Query 006775
Match_columns 632
No_of_seqs 600 out of 2527
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 14:18:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3437 Response regulator con 100.0 1.4E-34 3.1E-39 303.1 13.8 264 31-367 12-287 (360)
2 COG0745 OmpR Response regulato 99.8 3.8E-19 8.2E-24 180.4 16.2 119 34-155 1-121 (229)
3 COG4566 TtrR Response regulato 99.8 2.1E-19 4.5E-24 174.8 10.6 168 33-203 4-172 (202)
4 COG2197 CitB Response regulato 99.8 1.3E-18 2.8E-23 174.2 15.8 170 34-205 1-180 (211)
5 COG4565 CitB Response regulato 99.8 1.5E-17 3.3E-22 164.6 18.7 119 34-154 1-122 (224)
6 COG4753 Response regulator con 99.8 3E-18 6.6E-23 188.0 14.0 118 34-153 2-123 (475)
7 PRK15347 two component system 99.7 2.6E-16 5.6E-21 185.6 23.8 117 33-151 690-811 (921)
8 COG2204 AtoC Response regulato 99.7 5.5E-17 1.2E-21 178.2 16.8 120 33-154 4-124 (464)
9 PF00072 Response_reg: Respons 99.7 3.2E-16 6.8E-21 137.4 15.9 110 36-147 1-112 (112)
10 PRK10840 transcriptional regul 99.7 7.6E-16 1.6E-20 152.2 16.4 171 33-205 3-182 (216)
11 PRK11466 hybrid sensory histid 99.7 8.1E-16 1.8E-20 181.8 18.3 151 1-152 630-800 (914)
12 PRK10046 dpiA two-component re 99.7 4E-15 8.7E-20 148.7 19.7 121 31-153 2-125 (225)
13 PRK11091 aerobic respiration c 99.7 1.3E-15 2.9E-20 177.6 17.9 149 1-152 473-645 (779)
14 TIGR02956 TMAO_torS TMAO reduc 99.7 1.7E-15 3.7E-20 179.8 18.2 150 1-152 651-823 (968)
15 PRK10841 hybrid sensory kinase 99.6 3.9E-15 8.5E-20 177.7 19.7 119 33-153 801-920 (924)
16 PRK09959 hybrid sensory histid 99.6 4.6E-15 1E-19 180.5 18.4 149 1-151 904-1075(1197)
17 PRK09483 response regulator; P 99.6 2E-14 4.2E-19 139.7 18.5 169 34-204 2-179 (217)
18 PRK11107 hybrid sensory histid 99.6 7.9E-15 1.7E-19 172.8 18.2 118 33-152 667-787 (919)
19 COG0784 CheY FOG: CheY-like re 99.6 3E-14 6.4E-19 127.9 17.0 119 32-151 4-125 (130)
20 PRK10360 DNA-binding transcrip 99.6 2E-14 4.3E-19 137.4 15.3 161 34-200 2-164 (196)
21 PRK09958 DNA-binding transcrip 99.6 5.3E-14 1.2E-18 135.3 18.3 166 34-201 1-171 (204)
22 PRK10336 DNA-binding transcrip 99.6 6.7E-14 1.5E-18 135.6 18.8 153 34-188 1-164 (219)
23 PRK10643 DNA-binding transcrip 99.6 8.1E-14 1.7E-18 135.0 18.9 118 34-153 1-119 (222)
24 PRK10529 DNA-binding transcrip 99.6 5.1E-14 1.1E-18 137.8 17.4 118 34-153 2-119 (225)
25 PRK11173 two-component respons 99.6 6.5E-14 1.4E-18 139.1 17.3 118 34-153 4-121 (237)
26 PLN03029 type-a response regul 99.6 5.5E-14 1.2E-18 141.6 16.8 122 32-153 7-149 (222)
27 COG3706 PleD Response regulato 99.6 4.3E-14 9.3E-19 154.5 17.2 122 32-155 131-255 (435)
28 PRK11517 transcriptional regul 99.6 1.3E-13 2.7E-18 134.3 18.4 118 34-153 1-118 (223)
29 PRK10430 DNA-binding transcrip 99.6 1.7E-13 3.7E-18 138.0 19.9 118 34-151 2-122 (239)
30 PRK11475 DNA-binding transcrip 99.6 2.5E-14 5.4E-19 143.1 13.6 156 46-205 3-166 (207)
31 PRK10816 DNA-binding transcrip 99.6 8.9E-14 1.9E-18 136.1 17.2 118 34-153 1-119 (223)
32 TIGR02154 PhoB phosphate regul 99.6 2.1E-13 4.5E-18 132.2 19.0 119 33-153 2-123 (226)
33 PRK10766 DNA-binding transcrip 99.6 1.2E-13 2.5E-18 134.9 17.1 118 34-153 3-120 (221)
34 PRK10955 DNA-binding transcrip 99.6 1.9E-13 4.2E-18 133.8 18.4 117 34-153 2-118 (232)
35 PRK09836 DNA-binding transcrip 99.6 1.4E-13 3.1E-18 135.0 17.3 117 34-152 1-118 (227)
36 TIGR03787 marine_sort_RR prote 99.5 4.2E-13 9.1E-18 131.5 19.3 117 35-153 2-121 (227)
37 PRK09935 transcriptional regul 99.5 4.9E-13 1.1E-17 128.4 19.1 167 33-201 3-177 (210)
38 PRK10161 transcriptional regul 99.5 2.9E-13 6.3E-18 133.0 17.3 117 34-152 3-122 (229)
39 PRK10701 DNA-binding transcrip 99.5 2.7E-13 5.9E-18 134.7 17.1 118 34-153 2-119 (240)
40 CHL00148 orf27 Ycf27; Reviewed 99.5 3.8E-13 8.3E-18 132.4 17.5 119 33-153 6-124 (240)
41 COG3947 Response regulator con 99.5 4E-14 8.6E-19 145.7 10.5 114 34-151 1-115 (361)
42 PRK13856 two-component respons 99.5 3.6E-13 7.8E-18 134.5 17.0 117 35-153 3-120 (241)
43 TIGR01387 cztR_silR_copR heavy 99.5 7.1E-13 1.5E-17 128.0 18.3 117 36-154 1-118 (218)
44 PRK15411 rcsA colanic acid cap 99.5 3.6E-13 7.7E-18 134.5 16.6 162 34-205 1-169 (207)
45 PRK09468 ompR osmolarity respo 99.5 5.3E-13 1.1E-17 132.3 17.1 119 33-153 5-124 (239)
46 PRK10100 DNA-binding transcrip 99.5 1.1E-13 2.4E-18 139.3 12.3 167 33-205 10-187 (216)
47 PRK11083 DNA-binding response 99.5 5.1E-13 1.1E-17 129.9 16.6 118 34-153 4-122 (228)
48 COG4567 Response regulator con 99.5 1.7E-13 3.6E-18 129.5 12.6 112 35-148 11-123 (182)
49 PRK13837 two-component VirA-li 99.5 5.7E-13 1.2E-17 157.4 18.9 150 1-153 643-815 (828)
50 KOG0519 Sensory transduction h 99.5 1.9E-13 4.2E-18 160.4 13.4 118 32-150 665-784 (786)
51 PRK15479 transcriptional regul 99.5 3.6E-12 7.9E-17 123.4 19.1 118 34-153 1-119 (221)
52 PRK15369 two component system 99.5 4.1E-12 9E-17 120.5 18.9 169 33-203 3-179 (211)
53 PRK10651 transcriptional regul 99.5 4.6E-12 9.9E-17 121.7 18.5 169 32-202 5-184 (216)
54 PRK11697 putative two-componen 99.4 2.1E-12 4.5E-17 128.6 16.3 115 34-152 2-118 (238)
55 PRK09390 fixJ response regulat 99.4 1.4E-12 3.1E-17 123.1 13.9 162 32-196 2-164 (202)
56 PRK10403 transcriptional regul 99.4 3.7E-12 8E-17 122.0 16.9 165 33-199 6-179 (215)
57 PRK14084 two-component respons 99.4 2.7E-12 5.9E-17 128.8 16.5 115 34-152 1-118 (246)
58 TIGR02875 spore_0_A sporulatio 99.4 3.1E-12 6.7E-17 130.1 16.6 118 33-152 2-124 (262)
59 PRK09581 pleD response regulat 99.4 9.6E-13 2.1E-17 141.7 12.7 118 32-152 154-274 (457)
60 PRK10710 DNA-binding transcrip 99.4 8.7E-12 1.9E-16 122.7 17.1 117 34-152 11-127 (240)
61 PRK10365 transcriptional regul 99.4 3E-12 6.5E-17 139.9 15.2 119 32-152 4-123 (441)
62 PRK13557 histidine kinase; Pro 99.4 6.6E-12 1.4E-16 138.2 17.8 150 1-151 362-534 (540)
63 PRK11361 acetoacetate metaboli 99.4 5.3E-12 1.2E-16 138.7 16.6 119 31-151 2-121 (457)
64 PRK10923 glnG nitrogen regulat 99.4 7.6E-12 1.6E-16 138.3 17.1 117 34-152 4-121 (469)
65 PRK15115 response regulator Gl 99.4 6.5E-12 1.4E-16 137.8 16.3 118 33-152 5-123 (444)
66 PLN03162 golden-2 like transcr 99.4 1.1E-12 2.3E-17 137.4 8.9 63 217-279 232-294 (526)
67 TIGR02915 PEP_resp_reg putativ 99.4 9.1E-12 2E-16 136.7 15.9 112 36-151 1-118 (445)
68 PRK12555 chemotaxis-specific m 99.4 1.2E-11 2.5E-16 131.7 15.7 115 34-150 1-128 (337)
69 PRK10610 chemotaxis regulatory 99.3 8.5E-11 1.8E-15 101.1 16.9 119 32-152 4-126 (129)
70 PRK13435 response regulator; P 99.3 3.8E-11 8.2E-16 110.8 15.6 117 33-154 5-123 (145)
71 TIGR01818 ntrC nitrogen regula 99.3 1.9E-11 4.1E-16 134.7 15.8 115 36-152 1-116 (463)
72 PRK09581 pleD response regulat 99.3 5.7E-11 1.2E-15 128.0 17.5 118 34-153 3-123 (457)
73 PRK00742 chemotaxis-specific m 99.3 7.2E-11 1.6E-15 126.3 16.4 104 33-138 3-110 (354)
74 COG2201 CheB Chemotaxis respon 99.3 4.7E-11 1E-15 127.5 13.2 104 33-138 1-108 (350)
75 PRK13558 bacterio-opsin activa 99.2 6.7E-11 1.5E-15 135.9 15.2 118 33-152 7-127 (665)
76 PRK09191 two-component respons 99.2 7.4E-10 1.6E-14 111.8 15.6 116 33-152 137-254 (261)
77 COG3707 AmiR Response regulato 99.1 6.8E-10 1.5E-14 109.2 12.4 119 33-153 5-124 (194)
78 cd00156 REC Signal receiver do 99.1 2.3E-09 4.9E-14 87.6 12.8 111 37-149 1-112 (113)
79 COG2206 c-di-GMP phosphodieste 99.0 9.8E-11 2.1E-15 125.7 3.3 73 258-333 143-218 (344)
80 TIGR01557 myb_SHAQKYF myb-like 99.0 8.3E-10 1.8E-14 89.1 6.4 54 220-273 1-55 (57)
81 PRK10693 response regulator of 98.9 5.5E-09 1.2E-13 110.1 12.5 89 62-152 2-92 (303)
82 PRK15029 arginine decarboxylas 98.9 1E-08 2.2E-13 119.8 13.9 119 34-154 1-135 (755)
83 COG3279 LytT Response regulato 98.8 2.3E-08 5.1E-13 102.7 10.7 115 34-152 2-119 (244)
84 PRK10618 phosphotransfer inter 98.0 8.2E-06 1.8E-10 98.0 6.9 81 1-89 640-737 (894)
85 PRK11107 hybrid sensory histid 97.9 8.6E-05 1.9E-09 88.3 14.0 144 1-150 486-650 (919)
86 COG3706 PleD Response regulato 97.8 2.2E-05 4.8E-10 86.8 5.3 94 57-153 12-105 (435)
87 PRK12704 phosphodiesterase; Pr 97.3 0.00042 9.2E-09 78.8 7.4 44 108-151 251-296 (520)
88 PF06490 FleQ: Flagellar regul 97.3 0.0021 4.5E-08 58.5 9.9 106 35-149 1-107 (109)
89 smart00448 REC cheY-homologous 97.2 0.0028 6.1E-08 44.6 8.1 55 34-90 1-55 (55)
90 PF03709 OKR_DC_1_N: Orn/Lys/A 96.3 0.038 8.2E-07 50.6 10.3 105 46-152 6-114 (115)
91 cd02071 MM_CoA_mut_B12_BD meth 96.0 0.23 4.9E-06 45.7 13.8 111 35-147 1-121 (122)
92 PRK02261 methylaspartate mutas 95.4 0.46 1E-05 45.0 13.7 115 33-150 3-134 (137)
93 cd02067 B12-binding B12 bindin 94.4 0.56 1.2E-05 42.5 11.1 94 40-135 10-109 (119)
94 TIGR00640 acid_CoA_mut_C methy 93.8 1.7 3.6E-05 41.0 13.4 110 40-151 13-128 (132)
95 PRK15399 lysine decarboxylase 93.5 0.7 1.5E-05 54.8 12.4 117 34-154 1-125 (713)
96 PRK15400 lysine decarboxylase 92.7 0.89 1.9E-05 54.0 11.7 117 34-154 1-125 (714)
97 PRK07152 nadD putative nicotin 91.4 0.076 1.6E-06 57.4 0.9 76 246-328 170-259 (342)
98 TIGR00295 conserved hypothetic 91.1 0.16 3.5E-06 49.3 2.8 45 262-309 12-58 (164)
99 TIGR03815 CpaE_hom_Actino heli 90.7 0.69 1.5E-05 49.3 7.4 84 58-150 2-86 (322)
100 TIGR00277 HDIG uncharacterized 90.1 0.17 3.7E-06 41.6 1.7 41 263-309 4-44 (80)
101 cd04728 ThiG Thiazole synthase 89.9 3.6 7.7E-05 43.0 11.4 112 33-152 93-226 (248)
102 TIGR01501 MthylAspMutase methy 89.8 7.9 0.00017 36.8 12.8 108 42-151 14-133 (134)
103 PF01966 HD: HD domain; Inter 89.5 0.11 2.3E-06 45.7 0.0 41 265-309 2-42 (122)
104 PRK00208 thiG thiazole synthas 89.2 3.7 8.1E-05 42.8 11.0 112 33-152 93-226 (250)
105 PRK15320 transcriptional activ 87.8 2.3 5E-05 43.1 8.0 163 35-205 3-196 (251)
106 PRK12703 tRNA 2'-O-methylase; 87.7 4.4 9.6E-05 44.2 10.9 72 35-114 32-105 (339)
107 PF02310 B12-binding: B12 bind 87.7 6.6 0.00014 35.1 10.5 91 42-135 13-111 (121)
108 PF10087 DUF2325: Uncharacteri 84.6 7.1 0.00015 34.4 8.8 80 35-114 1-83 (97)
109 PRK00043 thiE thiamine-phospha 83.6 17 0.00037 35.8 12.1 69 62-134 110-187 (212)
110 PRK01130 N-acetylmannosamine-6 82.6 24 0.00052 35.5 12.9 84 49-135 110-202 (221)
111 cd02070 corrinoid_protein_B12- 82.3 19 0.00042 35.9 11.9 98 33-135 82-191 (201)
112 COG4999 Uncharacterized domain 82.2 6.4 0.00014 36.9 7.6 107 32-146 10-121 (140)
113 TIGR03319 YmdA_YtgF conserved 81.8 0.99 2.1E-05 51.8 2.8 67 234-307 298-367 (514)
114 COG2185 Sbm Methylmalonyl-CoA 81.6 45 0.00097 32.2 13.4 116 33-150 12-137 (143)
115 cd02072 Glm_B12_BD B12 binding 81.5 39 0.00084 32.0 12.8 103 42-147 12-127 (128)
116 COG1418 Predicted HD superfami 80.5 1.2 2.7E-05 45.5 2.7 43 260-308 33-75 (222)
117 CHL00162 thiG thiamin biosynth 79.4 33 0.00071 36.2 12.5 115 33-152 107-240 (267)
118 PRK09426 methylmalonyl-CoA mut 77.9 26 0.00055 42.1 12.8 116 34-151 583-708 (714)
119 cd02069 methionine_synthase_B1 77.6 32 0.00069 35.0 11.9 103 32-136 87-202 (213)
120 PRK10558 alpha-dehydro-beta-de 76.6 28 0.00061 36.4 11.4 100 48-149 9-113 (256)
121 cd04729 NanE N-acetylmannosami 76.5 34 0.00073 34.4 11.7 73 60-135 127-206 (219)
122 PRK00106 hypothetical protein; 75.7 2.4 5.1E-05 48.9 3.4 66 235-307 320-388 (535)
123 PRK12705 hypothetical protein; 75.4 2.6 5.7E-05 48.3 3.6 65 236-307 294-361 (508)
124 TIGR03239 GarL 2-dehydro-3-deo 75.3 36 0.00077 35.5 11.7 99 49-149 3-106 (249)
125 TIGR03401 cyanamide_fam HD dom 74.6 2.4 5.3E-05 43.6 2.9 58 263-328 55-116 (228)
126 TIGR02311 HpaI 2,4-dihydroxyhe 74.0 39 0.00085 35.1 11.6 99 49-149 3-106 (249)
127 PF01408 GFO_IDH_MocA: Oxidore 73.7 55 0.0012 28.9 11.2 36 117-152 75-112 (120)
128 PRK12724 flagellar biosynthesi 73.3 18 0.00039 40.8 9.4 120 14-135 232-368 (432)
129 PRK10128 2-keto-3-deoxy-L-rham 73.2 39 0.00085 35.7 11.5 100 48-149 8-112 (267)
130 TIGR01334 modD putative molybd 70.8 17 0.00037 38.6 8.2 94 35-132 158-260 (277)
131 PRK11889 flhF flagellar biosyn 70.8 17 0.00037 40.9 8.4 56 32-87 268-328 (436)
132 PRK14974 cell division protein 70.8 19 0.00042 39.2 8.8 100 32-133 167-285 (336)
133 PRK03958 tRNA 2'-O-methylase; 70.6 43 0.00093 33.4 10.3 78 34-114 32-111 (176)
134 PRK08385 nicotinate-nucleotide 69.9 40 0.00086 35.9 10.7 94 35-133 156-257 (278)
135 PRK05718 keto-hydroxyglutarate 69.2 54 0.0012 33.5 11.1 90 51-145 10-103 (212)
136 TIGR00343 pyridoxal 5'-phospha 69.1 23 0.0005 37.8 8.6 61 93-153 184-251 (287)
137 TIGR01596 cas3_HD CRISPR-assoc 68.5 1.9 4.2E-05 41.1 0.5 42 266-309 3-48 (177)
138 PRK05703 flhF flagellar biosyn 67.8 22 0.00047 40.0 8.6 92 32-124 250-350 (424)
139 cd00077 HDc Metal dependent ph 67.7 2.3 4.9E-05 37.2 0.7 43 264-309 3-45 (145)
140 cd02068 radical_SAM_B12_BD B12 67.3 55 0.0012 29.8 9.9 103 45-149 4-110 (127)
141 PRK07896 nicotinate-nucleotide 67.2 26 0.00057 37.5 8.7 93 36-132 173-271 (289)
142 TIGR02370 pyl_corrinoid methyl 66.5 55 0.0012 32.7 10.5 96 34-134 85-192 (197)
143 TIGR00488 putative HD superfam 66.2 2.6 5.7E-05 40.4 0.9 40 262-307 7-46 (158)
144 cd04727 pdxS PdxS is a subunit 65.8 32 0.00069 36.8 8.8 90 61-153 117-248 (283)
145 PF01596 Methyltransf_3: O-met 64.6 28 0.0006 35.3 7.9 84 4-88 37-130 (205)
146 PRK12726 flagellar biosynthesi 63.6 36 0.00078 38.1 9.1 57 32-88 233-294 (407)
147 cd00564 TMP_TenI Thiamine mono 63.6 56 0.0012 31.2 9.7 70 62-135 101-178 (196)
148 TIGR00007 phosphoribosylformim 62.8 88 0.0019 31.5 11.3 68 65-134 146-217 (230)
149 PF01729 QRPTase_C: Quinolinat 62.6 24 0.00052 34.7 6.9 94 36-133 53-153 (169)
150 PF03602 Cons_hypoth95: Conser 62.3 31 0.00066 34.2 7.6 67 34-102 66-138 (183)
151 cd04730 NPD_like 2-Nitropropan 62.1 1.1E+02 0.0023 30.8 11.8 71 62-135 108-185 (236)
152 TIGR02026 BchE magnesium-proto 60.5 99 0.0021 35.3 12.3 107 42-151 21-137 (497)
153 PF02254 TrkA_N: TrkA-N domain 60.1 98 0.0021 27.2 9.9 92 34-134 22-115 (116)
154 PRK05848 nicotinate-nucleotide 60.1 36 0.00079 36.1 8.1 93 35-134 154-256 (273)
155 cd04724 Tryptophan_synthase_al 59.9 38 0.00082 34.9 8.1 57 94-150 64-126 (242)
156 TIGR00064 ftsY signal recognit 58.9 35 0.00076 35.9 7.8 55 32-88 99-163 (272)
157 PRK11840 bifunctional sulfur c 58.8 1.2E+02 0.0025 33.3 11.7 115 33-151 167-299 (326)
158 COG0512 PabA Anthranilate/para 58.8 15 0.00033 37.0 4.8 77 34-114 2-82 (191)
159 PF14097 SpoVAE: Stage V sporu 58.3 95 0.0021 31.0 9.9 80 36-115 3-94 (180)
160 PLN02591 tryptophan synthase 58.0 35 0.00076 35.7 7.5 58 93-150 65-128 (250)
161 smart00471 HDc Metal dependent 57.9 5.3 0.00012 34.2 1.3 43 262-309 3-45 (124)
162 PRK06015 keto-hydroxyglutarate 57.6 72 0.0016 32.4 9.4 82 61-144 10-91 (201)
163 PRK06731 flhF flagellar biosyn 56.6 44 0.00096 35.3 8.1 55 33-88 103-163 (270)
164 cd03114 ArgK-like The function 56.5 12 0.00025 35.7 3.4 44 66-115 80-123 (148)
165 PF07688 KaiA: KaiA domain; I 56.0 46 0.00099 35.2 7.8 112 35-152 2-119 (283)
166 TIGR03151 enACPred_II putative 55.8 99 0.0022 33.2 10.7 84 50-136 102-191 (307)
167 TIGR00308 TRM1 tRNA(guanine-26 54.9 2.2E+02 0.0047 31.7 13.4 111 34-152 70-190 (374)
168 TIGR03499 FlhF flagellar biosy 54.8 13 0.00028 39.2 3.8 54 33-87 224-280 (282)
169 PRK13111 trpA tryptophan synth 54.7 42 0.00091 35.2 7.5 57 93-149 75-138 (258)
170 TIGR00262 trpA tryptophan synt 54.6 46 0.001 34.8 7.8 57 93-149 73-136 (256)
171 TIGR01182 eda Entner-Doudoroff 53.6 1.2E+02 0.0025 31.0 10.2 82 59-144 12-95 (204)
172 PRK06096 molybdenum transport 53.4 43 0.00093 35.8 7.4 71 59-133 192-262 (284)
173 TIGR00693 thiE thiamine-phosph 52.8 1E+02 0.0022 30.1 9.5 70 61-134 101-179 (196)
174 PRK10416 signal recognition pa 52.1 48 0.001 35.8 7.6 55 32-88 141-205 (318)
175 PLN02871 UDP-sulfoquinovose:DA 51.9 1.6E+02 0.0036 32.7 12.1 107 33-151 290-399 (465)
176 PRK14722 flhF flagellar biosyn 51.5 42 0.00092 37.2 7.2 88 34-122 168-263 (374)
177 PRK07428 nicotinate-nucleotide 51.2 65 0.0014 34.5 8.3 94 35-133 168-269 (288)
178 PRK05749 3-deoxy-D-manno-octul 51.2 1.5E+02 0.0031 32.5 11.4 110 33-151 262-387 (425)
179 CHL00200 trpA tryptophan synth 51.2 50 0.0011 34.8 7.4 57 93-149 78-140 (263)
180 cd02065 B12-binding_like B12 b 51.0 91 0.002 27.7 8.2 71 40-112 10-86 (125)
181 PRK14723 flhF flagellar biosyn 50.2 69 0.0015 38.9 9.1 116 34-150 216-347 (767)
182 PRK00748 1-(5-phosphoribosyl)- 49.4 83 0.0018 31.6 8.5 67 66-134 148-219 (233)
183 cd03823 GT1_ExpE7_like This fa 49.1 2.9E+02 0.0064 27.9 12.6 66 80-151 263-328 (359)
184 PRK06552 keto-hydroxyglutarate 48.8 1.7E+02 0.0037 29.8 10.7 93 51-145 8-104 (213)
185 PF09936 Methyltrn_RNA_4: SAM- 48.5 1.3E+02 0.0028 30.3 9.3 101 35-138 44-161 (185)
186 TIGR01425 SRP54_euk signal rec 48.4 39 0.00084 38.2 6.4 99 33-133 128-245 (429)
187 PLN02781 Probable caffeoyl-CoA 48.2 86 0.0019 32.1 8.5 56 33-88 93-153 (234)
188 PTZ00314 inosine-5'-monophosph 48.2 1.4E+02 0.0031 34.2 11.0 101 33-136 253-374 (495)
189 TIGR01037 pyrD_sub1_fam dihydr 47.8 2.3E+02 0.005 29.8 11.9 58 95-152 223-286 (300)
190 PRK10669 putative cation:proto 47.3 1.5E+02 0.0033 34.2 11.2 92 33-133 440-533 (558)
191 PRK05458 guanosine 5'-monophos 47.2 2.8E+02 0.0061 30.3 12.5 98 35-135 113-230 (326)
192 PRK15484 lipopolysaccharide 1, 47.0 3.6E+02 0.0079 29.1 13.6 109 33-151 224-343 (380)
193 TIGR00262 trpA tryptophan synt 46.8 2.7E+02 0.0058 29.1 12.0 104 33-136 115-228 (256)
194 TIGR03088 stp2 sugar transfera 46.6 1.6E+02 0.0036 31.0 10.7 107 33-151 229-337 (374)
195 PRK10119 putative hydrolase; P 46.6 9.6 0.00021 39.4 1.2 36 265-306 27-62 (231)
196 PRK07695 transcriptional regul 46.4 1.7E+02 0.0038 28.9 10.1 67 62-132 101-174 (201)
197 PRK04180 pyridoxal biosynthesi 46.1 44 0.00095 35.9 6.0 62 93-154 190-258 (293)
198 COG0157 NadC Nicotinate-nucleo 46.0 1.4E+02 0.003 32.1 9.6 93 35-132 160-259 (280)
199 cd04726 KGPDC_HPS 3-Keto-L-gul 45.7 3E+02 0.0064 26.8 12.0 99 33-135 77-186 (202)
200 PRK13587 1-(5-phosphoribosyl)- 45.7 1.2E+02 0.0025 31.3 9.0 68 67-135 151-221 (234)
201 PLN02274 inosine-5'-monophosph 45.6 1.5E+02 0.0033 34.2 10.7 101 32-135 259-380 (505)
202 PRK13566 anthranilate synthase 45.6 82 0.0018 38.0 8.8 81 30-114 523-606 (720)
203 PF02581 TMP-TENI: Thiamine mo 45.5 1.2E+02 0.0026 29.6 8.7 79 51-133 90-175 (180)
204 cd04723 HisA_HisF Phosphoribos 45.5 1.1E+02 0.0024 31.3 8.8 68 65-134 147-217 (233)
205 PRK05567 inosine 5'-monophosph 45.4 1E+02 0.0022 35.2 9.3 100 32-135 239-360 (486)
206 PF05690 ThiG: Thiazole biosyn 45.3 1.1E+02 0.0023 32.2 8.4 115 33-151 93-225 (247)
207 TIGR02855 spore_yabG sporulati 45.0 2.2E+02 0.0048 30.5 10.8 103 30-136 101-226 (283)
208 PF00249 Myb_DNA-binding: Myb- 44.4 91 0.002 23.7 6.1 46 223-271 2-47 (48)
209 cd00331 IGPS Indole-3-glycerol 44.1 3.4E+02 0.0073 27.0 12.8 78 55-135 119-201 (217)
210 PF03328 HpcH_HpaI: HpcH/HpaI 43.8 1.6E+02 0.0034 29.6 9.5 83 65-149 9-106 (221)
211 cd06533 Glyco_transf_WecG_TagA 43.7 1.3E+02 0.0029 29.2 8.6 78 32-113 45-131 (171)
212 COG4122 Predicted O-methyltran 43.5 63 0.0014 33.3 6.5 57 33-90 84-143 (219)
213 PRK07649 para-aminobenzoate/an 43.3 29 0.00063 34.6 4.0 74 36-113 2-79 (195)
214 PRK14098 glycogen synthase; Pr 42.6 2.9E+02 0.0063 31.4 12.4 112 33-151 336-450 (489)
215 PRK07114 keto-hydroxyglutarate 42.6 2.8E+02 0.006 28.6 11.1 85 58-144 18-106 (222)
216 PRK00771 signal recognition pa 42.2 1E+02 0.0023 34.9 8.6 85 32-117 122-218 (437)
217 PRK06543 nicotinate-nucleotide 42.1 3.6E+02 0.0078 28.9 12.1 91 35-132 161-262 (281)
218 cd00381 IMPDH IMPDH: The catal 42.0 2.7E+02 0.0058 30.2 11.4 99 32-134 105-225 (325)
219 PF00534 Glycos_transf_1: Glyc 41.9 2.9E+02 0.0062 25.5 11.0 109 33-153 47-159 (172)
220 PRK07259 dihydroorotate dehydr 41.8 3.4E+02 0.0074 28.6 12.1 58 94-151 222-285 (301)
221 TIGR00735 hisF imidazoleglycer 41.6 2.7E+02 0.0057 28.8 11.0 53 95-147 188-247 (254)
222 PRK06843 inosine 5-monophospha 41.5 2.8E+02 0.0061 31.3 11.7 101 32-135 164-285 (404)
223 PRK09140 2-dehydro-3-deoxy-6-p 41.2 2E+02 0.0044 29.1 9.7 92 52-145 6-99 (206)
224 PRK09016 quinolinate phosphori 40.8 1.4E+02 0.0031 32.1 9.0 91 35-132 181-277 (296)
225 COG1713 Predicted HD superfami 40.4 9.3 0.0002 38.4 0.0 37 265-307 19-55 (187)
226 TIGR01761 thiaz-red thiazoliny 40.1 2.9E+02 0.0063 30.3 11.4 104 32-151 2-113 (343)
227 PF03808 Glyco_tran_WecB: Glyc 40.1 2.1E+02 0.0047 27.8 9.5 78 32-113 47-133 (172)
228 cd01573 modD_like ModD; Quinol 40.0 1.4E+02 0.003 31.7 8.6 94 36-134 155-257 (272)
229 PRK04296 thymidine kinase; Pro 39.6 27 0.00059 34.4 3.2 80 32-112 29-112 (190)
230 TIGR00959 ffh signal recogniti 39.6 1.2E+02 0.0025 34.4 8.4 55 32-88 127-191 (428)
231 PRK01911 ppnK inorganic polyph 39.5 2.6E+02 0.0056 30.0 10.7 102 34-154 1-122 (292)
232 TIGR02621 cas3_GSU0051 CRISPR- 39.5 17 0.00036 44.4 1.9 42 264-309 676-717 (844)
233 PRK07028 bifunctional hexulose 39.3 5.8E+02 0.013 28.5 13.9 73 79-152 131-212 (430)
234 PRK00278 trpC indole-3-glycero 38.9 4.8E+02 0.01 27.3 12.7 87 45-135 148-240 (260)
235 PRK02083 imidazole glycerol ph 38.9 3.1E+02 0.0067 28.2 10.9 78 67-146 156-244 (253)
236 PF05582 Peptidase_U57: YabG p 38.8 2.4E+02 0.0052 30.3 10.0 54 30-85 102-160 (287)
237 PRK04302 triosephosphate isome 38.8 4.3E+02 0.0093 26.7 12.3 53 96-148 162-217 (223)
238 PRK05581 ribulose-phosphate 3- 38.5 1.9E+02 0.0042 28.6 9.1 57 80-136 132-199 (220)
239 cd03819 GT1_WavL_like This fam 38.5 4.3E+02 0.0094 27.1 12.1 108 33-150 216-328 (355)
240 cd01568 QPRTase_NadC Quinolina 38.3 1.4E+02 0.0031 31.4 8.4 95 35-134 153-254 (269)
241 PF03060 NMO: Nitronate monoox 38.1 2.2E+02 0.0048 30.7 10.1 82 51-135 130-219 (330)
242 TIGR00734 hisAF_rel hisA/hisF 38.1 1.8E+02 0.0039 29.7 8.9 69 65-135 142-213 (221)
243 cd03813 GT1_like_3 This family 37.9 3.1E+02 0.0066 30.8 11.6 106 34-151 325-441 (475)
244 PRK06978 nicotinate-nucleotide 37.8 2.5E+02 0.0055 30.3 10.2 91 35-132 178-274 (294)
245 COG0742 N6-adenine-specific me 37.8 62 0.0013 32.6 5.3 53 34-87 67-122 (187)
246 TIGR01305 GMP_reduct_1 guanosi 37.7 1.4E+02 0.0031 32.8 8.4 57 79-135 121-178 (343)
247 COG0541 Ffh Signal recognition 37.7 1.6E+02 0.0035 33.5 9.0 101 32-134 127-246 (451)
248 cd04722 TIM_phosphate_binding 37.4 2.4E+02 0.0052 26.3 9.2 56 79-134 136-198 (200)
249 cd04962 GT1_like_5 This family 37.1 3.1E+02 0.0067 28.5 10.9 65 80-151 271-335 (371)
250 PF01081 Aldolase: KDPG and KH 37.0 1E+02 0.0022 31.2 6.8 82 60-144 13-95 (196)
251 PRK06106 nicotinate-nucleotide 36.8 1.9E+02 0.0042 30.9 9.1 90 36-132 167-263 (281)
252 PLN02591 tryptophan synthase 36.6 5.2E+02 0.011 27.1 12.3 100 35-136 109-219 (250)
253 PRK03659 glutathione-regulated 36.5 1.8E+02 0.0038 34.2 9.6 94 33-135 423-518 (601)
254 PRK06559 nicotinate-nucleotide 36.4 2.8E+02 0.0061 29.9 10.3 91 35-132 169-266 (290)
255 TIGR01163 rpe ribulose-phospha 36.4 1.5E+02 0.0033 29.0 7.9 68 65-136 115-194 (210)
256 PRK06774 para-aminobenzoate sy 36.3 46 0.00099 32.8 4.2 74 36-113 2-79 (191)
257 PRK09922 UDP-D-galactose:(gluc 36.1 4E+02 0.0087 28.3 11.7 67 80-152 258-324 (359)
258 cd08179 NADPH_BDH NADPH-depend 35.8 2.7E+02 0.0058 30.5 10.4 63 34-101 24-100 (375)
259 cd04732 HisA HisA. Phosphorib 35.8 4.6E+02 0.0099 26.2 11.4 68 65-134 147-218 (234)
260 cd00331 IGPS Indole-3-glycerol 35.6 3E+02 0.0065 27.4 10.0 68 82-149 48-117 (217)
261 PRK15427 colanic acid biosynth 35.6 6.3E+02 0.014 27.7 13.6 107 34-151 254-369 (406)
262 PLN02716 nicotinate-nucleotide 34.9 2.5E+02 0.0054 30.5 9.6 98 35-132 172-287 (308)
263 PF04321 RmlD_sub_bind: RmlD s 34.7 89 0.0019 32.7 6.2 80 34-115 1-102 (286)
264 TIGR00736 nifR3_rel_arch TIM-b 34.4 1.9E+02 0.0042 29.9 8.5 94 38-134 116-219 (231)
265 cd08187 BDH Butanol dehydrogen 34.3 2.6E+02 0.0056 30.7 10.0 63 34-101 29-105 (382)
266 TIGR00095 RNA methyltransferas 34.0 4.1E+02 0.0089 26.3 10.5 68 35-102 74-144 (189)
267 cd03820 GT1_amsD_like This fam 33.8 4.8E+02 0.01 25.8 12.7 108 33-151 209-318 (348)
268 PF01959 DHQS: 3-dehydroquinat 33.6 3.7E+02 0.008 29.8 10.7 71 80-151 97-169 (354)
269 cd03115 SRP The signal recogni 33.5 97 0.0021 29.5 5.8 53 33-87 28-90 (173)
270 cd04731 HisF The cyclase subun 33.5 2.2E+02 0.0047 29.0 8.7 71 63-135 26-100 (243)
271 COG0421 SpeE Spermidine syntha 33.2 57 0.0012 34.8 4.5 54 34-90 101-160 (282)
272 COG2022 ThiG Uncharacterized e 32.9 3.2E+02 0.0069 28.8 9.5 115 33-151 100-232 (262)
273 PRK04338 N(2),N(2)-dimethylgua 32.6 5.3E+02 0.012 28.6 12.1 78 34-118 82-162 (382)
274 TIGR03061 pip_yhgE_Nterm YhgE/ 32.6 1.2E+02 0.0026 29.1 6.3 52 31-85 41-102 (164)
275 TIGR01163 rpe ribulose-phospha 32.5 4E+02 0.0086 26.0 10.2 54 93-146 43-97 (210)
276 PRK12723 flagellar biosynthesi 32.5 5.1E+02 0.011 29.0 11.9 103 32-135 205-321 (388)
277 cd05212 NAD_bind_m-THF_DH_Cycl 32.2 1.5E+02 0.0033 28.2 6.8 53 32-91 27-83 (140)
278 PRK13125 trpA tryptophan synth 32.1 5.4E+02 0.012 26.4 11.4 89 45-136 117-215 (244)
279 PF04131 NanE: Putative N-acet 31.6 4.5E+02 0.0097 26.7 10.2 100 33-136 64-174 (192)
280 cd03818 GT1_ExpC_like This fam 31.4 4.7E+02 0.01 28.1 11.4 75 66-151 291-365 (396)
281 cd03804 GT1_wbaZ_like This fam 31.4 3.7E+02 0.008 28.1 10.4 104 34-151 222-325 (351)
282 COG3836 HpcH 2,4-dihydroxyhept 31.2 4E+02 0.0087 28.1 9.9 97 48-147 7-109 (255)
283 PLN02476 O-methyltransferase 31.2 2.2E+02 0.0049 30.3 8.5 56 33-88 143-203 (278)
284 PRK15201 fimbriae regulatory p 30.9 65 0.0014 32.5 4.1 97 106-205 69-165 (198)
285 PF07652 Flavi_DEAD: Flaviviru 30.8 2.1E+02 0.0045 27.9 7.4 85 32-117 32-137 (148)
286 PRK06895 putative anthranilate 30.6 66 0.0014 31.7 4.2 75 34-113 2-79 (190)
287 cd03313 enolase Enolase: Enola 30.6 3.6E+02 0.0079 30.1 10.5 104 40-146 210-346 (408)
288 COG1643 HrpA HrpA-like helicas 30.5 4.6E+02 0.0099 32.5 11.9 127 2-153 109-254 (845)
289 PF04309 G3P_antiterm: Glycero 30.4 66 0.0014 32.1 4.1 62 66-133 106-167 (175)
290 cd08185 Fe-ADH1 Iron-containin 30.3 2.5E+02 0.0055 30.7 9.1 63 34-101 26-102 (380)
291 PRK00811 spermidine synthase; 30.2 2.6E+02 0.0056 29.5 8.9 55 33-90 100-161 (283)
292 COG0626 MetC Cystathionine bet 30.2 3.3E+02 0.0072 30.6 10.0 98 33-133 102-205 (396)
293 cd04949 GT1_gtfA_like This fam 30.2 5E+02 0.011 27.3 11.2 54 93-151 291-344 (372)
294 PRK08007 para-aminobenzoate sy 30.1 63 0.0014 31.9 4.0 74 36-113 2-79 (187)
295 COG0352 ThiE Thiamine monophos 30.1 5.9E+02 0.013 26.1 11.0 70 61-134 109-185 (211)
296 PRK07455 keto-hydroxyglutarate 30.0 4.9E+02 0.011 25.8 10.3 85 57-142 14-98 (187)
297 KOG0780 Signal recognition par 29.8 2.7E+02 0.0059 31.5 9.0 84 32-117 128-226 (483)
298 TIGR00566 trpG_papA glutamine 29.6 76 0.0017 31.3 4.5 74 36-113 2-79 (188)
299 cd04726 KGPDC_HPS 3-Keto-L-gul 29.5 1.8E+02 0.0038 28.4 7.1 82 65-148 11-98 (202)
300 PF00977 His_biosynth: Histidi 29.4 2.4E+02 0.0052 28.8 8.2 70 64-134 147-219 (229)
301 COG0673 MviM Predicted dehydro 28.9 6.9E+02 0.015 26.1 13.0 105 33-150 3-115 (342)
302 cd04740 DHOD_1B_like Dihydroor 28.8 6.9E+02 0.015 26.1 12.6 38 95-132 220-257 (296)
303 KOG1562 Spermidine synthase [A 28.5 1.7E+02 0.0036 32.0 6.9 64 35-100 147-216 (337)
304 TIGR01302 IMP_dehydrog inosine 28.4 1.9E+02 0.0041 32.7 7.9 54 79-133 236-291 (450)
305 cd00429 RPE Ribulose-5-phospha 28.3 2.1E+02 0.0045 28.0 7.3 55 80-135 128-194 (211)
306 TIGR00696 wecB_tagA_cpsF bacte 28.2 3.6E+02 0.0077 26.7 8.9 76 32-111 47-130 (177)
307 PRK03562 glutathione-regulated 28.0 3E+02 0.0064 32.6 9.7 92 33-133 423-516 (621)
308 PRK13585 1-(5-phosphoribosyl)- 28.0 3.9E+02 0.0084 27.0 9.4 68 65-134 150-221 (241)
309 TIGR01306 GMP_reduct_2 guanosi 27.9 8.3E+02 0.018 26.7 12.4 98 35-135 110-227 (321)
310 TIGR03449 mycothiol_MshA UDP-N 27.8 7.7E+02 0.017 26.3 12.3 107 34-151 253-367 (405)
311 PRK10742 putative methyltransf 27.8 2.7E+02 0.0059 29.3 8.3 57 33-92 110-177 (250)
312 PF03102 NeuB: NeuB family; I 27.7 2.2E+02 0.0048 29.7 7.6 94 45-143 57-160 (241)
313 cd08194 Fe-ADH6 Iron-containin 27.6 4.1E+02 0.0088 29.1 10.1 63 34-101 24-99 (375)
314 PRK04128 1-(5-phosphoribosyl)- 27.5 6.7E+02 0.015 25.7 11.1 71 64-136 30-103 (228)
315 PRK05458 guanosine 5'-monophos 27.5 2.2E+02 0.0047 31.1 7.8 53 80-133 112-166 (326)
316 PRK14956 DNA polymerase III su 27.4 1.7E+02 0.0038 33.6 7.3 73 79-152 121-195 (484)
317 PRK01581 speE spermidine synth 27.3 2.6E+02 0.0057 31.2 8.4 56 32-90 173-237 (374)
318 KOG3111 D-ribulose-5-phosphate 27.0 7.1E+02 0.015 25.6 10.7 106 47-152 102-219 (224)
319 TIGR01302 IMP_dehydrog inosine 26.8 5.4E+02 0.012 29.1 11.1 101 32-135 235-356 (450)
320 cd08170 GlyDH Glycerol dehydro 26.7 3.1E+02 0.0067 29.6 8.9 75 34-113 23-108 (351)
321 cd01424 MGS_CPS_II Methylglyox 26.7 4.5E+02 0.0098 23.2 8.8 26 39-64 8-33 (110)
322 PRK09860 putative alcohol dehy 26.6 3.8E+02 0.0083 29.5 9.7 63 34-101 32-107 (383)
323 PF00448 SRP54: SRP54-type pro 26.5 3.4E+02 0.0075 27.0 8.6 116 33-150 29-164 (196)
324 PRK06806 fructose-bisphosphate 26.4 4.8E+02 0.01 27.8 10.0 71 62-134 151-229 (281)
325 KOG4175 Tryptophan synthase al 26.4 1.8E+02 0.0039 30.0 6.4 41 105-145 94-140 (268)
326 cd08181 PPD-like 1,3-propanedi 26.4 4.7E+02 0.01 28.4 10.3 63 34-101 26-102 (357)
327 PRK10867 signal recognition pa 26.4 1.9E+02 0.0041 32.8 7.4 54 33-88 129-192 (433)
328 TIGR01859 fruc_bis_ald_ fructo 26.3 4.8E+02 0.01 27.7 10.0 84 63-153 152-244 (282)
329 PRK08072 nicotinate-nucleotide 26.1 3.7E+02 0.0079 28.7 9.1 91 35-133 160-258 (277)
330 PRK12727 flagellar biosynthesi 26.0 5.3E+02 0.012 30.4 10.9 55 33-88 380-437 (559)
331 PRK06512 thiamine-phosphate py 25.8 5E+02 0.011 26.5 9.7 67 63-133 118-190 (221)
332 TIGR02082 metH 5-methyltetrahy 25.8 5.8E+02 0.012 32.8 12.0 113 33-150 732-857 (1178)
333 cd08176 LPO Lactadehyde:propan 25.5 4.4E+02 0.0095 28.9 9.9 63 34-101 29-104 (377)
334 PRK03708 ppnK inorganic polyph 25.5 4.5E+02 0.0097 27.9 9.6 102 34-154 1-114 (277)
335 COG1419 FlhF Flagellar GTP-bin 25.4 1.7E+02 0.0038 32.9 6.7 121 11-134 209-345 (407)
336 TIGR00735 hisF imidazoleglycer 25.4 4.5E+02 0.0098 27.1 9.5 72 64-136 30-104 (254)
337 TIGR00078 nadC nicotinate-nucl 25.1 4.2E+02 0.0091 28.0 9.2 91 35-134 150-249 (265)
338 TIGR01361 DAHP_synth_Bsub phos 25.0 2.5E+02 0.0055 29.5 7.6 73 66-139 148-234 (260)
339 PRK02155 ppnK NAD(+)/NADH kina 24.9 5.5E+02 0.012 27.4 10.2 101 35-154 7-121 (291)
340 PRK09490 metH B12-dependent me 24.9 5.3E+02 0.011 33.4 11.4 112 34-150 752-876 (1229)
341 COG2519 GCD14 tRNA(1-methylade 24.8 1.5E+02 0.0032 31.4 5.7 92 14-115 101-197 (256)
342 TIGR02990 ectoine_eutA ectoine 24.7 5.2E+02 0.011 26.8 9.7 75 34-110 121-210 (239)
343 COG0159 TrpA Tryptophan syntha 24.7 2.4E+02 0.0052 30.0 7.3 57 95-151 82-145 (265)
344 PLN02935 Bifunctional NADH kin 24.7 5E+02 0.011 30.2 10.2 56 80-154 263-320 (508)
345 PRK07765 para-aminobenzoate sy 24.6 1.1E+02 0.0024 30.9 4.7 80 34-114 1-84 (214)
346 TIGR03704 PrmC_rel_meth putati 24.4 6.7E+02 0.015 25.9 10.5 52 33-87 110-161 (251)
347 TIGR00417 speE spermidine synt 24.3 4.9E+02 0.011 27.1 9.6 55 33-90 96-156 (270)
348 PRK04457 spermidine synthase; 24.3 4E+02 0.0086 27.8 8.9 52 33-87 90-144 (262)
349 PRK02615 thiamine-phosphate py 24.2 7.3E+02 0.016 27.4 11.1 70 61-134 245-321 (347)
350 PRK13125 trpA tryptophan synth 24.1 6.3E+02 0.014 26.0 10.2 54 96-149 64-125 (244)
351 PRK08649 inosine 5-monophospha 24.0 1E+03 0.022 26.4 12.6 66 65-134 142-214 (368)
352 PRK03522 rumB 23S rRNA methylu 24.0 3.8E+02 0.0081 28.6 8.8 78 33-116 195-276 (315)
353 PF00290 Trp_syntA: Tryptophan 24.0 1.4E+02 0.003 31.6 5.3 54 94-147 74-134 (259)
354 PRK01033 imidazole glycerol ph 23.9 4.3E+02 0.0092 27.5 9.0 68 66-134 154-225 (258)
355 PRK14075 pnk inorganic polypho 23.8 7E+02 0.015 26.0 10.6 94 34-154 1-96 (256)
356 smart00426 TEA TEA domain. 23.8 56 0.0012 27.7 2.0 47 224-270 5-67 (68)
357 cd04951 GT1_WbdM_like This fam 23.7 6.4E+02 0.014 25.8 10.4 105 33-151 219-325 (360)
358 cd00452 KDPG_aldolase KDPG and 23.6 3.2E+02 0.0069 26.9 7.7 71 60-136 101-172 (190)
359 PLN02335 anthranilate synthase 23.6 98 0.0021 31.6 4.1 78 33-113 18-98 (222)
360 PRK05567 inosine 5'-monophosph 23.4 3E+02 0.0065 31.4 8.4 64 67-133 230-295 (486)
361 PRK05637 anthranilate synthase 23.3 1.4E+02 0.003 30.2 5.1 76 34-113 2-80 (208)
362 PF01993 MTD: methylene-5,6,7, 23.3 2.1E+02 0.0044 30.3 6.2 63 73-138 55-117 (276)
363 PRK05670 anthranilate synthase 23.1 1.1E+02 0.0024 30.0 4.3 48 36-85 2-49 (189)
364 cd02809 alpha_hydroxyacid_oxid 23.1 8.2E+02 0.018 25.9 11.1 70 63-135 180-256 (299)
365 cd08551 Fe-ADH iron-containing 23.0 4.5E+02 0.0098 28.5 9.4 63 34-101 24-99 (370)
366 PLN02823 spermine synthase 22.8 1.8E+02 0.0039 31.8 6.2 54 34-90 128-187 (336)
367 PRK14949 DNA polymerase III su 22.7 2.2E+02 0.0047 35.5 7.3 72 79-152 119-193 (944)
368 PF07279 DUF1442: Protein of u 22.7 3.9E+02 0.0085 27.7 8.1 77 28-111 65-146 (218)
369 cd03802 GT1_AviGT4_like This f 22.6 8.1E+02 0.018 24.8 11.1 73 66-150 234-306 (335)
370 PLN02898 HMP-P kinase/thiamin- 22.6 4.9E+02 0.011 29.7 9.9 66 61-130 395-467 (502)
371 PRK02290 3-dehydroquinate synt 22.6 4.3E+02 0.0093 29.2 8.8 69 80-150 89-159 (344)
372 cd06338 PBP1_ABC_ligand_bindin 22.5 8.8E+02 0.019 25.2 11.5 76 34-113 142-229 (345)
373 TIGR01306 GMP_reduct_2 guanosi 22.5 3.2E+02 0.0069 29.8 7.9 56 80-135 109-165 (321)
374 CHL00200 trpA tryptophan synth 22.3 3.8E+02 0.0083 28.2 8.3 101 33-136 119-232 (263)
375 PRK11031 guanosine pentaphosph 22.2 40 0.00086 38.6 1.1 42 266-307 325-367 (496)
376 PLN02274 inosine-5'-monophosph 22.1 3.6E+02 0.0077 31.2 8.6 64 67-134 250-316 (505)
377 PF13487 HD_5: HD domain; PDB: 22.1 50 0.0011 26.9 1.3 17 316-332 1-18 (64)
378 PRK13143 hisH imidazole glycer 22.0 1.8E+02 0.0039 28.9 5.5 44 34-85 1-44 (200)
379 CHL00101 trpG anthranilate syn 21.9 1.2E+02 0.0026 29.9 4.2 48 36-85 2-49 (190)
380 TIGR00737 nifR3_yhdG putative 21.8 8.6E+02 0.019 25.9 11.1 94 39-134 113-221 (319)
381 PLN02589 caffeoyl-CoA O-methyl 21.8 3.9E+02 0.0085 27.9 8.2 56 33-88 104-165 (247)
382 PRK05286 dihydroorotate dehydr 21.6 6.7E+02 0.015 27.2 10.3 57 95-151 276-341 (344)
383 PRK07764 DNA polymerase III su 21.6 2.8E+02 0.006 34.2 8.0 72 79-152 120-194 (824)
384 cd08182 HEPD Hydroxyethylphosp 21.5 4.5E+02 0.0097 28.6 9.0 63 34-101 24-96 (367)
385 TIGR03572 WbuZ glycosyl amidat 21.5 5.1E+02 0.011 26.1 8.8 73 63-136 29-104 (232)
386 PRK10415 tRNA-dihydrouridine s 21.4 7.2E+02 0.016 26.8 10.4 95 38-134 114-223 (321)
387 cd08171 GlyDH-like2 Glycerol d 21.4 4.5E+02 0.0097 28.4 8.9 75 34-113 23-109 (345)
388 PRK00994 F420-dependent methyl 21.3 2.8E+02 0.0061 29.3 6.7 80 56-138 30-118 (277)
389 KOG0922 DEAH-box RNA helicase 21.2 3.6E+02 0.0078 32.3 8.3 101 2-127 110-216 (674)
390 PRK15454 ethanol dehydrogenase 21.1 4E+02 0.0087 29.6 8.6 63 34-101 50-125 (395)
391 cd03801 GT1_YqgM_like This fam 21.0 8.2E+02 0.018 24.2 12.0 74 67-151 267-340 (374)
392 cd08186 Fe-ADH8 Iron-containin 20.9 5E+02 0.011 28.6 9.2 63 34-101 27-103 (383)
393 PRK03612 spermidine synthase; 20.7 3.7E+02 0.008 31.0 8.5 55 34-91 322-385 (521)
394 PRK01033 imidazole glycerol ph 20.5 5.5E+02 0.012 26.6 9.0 72 63-135 29-103 (258)
395 TIGR00479 rumA 23S rRNA (uraci 20.4 1.1E+03 0.024 26.1 12.0 80 34-115 315-397 (431)
396 PRK04885 ppnK inorganic polyph 20.3 5.3E+02 0.011 27.2 8.9 57 79-154 35-95 (265)
397 PRK03372 ppnK inorganic polyph 20.2 1.1E+03 0.023 25.6 11.3 102 34-154 6-130 (306)
398 PF11895 DUF3415: Domain of un 20.2 55 0.0012 28.6 1.2 23 431-453 36-58 (80)
399 TIGR01579 MiaB-like-C MiaB-lik 20.2 6.9E+02 0.015 27.6 10.2 92 44-149 11-107 (414)
No 1
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-34 Score=303.09 Aligned_cols=264 Identities=26% Similarity=0.384 Sum_probs=204.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cC---C
Q 006775 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EM---D 106 (632)
Q Consensus 31 p~glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~---~ 106 (632)
...++||+|||++..+..++.+|+..+|.+..|.++++|+++..+.. +|+||+|++||+|||++++.+|+. .+ .
T Consensus 12 ~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ 89 (360)
T COG3437 12 DEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAEVLNKLKAMSPSTRR 89 (360)
T ss_pred cccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHHHHHHHHhcCCcccc
Confidence 35689999999999999999999999999999999999999988765 999999999999999999999975 43 6
Q ss_pred CcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhccccccccccCCccccccCCCChhhHHHHHHhh
Q 006775 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVN 186 (632)
Q Consensus 107 iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~~~~~~~~~~~le~~~~~~ls~~Eie~l~~v~ 186 (632)
+|||++|+..+.+...+++..||+|||.||+++.+|...+...+..+....... ....+++
T Consensus 90 ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k~~~~~~~----------------~~~~~le--- 150 (360)
T COG3437 90 IPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLKRNEDFLL----------------DQNLYLE--- 150 (360)
T ss_pred cceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHH---
Confidence 899999999999999999999999999999999999998875554332211110 0111111
Q ss_pred cCCchhhhhhhhhccccccccccccCCCCCCCCCCcccchHHHHHHHHHHHHHhccc-cccHHHHHHHhcCCCcChH-HH
Q 006775 187 EGTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGID-KAVPKRILELMNVPGLTRE-NV 264 (632)
Q Consensus 187 eG~~~~~~~~~~~is~k~~~d~~~~~~~~s~~kK~rv~wt~ELh~qFl~av~~Lgid-ka~pK~ILelM~v~gltre-~t 264 (632)
+.|+.++..+ +.+.+.. ..+.++|..++ +.|+ +|
T Consensus 151 ---------------------------------------~~e~~~~~~e-~~~~~~~~~~t~~~L~~~~----E~R~~et 186 (360)
T COG3437 151 ---------------------------------------LQELRRRTEE-LAQIEDNLDETLEELAALL----EVRDYET 186 (360)
T ss_pred ---------------------------------------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----Hhcccch
Confidence 0011111111 1111000 02334444332 5555 79
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee--eeeccCCCCChHHHHHHHH-hhcCCCCCCcccc
Q 006775 265 ASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI--QALAASGQIPPQTLAALHA-ELLGRPTGNLVTA 341 (632)
Q Consensus 265 aSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i--~iL~KpGkL~~ee~~imq~-~~iG~~~~~~~~~ 341 (632)
+.|+.|+..|++.+ |.++||++.+++.++.|+||||||||+| +||+|||+||++||++||. ..+|+.. +...
