILSa~~--d~e~~~eAl~~GA~DYL~KP~--~~eeL~~~L~~v 149 (632)
|+++... ..+.+..+++.|..=++.||+ +.++..++++.+
T Consensus 75 V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a 118 (346)
T 3cea_A 75 IFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVI 118 (346)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHH
T ss_pred EEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 6655433 346677889999888899995 566666555443
No 293
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=21.92 E-value=6.3e+02 Score=25.57 Aligned_cols=88 Identities=18% Similarity=0.033 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhCCCeEE--EE---cCHHHHHHHHHHcCCCceEEEEecC---------------------CCCCCHHHHH
Q 006774 45 CLRILEQMLRRCLYNVT--TC---SQAAVALDILRERKGCFDVVLSDVH---------------------MPDMDGFKLL 98 (632)
Q Consensus 45 ir~~L~~lL~~~gy~V~--~a---~sg~eALe~L~e~~~~pDLVILDi~---------------------MPdmdGleLL 98 (632)
..+.++.+-+.....|. .+ .+.++|..+... ..|.|++.-+ ..+....+.+
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~---Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l 242 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEA---GAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL 242 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHH---TCSEEEEEC---------------CCGGGGTTCSCCHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHc---CCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHH
Confidence 34445554444444333 23 456666555443 3788777522 1134566777
Q ss_pred HHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 99 EHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 99 ~~Lr~~-~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+.++.. .++|||.-.+-.+.+.+.+++..||+....=
T Consensus 243 ~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 243 AEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp HHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 777543 4799999999899999999999999988764
No 294
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=21.78 E-value=3.4e+02 Score=28.22 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=57.8
Q ss_pred HHHHHHHHhCCCeEE--EEcCHHHHHHHHHHcCCCceEEEEecCCC-----CCCHHHHHHHHhcc--CCCcEEEEecCCC
Q 006774 47 RILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLE--MDLPVIMMSADGR 117 (632)
Q Consensus 47 ~~L~~lL~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MP-----dmdGleLL~~Lr~~--~~iPIIILSa~~d 117 (632)
+.++.+-+..+..|. .+.+.++|..+... ..|.|.+.-+-. ...-++.+..++.. .++|||.-.+-.+
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~ 291 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQH---GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRR 291 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHHT---TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCS
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHHc---CCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 445555555454443 45677777666543 389888854221 12356777777542 2799999988889
Q ss_pred HHHHHHHHhcCCcEEEeC
Q 006774 118 VSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 118 ~e~~~eAl~~GA~DYL~K 135 (632)
...+.+++..||+....=
T Consensus 292 ~~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 292 GTDVFKALALGAAGVFIG 309 (370)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEeec
Confidence 999999999999988654
No 295
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=21.22 E-value=3.1e+02 Score=29.46 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=60.4
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHHhC-CCeE--EEEcCHHHHHHHHHHcCCCceEEEEecCCC-----------CCCH
Q 006774 33 GLRVLVVDDD----ITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMDG 94 (632)
Q Consensus 33 glrVLIVDDd----~~ir~~L~~lL~~~-gy~V--~~a~sg~eALe~L~e~~~~pDLVILDi~MP-----------dmdG 94 (632)
+..+++++-. ....+.++.+-+.. +..| ....+.++|..+.+ . .+|.|.+...-. +...
T Consensus 249 Gvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~-~--G~d~I~v~~~~G~~~~~~~~~~~g~p~ 325 (494)
T 1vrd_A 249 GVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIK-A--GADAVKVGVGPGSICTTRVVAGVGVPQ 325 (494)
T ss_dssp TCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHH-T--TCSEEEECSSCSTTCHHHHHHCCCCCH
T ss_pred CCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHH-c--CCCEEEEcCCCCccccccccCCCCccH
Confidence 3455555322 33455555555544 3433 35677777765553 2 378888743211 1233
Q ss_pred HHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHhcCCcEEEe
Q 006774 95 FKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 95 leLL~~Lr---~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
++.+..+. ...++|||.-.+-.+...+.+++..||+....