T Consensus 187 g~H~~Rv~~~~~~l---Ae~lgLse~~v~~i~~AapLHDIGKvaiPD~ILlKpg~Lt~ee~~imk~H~~~G~~i--l~~s 261 (360)
T COG3437 187 GDHLERVAQYSELL---AELLGLSEEEVDLIKKAAPLHDIGKVAIPDSILLKPGKLTSEEFEIMKGHPILGAEI--LKSS 261 (360)
T ss_pred hhHHHHHHHHHHHH---HHHhCCCHHHHHHHHhccchhhcccccCChHHhcCCCCCCHHHHHHHhcchHHHHHH--HHHH
Confidence 99999999999999 9999999999999999999999999999 9999999999999999999 5667421 1111
Q ss_pred cCchHHHHhhhCCCcccCC---CCCCCCC
Q 006775 342 VDQPALLQATLQGPKCIPA---DHGFGVW 367 (632)
Q Consensus 342 ~d~~~~~~~~~~~~~~~~~---~~~~~~~ 367 (632)
. + +++...+-...||+ |.|||-.
T Consensus 262 ~--~-~mq~a~eIa~~HHErwDGsGYPdg 287 (360)
T COG3437 262 E--R-LMQVAAEIARHHHERWDGSGYPDG 287 (360)
T ss_pred H--H-HHHHHHHHHHHhhhccCCCCCCCC
Confidence 1 1 77777777888888 9999987
No 2
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.81 E-value=3.8e-19 Score=180.41 Aligned_cols=119 Identities=30% Similarity=0.499 Sum_probs=111.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~--~~~iPIIv 111 (632)
++|||||||+.+++.+...|+..||.|..+.++.+|++.+.. . ||+||+|++||++||++++++||. ...+|||+
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 589999999999999999999999999999999999999865 3 999999999999999999999984 46789999
Q ss_pred EeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 006775 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~ 155 (632)
+|+.++......++++||+||+.|||++.||.+.++.++|+...
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 99999999999999999999999999999999999999987643
No 3
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.80 E-value=2.1e-19 Score=174.83 Aligned_cols=168 Identities=23% Similarity=0.306 Sum_probs=141.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr-~~~~iPIIv 111 (632)
..-|.|||||..+|+.+..+|+..||.+..+.++.+.+..... ..|-++|+|+.||+++|+++.++|. ....+|||+
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~--~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIf 81 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL--DRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIF 81 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC--CCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEEE
Confidence 4468999999999999999999999999999999999987533 3489999999999999999999996 457899999
Q ss_pred EeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhccccccccccCCccccccCCCChhhHHHHHHhhcCCch
Q 006775 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEG 191 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~~~~~~~~~~~le~~~~~~ls~~Eie~l~~v~eG~~~ 191 (632)
+|+++|.....+|++.||.|||.||++.+.|..+++++++............. ........++.+|++++..+..|..+
T Consensus 82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~~~-~~~~~l~tLT~RERqVl~~vV~G~~N 160 (202)
T COG4566 82 LTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEADRQA-AIRARLATLTPRERQVLDLVVRGLMN 160 (202)
T ss_pred EeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHhcCHHHHHHHHHHHcCccc
Confidence 99999999999999999999999999999999999999876433222211100 01123467899999999999999998
Q ss_pred hhhhhhhhcccc
Q 006775 192 TFKAQRKRISAK 203 (632)
Q Consensus 192 ~~~~~~~~is~k 203 (632)
+.++....++..
T Consensus 161 KqIA~dLgiS~r 172 (202)
T COG4566 161 KQIAFDLGISER 172 (202)
T ss_pred HHHHHHcCCchh
Confidence 888887777654
No 4
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.79 E-value=1.3e-18 Score=174.18 Aligned_cols=170 Identities=30% Similarity=0.340 Sum_probs=142.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-ceE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCL-YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~g-y~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr-~~~~iPII 110 (632)
++|+|+||++.++..++.+|...+ ++| ..+.++.++++.++... ||+||+|+.||+++|+++++.|+ ..++++|+
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~--pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vv 78 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELK--PDVVLLDLSMPGMDGLEALKQLRARGPDIKVV 78 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcC--CCEEEEcCCCCCCChHHHHHHHHHHCCCCcEE
Confidence 479999999999999999998764 664 57888999999977654 99999999999999999999997 56889999
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhccccccccc-----cCCc-ccccc-CCCChhhHHHHH
Q 006775 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN-----SGSL-EETDH-HKRGSDEIEYAS 183 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~~~~~~~~-----~~~l-e~~~~-~~ls~~Eie~l~ 183 (632)
++|.+.+...+.+++++||++|+.|..+.++|..+++.+..+.......... .... ..... ..++.||.+++.
T Consensus 79 vlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVL~ 158 (211)
T COG2197 79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPSSSAEAPLAELLTPRELEVLR 158 (211)
T ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeCHHHHHHHHhhcccccccccccCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999998766443321110 0000 11111 368999999999
Q ss_pred HhhcCCchhhhhhhhhcccccc
Q 006775 184 SVNEGTEGTFKAQRKRISAKEE 205 (632)
Q Consensus 184 ~v~eG~~~~~~~~~~~is~k~~ 205 (632)
.+.+|..++.++.+..++.+|+
T Consensus 159 lla~G~snkeIA~~L~iS~~TV 180 (211)
T COG2197 159 LLAEGLSNKEIAEELNLSEKTV 180 (211)
T ss_pred HHHCCCCHHHHHHHHCCCHhHH
Confidence 9999999999999999887755
No 5
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.77 E-value=1.5e-17 Score=164.64 Aligned_cols=119 Identities=29% Similarity=0.469 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-Cce-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~-gy~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr-~~~~iPII 110 (632)
++|||||||+.+.+.-+.+++.. ||. |.+|.+.++|..++++.. |||||+|+.||+.+|++|+.+++ ....+-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCccHHHHHHHHhcCCCCCEE
Confidence 58999999999999999999986 565 569999999999999876 89999999999999999999997 45678899
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 006775 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~ 154 (632)
++|+-.+.+.+.+|+++|+.|||.|||..+.|..++.+..+++.
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~ 122 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRH 122 (224)
T ss_pred EEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877653
No 6
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.76 E-value=3e-18 Score=187.97 Aligned_cols=118 Identities=28% Similarity=0.490 Sum_probs=109.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC--Cce-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRC--LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPV 109 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~--gy~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr-~~~~iPI 109 (632)
++||||||++.+|++|+.++.+. +++ |.+|.+|.+|++.+.+.. |||||+|+.||+|||+++++.++ ..|++.+
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~--pDiviTDI~MP~mdGLdLI~~ike~~p~~~~ 79 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQ--PDIVITDINMPGMDGLDLIKAIKEQSPDTEF 79 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhCCCceE
Confidence 68999999999999999999875 665 469999999999999875 99999999999999999999997 4689999
Q ss_pred EEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 110 IvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
|++|++++.+++.+|+++|+.|||+||++.++|.+++.++..+.
T Consensus 80 IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 80 IILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred EEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988654
No 7
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.73 E-value=2.6e-16 Score=185.57 Aligned_cols=117 Identities=28% Similarity=0.406 Sum_probs=108.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-----CCC
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-----MDL 107 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~-----~~i 107 (632)
+++||||||++..+..++.+|...++.+..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~ 767 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQH--RFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDC 767 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCC
Confidence 46899999999999999999999999999999999999998765 49999999999999999999999742 568
Q ss_pred cEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 108 PIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
|||++|+..+.+...++++.|+++|+.||++.++|..++.++++
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887754
No 8
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.73 E-value=5.5e-17 Score=178.25 Aligned_cols=120 Identities=41% Similarity=0.606 Sum_probs=112.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr-~~~~iPIIv 111 (632)
..+|||||||+.++..+..+|+..||.|.++.++.+|++.+... .||+||+|+.||++||++++++++ ..+.+|||+
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~ 81 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIV 81 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEE
Confidence 34799999999999999999999999999999999999999876 499999999999999999999996 458999999
Q ss_pred EeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 006775 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~ 154 (632)
+|++.+.+.+.+|++.||.|||.|||+.++|...+.+++..+.
T Consensus 82 ~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 82 MTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred EeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999987543
No 9
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.71 E-value=3.2e-16 Score=137.44 Aligned_cols=110 Identities=37% Similarity=0.639 Sum_probs=103.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCc-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006775 36 VLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (632)
Q Consensus 36 VLIVDDd~~~r~~L~~lL~~~gy-~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvLS 113 (632)
||||||++..++.++..|+..++ .+..+.++.+|++.++... ||+||+|+.|++++|+++++.|+. .+.+|+|++|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeeccccccccccccccccccccEEEec
Confidence 79999999999999999999999 9999999999999998765 999999999999999999999974 4689999999
Q ss_pred ccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHH
Q 006775 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~ 147 (632)
...+.....+++++|+++||.||++.++|.++++
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9999999999999999999999999999998774
No 10
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.68 E-value=7.6e-16 Score=152.17 Aligned_cols=171 Identities=17% Similarity=0.169 Sum_probs=138.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCc-e-EEEECCHHHHHHHHHHcCCCceEEEEecCCCC---CCHHHHHHHHhc-cCC
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLY-N-VTTCSQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGL-EMD 106 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy-~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd---mDGleLl~~Lr~-~~~ 106 (632)
+++||||||++..+..++.+|...++ . +..+.++.++++.+.... ||+||+|+.||+ .+|++++++|+. .+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLD--AHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCC--CCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 47999999999999999999987554 3 668899999999887654 999999999998 599999999964 578
Q ss_pred CcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhccccccccc---cCCccccccCCCChhhHHHHH
Q 006775 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN---SGSLEETDHHKRGSDEIEYAS 183 (632)
Q Consensus 107 iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~~~~~~~~---~~~le~~~~~~ls~~Eie~l~ 183 (632)
+|||++|...+.....++++.|+++|+.||.+.++|..+++.+..+.......... ...........++.+|.+++.
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~evl~ 160 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR 160 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCeecCHHHHHHHHHhccCCCccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999987654332211100 000000112458999999999
Q ss_pred HhhcCCchhhhhhhhhcccccc
Q 006775 184 SVNEGTEGTFKAQRKRISAKEE 205 (632)
Q Consensus 184 ~v~eG~~~~~~~~~~~is~k~~ 205 (632)
.+.+|.+...++.+..++.+++
T Consensus 161 ~~~~G~s~~eIA~~l~iS~~TV 182 (216)
T PRK10840 161 LFAEGFLVTEIAKKLNRSIKTI 182 (216)
T ss_pred HHHCCCCHHHHHHHHCCCHHHH
Confidence 9999999999999888887654
No 11
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.67 E-value=8.1e-16 Score=181.79 Aligned_cols=151 Identities=25% Similarity=0.324 Sum_probs=131.5
Q ss_pred ChhHHHHHHHcCC-------CCCCCcccccccCCCC------------CCCccEEEEEeCCHHHHHHHHHHHHhCCceEE
Q 006775 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQ------------FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT 61 (632)
Q Consensus 1 LaI~~~lv~~mGG-------~g~Gs~~~~~~~~p~~------------~p~glrVLIVDDd~~~r~~L~~lL~~~gy~V~ 61 (632)
|+|++++++.||| .+.|++|++.+|+... ...+++||||||++..+..++.+|...++.|.
T Consensus 630 L~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~ 709 (914)
T PRK11466 630 LTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGLRLLLIEDNPLTQRITAEMLNTSGAQVV 709 (914)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEccccccccccccccccccCCcceEEEeCCHHHHHHHHHHHHhcCCceE
Confidence 6899999999999 3667777776654211 01357999999999999999999999999999
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHH
Q 006775 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREE 140 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~e 140 (632)
.+.++.+|++.+... .+||+||+|+.||++||+++++.|+. .+.+|||++|+........++++.|+++||.||++.+
T Consensus 710 ~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~ 788 (914)
T PRK11466 710 AVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPRE 788 (914)
T ss_pred EeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHH
Confidence 999999999988643 25899999999999999999999974 5789999999999999899999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 006775 141 ELKNIWQHVVRK 152 (632)
Q Consensus 141 eL~~~L~~vlrk 152 (632)
+|..++.++++.
T Consensus 789 ~L~~~i~~~~~~ 800 (914)
T PRK11466 789 VLGQLLAHYLQL 800 (914)
T ss_pred HHHHHHHHHhhh
Confidence 999999988764
No 12
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.67 E-value=4e-15 Score=148.69 Aligned_cols=121 Identities=25% Similarity=0.378 Sum_probs=108.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-Cc-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCC
Q 006775 31 PAGLRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDL 107 (632)
Q Consensus 31 p~glrVLIVDDd~~~r~~L~~lL~~~-gy-~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~i 107 (632)
|..++||||||++.++..++..|... ++ .+..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+..
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~--pdlvllD~~mp~~~gle~~~~l~~~~~~~ 79 (225)
T PRK10046 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK--PGLILLDNYLPDGRGINLLHELVQAHYPG 79 (225)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCC
Confidence 55689999999999999999999864 66 4678999999999997654 999999999999999999999975 4678
Q ss_pred cEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 108 PIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
+||++|+..+.....++++.||++|+.||++.++|..+++++...+
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 125 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876543
No 13
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.66 E-value=1.3e-15 Score=177.62 Aligned_cols=149 Identities=23% Similarity=0.357 Sum_probs=127.2
Q ss_pred ChhHHHHHHHcCC-------CCCCCcccccccCCCCC-------------CCccEEEEEeCCHHHHHHHHHHHHhCCceE
Q 006775 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQF-------------PAGLRVLVVDDDITCLRILEQMLRRCLYNV 60 (632)
Q Consensus 1 LaI~~~lv~~mGG-------~g~Gs~~~~~~~~p~~~-------------p~glrVLIVDDd~~~r~~L~~lL~~~gy~V 60 (632)
|+|++++++.||| .|.|++|++..|++... ..+++||||||++..+..++.+|+..++.+
T Consensus 473 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v 552 (779)
T PRK11091 473 LAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVEDAFDEDDMPLPALNILLVEDIELNVIVARSVLEKLGNSV 552 (779)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCeEEEEEEEeccccccccccccccccccccccceEEEcCCHHHHHHHHHHHHHcCCEE
Confidence 6899999999999 47788887776654221 135799999999999999999999999999
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CC-CcEEEEeccCCHHHHHHHHhcCCCEEEeCC
Q 006775 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MD-LPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~---~~-iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
..+.++.+|++.+... .||+||+|+.||+++|+++++.|+.. +. .|||++|+.... ...++++.|+++||.||
T Consensus 553 ~~a~~~~eal~~~~~~--~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP 629 (779)
T PRK11091 553 DVAMTGKEALEMFDPD--EYDLVLLDIQLPDMTGLDIARELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKP 629 (779)
T ss_pred EEECCHHHHHHHhhcC--CCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECC
Confidence 9999999999998754 49999999999999999999999753 34 488989887654 45788999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 006775 137 IREEELKNIWQHVVRK 152 (632)
Q Consensus 137 ~~~eeL~~~L~~vlrk 152 (632)
++.++|..++++++..
T Consensus 630 ~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 630 LSVPALTAMIKKFWDT 645 (779)
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999888753
No 14
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.65 E-value=1.7e-15 Score=179.78 Aligned_cols=150 Identities=27% Similarity=0.349 Sum_probs=131.1
Q ss_pred ChhHHHHHHHcCC-------CCCCCcccccccCCCCC------------CCccEEEEEeCCHHHHHHHHHHHHhCCceEE
Q 006775 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQF------------PAGLRVLVVDDDITCLRILEQMLRRCLYNVT 61 (632)
Q Consensus 1 LaI~~~lv~~mGG-------~g~Gs~~~~~~~~p~~~------------p~glrVLIVDDd~~~r~~L~~lL~~~gy~V~ 61 (632)
|+|++++++.||| .|.|++|++.+|+.... ..+.+||||||++..+..++.+|+..||.|.
T Consensus 651 L~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~~~~~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~ 730 (968)
T TIGR02956 651 LAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAEDSATLTVIDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVT 730 (968)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCccccccccccccccccceEEEcCcHHHHHHHHHHHHHcCCEEE
Confidence 6899999999999 36777777776653211 1235799999999999999999999999999
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CC---CcEEEEeccCCHHHHHHHHhcCCCEEEeCCC
Q 006775 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MD---LPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~-~~---iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~ 137 (632)
.+.++.+|++.+... .||+||+|+.||+++|+++++.|+.. +. +|||++|+....+...++++.|+++|+.||+
T Consensus 731 ~~~~~~~a~~~l~~~--~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~ 808 (968)
T TIGR02956 731 LAESGQSALECFHQH--AFDLALLDINLPDGDGVTLLQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPV 808 (968)
T ss_pred EECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 999999999999764 59999999999999999999999753 23 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 006775 138 REEELKNIWQHVVRK 152 (632)
Q Consensus 138 ~~eeL~~~L~~vlrk 152 (632)
+.++|...+.+++..
T Consensus 809 ~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 809 VEEQLTAMIAVILAG 823 (968)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999888753
No 15
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.64 E-value=3.9e-15 Score=177.67 Aligned_cols=119 Identities=30% Similarity=0.482 Sum_probs=110.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIv 111 (632)
+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+|+|+++++.|+. .+.+|||+
T Consensus 801 ~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~--~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII~ 878 (924)
T PRK10841 801 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVIG 878 (924)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999999999999999999999999999998754 999999999999999999999975 46799999
Q ss_pred EeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
+|+....+...+++++|+++||.||++.++|..++.++.+..
T Consensus 879 lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 879 VTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998876543
No 16
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.63 E-value=4.6e-15 Score=180.51 Aligned_cols=149 Identities=24% Similarity=0.446 Sum_probs=130.0
Q ss_pred ChhHHHHHHHcCC-------CCCCCcccccccCCC---------------CCCCccEEEEEeCCHHHHHHHHHHHHhCCc
Q 006775 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPD---------------QFPAGLRVLVVDDDITCLRILEQMLRRCLY 58 (632)
Q Consensus 1 LaI~~~lv~~mGG-------~g~Gs~~~~~~~~p~---------------~~p~glrVLIVDDd~~~r~~L~~lL~~~gy 58 (632)
|+|++++++.||| .|.|++|+..+|+.. ..+..++||||||++..+..++.+|+..++
T Consensus 904 L~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~ 983 (1197)
T PRK09959 904 LMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGY 983 (1197)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcccccccccccccccCceEEEcCCCHHHHHHHHHHHHHcCC
Confidence 6899999999999 356677766655421 112357899999999999999999999999
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCC
Q 006775 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (632)
Q Consensus 59 ~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~ 137 (632)
.+..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||++|+..+.....++++.|+++||.||+
T Consensus 984 ~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~i~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~ 1061 (1197)
T PRK09959 984 DVDEATDGVQALHKVSMQ--HYDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPL 1061 (1197)
T ss_pred EEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 999999999999998764 4999999999999999999999974 4679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 006775 138 REEELKNIWQHVVR 151 (632)
Q Consensus 138 ~~eeL~~~L~~vlr 151 (632)
+.++|...++++.+
T Consensus 1062 ~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1062 TLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999887654
No 17
>PRK09483 response regulator; Provisional
Probab=99.62 E-value=2e-14 Score=139.66 Aligned_cols=169 Identities=20% Similarity=0.239 Sum_probs=136.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CceEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPII 110 (632)
++|||+||++..+..++..|... ++.+. .+.++.+++..+... .||+||+|+.+++++|+++++.++. .+.+|+|
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii 79 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTN--AVDVVLMDMNMPGIGGLEATRKILRYTPDVKII 79 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEE
Confidence 68999999999999999999874 77765 789999999988765 4999999999999999999999964 5779999
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhcccccccc------ccCCccccccCCCChhhHHHHHH
Q 006775 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE------NSGSLEETDHHKRGSDEIEYASS 184 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~~~~~~~------~~~~le~~~~~~ls~~Eie~l~~ 184 (632)
+++...+.....+++..|+++|+.||++.++|..+++.++++......... ............++.+|.+++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~~ 159 (217)
T PRK09483 80 MLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQIEPATENPFASLSERELQIMLM 159 (217)
T ss_pred EEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHhhcccCCCccccccCHHHHHHHHH
Confidence 999999999999999999999999999999999999998875433221110 00001111234689999999999
Q ss_pred hhcCCchhhhhhhhhccccc
Q 006775 185 VNEGTEGTFKAQRKRISAKE 204 (632)
Q Consensus 185 v~eG~~~~~~~~~~~is~k~ 204 (632)
+..|.....++....++.++
T Consensus 160 ~~~G~~~~~Ia~~l~is~~T 179 (217)
T PRK09483 160 ITKGQKVNEISEQLNLSPKT 179 (217)
T ss_pred HHCCCCHHHHHHHhCCCHHH
Confidence 99998888877776665543
No 18
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.62 E-value=7.9e-15 Score=172.82 Aligned_cols=118 Identities=31% Similarity=0.497 Sum_probs=109.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCcE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~---~~~iPI 109 (632)
.++||||||++..+..++.+|...++.|..+.++.+|++.+... .||+||+|+.||++||+++++.|+. .+.+||
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pi 744 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQR--PFDLILMDIQMPGMDGIRACELIRQLPHNQNTPI 744 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCE
Confidence 46899999999999999999999999999999999999999765 4999999999999999999999974 357999
Q ss_pred EEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 110 IvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
|++|+..+.+...++++.|+++|+.||++.++|...+.+++..
T Consensus 745 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 745 IAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999998887653
No 19
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.61 E-value=3e-14 Score=127.93 Aligned_cols=119 Identities=38% Similarity=0.585 Sum_probs=103.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHH-HHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcE
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAA-VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPV 109 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~-eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~-~~iPI 109 (632)
...+||+|||++..+..++.+|...++.+..+.++. +|++.++... .||+|++|+.||++||++++++++.. ..+|+
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pv 82 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRARGPNIPV 82 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCE
Confidence 457999999999999999999999999999999995 9999998652 39999999999999999999999865 67888
Q ss_pred EEEeccCCHHHHHHHHhcCCCEEEeCCCCHHH-HHHHHHHHHH
Q 006775 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEE-LKNIWQHVVR 151 (632)
Q Consensus 110 IvLSa~~d~e~~~eAl~~GA~DYL~KP~~~ee-L~~~L~~vlr 151 (632)
|++|++........+++.|+++|+.||+...+ |...+.+.+.
T Consensus 83 v~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 83 ILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 88999888877777899999999999977666 6777765543
No 20
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.59 E-value=2e-14 Score=137.42 Aligned_cols=161 Identities=21% Similarity=0.251 Sum_probs=127.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-Cce-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~-gy~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIv 111 (632)
++||||||++..+..++..|... ++. +..+.++.++++.+... .||+||+|+.|++.+|+++++.++ +.+|||+
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~--~~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGR--GVQVCICDISMPDISGLELLSQLP--KGMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHc--cCCCEEE
Confidence 58999999999999999999754 554 56889999999988754 499999999999999999999986 3689999
Q ss_pred EeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhccccccccccCCccccccCCCChhhHHHHHHhhcCCch
Q 006775 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEG 191 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~~~~~~~~~~~le~~~~~~ls~~Eie~l~~v~eG~~~ 191 (632)
++...+.+....+++.|+++|+.||++.++|..+++.++++.......... .+.......++.+|.+++..+.+|...
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~Lt~~E~~il~~l~~g~~~ 155 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAI--KLASGRQDPLTKRERQVAEKLAQGMAV 155 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHH--HHHhccccCCCHHHHHHHHHHHCCCCH
Confidence 999999999999999999999999999999999999988753221111100 000111235888999999999998766
Q ss_pred hhhhhhhhc
Q 006775 192 TFKAQRKRI 200 (632)
Q Consensus 192 ~~~~~~~~i 200 (632)
..++....+
T Consensus 156 ~~Ia~~l~~ 164 (196)
T PRK10360 156 KEIAAELGL 164 (196)
T ss_pred HHHHHHhCC
Confidence 666655443
No 21
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.59 E-value=5.3e-14 Score=135.33 Aligned_cols=166 Identities=15% Similarity=0.177 Sum_probs=131.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIv 111 (632)
|+|||+||++..+..+...|+..++.+. .+.++.++++.+... .||+||+|+.+|+++|+++++.++. .+..|+|+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 5899999999999999999998889886 699999999988764 4999999999999999999999974 46789999
Q ss_pred EeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhcccccccc---ccCCccccccCCCChhhHHHHHHhhcC
Q 006775 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE---NSGSLEETDHHKRGSDEIEYASSVNEG 188 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~~~~~~~---~~~~le~~~~~~ls~~Eie~l~~v~eG 188 (632)
+++..+.....+++..|+++|+.||++.++|..+++.++++......... ............++.+|.+++..+.+|
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~E~~vl~~l~~g 158 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDG 158 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCcccCHHHHHHHHhccCCCcccccCCHHHHHHHHHHHcC
Confidence 99999989999999999999999999999999999998765332111100 000001111235888999999999998
Q ss_pred Cchhhhhhhhhcc
Q 006775 189 TEGTFKAQRKRIS 201 (632)
Q Consensus 189 ~~~~~~~~~~~is 201 (632)
.....++....++
T Consensus 159 ~~~~~I~~~l~~s 171 (204)
T PRK09958 159 KDNNDIAEKMFIS 171 (204)
T ss_pred CCHHHHHHHhCCC
Confidence 7665555544333
No 22
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.59 E-value=6.7e-14 Score=135.55 Aligned_cols=153 Identities=21% Similarity=0.319 Sum_probs=124.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvL 112 (632)
|+||||||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA--PYDAVILDLTLPGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999999998899999999999999988654 4999999999999999999999975 467999999
Q ss_pred eccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhccccccccccC-------Cc---cccccCCCChhhHHHH
Q 006775 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSG-------SL---EETDHHKRGSDEIEYA 182 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~~~~~~~~~~-------~l---e~~~~~~ls~~Eie~l 182 (632)
|+..+.+...++++.||++|+.||++.++|..+++.++++...........+ .. .......++.+|.+++
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il 158 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALL 158 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhccccCCCCceeECCEEEEcccCEEEECCEEEecCHHHHHHH
Confidence 9999999999999999999999999999999999988765321110000000 00 0112235889999999
Q ss_pred HHhhcC
Q 006775 183 SSVNEG 188 (632)
Q Consensus 183 ~~v~eG 188 (632)
..+.++
T Consensus 159 ~~l~~~ 164 (219)
T PRK10336 159 ELLMRN 164 (219)
T ss_pred HHHHhC
Confidence 988877
No 23
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.59 E-value=8.1e-14 Score=135.02 Aligned_cols=118 Identities=31% Similarity=0.506 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvL 112 (632)
++||||||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGH--YSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999999998999999999999999887654 999999999999999999999974 467999999
Q ss_pred eccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
|+..+.....++++.|+++|+.||++.++|...++.++++.
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999888654
No 24
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.58 E-value=5.1e-14 Score=137.78 Aligned_cols=118 Identities=27% Similarity=0.366 Sum_probs=109.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLS 113 (632)
.+||||||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|+|++|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 5899999999999999999999999999999999999887654 49999999999999999999999877789999999
Q ss_pred ccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
+..+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999887653
No 25
>PRK11173 two-component response regulator; Provisional
Probab=99.57 E-value=6.5e-14 Score=139.08 Aligned_cols=118 Identities=20% Similarity=0.408 Sum_probs=109.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLS 113 (632)
.+||||||++..+..+...|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|+|+++
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pii~lt 81 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN--DINLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 5899999999999999999999999999999999999988765 49999999999999999999999876789999999
Q ss_pred ccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
+..+......+++.||++|+.||++.++|...++.++++.
T Consensus 82 ~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999888899999999999999999999999999888764
No 26
>PLN03029 type-a response regulator protein; Provisional
Probab=99.57 E-value=5.5e-14 Score=141.56 Aligned_cols=122 Identities=28% Similarity=0.560 Sum_probs=108.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcC------------------CCceEEEEecCCCCCC
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERK------------------GCFDVVLSDVHMPDMD 93 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~------------------~~pDLVILDi~MPdmD 93 (632)
..++||||||++..+..+..+|...+|.|.++.++.+|++.+.... ..+|+||+|+.||+++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 3579999999999999999999999999999999999999886432 1367999999999999
Q ss_pred HHHHHHHHhcc---CCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 94 GFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 94 GleLl~~Lr~~---~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
|+++++.|+.. ..+|||++|+........++++.|+++||.||++..+|..++.++++.+
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 99999999753 4789999999999999999999999999999999999988888777644
No 27
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.57 E-value=4.3e-14 Score=154.54 Aligned_cols=122 Identities=34% Similarity=0.502 Sum_probs=113.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCc
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~---~~~iP 108 (632)
...+||||||+...+..++.+|...||.+..+.++.+|+..+.+. +||+||+|+.||++||+++++++|. ...+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~--~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL--PPDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcC--CCcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 467999999999999999999999999999999999999999876 4999999999999999999999974 35799
Q ss_pred EEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 006775 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (632)
Q Consensus 109 IIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~ 155 (632)
||++++.++.....+|++.|++||+.||+...+|...+++.+++.+.
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999888876654
No 28
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.57 E-value=1.3e-13 Score=134.29 Aligned_cols=118 Identities=25% Similarity=0.469 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLS 113 (632)
|+||||||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|+|+++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD--DYALIILDIMLPGMDGWQILQTLRTAKQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 5899999999999999999998899999999999999988654 49999999999999999999999866789999999
Q ss_pred ccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
+..+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999887653
No 29
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.57 E-value=1.7e-13 Score=138.00 Aligned_cols=118 Identities=23% Similarity=0.367 Sum_probs=103.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-Cce-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~-gy~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPII 110 (632)
++||||||++.++..++.+|... ++. +..+.++.++++.+......||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEE
Confidence 68999999999999999999864 565 45788999999988642235999999999999999999999974 4689999
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
++|+..+.....++++.|+++|+.||++.++|..++.++..
T Consensus 82 ~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~ 122 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 (239)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987543
No 30
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.57 E-value=2.5e-14 Score=143.14 Aligned_cols=156 Identities=14% Similarity=0.094 Sum_probs=124.0
Q ss_pred HHHHHHHHHh---CCceEEEECCHHHHHHHHHHcCCCceEEE---EecCCCCCCHHHHHHHHh-ccCCCcEEEEeccCCH
Q 006775 46 LRILEQMLRR---CLYNVTTCSQAAVALDILRERKGCFDVVL---SDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRV 118 (632)
Q Consensus 46 r~~L~~lL~~---~gy~V~~a~sg~eALe~L~e~~~~pDLVI---LDi~MPdmDGleLl~~Lr-~~~~iPIIvLSa~~d~ 118 (632)
|..++.+|.. .++.+..+.+++++++.+... .||++| +|+.||+++|++++++|+ ..+.+|||++|+.++.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~--~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~ 80 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRI--SFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIE 80 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccC--CCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCH
Confidence 5678888865 356678999999999988654 489998 688899999999999996 5678999999998877
Q ss_pred HHHHHHH-hcCCCEEEeCCCCHHHHHHHHHHHHHhhccccccccccCCccccccCCCChhhHHHHHHhhcCCchhhhhhh
Q 006775 119 SAVMRGI-RHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQR 197 (632)
Q Consensus 119 e~~~eAl-~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~~~~~~~~~~~le~~~~~~ls~~Eie~l~~v~eG~~~~~~~~~ 197 (632)
.....++ ++||.+|+.||.+.++|..+|+.++++............ .......++.+|.+++..+.+|..++.++.+
T Consensus 81 ~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~~~~~~~~~--~~~~~~~LT~RE~eVL~ll~~G~snkeIA~~ 158 (207)
T PRK11475 81 ARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQATDRLNNQW--YINQSRMLSPTEREILRFMSRGYSMPQIAEQ 158 (207)
T ss_pred HHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcccCHHHHHHh--hccCcCCCCHHHHHHHHHHHCCCCHHHHHHH
Confidence 7666666 799999999999999999999999886543322111100 0011346899999999999999999999998
Q ss_pred hhcccccc
Q 006775 198 KRISAKEE 205 (632)
Q Consensus 198 ~~is~k~~ 205 (632)
..++.+++
T Consensus 159 L~iS~~TV 166 (207)
T PRK11475 159 LERNIKTI 166 (207)
T ss_pred HCCCHHHH
Confidence 88887654
No 31
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.57 E-value=8.9e-14 Score=136.11 Aligned_cols=118 Identities=28% Similarity=0.412 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvL 112 (632)
|+||+|||++..+..+...|...++.+..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHL--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999999887654 999999999999999999999975 468999999
Q ss_pred eccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
++..+.+...++++.||++|+.||++..+|...+..++++.
T Consensus 79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999887653
No 32
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.56 E-value=2.1e-13 Score=132.23 Aligned_cols=119 Identities=29% Similarity=0.501 Sum_probs=108.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~---~~iPI 109 (632)
..+||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERG--PDLILLDWMLPGTSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcC--CCEEEEECCCCCCcHHHHHHHHHccccCCCCCE
Confidence 368999999999999999999988999999999999999887654 9999999999999999999999743 57899
Q ss_pred EEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 110 IvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
|++++..+.....++++.|+++|+.||++.++|...+..++++.
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 80 IMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999888754
No 33
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.56 E-value=1.2e-13 Score=134.88 Aligned_cols=118 Identities=22% Similarity=0.381 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLS 113 (632)
++||+|||++..+..+...|...++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++..+.+|+|+++
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l~ 80 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQ--HVDLILLDINLPGEDGLMLTRELRSRSTVGIILVT 80 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999999999999999988754 49999999999999999999999877789999999
Q ss_pred ccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
+..+.....++++.||+||+.||++.++|...+..++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 81 GRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred CCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999988999999999999999999999999999888753
No 34
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.55 E-value=1.9e-13 Score=133.81 Aligned_cols=117 Identities=32% Similarity=0.519 Sum_probs=107.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLS 113 (632)
.+||||||++..+..++..|...++.+..+.++.++++.+. . .||+||+|+.||+++|+++++.++....+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~--~~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-D--SIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh-c--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 48999999999999999999988999999999999999875 2 49999999999999999999999765559999999
Q ss_pred ccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
+..+.....++++.|+++|+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9999888899999999999999999999999999988754
No 35
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.55 E-value=1.4e-13 Score=135.01 Aligned_cols=117 Identities=21% Similarity=0.467 Sum_probs=107.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvL 112 (632)
|+||||||++..+..+...|...++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999999999998899999999999999987654 4999999999999999999999975 468999999
Q ss_pred eccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
|+..+.+...++++.||++|+.||++.++|...+..++++
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988764
No 36
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.54 E-value=4.2e-13 Score=131.46 Aligned_cols=117 Identities=27% Similarity=0.421 Sum_probs=107.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCC--CCHHHHHHHHhc-cCCCcEEE
Q 006775 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd--mDGleLl~~Lr~-~~~iPIIv 111 (632)
+||||||++..+..+...|+..++.+..+.++.+++..+.... ||+||+|+.||+ .+|+++++.++. .+.+|+|+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRL--PDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCC--CCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 6999999999999999999988999999999999999887654 999999999997 589999999975 46799999
Q ss_pred EeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
+|+..+......++++||++|+.||++.++|...++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988754
No 37
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.54 E-value=4.9e-13 Score=128.42 Aligned_cols=167 Identities=19% Similarity=0.255 Sum_probs=130.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CceEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPI 109 (632)
..+||||||++..+..++..|... ++.+. .+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~i 80 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTR--PVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV 80 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 468999999999999999999876 57765 688999999888754 4999999999999999999999975 467999
Q ss_pred EEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhcccccccc-----ccCCccccccCCCChhhHHHHHH
Q 006775 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE-----NSGSLEETDHHKRGSDEIEYASS 184 (632)
Q Consensus 110 IvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~~~~~~~-----~~~~le~~~~~~ls~~Eie~l~~ 184 (632)
|++|+..+.....++++.|+++|+.||++.++|..+++.++++......... ............++.+|.+++..
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~re~~vl~~ 160 (210)
T PRK09935 81 LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTDTVLSNREVTILRY 160 (210)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCceeCHHHHHHHHhcccccCccccccCCHHHHHHHHH
Confidence 9999999988899999999999999999999999999988765432111100 00000011223578899999999
Q ss_pred hhcCCchhhhhhhhhcc
Q 006775 185 VNEGTEGTFKAQRKRIS 201 (632)
Q Consensus 185 v~eG~~~~~~~~~~~is 201 (632)
+.+|.....++....++
T Consensus 161 l~~g~s~~eIa~~l~~s 177 (210)
T PRK09935 161 LVSGLSNKEIADQLLLS 177 (210)
T ss_pred HHcCCCHHHHHHHhCCC
Confidence 98887777666655433
No 38
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.53 E-value=2.9e-13 Score=133.02 Aligned_cols=117 Identities=29% Similarity=0.492 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~---~~iPII 110 (632)
.+||||||++..+..+...|...++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 6899999999999999999998899999999999999988754 49999999999999999999999753 578999
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
++++..+.....+++++||++|+.||++.++|...++.++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988765
No 39
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.53 E-value=2.7e-13 Score=134.66 Aligned_cols=118 Identities=19% Similarity=0.324 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLS 113 (632)
.+||||||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++.....|+|+++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~ 79 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILRE--QPDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLT 79 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 3899999999999999999999999999999999999988765 49999999999999999999999876678999999
Q ss_pred ccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
+..+.....++++.|++||+.||++..+|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9888888889999999999999999999999999887753
No 40
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.52 E-value=3.8e-13 Score=132.36 Aligned_cols=119 Identities=38% Similarity=0.589 Sum_probs=109.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvL 112 (632)
.++||||||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.||+.+|+++++.++..+.+|+|++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~l 83 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKE--QPDLVILDVMMPKLDGYGVCQEIRKESDVPIIML 83 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 57999999999999999999998899999999999999988654 4999999999999999999999986678999999
Q ss_pred eccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
|+..+.....++++.||++|+.||++.++|...+..++++.
T Consensus 84 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 84 TALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred ECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999988899999999999999999999999999887653
No 41
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.52 E-value=4e-14 Score=145.74 Aligned_cols=114 Identities=30% Similarity=0.509 Sum_probs=103.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvL 112 (632)
++|+|||||......|..+|.+.+..+.+|....+|++.+...+ |||||+|+.||+|+|++++++++. .+.+|||++
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~k--pDLifldI~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFK--PDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcC--CCEEEEEeecCCccHHHHHHHHHHhhccCcEEEE
Confidence 47999999999999999999999999999999999999998876 999999999999999999999974 578999999
Q ss_pred eccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
|++... ...++..-+.|||.||++++.|.++|.++.+
T Consensus 79 ssh~ey--a~dsf~~n~~dYl~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 79 SSHAEY--ADDSFGMNLDDYLPKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred ecchhh--hhhhcccchHhhccCCCCHHHHHHHHHHHhc
Confidence 998754 5567777789999999999999999998874
No 42
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.52 E-value=3.6e-13 Score=134.49 Aligned_cols=117 Identities=25% Similarity=0.458 Sum_probs=106.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEec
Q 006775 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSA 114 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa 114 (632)
+||||||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++....+|+|++++
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt~ 80 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASET--VDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISG 80 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEEC
Confidence 7999999999999999999999999999999999999887654 99999999999999999999998767899999998
Q ss_pred cC-CHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 115 DG-RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 115 ~~-d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
.. +.....++++.||++|+.||++.++|...++.++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 54 5666778999999999999999999999999887653
No 43
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.51 E-value=7.1e-13 Score=128.04 Aligned_cols=117 Identities=29% Similarity=0.502 Sum_probs=107.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 006775 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (632)
Q Consensus 36 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvLSa 114 (632)
|||+||++..+..+...|...++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||++++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~ 78 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKD--DYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTA 78 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEc
Confidence 58999999999999999998899999999999999988764 4999999999999999999999974 57899999999
Q ss_pred cCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 006775 115 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 115 ~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~ 154 (632)
..+.....+++++|+++|+.||++.++|...++.++++..
T Consensus 79 ~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~ 118 (218)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSH 118 (218)
T ss_pred CCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999998887543
No 44
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.51 E-value=3.6e-13 Score=134.49 Aligned_cols=162 Identities=12% Similarity=-0.021 Sum_probs=128.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCc---eEEEECCHHHHHHHHHHcCCCceEEEEecC--CCCCCHHHHHHHHh-ccCCC
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDGFKLLEHIG-LEMDL 107 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy---~V~~a~sg~eALe~L~e~~~~pDLVILDi~--MPdmDGleLl~~Lr-~~~~i 107 (632)
|.|+||||++.++..++.+|+..++ .+..+.++.++++.+... .||+||+|+. |+..+|.+++++|+ ..+.+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~--~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~ 78 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSL--RPSVVFINEDCFIHDASNSQRIKQIINQHPNT 78 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhcc--CCCEEEEeCcccCCCCChHHHHHHHHHHCCCC
Confidence 4699999999999999999986542 456889999999988654 4999999966 88889999999996 46789
Q ss_pred cEEEEeccCCHHHHHHHHhcCCCE-EEeCCCCHHHHHHHHHHHHHhhccccccccccCCccccccCCCChhhHHHHHHhh
Q 006775 108 PVIMMSADGRVSAVMRGIRHGACD-YLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVN 186 (632)
Q Consensus 108 PIIvLSa~~d~e~~~eAl~~GA~D-YL~KP~~~eeL~~~L~~vlrk~~~~~~~~~~~~~le~~~~~~ls~~Eie~l~~v~ 186 (632)
+||++|+..+..... ++..|+.. |+.|+.+.++|..+++.+.++........ .. ....++.+|.+++..+.
T Consensus 79 ~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~~~~~------~~-~~~~LT~RE~eVL~lla 150 (207)
T PRK15411 79 LFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETTITSFL------NL-PTLSLSRTESSMLRMWM 150 (207)
T ss_pred eEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcccCccc------cC-CcccCCHHHHHHHHHHH
Confidence 999999987776543 55555544 88999999999999999987654322110 00 11249999999999999
Q ss_pred cCCchhhhhhhhhcccccc
Q 006775 187 EGTEGTFKAQRKRISAKEE 205 (632)
Q Consensus 187 eG~~~~~~~~~~~is~k~~ 205 (632)
+|.+.+.++.+..++.+++
T Consensus 151 ~G~snkeIA~~L~iS~~TV 169 (207)
T PRK15411 151 AGQGTIQISDQMNIKAKTV 169 (207)
T ss_pred cCCCHHHHHHHcCCCHHHH
Confidence 9999999999888887654
No 45
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.51 E-value=5.3e-13 Score=132.26 Aligned_cols=119 Identities=29% Similarity=0.489 Sum_probs=109.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIv 111 (632)
..+||||||++..+..+...|...++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ 82 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRE--SFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999999999999999999999999988764 4999999999999999999999975 36899999
Q ss_pred EeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
+++..+......+++.|+++|+.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999887653
No 46
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.51 E-value=1.1e-13 Score=139.33 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=127.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHH-HHHh-ccCCCcEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL-EHIG-LEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl-~~Lr-~~~~iPII 110 (632)
..++++|||++..+..|+.+|+.....+..+.++.++++.+. .||+||+|+.||+++|++++ +.++ ..+.++||
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vv 85 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKIL 85 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhCCCCcEE
Confidence 457999999999999999999854444567889999988642 38999999999999999997 5565 45789999
Q ss_pred EEeccCCHHHHHHHHh--cCCCEEEeCCCCHHHHHHHHHHHHHhhcccccccc-----ccCCc--cccccCCCChhhHHH
Q 006775 111 MMSADGRVSAVMRGIR--HGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE-----NSGSL--EETDHHKRGSDEIEY 181 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~--~GA~DYL~KP~~~eeL~~~L~~vlrk~~~~~~~~~-----~~~~l--e~~~~~~ls~~Eie~ 181 (632)
++|+..+. ...++. .||.+|+.|+.+.++|.++|+.+.++......... ..... .......++.+|.++
T Consensus 86 vlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lt~rE~~V 163 (216)
T PRK10100 86 LLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEI 163 (216)
T ss_pred EEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcccCHHHHHHHHHhhcccccCCCccCCCCHHHHHH
Confidence 99998763 445555 59999999999999999999999876543222110 00000 001124589999999
Q ss_pred HHHhhcCCchhhhhhhhhcccccc
Q 006775 182 ASSVNEGTEGTFKAQRKRISAKEE 205 (632)
Q Consensus 182 l~~v~eG~~~~~~~~~~~is~k~~ 205 (632)
+..+..|..+..++....++.++.
T Consensus 164 l~l~~~G~s~~eIA~~L~iS~~TV 187 (216)
T PRK10100 164 LNKLRIGASNNEIARSLFISENTV 187 (216)
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHH
Confidence 999999999999988877776544
No 47
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.50 E-value=5.1e-13 Score=129.93 Aligned_cols=118 Identities=29% Similarity=0.419 Sum_probs=107.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~-~~iPIIvL 112 (632)
++||||||++..++.+...|...++.+..+.++.+++..+... .||+||+|+.||+.+|+++++.++.. +.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 81 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQ--PPDLVILDVGLPDISGFELCRQLLAFHPALPVIFL 81 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 5899999999999999999998899999999999999988654 49999999999999999999999754 78999999
Q ss_pred eccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
++..+......+++.||++|+.||++.++|..+++.++++.
T Consensus 82 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 82 TARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 99998888889999999999999999999999998877653
No 48
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.50 E-value=1.7e-13 Score=129.47 Aligned_cols=112 Identities=24% Similarity=0.454 Sum_probs=105.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006775 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvLS 113 (632)
..||||||..+...|...++..||.|.++.+.++|+..++... |+-.++|+.|.+.+|+++++.|+. ..+..||++|
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~--PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAP--PAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCC--CceEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 6899999999999999999999999999999999999998765 999999999999999999999974 5789999999
Q ss_pred ccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHH
Q 006775 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 148 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~ 148 (632)
++.+...+.+|++.||++||.||-+.+++..++..
T Consensus 89 Gy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 89 GYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred cchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 99999999999999999999999999998877653
No 49
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.49 E-value=5.7e-13 Score=157.39 Aligned_cols=150 Identities=21% Similarity=0.238 Sum_probs=127.5
Q ss_pred ChhHHHHHHHcCC-------CCCCCcccccccCCCCC---------------CCccEEEEEeCCHHHHHHHHHHHHhCCc
Q 006775 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQF---------------PAGLRVLVVDDDITCLRILEQMLRRCLY 58 (632)
Q Consensus 1 LaI~~~lv~~mGG-------~g~Gs~~~~~~~~p~~~---------------p~glrVLIVDDd~~~r~~L~~lL~~~gy 58 (632)
|+|++++++.||| .|.|++|++.+|..... ..+.+||||||++..+..+...|...||
T Consensus 643 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~ 722 (828)
T PRK13837 643 LATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQAFFGPGPLPRGRGETVLLVEPDDATLERYEEKLAALGY 722 (828)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCccccCCCcccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCC
Confidence 6899999999999 35666666655432111 1246899999999999999999999999
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCC
Q 006775 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (632)
Q Consensus 59 ~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~ 137 (632)
++..+.++.++++.+......||+||+ .||+++|+++++.++. .+.+|||++++........+++..| ++||.||+
T Consensus 723 ~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~ 799 (828)
T PRK13837 723 EPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPIILGGNSKTMALSPDLLASV-AEILAKPI 799 (828)
T ss_pred EEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCC
Confidence 999999999999998765445899999 6999999999999964 5789999999999888888999999 99999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 006775 138 REEELKNIWQHVVRKR 153 (632)
Q Consensus 138 ~~eeL~~~L~~vlrk~ 153 (632)
+..+|..+++++++..
T Consensus 800 ~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 800 SSRTLAYALRTALATA 815 (828)
T ss_pred CHHHHHHHHHHHHccc
Confidence 9999999999887643
No 50
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.48 E-value=1.9e-13 Score=160.44 Aligned_cols=118 Identities=30% Similarity=0.499 Sum_probs=109.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc--CCCcE
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDLPV 109 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~--~~iPI 109 (632)
.+.+||||||+...+...+.+|+..|.+++.+.++.+|++.+.. .+.||+||+|++||.|||++..++||+. ..+||
T Consensus 665 ~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~pI 743 (786)
T KOG0519|consen 665 TGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKERWHLPI 743 (786)
T ss_pred cCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhcCCCCE
Confidence 57899999999999999999999999999999999999999972 3469999999999999999999999754 48999
Q ss_pred EEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Q 006775 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 110 IvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
|++|++.+.+...++++.|.++||.||++.+.|..++++.+
T Consensus 744 vAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 744 VALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred EEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998888765
No 51
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.47 E-value=3.6e-12 Score=123.36 Aligned_cols=118 Identities=28% Similarity=0.504 Sum_probs=107.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvL 112 (632)
++||++||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.+|+.+|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSE--MYALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 5799999999999999999998899999999999999887654 4999999999999999999999964 467999999
Q ss_pred eccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
+...+.....++++.|+++|+.||++.++|...++.++++.
T Consensus 79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 99999888899999999999999999999999999887754
No 52
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.46 E-value=4.1e-12 Score=120.47 Aligned_cols=169 Identities=18% Similarity=0.237 Sum_probs=131.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CceE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~-gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPI 109 (632)
.++|||+||++..+..+...|... ++.+ ..+.++.+++..+... .||+||+|+.+++++|+++++.++. .+..|+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 80 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQL--EPDIVILDLGLPGMNGLDVIPQLHQRWPAMNI 80 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHCCCCcE
Confidence 478999999999999999999865 4554 4788999999887654 4999999999999999999999974 467899
Q ss_pred EEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhccccccc-----cccCCccccccCCCChhhHHHHHH
Q 006775 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH-----ENSGSLEETDHHKRGSDEIEYASS 184 (632)
Q Consensus 110 IvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~~~~~~-----~~~~~le~~~~~~ls~~Eie~l~~ 184 (632)
|+++...+......++..|+.+|+.||++..+|...+..+++......... .............++.+|.+++..
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~e~~vl~l 160 (211)
T PRK15369 81 LVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRYIDPALNREAILALLNADDTNPPLLTPRERQILKL 160 (211)
T ss_pred EEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCceeCHHHHHHHHHHhccCCCCcccCCCHHHHHHHHH
Confidence 999999999989999999999999999999999999998876432211100 000000112234588899999999
Q ss_pred hhcCCchhhhhhhhhcccc
Q 006775 185 VNEGTEGTFKAQRKRISAK 203 (632)
Q Consensus 185 v~eG~~~~~~~~~~~is~k 203 (632)
+.+|.....++....++.+
T Consensus 161 ~~~g~~~~~Ia~~l~~s~~ 179 (211)
T PRK15369 161 ITEGYTNRDIAEQLSISIK 179 (211)
T ss_pred HHCCCCHHHHHHHhCCCHH
Confidence 9998877777765544433
No 53
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.45 E-value=4.6e-12 Score=121.73 Aligned_cols=169 Identities=18% Similarity=0.292 Sum_probs=131.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CceE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~-gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iP 108 (632)
...+||||||++..+..+...|... ++.+ ..+.++.+++..+... .||+||+|+.+++.+|+++++.++. .+..|
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~ 82 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMNGLETLDKLREKSLSGR 82 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 3468999999999999999999764 4554 4688999999988765 4999999999999999999999964 46789
Q ss_pred EEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhccccccc----c-c-cC--CccccccCCCChhhHH
Q 006775 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH----E-N-SG--SLEETDHHKRGSDEIE 180 (632)
Q Consensus 109 IIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~~~~~~----~-~-~~--~le~~~~~~ls~~Eie 180 (632)
+|+++...+......+++.|+++|+.||++.++|...+..++++........ . . .. .........++.+|.+
T Consensus 83 vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 162 (216)
T PRK10651 83 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERD 162 (216)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHHhhcccCccccccccCCHHHHH
Confidence 9999999998888999999999999999999999999999886532211110 0 0 00 0001112348899999
Q ss_pred HHHHhhcCCchhhhhhhhhccc
Q 006775 181 YASSVNEGTEGTFKAQRKRISA 202 (632)
Q Consensus 181 ~l~~v~eG~~~~~~~~~~~is~ 202 (632)
++..+.+|..+..++....++.
T Consensus 163 vl~~l~~g~~~~~ia~~l~is~ 184 (216)
T PRK10651 163 ILKLIAQGLPNKMIARRLDITE 184 (216)
T ss_pred HHHHHHcCCCHHHHHHHcCCCH
Confidence 9999999987777776555443
No 54
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.45 E-value=2.1e-12 Score=128.58 Aligned_cols=115 Identities=26% Similarity=0.420 Sum_probs=98.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-ce-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCL-YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~g-y~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIv 111 (632)
++|+||||++..+..++.+|+..+ +. +..+.++.++++.+... .||++|+|+.||+++|+++++.++.....+||+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii~ 79 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRL--KPDVVFLDIQMPRISGLELVGMLDPEHMPYIVF 79 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHhcccCCCEEEE
Confidence 689999999999999999998876 33 45789999999988764 499999999999999999999986444456888
Q ss_pred EeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
+|++. +...++++.|+.+|+.||++.++|..++.++.+.
T Consensus 80 vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 80 VTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 88765 4567899999999999999999999999988654
No 55
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.44 E-value=1.4e-12 Score=123.09 Aligned_cols=162 Identities=25% Similarity=0.358 Sum_probs=123.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPII 110 (632)
...+|||+||++..+..+...|...++.+..+.++.++++.+... .||+||+|+.+++++|+++++.++. .+.+|+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii 79 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGL--RFGCVVTDVRMPGIDGIELLRRLKARGSPLPVI 79 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccC--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEE
Confidence 346899999999999999999998899999999999999888654 4999999999999999999999964 4678999
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhccccccccccCCccccccCCCChhhHHHHHHhhcCCc
Q 006775 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTE 190 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~~~~~~~~~~~le~~~~~~ls~~Eie~l~~v~eG~~ 190 (632)
+++...+......+++.|+.+|+.||+..+++...+..++................ ......++.++.+++..+..|..
T Consensus 80 ~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~e~~vl~~~~~~~~ 158 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQAPEAAKSEAVAADI-RARIASLSERERQVMDGLVAGLS 158 (202)
T ss_pred EEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhhhhcccchhHHHHH-HHHHHhhhhhHHHHHHHHHccCc
Confidence 99999998999999999999999999999999998888776432111100000000 11123355666667666555555
Q ss_pred hhhhhh
Q 006775 191 GTFKAQ 196 (632)
Q Consensus 191 ~~~~~~ 196 (632)
...++.
T Consensus 159 ~~~ia~ 164 (202)
T PRK09390 159 NKVIAR 164 (202)
T ss_pred hHHHHH
Confidence 444444
No 56
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.44 E-value=3.7e-12 Score=121.99 Aligned_cols=165 Identities=22% Similarity=0.236 Sum_probs=127.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCceEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~-~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPI 109 (632)
.++||||||++..+..+...|.. .++.+. .+.+..+++..+... .||+||+|+.+++++|+++++.++. .+..|+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRL--DPDVILLDLNMKGMSGLDTLNALRRDGVTAQI 83 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCcHHHHHHHHHHhCCCCeE
Confidence 47899999999999999999975 467664 688999999887654 4999999999999999999999974 457899
Q ss_pred EEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhccccccc----cc-cC-CccccccCCCChhhHHHHH
Q 006775 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH----EN-SG-SLEETDHHKRGSDEIEYAS 183 (632)
Q Consensus 110 IvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~~~~~~----~~-~~-~le~~~~~~ls~~Eie~l~ 183 (632)
|+++...+......+++.|+++|+.||++.++|..+++.++++........ .. .. .........++.+|.+++.