T Consensus 326 ~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 326 LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 44444443 23579999988888899999999999987764
No 296
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=20.81 E-value=5.2e+02 Score=25.93 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=57.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCeEEE-EcC-HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNVTT-CSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~-gy~V~~-a~s-g~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iP 108 (632)
+.+||.||.--..-...+. .|... ++++.. +.. .+.+.+...... ... -.|--++++ ..++-
T Consensus 4 ~~~~vgiiG~G~~g~~~~~-~l~~~~~~~lvav~d~~~~~~~~~~~~~g--~~~--------~~~~~~~l~----~~~~D 68 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMAD-AYTKSEKLKLVTCYSRTEDKREKFGKRYN--CAG--------DATMEALLA----REDVE 68 (354)
T ss_dssp CCEEEEEECCSHHHHHHHH-HHTTCSSEEEEEEECSSHHHHHHHHHHHT--CCC--------CSSHHHHHH----CSSCC
T ss_pred CcceEEEEccCHHHHHHHH-HHHhCCCcEEEEEECCCHHHHHHHHHHcC--CCC--------cCCHHHHhc----CCCCC
Confidence 3578888887765444443 44443 666553 332 333333333221 110 112222222 33455
Q ss_pred EEEEecCC--CHHHHHHHHhcCCcEEEeCC--CCHHHHHHHHHHHHH
Q 006774 109 VIMMSADG--RVSAVMRGIRHGACDYLIKP--IREEELKNIWQHVVR 151 (632)
Q Consensus 109 IIILSa~~--d~e~~~eAl~~GA~DYL~KP--~~~eeL~~~L~~vlr 151 (632)
+|+++... ..+.+..++++|..=++.|| .+.++..+.++.+-+
T Consensus 69 ~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (354)
T 3db2_A 69 MVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKE 115 (354)
T ss_dssp EEEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHH
Confidence 55554433 35667788999999999999 467777776665543
No 297
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=20.74 E-value=99 Score=29.51 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=35.8
Q ss_pred CceEEEEecCCCCCC-------HHHHHHHHhccC-----CCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 79 CFDVVLSDVHMPDMD-------GFKLLEHIGLEM-----DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 79 ~pDLVILDi~MPdmd-------GleLL~~Lr~~~-----~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
..|.|+++-..|+.+ +++.+++++... ++|+++.-+- ..+.+.+++++||+.+..=
T Consensus 140 ~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI-~~~n~~~~~~aGad~vvvg 207 (230)
T 1rpx_A 140 AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGV-GPKNAYKVIEAGANALVAG 207 (230)
T ss_dssp TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSC-CTTTHHHHHHHTCCEEEES
T ss_pred hCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEEC
Confidence 368888887666433 345566665322 6777655443 3566667888899987654
No 298
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=20.39 E-value=6.6e+02 Score=25.16 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeC
Q 006774 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+..+.++.+.+.. +|+|.+....| .+++++++.. .++++... ...+....+.+.|++.++.-
T Consensus 84 ~~~~~~~~~~~~g--~d~V~~~~g~p----~~~~~~l~~~-gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIEAG--IRVVETAGNDP----GEHIAEFRRH-GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESCC----HHHHHHHHHT-TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHhcC--CCEEEEcCCCc----HHHHHHHHHc-CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 3456777776654 89999987665 5778888654 67777543 34566778889999988873
No 299
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=20.30 E-value=57 Score=31.64 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=44.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEEcCHHHHHHHHHHc--CCCceEEEEecCCCCCCHHHHHHHH
Q 006774 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRER--KGCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 32 ~glrVLIVDDd~~ir~~L~~lL~~~gy--~V-~~a~sg~eALe~L~e~--~~~pDLVILDi~MPdmdGleLL~~L 101 (632)
.+.+|.-||-++...+..+..++..+. .+ ....++.+.+..+... ...||+|++|... .+-..+++.+
T Consensus 84 ~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~ 156 (242)
T 3r3h_A 84 DDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADK--TNYLNYYELA 156 (242)
T ss_dssp TTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCG--GGHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCCh--HHhHHHHHHH
Confidence 356899999998888878888876654 23 3566777766554321 2359999999752 2233444444
No 300
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=20.25 E-value=3.8e+02 Score=22.41 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=58.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006774 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~ir~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILS 113 (632)
+-|||+..|....+..+.+-+....++.++.+..+.-.++.+.+ +....+.|+++.
T Consensus 3 lyvliisndkklieearkmaekanlelrtvktedelkkyleefr------------------------kesqnikvlilv 58 (110)
T 2kpo_A 3 LYVLIISNDKKLIEEARKMAEKANLELRTVKTEDELKKYLEEFR------------------------KESQNIKVLILV 58 (110)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHTCEEEECCSHHHHHHHHHHHT------------------------SSTTSEEEEEEE
T ss_pred EEEEEEcCcHHHHHHHHHHHHhcCceeeeeccHHHHHHHHHHHH------------------------hhccCeEEEEEE
Confidence 45899999999888888888888889989888888777665432 122345555544
Q ss_pred cCCCH-HHHHH-HHhcCCcEEEeCCCCHHHHHHHHHHH
Q 006774 114 ADGRV-SAVMR-GIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 114 a~~d~-e~~~e-Al~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
+.+.. +.+.+ |-+..++---.|--++++-++.++..