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~e~~vl~ 163 (215)
T PRK10403 84 IILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELDVLH 163 (215)
T ss_pred EEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCCeecCHHHHHHHHhhhccCCCCcccccCCHHHHHHHH
Confidence 999988888888899999999999999999999999998765432211100 00 00 0011112357899999999
Q ss_pred HhhcCCchhhhhhhhh
Q 006775 184 SVNEGTEGTFKAQRKR 199 (632)
Q Consensus 184 ~v~eG~~~~~~~~~~~ 199 (632)
.+.+|.+...++....
T Consensus 164 ~~~~g~s~~~ia~~l~ 179 (215)
T PRK10403 164 ELAQGLSNKQIASVLN 179 (215)
T ss_pred HHHCCCCHHHHHHHcC
Confidence 9998877766655443
No 57
>PRK14084 two-component response regulator; Provisional
Probab=99.44 E-value=2.7e-12 Score=128.77 Aligned_cols=115 Identities=19% Similarity=0.369 Sum_probs=99.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-c-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCL-Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~g-y-~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~-~~iPII 110 (632)
++||||||++..+..+..+|...+ + .+..+.++.+++..+.+. .||++|+|+.||+++|+++++.++.. +..+||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~--~~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI 78 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLIN--QYDIIFLDINLMDESGIELAAKIQKMKEPPAII 78 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999998754 4 567899999999988764 49999999999999999999999754 456788
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
++|+..+ ...++++.|+.+|+.||++.++|..++.++.+.
T Consensus 79 ~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 79 FATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred EEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 8887653 567899999999999999999999999988754
No 58
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.43 E-value=3.1e-12 Score=130.12 Aligned_cols=118 Identities=28% Similarity=0.427 Sum_probs=104.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CceE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-C--CC
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-M--DL 107 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~-gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~-~--~i 107 (632)
.++||||||++..+..+...|... ++.+ ..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. . ..
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQ--PDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 479999999999999999999864 4454 47999999999988654 9999999999999999999999743 2 37
Q ss_pred cEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 108 PIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
|||++|+..+.....++++.|+++|+.||++.++|...++++++.
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 899999999999899999999999999999999999999887654
No 59
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.42 E-value=9.6e-13 Score=141.72 Aligned_cols=118 Identities=22% Similarity=0.431 Sum_probs=105.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCc
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~---~~~iP 108 (632)
...+||||||++..+..+..+|.+ .+.+..+.++.+|+..+.+. .||+||+|+.||+++|+++++.++. .+.+|
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~--~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAET--NYDLVIVSANFENYDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccC--CCCEEEecCCCCCchHhHHHHHHHhccccCCCc
Confidence 467899999999999999999976 47777899999999987654 4999999999999999999999974 36899
Q ss_pred EEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 109 IIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
||++|++.+.+...++++.||+||+.||++.++|...+....+.
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888776543
No 60
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.40 E-value=8.7e-12 Score=122.72 Aligned_cols=117 Identities=27% Similarity=0.429 Sum_probs=107.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLS 113 (632)
.+||||||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|+|+++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~ 88 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQT--PPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVT 88 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 3899999999999999999999899999999999999988754 49999999999999999999999876789999999
Q ss_pred ccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
...+......+++.|+++|+.||++.++|...++.++++
T Consensus 89 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~ 127 (240)
T PRK10710 89 AKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhh
Confidence 998888888999999999999999999999999887764
No 61
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.40 E-value=3e-12 Score=139.85 Aligned_cols=119 Identities=37% Similarity=0.628 Sum_probs=109.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPII 110 (632)
..++||||||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ--VFDLVLCDVRMAEMDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEE
Confidence 358999999999999999999999999999999999999988754 4999999999999999999999964 5678999
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
++|++.+.+...++++.|+.+|+.||++.++|...+.++++.
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred EEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887754
No 62
>PRK13557 histidine kinase; Provisional
Probab=99.40 E-value=6.6e-12 Score=138.17 Aligned_cols=150 Identities=23% Similarity=0.316 Sum_probs=126.1
Q ss_pred ChhHHHHHHHcCC-------CCCCCcccccccCCCC--------------CCCccEEEEEeCCHHHHHHHHHHHHhCCce
Q 006775 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQ--------------FPAGLRVLVVDDDITCLRILEQMLRRCLYN 59 (632)
Q Consensus 1 LaI~~~lv~~mGG-------~g~Gs~~~~~~~~p~~--------------~p~glrVLIVDDd~~~r~~L~~lL~~~gy~ 59 (632)
|+|++++++.+|| .|.|+.|++.+|.... ...+.+||||||++..+..+..+|...+|.
T Consensus 362 L~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~ 441 (540)
T PRK13557 362 LSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPEQEPKARAIDRGGTETILIVDDRPDVAELARMILEDFGYR 441 (540)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCCCCCCCcccccCCCceEEEEcCcHHHHHHHHHHHHhcCCe
Confidence 6899999999999 3566666665543211 012468999999999999999999988999
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEecCCCC-CCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCC
Q 006775 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (632)
Q Consensus 60 V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-mDGleLl~~Lr~-~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~ 137 (632)
+..+.++.++++.+... ..||+||+|..|++ ++|+++++.|+. .+.+|+|+++...+......++..|+.+|+.||+
T Consensus 442 v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~ 520 (540)
T PRK13557 442 TLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVLLTTGYAEASIERTDAGGSEFDILNKPY 520 (540)
T ss_pred EEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEEEEcCCCchhhhhhhccccCCceeeCCC
Confidence 99999999999988643 24999999999997 999999999974 4678999999988888888888999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 006775 138 REEELKNIWQHVVR 151 (632)
Q Consensus 138 ~~eeL~~~L~~vlr 151 (632)
+.++|...++.++.
T Consensus 521 ~~~~l~~~l~~~~~ 534 (540)
T PRK13557 521 RRAELARRVRMVLD 534 (540)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999887764
No 63
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.39 E-value=5.3e-12 Score=138.66 Aligned_cols=119 Identities=34% Similarity=0.525 Sum_probs=108.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006775 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (632)
Q Consensus 31 p~glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPI 109 (632)
+...+||||||++..+..+...|...+|.+..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 2 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlillD~~~p~~~g~~ll~~i~~~~~~~pv 79 (457)
T PRK11361 2 TAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI--HPDVVLMDIRMPEMDGIKALKEMRSHETRTPV 79 (457)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 3456899999999999999999999999999999999999988765 4999999999999999999999964 467999
Q ss_pred EEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 110 IvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
|++|+..+.+...++++.|++||+.||++.++|...++.++.
T Consensus 80 I~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 80 ILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred EEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999988877654
No 64
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.38 E-value=7.6e-12 Score=138.29 Aligned_cols=117 Identities=35% Similarity=0.493 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvL 112 (632)
.+||||||++..+..++.+|...+|.+..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~--~~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvl 81 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASK--TPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 5899999999999999999999999999999999999998765 4999999999999999999999974 467999999
Q ss_pred eccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
|+..+.+...++++.|+.+|+.||++.++|...+.+++..
T Consensus 82 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred ECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887754
No 65
>PRK15115 response regulator GlrR; Provisional
Probab=99.38 E-value=6.5e-12 Score=137.78 Aligned_cols=118 Identities=29% Similarity=0.522 Sum_probs=108.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr-~~~~iPIIv 111 (632)
..+||||||++..+..+...|...++.+..+.++.+|+..+... .||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~--~~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIv 82 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNRE--KVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVII 82 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 47899999999999999999999999999999999999988764 499999999999999999999996 456789999
Q ss_pred EeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
+|+..+.....++++.|+.+|+.||++.++|...+..+++.
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988764
No 66
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.37 E-value=1.1e-12 Score=137.44 Aligned_cols=63 Identities=57% Similarity=0.869 Sum_probs=60.8
Q ss_pred CCCCCcccchHHHHHHHHHHHHHhccccccHHHHHHHhcCCCcChHHHHHHHHHHHHHHHHHh
Q 006775 217 TTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLN 279 (632)
Q Consensus 217 ~~kK~rv~wt~ELh~qFl~av~~Lgidka~pK~ILelM~v~gltre~taSHLqRvr~ylk~L~ 279 (632)
..||+|++|+.+||++|++||++||.++|+||+|+++|++.++||++|+|||||||.+.+++.
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~ 294 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLA 294 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccccc
Confidence 578999999999999999999999999999999999999999999999999999999999883
No 67
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.36 E-value=9.1e-12 Score=136.66 Aligned_cols=112 Identities=25% Similarity=0.412 Sum_probs=102.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCC-----CCHHHHHHHHh-ccCCCcE
Q 006775 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIG-LEMDLPV 109 (632)
Q Consensus 36 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-----mDGleLl~~Lr-~~~~iPI 109 (632)
||||||++..+..+...| .+|.+..+.++.+|++.+... .||+||+|+.||+ ++|+++++.++ ..+.+||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~--~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999888 689999999999999999865 4999999999996 89999999996 4578999
Q ss_pred EEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 110 IvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
|++|+..+.+...++++.||+||+.||++.++|..+++.+++
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999887765
No 68
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.36 E-value=1.2e-11 Score=131.67 Aligned_cols=115 Identities=24% Similarity=0.327 Sum_probs=96.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCceEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006775 34 LRVLVVDDDITCLRILEQMLR-RCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~-~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIv 111 (632)
++||||||++..+..++.+|. ..++.+. .+.++.+|++.+.... ||+|++|+.||+++|++++++|+....+|+|+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~~--pDlVllD~~mp~~~G~e~l~~l~~~~~~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQP--PDVILMDLEMPRMDGVEATRRIMAERPCPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhccC--CCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999994 5577775 7899999999987654 99999999999999999999997666799999
Q ss_pred EeccCC--HHHHHHHHhcCCCEEEeCCC---------CHHHHHHHHHHHH
Q 006775 112 MSADGR--VSAVMRGIRHGACDYLIKPI---------REEELKNIWQHVV 150 (632)
Q Consensus 112 LSa~~d--~e~~~eAl~~GA~DYL~KP~---------~~eeL~~~L~~vl 150 (632)
+++..+ .....++++.|+.+|+.||+ ..++|...++.+.
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 998743 55677899999999999999 3444555555443
No 69
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.33 E-value=8.5e-11 Score=101.14 Aligned_cols=119 Identities=33% Similarity=0.562 Sum_probs=104.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCce-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCC
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDL 107 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~gy~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~---~~i 107 (632)
+.++|+++|+++.....++..|...++. +..+.+..+++..+... .+|++++|..+++.+|+++++.++.. +.+
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~ 81 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFVISDWNMPNMDGLELLKTIRADGAMSAL 81 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhcc--CCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCC
Confidence 3479999999999999999999988884 77888999999887654 49999999999999999999999743 468
Q ss_pred cEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 108 PIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
|+|+++...+.....++++.|+.+|+.||++.+++...+++++++
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 82 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred cEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 999999888888888999999999999999999999999887654
No 70
>PRK13435 response regulator; Provisional
Probab=99.33 E-value=3.8e-11 Score=110.75 Aligned_cols=117 Identities=21% Similarity=0.292 Sum_probs=100.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEE-EECCHHHHHHHHHHcCCCceEEEEecCCC-CCCHHHHHHHHhccCCCcEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MP-dmDGleLl~~Lr~~~~iPII 110 (632)
.++|||+|+++.....+...|...++.+. .+.++.++++.+... .||+||+|+.++ +.+|+++++.++..+.+|+|
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~dliivd~~~~~~~~~~~~~~~l~~~~~~pii 82 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRR--QPDVALVDVHLADGPTGVEVARRLSADGGVEVV 82 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhc--CCCEEEEeeecCCCCcHHHHHHHHHhCCCCCEE
Confidence 57999999999999999999998888876 789999999988654 499999999998 58999999999766789999
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 006775 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~ 154 (632)
+++...+. ..++..|+++|+.||++.++|...++++..++.
T Consensus 83 ~ls~~~~~---~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (145)
T PRK13435 83 FMTGNPER---VPHDFAGALGVIAKPYSPRGVARALSYLSARRV 123 (145)
T ss_pred EEeCCHHH---HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence 99876442 467789999999999999999999998876543
No 71
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.33 E-value=1.9e-11 Score=134.67 Aligned_cols=115 Identities=35% Similarity=0.516 Sum_probs=105.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 006775 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (632)
Q Consensus 36 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvLSa 114 (632)
||||||++..+..+...|...++.+..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||++|+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~ 78 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARG--QPDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTA 78 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeC
Confidence 68999999999999999999999999999999999988764 4999999999999999999999964 46789999999
Q ss_pred cCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 115 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 115 ~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
..+.....++++.|+++|+.||++.++|...+.+++..
T Consensus 79 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 79 HSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887653
No 72
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.30 E-value=5.7e-11 Score=128.04 Aligned_cols=118 Identities=35% Similarity=0.513 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~---~~iPII 110 (632)
.+||||||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.||+.+|+++++.++.. +.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICERE--QPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 4799999999999999999988899999999999999998765 49999999999999999999999753 468999
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
++++..+.....++++.|+++|+.||++.++|..++..+++.+
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998877643
No 73
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.28 E-value=7.2e-11 Score=126.30 Aligned_cols=104 Identities=33% Similarity=0.454 Sum_probs=90.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CceEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~-gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPII 110 (632)
.++||||||++..+..+..+|... ++.+. .+.++.++++.+.... ||+|++|+.||+++|++++++|+....+|+|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~--~DlVllD~~mp~~dgle~l~~i~~~~~~piI 80 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLN--PDVITLDVEMPVMDGLDALEKIMRLRPTPVV 80 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhC--CCEEEEeCCCCCCChHHHHHHHHHhCCCCEE
Confidence 479999999999999999999876 77776 8999999999887654 9999999999999999999999755459999
Q ss_pred EEeccC--CHHHHHHHHhcCCCEEEeCCCC
Q 006775 111 MMSADG--RVSAVMRGIRHGACDYLIKPIR 138 (632)
Q Consensus 111 vLSa~~--d~e~~~eAl~~GA~DYL~KP~~ 138 (632)
++|+.. ......++++.|++||+.||+.
T Consensus 81 vls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 81 MVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred EEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 999753 3456678999999999999984
No 74
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.25 E-value=4.7e-11 Score=127.46 Aligned_cols=104 Identities=35% Similarity=0.467 Sum_probs=93.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--ceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPII 110 (632)
.+|||||||....|..++++|...+ +.|.++.++.+|++.+.+.. ||+|.+|+.||.|||+++++.|.....+|||
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~--PDVi~ld~emp~mdgl~~l~~im~~~p~pVi 78 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLK--PDVITLDVEMPVMDGLEALRKIMRLRPLPVI 78 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC--CCEEEEecccccccHHHHHHHHhcCCCCcEE
Confidence 3799999999999999999999887 56779999999999998876 9999999999999999999999777899999
Q ss_pred EEeccC--CHHHHHHHHhcCCCEEEeCCCC
Q 006775 111 MMSADG--RVSAVMRGIRHGACDYLIKPIR 138 (632)
Q Consensus 111 vLSa~~--d~e~~~eAl~~GA~DYL~KP~~ 138 (632)
|+++.. ..+...+++++||.||+.||..
T Consensus 79 mvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 79 MVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 998744 3567789999999999999963
No 75
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.25 E-value=6.7e-11 Score=135.94 Aligned_cols=118 Identities=20% Similarity=0.228 Sum_probs=103.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIv 111 (632)
.++||||||++..+..+..+|...+|.+..+.++.+++..+... .||+||+|+.||+++|++++++++. .+.+|||+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~--~~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~ 84 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAG--EIDCVVADHEPDGFDGLALLEAVRQTTAVPPVVV 84 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhcc--CCCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEE
Confidence 47999999999999999999988899999999999999988754 4999999999999999999999974 56899999
Q ss_pred EeccCCHHHHHHHHhcCCCEEEeCCCCHH--HHHHHHHHHHHh
Q 006775 112 MSADGRVSAVMRGIRHGACDYLIKPIREE--ELKNIWQHVVRK 152 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~e--eL~~~L~~vlrk 152 (632)
+|+..+.+...++++.|+.+|+.||.... .+..+++.++..
T Consensus 85 lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 85 VPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999997543 555556555543
No 76
>PRK09191 two-component response regulator; Provisional
Probab=99.15 E-value=7.4e-10 Score=111.80 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=98.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEE-EECCHHHHHHHHHHcCCCceEEEEecCCCC-CCHHHHHHHHhccCCCcEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~sg~eALe~L~e~~~~pDLVILDi~MPd-mDGleLl~~Lr~~~~iPII 110 (632)
..+|||+||++..+..++..|+..++.+. .+.++.++++.+... .||+||+|+.||+ ++|+++++.++....+|||
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~--~~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii 214 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKT--RPGLILADIQLADGSSGIDAVNDILKTFDVPVI 214 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhcc--CCCEEEEecCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 45799999999999999999998888877 688999999988764 4999999999995 8999999999754489999
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
++|+..+... .+...++.+|+.||++.++|...+++++..
T Consensus 215 ~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 215 FITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 9998776543 334567889999999999999999887643
No 77
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.11 E-value=6.8e-10 Score=109.23 Aligned_cols=119 Identities=24% Similarity=0.329 Sum_probs=102.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIv 111 (632)
.++||++||++..+..+...|...||.+ ..+.++.++.+.+.... ||+||+|+.||..|-.+-+.....+...|||+
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~--pDvVildie~p~rd~~e~~~~~~~~~~~piv~ 82 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQ--PDVVILDIEMPRRDIIEALLLASENVARPIVA 82 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcC--CCEEEEecCCCCccHHHHHHHhhcCCCCCEEE
Confidence 5789999999999999999999999875 56777888888877665 99999999999988444444444567889999
Q ss_pred EeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
+|++.+...+..+++.|+.+|+.||++...|..++.-+..+.
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf 124 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRF 124 (194)
T ss_pred EEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999888776543
No 78
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.09 E-value=2.3e-09 Score=87.64 Aligned_cols=111 Identities=35% Similarity=0.565 Sum_probs=97.9
Q ss_pred EEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecc
Q 006775 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSAD 115 (632)
Q Consensus 37 LIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvLSa~ 115 (632)
+++|+++..+..+...+...++.+..+.+..+++..+... .+|++|+|..+++.+|+++++.++. .+.+|+++++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE--KPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhC--CCCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEec
Confidence 4789999999999999998899999999999999988764 4999999999999999999999964 467899999988
Q ss_pred CCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHH
Q 006775 116 GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 116 ~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
.......++++.|+.+|+.||++.++|...+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 7778888899999999999999999998877653
No 79
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=99.03 E-value=9.8e-11 Score=125.73 Aligned_cols=73 Identities=11% Similarity=0.236 Sum_probs=67.2
Q ss_pred CcChHHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee--eeeccCCCCChHHHHHHHHh-hcCC
Q 006775 258 GLTRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI--QALAASGQIPPQTLAALHAE-LLGR 333 (632)
Q Consensus 258 gltre~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i--~iL~KpGkL~~ee~~imq~~-~iG~ 333 (632)
....+.|..|-.|+..|+..| |+++||+++.++.+..|+.||||||++| +||.|||+||++||++||.| ..|+
T Consensus 143 ~~kd~~t~~Hs~~va~~a~~i---a~~lgl~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt~eE~~~ik~H~~~g~ 218 (344)
T COG2206 143 KAKDDYTYGHSVRVAELAEAI---AKKLGLSEEKIEELALAGLLHDIGKIGIPDSILNKPGKLTEEEFEIIKKHPIYGY 218 (344)
T ss_pred cccchhHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHhhcccccCCHHHhCCCCCCCHHHHHHHHhchHHHH
Confidence 334457999999999999999 9999999999999999999999999999 99999999999999999995 4465
No 80
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.99 E-value=8.3e-10 Score=89.08 Aligned_cols=54 Identities=69% Similarity=1.065 Sum_probs=51.6
Q ss_pred CCcccchHHHHHHHHHHHHHhcc-ccccHHHHHHHhcCCCcChHHHHHHHHHHHH
Q 006775 220 KPRVVWSVELHQQFVSAVNQLGI-DKAVPKRILELMNVPGLTRENVASHLQKFRL 273 (632)
Q Consensus 220 K~rv~wt~ELh~qFl~av~~Lgi-dka~pK~ILelM~v~gltre~taSHLqRvr~ 273 (632)
|+++.|+.|+|..|++++..+|. +.|+||+|+++|++.++|+.+|+||+|||++
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 57899999999999999999998 8999999999999999999999999999985
No 81
>PRK10693 response regulator of RpoS; Provisional
Probab=98.95 E-value=5.5e-09 Score=110.12 Aligned_cols=89 Identities=25% Similarity=0.466 Sum_probs=79.3
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCC-CH
Q 006775 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI-RE 139 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~-~~ 139 (632)
.+.++.+|++.+... .||+||+|+.||+++|++++++++. .+.+|||++|+..+.+...++++.|++||+.||+ +.
T Consensus 2 ~a~~g~~al~~l~~~--~pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~ 79 (303)
T PRK10693 2 LAANGVDALELLGGF--TPDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDL 79 (303)
T ss_pred EeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcH
Confidence 467899999988764 4999999999999999999999974 4679999999999999999999999999999999 58
Q ss_pred HHHHHHHHHHHHh
Q 006775 140 EELKNIWQHVVRK 152 (632)
Q Consensus 140 eeL~~~L~~vlrk 152 (632)
++|..++.++++.
T Consensus 80 ~~L~~~i~~~l~~ 92 (303)
T PRK10693 80 NRLREMVFACLYP 92 (303)
T ss_pred HHHHHHHHHHhhh
Confidence 9999988887754
No 82
>PRK15029 arginine decarboxylase; Provisional
Probab=98.91 E-value=1e-08 Score=119.75 Aligned_cols=119 Identities=12% Similarity=0.173 Sum_probs=93.8
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHH----HHHHHH
Q 006775 34 LRVLVVDDDIT--------CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF----KLLEHI 101 (632)
Q Consensus 34 lrVLIVDDd~~--------~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGl----eLl~~L 101 (632)
|||||||||.. .++.|+..|+..+|+|..+.++.+|++.+... ..||+||+|++||+++|+ +++++|
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 58999999995 69999999999999999999999999999763 249999999999999997 899999
Q ss_pred hc-cCCCcEEEEeccCC--HHHHHHHHhcCCCEEEeCCCC-HHHHHHHHHHHHHhhc
Q 006775 102 GL-EMDLPVIMMSADGR--VSAVMRGIRHGACDYLIKPIR-EEELKNIWQHVVRKRW 154 (632)
Q Consensus 102 r~-~~~iPIIvLSa~~d--~e~~~eAl~~GA~DYL~KP~~-~eeL~~~L~~vlrk~~ 154 (632)
|. ..++|||++|+..+ .....+.++ -+++|+.+--+ .+.+...+....+++.
T Consensus 80 R~~~~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 135 (755)
T PRK15029 80 HERQQNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_pred HhhCCCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHHHHHHHHHHHHHHH
Confidence 75 46899999999886 333333333 36788888744 4444455666555443
No 83
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.80 E-value=2.3e-08 Score=102.69 Aligned_cols=115 Identities=29% Similarity=0.449 Sum_probs=97.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-Cce-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~-gy~-V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPII 110 (632)
++|+++||++..++.++.++... ..+ +..+.++.++++.+... .+|++++|+.||+++|+++.+.|+. .+..+|+
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Iv 79 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGDPRPAIV 79 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc--CCCeEEEeeccCccchHHHHHHhcccCCCCeEE
Confidence 68999999999999999999842 222 33788999999998876 4999999999999999999999986 4567788
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
++|++.+. +..+++..|.||+.||+..+.|...+....+.
T Consensus 80 fvt~~~~~--a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 80 FVTAHDEY--AVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEehHHH--HHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 89987654 56777889999999999999999999876553
No 84
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=98.00 E-value=8.2e-06 Score=97.99 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=65.6
Q ss_pred ChhHHHHHHHcCC-------CCCCCcccccccCCCC----------CCCccEEEEEeCCHHHHHHHHHHHHhCCceEEEE
Q 006775 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQ----------FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTC 63 (632)
Q Consensus 1 LaI~~~lv~~mGG-------~g~Gs~~~~~~~~p~~----------~p~glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a 63 (632)
|+|++++|++||| .|.|++|++..|+... ...+.+||||||++.++..++.+|+.+|+.|..+
T Consensus 640 LaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~~~~~~~~~~~~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a 719 (894)
T PRK10618 640 FFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKMLAADPEVEEEEEKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITP 719 (894)
T ss_pred HHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEccCCcccccccccccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEc
Confidence 6899999999999 4788888877765211 1246899999999999999999999999999988
Q ss_pred CCHHHHHHHHHHcCCCceEEEEecCC
Q 006775 64 SQAAVALDILRERKGCFDVVLSDVHM 89 (632)
Q Consensus 64 ~sg~eALe~L~e~~~~pDLVILDi~M 89 (632)
.+.. . ...||+||+|+.+
T Consensus 720 ~~~~------~--~~~~Dlvl~D~~~ 737 (894)
T PRK10618 720 DERL------I--SQEYDIFLTDNPS 737 (894)
T ss_pred Cccc------c--CCCCCEEEECCCC
Confidence 7632 1 2359999999984
No 85
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=97.94 E-value=8.6e-05 Score=88.29 Aligned_cols=144 Identities=19% Similarity=0.194 Sum_probs=115.7
Q ss_pred ChhHHHHHHHcCC-------CCCCCcccccccCCCC-----------CCCccEEEEEeCCHHHHHHHHHHHHhCCceEEE
Q 006775 1 MAALQRIVQSSGG-------SGYGSSRAADVAVPDQ-----------FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTT 62 (632)
Q Consensus 1 LaI~~~lv~~mGG-------~g~Gs~~~~~~~~p~~-----------~p~glrVLIVDDd~~~r~~L~~lL~~~gy~V~~ 62 (632)
|+|++++++.||| .|.|++|++.+++... ...+.+|+|+||++..+..+..+|...++.+..
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~~~~~~~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~ 565 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPIIDGLPTDCLAGKRLLYVEPNSAAAQATLDILSETPLEVTY 565 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccccccCCccccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 6899999999999 3677777777665211 124679999999999999999999999999999
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH-hc--cCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCH
Q 006775 63 CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE 139 (632)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~L-r~--~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~ 139 (632)
+.+..+ +.. ..||++++|+.||+.++...+... +. ....++|+++...+......+.+.|+++|+.||+..
T Consensus 566 ~~~~~~----l~~--~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~ 639 (919)
T PRK11107 566 SPTLSQ----LPE--AHYDILLLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSH 639 (919)
T ss_pred cCCHHH----hcc--CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCH
Confidence 988887 222 359999999999988776655443 32 234567888888888888889999999999999999
Q ss_pred HHHHHHHHHHH
Q 006775 140 EELKNIWQHVV 150 (632)
Q Consensus 140 eeL~~~L~~vl 150 (632)
.+|...+....
T Consensus 640 ~~l~~~l~~~~ 650 (919)
T PRK11107 640 TRLLPALLEPC 650 (919)
T ss_pred HHHHHHHHHhh
Confidence 99988887654
No 86
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.80 E-value=2.2e-05 Score=86.84 Aligned_cols=94 Identities=35% Similarity=0.511 Sum_probs=82.2
Q ss_pred CceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCC
Q 006775 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 57 gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
-++|.++..+.+++..+.... ||.+++|+.||+++|+++++.++..+.. ++++|...+.....+.+++|+++++.||
T Consensus 12 ~~~v~~a~~g~~~l~~~~~~~--~~~~lld~~m~~~~~~~~~~~lk~~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~ 88 (435)
T COG3706 12 YKEVATAKKGLIALAILLDHK--PDYKLLDVMMPGMDGFELCRRLKAEPAT-VVMVTALDDSAPRVRGLKAGADDFLTKP 88 (435)
T ss_pred hhhhhhccchHHHHHHHhcCC--CCeEEeecccCCcCchhHHHHHhcCCcc-eEEEEecCCCCcchhHHhhhhhhhccCC
Confidence 356777999999999988655 9999999999999999999999876655 8899999998899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 006775 137 IREEELKNIWQHVVRKR 153 (632)
Q Consensus 137 ~~~eeL~~~L~~vlrk~ 153 (632)
+....+....+.+.+.+
T Consensus 89 ~~~~~~~~r~~~l~~~k 105 (435)
T COG3706 89 VNDSQLFLRAKSLVRLK 105 (435)
T ss_pred CChHHHHHhhhhhccch
Confidence 99999888887776543
No 87
>PRK12704 phosphodiesterase; Provisional
Probab=97.32 E-value=0.00042 Score=78.80 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=37.5
Q ss_pred cEEEEeccCCHH--HHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 108 PVIMMSADGRVS--AVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 108 PIIvLSa~~d~e--~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.+|++|+.+... .+..+++.++.|+..||+..+++...++.-+.
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVD 296 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 488899988766 88899999999999999999999887776554
No 88
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.27 E-value=0.0021 Score=58.47 Aligned_cols=106 Identities=14% Similarity=0.169 Sum_probs=74.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH-hccCCCcEEEEe
Q 006775 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMS 113 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~L-r~~~~iPIIvLS 113 (632)
||||||||..-+..|..+|+-.|+.+..+.+.+- ....... ..+.+++-..-.+ ...++++.+ +..+.+||+++.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~--~~~~~~v~~g~~~-~~~~~l~~l~~~~~~~Pvlllg 76 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSS--PWEACAVILGSCS-KLAELLKELLKWAPHIPVLLLG 76 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhc--CCcEEEEEecCch-hHHHHHHHHHhhCCCCCEEEEC
Confidence 6999999999999999999998998887776443 2323322 2444444332222 445667776 467899999998
Q ss_pred ccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHH
Q 006775 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
........ ..+.+-|..|++..+|..+++++
T Consensus 77 ~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 77 EHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 77655111 12666799999999999988764
No 89
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.20 E-value=0.0028 Score=44.56 Aligned_cols=55 Identities=38% Similarity=0.606 Sum_probs=47.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCC
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MP 90 (632)
++|+++++++..+..+...+...++.+..+.+..++...+... .+|++++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE--KPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCC
Confidence 4799999999999999999998899999999999999888654 499999998653
No 90
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=96.29 E-value=0.038 Score=50.58 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=77.2
Q ss_pred HHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCC--CCHHHHHHHHh-ccCCCcEEEEeccCCHHHHH
Q 006775 46 LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIG-LEMDLPVIMMSADGRVSAVM 122 (632)
Q Consensus 46 r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd--mDGleLl~~Lr-~~~~iPIIvLSa~~d~e~~~ 122 (632)
...|...|...+++|..+.+.++++..++... +++.|++|+. ++ ....++++.++ .+..+||.+++.....+.+-
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~-~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~ 83 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIESFT-DIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDLP 83 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHCTT-TEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCCC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHhCC-CeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccCC
Confidence 45677778878999999999999999998764 7999999997 21 23567888886 46899999999866444433
Q ss_pred HHHhcCCCEEEeCCC-CHHHHHHHHHHHHHh
Q 006775 123 RGIRHGACDYLIKPI-REEELKNIWQHVVRK 152 (632)
Q Consensus 123 eAl~~GA~DYL~KP~-~~eeL~~~L~~vlrk 152 (632)
..+-..+++|+.... +++.+...+.++.++
T Consensus 84 ~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~~ 114 (115)
T PF03709_consen 84 AEVLGEVDGFIWLFEDTAEFIARRIEAAARR 114 (115)
T ss_dssp HHHHCCESEEEETTTTTHHHHHHHHHHHHHH
T ss_pred HHHHhhccEEEEecCCCHHHHHHHHHHHHHh
Confidence 344456889998884 556666777776654
No 91
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.96 E-value=0.23 Score=45.74 Aligned_cols=111 Identities=12% Similarity=0.016 Sum_probs=77.7
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCceEEEE---CCHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhcc-
Q 006775 35 RVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLE- 104 (632)
Q Consensus 35 rVLIV----DDd~~~r~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVILDi~MPdm--DGleLl~~Lr~~- 104 (632)
||++. |.+..=...+..+|+..||+|... ...++.++.+.+.. +|+|.+...++.. .--++++.+++.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~--~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQED--VDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 34555 666777778888899999998753 35777888877765 9999998877532 234556666543
Q ss_pred CCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHH
Q 006775 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (632)
Q Consensus 105 ~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~ 147 (632)
+.-..|++.+....+...++.++|+++|+..--+.++....++
T Consensus 79 ~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 79 AGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 4334455665555566677889999999998888887766543
No 92
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.37 E-value=0.46 Score=45.01 Aligned_cols=115 Identities=15% Similarity=0.044 Sum_probs=82.7
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCceEEEE---CCHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhc
Q 006775 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (632)
Q Consensus 33 glrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVILDi~MPdm--DGleLl~~Lr~ 103 (632)
+.+||+. |.+..-...+..+|+..||+|+.. -..++.++.+.+.. +|+|.+...+... ...++++.++.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~--~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETD--ADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCccccCHHHHHHHHHHHHh
Confidence 4578887 788888888999999999999754 45777888877654 9999999888743 34566777754
Q ss_pred c-C-CCcEEEEeccC------CHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Q 006775 104 E-M-DLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 104 ~-~-~iPIIvLSa~~------d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
. . +++|+ +.+.. ..+...++.+.|++.+....-+.+++...+++.+
T Consensus 81 ~~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 81 AGLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred cCCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 3 3 55444 43332 2344567779999888887788888887777654
No 93
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=94.39 E-value=0.56 Score=42.50 Aligned_cols=94 Identities=11% Similarity=-0.019 Sum_probs=63.7
Q ss_pred eCCHHHHHHHHHHHHhCCceEEE---ECCHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhccCC-CcEEEEe
Q 006775 40 DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLEMD-LPVIMMS 113 (632)
Q Consensus 40 DDd~~~r~~L~~lL~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVILDi~MPdm--DGleLl~~Lr~~~~-iPIIvLS 113 (632)
|.+..=...+..+|+..||+|.. ....++.++.+.+.+ ||+|.+-..+... +..++++.+++... -..|++.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~--pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEED--ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 55666677888999999999864 335667777777654 9999998876542 35667777765432 2345555
Q ss_pred ccCCHHHHHHHHhcCCCEEEeC
Q 006775 114 ADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~K 135 (632)
+..-......+.+.|++.|+..
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred CCCCChhHHHHHHcCCeEEECC
Confidence 5554444456778999777663
No 94
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.85 E-value=1.7 Score=41.03 Aligned_cols=110 Identities=8% Similarity=-0.058 Sum_probs=74.6
Q ss_pred eCCHHHHHHHHHHHHhCCceEEE---ECCHHHHHHHHHHcCCCceEEEEecCCCC-CC-HHHHHHHHhcc-CCCcEEEEe
Q 006775 40 DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGLE-MDLPVIMMS 113 (632)
Q Consensus 40 DDd~~~r~~L~~lL~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVILDi~MPd-mD-GleLl~~Lr~~-~~iPIIvLS 113 (632)
|-|..-...+..+|+..||+|.. ..+.++.++...+.. +|+|.+...+.. +. --++++.|++. .....|++-
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~--adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 45566667788889999999874 456788888887754 999998776642 21 23455556542 322334445
Q ss_pred ccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
+....+...+..++|+++|+..--+..++...+.+.++
T Consensus 91 G~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 91 GVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred CCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 43444556677899999999987888888877776554
No 95
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=93.45 E-value=0.7 Score=54.81 Aligned_cols=117 Identities=12% Similarity=0.068 Sum_probs=77.3
Q ss_pred cEEEEEeCCH-HH-----HHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCC
Q 006775 34 LRVLVVDDDI-TC-----LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (632)
Q Consensus 34 lrVLIVDDd~-~~-----r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr-~~~~ 106 (632)
|+|+|||++- .. ...|...|+..||+|..+.+..+++..++.. ..++.|++|+.-. ..++++.++ .+..
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 76 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWDEY---SLDLCSDINQLNEY 76 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecccc---hHHHHHHHHHhCCC
Confidence 5788888873 21 4456677788899999999999999988854 4789999996332 355888886 4679
Q ss_pred CcEEEEeccCCHHHHHHHHhcCCCEEEeCCC-CHHHHHHHHHHHHHhhc
Q 006775 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKRW 154 (632)
Q Consensus 107 iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~-~~eeL~~~L~~vlrk~~ 154 (632)
+||+++........+-...-.-+++|+..-. +.+.+...|.++.+++.
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~y~ 125 (713)
T PRK15399 77 LPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEYL 125 (713)
T ss_pred CCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHHHH
Confidence 9999987654333222222223556666543 34555555666665543
No 96
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=92.71 E-value=0.89 Score=54.01 Aligned_cols=117 Identities=13% Similarity=0.159 Sum_probs=75.5
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCC
Q 006775 34 LRVLVVDDDI-T-----CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (632)
Q Consensus 34 lrVLIVDDd~-~-----~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr-~~~~ 106 (632)
|+||||+++. . -.+.|...|++.+|+|..+.+..+++..++.. ...+.|++|+.- ...++++.++ ....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 76 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDK---YNLELCEEISKMNEN 76 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecch---hhHHHHHHHHHhCCC
Confidence 5788887772 1 24556677888899999999999999988854 478999999532 2255888886 4679
Q ss_pred CcEEEEeccCCHHHHHHHHhcCCCEEEeCC-CCHHHHHHHHHHHHHhhc
Q 006775 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKP-IREEELKNIWQHVVRKRW 154 (632)
Q Consensus 107 iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP-~~~eeL~~~L~~vlrk~~ 154 (632)
+||+++........+-...-.-+++|+..- -+.+.+...+.+..+++.
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~~y~ 125 (714)
T PRK15400 77 LPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTDEYI 125 (714)
T ss_pred CCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHHHHH
Confidence 999998765433222111222345555543 234555555655555543
No 97
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=91.37 E-value=0.076 Score=57.41 Aligned_cols=76 Identities=9% Similarity=-0.051 Sum_probs=51.6
Q ss_pred cHHHHHHHhcCCCcCh---------HHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee-----ee
Q 006775 246 VPKRILELMNVPGLTR---------ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI-----QA 311 (632)
Q Consensus 246 ~pK~ILelM~v~gltr---------e~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i-----~i 311 (632)
+|.++.+++...++.. +.+-.|..+|+..++.| |++.|++. +.+..|+.||||||+.+ .+
T Consensus 170 vP~~V~~YI~~~~LY~e~~l~~~~~~~~~~HSl~VA~~A~~L---A~~~g~d~---~~a~~AGLLHDIGK~~~~~~~~~~ 243 (342)
T PRK07152 170 LDPKVNDYINENFLYLEDILKSFLDEYRYKHCLRVAQLAAEL---AKKNNLDP---KKAYYAGLYHDITKEWDEEKHRKF 243 (342)
T ss_pred CCHHHHHHHHHcCccccHHHHHHhhHHHHHHHHHHHHHHHHH---HHHhCcCH---HHHHHHHHHHHhhccCCHHHHHHH
Confidence 5555555554444443 34778999999999999 99999876 66777889999999864 23
Q ss_pred eccCCCCChHHHHHHHH
Q 006775 312 LAASGQIPPQTLAALHA 328 (632)
Q Consensus 312 L~KpGkL~~ee~~imq~ 328 (632)
+.+. .++.+++..+..
T Consensus 244 ~~~~-~~~~~~~~~~~~ 259 (342)
T PRK07152 244 LKKY-LKDVKNLPWYVL 259 (342)
T ss_pred HHhc-CCchhhcchHHH
Confidence 3332 345555554444
No 98
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=91.10 E-value=0.16 Score=49.35 Aligned_cols=45 Identities=16% Similarity=0.060 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCc--cccccccccccccCcCccee
Q 006775 262 ENVASHLQKFRLYLKRLNGVSQQGGITN--SFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 262 e~taSHLqRvr~ylk~L~~~A~~~Gls~--~~~e~i~~AspLHDiGKi~i 309 (632)
+.+-.|..||..++..| |..++.+. ...+.+..|+.||||||+.+
T Consensus 12 ~~~~~Hs~~Va~~A~~i---a~~~~~~~~~~d~~~l~~aaLLHDIGK~~~ 58 (164)
T TIGR00295 12 ESVRRHCLAVARVAMEL---AENIRKKGHEVDMDLVLKGALLHDIGRART 58 (164)
T ss_pred ccHHHHHHHHHHHHHHH---HHHhccccccCCHHHHHHHHHHhcCCcccC
Confidence 45889999999999999 88877432 45667888999999999854
No 99
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=90.70 E-value=0.69 Score=49.27 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=55.0
Q ss_pred ceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe-ccCCHHHHHHHHhcCCCEEEeCC
Q 006775 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS-ADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 58 y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLS-a~~d~e~~~eAl~~GA~DYL~KP 136 (632)
.++..+.+..++-.... .-.+|++|..+-. .++... ..+...++++. ...+.+....+++.|+.|||.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~----~~~~~~-~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P 72 (322)
T TIGR03815 2 VELDVAPDPEAARRAWA----RAPLVLVDADMAE----ACAAAG-LPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLP 72 (322)
T ss_pred CceEEccCchhhhhccc----cCCeEEECchhhh----HHHhcc-CCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeCC
Confidence 45566666665544332 3678999864411 112221 11223355544 45678889999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 006775 137 IREEELKNIWQHVV 150 (632)
Q Consensus 137 ~~~eeL~~~L~~vl 150 (632)
++..+|...+.++.
T Consensus 73 ~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 73 EAEGWLVELLADLD 86 (322)
T ss_pred CCHHHHHHHHHhhc
Confidence 99999999887763
No 100
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=90.08 E-value=0.17 Score=41.55 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee
Q 006775 263 NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 263 ~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (632)
.+..|..|+..++..+ |+..|++.. .+..|+.||||||+..
T Consensus 4 ~~~~H~~~v~~~a~~l---a~~~~~~~~---~l~~AalLHDiG~~~~ 44 (80)
T TIGR00277 4 NVLQHSLEVAKLAEAL---ARELGLDVE---LARRGALLHDIGKPIT 44 (80)
T ss_pred hHHHHHHHHHHHHHHH---HHHcCCCHH---HHHHHHHHHccCCccc
Confidence 4678999999999999 888887653 4778899999999854
No 101
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=89.90 E-value=3.6 Score=42.96 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=73.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH------hCCceEE--EECCHHHHHHHHHHcCCCceEEEEecCCC---------CCCHH
Q 006775 33 GLRVLVVDDDITCLRILEQMLR------RCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP---------DMDGF 95 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~------~~gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MP---------dmDGl 95 (632)
.+|+=|+.|+.....-+...++ +.||.|. +..+...|.++.. . .+++| || +..-.
T Consensus 93 ~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~-~--G~~~v-----mPlg~pIGsg~Gi~~~ 164 (248)
T cd04728 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLED-A--GCAAV-----MPLGSPIGSGQGLLNP 164 (248)
T ss_pred eEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-c--CCCEe-----CCCCcCCCCCCCCCCH
Confidence 3677777766543333222222 3488776 4455666655443 3 37777 65 11126
Q ss_pred HHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEe-----CCCCHHHHHHHHHHHHHh
Q 006775 96 KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (632)
Q Consensus 96 eLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~-----KP~~~eeL~~~L~~vlrk 152 (632)
++++.|++..++|||+=.+-...+.+.++++.|++..+. |.-++..+...+..++..
T Consensus 165 ~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 165 YNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 888888766789999988888999999999999999865 434566776666666653
No 102
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=89.80 E-value=7.9 Score=36.80 Aligned_cols=108 Identities=12% Similarity=0.025 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHhCCceEEE---ECCHHHHHHHHHHcCCCceEEEEecCCCCC-C-HHHHHHHHhcc-CCCcEEEEecc
Q 006775 42 DITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM-D-GFKLLEHIGLE-MDLPVIMMSAD 115 (632)
Q Consensus 42 d~~~r~~L~~lL~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVILDi~MPdm-D-GleLl~~Lr~~-~~iPIIvLSa~ 115 (632)
|..=...+..+|+..||+|.. .-+.++.++.+.+.. +|+|-+...|... . --++.+.+++. ..-++|++-+.
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~--adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~ 91 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETK--ADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGN 91 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCC
Confidence 344456788889999999874 567888888887764 9999998877532 2 33455666532 22234555552
Q ss_pred -----CCHH-HHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 116 -----GRVS-AVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 116 -----~d~e-~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.+.. ...++.++|++..+...-..+++...+++.++
T Consensus 92 ~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 92 LVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred cCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 1222 23456789998888877888998888877653
No 103
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=89.51 E-value=0.11 Score=45.66 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee
Q 006775 265 ASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 265 aSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (632)
..|..+|..+++.+ +...++ +...+.+..|+.||||||+..
T Consensus 2 ~~Hs~~V~~~a~~l---~~~~~~-~~~~~~l~~aaLlHDiGk~~~ 42 (122)
T PF01966_consen 2 FEHSLRVAELAERL---ADRLGL-EEDRELLRIAALLHDIGKIPT 42 (122)
T ss_dssp HHHHHHHHHHHHHH---HHHHTH-HHHHHHHHHHHHHTTTTHHST
T ss_pred hhHHHHHHHHHHHH---HHHcCC-chhHHHHHHHHHHHhcCCCCC
Confidence 47999999999999 777776 777888899999999999975
No 104
>PRK00208 thiG thiazole synthase; Reviewed
Probab=89.25 E-value=3.7 Score=42.85 Aligned_cols=112 Identities=21% Similarity=0.169 Sum_probs=73.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHH------HhCCceEE--EECCHHHHHHHHHHcCCCceEEEEecCCC---------CCCHH
Q 006775 33 GLRVLVVDDDITCLRILEQML------RRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP---------DMDGF 95 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL------~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MP---------dmDGl 95 (632)
.+|+=|+.|+.....-+...+ -+.||.|. +..+...|.++.. . .+|+| || +..-.
T Consensus 93 ~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~-~--G~~~v-----mPlg~pIGsg~gi~~~ 164 (250)
T PRK00208 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEE-A--GCAAV-----MPLGAPIGSGLGLLNP 164 (250)
T ss_pred eEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-c--CCCEe-----CCCCcCCCCCCCCCCH
Confidence 467777776653322222222 23488876 4455666655443 3 37877 66 11126
Q ss_pred HHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEe-----CCCCHHHHHHHHHHHHHh
Q 006775 96 KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (632)
Q Consensus 96 eLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~-----KP~~~eeL~~~L~~vlrk 152 (632)
++++.+++..++|||+=.+-...+.+.++++.|++..+. |.-++..+...+..++..
T Consensus 165 ~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 165 YNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred HHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 778888766789999988889999999999999999865 444567777777666653
No 105
>PRK15320 transcriptional activator SprB; Provisional
Probab=87.77 E-value=2.3 Score=43.11 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=96.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEE
Q 006775 35 RVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIM 111 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~~--gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr-~~~~iPIIv 111 (632)
+|+|-.|.-...-.+..++++. +..+.+|.+....+..++.. ||.+++=.--|..- +-+...++ ..++-||++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~~---p~a~lil~l~p~eh-~~lf~~l~~~l~~~~v~v 78 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSDM---PDAGLILALNPHEH-VYLFHALLTRLQNRKVLV 78 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhhC---CCceEEEeeCchhH-HHHHHHHHHHcCCCceEE
Confidence 5788888888888888888875 56778888888888888754 66555433334322 22333333 346778888
Q ss_pred EeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHH-------------HHHHhhcccc--cccc-ccC-Ccc-------
Q 006775 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ-------------HVVRKRWNEN--KEHE-NSG-SLE------- 167 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~-------------~vlrk~~~~~--~~~~-~~~-~le------- 167 (632)
++..--..+..-.--.|+-||+.| +||..+++ +...+-.... .... +.. ..+
T Consensus 79 v~d~l~~~dr~vl~~~g~~~~~l~----~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (251)
T PRK15320 79 VADRLYYIDRCVLQYFGVMDYVLK----DELSCAIRSEREKLRLPEAWLRFCHRPQKKTVAATYAFNAGETPEEVLFNIN 154 (251)
T ss_pred EecceeehhhhhhhhhcchhHHHH----HHHHHHhcccccccCCcHHHHHHhcCccccccceeeeccCCCChHHHhhhcc
Confidence 886543332222224688888776 34443332 2111100000 0000 000 000
Q ss_pred ----ccccCCCChhhHHHHHHhhcCCchhhhhhhhhcccccc
Q 006775 168 ----ETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEE 205 (632)
Q Consensus 168 ----~~~~~~ls~~Eie~l~~v~eG~~~~~~~~~~~is~k~~ 205 (632)
-.....++.+|++++..+.+|.+...++....++.+++
T Consensus 155 ~~~~~~~~~~LSdREIEVL~LLAkG~SNKEIAekL~LS~KTV 196 (251)
T PRK15320 155 QYAWWNLPPGVTQAKYALLILLSSGHPAIELAKKFGLGTKTV 196 (251)
T ss_pred ceeeecCCCCCCHHHHHHHHHHHcCCCHHHHHHHhccchhhH
Confidence 01124678999999999999999999988887776644
No 106
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=87.75 E-value=4.4 Score=44.19 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=50.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCC--ceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006775 35 RVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvL 112 (632)
+|++-++|+.+.+.++.+..++| |.+....+. ...+++.. =.++-+.|=+.+--+++..|+... -+++++
T Consensus 32 ~~~~~~~d~~~~~~~~~v~~~~gg~f~~~~~~~~---~~~~~~~~----g~vvhltmyg~~~~~~~~~i~~~~-~~~~~v 103 (339)
T PRK12703 32 SILVDERDETLENTIKKVVDNFGGSFEIKTGIEW---KSEFKKFH----GIRVHLTMYGRPIEDVIDEIRESG-KDVMVL 103 (339)
T ss_pred eeEecCCcHhHHHHHHHHHHhcCCCeEEEeccCH---HHHHHhcC----CEEEEEecCCCchHHHHHHHhccC-CCEEEE
Confidence 58999999999999999999986 455544444 44444432 267778888888888888887422 345544
Q ss_pred ec
Q 006775 113 SA 114 (632)
Q Consensus 113 Sa 114 (632)
.+
T Consensus 104 vg 105 (339)
T PRK12703 104 VG 105 (339)
T ss_pred EC
Confidence 44
No 107
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=87.66 E-value=6.6 Score=35.12 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHhCCceEEEE---CCHHHHHHHHHHcCCCceEEEEecCC-CCC-CHHHHHHHHhcc-CCCcEEEEecc
Q 006775 42 DITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHM-PDM-DGFKLLEHIGLE-MDLPVIMMSAD 115 (632)
Q Consensus 42 d~~~r~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVILDi~M-Pdm-DGleLl~~Lr~~-~~iPIIvLSa~ 115 (632)
++.-...+..+|++.|++|... .+.++..+.+.+.+ ||+|.+...+ +.. ...++++.++.. ++++|++ -+.
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~--pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~-GG~ 89 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAER--PDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVV-GGP 89 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTT--CSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEE-EES
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCC--CcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEE-ECC
Confidence 3566788999999999998765 33466677777654 9999999844 333 356677777643 4555554 444
Q ss_pred CCHHHHHHHHh--cCCCEEEeC
Q 006775 116 GRVSAVMRGIR--HGACDYLIK 135 (632)
Q Consensus 116 ~d~e~~~eAl~--~GA~DYL~K 135 (632)
.-.....+.++ .|+|..+.-
T Consensus 90 ~~t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 90 HATADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp SSGHHHHHHHHHHHTSEEEEEE
T ss_pred chhcChHHHhccCcCcceecCC
Confidence 33333445554 566655543
No 108
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.55 E-value=7.1 Score=34.40 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=55.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEE---CCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006775 35 RVLVVDDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIv 111 (632)
+||||...+.....++..+++.|+..... .........+...-...|+||+=.+.-..+....++......++|+++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 58999998888899999999999988877 222222222222223479998876666666667777665667889987
Q ss_pred Eec
Q 006775 112 MSA 114 (632)
Q Consensus 112 LSa 114 (632)
.-.
T Consensus 81 ~~~ 83 (97)
T PF10087_consen 81 SRS 83 (97)
T ss_pred ECC
Confidence 643
No 109
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=83.59 E-value=17 Score=35.78 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=49.5
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCCC--------CHHHHHHHHhccCC-CcEEEEeccCCHHHHHHHHhcCCCEE
Q 006775 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDM--------DGFKLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi~MPdm--------DGleLl~~Lr~~~~-iPIIvLSa~~d~e~~~eAl~~GA~DY 132 (632)
.+.+..++.+.... .+|.|.++-..|.. .|++.+++++.... +||++..+- +.+.+.+++++||+.+
T Consensus 110 ~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv 185 (212)
T PRK00043 110 STHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGV 185 (212)
T ss_pred eCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 45566677666542 48999987555532 35888888865444 898887665 5677889999999998
Q ss_pred Ee
Q 006775 133 LI 134 (632)
Q Consensus 133 L~ 134 (632)
..
T Consensus 186 ~~ 187 (212)
T PRK00043 186 AV 187 (212)
T ss_pred EE
Confidence 64
No 110
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=82.63 E-value=24 Score=35.52 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=56.2
Q ss_pred HHHHHHh-CCceE-EEECCHHHHHHHHHHcCCCceEEEEecC-------CCCCCHHHHHHHHhccCCCcEEEEeccCCHH
Q 006775 49 LEQMLRR-CLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-------MPDMDGFKLLEHIGLEMDLPVIMMSADGRVS 119 (632)
Q Consensus 49 L~~lL~~-~gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~-------MPdmDGleLl~~Lr~~~~iPIIvLSa~~d~e 119 (632)
+...+++ .+..+ ..+.+.+++..... . .+|++.+... ......++++++++...++||+...+-.+.+
T Consensus 110 ~i~~~~~~~~i~vi~~v~t~ee~~~a~~-~--G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~ 186 (221)
T PRK01130 110 LVKRIKEYPGQLLMADCSTLEEGLAAQK-L--GFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPE 186 (221)
T ss_pred HHHHHHhCCCCeEEEeCCCHHHHHHHHH-c--CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHH
Confidence 3333444 44444 45667777765443 2 3888765321 1122357888888766689999988888889
Q ss_pred HHHHHHhcCCCEEEeC
Q 006775 120 AVMRGIRHGACDYLIK 135 (632)
Q Consensus 120 ~~~eAl~~GA~DYL~K 135 (632)
.+.++++.||+.++.=
T Consensus 187 ~~~~~l~~GadgV~iG 202 (221)
T PRK01130 187 QAKKALELGAHAVVVG 202 (221)
T ss_pred HHHHHHHCCCCEEEEc
Confidence 9999999999988654
No 111
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=82.32 E-value=19 Score=35.92 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=66.9
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCceEEEE---CCHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhc
Q 006775 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (632)
Q Consensus 33 glrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVILDi~MPdm--DGleLl~~Lr~ 103 (632)
+.||++. |.+..=...+..+|+..||+|+.. ...++.++.+.+.. ||+|-+...|... ...++++.++.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHK--PDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHH
Confidence 4578887 777777888999999999998743 35677788887765 9999999877643 34556677764
Q ss_pred cC---CCcEEEEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 104 EM---DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 104 ~~---~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
.. +++|++=-..-..+ -+-..||+.|-.-
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~d 191 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAED 191 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEECC
Confidence 43 45555433333332 3446799887653
No 112
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=82.21 E-value=6.4 Score=36.95 Aligned_cols=107 Identities=20% Similarity=0.253 Sum_probs=71.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHH-----HHHHHhccCC
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK-----LLEHIGLEMD 106 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGle-----Ll~~Lr~~~~ 106 (632)
.+-+.+.||.+.........+|...+.+|+.-.+..+ +-.. .+|.+++.+-.+-..-+. +.+.+.. .+
T Consensus 10 ~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~----lp~~--hYD~~Ll~vavtfr~n~tm~~~~l~~Al~m-td 82 (140)
T COG4999 10 AGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSA----LPPA--HYDMMLLGVAVTFRENLTMQHERLAKALSM-TD 82 (140)
T ss_pred ccceeEEecCccHHHHHHHHHHhcCCceEEecccccc----cChh--hhceeeecccccccCCchHHHHHHHHHHhh-hc
Confidence 4678999999999999999999999998876443332 2122 399999998776444333 3333321 12
Q ss_pred CcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHH
Q 006775 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (632)
Q Consensus 107 iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L 146 (632)
- +|+--.......+.+....|+.++|.||++...|.-.+
T Consensus 83 ~-vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 83 F-VILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred c-eEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 1 22222223344556677899999999999998887633
No 113
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=81.78 E-value=0.99 Score=51.78 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=47.3
Q ss_pred HHHHHHhccccccHHHHHHHhcCCCcChH---HHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcc
Q 006775 234 VSAVNQLGIDKAVPKRILELMNVPGLTRE---NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 234 l~av~~Lgidka~pK~ILelM~v~gltre---~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
-+++..||+..-.| .++.+++...++.+ ++-.|..+|+.++..| |..+|++... +..|+.||||||+
T Consensus 298 ~~~~~~~~~~~~~~-~~~~~l~~l~~r~~~~~~~l~Hs~~VA~lA~~L---A~~lgld~~~---a~~AGLLHDIGK~ 367 (514)
T TIGR03319 298 EQAAFDLGVHGLHP-ELIKLLGRLKFRTSYGQNVLQHSIEVAHLAGIM---AAELGEDVKL---AKRAGLLHDIGKA 367 (514)
T ss_pred HHHHHHhCCCcCCH-HHHHHHHHhhccccCCccHHHHHHHHHHHHHHH---HHHhCcCHHH---HHHHHHHHhcCcc
Confidence 34566666665433 34444544444433 3678999999999999 9999997754 4568899999997
No 114
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=81.60 E-value=45 Score=32.22 Aligned_cols=116 Identities=14% Similarity=-0.017 Sum_probs=73.3
Q ss_pred ccEEEE----EeCCHHHHHHHHHHHHhCCceEE---EECCHHHHHHHHHHcCCCceEEEEecCCCC--CCHHHHHHHHhc
Q 006775 33 GLRVLV----VDDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGL 103 (632)
Q Consensus 33 glrVLI----VDDd~~~r~~L~~lL~~~gy~V~---~a~sg~eALe~L~e~~~~pDLVILDi~MPd--mDGleLl~~Lr~ 103 (632)
..|||| .|-+..-...+.+.|+..||+|. ...+.+|+.+..-+. +.|+|.+...-.. ...-++++.+++
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~--dv~vIgvSsl~g~h~~l~~~lve~lre 89 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE--DVDVIGVSSLDGGHLTLVPGLVEALRE 89 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc--CCCEEEEEeccchHHHHHHHHHHHHHH
Confidence 445655 47777778899999999999987 467888988877554 4888887653221 112334444554
Q ss_pred cCCCcEE-EEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Q 006775 104 EMDLPVI-MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 104 ~~~iPII-vLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
.---.|+ +.-+.-..+...+..++|++.++.--....+...-+.+.+
T Consensus 90 ~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 90 AGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred hCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 3222344 3444444444556668999998876566666655554443
No 115
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=81.51 E-value=39 Score=31.98 Aligned_cols=103 Identities=16% Similarity=0.038 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhCCceEE---EECCHHHHHHHHHHcCCCceEEEEecCCCC-CC-HHHHHHHHhcc--CCCcEEEEec
Q 006775 42 DITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGLE--MDLPVIMMSA 114 (632)
Q Consensus 42 d~~~r~~L~~lL~~~gy~V~---~a~sg~eALe~L~e~~~~pDLVILDi~MPd-mD-GleLl~~Lr~~--~~iPIIvLSa 114 (632)
+..-...+..+|+..||+|+ ..-+.++.++...++. +|+|.+...|.. +. .-++++.+++. .+++|+ +-+
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~--adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vi-vGG 88 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD--ADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLY-VGG 88 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEE-EEC
Confidence 34455678888999999987 4557788888877764 999999887764 32 34566666543 254444 433
Q ss_pred cC-----C-HHHHHHHHhcCCCEEEeCCCCHHHHHHHHH
Q 006775 115 DG-----R-VSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (632)
Q Consensus 115 ~~-----d-~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~ 147 (632)
.. + .+...++.++|++..+...-+++++...++
T Consensus 89 ~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 31 2 223455678999988887777887776554
No 116
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=80.45 E-value=1.2 Score=45.52 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcce
Q 006775 260 TRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFD 308 (632)
Q Consensus 260 tre~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~ 308 (632)
.-+++-+|+.||...+..| |.+.|.+. +.+..|+.||||||..
T Consensus 33 ~~~~~l~H~~~Va~lA~~I---a~~~g~D~---~l~~~aaLLHDIg~~~ 75 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRI---AEEEGVDP---DLALRAALLHDIGKAI 75 (222)
T ss_pred ccchHHHHHHHHHHHHHHH---HHHcCCCH---HHHHHHHHHHhhcccc
Confidence 3457999999999999999 88888754 5667788999999985
No 117
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=79.41 E-value=33 Score=36.23 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=74.6
Q ss_pred ccEEEEEeCC-------HHHHHHHHHHHHhCCceEEEEC--CHHHHHHHHHHcCCCceEEEEecCCCCCC--H---HHHH
Q 006775 33 GLRVLVVDDD-------ITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMD--G---FKLL 98 (632)
Q Consensus 33 glrVLIVDDd-------~~~r~~L~~lL~~~gy~V~~a~--sg~eALe~L~e~~~~pDLVILDi~MPdmD--G---leLl 98 (632)
.+|+=|+-|+ ....+..+. |-+.||.|..+. |..-|.++ .+.. . .+++=+--|-.+ | ...+
T Consensus 107 wIKLEVi~D~~~LlPD~~etl~Aae~-Lv~eGF~VlPY~~~D~v~a~rL-ed~G--c-~aVMPlgsPIGSg~Gl~n~~~l 181 (267)
T CHL00162 107 FVKLEVISDPKYLLPDPIGTLKAAEF-LVKKGFTVLPYINADPMLAKHL-EDIG--C-ATVMPLGSPIGSGQGLQNLLNL 181 (267)
T ss_pred eEEEEEeCCCcccCCChHHHHHHHHH-HHHCCCEEeecCCCCHHHHHHH-HHcC--C-eEEeeccCcccCCCCCCCHHHH
Confidence 3566566433 233334333 445699987544 34444443 3322 2 234444444333 3 3567
Q ss_pred HHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEE-----eCCCCHHHHHHHHHHHHHh
Q 006775 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL-----IKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 99 ~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL-----~KP~~~eeL~~~L~~vlrk 152 (632)
+.|+.++++|||+=.+-...+.+..+++.|+++.+ .|--++.++...++.+++.
T Consensus 182 ~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 182 QIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred HHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 77777888999999999999999999999999874 4667888898888888763
No 118
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=77.88 E-value=26 Score=42.11 Aligned_cols=116 Identities=10% Similarity=-0.034 Sum_probs=74.7
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCceEEE---ECCHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhcc
Q 006775 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLE 104 (632)
Q Consensus 34 lrVLIV----DDd~~~r~~L~~lL~~~gy~V~~---a~sg~eALe~L~e~~~~pDLVILDi~MPdm--DGleLl~~Lr~~ 104 (632)
.+|++. |.+..-...+..+|+..||+|.. ..+.+++.+...+.. +|+|++...+... ..-++++.|+..
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~--a~ivvlcs~d~~~~e~~~~l~~~Lk~~ 660 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEND--VHVVGVSSLAAGHKTLVPALIEALKKL 660 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcC--CCEEEEeccchhhHHHHHHHHHHHHhc
Confidence 356543 33445556677888888999863 346778888887654 8988887655432 244667777644
Q ss_pred CCCcE-EEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 105 MDLPV-IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 105 ~~iPI-IvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
..-.| |++.+..-.+......++|+++|+..-.+..++...+.+.++
T Consensus 661 G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 661 GREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred CCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 21123 445544233334556689999999988888888777776664
No 119
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=77.62 E-value=32 Score=34.99 Aligned_cols=103 Identities=13% Similarity=0.163 Sum_probs=68.1
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCceEEEEC---CHHHHHHHHHHcCCCceEEEEecCCCC-C-CHHHHHHHHh
Q 006775 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIG 102 (632)
Q Consensus 32 ~glrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a~---sg~eALe~L~e~~~~pDLVILDi~MPd-m-DGleLl~~Lr 102 (632)
..-+|++. |.|..=...+..+|+..||+|+... ..++.++.+.+.+ ||+|.+...|+. + .-.++++.|+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~--~~~V~lS~~~~~~~~~~~~~i~~L~ 164 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHK--ADIIGLSGLLVPSLDEMVEVAEEMN 164 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEccchhccHHHHHHHHHHHH
Confidence 34578887 7777778889999999999997544 4777788887765 999999988874 2 2345677776
Q ss_pred cc-CCCcEEEEeccCCHHHHHH---HHhcCCCEEEeCC
Q 006775 103 LE-MDLPVIMMSADGRVSAVMR---GIRHGACDYLIKP 136 (632)
Q Consensus 103 ~~-~~iPIIvLSa~~d~e~~~e---Al~~GA~DYL~KP 136 (632)
.. .+++|++=-.--+.+...+ +-..|||.|-.-.
T Consensus 165 ~~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 165 RRGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred hcCCCCeEEEEChhcCHHHHhhhhccccCCCceEecCH
Confidence 43 3555554433333333322 1246898776543
No 120
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=76.59 E-value=28 Score=36.41 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=67.5
Q ss_pred HHHHHHHhCCceE--EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEeccCCHHHHHH
Q 006775 48 ILEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMR 123 (632)
Q Consensus 48 ~L~~lL~~~gy~V--~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr--~~~~iPIIvLSa~~d~e~~~e 123 (632)
.++..|..-...+ ........+.+++... .||.|++|..=...|--++...++ ....++.++.....+...+.+
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r 86 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLA--GFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhc--CCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 4666666533222 2223334555666554 499999999776677666666664 234567777888889999999
Q ss_pred HHhcCCCEEEeCC-CCHHHHHHHHHHH
Q 006775 124 GIRHGACDYLIKP-IREEELKNIWQHV 149 (632)
Q Consensus 124 Al~~GA~DYL~KP-~~~eeL~~~L~~v 149 (632)
+++.|+.+++.-- -+.++.+.+++.+
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 9999999987744 4677777666654
No 121
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=76.45 E-value=34 Score=34.42 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=52.0
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEecC-C------CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEE
Q 006775 60 VTTCSQAAVALDILRERKGCFDVVLSDVH-M------PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 60 V~~a~sg~eALe~L~e~~~~pDLVILDi~-M------PdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DY 132 (632)
+..+.+.+++...... .+|.+.+... . .....+++++.++...++||+...+-.+.+.+.++++.||+.+
T Consensus 127 iv~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV 203 (219)
T cd04729 127 MADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAV 203 (219)
T ss_pred EEECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEE
Confidence 3456777887665542 3888765321 1 1223578888887656899999888888899999999999988
Q ss_pred EeC
Q 006775 133 LIK 135 (632)
Q Consensus 133 L~K 135 (632)
+.-
T Consensus 204 ~vG 206 (219)
T cd04729 204 VVG 206 (219)
T ss_pred EEc
Confidence 764
No 122
>PRK00106 hypothetical protein; Provisional
Probab=75.70 E-value=2.4 Score=48.93 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=47.1
Q ss_pred HHHHHhccccccHHHHHHHhcCCCcChH---HHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcc
Q 006775 235 SAVNQLGIDKAVPKRILELMNVPGLTRE---NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 235 ~av~~Lgidka~pK~ILelM~v~gltre---~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
+++..+|+..-.| +++.+++-..++.+ ++-.|...|+..+..| |..+|++ .+.+..|..||||||+
T Consensus 320 ~a~~~lg~~~~~~-e~~~~lg~l~~r~sy~qnl~~HSv~VA~lA~~l---A~~lgld---~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 320 AAAYEIGAPNLHP-DLIKIMGRLQFRTSYGQNVLRHSVEVGKLAGIL---AGELGEN---VALARRAGFLHDMGKA 388 (535)
T ss_pred HHHHHcCCCCCCH-HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHH---HHHhCCC---HHHHHHHHHHHhccCc
Confidence 4455555554444 34444555444443 4899999999999999 9999975 4667778899999999
No 123
>PRK12705 hypothetical protein; Provisional
Probab=75.40 E-value=2.6 Score=48.29 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=44.0
Q ss_pred HHHHhccccccHHHHHHHhcCCCcChH---HHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcc
Q 006775 236 AVNQLGIDKAVPKRILELMNVPGLTRE---NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 236 av~~Lgidka~pK~ILelM~v~gltre---~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
++..+|+..-.| .++..|+....+.+ ++-.|..++..++..| |..+|++.+. +..|+.||||||.
T Consensus 294 a~~~lgi~~~~~-~li~~Lg~L~~R~sygqnvl~HSl~VA~lA~~L---A~~lGld~d~---a~~AGLLHDIGK~ 361 (508)
T PRK12705 294 VLEELGIFDLKP-GLVRLLGRLYFRTSYGQNVLSHSLEVAHLAGII---AAEIGLDPAL---AKRAGLLHDIGKS 361 (508)
T ss_pred HHHHhccccccH-HHHHHHHHHhhcccCCchHHHHHHHHHHHHHHH---HHHcCcCHHH---HHHHHHHHHcCCc
Confidence 444456554333 23333433332222 4778999999999999 9999998754 4568899999996
No 124
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=75.25 E-value=36 Score=35.53 Aligned_cols=99 Identities=14% Similarity=0.064 Sum_probs=66.1
Q ss_pred HHHHHHhCCce--EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEeccCCHHHHHHH
Q 006775 49 LEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (632)
Q Consensus 49 L~~lL~~~gy~--V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr--~~~~iPIIvLSa~~d~e~~~eA 124 (632)
+++.|..-... +........+.+++... .||.|++|..=...|--++...++ ....++.++.....+...+.++
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~ 80 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLA--GFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRL 80 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhc--CCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHH
Confidence 44555543222 22233334556666554 499999999777677666666665 2345677778888899999999
Q ss_pred HhcCCCEEEeCC-CCHHHHHHHHHHH
Q 006775 125 IRHGACDYLIKP-IREEELKNIWQHV 149 (632)
Q Consensus 125 l~~GA~DYL~KP-~~~eeL~~~L~~v 149 (632)
++.|+.+.+.-= -+.++.+.+++.+
T Consensus 81 LD~Ga~gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 81 LDIGFYNFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred hcCCCCEEEecCcCCHHHHHHHHHHc
Confidence 999999987744 4677777666543
No 125
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=74.57 E-value=2.4 Score=43.62 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc----CCCccccccccccccccCcCcceeeeeccCCCCChHHHHHHHH
Q 006775 263 NVASHLQKFRLYLKRLNGVSQQG----GITNSFCAPIETNVKLGSLGRFDIQALAASGQIPPQTLAALHA 328 (632)
Q Consensus 263 ~taSHLqRvr~ylk~L~~~A~~~----Gls~~~~e~i~~AspLHDiGKi~i~iL~KpGkL~~ee~~imq~ 328 (632)
..-.|+.||..++..+ +++- +.+. +.+..|+.|||||+... ..++++++.+++.....
T Consensus 55 ~~~~Hs~RV~~~a~~i---a~~e~~~~~~D~---evl~lAALLHDIG~~~~--~~~~~~~~fe~~ga~~A 116 (228)
T TIGR03401 55 ETYNHSLRVYYYGLAI---ARDQFPEWDLSD---ETWFLTCLLHDIGTTDE--NMTATKMSFEFYGGILA 116 (228)
T ss_pred hhhHHHHHHHHHHHHH---HHHhccccCCCH---HHHHHHHHHHhhccccc--cCCcccCCHHHHHHHHH
Confidence 5779999999999999 6532 4444 56888999999998754 23667888888855444
No 126
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=74.00 E-value=39 Score=35.14 Aligned_cols=99 Identities=16% Similarity=0.091 Sum_probs=66.4
Q ss_pred HHHHHHhCC--ceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEEEeccCCHHHHHHH
Q 006775 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRG 124 (632)
Q Consensus 49 L~~lL~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~--~~~iPIIvLSa~~d~e~~~eA 124 (632)
++..|+.-. +-+..........+.+... .+|.|++|+.=...+.-++...++. .....+++.....+...+.++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~--g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~ 80 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGA--GFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQL 80 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhc--CCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHH
Confidence 445555432 2233333444556666554 4999999997666677677766653 334577777777788889999
Q ss_pred HhcCCCEEEe-CCCCHHHHHHHHHHH
Q 006775 125 IRHGACDYLI-KPIREEELKNIWQHV 149 (632)
Q Consensus 125 l~~GA~DYL~-KP~~~eeL~~~L~~v 149 (632)
++.|+++.+. |--+.++++++++.+
T Consensus 81 Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 81 LDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred hCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 9999998865 446788887777654
No 127
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=73.72 E-value=55 Score=28.93 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=28.9
Q ss_pred CHHHHHHHHhcCCCEEEeCCC--CHHHHHHHHHHHHHh
Q 006775 117 RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVRK 152 (632)
Q Consensus 117 d~e~~~eAl~~GA~DYL~KP~--~~eeL~~~L~~vlrk 152 (632)
..+.+..+++.|..=|+-||+ +.+++.+.++.+-+.
T Consensus 75 h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 75 HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 456778899999999999996 888888877766543
No 128
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.34 E-value=18 Score=40.83 Aligned_cols=120 Identities=10% Similarity=0.111 Sum_probs=62.1
Q ss_pred CCCCCcccccccCCC-CCCCccEEEEEeCCHHH---HHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecC-
Q 006775 14 SGYGSSRAADVAVPD-QFPAGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH- 88 (632)
Q Consensus 14 ~g~Gs~~~~~~~~p~-~~p~glrVLIVDDd~~~---r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~- 88 (632)
.|.|.+++..--... ....+.+|++++-|..- .+.++...+..+..+..+.+..++.+.++.. .+|+||+|.-
T Consensus 232 tGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~--~~D~VLIDTaG 309 (432)
T PRK12724 232 TGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARD--GSELILIDTAG 309 (432)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhC--CCCEEEEeCCC
Confidence 455555544321111 12346789999988622 2233444344466666666666777777643 5999999961
Q ss_pred -CC-CCCHHHHHHHH-hc----cCCCcEEEEeccCCHHHHHHHHh----cCCCEEE-eC
Q 006775 89 -MP-DMDGFKLLEHI-GL----EMDLPVIMMSADGRVSAVMRGIR----HGACDYL-IK 135 (632)
Q Consensus 89 -MP-dmDGleLl~~L-r~----~~~iPIIvLSa~~d~e~~~eAl~----~GA~DYL-~K 135 (632)
++ +.+-++-+..+ +. .+.-.++++++....+...++++ .|.+..| +|
T Consensus 310 r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTK 368 (432)
T PRK12724 310 YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTK 368 (432)
T ss_pred CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEc
Confidence 21 11222222222 21 12235677777766655544442 4555553 44
No 129
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=73.24 E-value=39 Score=35.69 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=66.1
Q ss_pred HHHHHHHhCCceE--EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEeccCCHHHHHH
Q 006775 48 ILEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMR 123 (632)
Q Consensus 48 ~L~~lL~~~gy~V--~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr--~~~~iPIIvLSa~~d~e~~~e 123 (632)
.+++.|..-...+ ........+.+++... .||.|++|..=...|--++...++ ....+..++.....+...+.+
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~--GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHc--CCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHH
Confidence 3566666533222 2223334555666554 499999999776666666665554 234566677777888899999
Q ss_pred HHhcCCCEEEeCCC-CHHHHHHHHHHH
Q 006775 124 GIRHGACDYLIKPI-REEELKNIWQHV 149 (632)
Q Consensus 124 Al~~GA~DYL~KP~-~~eeL~~~L~~v 149 (632)
+++.||.+.+.--+ +.++.+.+++.+
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 99999999988554 567776666654
No 130
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=70.84 E-value=17 Score=38.62 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=59.3
Q ss_pred EEEEEeCCHHHHH---HHHHHHHh----C--CceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 006775 35 RVLVVDDDITCLR---ILEQMLRR----C--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (632)
Q Consensus 35 rVLIVDDd~~~r~---~L~~lL~~----~--gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~ 105 (632)
.|||-|.|-.... .++..++. . ....+.+.+.++|.+.+.. .+|+|++| +|+..+-.+.++.++...
T Consensus 158 ~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lD-n~~~e~l~~~v~~l~~~~ 233 (277)
T TIGR01334 158 TLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLD-KFTPQQLHHLHERLKFFD 233 (277)
T ss_pred hheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEEC-CCCHHHHHHHHHHHhccC
Confidence 3677777654432 33333332 1 2234678899999998863 48999999 454444444555554322
Q ss_pred CCcEEEEeccCCHHHHHHHHhcCCCEE
Q 006775 106 DLPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 106 ~iPIIvLSa~~d~e~~~eAl~~GA~DY 132 (632)
.-.+|-.++.-+.+.+.+....|++-+
T Consensus 234 ~~~~leasGGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 234 HIPTLAAAGGINPENIADYIEAGIDLF 260 (277)
T ss_pred CCEEEEEECCCCHHHHHHHHhcCCCEE
Confidence 233566788888888888888998754
No 131
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=70.82 E-value=17 Score=40.89 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=36.6
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCceEEEECCHHHHHHHHHHcC--CCceEEEEec
Q 006775 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERK--GCFDVVLSDV 87 (632)
Q Consensus 32 ~glrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~--~~pDLVILDi 87 (632)
.+.+|++++-|+. ..+.++...+..+..+..+.+..+..+.+.... ..+|+||+|.
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 4578999998864 334444444455777777777766555554322 1489999996
No 132
>PRK14974 cell division protein FtsY; Provisional
Probab=70.79 E-value=19 Score=39.23 Aligned_cols=100 Identities=22% Similarity=0.222 Sum_probs=51.7
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCceEEEECCH-------HHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH
Q 006775 32 AGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCSQA-------AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 32 ~glrVLIVDDd~---~~r~~L~~lL~~~gy~V~~a~sg-------~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~L 101 (632)
.+.+|++++-|. ...+.++......+..+.....+ .++++.++.. .+|+||+|..=-...-.+++..|
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~--~~DvVLIDTaGr~~~~~~lm~eL 244 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKAR--GIDVVLIDTAGRMHTDANLMDEL 244 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhC--CCCEEEEECCCccCCcHHHHHHH
Confidence 457899998873 33445555555566655433321 2444444433 48999999741111123344443
Q ss_pred h-----ccCCCcEEEEeccCCHHHHH--HHH--hcCCCEEE
Q 006775 102 G-----LEMDLPVIMMSADGRVSAVM--RGI--RHGACDYL 133 (632)
Q Consensus 102 r-----~~~~iPIIvLSa~~d~e~~~--eAl--~~GA~DYL 133 (632)
+ ..++..++++.+....+... +.+ ..+++.++
T Consensus 245 ~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giI 285 (336)
T PRK14974 245 KKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVI 285 (336)
T ss_pred HHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEE
Confidence 2 23555566666544433332 222 24666654
No 133
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=70.64 E-value=43 Score=33.43 Aligned_cols=78 Identities=8% Similarity=0.137 Sum_probs=58.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--ceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIv 111 (632)
-+++|+.+++..++.++.+++.+| |.|....+.+++++.++.....|.|+..+....+ .++-++..-.. .-|+++
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~~~-~~p~LI 108 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAHRK-GEPLLI 108 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhhcc-CCcEEE
Confidence 378999999999999999999885 7789999999999988743335788888888765 44444332123 556666
Q ss_pred Eec
Q 006775 112 MSA 114 (632)
Q Consensus 112 LSa 114 (632)
+-+
T Consensus 109 vvG 111 (176)
T PRK03958 109 VVG 111 (176)
T ss_pred EEc
Confidence 655
No 134
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.92 E-value=40 Score=35.93 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=60.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC------CceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc--CC
Q 006775 35 RVLVVDDDITCLRILEQMLRRC------LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MD 106 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~~------gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~--~~ 106 (632)
.|||-|+|.... .+...+... ....+.+.+.+++.+.+.. .+|+|++|=..|+ +--++++.++.. ..
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a---gaDiI~LDn~~~e-~l~~~v~~l~~~~~~~ 230 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA---GADIIMLDNMTPE-EIREVIEALKREGLRE 230 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CcCEEEECCCCHH-HHHHHHHHHHhcCcCC
Confidence 389999986655 566655432 1234578999999999864 3899999954332 223334444322 12
Q ss_pred CcEEEEeccCCHHHHHHHHhcCCCEEE
Q 006775 107 LPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 107 iPIIvLSa~~d~e~~~eAl~~GA~DYL 133 (632)
-..|..|+.-+.+.+.+..+.|+|.+-
T Consensus 231 ~~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 231 RVKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred CEEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 235667777788888888899988553
No 135
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=69.16 E-value=54 Score=33.46 Aligned_cols=90 Identities=16% Similarity=0.225 Sum_probs=56.8
Q ss_pred HHHHhCC-ceEEEECCHHHHHHHHHHcC-CCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHhc
Q 006775 51 QMLRRCL-YNVTTCSQAAVALDILRERK-GCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRH 127 (632)
Q Consensus 51 ~lL~~~g-y~V~~a~sg~eALe~L~e~~-~~pDLVILDi~MPdmDGleLl~~Lr~~-~~iPIIvLSa~~d~e~~~eAl~~ 127 (632)
..|...+ .-|....+.++|++.++... ..++ ++.+.+-..++++.++.++.. ++ -+|-.-.--+.+.+..++++
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~~p~-~~IGAGTVl~~~~a~~a~~a 86 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKEVPE-ALIGAGTVLNPEQLAQAIEA 86 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHHCCC-CEEEEeeccCHHHHHHHHHc
Confidence 3444443 45677888888888776532 1255 444445556799999999743 43 23333334456788899999
Q ss_pred CCCEEEeCC-CCHHHHHHH
Q 006775 128 GACDYLIKP-IREEELKNI 145 (632)
Q Consensus 128 GA~DYL~KP-~~~eeL~~~ 145 (632)
||+ |+.-| ++. ++.+.
T Consensus 87 GA~-FivsP~~~~-~vi~~ 103 (212)
T PRK05718 87 GAQ-FIVSPGLTP-PLLKA 103 (212)
T ss_pred CCC-EEECCCCCH-HHHHH
Confidence 997 66667 555 55443
No 136
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=69.11 E-value=23 Score=37.81 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=46.5
Q ss_pred CHHHHHHHHhccCCCcEE--EEeccCCHHHHHHHHhcCCCEEEe-----CCCCHHHHHHHHHHHHHhh
Q 006775 93 DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 93 DGleLl~~Lr~~~~iPII--vLSa~~d~e~~~eAl~~GA~DYL~-----KP~~~eeL~~~L~~vlrk~ 153 (632)
.+++++++++....+||| ...+-...+.+..++++||+.++. |.-++.+....+..++..+
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~ 251 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHY 251 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence 478999998766679998 566666889999999999999854 4446777766666666554
No 137
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=68.46 E-value=1.9 Score=41.11 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHh----hhhhhcCCCccccccccccccccCcCccee
Q 006775 266 SHLQKFRLYLKRLN----GVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 266 SHLqRvr~ylk~L~----~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (632)
.|+.++..+.+.|- ..+...|. ++.+.+..++.||||||+..
T Consensus 3 ~H~~~v~~~a~~l~~~~~~~~~~~~~--~~~~~~~~~~~lHDiGK~~~ 48 (177)
T TIGR01596 3 EHLLDVAAVAEKLKNLDIVIADLIGK--LLRELLDLLALLHDIGKINP 48 (177)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHhh--HHHHHHHHHHHHccCccCCH
Confidence 57777777666531 11444443 45677888899999999975
No 138
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=67.76 E-value=22 Score=39.98 Aligned_cols=92 Identities=14% Similarity=0.059 Sum_probs=52.3
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCC-CCCC--HHHHHHHH-h-c
Q 006775 32 AGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM-PDMD--GFKLLEHI-G-L 103 (632)
Q Consensus 32 ~glrVLIVDDd~~~---r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~M-PdmD--GleLl~~L-r-~ 103 (632)
.+.+|.+|+-|+.- .+.++.+-+..+..+..+.+..+....+.... .+|+||+|.-- ...+ ..+.+..+ + .
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~ 328 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-DCDVILIDTAGRSQRDKRLIEELKALIEFS 328 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-CCCEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence 45789999998742 23344444445666777777777666666543 58999999631 1112 23333333 3 2
Q ss_pred cCC-CcEEEEeccCCHHHHHHH
Q 006775 104 EMD-LPVIMMSADGRVSAVMRG 124 (632)
Q Consensus 104 ~~~-iPIIvLSa~~d~e~~~eA 124 (632)
... -.++++++........++
T Consensus 329 ~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 329 GEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred CCCCeEEEEEECCCCHHHHHHH
Confidence 122 236667776665544443
No 139
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=67.70 E-value=2.3 Score=37.24 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee
Q 006775 264 VASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 264 taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (632)
...|..++..++..+ +.....++...+.+..|+.|||+||...
T Consensus 3 ~~~Hs~~v~~~~~~~---~~~~~~~~~~~~~l~~aaLlHDig~~~~ 45 (145)
T cd00077 3 RFEHSLRVAQLARRL---AEELGLSEEDIELLRLAALLHDIGKPGT 45 (145)
T ss_pred hHHHHHHHHHHHHHH---HHHhCcCHHHHHHHHHHHHHHhcCCccC
Confidence 457888888888888 6666555556677888999999999865
No 140
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=67.26 E-value=55 Score=29.84 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhCCceEEE--ECCHHHHHHHHHHcCCCceEEEEecCCCCC-CHHHHHHHHhc-cCCCcEEEEeccCCHHH
Q 006775 45 CLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGL-EMDLPVIMMSADGRVSA 120 (632)
Q Consensus 45 ~r~~L~~lL~~~gy~V~~--a~sg~eALe~L~e~~~~pDLVILDi~MPdm-DGleLl~~Lr~-~~~iPIIvLSa~~d~e~ 120 (632)
-...+..+|++.++++.. ....++.++.+... ..||+|.+.+..... ...++++.+|+ .++++||+--.+.....
T Consensus 4 gl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p 82 (127)
T cd02068 4 GLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFP 82 (127)
T ss_pred hHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCH
Confidence 345677888887776543 33455666666542 259999999855543 35667888875 45666665433333222
Q ss_pred HHHHHhcCCCEEEeCCCCHHHHHHHHHHH
Q 006775 121 VMRGIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 121 ~~eAl~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
...+.....||+.+---..-+...++.+
T Consensus 83 -~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 83 -EEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred -HHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 2224444557888765445555555554
No 141
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.21 E-value=26 Score=37.50 Aligned_cols=93 Identities=13% Similarity=0.090 Sum_probs=56.9
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--ceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006775 36 VLVVDDDITCLRILEQMLRR----CL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (632)
Q Consensus 36 VLIVDDd~~~r~~L~~lL~~----~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPI 109 (632)
|||=|.|-...-.+...+++ .. ...+.+.+.++|.+.+.. .+|+|++| +|.-.+--+.++.++....-..
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~---gaDiI~LD-nm~~e~vk~av~~~~~~~~~v~ 248 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE---GAELVLLD-NFPVWQTQEAVQRRDARAPTVL 248 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc---CCCEEEeC-CCCHHHHHHHHHHHhccCCCEE
Confidence 67666664443233333332 22 245678999999999853 48999999 4432222233333333333335
Q ss_pred EEEeccCCHHHHHHHHhcCCCEE
Q 006775 110 IMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 110 IvLSa~~d~e~~~eAl~~GA~DY 132 (632)
|..|+.-+.+.+.+..+.|+|.+
T Consensus 249 ieaSGGI~~~ni~~yA~tGvD~I 271 (289)
T PRK07896 249 LESSGGLTLDTAAAYAETGVDYL 271 (289)
T ss_pred EEEECCCCHHHHHHHHhcCCCEE
Confidence 66787788888888889998754
No 142
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=66.53 E-value=55 Score=32.69 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=60.7
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCceEEEE---CCHHHHHHHHHHcCCCceEEEEecCCCCC-C-HHHHHHHHhcc
Q 006775 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM-D-GFKLLEHIGLE 104 (632)
Q Consensus 34 lrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a---~sg~eALe~L~e~~~~pDLVILDi~MPdm-D-GleLl~~Lr~~ 104 (632)
-+|++. |.+..=...+..+|+..||+|+.. ...++.++.+.+.. ||+|.+...|... . -.++++.++..
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~--pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEK--PLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEccccccCHHHHHHHHHHHHHc
Confidence 356554 344555667888888899998743 35677788887765 9999999887642 2 34566667643
Q ss_pred --C-CCcEEEEeccCCHHHHHHHHhcCCCEEEe
Q 006775 105 --M-DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 105 --~-~iPIIvLSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+ +++|+ +.+..-.. .-+-+.|||.|-.
T Consensus 163 ~~~~~v~i~-vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 163 GYRDSVKFM-VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred CCCCCCEEE-EEChhcCH--HHHHHhCCcEEeC
Confidence 2 34544 44433222 2344679998865
No 143
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=66.16 E-value=2.6 Score=40.41 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcc
Q 006775 262 ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 262 e~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
+..-.|..+|+..++.| |+..+++.+ ....|..||||||+
T Consensus 7 ~~r~~Hsl~Va~~a~~l---A~~~~~d~e---~a~~AGLLHDIGk~ 46 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQL---AEANKLDSK---KAEIAGAYHDLAKF 46 (158)
T ss_pred hHHHHHHHHHHHHHHHH---HHHhCcCHH---HHHHHHHHHHHhcc
Confidence 45678999999999999 988887654 46667889999995
No 144
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=65.82 E-value=32 Score=36.75 Aligned_cols=90 Identities=12% Similarity=0.076 Sum_probs=62.4
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEecC---------------------------------C--CCCCHHHHHHHHhccC
Q 006775 61 TTCSQAAVALDILRERKGCFDVVLSDVH---------------------------------M--PDMDGFKLLEHIGLEM 105 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~---------------------------------M--PdmDGleLl~~Lr~~~ 105 (632)
.-|.+.+||+...+. .+|+|=+=+. . ....++++++++....
T Consensus 117 AD~stleEal~a~~~---Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~ 193 (283)
T cd04727 117 CGARNLGEALRRISE---GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG 193 (283)
T ss_pred ccCCCHHHHHHHHHC---CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc
Confidence 457788888887754 3787765540 0 1234788999987666
Q ss_pred CCcEE--EEeccCCHHHHHHHHhcCCCEEEeCC-----CCHHHHHHHHHHHHHhh
Q 006775 106 DLPVI--MMSADGRVSAVMRGIRHGACDYLIKP-----IREEELKNIWQHVVRKR 153 (632)
Q Consensus 106 ~iPII--vLSa~~d~e~~~eAl~~GA~DYL~KP-----~~~eeL~~~L~~vlrk~ 153 (632)
.+||| ...+-...+.+.++++.||+.++.=. -++.+....+...+.++
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~ 248 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY 248 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhc
Confidence 79997 66666688999999999999986543 34666666666555543
No 145
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=64.59 E-value=28 Score=35.28 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=54.8
Q ss_pred HHHHHHHcCC-----CCCCCcccccccCCCCCCCccEEEEEeCCHHHHHHHHHHHHhCCc--eE-EEECCHHHHHHHHHH
Q 006775 4 LQRIVQSSGG-----SGYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRE 75 (632)
Q Consensus 4 ~~~lv~~mGG-----~g~Gs~~~~~~~~p~~~p~glrVLIVDDd~~~r~~L~~lL~~~gy--~V-~~a~sg~eALe~L~e 75 (632)
++.|+.+++- -|.+.|+..-.. ....|.+-+|.-||-++...+..+..++..++ .| ....++.+.+..+..
T Consensus 37 L~~l~~~~~~k~vLEIGt~~GySal~l-a~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~ 115 (205)
T PF01596_consen 37 LQMLVRLTRPKRVLEIGTFTGYSALWL-AEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN 115 (205)
T ss_dssp HHHHHHHHT-SEEEEESTTTSHHHHHH-HHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEeccccccHHHHH-HHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh
Confidence 4556666655 244444432221 11223456999999999999999999998765 23 356778888877664
Q ss_pred cC--CCceEEEEecC
Q 006775 76 RK--GCFDVVLSDVH 88 (632)
Q Consensus 76 ~~--~~pDLVILDi~ 88 (632)
.. ..||+||+|..
T Consensus 116 ~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 116 DGEEGQFDFVFIDAD 130 (205)
T ss_dssp TTTTTSEEEEEEEST
T ss_pred ccCCCceeEEEEccc
Confidence 32 36999999984
No 146
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.58 E-value=36 Score=38.13 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=37.2
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCceEEEECCHHHHHHHHHHcC--CCceEEEEecC
Q 006775 32 AGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERK--GCFDVVLSDVH 88 (632)
Q Consensus 32 ~glrVLIVDDd~~~---r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~--~~pDLVILDi~ 88 (632)
.+.+|.+|+-|+.- .+.++..-+..+..+..+.+..+..+.+.... ..+|+||+|.-
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTA 294 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTV 294 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 35789999988642 34555555555666666777776655554321 25899999973
No 147
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=63.56 E-value=56 Score=31.24 Aligned_cols=70 Identities=19% Similarity=0.148 Sum_probs=49.3
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCC--------CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEE
Q 006775 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi~MPd--------mDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL 133 (632)
.+.+..++.+.... .+|.|+++...|. ..+++.+++++....+||++..+- ..+.+.++++.|++.+.
T Consensus 101 ~~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~ 176 (196)
T cd00564 101 STHSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAEVLAAGADGVA 176 (196)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 34566666665432 3899998755442 346788888876677899888765 45778888999999875
Q ss_pred eC
Q 006775 134 IK 135 (632)
Q Consensus 134 ~K 135 (632)
.=
T Consensus 177 ~g 178 (196)
T cd00564 177 VI 178 (196)
T ss_pred Ee
Confidence 54
No 148
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=62.84 E-value=88 Score=31.47 Aligned_cols=68 Identities=15% Similarity=0.295 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHcCCCce-EEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEe
Q 006775 65 QAAVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 65 sg~eALe~L~e~~~~pD-LVILDi~MPdm-DG--leLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+..+..+.+.+. .++ +++.|+.-.++ .| +++++.++....+|+|+-.+-.+.+.+.++++.||++++.
T Consensus 146 ~~~~~~~~~~~~--g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEEL--GLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 334455555443 366 77788754332 12 6888888766789999988888888998999999999876
No 149
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=62.59 E-value=24 Score=34.72 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=58.2
Q ss_pred EEEEeCCHHHHHHHHHHHHh----C--Cc-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006775 36 VLVVDDDITCLRILEQMLRR----C--LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 36 VLIVDDd~~~r~~L~~lL~~----~--gy-~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iP 108 (632)
|||-|.+-...-.+...++. . .. ....+.+.+++.+.++. .+|+|.+|-.-| .+--++++.++....-.
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~-~~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLDNMSP-EDLKEAVEELRELNPRV 128 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEES-CH-HHHHHHHHHHHHHTTTS
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEecCcCH-HHHHHHHHHHhhcCCcE
Confidence 67766665544444444433 2 22 34578899999998874 389999996443 22333444444434346
Q ss_pred EEEEeccCCHHHHHHHHhcCCCEEE
Q 006775 109 VIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 109 IIvLSa~~d~e~~~eAl~~GA~DYL 133 (632)
.|..++.-+.+.+.+..+.|+|.+-
T Consensus 129 ~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 129 KIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp EEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 7778888888888888899987653
No 150
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=62.29 E-value=31 Score=34.23 Aligned_cols=67 Identities=21% Similarity=0.243 Sum_probs=45.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCce---EEEECCHHHHHHHHHHcCCCceEEEEecCCCCC-C-H-HHHHHHHh
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYN---VTTCSQAAVALDILRERKGCFDVVLSDVHMPDM-D-G-FKLLEHIG 102 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~---V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdm-D-G-leLl~~Lr 102 (632)
-+|..||-++.....++..++..+.. .+...+...++..+......+|+|++|- |-. . . .++++.|.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP--PY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP--PYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC--CcccchHHHHHHHHHH
Confidence 47999999999999999999987632 3466788888776644445699999993 422 2 2 45677764
No 151
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=62.11 E-value=1.1e+02 Score=30.75 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=49.3
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEe
Q 006775 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi~MPd-------mDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
.+.+.+++..+. +. ..|.|+++-.-.+ ...++++++++...++||++.-+-...+.+.+++..|++....
T Consensus 108 ~v~~~~~~~~~~-~~--gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~v 184 (236)
T cd04730 108 TVTSVEEARKAE-AA--GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQM 184 (236)
T ss_pred eCCCHHHHHHHH-Hc--CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEE
Confidence 445666655443 33 3788887643111 2457788888766678999888877778889999999998866
Q ss_pred C
Q 006775 135 K 135 (632)
Q Consensus 135 K 135 (632)
-
T Consensus 185 g 185 (236)
T cd04730 185 G 185 (236)
T ss_pred c
Confidence 4
No 152
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=60.51 E-value=99 Score=35.33 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhCC-ceEEEEC------CHHHHHHHHHHcCCCceEEEEecCCCCCC-HHHHHHHHhc-cCCCcEEEE
Q 006775 42 DITCLRILEQMLRRCL-YNVTTCS------QAAVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGL-EMDLPVIMM 112 (632)
Q Consensus 42 d~~~r~~L~~lL~~~g-y~V~~a~------sg~eALe~L~e~~~~pDLVILDi~MPdmD-GleLl~~Lr~-~~~iPIIvL 112 (632)
.|.-...+...|+..| ++|.... +.++..+.+++. .||+|.+...-+... ..++++.+|+ .++++||+=
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~--~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G 98 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAH--CPDLVLITAITPAIYIACETLKFARERLPNAIIVLG 98 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhc--CcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4666778888898888 5775543 233444555554 499999987555432 4567777764 467777654
Q ss_pred eccCCHHHHHHHH-hcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 113 SADGRVSAVMRGI-RHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 113 Sa~~d~e~~~eAl-~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
-.+.... ..+++ +....||+..--....+.+.++.+..
T Consensus 99 G~h~t~~-~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~ 137 (497)
T TIGR02026 99 GIHPTFM-FHQVLTEAPWIDFIVRGEGEETVVKLIAALEN 137 (497)
T ss_pred CCCcCcC-HHHHHhcCCCccEEEeCCcHHHHHHHHHHHHc
Confidence 4343332 33455 34566888887666667777766543
No 153
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=60.11 E-value=98 Score=27.23 Aligned_cols=92 Identities=16% Similarity=0.054 Sum_probs=53.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCH-HHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQA-AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg-~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIv 111 (632)
.+|++||.++...+.+ ...++.+....-. .+.++.+.-. ..+.+|+...- +..-+.++..++. .+..+||+
T Consensus 22 ~~vvvid~d~~~~~~~----~~~~~~~i~gd~~~~~~l~~a~i~--~a~~vv~~~~~-d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 22 IDVVVIDRDPERVEEL----REEGVEVIYGDATDPEVLERAGIE--KADAVVILTDD-DEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp SEEEEEESSHHHHHHH----HHTTSEEEES-TTSHHHHHHTTGG--CESEEEEESSS-HHHHHHHHHHHHHHTTTSEEEE
T ss_pred CEEEEEECCcHHHHHH----HhcccccccccchhhhHHhhcCcc--ccCEEEEccCC-HHHHHHHHHHHHHHCCCCeEEE
Confidence 5899999998764433 3445665543322 2344443333 47888887542 2334556666664 56778887
Q ss_pred EeccCCHHHHHHHHhcCCCEEEe
Q 006775 112 MSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
... +.+........|++..+.
T Consensus 95 ~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 95 RVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp EES--SHHHHHHHHHTT-SEEEE
T ss_pred EEC--CHHHHHHHHHCCcCEEEC
Confidence 664 344455556789987653
No 154
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.09 E-value=36 Score=36.09 Aligned_cols=93 Identities=12% Similarity=0.169 Sum_probs=57.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CCc---eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh---cc
Q 006775 35 RVLVVDDDITCLRILEQMLRR----CLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG---LE 104 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~----~gy---~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr---~~ 104 (632)
.|||-|.|-.....+...++. ..+ ..+.+.+.+||++.+.. .+|+|.+|- ++--++.+.++ ..
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn----~~~e~l~~~v~~~~~~ 226 (273)
T PRK05848 154 CLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDN----MSVEEIKEVVAYRNAN 226 (273)
T ss_pred hhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhhcc
Confidence 366666665544444444432 332 34578999999998863 389999884 23222222222 21
Q ss_pred CCCcEEEEeccCCHHHHHHHHhcCCCEEEe
Q 006775 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 105 ~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
..-..|..++.-+.+.+.+..+.|+|.+.+
T Consensus 227 ~~~~~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 227 YPHVLLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred CCCeEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 122356667777888899999999986543
No 155
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=59.86 E-value=38 Score=34.95 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=41.1
Q ss_pred HHHHHHHHhccCCCcEEEEeccCC------HHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Q 006775 94 GFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 94 GleLl~~Lr~~~~iPIIvLSa~~d------~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
++++++.+|....+|+++++-... .....++.++|+++.+.-.+..+++...++.+.
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~ 126 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAK 126 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 566777777656789888876443 556777889999999986677777766665543
No 156
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=58.85 E-value=35 Score=35.91 Aligned_cols=55 Identities=27% Similarity=0.300 Sum_probs=31.6
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCceEEEEC---CH-H---HHHHHHHHcCCCceEEEEecC
Q 006775 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QA-A---VALDILRERKGCFDVVLSDVH 88 (632)
Q Consensus 32 ~glrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~---sg-~---eALe~L~e~~~~pDLVILDi~ 88 (632)
.+.+|++||-|.. ..+.++.+.+..+..+.... +. . ++++.+.. ..+|+||+|.-
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~--~~~D~ViIDT~ 163 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA--RNIDVVLIDTA 163 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH--CCCCEEEEeCC
Confidence 4679999998853 23445555555565554332 22 2 23333333 24999999973
No 157
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=58.78 E-value=1.2e+02 Score=33.28 Aligned_cols=115 Identities=14% Similarity=0.130 Sum_probs=72.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH------hCCceE--EEECCHHHHHHHHHHcCCCceEEEEecCCC-----CCCHHHHHH
Q 006775 33 GLRVLVVDDDITCLRILEQMLR------RCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLE 99 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~------~~gy~V--~~a~sg~eALe~L~e~~~~pDLVILDi~MP-----dmDGleLl~ 99 (632)
.+|+=|+.|++....-+...++ +.|+.| .+..+...|.++.. .. + +.++=+--| +..-.+.++
T Consensus 167 ~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~-~g--~-~avmPl~~pIGsg~gv~~p~~i~ 242 (326)
T PRK11840 167 LVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLED-AG--A-VAVMPLGAPIGSGLGIQNPYTIR 242 (326)
T ss_pred eEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHh-cC--C-EEEeeccccccCCCCCCCHHHHH
Confidence 3566666666544332222222 337877 35556666655543 32 4 333222111 122345667
Q ss_pred HHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEe-----CCCCHHHHHHHHHHHHH
Q 006775 100 HIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (632)
Q Consensus 100 ~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~-----KP~~~eeL~~~L~~vlr 151 (632)
.+...+++|||+=.+-...+.+..|++.|+++.|. |--++-.+.++++.++.
T Consensus 243 ~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 243 LIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred HHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 77666789999988999999999999999999854 55677788888887775
No 158
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=58.77 E-value=15 Score=36.97 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=53.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecC--CCCCC--HHHHHHHHhccCCCcE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMD--GFKLLEHIGLEMDLPV 109 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~--MPdmD--GleLl~~Lr~~~~iPI 109 (632)
++||+||....+--.|..+|+..+.++....+....++.++.. .||.|++.-. -|... ..++++++ ...+||
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~--~pd~iviSPGPG~P~d~G~~~~~i~~~--~~~~Pi 77 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEAL--KPDAIVISPGPGTPKDAGISLELIRRF--AGRIPI 77 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhc--CCCEEEEcCCCCChHHcchHHHHHHHh--cCCCCE
Confidence 6899999999999999999999988887776653333344443 3899999642 22222 34555554 356888
Q ss_pred EEEec
Q 006775 110 IMMSA 114 (632)
Q Consensus 110 IvLSa 114 (632)
+=+.-
T Consensus 78 LGVCL 82 (191)
T COG0512 78 LGVCL 82 (191)
T ss_pred EEECc
Confidence 87653
No 159
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=58.27 E-value=95 Score=30.97 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=59.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEEC-------CHHHHHHHHHHcCCCceEEEEecCC-C-CCCHHHHHHHHhccCC
Q 006775 36 VLVVDDDITCLRILEQMLRRCLYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHM-P-DMDGFKLLEHIGLEMD 106 (632)
Q Consensus 36 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~-------sg~eALe~L~e~~~~pDLVILDi~M-P-dmDGleLl~~Lr~~~~ 106 (632)
|||-|-|...++.++..-++.|-++.+.+ ++++.++++.+.+++|-+|++|-.= . ...|-+.++.+..+++
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 56667778888888888888888887654 7889999999888788888887532 3 3457788888877777
Q ss_pred Cc---EEEEecc
Q 006775 107 LP---VIMMSAD 115 (632)
Q Consensus 107 iP---IIvLSa~ 115 (632)
+- +|.+++.
T Consensus 83 IeVLG~iAVASn 94 (180)
T PF14097_consen 83 IEVLGAIAVASN 94 (180)
T ss_pred ceEEEEEEEEec
Confidence 65 4455443
No 160
>PLN02591 tryptophan synthase
Probab=57.98 E-value=35 Score=35.71 Aligned_cols=58 Identities=9% Similarity=0.171 Sum_probs=44.7
Q ss_pred CHHHHHHHHhccCCCcEEEEeccC------CHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Q 006775 93 DGFKLLEHIGLEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 93 DGleLl~~Lr~~~~iPIIvLSa~~------d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
+.+++++++|...++|+|+++-.. -.....++.++|+++.|.-.+..+|.......+.
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 467888888866789998887543 2344677789999999998899888887776653
No 161
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=57.91 E-value=5.3 Score=34.19 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee
Q 006775 262 ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 262 e~taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (632)
++...|..++..++..+ +.+.+. ...+.+..++.|||+||...
T Consensus 3 ~~~~~H~~~v~~~~~~l---~~~~~~--~~~~~~~~a~LlHDig~~~~ 45 (124)
T smart00471 3 YHVFEHSLRVAQLAAAL---AEELGL--LDIELLLLAALLHDIGKPGT 45 (124)
T ss_pred chHHHHHHHHHHHHHHH---HHHcCh--HHHHHHHHHHHHHcccCccC
Confidence 35678999999888888 777664 23356777889999999975
No 162
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.58 E-value=72 Score=32.42 Aligned_cols=82 Identities=9% Similarity=0.136 Sum_probs=45.2
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHH
Q 006775 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREE 140 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~e 140 (632)
....+.+++++.++... .--+=++++.|..-+.++.+++++....--+|=.-.--+.+.+.+++++||. |+.-|....
T Consensus 10 ir~~~~~~a~~ia~al~-~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~ 87 (201)
T PRK06015 10 LLIDDVEHAVPLARALA-AGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQ 87 (201)
T ss_pred EEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCH
Confidence 33445555554443211 0122245555556668888888864332112223334567788899999997 777775555
Q ss_pred HHHH
Q 006775 141 ELKN 144 (632)
Q Consensus 141 eL~~ 144 (632)
++.+
T Consensus 88 ~vi~ 91 (201)
T PRK06015 88 ELLA 91 (201)
T ss_pred HHHH
Confidence 5544
No 163
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=56.62 E-value=44 Score=35.33 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=34.0
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCceEEEECCHHHHHHH---HHHcCCCceEEEEecC
Q 006775 33 GLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDI---LRERKGCFDVVLSDVH 88 (632)
Q Consensus 33 glrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~sg~eALe~---L~e~~~~pDLVILDi~ 88 (632)
+.+|.+++-|.. ....++...+..++.+..+.+..+..+. +... ..+|+||+|.-
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt~ 163 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDTA 163 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEECC
Confidence 457888877654 3344455555567887776666544333 3332 25899999973
No 164
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=56.51 E-value=12 Score=35.73 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecc
Q 006775 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (632)
Q Consensus 66 g~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa~ 115 (632)
..++++.++.. .+|+||+|. ++... .....+ ...+..||+++..
T Consensus 80 ~~~~~~~~~~~--~~D~iiIDt--aG~~~-~~~~~~-~~Ad~~ivv~tpe 123 (148)
T cd03114 80 TPEVIRVLDAA--GFDVIIVET--VGVGQ-SEVDIA-SMADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHHhc--CCCEEEEEC--CccCh-hhhhHH-HhCCEEEEEECCC
Confidence 34566666543 599999998 55432 222322 2345566666665
No 165
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=56.01 E-value=46 Score=35.20 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=67.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006775 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvLS 113 (632)
.|-+.=.++.....+..+|....|.+....+.++.++.++.+++.+|.+|+.... .-..+..++.. ..-+|+|++.
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~---~~~~~~~~L~e~g~LLPaVil~ 78 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSP---LLPPLFNQLYEQGILLPAVILG 78 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTS---TTHHHHHHHHHCT----EEEES
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCC---CcHHHHHHHHHcCccccEEEEe
Confidence 3455556778888999999888899999999999999999888889999998754 34567777753 4467999886
Q ss_pred ccCCHHHHHHHHhcCCCEE-----EeCCCCHHHHHHHHHHHHHh
Q 006775 114 ADGRVSAVMRGIRHGACDY-----LIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DY-----L~KP~~~eeL~~~L~~vlrk 152 (632)
........ -..|..+| -.+.-..++|-..|.+++.+
T Consensus 79 ~~~s~~~~---~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsr 119 (283)
T PF07688_consen 79 SSESASTT---SESGTVLYHSAEVHLPIDQLEQLSYNIDQAISR 119 (283)
T ss_dssp ---S--TT---S--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHH
T ss_pred cCcccccC---CCCCceeeehHheEccHHHHHHHHHHHHHHHHH
Confidence 53221110 01333333 34344455666666665544
No 166
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=55.76 E-value=99 Score=33.18 Aligned_cols=84 Identities=14% Similarity=0.146 Sum_probs=58.9
Q ss_pred HHHHHhCCceE-EEECCHHHHHHHHHHcCCCceEEEEecCCC-----CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHH
Q 006775 50 EQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (632)
Q Consensus 50 ~~lL~~~gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MP-----dmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~e 123 (632)
-..++..+..| ..+.+.++|..+.+. .+|.|++.-.-. ...-++++++++...++|||.--+-.+...+..
T Consensus 102 i~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~ 178 (307)
T TIGR03151 102 IPRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAA 178 (307)
T ss_pred HHHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHH
Confidence 33444445544 456788887666543 489988844321 223588888887666799999888888888999
Q ss_pred HHhcCCCEEEeCC
Q 006775 124 GIRHGACDYLIKP 136 (632)
Q Consensus 124 Al~~GA~DYL~KP 136 (632)
++..||+....=.
T Consensus 179 al~~GA~gV~iGt 191 (307)
T TIGR03151 179 AFALGAEAVQMGT 191 (307)
T ss_pred HHHcCCCEeecch
Confidence 9999999876643
No 167
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=54.94 E-value=2.2e+02 Score=31.65 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=64.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCce-E-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH-hccCCCcEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~-V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~L-r~~~~iPII 110 (632)
-+|+.+|-++...+.++..++..+.. + ....++...+ ......||+|++|- ++. ...++..+ +.-..-.++
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l---~~~~~~fDvIdlDP--fGs-~~~fld~al~~~~~~glL 143 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVL---RYRNRKFHVIDIDP--FGT-PAPFVDSAIQASAERGLL 143 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHH---HHhCCCCCEEEeCC--CCC-cHHHHHHHHHhcccCCEE
Confidence 47999999999999999988765432 2 2334444443 33223599999996 432 23455443 333344578
Q ss_pred EEeccCCHHH----HHHHH-hcCCCEEEeCC-C-CHHHHHHHHHHHHHh
Q 006775 111 MMSADGRVSA----VMRGI-RHGACDYLIKP-I-REEELKNIWQHVVRK 152 (632)
Q Consensus 111 vLSa~~d~e~----~~eAl-~~GA~DYL~KP-~-~~eeL~~~L~~vlrk 152 (632)
.+|+.+.... ...++ ++|+.- .|. + ...-|+-.+..+.|.
T Consensus 144 ~vTaTD~~~L~G~~~~~~~rkYga~~--~~~~~~~E~glRiLlg~i~r~ 190 (374)
T TIGR00308 144 LVTATDTSALCGNYPKSCLRKYGANP--VKTESCHESALRLLLGFVKRT 190 (374)
T ss_pred EEEecccHHhcCCChHHHHHHhCCcc--cCCcchHHHHHHHHHHHHHHH
Confidence 8886554432 34455 677653 343 2 333455555555543
No 168
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=54.78 E-value=13 Score=39.23 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=35.8
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEec
Q 006775 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (632)
Q Consensus 33 glrVLIVDDd~~~---r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi 87 (632)
+.+|.+|+-|+.- .+.+..+-+..+..+..+.+..+..+.+.... .+|+||+|.