T Consensus 59 sndeeldkakelaqkmeidvrtrkvtspdeakrwikef 96 (110)
T 2kpo_A 59 SNDEELDKAKELAQKMEIDVRTRKVTSPDEAKRWIKEF 96 (110)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECSSHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHhhceeeeeeecCChHHHHHHHHHH
Confidence 43322 11212 22455555555666677766655544
No 301
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=20.17 E-value=4.8e+02 Score=26.47 Aligned_cols=104 Identities=11% Similarity=0.088 Sum_probs=58.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCeEEE-EcCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006774 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVTT-CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~ir~~L~~lL~~~-gy~V~~-a~sg~eALe~L~e~~~~pDLVILDi~MPdmdGleLL~~Lr~~~~iPII 110 (632)
.+||.||.--..-...+. .|... ++++.. +....+..+.... +.+-.. .|--++++ .+++-+|
T Consensus 5 ~~~vgiiG~G~~g~~~~~-~l~~~~~~~l~av~d~~~~~~~~a~~----~g~~~~------~~~~~ll~----~~~~D~V 69 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVT-LASAADNLEVHGVFDILAEKREAAAQ----KGLKIY------ESYEAVLA----DEKVDAV 69 (359)
T ss_dssp CEEEEEECCSHHHHHHHH-HHHTSTTEEEEEEECSSHHHHHHHHT----TTCCBC------SCHHHHHH----CTTCCEE
T ss_pred cCcEEEECcCHHHHHHHH-HHHhCCCcEEEEEEcCCHHHHHHHHh----cCCcee------CCHHHHhc----CCCCCEE
Confidence 478999888765554444 44443 666653 3333333333322 221110 12222322 3455555
Q ss_pred EEecCC--CHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 006774 111 MMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (632)
Q Consensus 111 ILSa~~--d~e~~~eAl~~GA~DYL~KP~--~~eeL~~~L~~vlr 151 (632)
+++... ..+.+..++++|..=++.||+ +.++..+.++.+-+
T Consensus 70 ~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~ 114 (359)
T 3e18_A 70 LIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKR 114 (359)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHH
Confidence 555433 356678899999999999994 67777777765543
No 302
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=20.14 E-value=2e+02 Score=28.89 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=42.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Q 006774 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 80 pDLVILDi~MPdmdGleLL~~Lr~~~~iPIIILSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.|++++-.. .+.-|.-+++.+. ..+|||...... ..+.+..|-.+++..|-+.++|.+++..++.
T Consensus 285 adv~v~ps~-~e~~~~~~~EAma--~G~PvI~~~~~~----~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 285 SDLMLLLSE-KESFGLVLLEAMA--CGVPCIGTRVGG----IPEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CSEEEECCS-CCSCCHHHHHHHH--TTCCEEEECCTT----STTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEeccc-cCCCchHHHHHHh--cCCCEEEecCCC----hHHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 467766433 2333566666663 467887643222 2234556778999999999999999988875
No 303
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=20.11 E-value=6.6e+02 Score=25.05 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=31.5
Q ss_pred CCCcEEEEecCC--CHHHHHHHHhcCCcEEEeCC--CCHHHHHHHHHHHHH
Q 006774 105 MDLPVIMMSADG--RVSAVMRGIRHGACDYLIKP--IREEELKNIWQHVVR 151 (632)
Q Consensus 105 ~~iPIIILSa~~--d~e~~~eAl~~GA~DYL~KP--~~~eeL~~~L~~vlr 151 (632)
+++-+|+++... ..+.+..++++|..=++.|| .+.++..+.++.+-+
T Consensus 65 ~~~D~V~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~ 115 (344)
T 3mz0_A 65 ENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIK 115 (344)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 344455554432 34567788999999899999 467787777665543
No 304
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=20.01 E-value=35 Score=36.30 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCccccccccccccccCcCccee
Q 006774 266 SHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 266 SHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (632)
.|..-|....+.| +..+|+++ +.+..|+-|||||+.-+
T Consensus 78 ~HSl~Va~iar~i---a~~l~l~~---~l~~~a~LlHDiGh~PF 115 (376)
T 2dqb_A 78 THTLEVAQVSRSI---ARALGLNE---DLTEAIALSHDLGHPPF 115 (376)
T ss_dssp HHHHHHHHHHHHH---HHHTTCCH---HHHHHHHHHTTTTCCSS
T ss_pred HHHHHHHHHHHHH---HHHcCCCH---HHHHHHHHHHhcCCCcc
Confidence 4888888889988 88899885 45667788999998743
Done!