T Consensus 224 ~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-~~d~vliDt 280 (282)
T TIGR03499 224 NKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-DKDLILIDT 280 (282)
T ss_pred CCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-CCCEEEEeC
Confidence 3789999988632 33444444444666666777777666666543 589999995
No 169
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=54.75 E-value=42 Score=35.22 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=43.3
Q ss_pred CHHHHHHHHh-ccCCCcEEEEecc------CCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHH
Q 006775 93 DGFKLLEHIG-LEMDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 93 DGleLl~~Lr-~~~~iPIIvLSa~------~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
+.+++++++| ..+++|+|+++-. .-.....++.++|+++.|.-.+..++....+..+
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 3577788887 5578999988844 3344577888999999999778888887766655
No 170
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=54.56 E-value=46 Score=34.79 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=43.2
Q ss_pred CHHHHHHHHhcc-CCCcEEEEeccCC------HHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHH
Q 006775 93 DGFKLLEHIGLE-MDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 93 DGleLl~~Lr~~-~~iPIIvLSa~~d------~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
+.+++++.+|.. .++|+++++-... .....++.++|+++.+.-.+..++....+..+
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 357778888755 6889887776554 56677888999999999888888876666554
No 171
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=53.65 E-value=1.2e+02 Score=31.00 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=49.1
Q ss_pred eEEEECCHHHHHHHHHHc-CCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHhcCCCEEEeCC
Q 006775 59 NVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 59 ~V~~a~sg~eALe~L~e~-~~~pDLVILDi~MPdmDGleLl~~Lr~~-~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
-|....+.+++++.++.. ...+.++=+ .|-..+.++.++++++. +++. |-.-.--+.+.+.+++++||. |+.-|
T Consensus 12 aVlr~~~~e~a~~~~~al~~~Gi~~iEi--t~~t~~a~~~i~~l~~~~~~~~-vGAGTVl~~~~a~~a~~aGA~-FivsP 87 (204)
T TIGR01182 12 PVIRIDDVDDALPLAKALIEGGLRVLEV--TLRTPVALDAIRLLRKEVPDAL-IGAGTVLNPEQLRQAVDAGAQ-FIVSP 87 (204)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCEEEE--eCCCccHHHHHHHHHHHCCCCE-EEEEeCCCHHHHHHHHHcCCC-EEECC
Confidence 455666777776655432 123554444 44445688888888643 3322 223334567788899999997 66777
Q ss_pred CCHHHHHH
Q 006775 137 IREEELKN 144 (632)
Q Consensus 137 ~~~eeL~~ 144 (632)
....++.+
T Consensus 88 ~~~~~v~~ 95 (204)
T TIGR01182 88 GLTPELAK 95 (204)
T ss_pred CCCHHHHH
Confidence 54444443
No 172
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=53.41 E-value=43 Score=35.80 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=47.6
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEE
Q 006775 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 59 ~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL 133 (632)
..+.+.+.++|.+.++. .+|+|++| +|...+--++++.++....-.++-.|+.-+.+.+.+....|+|-+.
T Consensus 192 IeVEv~tleqa~ea~~a---gaDiI~LD-n~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 192 IVVEADTPKEAIAALRA---QPDVLQLD-KFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred EEEECCCHHHHHHHHHc---CCCEEEEC-CCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 44678899999999864 48999999 4443333344444432222335667777888888888889987543
No 173
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=52.76 E-value=1e+02 Score=30.15 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=49.3
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEecCCCC--------CCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHhcCCCE
Q 006775 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACD 131 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~MPd--------mDGleLl~~Lr~-~~~iPIIvLSa~~d~e~~~eAl~~GA~D 131 (632)
.++.+.+++.+..+ . .+|.|.++-..+. ..|++.++++.. .+.+||+++.+- +.+.+.++++.|+++
T Consensus 101 ~s~h~~~e~~~a~~-~--g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~g 176 (196)
T TIGR00693 101 VSTHNLEELAEAEA-E--GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADG 176 (196)
T ss_pred EeCCCHHHHHHHhH-c--CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCE
Confidence 46777777766443 2 4899998765542 237888888854 346898887655 567788888999988
Q ss_pred EEe
Q 006775 132 YLI 134 (632)
Q Consensus 132 YL~ 134 (632)
+..
T Consensus 177 va~ 179 (196)
T TIGR00693 177 VAV 179 (196)
T ss_pred EEE
Confidence 754
No 174
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=52.15 E-value=48 Score=35.80 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=30.2
Q ss_pred CccEEEEEeCCHHHH---HHHHHHHHhCCceEEEEC---CH----HHHHHHHHHcCCCceEEEEecC
Q 006775 32 AGLRVLVVDDDITCL---RILEQMLRRCLYNVTTCS---QA----AVALDILRERKGCFDVVLSDVH 88 (632)
Q Consensus 32 ~glrVLIVDDd~~~r---~~L~~lL~~~gy~V~~a~---sg----~eALe~L~e~~~~pDLVILDi~ 88 (632)
.+.+|+|++-|..-. +.+...-...+..+.... +. .+++..... ..+|+||+|.-
T Consensus 141 ~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~--~~~D~ViIDTa 205 (318)
T PRK10416 141 QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA--RGIDVLIIDTA 205 (318)
T ss_pred cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEeCC
Confidence 467999999886332 223333444455554432 22 233333333 35999999973
No 175
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=51.87 E-value=1.6e+02 Score=32.73 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=63.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvL 112 (632)
.++++||.|.+. ++.++.+.......+.-.-..++..+++.. .|++++=.. .+.-|+.+++.+. ..+|||..
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA--~G~PVI~s 361 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA--SGVPVVAA 361 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH--cCCCEEEc
Confidence 457777776653 344555544332222223334555555543 577665322 2333556666653 46888854
Q ss_pred eccCCHHHHHHHHhc---CCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 113 SADGRVSAVMRGIRH---GACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 113 Sa~~d~e~~~eAl~~---GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.. .. ..+.+.. |-.+++..|-+.++|...+..++.
T Consensus 362 ~~-gg---~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 362 RA-GG---IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred CC-CC---cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 32 22 2344555 889999999999999999988764
No 176
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.55 E-value=42 Score=37.20 Aligned_cols=88 Identities=14% Similarity=0.033 Sum_probs=50.7
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecC-CCCCCH--HHHHHHHhc--cC
Q 006775 34 LRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH-MPDMDG--FKLLEHIGL--EM 105 (632)
Q Consensus 34 lrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~-MPdmDG--leLl~~Lr~--~~ 105 (632)
.+|.+|..|.. ..+.|+.+-+..+..+..+.+..+....+.+.. .+|+||+|.- +...|. .+.+..+.. .+
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~ 246 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTP 246 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCEEEEcCCCCCcccHHHHHHHHHHhccCCC
Confidence 47888877664 345555555666777777776666555555443 5899999963 222232 233444422 12
Q ss_pred CCcEEEEeccCCHHHHH
Q 006775 106 DLPVIMMSADGRVSAVM 122 (632)
Q Consensus 106 ~iPIIvLSa~~d~e~~~ 122 (632)
.-.++++++....+...
T Consensus 247 ~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 247 VQRLLLLNATSHGDTLN 263 (374)
T ss_pred CeEEEEecCccChHHHH
Confidence 23477777766554433
No 177
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.20 E-value=65 Score=34.52 Aligned_cols=94 Identities=14% Similarity=0.075 Sum_probs=56.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--c-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCC
Q 006775 35 RVLVVDDDITCLRILEQMLRR----CL--Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~----~g--y-~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~ 106 (632)
-|||-|.|-.....+...+.. .+ . ....+.+.+||.+.+.. .+|+|.+|- |.-.+--+.++.++. .+.
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LDn-~~~e~l~~av~~~~~~~~~ 243 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLDN-MPVDLMQQAVQLIRQQNPR 243 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHHHHhcCCC
Confidence 477777765444334444432 33 2 23578899999998853 489999993 322122223333332 344
Q ss_pred CcEEEEeccCCHHHHHHHHhcCCCEEE
Q 006775 107 LPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 107 iPIIvLSa~~d~e~~~eAl~~GA~DYL 133 (632)
++ +..++--+.+.+.+....|++..-
T Consensus 244 i~-leAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 244 VK-IEASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred eE-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 54 445566677888888899998653
No 178
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=51.18 E-value=1.5e+02 Score=32.54 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=54.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCce---------------EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHH
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYN---------------VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKL 97 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~---------------V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleL 97 (632)
.++++||-|.+.-...++..++..+.. |.......+...++.. .|++++--...+.-|..+
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~----aDi~~v~~S~~e~~g~~~ 337 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAI----ADIAFVGGSLVKRGGHNP 337 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHh----CCEEEECCCcCCCCCCCH
Confidence 356666666665445566665554432 2222222333333321 466555222212234444
Q ss_pred HHHHhccCCCcEEEEeccCCHHHHHHHH-hcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 98 LEHIGLEMDLPVIMMSADGRVSAVMRGI-RHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 98 l~~Lr~~~~iPIIvLSa~~d~e~~~eAl-~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
++.+. ..+|||.--...+.....+.+ +. +++..|-+.++|...+..++.
T Consensus 338 lEAma--~G~PVI~g~~~~~~~e~~~~~~~~---g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 338 LEPAA--FGVPVISGPHTFNFKEIFERLLQA---GAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHH--hCCCEEECCCccCHHHHHHHHHHC---CCeEEECCHHHHHHHHHHHhc
Confidence 44442 467887532223333333333 33 456667788999988888764
No 179
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=51.16 E-value=50 Score=34.78 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=43.8
Q ss_pred CHHHHHHHHhccCCCcEEEEeccC------CHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHH
Q 006775 93 DGFKLLEHIGLEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 93 DGleLl~~Lr~~~~iPIIvLSa~~------d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
+.+++++++|....+|+|++|-.. -.....++.++|+++.+.-.+..+|....+..+
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 357888888866789988887553 345677888999999999888888876666554
No 180
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=51.01 E-value=91 Score=27.72 Aligned_cols=71 Identities=20% Similarity=0.125 Sum_probs=48.0
Q ss_pred eCCHHHHHHHHHHHHhCCceEEEEC---CHHHHHHHHHHcCCCceEEEEecCCCCC-CHHHHHHHHh-ccC-CCcEEEE
Q 006775 40 DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIG-LEM-DLPVIMM 112 (632)
Q Consensus 40 DDd~~~r~~L~~lL~~~gy~V~~a~---sg~eALe~L~e~~~~pDLVILDi~MPdm-DGleLl~~Lr-~~~-~iPIIvL 112 (632)
|.++.-...+..+++..|+++.... ..++.++.+.+. .||+|.+...+... ..++.+..++ ..+ +++|++=
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~--~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvG 86 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEE--DADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHc--CCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEe
Confidence 5566667788888999999887543 556666766664 49999999877643 2455555554 344 5666654
No 181
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=50.25 E-value=69 Score=38.86 Aligned_cols=116 Identities=16% Similarity=0.062 Sum_probs=63.6
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCC-CCCC--HHHHHHHHh-c-cC
Q 006775 34 LRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM-PDMD--GFKLLEHIG-L-EM 105 (632)
Q Consensus 34 lrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~M-PdmD--GleLl~~Lr-~-~~ 105 (632)
.+|.+|+-|.. ..+.++.+-+..+..+..+.+..+..+.++... .+|+||+|.-= ...+ -.+.+..+. . .+
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p 294 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRP 294 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-CCCEEEEeCCCCCccCHHHHHHHHHHhccCCC
Confidence 47888887753 234555555556767777778888777777654 68999999621 1122 233333432 1 23
Q ss_pred CCcEEEEeccCCHHHH---HHHHhc----CCCEEE-eCCCCHHHHHHHHHHHH
Q 006775 106 DLPVIMMSADGRVSAV---MRGIRH----GACDYL-IKPIREEELKNIWQHVV 150 (632)
Q Consensus 106 ~iPIIvLSa~~d~e~~---~eAl~~----GA~DYL-~KP~~~eeL~~~L~~vl 150 (632)
.-.++++++....+.. .+.|+. +.+++| +|=-....+=.++.-+.
T Consensus 295 ~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~ 347 (767)
T PRK14723 295 VRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVI 347 (767)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHH
Confidence 3456666665544433 344532 566664 45322233333443333
No 182
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=49.43 E-value=83 Score=31.63 Aligned_cols=67 Identities=10% Similarity=0.188 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcCCCce-EEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcC-CCEEEe
Q 006775 66 AAVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDYLI 134 (632)
Q Consensus 66 g~eALe~L~e~~~~pD-LVILDi~MPdm-DG--leLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~G-A~DYL~ 134 (632)
..+..+.+.+.. ++ +++.|+...+. .| ++++++++....+|+|.-.+-.+.+.+.++++.| +++.+.
T Consensus 148 ~~e~~~~~~~~g--~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFEDAG--VKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHhcC--CCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 345555555433 56 78888764332 34 6888888766679999988888999999999988 888875
No 183
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=49.08 E-value=2.9e+02 Score=27.86 Aligned_cols=66 Identities=21% Similarity=0.323 Sum_probs=44.0
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 80 pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.|++++-....+.-|+.+++.+. ..+|||.. .... ..+.+..+..+++.++-+.+++.+++..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a--~G~Pvi~~-~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA--AGVPVIAS-DIGG---MAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH--CCCCEEEC-CCCC---HHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 46666533223344666777764 45787753 2222 3455677888999999999999999988875
No 184
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.82 E-value=1.7e+02 Score=29.79 Aligned_cols=93 Identities=16% Similarity=0.090 Sum_probs=58.8
Q ss_pred HHHHhCC-ceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC-CCc-EEE-EeccCCHHHHHHHHh
Q 006775 51 QMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLP-VIM-MSADGRVSAVMRGIR 126 (632)
Q Consensus 51 ~lL~~~g-y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~-~iP-IIv-LSa~~d~e~~~eAl~ 126 (632)
..|...+ .-|....+.++++..++... .--+=++.+.|-.-+.++.++.++... +-| +++ .-.--+.+.+.++++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~ 86 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL 86 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH
Confidence 3444433 45667778888877665421 123446666676777999999996533 222 333 334457788899999
Q ss_pred cCCCEEEeCCCCHHHHHHH
Q 006775 127 HGACDYLIKPIREEELKNI 145 (632)
Q Consensus 127 ~GA~DYL~KP~~~eeL~~~ 145 (632)
+||. |+.-|....++.+.
T Consensus 87 aGA~-FivsP~~~~~v~~~ 104 (213)
T PRK06552 87 AGAQ-FIVSPSFNRETAKI 104 (213)
T ss_pred cCCC-EEECCCCCHHHHHH
Confidence 9997 77778555555443
No 185
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=48.50 E-value=1.3e+02 Score=30.30 Aligned_cols=101 Identities=21% Similarity=0.291 Sum_probs=54.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--C----c---------eEEEECCHHHHHHHHHHc-CCCceEEEEecCC-CCCCHHHH
Q 006775 35 RVLVVDDDITCLRILEQMLRRC--L----Y---------NVTTCSQAAVALDILRER-KGCFDVVLSDVHM-PDMDGFKL 97 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~~--g----y---------~V~~a~sg~eALe~L~e~-~~~pDLVILDi~M-PdmDGleL 97 (632)
+..||..-+..++.+++++..+ | | .|..+.+.++|++.+++. ...|-+|-+|..- ++.-.++-
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~ 123 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAE 123 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHH
Confidence 5788999899999999998753 2 1 278999999999988763 2358999999883 44445555
Q ss_pred HHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCC
Q 006775 98 LEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (632)
Q Consensus 98 l~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~ 138 (632)
+++.-...+-|++++-+.+- ....+.+ ..+||+..|+.
T Consensus 124 lr~~l~~~~~P~LllFGTGw-GL~~ev~--~~~D~iLePI~ 161 (185)
T PF09936_consen 124 LRRMLEEEDRPVLLLFGTGW-GLAPEVM--EQCDYILEPIR 161 (185)
T ss_dssp HHHHHHH--S-EEEEE--TT----HHHH--TT-SEEB--TT
T ss_pred HHHHHhccCCeEEEEecCCC-CCCHHHH--HhcCeeEcccc
Confidence 55443345567666644322 1222333 35789999974
No 186
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=48.36 E-value=39 Score=38.21 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=48.4
Q ss_pred ccEEEEEeCCHHHH---HHHHHHHHhCCceEEEEC---CH----HHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006775 33 GLRVLVVDDDITCL---RILEQMLRRCLYNVTTCS---QA----AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 33 glrVLIVDDd~~~r---~~L~~lL~~~gy~V~~a~---sg----~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr 102 (632)
+.+|+||+-|+.-. +.++.+-+..+..+.... +. .++++.++.. .+|+||+|.-=-...--++++++.
T Consensus 128 G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~--~~DvViIDTaGr~~~d~~lm~El~ 205 (429)
T TIGR01425 128 GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKE--NFDIIIVDTSGRHKQEDSLFEEML 205 (429)
T ss_pred CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhC--CCCEEEEECCCCCcchHHHHHHHH
Confidence 57999999886332 223333333344444333 22 2355555543 499999997421112223445443
Q ss_pred c-----cCCCcEEEEeccCC--HHHHHHHHh--cCCCEEE
Q 006775 103 L-----EMDLPVIMMSADGR--VSAVMRGIR--HGACDYL 133 (632)
Q Consensus 103 ~-----~~~iPIIvLSa~~d--~e~~~eAl~--~GA~DYL 133 (632)
. .++..++++.+... .....++|. .+....+
T Consensus 206 ~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~I 245 (429)
T TIGR01425 206 QVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVI 245 (429)
T ss_pred HHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEE
Confidence 1 23434555544332 223345553 3555553
No 187
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=48.24 E-value=86 Score=32.14 Aligned_cols=56 Identities=23% Similarity=0.266 Sum_probs=41.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCce--E-EEECCHHHHHHHHHHc--CCCceEEEEecC
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRER--KGCFDVVLSDVH 88 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~--V-~~a~sg~eALe~L~e~--~~~pDLVILDi~ 88 (632)
.-+|.-+|-++...+..+..++..++. + ....++.+.+..+... ...||+|++|..
T Consensus 93 ~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 93 DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 448999999999999999999887653 2 3456677776665432 236999999964
No 188
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=48.18 E-value=1.4e+02 Score=34.24 Aligned_cols=101 Identities=16% Similarity=0.219 Sum_probs=55.2
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhC-CceEE--EECCHHHHHHHHHHcCCCceEEEEecC--------------CCC
Q 006775 33 GLRVLVVDD----DITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVH--------------MPD 91 (632)
Q Consensus 33 glrVLIVDD----d~~~r~~L~~lL~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~--------------MPd 91 (632)
+..+++||- .....+.++.+-+.+ ...+. .+.+.++|..++.. ..|.|.+.+. .|.
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~a---Gad~I~vg~g~Gs~~~t~~~~~~g~p~ 329 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDA---GADGLRIGMGSGSICITQEVCAVGRPQ 329 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHc---CCCEEEECCcCCcccccchhccCCCCh
Confidence 556677764 233333444433332 22332 35566666666543 3677765432 222
Q ss_pred CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCC
Q 006775 92 MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 92 mDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
...+.-+..+.....+|||.=.+-.....+.+|+.+||+....=.
T Consensus 330 ~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~ 374 (495)
T PTZ00314 330 ASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGS 374 (495)
T ss_pred HHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECc
Confidence 222111222223356888876677788889999999999876643
No 189
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=47.81 E-value=2.3e+02 Score=29.84 Aligned_cols=58 Identities=9% Similarity=0.134 Sum_probs=42.3
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCE------EEeCCCCHHHHHHHHHHHHHh
Q 006775 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD------YLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 95 leLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~D------YL~KP~~~eeL~~~L~~vlrk 152 (632)
++.+.++++..++|||..-+-.+.+.+.+++..||+. ++.+|.-..++.+-+.+.+.+
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~ 286 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKA 286 (300)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHH
Confidence 3566777666679999998888999999999999886 456675555555555555543
No 190
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=47.32 E-value=1.5e+02 Score=34.24 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=46.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEEC-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~-sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr-~~~~iPII 110 (632)
+..+++||.|+...+.++ +.++.+...+ +..+.++.+.- ++.|.+++-..-.+ +-..++..++ .+++.+||
T Consensus 440 g~~vvvId~d~~~~~~~~----~~g~~~i~GD~~~~~~L~~a~i--~~a~~viv~~~~~~-~~~~iv~~~~~~~~~~~ii 512 (558)
T PRK10669 440 GIPLVVIETSRTRVDELR----ERGIRAVLGNAANEEIMQLAHL--DCARWLLLTIPNGY-EAGEIVASAREKRPDIEII 512 (558)
T ss_pred CCCEEEEECCHHHHHHHH----HCCCeEEEcCCCCHHHHHhcCc--cccCEEEEEcCChH-HHHHHHHHHHHHCCCCeEE
Confidence 456777777765444333 2355544332 12233333322 23676666542211 1223444444 35678888
Q ss_pred EEeccCCHHHHHHHHhcCCCEEE
Q 006775 111 MMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL 133 (632)
..+.+ .+......+.|++..+
T Consensus 513 ar~~~--~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 513 ARAHY--DDEVAYITERGANQVV 533 (558)
T ss_pred EEECC--HHHHHHHHHcCCCEEE
Confidence 87653 3444445578988555
No 191
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=47.24 E-value=2.8e+02 Score=30.27 Aligned_cols=98 Identities=11% Similarity=0.124 Sum_probs=63.0
Q ss_pred EEEEEeCC----HHHHHHHHHHHHhCC-ceEE--EECCHHHHHHHHHHcCCCceEEEEecCCC-----------CCC--H
Q 006775 35 RVLVVDDD----ITCLRILEQMLRRCL-YNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMD--G 94 (632)
Q Consensus 35 rVLIVDDd----~~~r~~L~~lL~~~g-y~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MP-----------dmD--G 94 (632)
.+++||-- ....+.++.+-+.+. ..|. .+.+.++|..+++. .+|.+.+-..-. +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 67888633 333334444433332 2332 47788888877653 388876542111 112 4
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 95 leLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+..+..+.....+|||.-.+-.....+.+|+.+||+.+..=
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 55577776555799998888888999999999999987664
No 192
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=47.01 E-value=3.6e+02 Score=29.15 Aligned_cols=109 Identities=14% Similarity=0.201 Sum_probs=61.7
Q ss_pred ccEEEEEeCCH--------HHHHHHHHHHHhCCceEEEEC--CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006775 33 GLRVLVVDDDI--------TCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 33 glrVLIVDDd~--------~~r~~L~~lL~~~gy~V~~a~--sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr 102 (632)
.++++||.+.+ ...+.++.+....+..+.... +.++..+++.. .|++++-....+.-|.-+++.+.
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH
Confidence 35677776532 223344444444333443332 34455555542 57777643332333455666553
Q ss_pred ccCCCcEEEEeccCCHHHHHHHHhcCCCEE-EeCCCCHHHHHHHHHHHHH
Q 006775 103 LEMDLPVIMMSADGRVSAVMRGIRHGACDY-LIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 103 ~~~~iPIIvLSa~~d~e~~~eAl~~GA~DY-L~KP~~~eeL~~~L~~vlr 151 (632)
..+|||... ... ..+.+..|.++| +..|.+.++|.+.+.+++.
T Consensus 300 --~G~PVI~s~-~gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 300 --AGKPVLAST-KGG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred --cCCCEEEeC-CCC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 468887643 332 234566788898 5678999999999988764
No 193
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=46.83 E-value=2.7e+02 Score=29.13 Aligned_cols=104 Identities=14% Similarity=0.097 Sum_probs=58.8
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCceEE-EE--CCHHHHHHHHHHcCCCceEEEEecCCCC------CCHHHHHHHHh
Q 006775 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT-TC--SQAAVALDILRERKGCFDVVLSDVHMPD------MDGFKLLEHIG 102 (632)
Q Consensus 33 glrVLIVDDd~-~~r~~L~~lL~~~gy~V~-~a--~sg~eALe~L~e~~~~pDLVILDi~MPd------mDGleLl~~Lr 102 (632)
+..-+|+-|.+ .....+...+++.+.... .+ .+..+-++.+.+....+..++.=..-.+ .+-.+.++++|
T Consensus 115 GvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr 194 (256)
T TIGR00262 115 GVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLK 194 (256)
T ss_pred CCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHH
Confidence 34444444443 444556666666665532 22 2223344444443323555544111111 12466777777
Q ss_pred ccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCC
Q 006775 103 LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 103 ~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
...+.||++=.+-.+.+.+.++.++||+.++.-.
T Consensus 195 ~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 195 AYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred hhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 6667787765555568889999999999999864
No 194
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=46.62 E-value=1.6e+02 Score=31.04 Aligned_cols=107 Identities=23% Similarity=0.241 Sum_probs=60.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCc--eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPII 110 (632)
.++++++.+.+. .+.++..++..+. .+.......+..+++.. .|++++=.. .+.-|..+++.+. ..+|||
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~-~Eg~~~~~lEAma--~G~Pvv 300 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSL-AEGISNTILEAMA--SGLPVI 300 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccc-cccCchHHHHHHH--cCCCEE
Confidence 356666665443 2445555554432 22222222333333332 466554222 2333566777664 467887
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
. |..+. ..+.+..|..+++..|-+.+++...+..++.
T Consensus 301 ~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 301 A-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred E-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 6 33332 3455667888999999999999999988764
No 195
>PRK10119 putative hydrolase; Provisional
Probab=46.61 E-value=9.6 Score=39.42 Aligned_cols=36 Identities=8% Similarity=0.149 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCc
Q 006775 265 ASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGR 306 (632)
Q Consensus 265 aSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGK 306 (632)
-.|+.||...++.| ++.-+.+ .+.+..|+-||||+.
T Consensus 27 ~~Hi~RV~~lA~~I---a~~e~~D---~~vv~lAAlLHDv~d 62 (231)
T PRK10119 27 ICHFRRVWATAQKL---AADDDVD---MLVVLTACYFHDIVS 62 (231)
T ss_pred hHHHHHHHHHHHHH---HHhcCCC---HHHHHHHHHHhhcch
Confidence 57999999999999 7766654 446667899999975
No 196
>PRK07695 transcriptional regulator TenI; Provisional
Probab=46.39 E-value=1.7e+02 Score=28.85 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=47.9
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEE
Q 006775 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi~MPd-------mDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DY 132 (632)
++.+.+++.+... . ..|.|++.-..+. ..|++.++++.....+||+.+-+- +.+.+.++++.|++.+
T Consensus 101 s~~s~e~a~~a~~-~--Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 101 SVHSLEEAIQAEK-N--GADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred eCCCHHHHHHHHH-c--CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 5667777665443 2 4898887643332 236788888866567999988776 7778888999999877
No 197
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=46.07 E-value=44 Score=35.90 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=47.1
Q ss_pred CHHHHHHHHhccCCCcEE--EEeccCCHHHHHHHHhcCCCEEEe-----CCCCHHHHHHHHHHHHHhhc
Q 006775 93 DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 93 DGleLl~~Lr~~~~iPII--vLSa~~d~e~~~eAl~~GA~DYL~-----KP~~~eeL~~~L~~vlrk~~ 154 (632)
.+++++++++....+||| ...+-...+.+..++++||+.++. |.-++.+....+.+++..+.
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~ 258 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHYD 258 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcC
Confidence 478888988766679998 666666889999999999999854 44477777777777766553
No 198
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=46.04 E-value=1.4e+02 Score=32.05 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=59.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CCce---EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006775 35 RVLVVDDDITCLRILEQMLRR----CLYN---VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~----~gy~---V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~i 107 (632)
-|||=|.|-...-.++..+++ .++. -+.+.+.+++.+++.. .+|+|++|-.-| ..--+.++.+ ....-
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a---gaDiImLDNm~~-e~~~~av~~l-~~~~~ 234 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA---GADIIMLDNMSP-EELKEAVKLL-GLAGR 234 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc---CCCEEEecCCCH-HHHHHHHHHh-ccCCc
Confidence 378888777666656666654 2442 3578999999999875 389999994332 1222233332 12333
Q ss_pred cEEEEeccCCHHHHHHHHhcCCCEE
Q 006775 108 PVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 108 PIIvLSa~~d~e~~~eAl~~GA~DY 132 (632)
.++-.|+.-..+.+......|++-+
T Consensus 235 ~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 235 ALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred eEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 4555777778888877778888743
No 199
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=45.73 E-value=3e+02 Score=26.84 Aligned_cols=99 Identities=10% Similarity=0.061 Sum_probs=60.0
Q ss_pred ccEEEEEeCCH--HHHHHHHHHHHhCCceE----EEECCHHHHHHHHHHcCCCceEEEEecCC-C----CCCHHHHHHHH
Q 006775 33 GLRVLVVDDDI--TCLRILEQMLRRCLYNV----TTCSQAAVALDILRERKGCFDVVLSDVHM-P----DMDGFKLLEHI 101 (632)
Q Consensus 33 glrVLIVDDd~--~~r~~L~~lL~~~gy~V----~~a~sg~eALe~L~e~~~~pDLVILDi~M-P----dmDGleLl~~L 101 (632)
+...+++.+.. .....+...+++.+..+ ..+.+..++++.+. . ..|.|.+...- + ...+.+.++.+
T Consensus 77 Gad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~-~--~~d~v~~~~~~~~~~~~~~~~~~~i~~~ 153 (202)
T cd04726 77 GADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK-L--GVDIVILHRGIDAQAAGGWWPEDDLKKV 153 (202)
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH-C--CCCEEEEcCcccccccCCCCCHHHHHHH
Confidence 44455554432 22334444555555544 35667788877443 2 37888774211 1 23457777777
Q ss_pred hccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 102 r~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+...++||++.-+- ..+.+.++++.||+.++.=
T Consensus 154 ~~~~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 154 KKLLGVKVAVAGGI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred HhhcCCCEEEECCc-CHHHHHHHHhcCCCEEEEe
Confidence 65467888766555 4788889999999987554
No 200
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=45.67 E-value=1.2e+02 Score=31.33 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 67 AVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 67 ~eALe~L~e~~~~pDLVILDi~MPdm-DG--leLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
.+.++.+.+.. --.++++|+..-++ .| +++++.+.....+|||+-.+-.+.+.+.++++.|++..+.=
T Consensus 151 ~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 151 FSFVRQLSDIP-LGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred HHHHHHHHHcC-CCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 44445444432 23799999976543 33 67788887667899999888899999999999999998763
No 201
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=45.61 E-value=1.5e+02 Score=34.17 Aligned_cols=101 Identities=15% Similarity=0.225 Sum_probs=65.7
Q ss_pred CccEEEEEeCCHH----HHHHHHHHHHhC-CceEE--EECCHHHHHHHHHHcCCCceEEEEecC--------------CC
Q 006775 32 AGLRVLVVDDDIT----CLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVH--------------MP 90 (632)
Q Consensus 32 ~glrVLIVDDd~~----~r~~L~~lL~~~-gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~--------------MP 90 (632)
.+..|+++|-..- ..+.++.+=+.+ +..+. .+.+.++|..+++. ..|.|.+-++ .|
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~ 335 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCC
Confidence 3567888875421 123333333333 23332 57888998888753 4898877431 12
Q ss_pred CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 91 DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 91 dmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
....+..+..+.....+|||.=.+-.....+.+|+.+||+....=
T Consensus 336 ~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 336 QATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred cccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 223455566665556799999888889999999999999987664
No 202
>PRK13566 anthranilate synthase; Provisional
Probab=45.60 E-value=82 Score=37.99 Aligned_cols=81 Identities=22% Similarity=0.258 Sum_probs=51.7
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEe--cCCCC-CCHHHHHHHHhccCC
Q 006775 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD--VHMPD-MDGFKLLEHIGLEMD 106 (632)
Q Consensus 30 ~p~glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILD--i~MPd-mDGleLl~~Lr~~~~ 106 (632)
...+++|||||........+...|+..|++|..+..... .+.+... .||.||+- -..|. .+-.++++++. ..+
T Consensus 523 ~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~~--~~DgVVLsgGpgsp~d~~~~~lI~~a~-~~~ 598 (720)
T PRK13566 523 VGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDRV--NPDLVVLSPGPGRPSDFDCKATIDAAL-ARN 598 (720)
T ss_pred CCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhhc--CCCEEEECCCCCChhhCCcHHHHHHHH-HCC
Confidence 346789999999988889999999999998877665432 1222222 48988872 11121 12334444442 346
Q ss_pred CcEEEEec
Q 006775 107 LPVIMMSA 114 (632)
Q Consensus 107 iPIIvLSa 114 (632)
+||+-+.-
T Consensus 599 iPILGICl 606 (720)
T PRK13566 599 LPIFGVCL 606 (720)
T ss_pred CcEEEEeh
Confidence 89887763
No 203
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=45.55 E-value=1.2e+02 Score=29.55 Aligned_cols=79 Identities=16% Similarity=0.093 Sum_probs=52.8
Q ss_pred HHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCC-------CHHHHHHHHhccCCCcEEEEeccCCHHHHHH
Q 006775 51 QMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM-------DGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (632)
Q Consensus 51 ~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdm-------DGleLl~~Lr~~~~iPIIvLSa~~d~e~~~e 123 (632)
..+......-.+|.+.+++.++.+ . .+|.|++.-..|.. -|++.++++.....+||+.+-+-. .+.+.+
T Consensus 90 ~~~~~~~~ig~S~h~~~e~~~a~~-~--g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~-~~~i~~ 165 (180)
T PF02581_consen 90 KLLGPDKIIGASCHSLEEAREAEE-L--GADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGIT-PENIPE 165 (180)
T ss_dssp HHHTTTSEEEEEESSHHHHHHHHH-C--TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHH
T ss_pred hhcccceEEEeecCcHHHHHHhhh-c--CCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHH
Confidence 334333333458999999766543 2 48999998765543 389999988777779999997764 445667
Q ss_pred HHhcCCCEEE
Q 006775 124 GIRHGACDYL 133 (632)
Q Consensus 124 Al~~GA~DYL 133 (632)
+.+.|++++-
T Consensus 166 l~~~Ga~gvA 175 (180)
T PF02581_consen 166 LREAGADGVA 175 (180)
T ss_dssp HHHTT-SEEE
T ss_pred HHHcCCCEEE
Confidence 8899998864
No 204
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=45.47 E-value=1.1e+02 Score=31.32 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEe
Q 006775 65 QAAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~MPdm-DG--leLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+..+.++.+... .-.++++|+..-++ .| +++++.+.....+||++-.+-.+.+.+.++++.|++..+.
T Consensus 147 ~~~~~~~~~~~~--~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 147 GPEELLRRLAKW--PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred CHHHHHHHHHHh--CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 355666666543 23699999976542 22 6778888766789999988899999999999999998875
No 205
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=45.43 E-value=1e+02 Score=35.16 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=62.2
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-Cc--eEEEECCHHHHHHHHHHcCCCceEEEEecCCCC------------C
Q 006775 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (632)
Q Consensus 32 ~glrVLIVDDd----~~~r~~L~~lL~~~-gy--~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd------------m 92 (632)
.+.+++++|.. ..+.+.++.+-... .. -+..+.+.++|..+++. ..|.|.+.+ -|+ .
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~-g~gs~~~~r~~~~~g~ 314 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGI-GPGSICTTRIVAGVGV 314 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECC-CCCccccceeecCCCc
Confidence 45778888864 22333444443333 22 34567788888887754 378876533 121 1
Q ss_pred CHHHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 93 DGleLl~~Lr---~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
.-++++..++ ....+|||.=.+-.....+.+|+.+||+..+.=
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 2244554443 234688888777788899999999999987654
No 206
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=45.33 E-value=1.1e+02 Score=32.22 Aligned_cols=115 Identities=19% Similarity=0.211 Sum_probs=66.5
Q ss_pred ccEEEEEeCCHH----HHHHH--HHHHHhCCceEEEEC--CHHHHHHHHHHcCCCceEEEEecCCCCCCH-----HHHHH
Q 006775 33 GLRVLVVDDDIT----CLRIL--EQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDG-----FKLLE 99 (632)
Q Consensus 33 glrVLIVDDd~~----~r~~L--~~lL~~~gy~V~~a~--sg~eALe~L~e~~~~pDLVILDi~MPdmDG-----leLl~ 99 (632)
.+|+=|+.|+.. ..+.+ .+.|-+.||.|..+. |..-|.++ .+.. .. +++=+--|-.+| ...++
T Consensus 93 wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL-~d~G--ca-avMPlgsPIGSg~Gi~n~~~l~ 168 (247)
T PF05690_consen 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRL-EDAG--CA-AVMPLGSPIGSGRGIQNPYNLR 168 (247)
T ss_dssp EEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHH-HHTT---S-EBEEBSSSTTT---SSTHHHHH
T ss_pred eEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHH-HHCC--CC-EEEecccccccCcCCCCHHHHH
Confidence 467777777643 22222 234556699987443 44444443 3322 22 344455554443 35667
Q ss_pred HHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeC-----CCCHHHHHHHHHHHHH
Q 006775 100 HIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVR 151 (632)
Q Consensus 100 ~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K-----P~~~eeL~~~L~~vlr 151 (632)
.|+...++|||+=.+-.....+..+++.|++..|.- --++-.+..+++..+.
T Consensus 169 ~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 169 IIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 776666999999999999999999999999999875 3567777777777665
No 207
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=45.04 E-value=2.2e+02 Score=30.52 Aligned_cols=103 Identities=22% Similarity=0.275 Sum_probs=59.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCceE-----EEECCHHHHHHHHHHcCCCceEEEEecC---CC------CCCH-
Q 006775 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNV-----TTCSQAAVALDILRERKGCFDVVLSDVH---MP------DMDG- 94 (632)
Q Consensus 30 ~p~glrVLIVDDd~~~r~~L~~lL~~~gy~V-----~~a~sg~eALe~L~e~~~~pDLVILDi~---MP------dmDG- 94 (632)
|..+-|||=+|-|+..++....+-++.+..+ ..-.-.+...+++.+.+ ||++++-=+ .- +.+.
T Consensus 101 f~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlViTGHD~~~K~~~d~~dl~~Y 178 (283)
T TIGR02855 101 FGMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVR--PDILVITGHDAYSKNKGNYMDLNAY 178 (283)
T ss_pred CCCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhC--CCEEEEeCchhhhcCCCChhhhhhh
Confidence 4444589999999999888777777765544 33334555667777665 998887321 11 1111
Q ss_pred ---HHHHHHH---hc-cCCCc-EEEEeccCCHHHHHHHHhcCCCEEEeCC
Q 006775 95 ---FKLLEHI---GL-EMDLP-VIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 95 ---leLl~~L---r~-~~~iP-IIvLSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
--+++.+ |. .++.- .|++++- -...-+..+++||+ |-.-|
T Consensus 179 rnSkyFVeaVk~aR~y~~~~D~LVIFAGA-CQS~yEall~AGAN-FASSP 226 (283)
T TIGR02855 179 RHSKYFVETVREARKYVPSLDQLVIFAGA-CQSHFESLIRAGAN-FASSP 226 (283)
T ss_pred hhhHHHHHHHHHHHhcCCCcccEEEEcch-hHHHHHHHHHcCcc-ccCCc
Confidence 1233333 32 23332 4444443 34445566799997 55544
No 208
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=44.37 E-value=91 Score=23.68 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=34.8
Q ss_pred ccchHHHHHHHHHHHHHhccccccHHHHHHHhcCCCcChHHHHHHHHHH
Q 006775 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKF 271 (632)
Q Consensus 223 v~wt~ELh~qFl~av~~Lgidka~pK~ILelM~v~gltre~taSHLqRv 271 (632)
..|+.+-+..|.+++...|.+ .-+.|...|. .+-|..++.+|-+++
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhh
Confidence 469999999999999999966 3467777766 466777888887665
No 209
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=44.08 E-value=3.4e+02 Score=27.05 Aligned_cols=78 Identities=14% Similarity=-0.001 Sum_probs=51.8
Q ss_pred hCCceE-EEECCHHHHHHHHHHcCCCceEEEEec-CCC-CCCHHHHHHHHhcc--CCCcEEEEeccCCHHHHHHHHhcCC
Q 006775 55 RCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV-HMP-DMDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGA 129 (632)
Q Consensus 55 ~~gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi-~MP-dmDGleLl~~Lr~~--~~iPIIvLSa~~d~e~~~eAl~~GA 129 (632)
..+..+ ..+.+.+++.+..+ . .+|.+.+-- ... ...+++++++++.. .++|+|...+-...+.+.+++++||
T Consensus 119 ~~g~~~~v~v~~~~e~~~~~~-~--g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga 195 (217)
T cd00331 119 ELGMEVLVEVHDEEELERALA-L--GAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGA 195 (217)
T ss_pred HcCCeEEEEECCHHHHHHHHH-c--CCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCC
Confidence 345554 35667777666554 2 377776541 100 11245777777644 4689999999888899999999999
Q ss_pred CEEEeC
Q 006775 130 CDYLIK 135 (632)
Q Consensus 130 ~DYL~K 135 (632)
++++.-
T Consensus 196 ~gvivG 201 (217)
T cd00331 196 DAVLIG 201 (217)
T ss_pred CEEEEC
Confidence 998653
No 210
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=43.78 E-value=1.6e+02 Score=29.62 Aligned_cols=83 Identities=14% Similarity=0.102 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCC---------CCHHHHHHHHhc--cCCCcEEEEeccCCHHHHHH---HHhcCCC
Q 006775 65 QAAVALDILRERKGCFDVVLSDVHMPD---------MDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR---GIRHGAC 130 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~MPd---------mDGleLl~~Lr~--~~~iPIIvLSa~~d~e~~~e---Al~~GA~ 130 (632)
+..+.++.+... .+|.|++|+.=.. .+-.+++..++. .....+++.....+.....+ ++..|++
T Consensus 9 ~~~~~~~~a~~~--g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~ 86 (221)
T PF03328_consen 9 NSPKMLEKAAAS--GADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGAD 86 (221)
T ss_dssp TSHHHHHHHHTT--CSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHhc--CCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCCC
Confidence 334455555443 4999999986533 222234444432 23457777777777666666 8999999
Q ss_pred EEEeCC-CCHHHHHHHHHHH
Q 006775 131 DYLIKP-IREEELKNIWQHV 149 (632)
Q Consensus 131 DYL~KP-~~~eeL~~~L~~v 149 (632)
+++.-= -+.++++.+++.+
T Consensus 87 gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 87 GIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp EEEETT--SHHHHHHHHHHH
T ss_pred eeeccccCcHHHHHHHHHHH
Confidence 876543 4677777666654
No 211
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=43.69 E-value=1.3e+02 Score=29.24 Aligned_cols=78 Identities=14% Similarity=0.232 Sum_probs=51.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CceEEEEC-------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~--gy~V~~a~-------sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr 102 (632)
.+.+|.++...+...+.+...|+.. +..+..+. +..+.++.+.+.. ||+|++-+.+|... .++.+.+
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~--pdiv~vglG~PkQE--~~~~~~~ 120 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASG--ADILFVGLGAPKQE--LWIARHK 120 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcC--CCEEEEECCCCHHH--HHHHHHH
Confidence 3689999999999999988888875 34443321 1223456666554 99999999999754 3444554
Q ss_pred ccCCCcEEEEe
Q 006775 103 LEMDLPVIMMS 113 (632)
Q Consensus 103 ~~~~iPIIvLS 113 (632)
.....++++-.
T Consensus 121 ~~l~~~v~~~v 131 (171)
T cd06533 121 DRLPVPVAIGV 131 (171)
T ss_pred HHCCCCEEEEe
Confidence 43455666544
No 212
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=43.45 E-value=63 Score=33.26 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=40.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCce--EEEECCHHHHHHHHHH-cCCCceEEEEecCCC
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRE-RKGCFDVVLSDVHMP 90 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~--V~~a~sg~eALe~L~e-~~~~pDLVILDi~MP 90 (632)
.-++.-||-++...+..++.+++.++. +..... -+|++.+.. ....||+||+|..=+
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~ 143 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKA 143 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCChh
Confidence 348999999999999999999998653 333331 344555443 234699999998543
No 213
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=43.34 E-value=29 Score=34.63 Aligned_cols=74 Identities=12% Similarity=0.154 Sum_probs=47.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCC--CCCC--HHHHHHHHhccCCCcEEE
Q 006775 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM--PDMD--GFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 36 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~M--PdmD--GleLl~~Lr~~~~iPIIv 111 (632)
|||||.+..+-..|...|++.++++......+..++.+... .||.||+-=.- |... -.++++.+ ...+||+-
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iIlsgGP~~p~~~~~~~~~i~~~--~~~~PvLG 77 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENM--KPDFLMISPGPCSPNEAGISMEVIRYF--AGKIPIFG 77 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhC--CCCEEEECCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 89999999999999999999988887766554333434333 48888874211 1111 12333332 24688887
Q ss_pred Ee
Q 006775 112 MS 113 (632)
Q Consensus 112 LS 113 (632)
+.
T Consensus 78 IC 79 (195)
T PRK07649 78 VC 79 (195)
T ss_pred Ec
Confidence 65
No 214
>PRK14098 glycogen synthase; Provisional
Probab=42.63 E-value=2.9e+02 Score=31.45 Aligned_cols=112 Identities=9% Similarity=0.079 Sum_probs=62.7
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCceEE--EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006775 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~-~~r~~L~~lL~~~gy~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPI 109 (632)
.++++|+.+-+ ...+.++.+..+.+-.|. ...+..++.+++.. .|+.++=-. .+.-|+..++.++ ..+|+
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS~-~E~~Gl~~lEAma--~G~pp 408 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPGK-IESCGMLQMFAMS--YGTIP 408 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCCC-CCCchHHHHHHHh--CCCCe
Confidence 46777777643 345566666655432332 23344444444432 577775322 2344666666553 45555
Q ss_pred EEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 110 IvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
|+.....-.+.+.+....+..+|+..|.+.++|..++.+++.
T Consensus 409 Vv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 409 VAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred EEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 554332222222222234678999999999999999988764
No 215
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.59 E-value=2.8e+02 Score=28.64 Aligned_cols=85 Identities=12% Similarity=0.140 Sum_probs=51.3
Q ss_pred ceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc--CCCc-EEE-EeccCCHHHHHHHHhcCCCEEE
Q 006775 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDLP-VIM-MSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 58 y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~--~~iP-IIv-LSa~~d~e~~~eAl~~GA~DYL 133 (632)
.-|....+.++|++.++... .--+=++++.|-.-+.++.++.|+.. ...| +++ .-.--+.+.+..++++||. |+
T Consensus 18 i~Vvr~~~~~~a~~~~~al~-~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~-Fi 95 (222)
T PRK07114 18 VPVFYHADVEVAKKVIKACY-DGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGAN-FI 95 (222)
T ss_pred EEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCC-EE
Confidence 45667778888877665421 12233566666666788888877421 1122 222 3334567788899999997 66
Q ss_pred eCCCCHHHHHH
Q 006775 134 IKPIREEELKN 144 (632)
Q Consensus 134 ~KP~~~eeL~~ 144 (632)
.-|....++.+
T Consensus 96 VsP~~~~~v~~ 106 (222)
T PRK07114 96 VTPLFNPDIAK 106 (222)
T ss_pred ECCCCCHHHHH
Confidence 66754455543
No 216
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=42.19 E-value=1e+02 Score=34.86 Aligned_cols=85 Identities=21% Similarity=0.158 Sum_probs=42.7
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCceEEEEC---CHHH-HHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh--
Q 006775 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QAAV-ALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-- 102 (632)
Q Consensus 32 ~glrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~---sg~e-ALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr-- 102 (632)
.+.+|++|+-|.. ..+.++.+....+..+.... +..+ +.+.++... ..|+||+|.---...--+++++++
T Consensus 122 ~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~-~~DvVIIDTAGr~~~d~~lm~El~~l 200 (437)
T PRK00771 122 KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK-KADVIIVDTAGRHALEEDLIEEMKEI 200 (437)
T ss_pred cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh-cCCEEEEECCCcccchHHHHHHHHHH
Confidence 3578999998853 23345555555565554432 3222 223333322 369999997421111223444432
Q ss_pred ---ccCCCcEEEEeccCC
Q 006775 103 ---LEMDLPVIMMSADGR 117 (632)
Q Consensus 103 ---~~~~iPIIvLSa~~d 117 (632)
..++..++++.+...
T Consensus 201 ~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 201 KEAVKPDEVLLVIDATIG 218 (437)
T ss_pred HHHhcccceeEEEecccc
Confidence 134444555555443
No 217
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.09 E-value=3.6e+02 Score=28.92 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=57.9
Q ss_pred EEEEEeCCHHHH--H--HHHHHHH----hCCc---eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 006775 35 RVLVVDDDITCL--R--ILEQMLR----RCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (632)
Q Consensus 35 rVLIVDDd~~~r--~--~L~~lL~----~~gy---~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~ 103 (632)
.|||-|.|-... . .+...+. ..++ ..+.+.+.+++.+.+.. .+|+|++|= |.-.+--+.++.++
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn-~s~e~l~~av~~~~- 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDN-FSLDDLREGVELVD- 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECC-CCHHHHHHHHHHhC-
Confidence 488888886542 1 2444443 2332 34689999999998853 489999994 32222223333333
Q ss_pred cCCCcEEEEeccCCHHHHHHHHhcCCCEE
Q 006775 104 EMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 104 ~~~iPIIvLSa~~d~e~~~eAl~~GA~DY 132 (632)
...+|-.|+.-+.+.+.+....|+|-.
T Consensus 236 --~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 236 --GRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred --CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 233677888888888888888898743
No 218
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=42.05 E-value=2.7e+02 Score=30.17 Aligned_cols=99 Identities=17% Similarity=0.309 Sum_probs=57.5
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhCC-ceEE--EECCHHHHHHHHHHcCCCceEEEEecCCC------------CC
Q 006775 32 AGLRVLVVDD----DITCLRILEQMLRRCL-YNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP------------DM 92 (632)
Q Consensus 32 ~glrVLIVDD----d~~~r~~L~~lL~~~g-y~V~--~a~sg~eALe~L~e~~~~pDLVILDi~MP------------dm 92 (632)
.+.+++++|- .....+.++.+-+... ..+. .+.+.+.|..+++. ..|.|.+.+ -| +.
T Consensus 105 agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~-g~G~~~~t~~~~g~g~ 180 (325)
T cd00381 105 AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGI-GPGSICTTRIVTGVGV 180 (325)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECC-CCCcCcccceeCCCCC
Confidence 3567777763 2333444444333322 3333 46777888776643 478887632 11 11
Q ss_pred CHHHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHhcCCCEEEe
Q 006775 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 93 DGleLl~~Lr---~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
.-+.++..+. ....+|||.--+-.+...+.+++.+||+....
T Consensus 181 p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 181 PQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 1233333332 23368988666667788899999999998766
No 219
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=41.86 E-value=2.9e+02 Score=25.55 Aligned_cols=109 Identities=19% Similarity=0.266 Sum_probs=65.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCc--eEEEECC--HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQ--AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a~s--g~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iP 108 (632)
.++++|+.+.... ..+.......+. .+..... .++..++++. .|++++=... +.-|..+++.+. ..+|
T Consensus 47 ~~~l~i~G~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~--~g~p 118 (172)
T PF00534_consen 47 NYKLVIVGDGEYK-KELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA--CGCP 118 (172)
T ss_dssp TEEEEEESHCCHH-HHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH--TT-E
T ss_pred CeEEEEEcccccc-ccccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc--cccc
Confidence 4677888743332 234444444332 3433333 3455666654 5777765444 445677777764 4567
Q ss_pred EEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 006775 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 109 IIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~ 153 (632)
+|+ +.. ....+.+..+..+++..+.+.+++...+.+++...
T Consensus 119 vI~-~~~---~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 119 VIA-SDI---GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EEE-ESS---THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred eee-ccc---cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 664 332 23456677888999999999999999999988643
No 220
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=41.81 E-value=3.4e+02 Score=28.60 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=40.7
Q ss_pred HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEE------EeCCCCHHHHHHHHHHHHH
Q 006775 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY------LIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 94 GleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DY------L~KP~~~eeL~~~L~~vlr 151 (632)
.++.++++++..++|||...+-.+.+.+.+++.+||+.. +..|.-..++++-+.+.+.
T Consensus 222 ~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~ 285 (301)
T PRK07259 222 ALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLD 285 (301)
T ss_pred cHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHH
Confidence 367778887666899999999999999999999998654 3345444444444444443
No 221
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=41.58 E-value=2.7e+02 Score=28.81 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=39.6
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcC-CCEEEe------CCCCHHHHHHHHH
Q 006775 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDYLI------KPIREEELKNIWQ 147 (632)
Q Consensus 95 leLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~G-A~DYL~------KP~~~eeL~~~L~ 147 (632)
++++++++....+|||...+-.+.+.+.++++.| ++..+. .-++..+++..++
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 6888888777789999999899999999999888 887443 2355555554443
No 222
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=41.48 E-value=2.8e+02 Score=31.26 Aligned_cols=101 Identities=14% Similarity=0.196 Sum_probs=61.8
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-Cce--EEEECCHHHHHHHHHHcCCCceEEEEecCCCC-----------CC
Q 006775 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPD-----------MD 93 (632)
Q Consensus 32 ~glrVLIVDDd----~~~r~~L~~lL~~~-gy~--V~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-----------mD 93 (632)
.+..|++||-- ....+.++.+=+.+ ... +.-+.+.++|..+++. ..|.|.+.+.-.. ..
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCC
Confidence 45678888752 23333333332222 122 3357888898888763 3888886542111 11
Q ss_pred HHHHH---HHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 94 GFKLL---EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 94 GleLl---~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
-+..+ ..+.....+|||.=.+-.....+.+|+.+||+....=
T Consensus 241 ~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 241 QITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 23333 3333345789998888888999999999999987654
No 223
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=41.16 E-value=2e+02 Score=29.06 Aligned_cols=92 Identities=10% Similarity=0.032 Sum_probs=55.6
Q ss_pred HHHhCC-ceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE-EeccCCHHHHHHHHhcCC
Q 006775 52 MLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM-MSADGRVSAVMRGIRHGA 129 (632)
Q Consensus 52 lL~~~g-y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIv-LSa~~d~e~~~eAl~~GA 129 (632)
.|...+ .-|....+.+++++.++..- .-.+=++.+.+-..++.+.++.++.....++++ .-.--+.+.+..++++||
T Consensus 6 ~l~~~~~~~v~r~~~~~~~~~~~~a~~-~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA 84 (206)
T PRK09140 6 PFTKLPLIAILRGITPDEALAHVGALI-EAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGG 84 (206)
T ss_pred HHHhCCEEEEEeCCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCC
Confidence 344433 34556667777776665421 123336666677778888898886544334332 333445677889999999
Q ss_pred CEEEeCCCCHHHHHHH
Q 006775 130 CDYLIKPIREEELKNI 145 (632)
Q Consensus 130 ~DYL~KP~~~eeL~~~ 145 (632)
+ |+.-|....++.+.
T Consensus 85 ~-fivsp~~~~~v~~~ 99 (206)
T PRK09140 85 R-LIVTPNTDPEVIRR 99 (206)
T ss_pred C-EEECCCCCHHHHHH
Confidence 6 66668555555443
No 224
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=40.82 E-value=1.4e+02 Score=32.10 Aligned_cols=91 Identities=9% Similarity=0.060 Sum_probs=56.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----C--CceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006775 35 RVLVVDDDITCLRILEQMLRR----C--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~----~--gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iP 108 (632)
.|||-|.|-...-.+...++. . ....+.+.+.+++.+.++. .+|+|++|-.-| .+--++++.++ .-.
T Consensus 181 ~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~---gaDiI~LDn~s~-e~~~~av~~~~---~~~ 253 (296)
T PRK09016 181 AFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKA---GADIIMLDNFTT-EQMREAVKRTN---GRA 253 (296)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEeCCCCh-HHHHHHHHhhc---CCe
Confidence 367766665444344444432 2 2345688999999999864 389999995333 22223333332 223
Q ss_pred EEEEeccCCHHHHHHHHhcCCCEE
Q 006775 109 VIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 109 IIvLSa~~d~e~~~eAl~~GA~DY 132 (632)
.|..|+.-+.+.+.+..+.|+|.+
T Consensus 254 ~ieaSGGI~~~ni~~yA~tGVD~I 277 (296)
T PRK09016 254 LLEVSGNVTLETLREFAETGVDFI 277 (296)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEE
Confidence 566777778888888889999754
No 225
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=40.42 E-value=9.3 Score=38.36 Aligned_cols=37 Identities=11% Similarity=-0.049 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcc
Q 006775 265 ASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 265 aSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
-.|+.||...+..| |..++++.+- .+.|..|||+.|.
T Consensus 19 ~~H~l~V~~~A~~L---A~~y~~d~~k---A~~AgilHD~aK~ 55 (187)
T COG1713 19 FEHCLGVAETAIEL---AEAYGLDPEK---AYLAGILHDIAKE 55 (187)
T ss_pred HHHHHHHHHHHHHH---HHHhCCCHHH---HHHHHHHHHHHhh
Confidence 46999999999999 9999998765 5667889999997
No 226
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=40.11 E-value=2.9e+02 Score=30.31 Aligned_cols=104 Identities=8% Similarity=0.102 Sum_probs=58.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CceEE-EECC-HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVT-TCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~--gy~V~-~a~s-g~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~i 107 (632)
..+||.||.- .. .......+... ++++. .++. .+.|.+..++.. +. +..| --+++ ...++
T Consensus 2 ~~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~g--i~-~y~~-------~eell----~d~Di 65 (343)
T TIGR01761 2 DVQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILAQGSERSRALAHRLG--VP-LYCE-------VEELP----DDIDI 65 (343)
T ss_pred CCcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhC--CC-ccCC-------HHHHh----cCCCE
Confidence 3578889887 43 33333334332 45554 3433 333443433221 11 1111 11222 23455
Q ss_pred cEEEEec----cCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 108 PVIMMSA----DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 108 PIIvLSa----~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
-+|.+.. ....+.+.+++++|..=++-||+..+|..+.++.+-+
T Consensus 66 ~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 66 ACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred EEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 5555521 2446788899999999999999998777777766544
No 227
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=40.10 E-value=2.1e+02 Score=27.77 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=52.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CceEEEECC-------HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQ-------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~--gy~V~~a~s-------g~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr 102 (632)
.+.+|.++...+...+.+...|... +..+..+.+ .++.++.+... .||+|++-+.+|... .++.+.+
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~--~pdiv~vglG~PkQE--~~~~~~~ 122 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS--GPDIVFVGLGAPKQE--RWIARHR 122 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCCCHHH--HHHHHHH
Confidence 4679999999999999999999875 445543333 33445555554 499999999888644 3455555
Q ss_pred ccCCCcEEEEe
Q 006775 103 LEMDLPVIMMS 113 (632)
Q Consensus 103 ~~~~iPIIvLS 113 (632)
..-..++++-.
T Consensus 123 ~~l~~~v~i~v 133 (172)
T PF03808_consen 123 QRLPAGVIIGV 133 (172)
T ss_pred HHCCCCEEEEE
Confidence 44455554433
No 228
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=39.96 E-value=1.4e+02 Score=31.66 Aligned_cols=94 Identities=14% Similarity=0.044 Sum_probs=57.0
Q ss_pred EEEEeCCHHHHHHH--HHHHH----hC--CceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CC
Q 006775 36 VLVVDDDITCLRIL--EQMLR----RC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MD 106 (632)
Q Consensus 36 VLIVDDd~~~r~~L--~~lL~----~~--gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~-~~ 106 (632)
|||-|+|......+ ...++ .. ......+.+.+++.+.+.. ..|.|.+|-.-|. +--++++.++.. ++
T Consensus 155 vlikdnH~~~~g~~~~~~av~~~R~~~~~~~IgVev~t~eea~~A~~~---gaD~I~ld~~~p~-~l~~~~~~~~~~~~~ 230 (272)
T cd01573 155 ILVFAEHRAFLGGPEPLKALARLRATAPEKKIVVEVDSLEEALAAAEA---GADILQLDKFSPE-ELAELVPKLRSLAPP 230 (272)
T ss_pred eEeehhHHHHhCCchHHHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHHhccCCC
Confidence 88887774433221 12221 11 1234578899999888743 4899999954443 222344445433 46
Q ss_pred CcEEEEeccCCHHHHHHHHhcCCCEEEe
Q 006775 107 LPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 107 iPIIvLSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+|+++.- --+.+.+.+..+.|++.+..
T Consensus 231 i~i~AsG-GI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 231 VLLAAAG-GINIENAAAYAAAGADILVT 257 (272)
T ss_pred ceEEEEC-CCCHHHHHHHHHcCCcEEEE
Confidence 7766544 45677888888999987744
No 229
>PRK04296 thymidine kinase; Provisional
Probab=39.64 E-value=27 Score=34.43 Aligned_cols=80 Identities=23% Similarity=0.295 Sum_probs=41.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCceE--EEECCHHHHHHHHHHcCCCceEEEEec-CCCCCC-HHHHHHHHhccCCC
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDV-HMPDMD-GFKLLEHIGLEMDL 107 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~gy~V--~~a~sg~eALe~L~e~~~~pDLVILDi-~MPdmD-GleLl~~Lr~~~~i 107 (632)
.+.+|+++-..-..+.....++.+.+..+ .......+.++.+.+....+|+|++|= ++-+.+ -.++++.++ ...+
T Consensus 29 ~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvviIDEaq~l~~~~v~~l~~~l~-~~g~ 107 (190)
T PRK04296 29 RGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVLIDEAQFLDKEQVVQLAEVLD-DLGI 107 (190)
T ss_pred cCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEEEEccccCCHHHHHHHHHHHH-HcCC
Confidence 46788888431122222333444444433 235566777776654223589999994 322111 344555443 3455
Q ss_pred cEEEE
Q 006775 108 PVIMM 112 (632)
Q Consensus 108 PIIvL 112 (632)
.||+.
T Consensus 108 ~vi~t 112 (190)
T PRK04296 108 PVICY 112 (190)
T ss_pred eEEEE
Confidence 55554
No 230
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=39.64 E-value=1.2e+02 Score=34.42 Aligned_cols=55 Identities=27% Similarity=0.350 Sum_probs=31.8
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCceEEEEC---CHH----HHHHHHHHcCCCceEEEEecC
Q 006775 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QAA----VALDILRERKGCFDVVLSDVH 88 (632)
Q Consensus 32 ~glrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~---sg~----eALe~L~e~~~~pDLVILDi~ 88 (632)
.+.+|++||-|.. ..+.++.+....+..+..+. +.. ++++.+... .+|+||+|.-
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~--~~DvVIIDTa 191 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKEN--GFDVVIVDTA 191 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCC
Confidence 3678999999842 33344444444455554443 232 334444333 4999999973
No 231
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.54 E-value=2.6e+02 Score=29.98 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=57.8
Q ss_pred cEEEEEe--CCHHHH---HHHHHHHHhCCceEEEECCHHHHHHH-------------HHHcCCCceEEEEecCCCCCCHH
Q 006775 34 LRVLVVD--DDITCL---RILEQMLRRCLYNVTTCSQAAVALDI-------------LRERKGCFDVVLSDVHMPDMDGF 95 (632)
Q Consensus 34 lrVLIVD--Dd~~~r---~~L~~lL~~~gy~V~~a~sg~eALe~-------------L~e~~~~pDLVILDi~MPdmDGl 95 (632)
|+|.|+- +.+... ..+...|+..++.+.........+.. .......+|+||+ -+.||.
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcHH
Confidence 4666662 233333 44555566667777665433222210 0111113677776 266773
Q ss_pred HHHHHHh--ccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 006775 96 KLLEHIG--LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 96 eLl~~Lr--~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~ 154 (632)
+++..+ ....+||+-+- .|-.+||. .++++++...+.++++...
T Consensus 77 -~L~aa~~~~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 77 -FLRTATYVGNSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGDY 122 (292)
T ss_pred -HHHHHHHhcCCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCCc
Confidence 333333 23478888654 35567777 5788999999999987654
No 232
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=39.51 E-value=17 Score=44.37 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee
Q 006775 264 VASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (632)
Q Consensus 264 taSHLqRvr~ylk~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (632)
+..|+..+...++.+ |...|+ .......+.|..|||+||+.-
T Consensus 676 L~eHl~~va~lA~~f---a~~~gl-~~~~~~~~laGllHDlGK~~~ 717 (844)
T TIGR02621 676 LSDHLDNVFEVAKNF---VAKLGL-GDLDKAVRQAARLHDLGKQRP 717 (844)
T ss_pred HHHHHHHHHHHHHHH---HHHcCc-hHHHHHHHHHHHhcccccCCH
Confidence 889999999999999 899887 333333566788999999974
No 233
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=39.32 E-value=5.8e+02 Score=28.49 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=46.9
Q ss_pred CceEEEEecCC----CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEE-----eCCCCHHHHHHHHHHH
Q 006775 79 CFDVVLSDVHM----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL-----IKPIREEELKNIWQHV 149 (632)
Q Consensus 79 ~pDLVILDi~M----PdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL-----~KP~~~eeL~~~L~~v 149 (632)
..|.|.+.... ....+++.+++++...++||++..+- ..+...+++++||+.+. .+.-++.+....+++.
T Consensus 131 GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~ 209 (430)
T PRK07028 131 GVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREA 209 (430)
T ss_pred CCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHH
Confidence 37888765321 12456788888876556888876655 56778889999999764 4444455555555554
Q ss_pred HHh
Q 006775 150 VRK 152 (632)
Q Consensus 150 lrk 152 (632)
+++
T Consensus 210 i~~ 212 (430)
T PRK07028 210 IDS 212 (430)
T ss_pred Hhc
Confidence 443
No 234
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=38.88 E-value=4.8e+02 Score=27.27 Aligned_cols=87 Identities=16% Similarity=0.054 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhCCceE-EEECCHHHHHHHHHHcCCCceEEEEec-C--CCCCCHHHHHHHHh-ccC-CCcEEEEeccCCH
Q 006775 45 CLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV-H--MPDMDGFKLLEHIG-LEM-DLPVIMMSADGRV 118 (632)
Q Consensus 45 ~r~~L~~lL~~~gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi-~--MPdmDGleLl~~Lr-~~~-~iPIIvLSa~~d~ 118 (632)
..+.+.......|.++ ..+.+.+|+...... .+|+|-+.- + ....| ++...++. ..+ ..++|..++-.+.
T Consensus 148 ~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~p~~~~vIaegGI~t~ 223 (260)
T PRK00278 148 QLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLIPSDRLVVSESGIFTP 223 (260)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhCCCCCEEEEEeCCCCH
Confidence 3344444444557664 567888888665532 378776542 1 11223 55566653 233 3588889998899
Q ss_pred HHHHHHHhcCCCEEEeC
Q 006775 119 SAVMRGIRHGACDYLIK 135 (632)
Q Consensus 119 e~~~eAl~~GA~DYL~K 135 (632)
+.+.++.++|++.++.-
T Consensus 224 ed~~~~~~~Gad~vlVG 240 (260)
T PRK00278 224 EDLKRLAKAGADAVLVG 240 (260)
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 99999999999998653
No 235
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=38.87 E-value=3.1e+02 Score=28.18 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCce-EEEEecCC---CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHh-cCCCEEEe------C
Q 006775 67 AVALDILRERKGCFD-VVLSDVHM---PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR-HGACDYLI------K 135 (632)
Q Consensus 67 ~eALe~L~e~~~~pD-LVILDi~M---PdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~-~GA~DYL~------K 135 (632)
.+..+.+.+. .++ +++.|+.- ...--+++++.++....+|||.--+-.+.+...++++ .|+++.+. .
T Consensus 156 ~~~~~~~~~~--g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 156 VEWAKEVEEL--GAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HHHHHHHHHc--CCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 3444444433 354 66766542 1112367788887667899999888888888989887 49988766 2
Q ss_pred CCCHHHHHHHH
Q 006775 136 PIREEELKNIW 146 (632)
Q Consensus 136 P~~~eeL~~~L 146 (632)
-++.++++..+
T Consensus 234 ~~~~~~~~~~~ 244 (253)
T PRK02083 234 EITIGELKAYL 244 (253)
T ss_pred CCCHHHHHHHH
Confidence 35556655444
No 236
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=38.83 E-value=2.4e+02 Score=30.33 Aligned_cols=54 Identities=19% Similarity=0.197 Sum_probs=37.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCceEE--EEC---CHHHHHHHHHHcCCCceEEEE
Q 006775 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT--TCS---QAAVALDILRERKGCFDVVLS 85 (632)
Q Consensus 30 ~p~glrVLIVDDd~~~r~~L~~lL~~~gy~V~--~a~---sg~eALe~L~e~~~~pDLVIL 85 (632)
|...-|||=+|-|+..++....+-++.+..+. .+. -++...+++.+.+ ||++++
T Consensus 102 F~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlVi 160 (287)
T PF05582_consen 102 FERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYR--PDILVI 160 (287)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcC--CCEEEE
Confidence 44455899999999998888777777765543 222 3334456666655 998887
No 237
>PRK04302 triosephosphate isomerase; Provisional
Probab=38.77 E-value=4.3e+02 Score=26.70 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=36.4
Q ss_pred HHHHHHhcc-CCCcEEEEeccCCHHHHHHHHhcCCCEEEeCC--CCHHHHHHHHHH
Q 006775 96 KLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKP--IREEELKNIWQH 148 (632)
Q Consensus 96 eLl~~Lr~~-~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP--~~~eeL~~~L~~ 148 (632)
++++.++.. .++||+.-.+-...+.+..+.+.|+++++.-. +..+.+...++.
T Consensus 162 ~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~ 217 (223)
T PRK04302 162 DAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRD 217 (223)
T ss_pred HHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHH
Confidence 445556643 46899888887888888898999999997654 333444444443
No 238
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=38.50 E-value=1.9e+02 Score=28.56 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=33.3
Q ss_pred ceEEEEecCCCCCCH-------HHHHHHHhcc---CCC-cEEEEeccCCHHHHHHHHhcCCCEEEeCC
Q 006775 80 FDVVLSDVHMPDMDG-------FKLLEHIGLE---MDL-PVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 80 pDLVILDi~MPdmDG-------leLl~~Lr~~---~~i-PIIvLSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
+|.++++..-|+.+| ++.+++++.. ..+ +.|++.+--+.+.+.++.+.|++.++.-.
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgS 199 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGS 199 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 677777654454433 3444444321 122 45556565566778888889999876543
No 239
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=38.46 E-value=4.3e+02 Score=27.11 Aligned_cols=108 Identities=22% Similarity=0.290 Sum_probs=60.1
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCc--eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006775 33 GLRVLVVDDDIT---CLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (632)
Q Consensus 33 glrVLIVDDd~~---~r~~L~~lL~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~i 107 (632)
.++++|+.+.+. ..+.+...+...+. .|......++..+.+.. .|++|+=..-++.-|..+++.+. ..+
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e~~~~~l~EA~a--~G~ 289 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPEAFGRTAVEAQA--MGR 289 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCCCCchHHHHHHh--cCC
Confidence 356666655432 23333334443332 24333333343444432 56666533233445666777663 467
Q ss_pred cEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Q 006775 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 108 PIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
|||+. .... ..+.+..+.++++..+-+.+++...+..++
T Consensus 290 PvI~~-~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 290 PVIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred CEEEc-CCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 88753 3222 245566777899999999999999886554
No 240
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=38.33 E-value=1.4e+02 Score=31.43 Aligned_cols=95 Identities=12% Similarity=0.039 Sum_probs=57.3
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCC---ceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006775 35 RVLVVDDDITCLRILEQML----RRCL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL----~~~g---y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~i 107 (632)
.|||-|+|......+...+ +..+ .....+.+.+++.+.+.. .+|.|.+|-.-|+ +--++++.++..+++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~e-~l~~~v~~i~~~~~i 228 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSPE-ELKEAVKLLKGLPRV 228 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhccCCCe
Confidence 4788777755443332222 2222 234678899999988753 4899999865441 111233334333355
Q ss_pred cEEEEeccCCHHHHHHHHhcCCCEEEe
Q 006775 108 PVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 108 PIIvLSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
| |..++--+.+.+.+..+.|++.+-.
T Consensus 229 ~-i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 229 L-LEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred E-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 5 4455666778888888999987643
No 241
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=38.09 E-value=2.2e+02 Score=30.72 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=53.6
Q ss_pred HHHHhCCce-EEEECCHHHHHHHHHHcCCCceEEEEe-cCCC-----CC-CHHHHHHHHhccCCCcEEEEeccCCHHHHH
Q 006775 51 QMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSD-VHMP-----DM-DGFKLLEHIGLEMDLPVIMMSADGRVSAVM 122 (632)
Q Consensus 51 ~lL~~~gy~-V~~a~sg~eALe~L~e~~~~pDLVILD-i~MP-----dm-DGleLl~~Lr~~~~iPIIvLSa~~d~e~~~ 122 (632)
..+...+.. +..+.+.++|..+++. .+|.|++- ..-. +. +-+.|+..++...++|||.=-+-.+...+.
T Consensus 130 ~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~ia 206 (330)
T PF03060_consen 130 ERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIA 206 (330)
T ss_dssp HHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHH
T ss_pred HHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHH
Confidence 345555554 4589999999887654 38988876 2221 12 246777777766779999988888888899
Q ss_pred HHHhcCCCEEEeC
Q 006775 123 RGIRHGACDYLIK 135 (632)
Q Consensus 123 eAl~~GA~DYL~K 135 (632)
.++..||++...=
T Consensus 207 aal~lGA~gV~~G 219 (330)
T PF03060_consen 207 AALALGADGVQMG 219 (330)
T ss_dssp HHHHCT-SEEEES
T ss_pred HHHHcCCCEeecC
Confidence 9999999998764
No 242
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=38.09 E-value=1.8e+02 Score=29.69 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCCC-C--HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 65 QAAVALDILRERKGCFDVVLSDVHMPDM-D--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~MPdm-D--GleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+..+..+.+.... ..+|++|+.--++ . .+++++++.....+|+|+--+-.+.+.+.++.+.||+..+.-
T Consensus 142 ~~~~~~~~~~~~g--~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~vivg 213 (221)
T TIGR00734 142 SLEEVRDFLNSFD--YGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLVA 213 (221)
T ss_pred cHHHHHHHHHhcC--CEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEh
Confidence 4455555554432 4799999976543 3 378899987767899998888888888888889999988763
No 243
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=37.87 E-value=3.1e+02 Score=30.84 Aligned_cols=106 Identities=16% Similarity=0.198 Sum_probs=59.1
Q ss_pred cEEEEEeC---CHHHHHHHHHHHHhCCc--eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006775 34 LRVLVVDD---DITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 34 lrVLIVDD---d~~~r~~L~~lL~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iP 108 (632)
++++|+.+ ++...+.++.+++..+. .|.... ..+..+++. ..|++++-.. .+.-|+.+++.+. ..+|
T Consensus 325 ~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~----~aDv~vlpS~-~Eg~p~~vlEAma--~G~P 396 (475)
T cd03813 325 AEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLP----KLDVLVLTSI-SEGQPLVILEAMA--AGIP 396 (475)
T ss_pred eEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHH----hCCEEEeCch-hhcCChHHHHHHH--cCCC
Confidence 45555543 23444455555544432 232222 223333332 2577766433 2334566666653 4678
Q ss_pred EEEEeccCCHHHHHHHHhc------CCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 109 VIMMSADGRVSAVMRGIRH------GACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 109 IIvLSa~~d~e~~~eAl~~------GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
||. |.... ..+.+.. |.++++..|-+.++|.+++.+++.
T Consensus 397 VVa-td~g~---~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 397 VVA-TDVGS---CRELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred EEE-CCCCC---hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 876 43333 2344444 678999999999999999988764
No 244
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.80 E-value=2.5e+02 Score=30.25 Aligned_cols=91 Identities=13% Similarity=-0.000 Sum_probs=56.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC------CceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006775 35 RVLVVDDDITCLRILEQMLRRC------LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~~------gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iP 108 (632)
-|||-|.|-...-.+...++.. ....+.+.+.+++.+.+.. .+|+|++|= |+..+--+.++.++ .-.
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDn-mspe~l~~av~~~~---~~~ 250 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDN-FTLDMMREAVRVTA---GRA 250 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHhhc---CCe
Confidence 4788877765554444444321 1233578899999998863 489999994 32222223333332 234
Q ss_pred EEEEeccCCHHHHHHHHhcCCCEE
Q 006775 109 VIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 109 IIvLSa~~d~e~~~eAl~~GA~DY 132 (632)
++-.|+.-..+.+.+..+.|+|-.
T Consensus 251 ~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 251 VLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEE
Confidence 566777778888888888898743
No 245
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=37.79 E-value=62 Score=32.60 Aligned_cols=53 Identities=30% Similarity=0.345 Sum_probs=38.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--ceE-EEECCHHHHHHHHHHcCCCceEEEEec
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCL--YNV-TTCSQAAVALDILRERKGCFDVVLSDV 87 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~g--y~V-~~a~sg~eALe~L~e~~~~pDLVILDi 87 (632)
-++++||-+......+++.++..+ -.+ ....++..++..+... ..||+|++|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCC
Confidence 479999999999999999998765 222 3344555666655433 2499999994
No 246
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=37.71 E-value=1.4e+02 Score=32.79 Aligned_cols=57 Identities=14% Similarity=-0.043 Sum_probs=39.8
Q ss_pred CceEEEEecCCCCC-CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 79 CFDVVLSDVHMPDM-DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 79 ~pDLVILDi~MPdm-DGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
.+|+|++|+-=... .-++.+++||....-+.|+--.-...+.+..++++||+....-
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 58999999854432 3567888887543333443333667788899999999987644
No 247
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=37.67 E-value=1.6e+02 Score=33.52 Aligned_cols=101 Identities=19% Similarity=0.228 Sum_probs=53.8
Q ss_pred CccEEEEEeCC---HHHHHHHHHHHHhCCceEEEEC-------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH
Q 006775 32 AGLRVLVVDDD---ITCLRILEQMLRRCLYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 32 ~glrVLIVDDd---~~~r~~L~~lL~~~gy~V~~a~-------sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~L 101 (632)
.+.+|++|--| |...+.|+.+-++.+..+..-. -+.+|++.++... +|+||+|.-=--.---+|.+++
T Consensus 127 ~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~--~DvvIvDTAGRl~ide~Lm~El 204 (451)
T COG0541 127 KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEG--YDVVIVDTAGRLHIDEELMDEL 204 (451)
T ss_pred cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcC--CCEEEEeCCCcccccHHHHHHH
Confidence 46789988877 5556666666666554443222 2345666666654 9999999732211112344444
Q ss_pred h-----ccCCCcEEEEeccCCH--HHHHHHH--hcCCCEEEe
Q 006775 102 G-----LEMDLPVIMMSADGRV--SAVMRGI--RHGACDYLI 134 (632)
Q Consensus 102 r-----~~~~iPIIvLSa~~d~--e~~~eAl--~~GA~DYL~ 134 (632)
+ .+|+=-++++-+-... ....++| ..|..+.+.
T Consensus 205 ~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIl 246 (451)
T COG0541 205 KEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVIL 246 (451)
T ss_pred HHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEE
Confidence 3 1333333333332222 2334555 456666654
No 248
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=37.40 E-value=2.4e+02 Score=26.33 Aligned_cols=56 Identities=18% Similarity=0.019 Sum_probs=39.7
Q ss_pred CceEEEEecCCCCCCH-------HHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEe
Q 006775 79 CFDVVLSDVHMPDMDG-------FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 79 ~pDLVILDi~MPdmDG-------leLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
..|.+.++-..+...+ ...+..++....+||+...+-...+.+.++++.||+.+..
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 3788888776664321 2344455556788999888777778888999999987753
No 249
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=37.14 E-value=3.1e+02 Score=28.55 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=42.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 80 pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.|++++=.. .+.-|+.+++.+. ..+|+|.. .... ..+.+..|..+|+.+|-+.+++.+.+..++.
T Consensus 271 ~d~~v~ps~-~E~~~~~~~EAma--~g~PvI~s-~~~~---~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 271 ADLFLLPSE-KESFGLAALEAMA--CGVPVVAS-NAGG---IPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred cCEEEeCCC-cCCCccHHHHHHH--cCCCEEEe-CCCC---chhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 466655332 2334566666653 46788763 3222 3456777889999999999999988887763
No 250
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=37.04 E-value=1e+02 Score=31.22 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=44.6
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCC
Q 006775 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (632)
Q Consensus 60 V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~ 138 (632)
|....+.+++++.++... .-.+=++++.+-.-+.++.++.++. .+++ +|=.-.--+.+.+.+++++||. |+.-|.-
T Consensus 13 Vir~~~~~~a~~~~~al~-~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~~aGA~-FivSP~~ 89 (196)
T PF01081_consen 13 VIRGDDPEDAVPIAEALI-EGGIRAIEITLRTPNALEAIEALRKEFPDL-LVGAGTVLTAEQAEAAIAAGAQ-FIVSPGF 89 (196)
T ss_dssp EETTSSGGGHHHHHHHHH-HTT--EEEEETTSTTHHHHHHHHHHHHTTS-EEEEES--SHHHHHHHHHHT-S-EEEESS-
T ss_pred EEEcCCHHHHHHHHHHHH-HCCCCEEEEecCCccHHHHHHHHHHHCCCC-eeEEEeccCHHHHHHHHHcCCC-EEECCCC
Confidence 344445555555443210 0123356666666778999998864 3442 3334445577889999999998 6666744
Q ss_pred HHHHHH
Q 006775 139 EEELKN 144 (632)
Q Consensus 139 ~eeL~~ 144 (632)
.+++.+
T Consensus 90 ~~~v~~ 95 (196)
T PF01081_consen 90 DPEVIE 95 (196)
T ss_dssp -HHHHH
T ss_pred CHHHHH
Confidence 444443
No 251
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.78 E-value=1.9e+02 Score=30.88 Aligned_cols=90 Identities=17% Similarity=0.041 Sum_probs=55.9
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC---ceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006775 36 VLVVDDDITCLRILEQMLRR----CL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 36 VLIVDDd~~~r~~L~~lL~~----~g---y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iP 108 (632)
|||-|.|-...-.+...++. .. ...+.+.+.+++.+.+.. .+|+|++|-. +--++-+.+.......
T Consensus 167 vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~---gaDiI~LDn~----s~e~l~~av~~~~~~~ 239 (281)
T PRK06106 167 VLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALEL---GVDAVLLDNM----TPDTLREAVAIVAGRA 239 (281)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHc---CCCEEEeCCC----CHHHHHHHHHHhCCCc
Confidence 66666664444334444432 22 134688999999999854 4899999943 3233333333222222
Q ss_pred EEEEeccCCHHHHHHHHhcCCCEE
Q 006775 109 VIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 109 IIvLSa~~d~e~~~eAl~~GA~DY 132 (632)
++..|+.-+.+.+.+..+.|+|-.
T Consensus 240 ~leaSGGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 240 ITEASGRITPETAPAIAASGVDLI 263 (281)
T ss_pred eEEEECCCCHHHHHHHHhcCCCEE
Confidence 377788888888888888998754
No 252
>PLN02591 tryptophan synthase
Probab=36.61 E-value=5.2e+02 Score=27.07 Aligned_cols=100 Identities=12% Similarity=0.025 Sum_probs=62.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEE--CCH-HHHHHHHHHcCCCceEEEE-ec-CCCC------CCHHHHHHHHhc
Q 006775 35 RVLVVDDDITCLRILEQMLRRCLYNVTTC--SQA-AVALDILRERKGCFDVVLS-DV-HMPD------MDGFKLLEHIGL 103 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a--~sg-~eALe~L~e~~~~pDLVIL-Di-~MPd------mDGleLl~~Lr~ 103 (632)
-|+|.|-...-...+...+++.+...+.+ .+. ++=++.+.+.. .+.|-+ -. ...+ .+-.++++++|+
T Consensus 109 GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~--~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 109 GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS--EGFVYLVSSTGVTGARASVSGRVESLLQELKE 186 (250)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC--CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh
Confidence 36777766666777777777777654432 222 33344444433 233321 21 1111 123456778887
Q ss_pred cCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCC
Q 006775 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 104 ~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
..++||++=.+-.+.+.+.++.++|||+.+.-.
T Consensus 187 ~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 187 VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 778999987777888899999999999999874
No 253
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=36.51 E-value=1.8e+02 Score=34.25 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=51.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEEC-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~-sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~-~~~iPII 110 (632)
+..++++|.|+...+.++ +.++.+...+ +-.+.++...- .+.|++++-..-+ .+-..++..+|+ .++++||
T Consensus 423 g~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~agi--~~A~~vv~~~~d~-~~n~~i~~~~r~~~p~~~Ii 495 (601)
T PRK03659 423 KMRITVLERDISAVNLMR----KYGYKVYYGDATQLELLRAAGA--EKAEAIVITCNEP-EDTMKIVELCQQHFPHLHIL 495 (601)
T ss_pred CCCEEEEECCHHHHHHHH----hCCCeEEEeeCCCHHHHHhcCC--ccCCEEEEEeCCH-HHHHHHHHHHHHHCCCCeEE
Confidence 456777777766544332 3455544332 12233333222 2366666654322 234455566653 5788888
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 111 MMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+.+. +.+...+..+.||+..+.-
T Consensus 496 aRa~--~~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 496 ARAR--GRVEAHELLQAGVTQFSRE 518 (601)
T ss_pred EEeC--CHHHHHHHHhCCCCEEEcc
Confidence 8764 4455667778999977654
No 254
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.40 E-value=2.8e+02 Score=29.86 Aligned_cols=91 Identities=11% Similarity=0.061 Sum_probs=58.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CCc---eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006775 35 RVLVVDDDITCLRILEQMLRR----CLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~----~gy---~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~i 107 (632)
-|||-|.|-...-.+...++. ..+ ..+.+.+.+++.+.+.. .+|+|++|=.-| .+--++++.++ .-
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDnmsp-e~l~~av~~~~---~~ 241 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDNMSL-EQIEQAITLIA---GR 241 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECCCCH-HHHHHHHHHhc---Cc
Confidence 488888886655445554443 232 23578999999998864 489999994322 22233333333 22
Q ss_pred cEEEEeccCCHHHHHHHHhcCCCEE
Q 006775 108 PVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 108 PIIvLSa~~d~e~~~eAl~~GA~DY 132 (632)
.++-.|+.-+.+.+.+....|+|-.
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 3566777778888888888898743
No 255
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=36.39 E-value=1.5e+02 Score=28.98 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCCCC-------HHHHHHHHhcc-----CCCcEEEEeccCCHHHHHHHHhcCCCEE
Q 006775 65 QAAVALDILRERKGCFDVVLSDVHMPDMD-------GFKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~MPdmD-------GleLl~~Lr~~-----~~iPIIvLSa~~d~e~~~eAl~~GA~DY 132 (632)
+..+.++.+.. .+|.++++-.-|+.. +++.+++++.. +.+||++..+ -..+.+.++++.|++.+
T Consensus 115 t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GG-I~~env~~l~~~gad~i 190 (210)
T TIGR01163 115 TPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGG-VNDDNARELAEAGADIL 190 (210)
T ss_pred CCHHHHHHHHh---hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECC-cCHHHHHHHHHcCCCEE
Confidence 44555554432 257777765444333 33444444321 2356655444 35677888889999988
Q ss_pred EeCC
Q 006775 133 LIKP 136 (632)
Q Consensus 133 L~KP 136 (632)
+.-.
T Consensus 191 ivgs 194 (210)
T TIGR01163 191 VAGS 194 (210)
T ss_pred EECh
Confidence 6653
No 256
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=36.34 E-value=46 Score=32.77 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=47.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecC--CCCCC--HHHHHHHHhccCCCcEEE
Q 006775 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMD--GFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 36 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~--MPdmD--GleLl~~Lr~~~~iPIIv 111 (632)
|||||.....-..|..+|+..++++....+..--++.+... .||.||+.=. -|..+ -..+++.+ ...+||+-
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iilsgGP~~~~~~~~~~~~i~~~--~~~~PiLG 77 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQL--APSHLVISPGPCTPNEAGISLAVIRHF--ADKLPILG 77 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEcCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 89999999999999999999888887766543222334333 3787777421 11122 23344443 34688887
Q ss_pred Ee
Q 006775 112 MS 113 (632)
Q Consensus 112 LS 113 (632)
+.
T Consensus 78 IC 79 (191)
T PRK06774 78 VC 79 (191)
T ss_pred EC
Confidence 75
No 257
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=36.15 E-value=4e+02 Score=28.28 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=43.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 80 pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
.|++++--.. +.-|+-+++.+. ..+|||..-..+. ..+.+..|.++++..|-+.++|.+.+..++..
T Consensus 258 ~d~~v~~s~~-Egf~~~~lEAma--~G~Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 258 VSALLLTSKF-EGFPMTLLEAMS--YGIPCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISG 324 (359)
T ss_pred CcEEEECCcc-cCcChHHHHHHH--cCCCEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhC
Confidence 3555542221 223566666653 4678875321233 33566778999999999999999999988754
No 258
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=35.83 E-value=2.7e+02 Score=30.48 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=42.4
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCceEEEEC---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHH
Q 006775 34 LRVLVVDDDITCL-----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (632)
Q Consensus 34 lrVLIVDDd~~~r-----~~L~~lL~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~ 99 (632)
-|+|||-|..... +.+...|+..++++..+. +..++.+.+++.. +|+||- +.+..-+++.+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFE--PDWIIA---LGGGSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCccHHHHHH
Confidence 4789998876544 567788877676665543 2456677777654 898875 45666677666
Q ss_pred HH
Q 006775 100 HI 101 (632)
Q Consensus 100 ~L 101 (632)
.+
T Consensus 99 ~i 100 (375)
T cd08179 99 AM 100 (375)
T ss_pred HH
Confidence 65
No 259
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=35.79 E-value=4.6e+02 Score=26.21 Aligned_cols=68 Identities=12% Similarity=0.221 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEe
Q 006775 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 65 sg~eALe~L~e~~~~pD-LVILDi~MPdm---DGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+..+..+.+.+.. ++ +++.|+...+. .-++++++++....+|||.-.+-.+.+.+.++++.|+++++.
T Consensus 147 ~~~~~~~~~~~~g--a~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEELG--VKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHHcC--CCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 3445555555432 44 56677644321 237888888766789999988888888888999999999765
No 260
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=35.62 E-value=3e+02 Score=27.43 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=44.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEe--CCCCHHHHHHHHHHH
Q 006775 82 VVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI--KPIREEELKNIWQHV 149 (632)
Q Consensus 82 LVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~--KP~~~eeL~~~L~~v 149 (632)
|-++|...--...++.++.++...++||++...-.+...+..++++||+..+. .-+..+++...++..
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 34444444434567788888766789999765445555788899999999873 224445555555544
No 261
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=35.57 E-value=6.3e+02 Score=27.73 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=62.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCc--eEEEE--CCHHHHHHHHHHcCCCceEEEEecCCC---CCC--HHHHHHHHhcc
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLY--NVTTC--SQAAVALDILRERKGCFDVVLSDVHMP---DMD--GFKLLEHIGLE 104 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a--~sg~eALe~L~e~~~~pDLVILDi~MP---dmD--GleLl~~Lr~~ 104 (632)
+++.|+.|.+. ++.++..++..+. .|... -+.++..+.+.. .|+.++=.... +.+ +..+++.+.
T Consensus 254 ~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma-- 326 (406)
T PRK15427 254 FRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA-- 326 (406)
T ss_pred EEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh--
Confidence 45666666543 3445555555432 23222 234455555543 57766533211 123 345666653
Q ss_pred CCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 105 ~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
..+|||.. .... ..+.+..|..+++..|-+.++|.+.+..++.
T Consensus 327 ~G~PVI~t-~~~g---~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 VGIPVVST-LHSG---IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCCEEEe-CCCC---chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 46788763 3222 3456778999999999999999999988765
No 262
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=34.91 E-value=2.5e+02 Score=30.53 Aligned_cols=98 Identities=14% Similarity=0.039 Sum_probs=57.4
Q ss_pred EEEEEeCCHHHHHHHHHHHH-------hCCc---eEEEECCHHHHHHHHHH---cCCCceEEEEecC--CCC---CCHHH
Q 006775 35 RVLVVDDDITCLRILEQMLR-------RCLY---NVTTCSQAAVALDILRE---RKGCFDVVLSDVH--MPD---MDGFK 96 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~-------~~gy---~V~~a~sg~eALe~L~e---~~~~pDLVILDi~--MPd---mDGle 96 (632)
-|||-|.|-...-.+...++ ...+ ..+.+.+.+++.+.+.. .+..+|+|++|=. -|+ .+--+
T Consensus 172 ~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~ 251 (308)
T PLN02716 172 MVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSM 251 (308)
T ss_pred eEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHH
Confidence 37777777554433333322 2222 34578899999998861 1124899999953 121 13333
Q ss_pred HHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEE
Q 006775 97 LLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 97 Ll~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DY 132 (632)
+.+.++.......+-.|+.-..+.+.+....|+|-.
T Consensus 252 l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 252 LKEAVELINGRFETEASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred HHHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 434333222233466788788888888888898743
No 263
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=34.66 E-value=89 Score=32.75 Aligned_cols=80 Identities=24% Similarity=0.256 Sum_probs=49.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEEC-------CHHHHHHHHHHcCCCceEEEEecCCCCCCHH-----------
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHMPDMDGF----------- 95 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~-------sg~eALe~L~e~~~~pDLVILDi~MPdmDGl----------- 95 (632)
|||||+...-.+-..|...|...++++.... +.++..+.+.+.. ||+||--.-+.+.+..
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~--pd~Vin~aa~~~~~~ce~~p~~a~~iN 78 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFK--PDVVINCAAYTNVDACEKNPEEAYAIN 78 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE------HHHHHHSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhC--CCeEeccceeecHHhhhhChhhhHHHh
Confidence 7999999999999999999998888887653 5555566666654 9988865544332211
Q ss_pred ----HHHHHHhccCCCcEEEEecc
Q 006775 96 ----KLLEHIGLEMDLPVIMMSAD 115 (632)
Q Consensus 96 ----eLl~~Lr~~~~iPIIvLSa~ 115 (632)
..+.++-....+++|.+|+.
T Consensus 79 ~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 79 VDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp THHHHHHHHHHHHCT-EEEEEEEG
T ss_pred hHHHHHHHHHHHHcCCcEEEeecc
Confidence 11111112457899998874
No 264
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=34.42 E-value=1.9e+02 Score=29.93 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=60.2
Q ss_pred EEeCCHHHHHHHHHHHHhCCceEEE-----EC--CHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhccC-CC
Q 006775 38 VVDDDITCLRILEQMLRRCLYNVTT-----CS--QAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLEM-DL 107 (632)
Q Consensus 38 IVDDd~~~r~~L~~lL~~~gy~V~~-----a~--sg~eALe~L~e~~~~pDLVILDi~MPdm--DGleLl~~Lr~~~-~i 107 (632)
+..|.....+.++.+- ..+..|.. .. +..+..+.+.+. ..|.|.+|...++. -.++.+++++... .+
T Consensus 116 Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~a--Gad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~i 192 (231)
T TIGR00736 116 LLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVDD--GFDGIHVDAMYPGKPYADMDLLKILSEEFNDK 192 (231)
T ss_pred hcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHHc--CCCEEEEeeCCCCCchhhHHHHHHHHHhcCCC
Confidence 4445555555555554 33333321 11 122333344443 48989999766654 3588889887665 59
Q ss_pred cEEEEeccCCHHHHHHHHhcCCCEEEe
Q 006775 108 PVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 108 PIIvLSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
|||..-+-.+.+.+.+.+++||+....
T Consensus 193 pIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 193 IIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred cEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 999888888889999999999998754
No 265
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=34.30 E-value=2.6e+02 Score=30.74 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=41.1
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHHhCCceEEEEC---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHH
Q 006775 34 LRVLVVDDDITC-----LRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (632)
Q Consensus 34 lrVLIVDDd~~~-----r~~L~~lL~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~ 99 (632)
-|+|||-|.... .+.+...|+..++++..+. +..++++.+++.. +|+||- +.+..-+++.+
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~aK 103 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEK--VDFILA---VGGGSVIDSAK 103 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCChHHHHHHH
Confidence 589988776443 3567788887777665543 3446667776654 898774 45656666666
Q ss_pred HH
Q 006775 100 HI 101 (632)
Q Consensus 100 ~L 101 (632)
.+
T Consensus 104 ~i 105 (382)
T cd08187 104 AI 105 (382)
T ss_pred HH
Confidence 55
No 266
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=34.03 E-value=4.1e+02 Score=26.26 Aligned_cols=68 Identities=19% Similarity=0.102 Sum_probs=43.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCce--E-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006775 35 RVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~~gy~--V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr 102 (632)
+|..||.++...+.++..++..+.. + ....+..+++..+......+|+|++|-=.....-.++++.+.
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~ 144 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCE 144 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHH
Confidence 7999999999999999988876543 2 345555555544322222379999996443333445566553
No 267
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=33.80 E-value=4.8e+02 Score=25.84 Aligned_cols=108 Identities=16% Similarity=0.163 Sum_probs=60.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCc--eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPII 110 (632)
.++++|+.+.+.. ..+...+...+. .+......++..+.+.. .|+++.-... +.-|..+++.+. ..+|||
T Consensus 209 ~~~l~i~G~~~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~-e~~~~~~~Ea~a--~G~Pvi 280 (348)
T cd03820 209 DWKLRIVGDGPER-EALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRF-EGFPMVLLEAMA--FGLPVI 280 (348)
T ss_pred CeEEEEEeCCCCH-HHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCccc-cccCHHHHHHHH--cCCCEE
Confidence 3556666654332 233333333322 23333333444444432 5777765444 223566777663 467887
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
........ .+....+..+++.++.+.+++.+.+.+++.
T Consensus 281 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 281 SFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred EecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 54322222 234456678899999999999999998864
No 268
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=33.55 E-value=3.7e+02 Score=29.83 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=45.1
Q ss_pred ceEEEEecCCCCCCHHH-HHHHHhccCCCcEEEEec-cCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 80 FDVVLSDVHMPDMDGFK-LLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 80 pDLVILDi~MPdmDGle-Ll~~Lr~~~~iPIIvLSa-~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.+.+|++..-+..=-+| ++..+. .....||.... ..+......+++.|+++.+.+|-++.++++....+-+
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~-~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQ-GSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhc-CCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 56666665433322233 344442 24455555443 3455667788899999999999999999887766543
No 269
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=33.45 E-value=97 Score=29.48 Aligned_cols=53 Identities=26% Similarity=0.304 Sum_probs=28.2
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCceEEEEC---CHHHH----HHHHHHcCCCceEEEEec
Q 006775 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTCS---QAAVA----LDILRERKGCFDVVLSDV 87 (632)
Q Consensus 33 glrVLIVDDd~~~---r~~L~~lL~~~gy~V~~a~---sg~eA----Le~L~e~~~~pDLVILDi 87 (632)
+.+|++||-|..- .+.+.......+..+.... +..+. +..+.. ..+|+||+|.
T Consensus 28 g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~viiDt 90 (173)
T cd03115 28 GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE--ENFDVVIVDT 90 (173)
T ss_pred CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 5789999977532 2233333444454544432 33322 222222 3589999997
No 270
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=33.45 E-value=2.2e+02 Score=28.99 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=51.4
Q ss_pred ECCHHHHHHHHHHcCCCce-EEEEecCCCC---CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 63 CSQAAVALDILRERKGCFD-VVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 63 a~sg~eALe~L~e~~~~pD-LVILDi~MPd---mDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
..+..+..+.+.+.. +| ++++|+.-.+ ..-++++++++....+||++--+-.+.+.+.+++..|++..+.=
T Consensus 26 ~~d~~~~a~~~~~~G--~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 26 AGDPVELAKRYNEQG--ADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHHHHHHHHCC--CCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 336667777776543 44 8888886421 12367888887767799999888888999999999998876543
No 271
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=33.24 E-value=57 Score=34.81 Aligned_cols=54 Identities=22% Similarity=0.350 Sum_probs=38.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--c---eE-EEECCHHHHHHHHHHcCCCceEEEEecCCC
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCL--Y---NV-TTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~g--y---~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MP 90 (632)
-+|.+||=|+.+.+.-++.|.... . .+ ....+ +.+.+++....+|+||+|..=|
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D---g~~~v~~~~~~fDvIi~D~tdp 160 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD---GVEFLRDCEEKFDVIIVDSTDP 160 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc---HHHHHHhCCCcCCEEEEcCCCC
Confidence 379999999999999999887542 1 12 23444 4555555554699999999777
No 272
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=32.87 E-value=3.2e+02 Score=28.81 Aligned_cols=115 Identities=21% Similarity=0.215 Sum_probs=71.8
Q ss_pred ccEEEEEeCCHHH----HHH--HHHHHHhCCceEEEECCHH--HHHHHHHHcCCCceEEEEecCCCCCCHH-----HHHH
Q 006775 33 GLRVLVVDDDITC----LRI--LEQMLRRCLYNVTTCSQAA--VALDILRERKGCFDVVLSDVHMPDMDGF-----KLLE 99 (632)
Q Consensus 33 glrVLIVDDd~~~----r~~--L~~lL~~~gy~V~~a~sg~--eALe~L~e~~~~pDLVILDi~MPdmDGl-----eLl~ 99 (632)
.+|+=|+-|+... .+. -.+.|-+.||.|....+.+ -|.+ |++.. -..++-+--|-.+|. ..++
T Consensus 100 wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arr-Lee~G---caavMPl~aPIGSg~G~~n~~~l~ 175 (262)
T COG2022 100 WIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARR-LEEAG---CAAVMPLGAPIGSGLGLQNPYNLE 175 (262)
T ss_pred eEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHH-HHhcC---ceEeccccccccCCcCcCCHHHHH
Confidence 4677677665322 222 2344556699987554433 3333 33322 234555555544443 4566
Q ss_pred HHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCC-----CCHHHHHHHHHHHHH
Q 006775 100 HIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP-----IREEELKNIWQHVVR 151 (632)
Q Consensus 100 ~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP-----~~~eeL~~~L~~vlr 151 (632)
.|+.+.++|||+=.+-.....+..+++.|++..|.-. -++-.+.+++..++.
T Consensus 176 iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 176 IIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred HHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 6667779999999999999999999999999998754 345555566655553
No 273
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=32.65 E-value=5.3e+02 Score=28.62 Aligned_cols=78 Identities=17% Similarity=0.072 Sum_probs=51.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCce-E-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH-HhccCCCcEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH-IGLEMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~-V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~-Lr~~~~iPII 110 (632)
.+|..+|-++...+.++..++..+.. + ....+..+.+.. ...||+|++|- | ..+.++++. ++....-.+|
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~----~~~fD~V~lDP--~-Gs~~~~l~~al~~~~~~gil 154 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE----ERKFDVVDIDP--F-GSPAPFLDSAIRSVKRGGLL 154 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh----cCCCCEEEECC--C-CCcHHHHHHHHHHhcCCCEE
Confidence 47999999999999999888765543 2 344455444322 23599999995 4 344567666 5544445788
Q ss_pred EEeccCCH
Q 006775 111 MMSADGRV 118 (632)
Q Consensus 111 vLSa~~d~ 118 (632)
.+|+.+..
T Consensus 155 yvSAtD~~ 162 (382)
T PRK04338 155 CVTATDTA 162 (382)
T ss_pred EEEecCch
Confidence 88876543
No 274
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=32.62 E-value=1.2e+02 Score=29.09 Aligned_cols=52 Identities=23% Similarity=0.174 Sum_probs=34.9
Q ss_pred CCccEEEEEeCCHHH---------HHHHHHHHHhC-CceEEEECCHHHHHHHHHHcCCCceEEEE
Q 006775 31 PAGLRVLVVDDDITC---------LRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLS 85 (632)
Q Consensus 31 p~glrVLIVDDd~~~---------r~~L~~lL~~~-gy~V~~a~sg~eALe~L~e~~~~pDLVIL 85 (632)
...++|.|||.|... .+.+.+.|... .+.+. ..+.++|.+.++..+ ++.+|+
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~-~~~~~ea~~~l~~g~--~~~~iv 102 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWH-FVSAKEAEKGLADGK--YYMVIT 102 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceE-EcCHHHHHHHhHcCc--EEEEEE
Confidence 457899999999754 34555555543 34443 348899999998754 776654
No 275
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=32.51 E-value=4e+02 Score=26.02 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=36.5
Q ss_pred CHHHHHHHHhccCCCcEEE-EeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHH
Q 006775 93 DGFKLLEHIGLEMDLPVIM-MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (632)
Q Consensus 93 DGleLl~~Lr~~~~iPIIv-LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L 146 (632)
-+++.+++|+.....|+.+ +...+....+..+.++|++..+.-....++....+
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~ 97 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLL 97 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHH
Confidence 4889999998656667533 44445566777888999998777655444444444
No 276
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.49 E-value=5.1e+02 Score=28.96 Aligned_cols=103 Identities=16% Similarity=0.057 Sum_probs=58.0
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCC-CCCHHH---HHHHHhc-
Q 006775 32 AGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFK---LLEHIGL- 103 (632)
Q Consensus 32 ~glrVLIVDDd~~~---r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MP-dmDGle---Ll~~Lr~- 103 (632)
.+.+|.+|+-|..- .+.++.+.+..+..+..+.+..+....+... ..+|+||+|.--- ..+... +.+.+..
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSPKDFMKLAEMKELLNAC 283 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCccCHHHHHHHHHHHHhc
Confidence 35689998888632 2234444444567777777777766666554 3699999997321 123332 2222322
Q ss_pred cCC-CcEEEEeccCCHHHHHHHHh----cCCCEEE-eC
Q 006775 104 EMD-LPVIMMSADGRVSAVMRGIR----HGACDYL-IK 135 (632)
Q Consensus 104 ~~~-iPIIvLSa~~d~e~~~eAl~----~GA~DYL-~K 135 (632)
.+. -.++++++........+.+. .|.+.++ +|
T Consensus 284 ~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TK 321 (388)
T PRK12723 284 GRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTK 321 (388)
T ss_pred CCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEe
Confidence 223 35677777766655555442 3455543 44
No 277
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=32.18 E-value=1.5e+02 Score=28.22 Aligned_cols=53 Identities=28% Similarity=0.295 Sum_probs=43.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCceEEEEC----CHHHHHHHHHHcCCCceEEEEecCCCC
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS----QAAVALDILRERKGCFDVVLSDVHMPD 91 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~----sg~eALe~L~e~~~~pDLVILDi~MPd 91 (632)
.+.+|+|+.......+-+..+|.+.+..|..+. +.++++ + .-|+|++-..-+.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v---~----~ADIVvsAtg~~~ 83 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKV---H----DADVVVVGSPKPE 83 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHH---h----hCCEEEEecCCCC
Confidence 567999999999999999999999999999888 444433 2 2699999886663
No 278
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.07 E-value=5.4e+02 Score=26.43 Aligned_cols=89 Identities=6% Similarity=-0.029 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCceEEEECCH---HHHHHHHHHcCCCceEEEEecCCCCC------CHHHHHHHHhccC-CCcEEEEec
Q 006775 45 CLRILEQMLRRCLYNVTTCSQA---AVALDILRERKGCFDVVLSDVHMPDM------DGFKLLEHIGLEM-DLPVIMMSA 114 (632)
Q Consensus 45 ~r~~L~~lL~~~gy~V~~a~sg---~eALe~L~e~~~~pDLVILDi~MPdm------DGleLl~~Lr~~~-~iPIIvLSa 114 (632)
....+...+++.|..+..+-+. .+.++.+.... ..++++ -..|+. +-.+.++++|... ..||++=.+
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~--~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gG 193 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS--PLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFG 193 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC--CCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 3445556667777665443332 33444333332 566666 445542 2234556665433 467655444
Q ss_pred cCCHHHHHHHHhcCCCEEEeCC
Q 006775 115 DGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 115 ~~d~e~~~eAl~~GA~DYL~KP 136 (632)
-.+.+.+.++.++||+.++.-.
T Consensus 194 I~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 194 LDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred cCCHHHHHHHHHcCCCEEEECH
Confidence 4477888888899999998864
No 279
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=31.56 E-value=4.5e+02 Score=26.74 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=59.9
Q ss_pred ccEEEEEeCCH----HHHHHHHHHHHhCC-ceEEEECCHHHHHHHHHHcCCCceEEEEecC------CCCCCHHHHHHHH
Q 006775 33 GLRVLVVDDDI----TCLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEHI 101 (632)
Q Consensus 33 glrVLIVDDd~----~~r~~L~~lL~~~g-y~V~~a~sg~eALe~L~e~~~~pDLVILDi~------MPdmDGleLl~~L 101 (632)
|..|+-+|--. .....+-..++..+ .-..-+++.+|++...+. .+|+|=.=+. ..+..-++|+++|
T Consensus 64 GadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~l 140 (192)
T PF04131_consen 64 GADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVREL 140 (192)
T ss_dssp T-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHHH
Confidence 44566676432 22333333344433 233478899999988753 3898765431 1123468999999
Q ss_pred hccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCC
Q 006775 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 102 r~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
... .+|||.=-.....+.+.+++++||+..+.=.
T Consensus 141 ~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 141 VQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVGS 174 (192)
T ss_dssp HHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-H
T ss_pred HhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEECc
Confidence 754 8898887777889999999999999987754
No 280
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=31.45 E-value=4.7e+02 Score=28.12 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHH
Q 006775 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 145 (632)
Q Consensus 66 g~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~ 145 (632)
.++..+++.. .|+.++= ..++.-|+.+++.+. ..+|||. |... ...+.+..|.++++..|.+.++|.+.
T Consensus 291 ~~~~~~~l~~----adv~v~~-s~~e~~~~~llEAmA--~G~PVIa-s~~~---g~~e~i~~~~~G~lv~~~d~~~la~~ 359 (396)
T cd03818 291 YDQYLALLQV----SDVHVYL-TYPFVLSWSLLEAMA--CGCLVVG-SDTA---PVREVITDGENGLLVDFFDPDALAAA 359 (396)
T ss_pred HHHHHHHHHh----CcEEEEc-CcccccchHHHHHHH--CCCCEEE-cCCC---CchhhcccCCceEEcCCCCHHHHHHH
Confidence 3455555543 4655542 234445666777663 4678876 3322 23455677889999999999999999
Q ss_pred HHHHHH
Q 006775 146 WQHVVR 151 (632)
Q Consensus 146 L~~vlr 151 (632)
+..++.
T Consensus 360 i~~ll~ 365 (396)
T cd03818 360 VIELLD 365 (396)
T ss_pred HHHHHh
Confidence 988875
No 281
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=31.40 E-value=3.7e+02 Score=28.06 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=61.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLS 113 (632)
.+++|+.+.+.. +.++..+ .....+.-.-+.++..+++.. .|++++-.. +.-|+-+++.+. ..+|||...
T Consensus 222 ~~l~ivG~g~~~-~~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama--~G~Pvi~~~ 291 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA--SGTPVIAYG 291 (351)
T ss_pred CcEEEEECChhH-HHHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH--cCCCEEEeC
Confidence 567777776543 2333311 112233333355556666653 577665443 334566666653 467888753
Q ss_pred ccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 114 a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
. +. ..+.+..|..+++..|-+.++|.+.+..++.
T Consensus 292 ~-~~---~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~ 325 (351)
T cd03804 292 K-GG---ALETVIDGVTGILFEEQTVESLAAAVERFEK 325 (351)
T ss_pred C-CC---CcceeeCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 3 22 2344556778999999999999999988765
No 282
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=31.18 E-value=4e+02 Score=28.14 Aligned_cols=97 Identities=19% Similarity=0.150 Sum_probs=62.9
Q ss_pred HHHHHHHhCCceEEEECC--HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCcEEEEeccCCHHHHH
Q 006775 48 ILEQMLRRCLYNVTTCSQ--AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPVIMMSADGRVSAVM 122 (632)
Q Consensus 48 ~L~~lL~~~gy~V~~a~s--g~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~---~~~iPIIvLSa~~d~e~~~ 122 (632)
.++..|+.....+..... ..-..+++... .||.+++|..=...|.-.++..|+. .+..||| .-...+...+.
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~a--GfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvV-R~p~g~~~~Ik 83 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILATA--GFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVV-RPPVGDPVMIK 83 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHhc--CCCEEEecccccCccHHHHHHHHHHhhccCCCCee-eCCCCCHHHHH
Confidence 456667654444433222 22334555443 5999999998777888888888862 3445555 44557788899
Q ss_pred HHHhcCCCEEEeCCC-CHHHHHHHHH
Q 006775 123 RGIRHGACDYLIKPI-REEELKNIWQ 147 (632)
Q Consensus 123 eAl~~GA~DYL~KP~-~~eeL~~~L~ 147 (632)
++++.||...|.-=+ +.++-+..++
T Consensus 84 q~LD~GAqtlliPmV~s~eqAr~~V~ 109 (255)
T COG3836 84 QLLDIGAQTLLIPMVDTAEQARQAVA 109 (255)
T ss_pred HHHccccceeeeeccCCHHHHHHHHH
Confidence 999999999888545 4455544444
No 283
>PLN02476 O-methyltransferase
Probab=31.16 E-value=2.2e+02 Score=30.32 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=41.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCce--E-EEECCHHHHHHHHHHc--CCCceEEEEecC
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRER--KGCFDVVLSDVH 88 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~--V-~~a~sg~eALe~L~e~--~~~pDLVILDi~ 88 (632)
.-+|.-+|-++...+..+..++..|+. + ....++.+.|..+... ...||+||+|..
T Consensus 143 ~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 143 SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 447999999999999999999988764 3 2456666766655321 236999999974
No 284
>PRK15201 fimbriae regulatory protein FimW; Provisional
Probab=30.91 E-value=65 Score=32.47 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=52.6
Q ss_pred CCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhccccccccccCCccccccCCCChhhHHHHHHh
Q 006775 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSV 185 (632)
Q Consensus 106 ~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~~~~~~~~~~~~le~~~~~~ls~~Eie~l~~v 185 (632)
..+||+....+......+- -.-..-|+...-+.+++.....-+++++.-...-.. ..........++.+|.+++..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~-~~~~~~~iyr~d~v~~i~~k~~~il~~~al~~~~~~--~~~~~~~~~~LSpRErEVLrLL 145 (198)
T PRK15201 69 QLRVIICNKCDKEKLMFRP-CLYMLPHIYREDDVEEITRKMILILHKRALRHSVPS--GICHYCTTRHFSVTERHLLKLI 145 (198)
T ss_pred eeEEEEeccccchhhhhch-hHhhcchhhccccHHHHHHHHHHHHHHHHHHhhCCc--hhccccCCCCCCHHHHHHHHHH
Confidence 3456655444333322221 112233455555566665444444443221111000 0011222345899999999999
Q ss_pred hcCCchhhhhhhhhcccccc
Q 006775 186 NEGTEGTFKAQRKRISAKEE 205 (632)
Q Consensus 186 ~eG~~~~~~~~~~~is~k~~ 205 (632)
.+|.+...++....++.+++
T Consensus 146 AqGkTnKEIAe~L~IS~rTV 165 (198)
T PRK15201 146 ASGYHLSETAALLSLSEEQT 165 (198)
T ss_pred HCCCCHHHHHHHhCCCHHHH
Confidence 99999999999888887655
No 285
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=30.79 E-value=2.1e+02 Score=27.93 Aligned_cols=85 Identities=22% Similarity=0.260 Sum_probs=46.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCce---------------EEEECCHHHHHHHHHH--cCCCceEEEEec-CCCCCC
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRCLYN---------------VTTCSQAAVALDILRE--RKGCFDVVLSDV-HMPDMD 93 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~gy~---------------V~~a~sg~eALe~L~e--~~~~pDLVILDi-~MPdmD 93 (632)
+++||||+..-..+.+.+.+.|+...+. +.....+ .....+.. ....+|+||+|= +.-|-.
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~a-t~~~~~~~p~~~~~yd~II~DEcH~~Dp~ 110 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHA-TYGHFLLNPCRLKNYDVIIMDECHFTDPT 110 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHH-HHHHHHHTSSCTTS-SEEEECTTT--SHH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccH-HHHHHhcCcccccCccEEEEeccccCCHH
Confidence 5789999999999999999999875422 2222222 23333332 112489999994 333322
Q ss_pred HHHH---HHHHhccCCCcEEEEeccCC
Q 006775 94 GFKL---LEHIGLEMDLPVIMMSADGR 117 (632)
Q Consensus 94 GleL---l~~Lr~~~~iPIIvLSa~~d 117 (632)
.+.+ ++.+.......+|++|+.+-
T Consensus 111 sIA~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 111 SIAARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEEESS-T
T ss_pred HHhhheeHHHhhhccCeeEEEEeCCCC
Confidence 3332 33332334567999988653
No 286
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=30.61 E-value=66 Score=31.67 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=43.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEe--cCCCCCCHHHHHHHHhc-cCCCcEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD--VHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILD--i~MPdmDGleLl~~Lr~-~~~iPII 110 (632)
+||||||.....-..+...|++.++++..........+.+. .+|.||+- ...|+..+ .+.+.|+. ...+||+
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~----~~d~iIi~gGp~~~~~~~-~~~~~i~~~~~~~PiL 76 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVE----NFSHILISPGPDVPRAYP-QLFAMLERYHQHKSIL 76 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhc----cCCEEEECCCCCChHHhh-HHHHHHHHhcCCCCEE
Confidence 68999999988888899999998887766553221122222 36766642 11111111 22333432 2467887
Q ss_pred EEe
Q 006775 111 MMS 113 (632)
Q Consensus 111 vLS 113 (632)
-+.
T Consensus 77 GIC 79 (190)
T PRK06895 77 GVC 79 (190)
T ss_pred EEc
Confidence 765
No 287
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=30.59 E-value=3.6e+02 Score=30.12 Aligned_cols=104 Identities=14% Similarity=0.249 Sum_probs=61.3
Q ss_pred eCCHHHHHHHHHHHHhCCce----EEEE-----------------------CCHHHHHHHHHHcCCCceEEEEecCCCCC
Q 006775 40 DDDITCLRILEQMLRRCLYN----VTTC-----------------------SQAAVALDILRERKGCFDVVLSDVHMPDM 92 (632)
Q Consensus 40 DDd~~~r~~L~~lL~~~gy~----V~~a-----------------------~sg~eALe~L~e~~~~pDLVILDi~MPdm 92 (632)
+++....+.+++.++..+|. +..+ .+.++++++++.....++++.+.-=++..
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~ 289 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDED 289 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 56677777888888665443 2221 24478888776532247887777655544
Q ss_pred CHHHHHHHHhccC--CCcEEEEecc---CCHHHHHHHHhcCCCE-EEeCCCCHHHHHHHH
Q 006775 93 DGFKLLEHIGLEM--DLPVIMMSAD---GRVSAVMRGIRHGACD-YLIKPIREEELKNIW 146 (632)
Q Consensus 93 DGleLl~~Lr~~~--~iPIIvLSa~---~d~e~~~eAl~~GA~D-YL~KP~~~eeL~~~L 146 (632)
| ++-.++|+... .+|| +... .+.....++++.++.+ ++.||-..--|-.++
T Consensus 290 D-~eg~~~L~~~~g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~ 346 (408)
T cd03313 290 D-WEGWAKLTAKLGDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETI 346 (408)
T ss_pred C-HHHHHHHHHhcCCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHH
Confidence 4 55555665443 4444 3333 2567778888777655 567886544443333
No 288
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=30.47 E-value=4.6e+02 Score=32.46 Aligned_cols=127 Identities=18% Similarity=0.155 Sum_probs=70.7
Q ss_pred hhHHHHHHHcCC-CCCCCcccccccCCCCCCCccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCc
Q 006775 2 AALQRIVQSSGG-SGYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCF 80 (632)
Q Consensus 2 aI~~~lv~~mGG-~g~Gs~~~~~~~~p~~~p~glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~p 80 (632)
++.+|+++.||+ .|.-.|+...+. +.-...-+|-++-|--..++....-+-. + +
T Consensus 109 svA~RvAeel~~~~G~~VGY~iRfe--~~~s~~Trik~mTdGiLlrei~~D~~Ls-~----------------------y 163 (845)
T COG1643 109 SVAERVAEELGEKLGETVGYSIRFE--SKVSPRTRIKVMTDGILLREIQNDPLLS-G----------------------Y 163 (845)
T ss_pred HHHHHHHHHhCCCcCceeeEEEEee--ccCCCCceeEEeccHHHHHHHhhCcccc-c----------------------C
Confidence 578899999999 455556655542 2223455777787765555443222211 2 4
Q ss_pred eEEEEecCCC---CCC-HHHHHHHH-hcc-CCCcEEEEeccCCHHHHHHHHh-cC----------CCEEEeCCCCHHH-H
Q 006775 81 DVVLSDVHMP---DMD-GFKLLEHI-GLE-MDLPVIMMSADGRVSAVMRGIR-HG----------ACDYLIKPIREEE-L 142 (632)
Q Consensus 81 DLVILDi~MP---dmD-GleLl~~L-r~~-~~iPIIvLSa~~d~e~~~eAl~-~G----------A~DYL~KP~~~ee-L 142 (632)
++||+|=-=. +.| .+.+++.+ ... ++++||++|+.-+.+...+.+. +. +.-+-.++...++ +
T Consensus 164 s~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l 243 (845)
T COG1643 164 SVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYIL 243 (845)
T ss_pred CEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhH
Confidence 5555552111 112 45566664 333 3688888888887776666554 21 2233434544555 7
Q ss_pred HHHHHHHHHhh
Q 006775 143 KNIWQHVVRKR 153 (632)
Q Consensus 143 ~~~L~~vlrk~ 153 (632)
...+..+++..
T Consensus 244 ~~ai~~~v~~~ 254 (845)
T COG1643 244 LDAIVAAVDIH 254 (845)
T ss_pred HHHHHHHHHHh
Confidence 77777766544
No 289
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=30.38 E-value=66 Score=32.05 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEE
Q 006775 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 66 g~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL 133 (632)
.+.+++.++..+ ||.|=+ ||+ --..++++++....+|||.=---.+.+.+.+++++||...=
T Consensus 106 l~~~~~~i~~~~--PD~vEi---lPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVS 167 (175)
T PF04309_consen 106 LETGIKQIEQSK--PDAVEI---LPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVS 167 (175)
T ss_dssp HHHHHHHHHHHT---SEEEE---ESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEE
T ss_pred HHHHHHHHhhcC--CCEEEE---chH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEE
Confidence 345667777665 998866 888 55577888877678898864445678889999999998753
No 290
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=30.31 E-value=2.5e+02 Score=30.73 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=41.1
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCceEEEE---------CCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHH
Q 006775 34 LRVLVVDDDIT-----CLRILEQMLRRCLYNVTTC---------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (632)
Q Consensus 34 lrVLIVDDd~~-----~r~~L~~lL~~~gy~V~~a---------~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~ 99 (632)
-|+|||-|... ..+.+...|+..+.++..+ .+..++.+.+++.. +|+||- ..+..-++..+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~Iia---vGGGS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEG--CDFVVG---LGGGSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCCccHHHHHH
Confidence 48898888654 3356777777766665544 23456667777654 898874 45666677666
Q ss_pred HH
Q 006775 100 HI 101 (632)
Q Consensus 100 ~L 101 (632)
.+
T Consensus 101 ~i 102 (380)
T cd08185 101 AI 102 (380)
T ss_pred HH
Confidence 65
No 291
>PRK00811 spermidine synthase; Provisional
Probab=30.25 E-value=2.6e+02 Score=29.48 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=37.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC------CceE-EEECCHHHHHHHHHHcCCCceEEEEecCCC
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRC------LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~------gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MP 90 (632)
.-+|.+||=|+.+.+..++.+... .-.+ ....++.+.+. .....+|+||+|..-|
T Consensus 100 ~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~---~~~~~yDvIi~D~~dp 161 (283)
T PRK00811 100 VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA---ETENSFDVIIVDSTDP 161 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh---hCCCcccEEEECCCCC
Confidence 458999999999999999988642 1122 34555555443 3334699999997555
No 292
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=30.23 E-value=3.3e+02 Score=30.59 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=56.3
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCceEEEECC--HHHHHHHHHHcCCCceEEEEecC-CCCCCH--HHHHHHHhccCC
Q 006775 33 GLRVLVVDDD-ITCLRILEQMLRRCLYNVTTCSQ--AAVALDILRERKGCFDVVLSDVH-MPDMDG--FKLLEHIGLEMD 106 (632)
Q Consensus 33 glrVLIVDDd-~~~r~~L~~lL~~~gy~V~~a~s--g~eALe~L~e~~~~pDLVILDi~-MPdmDG--leLl~~Lr~~~~ 106 (632)
|=+||+.+|- .-.+..+..++.+.+.++..+.. ..+.++.+.. ...++|+++.= -|-+.- +..+.++.....
T Consensus 102 GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g 179 (396)
T COG0626 102 GDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPDIPAIARLAKAYG 179 (396)
T ss_pred CCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCcccccccHHHHHHHHHhcC
Confidence 5688888884 55677888888888999886664 4445555543 23899999852 232322 222333322233
Q ss_pred CcEEEEeccCCHHHHHHHHhcCCCEEE
Q 006775 107 LPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 107 iPIIvLSa~~d~e~~~eAl~~GA~DYL 133 (632)
.++++=..-..-...+.+++|||=++
T Consensus 180 -~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 180 -ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred -CEEEEECCcccccccChhhcCCCEEE
Confidence 33333222222345567788876544
No 293
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=30.22 E-value=5e+02 Score=27.27 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=37.4
Q ss_pred CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 93 DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 93 DGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
-|+.+++.+. ..+|||....... ..+.+..|..+|+..|-+.++|..++..++.
T Consensus 291 ~~~~~lEAma--~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~ 344 (372)
T cd04949 291 FGLSLMEALS--HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLN 344 (372)
T ss_pred cChHHHHHHh--CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHc
Confidence 3555666553 4678886432211 2344567889999999999999999988875
No 294
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=30.13 E-value=63 Score=31.89 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=46.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecC--CCCCCH--HHHHHHHhccCCCcEEE
Q 006775 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDG--FKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 36 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~--MPdmDG--leLl~~Lr~~~~iPIIv 111 (632)
|||||....+-..|..+|.+.+.++..+.+.+..++.+... .||.||+-=. -|..++ .++++.+ ...+||+-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iils~GPg~p~~~~~~~~~~~~~--~~~~PiLG 77 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDAL--KPQKIVISPGPCTPDEAGISLDVIRHY--AGRLPILG 77 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCEEEEcCCCCChHHCCccHHHHHHh--cCCCCEEE
Confidence 89999999999999999999888877666543223333332 3888887431 122222 2334433 34688877
Q ss_pred Ee
Q 006775 112 MS 113 (632)
Q Consensus 112 LS 113 (632)
+.
T Consensus 78 IC 79 (187)
T PRK08007 78 VC 79 (187)
T ss_pred EC
Confidence 65
No 295
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=30.06 E-value=5.9e+02 Score=26.06 Aligned_cols=70 Identities=19% Similarity=0.151 Sum_probs=53.3
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEE
Q 006775 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-------mDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL 133 (632)
.++.+.+++.+..+. .+|-|.+.--.|. -.|++.+++++....+|++.+-+ -+.+.+.+.++.||++.-
T Consensus 109 ~S~h~~eea~~A~~~---g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGG-i~~~nv~~v~~~Ga~gVA 184 (211)
T COG0352 109 LSTHDLEEALEAEEL---GADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGG-INLENVPEVLEAGADGVA 184 (211)
T ss_pred eecCCHHHHHHHHhc---CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcC-CCHHHHHHHHHhCCCeEE
Confidence 367788888887643 3899988765553 46899999998767799998876 456778899999999763
Q ss_pred e
Q 006775 134 I 134 (632)
Q Consensus 134 ~ 134 (632)
.
T Consensus 185 v 185 (211)
T COG0352 185 V 185 (211)
T ss_pred e
Confidence 3
No 296
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.02 E-value=4.9e+02 Score=25.77 Aligned_cols=85 Identities=11% Similarity=0.067 Sum_probs=49.4
Q ss_pred CceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCC
Q 006775 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 57 gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
-.-|....+.+++++.++..- .-.+=++.+.+.+.+..++++.++.....-.+-...--..+....|+++||+..+.--
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~ 92 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVA-AGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPH 92 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCC
Confidence 345677888888888776521 1234456666777788888888764322111101111123567788999998555533
Q ss_pred CCHHHH
Q 006775 137 IREEEL 142 (632)
Q Consensus 137 ~~~eeL 142 (632)
++.+.+
T Consensus 93 ~~~~~~ 98 (187)
T PRK07455 93 VDPELI 98 (187)
T ss_pred CCHHHH
Confidence 554443
No 297
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.82 E-value=2.7e+02 Score=31.50 Aligned_cols=84 Identities=20% Similarity=0.228 Sum_probs=41.5
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCceEEEEC-------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH
Q 006775 32 AGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 32 ~glrVLIVDDd~~~---r~~L~~lL~~~gy~V~~a~-------sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~L 101 (632)
+++++.+|--|..- .+.|+..-.+.+..+...+ -+.++++..+.. .+|+||+|..=-..--.+|.+++
T Consensus 128 kG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke--~fdvIIvDTSGRh~qe~sLfeEM 205 (483)
T KOG0780|consen 128 KGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKE--NFDVIIVDTSGRHKQEASLFEEM 205 (483)
T ss_pred cCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhc--CCcEEEEeCCCchhhhHHHHHHH
Confidence 56787766655322 2233333333344443322 233455555554 49999999854433334455544
Q ss_pred h-----ccCCCcEEEEeccCC
Q 006775 102 G-----LEMDLPVIMMSADGR 117 (632)
Q Consensus 102 r-----~~~~iPIIvLSa~~d 117 (632)
+ -.|+.-|.++-+.-.
T Consensus 206 ~~v~~ai~Pd~vi~VmDasiG 226 (483)
T KOG0780|consen 206 KQVSKAIKPDEIIFVMDASIG 226 (483)
T ss_pred HHHHhhcCCCeEEEEEecccc
Confidence 3 134444444544333
No 298
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=29.56 E-value=76 Score=31.30 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=45.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEec--CCCCCCH--HHHHHHHhccCCCcEEE
Q 006775 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV--HMPDMDG--FKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 36 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi--~MPdmDG--leLl~~Lr~~~~iPIIv 111 (632)
|||||.....-..+.+.|...++++....+....++.+... .||.||+-= .-|..++ .++++++ ...+||+-
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iilsgGpg~p~~~~~~~~~i~~~--~~~~PvLG 77 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEAL--LPLLIVISPGPCTPNEAGISLEAIRHF--AGKLPILG 77 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhc--CCCEEEEcCCCCChhhcchhHHHHHHh--ccCCCEEE
Confidence 89999999999999999998888877655332222333332 388666621 1111222 3344444 34688887
Q ss_pred Ee
Q 006775 112 MS 113 (632)
Q Consensus 112 LS 113 (632)
+.
T Consensus 78 IC 79 (188)
T TIGR00566 78 VC 79 (188)
T ss_pred EC
Confidence 75
No 299
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=29.48 E-value=1.8e+02 Score=28.43 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCC--CCCHHHHHHHHhcc-CCCcEEEE--eccCCHHHHHHHHhcCCCEEEeCCCCH
Q 006775 65 QAAVALDILRERKGCFDVVLSDVHMP--DMDGFKLLEHIGLE-MDLPVIMM--SADGRVSAVMRGIRHGACDYLIKPIRE 139 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~MP--dmDGleLl~~Lr~~-~~iPIIvL--Sa~~d~e~~~eAl~~GA~DYL~KP~~~ 139 (632)
+.++++++++..... +-.+.+.+| -..|++.++.+++. +++|+++- ...........+.++|++..+.-....
T Consensus 11 ~~~~~~~~~~~l~~~--i~~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~ 88 (202)
T cd04726 11 DLEEALELAKKVPDG--VDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP 88 (202)
T ss_pred CHHHHHHHHHHhhhc--CCEEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC
Confidence 445555555443312 223444333 23578889888754 57787763 223333345677899998776544332
Q ss_pred -HHHHHHHHH
Q 006775 140 -EELKNIWQH 148 (632)
Q Consensus 140 -eeL~~~L~~ 148 (632)
+.+...++.
T Consensus 89 ~~~~~~~i~~ 98 (202)
T cd04726 89 LSTIKKAVKA 98 (202)
T ss_pred HHHHHHHHHH
Confidence 334444443
No 300
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=29.38 E-value=2.4e+02 Score=28.80 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEe
Q 006775 64 SQAAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 64 ~sg~eALe~L~e~~~~pDLVILDi~MPdm-DG--leLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
.+..+.++.+.+.. .-.++++|+.-.++ .| +++++.++....+|+|+--+-.+.+...++.+.|+++.+.
T Consensus 147 ~~~~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 147 IDLEEFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEHHHHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cCHHHHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 45677777776653 45799999976542 33 5678888655689999988888889999999999988875
No 301
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=28.91 E-value=6.9e+02 Score=26.12 Aligned_cols=105 Identities=13% Similarity=0.107 Sum_probs=55.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--ceEEEE--CCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~g--y~V~~a--~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iP 108 (632)
.+||.||.--..........+...+ +.+..+ .+.+.|.+...+.. +.-+..| .+.+-..+++-
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~--~~~~~~~-----------~~~ll~~~~iD 69 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG--IAKAYTD-----------LEELLADPDID 69 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC--CCcccCC-----------HHHHhcCCCCC
Confidence 4677777765444444444444433 244333 34444444433322 1111111 12221223333
Q ss_pred EEEEe--ccCCHHHHHHHHhcCCCEEEeCC--CCHHHHHHHHHHHH
Q 006775 109 VIMMS--ADGRVSAVMRGIRHGACDYLIKP--IREEELKNIWQHVV 150 (632)
Q Consensus 109 IIvLS--a~~d~e~~~eAl~~GA~DYL~KP--~~~eeL~~~L~~vl 150 (632)
+|++. ...-.+.+.+|+++|..=|+-|| .+.+|..+.++.+-
T Consensus 70 ~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~ 115 (342)
T COG0673 70 AVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELAR 115 (342)
T ss_pred EEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHH
Confidence 33333 34456778899999999999999 56788876665543
No 302
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=28.83 E-value=6.9e+02 Score=26.11 Aligned_cols=38 Identities=11% Similarity=0.219 Sum_probs=32.2
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEE
Q 006775 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (632)
Q Consensus 95 leLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DY 132 (632)
+++++.++...++|||...+-.+.+.+.+++..||+..
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V 257 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAV 257 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 57778887666899999988889999999999999765
No 303
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=28.47 E-value=1.7e+02 Score=31.96 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=44.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--Cce---E-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006775 35 RVLVVDDDITCLRILEQMLRRC--LYN---V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~~--gy~---V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~ 100 (632)
.|+++|-|..+.+.=+..+... +|+ | ....++...++.+.+. ++|+||+|..=|.+.+..+..+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~--~~dVii~dssdpvgpa~~lf~~ 216 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKEN--PFDVIITDSSDPVGPACALFQK 216 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccC--CceEEEEecCCccchHHHHHHH
Confidence 4788888887777766666642 332 2 3455888877777554 4999999998888887766543
No 304
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=28.45 E-value=1.9e+02 Score=32.74 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=40.1
Q ss_pred CceEEEEecCCCC-CCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHhcCCCEEE
Q 006775 79 CFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 79 ~pDLVILDi~MPd-mDGleLl~~Lr~~-~~iPIIvLSa~~d~e~~~eAl~~GA~DYL 133 (632)
.+|+|.+|..-.. ...++.+++|+.. +++|||+ ..-.+.+.+..++++||+.+.
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 4899999984432 3467788888765 6888877 344567778889999998763
No 305
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=28.30 E-value=2.1e+02 Score=27.96 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=34.1
Q ss_pred ceEEEEecCCCCCCH-------HHHHHHHhcc-----CCCcEEEEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 80 FDVVLSDVHMPDMDG-------FKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 80 pDLVILDi~MPdmDG-------leLl~~Lr~~-----~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+|.++++-..|+.+| ++.+++++.. +.+|+++.-+- ..+.+.++++.|++.++.-
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI-~~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGI-NLETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEC
Confidence 687777765554333 3445555322 24777655443 4577888889999988764
No 306
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=28.18 E-value=3.6e+02 Score=26.70 Aligned_cols=76 Identities=12% Similarity=0.126 Sum_probs=49.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CceEEEE----C--CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 006775 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTC----S--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~lL~~~--gy~V~~a----~--sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~ 103 (632)
.+++|.++...+.+.+.+.+.|+.. +..+..+ . +.++.++.+.+. .+|+|++-+.+|...- ++.+.+.
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s--~~dil~VglG~PkQE~--~~~~~~~ 122 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS--GAGIVFVGLGCPKQEI--WMRNHRH 122 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc--CCCEEEEEcCCcHhHH--HHHHhHH
Confidence 4689999999999999999999875 3444332 1 122335566554 4999999999997553 3344433
Q ss_pred cCCCcEEE
Q 006775 104 EMDLPVIM 111 (632)
Q Consensus 104 ~~~iPIIv 111 (632)
....++++
T Consensus 123 ~~~~~v~~ 130 (177)
T TIGR00696 123 LKPDAVMI 130 (177)
T ss_pred hCCCcEEE
Confidence 33344444
No 307
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=28.05 E-value=3e+02 Score=32.57 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=51.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEEC-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~-sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr-~~~~iPII 110 (632)
++++.++|.|+...+.+++ .++.+...+ +-.+.++... -...|++++-..-++ .-..++..+| ..++++||
T Consensus 423 g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~ag--i~~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~ii 495 (621)
T PRK03562 423 GVKMTVLDHDPDHIETLRK----FGMKVFYGDATRMDLLESAG--AAKAEVLINAIDDPQ-TSLQLVELVKEHFPHLQII 495 (621)
T ss_pred CCCEEEEECCHHHHHHHHh----cCCeEEEEeCCCHHHHHhcC--CCcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEE
Confidence 4677888888765554433 466554332 1222333222 124677777653222 2345555555 35788888
Q ss_pred EEeccCCHHHHHHHHhcCCCEEE
Q 006775 111 MMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL 133 (632)
+.+. +.+...+..+.||+..+
T Consensus 496 aRa~--d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 496 ARAR--DVDHYIRLRQAGVEKPE 516 (621)
T ss_pred EEEC--CHHHHHHHHHCCCCEEe
Confidence 7664 44556666788998654
No 308
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.97 E-value=3.9e+02 Score=27.01 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHcCCCce-EEEEecCCC---CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEe
Q 006775 65 QAAVALDILRERKGCFD-VVLSDVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 65 sg~eALe~L~e~~~~pD-LVILDi~MP---dmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+..+..+.+... .++ +++.|+... ..-.+++++++.....+||++-.+-.+.+.+.+.+..|++..+.
T Consensus 150 ~~~~~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 150 TPVEAAKRFEEL--GAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVV 221 (241)
T ss_pred CHHHHHHHHHHc--CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 445555555443 255 566666322 22347888888766789999988888888888888999998754
No 309
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=27.93 E-value=8.3e+02 Score=26.71 Aligned_cols=98 Identities=11% Similarity=0.127 Sum_probs=61.9
Q ss_pred EEEEEeCC----HHHHHHHHHHHHhCCce-E--EEECCHHHHHHHHHHcCCCceEEEEecCCC-----------CCC--H
Q 006775 35 RVLVVDDD----ITCLRILEQMLRRCLYN-V--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMD--G 94 (632)
Q Consensus 35 rVLIVDDd----~~~r~~L~~lL~~~gy~-V--~~a~sg~eALe~L~e~~~~pDLVILDi~MP-----------dmD--G 94 (632)
.++++|-- ..+.+.++.+-+..... + ..+.+.+.|..+++. ..|.|.+-+.-. +.. +
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a---Gad~I~V~~G~G~~~~tr~~~g~g~~~~~ 186 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 186 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccceeeeccCCCchH
Confidence 67777762 44444555544444322 2 224577788777653 377777553111 112 3
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 95 leLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+..+..++...++|||.-.+-.....+.+|+.+||+....=
T Consensus 187 l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 187 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 44566665556789999888888899999999999987654
No 310
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=27.77 E-value=7.7e+02 Score=26.31 Aligned_cols=107 Identities=17% Similarity=0.187 Sum_probs=62.7
Q ss_pred cEEEEEeCC---H-HHHHHHHHHHHhCCc--eEEEEC--CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 006775 34 LRVLVVDDD---I-TCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (632)
Q Consensus 34 lrVLIVDDd---~-~~r~~L~~lL~~~gy--~V~~a~--sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~ 105 (632)
++++|+.+. . ...+.++.+.+..+. .|.... +.++..+++.. .|+.++-.. .+.-|+-+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~-~E~~g~~~lEAma--~ 325 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSY-NESFGLVAMEAQA--C 325 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCC-CCCcChHHHHHHH--c
Confidence 566666531 1 233445555554432 233322 33455555542 576665432 2344666777664 4
Q ss_pred CCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 106 ~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
.+|||.... +. ..+.+..|..+++..|-+.+++.+.+.+++.
T Consensus 326 G~Pvi~~~~-~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 326 GTPVVAARV-GG---LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred CCCEEEecC-CC---cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 678876443 22 2345667888999999999999999988764
No 311
>PRK10742 putative methyltransferase; Provisional
Probab=27.75 E-value=2.7e+02 Score=29.34 Aligned_cols=57 Identities=21% Similarity=0.162 Sum_probs=40.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC------Cc----eE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCC
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRC------LY----NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~------gy----~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdm 92 (632)
+.+|..||.++.+...++.-|+.. +. .+ ....+..+.+.. ....||+|.+|-.-|..
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~---~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRPQVVYLDPMFPHK 177 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh---CCCCCcEEEECCCCCCC
Confidence 568999999999999999999873 11 12 234455555543 33359999999988864
No 312
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=27.68 E-value=2.2e+02 Score=29.67 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHH
Q 006775 45 CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRG 124 (632)
Q Consensus 45 ~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eA 124 (632)
....|....++.|.......-..++++.+.+ +++-++=+--.+.+-+.|++++.. ...|||+=|+-...+.+.+|
T Consensus 57 ~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~----~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~stl~EI~~A 131 (241)
T PF03102_consen 57 QHKELFEYCKELGIDFFSTPFDEESVDFLEE----LGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMSTLEEIERA 131 (241)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-SHHHHHHHHH----HT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT--HHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEECCCCHHHHHHHHH----cCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCCCHHHHHHH
Confidence 3455666777778887766667777888865 344455555667788999999964 67899999988877766665
Q ss_pred H----hcCCCEEEe------CCCCHHHHH
Q 006775 125 I----RHGACDYLI------KPIREEELK 143 (632)
Q Consensus 125 l----~~GA~DYL~------KP~~~eeL~ 143 (632)
+ +.|..++.. -|...+++.
T Consensus 132 v~~~~~~~~~~l~llHC~s~YP~~~e~~N 160 (241)
T PF03102_consen 132 VEVLREAGNEDLVLLHCVSSYPTPPEDVN 160 (241)
T ss_dssp HHHHHHHCT--EEEEEE-SSSS--GGG--
T ss_pred HHHHHhcCCCCEEEEecCCCCCCChHHcC
Confidence 4 345555432 255555554
No 313
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=27.60 E-value=4.1e+02 Score=29.09 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=40.1
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCceEEEEC---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006775 34 LRVLVVDDDIT----CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (632)
Q Consensus 34 lrVLIVDDd~~----~r~~L~~lL~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~ 100 (632)
-|+|||-|... ..+.+...|+..+..+..+. +..++.+.+++.. +|.||- ..+..-+++.+.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGG--CDVIIA---LGGGSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHHH
Confidence 47888887643 33557777877676655442 2445666666554 898774 456666777766
Q ss_pred H
Q 006775 101 I 101 (632)
Q Consensus 101 L 101 (632)
+
T Consensus 99 i 99 (375)
T cd08194 99 I 99 (375)
T ss_pred H
Confidence 5
No 314
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.53 E-value=6.7e+02 Score=25.67 Aligned_cols=71 Identities=11% Similarity=0.062 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHcCCCceEEEEecC-CC-CC-CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCC
Q 006775 64 SQAAVALDILRERKGCFDVVLSDVH-MP-DM-DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 64 ~sg~eALe~L~e~~~~pDLVILDi~-MP-dm-DGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
.+..+..+.+.+. --.++++|+. +- +. .-+++++++.....+||++=-+-.+.+.+.+++..|++..+.-.
T Consensus 30 ~dp~~~a~~~~~~--~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGt 103 (228)
T PRK04128 30 GDPVEIALRFSEY--VDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGT 103 (228)
T ss_pred CCHHHHHHHHHHh--CCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence 3666666666542 1247788886 22 22 45889999876678899987777888889999999999877643
No 315
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=27.51 E-value=2.2e+02 Score=31.13 Aligned_cols=53 Identities=21% Similarity=0.109 Sum_probs=38.8
Q ss_pred ceEEEEecCCCCCC-HHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHhcCCCEEE
Q 006775 80 FDVVLSDVHMPDMD-GFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 80 pDLVILDi~MPdmD-GleLl~~Lr~~-~~iPIIvLSa~~d~e~~~eAl~~GA~DYL 133 (632)
+|+|.+|+-.+..+ -.+++++|+.. ++++||+= .-.+.+.+..++++|++..+
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 59999999887543 56788888754 45666652 23367788899999999765
No 316
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.37 E-value=1.7e+02 Score=33.64 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=48.7
Q ss_pred CceEEEEe-cCCCCCCHHHH-HHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 79 CFDVVLSD-VHMPDMDGFKL-LEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 79 ~pDLVILD-i~MPdmDGleL-l~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
.+-++|+| ++|-..+.++. ++.+ +.+...++++-+..+...+...+..-+..|-.+|++.+++...+++++..
T Consensus 121 ~~KV~IIDEah~Ls~~A~NALLKtL-EEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQSFNALLKTL-EEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred CCEEEEEechhhcCHHHHHHHHHHh-hcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHH
Confidence 46788887 56555555554 3444 33444444443334455566778778888999999999999988887764
No 317
>PRK01581 speE spermidine synthase; Validated
Probab=27.33 E-value=2.6e+02 Score=31.20 Aligned_cols=56 Identities=23% Similarity=0.270 Sum_probs=35.4
Q ss_pred CccEEEEEeCCHHHHHHHHHH--HH---hC---CceE-EEECCHHHHHHHHHHcCCCceEEEEecCCC
Q 006775 32 AGLRVLVVDDDITCLRILEQM--LR---RC---LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (632)
Q Consensus 32 ~glrVLIVDDd~~~r~~L~~l--L~---~~---gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MP 90 (632)
...+|.+||=|+.+.+..+.. |. .. .-.+ ..+.++.+.+. .....+|+||+|+--|
T Consensus 173 ~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~---~~~~~YDVIIvDl~DP 237 (374)
T PRK01581 173 TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS---SPSSLYDVIIIDFPDP 237 (374)
T ss_pred CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH---hcCCCccEEEEcCCCc
Confidence 345899999999988887752 21 11 1233 24566665554 3334699999997433
No 318
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=26.97 E-value=7.1e+02 Score=25.65 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=64.8
Q ss_pred HHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHH-------HHhccCCCcEEEEeccCCHH
Q 006775 47 RILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE-------HIGLEMDLPVIMMSADGRVS 119 (632)
Q Consensus 47 ~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~-------~Lr~~~~iPIIvLSa~~d~e 119 (632)
..+.+.+++.|..+..+-....-++.+.......|++|+=..-|+..|-.+.+ +||.......|=+-+--..+
T Consensus 102 ~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ 181 (224)
T KOG3111|consen 102 AELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPS 181 (224)
T ss_pred HHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCcc
Confidence 44555666667777655443333333332222478888877778887766643 45544444555555666677
Q ss_pred HHHHHHhcCCCEEEe-----CCCCHHHHHHHHHHHHHh
Q 006775 120 AVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (632)
Q Consensus 120 ~~~eAl~~GA~DYL~-----KP~~~eeL~~~L~~vlrk 152 (632)
.+.++.++||+-.+. +.-++.+..+.++...++
T Consensus 182 ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~ 219 (224)
T KOG3111|consen 182 TIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEK 219 (224)
T ss_pred hHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhh
Confidence 788899999986543 334666776666665543
No 319
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=26.79 E-value=5.4e+02 Score=29.11 Aligned_cols=101 Identities=13% Similarity=0.201 Sum_probs=61.5
Q ss_pred CccEEEEEeC---CH-HHHHHHHHHHHhC-Cce--EEEECCHHHHHHHHHHcCCCceEEEEecCCC-----------CCC
Q 006775 32 AGLRVLVVDD---DI-TCLRILEQMLRRC-LYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMD 93 (632)
Q Consensus 32 ~glrVLIVDD---d~-~~r~~L~~lL~~~-gy~--V~~a~sg~eALe~L~e~~~~pDLVILDi~MP-----------dmD 93 (632)
.+..++.||- +. ...+.++.+-+.+ ... +..+.+.++|..++.. ..|.|.+-+.-. +..
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g~G~~~~t~~~~~~g~p 311 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGIGPGSICTTRIVAGVGVP 311 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECCCCCcCCccceecCCCcc
Confidence 4678888887 43 3333343333332 222 3367788888887753 378876543110 011
Q ss_pred HHHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 94 GFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 94 GleLl~~Lr---~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
-+.++..+. ....+|||.=.+-.....+.+|+.+||+....=
T Consensus 312 ~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 312 QITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred HHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 234444432 235789888777788889999999999987764
No 320
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.70 E-value=3.1e+02 Score=29.60 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=46.7
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCceEEE--------ECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006775 34 LRVLVVDDDITC---LRILEQMLRRCLYNVTT--------CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 34 lrVLIVDDd~~~---r~~L~~lL~~~gy~V~~--------a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr 102 (632)
-|+|||-|.... .+.+...|+..+..+.. ..+..++.+.+++.. +|+||- +.+..-+++.+.+.
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGS~iD~aK~ia 97 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNG--ADVVIG---IGGGKTLDTAKAVA 97 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcC--CCEEEE---ecCchhhHHHHHHH
Confidence 588888876443 34455556655544321 123445666666544 898775 56777888888876
Q ss_pred ccCCCcEEEEe
Q 006775 103 LEMDLPVIMMS 113 (632)
Q Consensus 103 ~~~~iPIIvLS 113 (632)
....+|+|.+-
T Consensus 98 ~~~~~P~iaIP 108 (351)
T cd08170 98 DYLGAPVVIVP 108 (351)
T ss_pred HHcCCCEEEeC
Confidence 54567877764
No 321
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=26.66 E-value=4.5e+02 Score=23.24 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=15.3
Q ss_pred EeCCHHHHHHHHHHHHhCCceEEEEC
Q 006775 39 VDDDITCLRILEQMLRRCLYNVTTCS 64 (632)
Q Consensus 39 VDDd~~~r~~L~~lL~~~gy~V~~a~ 64 (632)
-|.+......+...|...||.+....
T Consensus 8 ~~~~k~~~~~~~~~l~~~G~~l~aT~ 33 (110)
T cd01424 8 ADRDKPEAVEIAKRLAELGFKLVATE 33 (110)
T ss_pred EcCcHhHHHHHHHHHHHCCCEEEEch
Confidence 34444444455566666788886443
No 322
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=26.62 E-value=3.8e+02 Score=29.52 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=41.4
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCceEEEEC---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006775 34 LRVLVVDDDIT----CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (632)
Q Consensus 34 lrVLIVDDd~~----~r~~L~~lL~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~ 100 (632)
-|+|||-|... ..+.+...|+..+..+..+. +..++.+.+++.. +|+||- ..+.+-++..|.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~--~D~Iia---iGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENN--CDSVIS---LGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcC--CCEEEE---eCCchHHHHHHH
Confidence 48999988633 34567777877676654443 3456777777654 899874 456666777666
Q ss_pred H
Q 006775 101 I 101 (632)
Q Consensus 101 L 101 (632)
+
T Consensus 107 i 107 (383)
T PRK09860 107 I 107 (383)
T ss_pred H
Confidence 5
No 323
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=26.48 E-value=3.4e+02 Score=27.04 Aligned_cols=116 Identities=20% Similarity=0.201 Sum_probs=56.9
Q ss_pred ccEEEEEeCC---HHHHHHHHHHHHhCCceEEEECC---HH----HHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006775 33 GLRVLVVDDD---ITCLRILEQMLRRCLYNVTTCSQ---AA----VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 33 glrVLIVDDd---~~~r~~L~~lL~~~gy~V~~a~s---g~----eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr 102 (632)
+.+|.+|--| .-..+.|+.+-+..+..+..+.. .. ++++.++.. .+|+||+|.-=-...-.+++++++
T Consensus 29 ~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~--~~D~vlIDT~Gr~~~d~~~~~el~ 106 (196)
T PF00448_consen 29 GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK--GYDLVLIDTAGRSPRDEELLEELK 106 (196)
T ss_dssp T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT--TSSEEEEEE-SSSSTHHHHHHHHH
T ss_pred cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc--CCCEEEEecCCcchhhHHHHHHHH
Confidence 4566555444 24556667777777777776653 22 334444333 489999997321222234444442
Q ss_pred ----c-cCCCcEEEEeccCCHHHHHHHH---h-cCCCEE-EeCCCCHHHHHHHHHHHH
Q 006775 103 ----L-EMDLPVIMMSADGRVSAVMRGI---R-HGACDY-LIKPIREEELKNIWQHVV 150 (632)
Q Consensus 103 ----~-~~~iPIIvLSa~~d~e~~~eAl---~-~GA~DY-L~KP~~~eeL~~~L~~vl 150 (632)
. .+.-.++++++....+....+. + .+.+.. ++|=-....+-.++.-+.
T Consensus 107 ~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l~~~~ 164 (196)
T PF00448_consen 107 KLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALLSLAY 164 (196)
T ss_dssp HHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHHHHHH
T ss_pred HHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccceeHHH
Confidence 2 2344556667665554433332 2 345554 455333333334444333
No 324
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=26.45 E-value=4.8e+02 Score=27.79 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=50.7
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEec--CC---CC--CCHHHHHHHHhccCCCcEEEEeccC-CHHHHHHHHhcCCCEEE
Q 006775 62 TCSQAAVALDILRERKGCFDVVLSDV--HM---PD--MDGFKLLEHIGLEMDLPVIMMSADG-RVSAVMRGIRHGACDYL 133 (632)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVILDi--~M---Pd--mDGleLl~~Lr~~~~iPIIvLSa~~-d~e~~~eAl~~GA~DYL 133 (632)
.+++.++|.+..++.. +|.+-+.+ .- ++ .=|++++++|+....+|+++.-+.+ ..+...++++.|++.+=
T Consensus 151 s~t~~eea~~f~~~tg--~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 151 LLTSTTEAKRFAEETD--VDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred eeCCHHHHHHHHHhhC--CCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence 4788999988876533 78777733 11 11 2378999999877789999887443 55677889999998764
Q ss_pred e
Q 006775 134 I 134 (632)
Q Consensus 134 ~ 134 (632)
.
T Consensus 229 v 229 (281)
T PRK06806 229 V 229 (281)
T ss_pred E
Confidence 4
No 325
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=26.41 E-value=1.8e+02 Score=29.99 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=32.8
Q ss_pred CCCcEEEEecc------CCHHHHHHHHhcCCCEEEeCCCCHHHHHHH
Q 006775 105 MDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNI 145 (632)
Q Consensus 105 ~~iPIIvLSa~------~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~ 145 (632)
-.+|||+++-+ .+..++..+-++||++||.-.+.++|-...
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~ 140 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETL 140 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHH
Confidence 35899998754 466778888899999999988888876543
No 326
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=26.41 E-value=4.7e+02 Score=28.44 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=41.2
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCceEEEEC---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHH
Q 006775 34 LRVLVVDDDITCL-----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (632)
Q Consensus 34 lrVLIVDDd~~~r-----~~L~~lL~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~ 99 (632)
-|+|||-|..... +.+...|+..+.++..+. +..++.+.+++.. +|+||- ..+..-+++.+
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~aK 100 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFN--ADFVIG---IGGGSPLDAAK 100 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHH
Confidence 5899988875522 557777877666655443 2445666666654 898875 45666677777
Q ss_pred HH
Q 006775 100 HI 101 (632)
Q Consensus 100 ~L 101 (632)
.+
T Consensus 101 ~i 102 (357)
T cd08181 101 AI 102 (357)
T ss_pred HH
Confidence 54
No 327
>PRK10867 signal recognition particle protein; Provisional
Probab=26.36 E-value=1.9e+02 Score=32.78 Aligned_cols=54 Identities=24% Similarity=0.260 Sum_probs=31.0
Q ss_pred ccEEEEEeCCHHHH---HHHHHHHHhCCceEEEEC---CHHH----HHHHHHHcCCCceEEEEecC
Q 006775 33 GLRVLVVDDDITCL---RILEQMLRRCLYNVTTCS---QAAV----ALDILRERKGCFDVVLSDVH 88 (632)
Q Consensus 33 glrVLIVDDd~~~r---~~L~~lL~~~gy~V~~a~---sg~e----ALe~L~e~~~~pDLVILDi~ 88 (632)
+.+|++|+-|..-. +.++.+.+..+..+.... +..+ +++..+. ..+|+||+|.-
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~--~~~DvVIIDTa 192 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKE--NGYDVVIVDTA 192 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCC
Confidence 67899999885332 334444455565555432 3333 3333333 24999999973
No 328
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=26.25 E-value=4.8e+02 Score=27.73 Aligned_cols=84 Identities=18% Similarity=0.331 Sum_probs=56.7
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEec---C-C----CCCCHHHHHHHHhccCCCcEEEEecc-CCHHHHHHHHhcCCCEEE
Q 006775 63 CSQAAVALDILRERKGCFDVVLSDV---H-M----PDMDGFKLLEHIGLEMDLPVIMMSAD-GRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVILDi---~-M----PdmDGleLl~~Lr~~~~iPIIvLSa~-~d~e~~~eAl~~GA~DYL 133 (632)
+++.++|.+..++.. +|.+-+.+ + + |.. ++++++.|++..++|+++.-+. -+.+...+++++|++.+=
T Consensus 152 ~t~~eea~~f~~~tg--vD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 152 LADPDEAEQFVKETG--VDYLAAAIGTSHGKYKGEPGL-DFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKIN 228 (282)
T ss_pred cCCHHHHHHHHHHHC--cCEEeeccCccccccCCCCcc-CHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 568899998887443 78777542 1 1 222 5899999987778999888633 345667889999999775
Q ss_pred eCCCCHHHHHHHHHHHHHhh
Q 006775 134 IKPIREEELKNIWQHVVRKR 153 (632)
Q Consensus 134 ~KP~~~eeL~~~L~~vlrk~ 153 (632)
.- .+|..++.+.++..
T Consensus 229 v~----T~l~~a~~~~~~~~ 244 (282)
T TIGR01859 229 ID----TDCRIAFTAAIRKV 244 (282)
T ss_pred EC----cHHHHHHHHHHHHH
Confidence 54 34555555555443
No 329
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.15 E-value=3.7e+02 Score=28.68 Aligned_cols=91 Identities=8% Similarity=-0.037 Sum_probs=57.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--c-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006775 35 RVLVVDDDITCLRILEQMLRR----CL--Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~~----~g--y-~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~i 107 (632)
.|||-|.|-.....+...+.. .+ . .-.++.+.+++.+.+.. .+|.|.+|- -|.+.++++......
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-----~~~e~l~~~~~~~~~ 231 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-----RTPDEIREFVKLVPS 231 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-----CCHHHHHHHHHhcCC
Confidence 588888876555444444432 23 2 23578999999888642 489999973 245666665432222
Q ss_pred cE-EEEeccCCHHHHHHHHhcCCCEEE
Q 006775 108 PV-IMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 108 PI-IvLSa~~d~e~~~eAl~~GA~DYL 133 (632)
|+ +..++--+.+.+.+..+.|++.+-
T Consensus 232 ~i~i~AiGGIt~~ni~~~a~~Gvd~IA 258 (277)
T PRK08072 232 AIVTEASGGITLENLPAYGGTGVDYIS 258 (277)
T ss_pred CceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 33 334455677788888899998754
No 330
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=26.03 E-value=5.3e+02 Score=30.36 Aligned_cols=55 Identities=24% Similarity=0.218 Sum_probs=35.3
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecC
Q 006775 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH 88 (632)
Q Consensus 33 glrVLIVDDd~~~---r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~ 88 (632)
+.+|.+|+-|..- .+.++..-+..++.+..+.+..+..+.++... .+|+||+|.-
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-~~DLVLIDTa 437 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-DYKLVLIDTA 437 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-cCCEEEecCC
Confidence 4578888876522 23333333344666777777777777776543 5999999973
No 331
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=25.84 E-value=5e+02 Score=26.52 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=47.2
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEecCCC------CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEE
Q 006775 63 CSQAAVALDILRERKGCFDVVLSDVHMP------DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVILDi~MP------dmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL 133 (632)
+.+..++.+..+ . ..|.|.+.-..+ .--|+++++++.....+||+.+-+- ..+.+.+++++||+++-
T Consensus 118 ~~s~~~a~~A~~-~--gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~GA~giA 190 (221)
T PRK06512 118 LRDRHGAMEIGE-L--RPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAETGAEFVA 190 (221)
T ss_pred CCCHHHHHHhhh-c--CCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHhCCCEEE
Confidence 446666666432 2 478888764431 1247889988876678999999765 56677888999999873
No 332
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=25.80 E-value=5.8e+02 Score=32.84 Aligned_cols=113 Identities=13% Similarity=0.184 Sum_probs=71.5
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCceEEEEC---CHHHHHHHHHHcCCCceEEEEecCCC-CCC-HHHHHHHHhc
Q 006775 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMP-DMD-GFKLLEHIGL 103 (632)
Q Consensus 33 glrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a~---sg~eALe~L~e~~~~pDLVILDi~MP-dmD-GleLl~~Lr~ 103 (632)
.-+|++. |-|..=..++..+|+..||+|+... ..++.++.+++.. +|+|-+...|. .+. -.++++.|+.
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~--~diVgLS~Lmt~t~~~m~~vi~~L~~ 809 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHN--ADVIGLSGLITPSLDEMKEVAEEMNR 809 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcccccHHHHHHHHHHHHh
Confidence 3477777 6667777788888888999997544 4667777777765 99999988775 333 3456777754
Q ss_pred -cCCCcEEEEeccCCHHHHHHHH---hcCCCEEEeCCCCHHHHHHHHHHHH
Q 006775 104 -EMDLPVIMMSADGRVSAVMRGI---RHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 104 -~~~iPIIvLSa~~d~e~~~eAl---~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
...++|++=-+.-+.+....-+ ..|++.|-.- ..+-....++++
T Consensus 810 ~g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~d---A~~av~~~~~l~ 857 (1178)
T TIGR02082 810 RGITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLD---ASRAVTVMDTLM 857 (1178)
T ss_pred cCCCceEEEeccccchhHHHhhhhhhccCCeEEecC---HHHHHHHHHHHh
Confidence 3467777655444444443212 2388777653 333334444444
No 333
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=25.52 E-value=4.4e+02 Score=28.87 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCceEEEECC---------HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006775 34 LRVLVVDDDITC----LRILEQMLRRCLYNVTTCSQ---------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (632)
Q Consensus 34 lrVLIVDDd~~~----r~~L~~lL~~~gy~V~~a~s---------g~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~ 100 (632)
-|+|||.|.... .+.++..|+..+.++..+.. .+++.+.+++. .+|+||- ..+..-+++.|.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKE--GCDFIIS---IGGGSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCcHHHHHHHH
Confidence 479999886543 34677778776666655432 34566666654 4898874 456666777766
Q ss_pred H
Q 006775 101 I 101 (632)
Q Consensus 101 L 101 (632)
+
T Consensus 104 i 104 (377)
T cd08176 104 I 104 (377)
T ss_pred H
Confidence 5
No 334
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.48 E-value=4.5e+02 Score=27.86 Aligned_cols=102 Identities=17% Similarity=0.219 Sum_probs=56.8
Q ss_pred cEEEEEeC--C---HHHHHHHHHHHHhCCceEEEECCHHHHHHH-----H-HHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006775 34 LRVLVVDD--D---ITCLRILEQMLRRCLYNVTTCSQAAVALDI-----L-RERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 34 lrVLIVDD--d---~~~r~~L~~lL~~~gy~V~~a~sg~eALe~-----L-~e~~~~pDLVILDi~MPdmDGleLl~~Lr 102 (632)
|||.|+-. . ......+..+|+..++++.......+.... + ......+|+||+ -+.||. +++.++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDGT-lL~a~~ 75 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIA----IGGDGT-ILRIEH 75 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEE----EeCcHH-HHHHHH
Confidence 57777722 2 233455666676778887765332221110 0 000113677766 266774 223332
Q ss_pred -ccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 006775 103 -LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 103 -~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~ 154 (632)
....+||+.+.. |-.+|+. .++++++...+.++++..+
T Consensus 76 ~~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~~ 114 (277)
T PRK03708 76 KTKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEGDY 114 (277)
T ss_pred hcCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcCCc
Confidence 234788887763 4446665 5778999999998887643
No 335
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=25.43 E-value=1.7e+02 Score=32.90 Aligned_cols=121 Identities=12% Similarity=0.158 Sum_probs=65.5
Q ss_pred cCCCCCCCcccccccCCCC---CCCccEEEEEeCCHH---HHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEE
Q 006775 11 SGGSGYGSSRAADVAVPDQ---FPAGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVL 84 (632)
Q Consensus 11 mGG~g~Gs~~~~~~~~p~~---~p~glrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVI 84 (632)
+|=.|.|.++|..= +.+. .-...||-||-=|.. ..+.|+.+-+-.+..+..+.++.+..+.+.... .+|+||
T Consensus 209 VGPTGVGKTTTlAK-LAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~-~~d~IL 286 (407)
T COG1419 209 VGPTGVGKTTTLAK-LAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR-DCDVIL 286 (407)
T ss_pred ECCCCCcHHHHHHH-HHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh-cCCEEE
Confidence 33356666665331 1111 123456766665532 223333333445788889999998887777654 579999
Q ss_pred Eec-CCCCCCHHHHHHHHh----ccCCCc-EEEEeccCCHHHHHHHH----hcCCCEEEe
Q 006775 85 SDV-HMPDMDGFKLLEHIG----LEMDLP-VIMMSADGRVSAVMRGI----RHGACDYLI 134 (632)
Q Consensus 85 LDi-~MPdmDGleLl~~Lr----~~~~iP-IIvLSa~~d~e~~~eAl----~~GA~DYL~ 134 (632)
+|. .++..|.. .+++++ ....+- -+++++........+.+ ..+.+.+|.
T Consensus 287 VDTaGrs~~D~~-~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~ 345 (407)
T COG1419 287 VDTAGRSQYDKE-KIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIF 345 (407)
T ss_pred EeCCCCCccCHH-HHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEE
Confidence 996 34444543 233332 223333 34566666555555555 345555543
No 336
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=25.39 E-value=4.5e+02 Score=27.10 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHcCCCceEEEEecCCCC---CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCC
Q 006775 64 SQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 64 ~sg~eALe~L~e~~~~pDLVILDi~MPd---mDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
.+..+..+.+.... --.+.++|+.-.. ..-++++++|+....+||++--+-.+.+.+.+++..||+..+.-.
T Consensus 30 ~dp~~~a~~~~~~G-~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt 104 (254)
T TIGR00735 30 GDPVELAQRYDEEG-ADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINT 104 (254)
T ss_pred CCHHHHHHHHHHcC-CCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 46777777766532 2468888987543 234677888876678999998888999999999999998876643
No 337
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=25.05 E-value=4.2e+02 Score=27.96 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=56.6
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC---ceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH-hcc-C
Q 006775 35 RVLVVDDDITCLRILEQMLR----RCL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLE-M 105 (632)
Q Consensus 35 rVLIVDDd~~~r~~L~~lL~----~~g---y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~L-r~~-~ 105 (632)
.|||.|++..+.-.+...+. ..+ .....+.+.+++++.+.. .+|.|.+|-.-| +-++++ +.. .
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~---gaDyI~ld~~~~-----e~lk~~v~~~~~ 221 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA---GADIIMLDNMKP-----EEIKEAVQLLKG 221 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHHhcC
Confidence 58888887655433333332 222 234688999999988753 489999986433 333333 211 2
Q ss_pred CCcEEEEeccCCHHHHHHHHhcCCCEEEe
Q 006775 106 DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 106 ~iPIIvLSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
.+|+++ ++--+.+.+.+..+.|++.+-.
T Consensus 222 ~ipi~A-sGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 222 RVLLEA-SGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCcEEE-ECCCCHHHHHHHHHcCCCEEEe
Confidence 366554 5556778888888999987643
No 338
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=25.03 E-value=2.5e+02 Score=29.46 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCCCceEEEEecCC----CC---CCHHHHHHHHhccCCCcEEEEecc-CC-----HHHHHHHHhcCCCE-
Q 006775 66 AAVALDILRERKGCFDVVLSDVHM----PD---MDGFKLLEHIGLEMDLPVIMMSAD-GR-----VSAVMRGIRHGACD- 131 (632)
Q Consensus 66 g~eALe~L~e~~~~pDLVILDi~M----Pd---mDGleLl~~Lr~~~~iPIIvLSa~-~d-----~e~~~eAl~~GA~D- 131 (632)
...|++.+++.. ..+++|+.... |. .--+..+..++...++||++-+++ .. ......|+..||++
T Consensus 148 ~~~Ave~i~~~G-n~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl 226 (260)
T TIGR01361 148 WLYAAEYILSSG-NGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGL 226 (260)
T ss_pred HHHHHHHHHHcC-CCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEE
Confidence 445667776543 46899988522 21 123455566665567999984444 33 44556788999998
Q ss_pred EEeCCCCH
Q 006775 132 YLIKPIRE 139 (632)
Q Consensus 132 YL~KP~~~ 139 (632)
++-|-+++
T Consensus 227 ~iE~H~t~ 234 (260)
T TIGR01361 227 MIEVHPDP 234 (260)
T ss_pred EEEeCCCc
Confidence 66665544
No 339
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=24.92 E-value=5.5e+02 Score=27.40 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=58.1
Q ss_pred EEEEE--eCCHHHH---HHHHHHHHhCCceEEEECCHHHHHHH-------HHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006775 35 RVLVV--DDDITCL---RILEQMLRRCLYNVTTCSQAAVALDI-------LRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 35 rVLIV--DDd~~~r---~~L~~lL~~~gy~V~~a~sg~eALe~-------L~e~~~~pDLVILDi~MPdmDGleLl~~Lr 102 (632)
+|+|+ .+.+... ..+...|+..++++.........+.. .......+|+||+ -+.||. +++.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDGT-MLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcHH-HHHHHH
Confidence 37776 2334444 44555566667776654432221110 0111124788877 266763 334443
Q ss_pred c--cCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 006775 103 L--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 103 ~--~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~ 154 (632)
. ..++|++-+. .|-.+||. .++.+++...+.++++..+
T Consensus 82 ~~~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 82 QLAPYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred HhcCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCCc
Confidence 2 3567877554 46667888 7888999999999887553
No 340
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=24.92 E-value=5.3e+02 Score=33.35 Aligned_cols=112 Identities=13% Similarity=0.177 Sum_probs=70.4
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCceEEEEC---CHHHHHHHHHHcCCCceEEEEecCCCC-CC-HHHHHHHHhc-
Q 006775 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGL- 103 (632)
Q Consensus 34 lrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a~---sg~eALe~L~e~~~~pDLVILDi~MPd-mD-GleLl~~Lr~- 103 (632)
-+||+. |-|..=..++..+|+..||+|+... ..++.++.+.+.. +|+|.+...|.. +. -.++++.|+.
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~--~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEEN--ADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 478877 7777777788888999999997544 4667777777765 999999887753 33 3456777753
Q ss_pred cCCCcEEEEeccCCHHH-HHHH-Hhc-CCCEEEeCCCCHHHHHHHHHHHH
Q 006775 104 EMDLPVIMMSADGRVSA-VMRG-IRH-GACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 104 ~~~iPIIvLSa~~d~e~-~~eA-l~~-GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
..++||++=-+.-+... ..+. -.+ |++.|..- ..+-....++++
T Consensus 830 g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~D---A~~~v~~~~~l~ 876 (1229)
T PRK09490 830 GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTD---ASRAVGVVSSLL 876 (1229)
T ss_pred CCCCeEEEEeeccchhhhhhhhhhcccCCcEEecC---HHHHHHHHHHHh
Confidence 35677776544433322 1111 122 88777653 333334444443
No 341
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=24.81 E-value=1.5e+02 Score=31.42 Aligned_cols=92 Identities=23% Similarity=0.253 Sum_probs=57.3
Q ss_pred CCCCCcccccccCCCCCCCccEEEEEeCCHHHHHHHHHHHHhCCce--EE-EECCHHHHHHHHHHcCCCceEEEEecCCC
Q 006775 14 SGYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (632)
Q Consensus 14 ~g~Gs~~~~~~~~p~~~p~glrVLIVDDd~~~r~~L~~lL~~~gy~--V~-~a~sg~eALe~L~e~~~~pDLVILDi~MP 90 (632)
.|.||++....-.-..-| .-+|.-+|-+++..+.-++-|+..++. |. ...|..+... .. .+|.|++|+ |
T Consensus 101 AGtGSG~lt~~La~~vg~-~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~---~~--~vDav~LDm--p 172 (256)
T COG2519 101 AGTGSGALTAYLARAVGP-EGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID---EE--DVDAVFLDL--P 172 (256)
T ss_pred cccCchHHHHHHHHhhCC-CceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc---cc--ccCEEEEcC--C
Confidence 578888855442211222 237999999999999988888886542 22 2333333322 22 599999995 4
Q ss_pred CCCHHHHHHHHh--ccCCCcEEEEecc
Q 006775 91 DMDGFKLLEHIG--LEMDLPVIMMSAD 115 (632)
Q Consensus 91 dmDGleLl~~Lr--~~~~iPIIvLSa~ 115 (632)
+-+++++.+. ..+...+++++..
T Consensus 173 --~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 173 --DPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred --ChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 4677888774 2456666666643
No 342
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=24.72 E-value=5.2e+02 Score=26.80 Aligned_cols=75 Identities=9% Similarity=0.097 Sum_probs=48.2
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCceEEEE-------------CCHHHHHHHHHHc-CCCceEEEEecCCCCCCHHHHH
Q 006775 34 LRVLVVDDD-ITCLRILEQMLRRCLYNVTTC-------------SQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLL 98 (632)
Q Consensus 34 lrVLIVDDd-~~~r~~L~~lL~~~gy~V~~a-------------~sg~eALe~L~e~-~~~pDLVILDi~MPdmDGleLl 98 (632)
-||-|+-.- +.+.+.++..|+..|++|... -+.+...+.+++. ..++|.|++-. -++..++++
T Consensus 121 ~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisC--TnLrt~~vi 198 (239)
T TIGR02990 121 RRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSC--TALRAATCA 198 (239)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeC--CCchhHHHH
Confidence 478888876 566778888999989887543 2344444454432 22467666642 345567777
Q ss_pred HHHhccCCCcEE
Q 006775 99 EHIGLEMDLPVI 110 (632)
Q Consensus 99 ~~Lr~~~~iPII 110 (632)
+.+...-..|||
T Consensus 199 ~~lE~~lGkPVl 210 (239)
T TIGR02990 199 QRIEQAIGKPVV 210 (239)
T ss_pred HHHHHHHCCCEE
Confidence 777655677775
No 343
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=24.67 E-value=2.4e+02 Score=30.02 Aligned_cols=57 Identities=19% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHh-ccCCCcEEEEe------ccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 95 FKLLEHIG-LEMDLPVIMMS------ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 95 leLl~~Lr-~~~~iPIIvLS------a~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
+++++.+| ....+|+++++ .+.-.....++.+.|+++.|.-.+..++-......+.+
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~ 145 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEK 145 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHH
No 344
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=24.65 E-value=5e+02 Score=30.23 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=38.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 006775 80 FDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 80 pDLVILDi~MPdmDGleLl~~Lr--~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~ 154 (632)
+|+||+ -+.||. +++..+ ....+||+-+ ..|-.+||. ++..+++...+.++++..+
T Consensus 263 ~DlVIs----iGGDGT-lL~Aar~~~~~~iPILGI-------------N~G~LGFLt-~i~~~e~~~~Le~il~G~y 320 (508)
T PLN02935 263 VDLVIT----LGGDGT-VLWAASMFKGPVPPVVPF-------------SMGSLGFMT-PFHSEQYRDCLDAILKGPI 320 (508)
T ss_pred CCEEEE----ECCcHH-HHHHHHHhccCCCcEEEE-------------eCCCcceec-ccCHHHHHHHHHHHHcCCc
Confidence 677666 366774 334333 2346787754 357788985 6899999999999987643
No 345
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=24.58 E-value=1.1e+02 Score=30.92 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=45.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEec--CCCCCCHH--HHHHHHhccCCCcE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV--HMPDMDGF--KLLEHIGLEMDLPV 109 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi--~MPdmDGl--eLl~~Lr~~~~iPI 109 (632)
|||||+|........+...|.+.|+.+.........+....+....+|.||+-= ..|..++. ++++++. ...+||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~-~~~~Pi 79 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACA-AAGTPL 79 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHH-hCCCCE
Confidence 589999999888888888898888877655433221111111111378777631 12322232 2344432 246888
Q ss_pred EEEec
Q 006775 110 IMMSA 114 (632)
Q Consensus 110 IvLSa 114 (632)
+-+.-
T Consensus 80 LGIC~ 84 (214)
T PRK07765 80 LGVCL 84 (214)
T ss_pred EEEcc
Confidence 87653
No 346
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=24.36 E-value=6.7e+02 Score=25.87 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=34.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEec
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi 87 (632)
+.+|..+|-++...+..+..+...+..+.. .+..+.+.... ...+|+|++|-
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~--~~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTAL--RGRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhc--CCCEeEEEECC
Confidence 358999999999998888888766654433 33333322111 12599999984
No 347
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=24.27 E-value=4.9e+02 Score=27.09 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=35.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-----ceE-EEECCHHHHHHHHHHcCCCceEEEEecCCC
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCL-----YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~g-----y~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MP 90 (632)
..+|.+||-++.+.+..++.+.... -.+ ....++.+.+ +.....+|+||+|..-|
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l---~~~~~~yDvIi~D~~~~ 156 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFL---ADTENTFDVIIVDSTDP 156 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHH---HhCCCCccEEEEeCCCC
Confidence 3579999999999888888775421 112 1334554444 33334699999997544
No 348
>PRK04457 spermidine synthase; Provisional
Probab=24.27 E-value=4e+02 Score=27.78 Aligned_cols=52 Identities=13% Similarity=0.078 Sum_probs=36.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--ceE-EEECCHHHHHHHHHHcCCCceEEEEec
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCL--YNV-TTCSQAAVALDILRERKGCFDVVLSDV 87 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~g--y~V-~~a~sg~eALe~L~e~~~~pDLVILDi 87 (632)
..+|.+||=++.+.+..++.+...+ -.+ ....++.+.+. .....+|+|++|.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~---~~~~~yD~I~~D~ 144 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA---VHRHSTDVILVDG 144 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH---hCCCCCCEEEEeC
Confidence 4689999999999999888875322 223 24566666554 3334699999996
No 349
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=24.22 E-value=7.3e+02 Score=27.39 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=50.9
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEE
Q 006775 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-------mDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL 133 (632)
.++.+.+++.+.... .+|.|++.-..+. .-|++.++++.....+||+.+-+- +.+.+.+.+.+|++++-
T Consensus 245 ~S~Hs~~e~~~A~~~---GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI-~~~ni~~l~~~Ga~gVA 320 (347)
T PRK02615 245 RSTTNPEEMAKAIAE---GADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGI-DKSNIPEVLQAGAKRVA 320 (347)
T ss_pred EecCCHHHHHHHHHc---CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCcEEE
Confidence 467788887776543 4899987654442 247899999876677999998665 46677788899998874
Q ss_pred e
Q 006775 134 I 134 (632)
Q Consensus 134 ~ 134 (632)
.
T Consensus 321 v 321 (347)
T PRK02615 321 V 321 (347)
T ss_pred E
Confidence 3
No 350
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.06 E-value=6.3e+02 Score=25.96 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=34.5
Q ss_pred HHHHHHhccCCCcEEEEe-----ccCCHHHHHHHHhcCCCEEEeC--CCC-HHHHHHHHHHH
Q 006775 96 KLLEHIGLEMDLPVIMMS-----ADGRVSAVMRGIRHGACDYLIK--PIR-EEELKNIWQHV 149 (632)
Q Consensus 96 eLl~~Lr~~~~iPIIvLS-----a~~d~e~~~eAl~~GA~DYL~K--P~~-~eeL~~~L~~v 149 (632)
++++.++....+|+++++ ..+-...+..+.++|++.++.- |++ .+++...++.+
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~ 125 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEII 125 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHH
Confidence 467777766788987664 2233344667789999999886 333 45655555444
No 351
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=24.02 E-value=1e+03 Score=26.42 Aligned_cols=66 Identities=21% Similarity=0.266 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCC-------CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEe
Q 006775 65 QAAVALDILRERKGCFDVVLSDVHM-------PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 65 sg~eALe~L~e~~~~pDLVILDi~M-------PdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
+..+..+.+.+. .+|+|.++... +..+..++.+.++. .++|||. ..-.+.+.+.+++++||+..+.
T Consensus 142 ~~~e~a~~l~ea--Gvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEA--GVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHC--CCCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 355555666554 48999997532 11245566665554 5788876 4455677788889999998754
No 352
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=23.99 E-value=3.8e+02 Score=28.60 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=48.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCce-E-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCH--HHHHHHHhccCCCc
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG--FKLLEHIGLEMDLP 108 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~-V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDG--leLl~~Lr~~~~iP 108 (632)
+.+|+-||-++...+..+..++..+.. + ..+.+..+... .....||+|++| |...| -++++.|.....-.
T Consensus 195 ~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~---~~~~~~D~Vv~d---PPr~G~~~~~~~~l~~~~~~~ 268 (315)
T PRK03522 195 GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFAT---AQGEVPDLVLVN---PPRRGIGKELCDYLSQMAPRF 268 (315)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHH---hcCCCCeEEEEC---CCCCCccHHHHHHHHHcCCCe
Confidence 358999999999988888888766542 2 24555555432 122259999999 33344 35666664332234
Q ss_pred EEEEeccC
Q 006775 109 VIMMSADG 116 (632)
Q Consensus 109 IIvLSa~~ 116 (632)
||.++...
T Consensus 269 ivyvsc~p 276 (315)
T PRK03522 269 ILYSSCNA 276 (315)
T ss_pred EEEEECCc
Confidence 55555544
No 353
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=23.96 E-value=1.4e+02 Score=31.58 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=39.3
Q ss_pred HHHHHHHHh-ccCCCcEEEEeccC------CHHHHHHHHhcCCCEEEeCCCCHHHHHHHHH
Q 006775 94 GFKLLEHIG-LEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (632)
Q Consensus 94 GleLl~~Lr-~~~~iPIIvLSa~~------d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~ 147 (632)
.+++++++| ...++|+|++|-.. -.....++-++|+++.|.-.+..++-.....
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~ 134 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELRE 134 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHH
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHH
Confidence 577888888 77899999998643 2345667778999999997777766544433
No 354
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.87 E-value=4.3e+02 Score=27.47 Aligned_cols=68 Identities=13% Similarity=0.238 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCC-C--HHHHHHHHhccCCCcEEEEeccCCHHHHHHHH-hcCCCEEEe
Q 006775 66 AAVALDILRERKGCFDVVLSDVHMPDM-D--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGI-RHGACDYLI 134 (632)
Q Consensus 66 g~eALe~L~e~~~~pDLVILDi~MPdm-D--GleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl-~~GA~DYL~ 134 (632)
..+..+.+.+.. .-.+++.|+.-.++ . -++++++++....+|||.-.+-.+.+.+.+++ ..|+++.+.
T Consensus 154 ~~e~~~~~~~~g-~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 154 PLELAKEYEALG-AGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred HHHHHHHHHHcC-CCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 445555555432 23588888754322 2 36778888777889999988888999999998 789987654
No 355
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.79 E-value=7e+02 Score=26.04 Aligned_cols=94 Identities=15% Similarity=0.225 Sum_probs=58.2
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006775 34 LRVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (632)
Q Consensus 34 lrVLIVDDd--~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIv 111 (632)
|++.|+..+ ....+.++..|.+.++.+....+.. ......|+||+ -+.||. +++.++.. .+||+-
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~d~vi~----iGGDGT-~L~a~~~~-~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASA-------SGKVTADLIIV----VGGDGT-VLKAAKKV-GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccc-------cccCCCCEEEE----ECCcHH-HHHHHHHc-CCCEEE
Confidence 355555443 3444556666776777766554432 11224788777 366774 34445444 888886
Q ss_pred EeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 006775 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 112 LSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~ 154 (632)
+. .|-.+||. .++.+++...+.++.+...
T Consensus 68 in-------------~G~lGfl~-~~~~~~~~~~l~~~~~g~~ 96 (256)
T PRK14075 68 FK-------------AGRLGFLS-SYTLEEIDRFLEDLKNWNF 96 (256)
T ss_pred Ee-------------CCCCcccc-ccCHHHHHHHHHHHHcCCc
Confidence 65 35567777 5788999999998877543
No 356
>smart00426 TEA TEA domain.
Probab=23.78 E-value=56 Score=27.73 Aligned_cols=47 Identities=30% Similarity=0.333 Sum_probs=27.7
Q ss_pred cchHHHHHHHHHHHHHhcccccc-------------HHHHHHH-hcCCCcChH--HHHHHHHH
Q 006775 224 VWSVELHQQFVSAVNQLGIDKAV-------------PKRILEL-MNVPGLTRE--NVASHLQK 270 (632)
Q Consensus 224 ~wt~ELh~qFl~av~~Lgidka~-------------pK~ILel-M~v~gltre--~taSHLqR 270 (632)
+|..++...|++++...--.... -+-|-+. ....|..|. +|+||+|-
T Consensus 5 vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv 67 (68)
T smart00426 5 VWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 67 (68)
T ss_pred cCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence 68888888998888877322000 0111122 234666655 69999873
No 357
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=23.73 E-value=6.4e+02 Score=25.77 Aligned_cols=105 Identities=15% Similarity=0.218 Sum_probs=56.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--ceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~g--y~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPII 110 (632)
.++++|+.+.+.. +.++..+...+ ..+.......+..+++.. .|++++-... +.-|..+++.+. ..+|+|
T Consensus 219 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~-e~~~~~~~Ea~a--~G~PvI 290 (360)
T cd04951 219 DIKLLIAGDGPLR-ATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAW-EGFGLVVAEAMA--CELPVV 290 (360)
T ss_pred CeEEEEEcCCCcH-HHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccc-cCCChHHHHHHH--cCCCEE
Confidence 4567777665432 34444454432 224333333344444432 4666654332 223566677664 456777
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHH
Q 006775 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (632)
Q Consensus 111 vLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlr 151 (632)
+ +..+. ..+.+.. .+++..+-+.+++.+.+..+++
T Consensus 291 ~-~~~~~---~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 291 A-TDAGG---VREVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred E-ecCCC---hhhEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 5 32222 2222222 5678888999999999988763
No 358
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=23.62 E-value=3.2e+02 Score=26.86 Aligned_cols=71 Identities=7% Similarity=-0.041 Sum_probs=51.4
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHhcCCCEEEeCC
Q 006775 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 60 V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~-~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
+..+.+.+|+.+.++. .+|.|-++- .+. .|.++++.++.. +.+|++.+.+- +.+.+.+.++.|++....-.
T Consensus 101 i~gv~t~~e~~~A~~~---Gad~i~~~p-~~~-~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s 172 (190)
T cd00452 101 LPGVATPTEIMQALEL---GADIVKLFP-AEA-VGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGS 172 (190)
T ss_pred ECCcCCHHHHHHHHHC---CCCEEEEcC-Ccc-cCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEch
Confidence 3456688998887653 489998853 333 389999998643 46888877665 77888899999988765543
No 359
>PLN02335 anthranilate synthase
Probab=23.61 E-value=98 Score=31.57 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=44.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecC--CCCCCHHHHHHHHhc-cCCCcE
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDGFKLLEHIGL-EMDLPV 109 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~--MPdmDGleLl~~Lr~-~~~iPI 109 (632)
..+|||||-...+...+.+.|+..++.+..+......++.+... .||.||+-=. -|...+ ...+.++. ...+||
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~--~~d~iVisgGPg~p~d~~-~~~~~~~~~~~~~Pi 94 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRK--NPRGVLISPGPGTPQDSG-ISLQTVLELGPLVPL 94 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhc--CCCEEEEcCCCCChhhcc-chHHHHHHhCCCCCE
Confidence 45899999766777788899998888776665421112222222 3777776321 121122 12344432 346888
Q ss_pred EEEe
Q 006775 110 IMMS 113 (632)
Q Consensus 110 IvLS 113 (632)
+-+.
T Consensus 95 LGIC 98 (222)
T PLN02335 95 FGVC 98 (222)
T ss_pred EEec
Confidence 8765
No 360
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=23.38 E-value=3e+02 Score=31.45 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCceEEEEecCCC-CCCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHhcCCCEEE
Q 006775 67 AVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (632)
Q Consensus 67 ~eALe~L~e~~~~pDLVILDi~MP-dmDGleLl~~Lr~~-~~iPIIvLSa~~d~e~~~eAl~~GA~DYL 133 (632)
.++.+.+.+.. +|++++|..-. ...-++.+++|+.. +++|||+ -.-.+.+.+..++++||+...
T Consensus 230 ~e~a~~L~~ag--vdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEAG--VDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHhC--CCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 34555555443 89999997432 33466788888754 5788877 555667788899999998764
No 361
>PRK05637 anthranilate synthase component II; Provisional
Probab=23.28 E-value=1.4e+02 Score=30.22 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=45.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEe--cCCCCCCHHHHHHHHhc-cCCCcEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD--VHMPDMDGFKLLEHIGL-EMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILD--i~MPdmDGleLl~~Lr~-~~~iPII 110 (632)
.||||||-...+...+...|+..++.+..+..... ++.+... .||.||+- -.-|...+ +..+.++. ...+||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~~--~~~~iIlsgGPg~~~d~~-~~~~li~~~~~~~PiL 77 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILAA--NPDLICLSPGPGHPRDAG-NMMALIDRTLGQIPLL 77 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHhc--CCCEEEEeCCCCCHHHhh-HHHHHHHHHhCCCCEE
Confidence 37999999988889999999998887776655322 2223222 37888872 22221111 12222321 2368888
Q ss_pred EEe
Q 006775 111 MMS 113 (632)
Q Consensus 111 vLS 113 (632)
-+.
T Consensus 78 GIC 80 (208)
T PRK05637 78 GIC 80 (208)
T ss_pred EEc
Confidence 765
No 362
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=23.26 E-value=2.1e+02 Score=30.29 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=41.2
Q ss_pred HHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCC
Q 006775 73 LRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (632)
Q Consensus 73 L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~ 138 (632)
+++.. ||++|+=-=-+..-|-.-++.+-...++|.|+++...... ..++++..-.+|+.-+.+
T Consensus 55 ~~~~~--pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 55 LKEWD--PDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK-AKDALEEEGFGYIIVKAD 117 (276)
T ss_dssp HHHH----SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS
T ss_pred HHhhC--CCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh-hHHHHHhcCCcEEEEecC
Confidence 34554 8988875444455688888887666899999999876655 467887777888776654
No 363
>PRK05670 anthranilate synthase component II; Provisional
Probab=23.13 E-value=1.1e+02 Score=30.01 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=33.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEE
Q 006775 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (632)
Q Consensus 36 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIL 85 (632)
|||||-....-..+.+.|.+.++++..........+.+... .||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEAL--NPDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhC--CCCEEEE
Confidence 89999999999999999999888876654432112222222 3887777
No 364
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=23.07 E-value=8.2e+02 Score=25.89 Aligned_cols=70 Identities=19% Similarity=0.118 Sum_probs=47.7
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEecCC-----CCCCHHHHHHHHhcc--CCCcEEEEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 63 CSQAAVALDILRERKGCFDVVLSDVHM-----PDMDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVILDi~M-----PdmDGleLl~~Lr~~--~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
+.+.++|..+.+ . ..|.|.+.-+- .+...++++..++.. ..+|||.-.+-.+...+.+++..||+....=
T Consensus 180 v~s~~~a~~a~~-~--G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 180 ILTPEDALRAVD-A--GADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIG 256 (299)
T ss_pred cCCHHHHHHHHH-C--CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 456666655443 2 37877775432 123456777777542 2699999888889999999999999987553
No 365
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=22.96 E-value=4.5e+02 Score=28.54 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=38.9
Q ss_pred cEEEEEeCCHHHH----HHHHHHHHhCCceEEEEC------C---HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006775 34 LRVLVVDDDITCL----RILEQMLRRCLYNVTTCS------Q---AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (632)
Q Consensus 34 lrVLIVDDd~~~r----~~L~~lL~~~gy~V~~a~------s---g~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~ 100 (632)
-|+|||-|..... +.+...|+..++.+..+. + ..++++.+++. .+|+||- +.+..-+++.+.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~Iia---iGGGs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREE--GCDGVIA---VGGGSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHHH
Confidence 3788888765433 467777776666554432 2 33555666554 3898764 456666777776
Q ss_pred H
Q 006775 101 I 101 (632)
Q Consensus 101 L 101 (632)
+
T Consensus 99 v 99 (370)
T cd08551 99 I 99 (370)
T ss_pred H
Confidence 5
No 366
>PLN02823 spermine synthase
Probab=22.82 E-value=1.8e+02 Score=31.79 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=37.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-----CceE-EEECCHHHHHHHHHHcCCCceEEEEecCCC
Q 006775 34 LRVLVVDDDITCLRILEQMLRRC-----LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~-----gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MP 90 (632)
.+|.+||=|+.+.+..++.+... .-.+ ....++.+.+ +.....+|+||+|+--|
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEKFDVIIGDLADP 187 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCCccEEEecCCCc
Confidence 57999999999999999887532 1122 2455555544 44444699999997444
No 367
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.74 E-value=2.2e+02 Score=35.45 Aligned_cols=72 Identities=18% Similarity=0.336 Sum_probs=48.8
Q ss_pred CceEEEEe-cCCCCCCHHHH-HHHHhccC-CCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 79 CFDVVLSD-VHMPDMDGFKL-LEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 79 ~pDLVILD-i~MPdmDGleL-l~~Lr~~~-~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
.+-|+|+| ++|-..+.++. ++.|...+ .+.+|+.|.. ...+...+...+.-|-.||++.+++...+++++..
T Consensus 119 k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe--~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC--chhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 47899998 66655555554 44444322 3556665543 33355666667788999999999999999988765
No 368
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=22.70 E-value=3.9e+02 Score=27.68 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=43.6
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCc----eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHH-HHHHHHh
Q 006775 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLY----NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF-KLLEHIG 102 (632)
Q Consensus 28 ~~~p~glrVLIVDDd~~~r~~L~~lL~~~gy----~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGl-eLl~~Lr 102 (632)
+....+--|-|++|+.. +...+..|...+. ++......++++..+. ..|.+++|... .|-. ++++.++
T Consensus 65 Ar~TgGR~vCIvp~~~~-~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~----~iDF~vVDc~~--~d~~~~vl~~~~ 137 (218)
T PF07279_consen 65 ARQTGGRHVCIVPDEQS-LSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK----GIDFVVVDCKR--EDFAARVLRAAK 137 (218)
T ss_pred HHhcCCeEEEEcCChhh-HHHHHHHHhhccccccceEEecCCHHHHHhhcc----CCCEEEEeCCc--hhHHHHHHHHhc
Confidence 33344444556666555 4455555554432 3444444666665542 48999999985 3444 6777666
Q ss_pred ccCCCcEEE
Q 006775 103 LEMDLPVIM 111 (632)
Q Consensus 103 ~~~~iPIIv 111 (632)
..+.--||+
T Consensus 138 ~~~~GaVVV 146 (218)
T PF07279_consen 138 LSPRGAVVV 146 (218)
T ss_pred cCCCceEEE
Confidence 544444544
No 369
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=22.62 E-value=8.1e+02 Score=24.80 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHH
Q 006775 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 145 (632)
Q Consensus 66 g~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~ 145 (632)
..+..+.+.. .|++++-....+.-|+.+++.+. ..+|||..-. +. ..+.+..|..+++..+ .++|..+
T Consensus 234 ~~~~~~~~~~----~d~~v~ps~~~E~~~~~~lEAma--~G~PvI~~~~-~~---~~e~i~~~~~g~l~~~--~~~l~~~ 301 (335)
T cd03802 234 GAEKAELLGN----ARALLFPILWEEPFGLVMIEAMA--CGTPVIAFRR-GA---VPEVVEDGVTGFLVDS--VEELAAA 301 (335)
T ss_pred HHHHHHHHHh----CcEEEeCCcccCCcchHHHHHHh--cCCCEEEeCC-CC---chhheeCCCcEEEeCC--HHHHHHH
Confidence 4444555543 57777654434455777777764 4578875432 22 2345667888999987 8888888
Q ss_pred HHHHH
Q 006775 146 WQHVV 150 (632)
Q Consensus 146 L~~vl 150 (632)
+..+.
T Consensus 302 l~~l~ 306 (335)
T cd03802 302 VARAD 306 (335)
T ss_pred HHHHh
Confidence 87663
No 370
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=22.59 E-value=4.9e+02 Score=29.70 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=45.8
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCC
Q 006775 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGAC 130 (632)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVILDi~MPd-------mDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~ 130 (632)
..+.+.+++.+.... .+|.|.+.-..|. .-|++.++++.....+||+.+-+- +.+.+.++++.|++
T Consensus 395 ~S~h~~~e~~~a~~~---gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI-~~~~~~~~~~~G~~ 467 (502)
T PLN02898 395 VSCKTPEQAEQAWKD---GADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGI-SASNAASVMESGAP 467 (502)
T ss_pred EeCCCHHHHHHHhhc---CCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCC-CHHHHHHHHHcCCC
Confidence 356777776655432 4888875433332 127888998876678999988654 46777888999988
No 371
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=22.58 E-value=4.3e+02 Score=29.23 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=44.0
Q ss_pred ceEEEEecCCCCCCHH-HHHHHHhccCCCcEEEEec-cCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Q 006775 80 FDVVLSDVHMPDMDGF-KLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (632)
Q Consensus 80 pDLVILDi~MPdmDGl-eLl~~Lr~~~~iPIIvLSa-~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vl 150 (632)
.+.+|++..-...=-+ .++..+ .....|+.... ..+.....+.++.|+++.+.+|-++.++++....+-
T Consensus 89 ~~~viv~~~dW~iIPlEnlIA~~--~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~~ 159 (344)
T PRK02290 89 VDYVIVEGRDWTIIPLENLIADL--GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALIE 159 (344)
T ss_pred CCEEEEECCCCcEecHHHHHhhh--cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHHh
Confidence 4667766543322122 244444 34455555443 344556677889999999999999999988776553
No 372
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=22.50 E-value=8.8e+02 Score=25.17 Aligned_cols=76 Identities=11% Similarity=0.024 Sum_probs=39.2
Q ss_pred cEEEEEeCCH----HHHHHHHHHHHhCCceEEE-------ECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006775 34 LRVLVVDDDI----TCLRILEQMLRRCLYNVTT-------CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (632)
Q Consensus 34 lrVLIVDDd~----~~r~~L~~lL~~~gy~V~~-------a~sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr 102 (632)
-||.++.++. .....++..+++.+.+|.. ..+....+..++.. .+|+|++.. .+.+...+++.++
T Consensus 142 ~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~--~~d~i~~~~--~~~~~~~~~~~~~ 217 (345)
T cd06338 142 KKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAA--GPDAVVVAG--HFPDAVLLVRQMK 217 (345)
T ss_pred ceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhc--CCCEEEECC--cchhHHHHHHHHH
Confidence 3454444432 2344556666666666542 12334445555543 378887754 2335666677765
Q ss_pred c-cCCCcEEEEe
Q 006775 103 L-EMDLPVIMMS 113 (632)
Q Consensus 103 ~-~~~iPIIvLS 113 (632)
. ....+++..+
T Consensus 218 ~~g~~~~~~~~~ 229 (345)
T cd06338 218 ELGYNPKALYMT 229 (345)
T ss_pred HcCCCCCEEEEe
Confidence 3 2345555443
No 373
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=22.49 E-value=3.2e+02 Score=29.83 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=41.2
Q ss_pred ceEEEEecCCCC-CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 80 FDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 80 pDLVILDi~MPd-mDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
.|+|++|..=.. ..-++.+++|+.....|+|+.-.-...+.+..++++||+.+..-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 699999984332 34567888887665566666555678888999999999988643
No 374
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.28 E-value=3.8e+02 Score=28.24 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=59.7
Q ss_pred ccEEEEEeC-CHHHHHHHHHHHHhCCceEE---EECCHHHHHHHHHHcCCCceEEEEecCCCCCC---------HHHHHH
Q 006775 33 GLRVLVVDD-DITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPDMD---------GFKLLE 99 (632)
Q Consensus 33 glrVLIVDD-d~~~r~~L~~lL~~~gy~V~---~a~sg~eALe~L~e~~~~pDLVILDi~MPdmD---------GleLl~ 99 (632)
+..-+||-| -..-...+...+++.+...+ .-++..+-++.+.+....|=.++. .++.. -.++++
T Consensus 119 GvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS---~~GvTG~~~~~~~~~~~~i~ 195 (263)
T CHL00200 119 GVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVS---TTGVTGLKTELDKKLKKLIE 195 (263)
T ss_pred CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEc---CCCCCCCCccccHHHHHHHH
Confidence 344444444 44445556666777665432 233344555555544322333333 23322 245566
Q ss_pred HHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCC
Q 006775 100 HIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 100 ~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
++|+..+.||.+=-+-.+.+.+.++.++|||+.+.-.
T Consensus 196 ~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 196 TIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 6777678899885566678888888899999999874
No 375
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=22.25 E-value=40 Score=38.60 Aligned_cols=42 Identities=7% Similarity=0.007 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhh-hhhcCCCccccccccccccccCcCcc
Q 006775 266 SHLQKFRLYLKRLNGV-SQQGGITNSFCAPIETNVKLGSLGRF 307 (632)
Q Consensus 266 SHLqRvr~ylk~L~~~-A~~~Gls~~~~e~i~~AspLHDiGKi 307 (632)
.|-++|..++..|... ....++++..-..+..|+.|||||+.
T Consensus 325 ~ha~~v~~~a~~Lf~~l~~~~~l~~~~~~LL~~Aa~LhdiG~~ 367 (496)
T PRK11031 325 EQAQRVAKLADNFLQQVENEWHLEPRSRELLISACQLHEIGLS 367 (496)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHhcCCc
Confidence 3555666665555322 22347888888899999999999997
No 376
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=22.13 E-value=3.6e+02 Score=31.23 Aligned_cols=64 Identities=19% Similarity=0.120 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHhcCCCEEEe
Q 006775 67 AVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (632)
Q Consensus 67 ~eALe~L~e~~~~pDLVILDi~MPdm--DGleLl~~Lr~~-~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~ 134 (632)
.+-.+.|.+. ..|+|.+|.-- +. .-++++++||.. ++++||+ ..-...+.+..++++||+....
T Consensus 250 ~~r~~~l~~a--g~d~i~iD~~~-g~~~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 250 KERLEHLVKA--GVDVVVLDSSQ-GDSIYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred HHHHHHHHHc--CCCEEEEeCCC-CCcHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 3333444443 49999999832 22 235889999754 5666654 3345667788999999998754
No 377
>PF13487 HD_5: HD domain; PDB: 3TMD_A 3TM8_B 3TMC_A 3TMB_B.
Probab=22.13 E-value=50 Score=26.87 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=12.3
Q ss_pred CCCChHHHHHHHHh-hcC
Q 006775 316 GQIPPQTLAALHAE-LLG 332 (632)
Q Consensus 316 GkL~~ee~~imq~~-~iG 332 (632)
|+||++||++++.| ..|
T Consensus 1 G~Lt~~e~~~~~~Hp~~~ 18 (64)
T PF13487_consen 1 GKLTPEEREIIQQHPEYG 18 (64)
T ss_dssp -GS-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 78999999999984 334
No 378
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.04 E-value=1.8e+02 Score=28.94 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=35.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIL 85 (632)
|||+|||-.......+...|++.|+++....+..+ + ..+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~----~~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----I----LDADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----H----ccCCEEEE
Confidence 68999999988889999999999999888765422 2 13898887
No 379
>CHL00101 trpG anthranilate synthase component 2
Probab=21.93 E-value=1.2e+02 Score=29.93 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=34.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEE
Q 006775 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (632)
Q Consensus 36 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVIL 85 (632)
|||||-....-..+.+.|+..+..+..+......+..+... .||.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNL--NIRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhC--CCCEEEE
Confidence 89999999999999999999888877766443122222222 3887776
No 380
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=21.81 E-value=8.6e+02 Score=25.90 Aligned_cols=94 Identities=14% Similarity=0.091 Sum_probs=55.7
Q ss_pred EeCCHHHHHHHHHHHHhCCceEEE-E-----C---CHHHHHHHHHHcCCCceEEEEecCCC-----CCCHHHHHHHHhcc
Q 006775 39 VDDDITCLRILEQMLRRCLYNVTT-C-----S---QAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLE 104 (632)
Q Consensus 39 VDDd~~~r~~L~~lL~~~gy~V~~-a-----~---sg~eALe~L~e~~~~pDLVILDi~MP-----dmDGleLl~~Lr~~ 104 (632)
..+-....+.++.+-+..++.|.. . . +..+..+.+.+. ..|.|.+.-... +..-++.++.++..
T Consensus 113 ~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~--G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~ 190 (319)
T TIGR00737 113 LRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDA--GAQAVTLHGRTRAQGYSGEANWDIIARVKQA 190 (319)
T ss_pred hCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHh--CCCEEEEEcccccccCCCchhHHHHHHHHHc
Confidence 344455555555554444433321 1 1 123333444443 367776653322 11237778888776
Q ss_pred CCCcEEEEeccCCHHHHHHHH-hcCCCEEEe
Q 006775 105 MDLPVIMMSADGRVSAVMRGI-RHGACDYLI 134 (632)
Q Consensus 105 ~~iPIIvLSa~~d~e~~~eAl-~~GA~DYL~ 134 (632)
..+|||...+-.+.+.+.+++ ..||+....
T Consensus 191 ~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 191 VRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 779999988888999999999 567887643
No 381
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=21.81 E-value=3.9e+02 Score=27.91 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=41.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCc--eE-EEECCHHHHHHHHHHc---CCCceEEEEecC
Q 006775 33 GLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRER---KGCFDVVLSDVH 88 (632)
Q Consensus 33 glrVLIVDDd~~~r~~L~~lL~~~gy--~V-~~a~sg~eALe~L~e~---~~~pDLVILDi~ 88 (632)
.-+|.-+|-++...+.-+..++..|+ .| ....++.+.+..+... ...||+||+|..
T Consensus 104 ~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 104 DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 45899999999999988999988764 23 3456666766665432 236999999976
No 382
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=21.63 E-value=6.7e+02 Score=27.24 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=39.4
Q ss_pred HHHHHHHhccC--CCcEEEEeccCCHHHHHHHHhcCCCEE------EeC-CCCHHHHHHHHHHHHH
Q 006775 95 FKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDY------LIK-PIREEELKNIWQHVVR 151 (632)
Q Consensus 95 leLl~~Lr~~~--~iPIIvLSa~~d~e~~~eAl~~GA~DY------L~K-P~~~eeL~~~L~~vlr 151 (632)
++.++.++... ++|||...+-.+.+.+.+.+.+||+.. +.+ |.-..++.+-+.+.++
T Consensus 276 l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 276 TEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR 341 (344)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 34556665443 699999999999999999999999753 344 5555555555555443
No 383
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=21.61 E-value=2.8e+02 Score=34.16 Aligned_cols=72 Identities=19% Similarity=0.367 Sum_probs=49.2
Q ss_pred CceEEEEe-cCCCCCCHHH-HHHHHhccC-CCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 006775 79 CFDVVLSD-VHMPDMDGFK-LLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (632)
Q Consensus 79 ~pDLVILD-i~MPdmDGle-Ll~~Lr~~~-~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk 152 (632)
.+.|+|+| ++|-...++. |++.|.+.+ .+.+|++|. +.+.+...++.-+.-|-.++++.++|...|.+++++
T Consensus 120 ~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt--~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT--EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred CceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC--ChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 47888888 5655555655 455555433 455666663 334466677777788889999999999988887754
No 384
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=21.52 E-value=4.5e+02 Score=28.60 Aligned_cols=63 Identities=22% Similarity=0.185 Sum_probs=40.4
Q ss_pred cEEEEEeCCHH-HHHHHHHHHHhCCceEEEEC---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH
Q 006775 34 LRVLVVDDDIT-CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 34 lrVLIVDDd~~-~r~~L~~lL~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~L 101 (632)
-|+|||-|... ....+...|+..+..+..+. +..++.+.+++.. +|+||- +.+..-+++.+.+
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGs~~D~aK~i 96 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFG--PDAVLA---VGGGSVLDTAKAL 96 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcC--cCEEEE---eCCcHHHHHHHHH
Confidence 37888877654 45667788877666554432 3446666666654 898764 4566666766665
No 385
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=21.51 E-value=5.1e+02 Score=26.07 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=52.2
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEecCCCC---CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCC
Q 006775 63 CSQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (632)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVILDi~MPd---mDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP 136 (632)
..+..++.+.+.... .-.++++|+.--+ ..-+++++++.....+|+++=.+-.+.+.+.+++..|++..+.-.
T Consensus 29 ~~dp~~~a~~~~~~g-~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~ 104 (232)
T TIGR03572 29 IGDPVNAARIYNAKG-ADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINT 104 (232)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 347777777775543 2258899987643 234677888876677899887777788888888899988776653
No 386
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=21.39 E-value=7.2e+02 Score=26.78 Aligned_cols=95 Identities=11% Similarity=0.089 Sum_probs=57.7
Q ss_pred EEeCCHHHHHHHHHHHHhCCceEEE------ECC---HHHHHHHHHHcCCCceEEEEecCC-C----CCCHHHHHHHHhc
Q 006775 38 VVDDDITCLRILEQMLRRCLYNVTT------CSQ---AAVALDILRERKGCFDVVLSDVHM-P----DMDGFKLLEHIGL 103 (632)
Q Consensus 38 IVDDd~~~r~~L~~lL~~~gy~V~~------a~s---g~eALe~L~e~~~~pDLVILDi~M-P----dmDGleLl~~Lr~ 103 (632)
+..|.....+.++.+-....+.|.. ..+ ..+..+.+.+. ..|.|.+.-.. + +...+++++++++
T Consensus 114 ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~--G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~ 191 (321)
T PRK10415 114 LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC--GIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 (321)
T ss_pred HhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh--CCCEEEEecCccccccCCCcChHHHHHHHH
Confidence 4445555666666665544333321 122 22333344433 36777655332 1 2234888899887
Q ss_pred cCCCcEEEEeccCCHHHHHHHHh-cCCCEEEe
Q 006775 104 EMDLPVIMMSADGRVSAVMRGIR-HGACDYLI 134 (632)
Q Consensus 104 ~~~iPIIvLSa~~d~e~~~eAl~-~GA~DYL~ 134 (632)
...+|||..-+-.+.+.+.++++ .|++....
T Consensus 192 ~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 192 KVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred hcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 77899999888888888999996 68887643
No 387
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=21.38 E-value=4.5e+02 Score=28.43 Aligned_cols=75 Identities=9% Similarity=0.115 Sum_probs=46.3
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCceEEEEC---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH
Q 006775 34 LRVLVVDDDITC---LRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (632)
Q Consensus 34 lrVLIVDDd~~~---r~~L~~lL~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~L 101 (632)
-|+|||-|.... .+.+...|+..+..+..+. +..++.+..++. .+|+||- +.+..-+++.+.+
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~iia---vGGGs~~D~aK~i 97 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQ--EADMIFA---VGGGKAIDTVKVL 97 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhc--CCCEEEE---eCCcHHHHHHHHH
Confidence 588988886543 3455666766555443221 233455555544 4898875 5677778888887
Q ss_pred hccCCCcEEEEe
Q 006775 102 GLEMDLPVIMMS 113 (632)
Q Consensus 102 r~~~~iPIIvLS 113 (632)
.....+|+|.+-
T Consensus 98 a~~~~~p~i~VP 109 (345)
T cd08171 98 ADKLGKPVFTFP 109 (345)
T ss_pred HHHcCCCEEEec
Confidence 654567877663
No 388
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=21.29 E-value=2.8e+02 Score=29.28 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=50.4
Q ss_pred CCceEEEECCHH-----HHH---H-HHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHh
Q 006775 56 CLYNVTTCSQAA-----VAL---D-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR 126 (632)
Q Consensus 56 ~gy~V~~a~sg~-----eAL---e-~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~ 126 (632)
.+..+..+.++. ++- . .+++.. ||++|+=-=-|..-|-.-.+.+-...++|.|+++........ ++++
T Consensus 30 edI~vrv~gsGaKm~pe~~~~~~~~~~~~~~--pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~-d~l~ 106 (277)
T PRK00994 30 EDIDVRVVGSGAKMGPEEVEEVVKKMLEEWK--PDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVK-DAME 106 (277)
T ss_pred cCceEEEeccCCCCCHHHHHHHHHHHHHhhC--CCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchH-HHHH
Confidence 356666666543 222 2 334444 898887543344556666676655678899999987776644 7787
Q ss_pred cCCCEEEeCCCC
Q 006775 127 HGACDYLIKPIR 138 (632)
Q Consensus 127 ~GA~DYL~KP~~ 138 (632)
..-.+|+.-+.+
T Consensus 107 ~~g~GYIivk~D 118 (277)
T PRK00994 107 EQGLGYIIVKAD 118 (277)
T ss_pred hcCCcEEEEecC
Confidence 767777765543
No 389
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=21.15 E-value=3.6e+02 Score=32.29 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=59.7
Q ss_pred hhHHHHHHHcCC-CCCCCcccccccCCCCCCCccEEEEEeCCHHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCc
Q 006775 2 AALQRIVQSSGG-SGYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCF 80 (632)
Q Consensus 2 aI~~~lv~~mGG-~g~Gs~~~~~~~~p~~~p~glrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~p 80 (632)
+..+|+++.||+ -|.-.+++.++.- .-...-||-..-|--..|+.+..-+.. . |
T Consensus 110 slA~RVAeE~~~~lG~~VGY~IRFed--~ts~~TrikymTDG~LLRE~l~Dp~Ls-k----------------------Y 164 (674)
T KOG0922|consen 110 SLAKRVAEEMGCQLGEEVGYTIRFED--STSKDTRIKYMTDGMLLREILKDPLLS-K----------------------Y 164 (674)
T ss_pred HHHHHHHHHhCCCcCceeeeEEEecc--cCCCceeEEEecchHHHHHHhcCCccc-c----------------------c
Confidence 467899999999 4555555555422 222356788888877666555443322 2 4
Q ss_pred eEEEEecCCC-C--CC-HHHHHHHH-hccCCCcEEEEeccCCHHHHHHHHhc
Q 006775 81 DVVLSDVHMP-D--MD-GFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRH 127 (632)
Q Consensus 81 DLVILDi~MP-d--mD-GleLl~~L-r~~~~iPIIvLSa~~d~e~~~eAl~~ 127 (632)
++||+|-.=. . .| -+.|+++| +..+++++|++|+.-+.+...+.|..
T Consensus 165 svIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~ 216 (674)
T KOG0922|consen 165 SVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNN 216 (674)
T ss_pred cEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcC
Confidence 4444442111 0 11 24566665 45567888888888777776666643
No 390
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=21.12 E-value=4e+02 Score=29.56 Aligned_cols=63 Identities=17% Similarity=0.126 Sum_probs=41.0
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCceEEEEC---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006775 34 LRVLVVDDDITC----LRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (632)
Q Consensus 34 lrVLIVDDd~~~----r~~L~~lL~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~ 100 (632)
-++|||.|.... .+.+...|++.+..+..+. ...++.+.+++.. +|+||- +.+.+-++..|.
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~--~D~Iia---vGGGS~iD~AKa 124 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESG--CDGVIA---FGGGSVLDAAKA 124 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcC--cCEEEE---eCChHHHHHHHH
Confidence 478888775332 3457777877776665442 3456777777654 998875 556666777666
Q ss_pred H
Q 006775 101 I 101 (632)
Q Consensus 101 L 101 (632)
+
T Consensus 125 i 125 (395)
T PRK15454 125 V 125 (395)
T ss_pred H
Confidence 5
No 391
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=21.03 E-value=8.2e+02 Score=24.21 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHH
Q 006775 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (632)
Q Consensus 67 ~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L 146 (632)
++..+++.. .|++|.-... +.-|..+++.+. ..+|||.... .. ..+.+..+-.+++..+.+.+++.+.+
T Consensus 267 ~~~~~~~~~----~di~i~~~~~-~~~~~~~~Ea~~--~g~pvI~~~~-~~---~~~~~~~~~~g~~~~~~~~~~l~~~i 335 (374)
T cd03801 267 EDLPALYAA----ADVFVLPSLY-EGFGLVLLEAMA--AGLPVVASDV-GG---IPEVVEDGETGLLVPPGDPEALAEAI 335 (374)
T ss_pred hhHHHHHHh----cCEEEecchh-ccccchHHHHHH--cCCcEEEeCC-CC---hhHHhcCCcceEEeCCCCHHHHHHHH
Confidence 444444432 4665543322 333455666553 4577765432 22 23445557888999999999999999
Q ss_pred HHHHH
Q 006775 147 QHVVR 151 (632)
Q Consensus 147 ~~vlr 151 (632)
..++.
T Consensus 336 ~~~~~ 340 (374)
T cd03801 336 LRLLD 340 (374)
T ss_pred HHHHc
Confidence 88764
No 392
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=20.93 E-value=5e+02 Score=28.55 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=39.9
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHHhCCceEEEEC---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHH
Q 006775 34 LRVLVVDDDITC-----LRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (632)
Q Consensus 34 lrVLIVDDd~~~-----r~~L~~lL~~~gy~V~~a~---------sg~eALe~L~e~~~~pDLVILDi~MPdmDGleLl~ 99 (632)
-|+|||-|.... .+.+...|+..+.++..+. +..++.+.+++.. +|+||- ..+..-+++.+
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~aK 101 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFG--AQAVIA---IGGGSPIDSAK 101 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcC--CCEEEE---eCCccHHHHHH
Confidence 378988887543 3567788887776665553 2335666666554 898774 34555666665
Q ss_pred HH
Q 006775 100 HI 101 (632)
Q Consensus 100 ~L 101 (632)
.+
T Consensus 102 ~i 103 (383)
T cd08186 102 SA 103 (383)
T ss_pred HH
Confidence 54
No 393
>PRK03612 spermidine synthase; Provisional
Probab=20.73 E-value=3.7e+02 Score=31.03 Aligned_cols=55 Identities=27% Similarity=0.245 Sum_probs=35.5
Q ss_pred cEEEEEeCCHHHHHHHHH--HHHhC------CceE-EEECCHHHHHHHHHHcCCCceEEEEecCCCC
Q 006775 34 LRVLVVDDDITCLRILEQ--MLRRC------LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~--lL~~~------gy~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPd 91 (632)
-+|.+||=|+.+.+..++ .+... .-.+ ....|+.+.+ +.....+|+||+|..-|.
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l---~~~~~~fDvIi~D~~~~~ 385 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWL---RKLAEKFDVIIVDLPDPS 385 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHH---HhCCCCCCEEEEeCCCCC
Confidence 589999999999998887 33321 1123 2445555444 333346999999975554
No 394
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.51 E-value=5.5e+02 Score=26.65 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=53.4
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEecCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeC
Q 006775 63 CSQAAVALDILRERKGCFDVVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (632)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVILDi~MPdm---DGleLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~K 135 (632)
..+..+..+.+.... --.++++|+.-.++ .-+++++++.....+||++=.+-.+.+.+.+++..|++.++.-
T Consensus 29 ~~dp~~~a~~~~~~g-~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 29 IGDPINAVRIFNEKE-VDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 346777666666543 23689999976642 3478899997667899988777778888888899999987764
No 395
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=20.41 E-value=1.1e+03 Score=26.09 Aligned_cols=80 Identities=16% Similarity=0.024 Sum_probs=47.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCc-eE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCC-HHHHHHHHhccCCCcEE
Q 006775 34 LRVLVVDDDITCLRILEQMLRRCLY-NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLEMDLPVI 110 (632)
Q Consensus 34 lrVLIVDDd~~~r~~L~~lL~~~gy-~V-~~a~sg~eALe~L~e~~~~pDLVILDi~MPdmD-GleLl~~Lr~~~~iPII 110 (632)
-+|+-||-++...+..+..+...+. .+ ....+..+.+..+......+|+||+|- |... ..++++.+.....-.+|
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP--Pr~G~~~~~l~~l~~l~~~~iv 392 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP--PRKGCAAEVLRTIIELKPERIV 392 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc--CCCCCCHHHHHHHHhcCCCEEE
Confidence 3799999999998888887776553 22 345566665443222122489999984 3221 35666766432223455
Q ss_pred EEecc
Q 006775 111 MMSAD 115 (632)
Q Consensus 111 vLSa~ 115 (632)
.++..
T Consensus 393 yvsc~ 397 (431)
T TIGR00479 393 YVSCN 397 (431)
T ss_pred EEcCC
Confidence 55543
No 396
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.31 E-value=5.3e+02 Score=27.22 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=39.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhc--c--CCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 006775 79 CFDVVLSDVHMPDMDGFKLLEHIGL--E--MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 79 ~pDLVILDi~MPdmDGleLl~~Lr~--~--~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~ 154 (632)
.+|+||+ -+.||. +++.++. . ..+||+-+- .|-.+||. .++++++...+.++++..+
T Consensus 35 ~~Dlvi~----iGGDGT-~L~a~~~~~~~~~~iPilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~y 95 (265)
T PRK04885 35 NPDIVIS----VGGDGT-LLSAFHRYENQLDKVRFVGVH-------------TGHLGFYT-DWRPFEVDKLVIALAKDPG 95 (265)
T ss_pred CCCEEEE----ECCcHH-HHHHHHHhcccCCCCeEEEEe-------------CCCceecc-cCCHHHHHHHHHHHHcCCc
Confidence 3788877 366773 3344432 2 578877554 47788999 5888999999999887543
No 397
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.22 E-value=1.1e+03 Score=25.60 Aligned_cols=102 Identities=24% Similarity=0.303 Sum_probs=59.0
Q ss_pred cEEEEEeC--CHH---HHHHHHHHHHhCCceEEEECCHHHHHHH----------------HHHcCCCceEEEEecCCCCC
Q 006775 34 LRVLVVDD--DIT---CLRILEQMLRRCLYNVTTCSQAAVALDI----------------LRERKGCFDVVLSDVHMPDM 92 (632)
Q Consensus 34 lrVLIVDD--d~~---~r~~L~~lL~~~gy~V~~a~sg~eALe~----------------L~e~~~~pDLVILDi~MPdm 92 (632)
.+|+|+-. .+. ....+...|...++++.........+.. .......+|+||+ -+.
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGG 81 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGG 81 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcC
Confidence 35777732 233 3445555666678877765543322210 0111113677666 266
Q ss_pred CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 006775 93 DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (632)
Q Consensus 93 DG--leLl~~Lr~~~~iPIIvLSa~~d~e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~vlrk~~ 154 (632)
|| +..++.+. ...+||+-+- .|-.+||.- +.++++...+.++++..+
T Consensus 82 DGT~L~aar~~~-~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 82 DGTILRAAELAR-AADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRDY 130 (306)
T ss_pred CHHHHHHHHHhc-cCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCCc
Confidence 77 33333332 3568887654 366788884 778999999999987654
No 398
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=20.22 E-value=55 Score=28.64 Aligned_cols=23 Identities=43% Similarity=0.796 Sum_probs=13.8
Q ss_pred cccCccccccCCCcccccccccc
Q 006775 431 PSRSSASFQAGNSPASVNQSCSF 453 (632)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~ 453 (632)
|....++|.||.+++.|.|+|.-
T Consensus 36 p~~~~a~fPAg~~~~DieqaCa~ 58 (80)
T PF11895_consen 36 PLTGKAHFPAGKSPADIEQACAS 58 (80)
T ss_dssp S-SSSSEBGTT--GGGB--S-SS
T ss_pred CCCCCcccCCCCCHHHHHhhccC
Confidence 44555999999999999999943
No 399
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=20.16 E-value=6.9e+02 Score=27.64 Aligned_cols=92 Identities=10% Similarity=0.038 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhCCceEEEECCHHHHHHHHHHcCCCceEEEEecCCCCC----CHHHHHHHHhc-cCCCcEEEEeccCCH
Q 006775 44 TCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM----DGFKLLEHIGL-EMDLPVIMMSADGRV 118 (632)
Q Consensus 44 ~~r~~L~~lL~~~gy~V~~a~sg~eALe~L~e~~~~pDLVILDi~MPdm----DGleLl~~Lr~-~~~iPIIvLSa~~d~ 118 (632)
.-.+.+...|...||+.+.. ..++|+|++....... ..+++++.++. .++.+||+--.+..
T Consensus 11 ~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~- 76 (414)
T TIGR01579 11 YESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQ- 76 (414)
T ss_pred HHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCccc-
Confidence 34466777887778875421 1248999998654432 36778888764 45555554433333
Q ss_pred HHHHHHHhcCCCEEEeCCCCHHHHHHHHHHH
Q 006775 119 SAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (632)
Q Consensus 119 e~~~eAl~~GA~DYL~KP~~~eeL~~~L~~v 149 (632)
....++.++...|++.-+-....+...+...
T Consensus 77 ~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 77 SNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred cCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 3333445566678888887777777777644
Done!