BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006776
(631 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/625 (53%), Positives = 432/625 (69%), Gaps = 10/625 (1%)
Query: 2 YKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDR 61
YK+S+ DP FW + W + Q+V +N GNV I+W++ G N+ NCLDR
Sbjct: 28 YKQSINDPDTFWGEQGKILDWITPY-QKV--KNTSFAPGNVSIKWYEDGTLNLAANCLDR 84
Query: 62 NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM 121
+++ GD+ AI WE +D ++Y +L + VC+ AN L D+G+KKGD V IY+PM+
Sbjct: 85 HLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVP 143
Query: 122 ELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVD 181
E +AMLACARIGAVHSV+F GFS +++A RI+D ++VIT++ R ++I LK VD
Sbjct: 144 EAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVD 203
Query: 182 AALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED 241
AL + + + L T + WQ+GRD+WW+D++ K + + E ++AED
Sbjct: 204 DALKNPNVTSVEHVIVLK------RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAED 257
Query: 242 PLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 301
PLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P D+YWCTAD GW+TGHSY+
Sbjct: 258 PLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLL 317
Query: 302 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 361
YGP+ GA+ ++FEG P +P R +VDK++V I YTAPT +R+LM +G++ + R
Sbjct: 318 YGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDR 377
Query: 362 KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 421
SLR+LGSVGEPINP AW W++ +G +CP+ DTWWQTETGGFMITPLPGA K GSA
Sbjct: 378 SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA 437
Query: 422 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF 481
T PFFGVQP +VD +G EG G L I SWPG RTL+GDHER+E TYF F YF
Sbjct: 438 TRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 497
Query: 482 TGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQ 541
+GDG RD+DGY+W+TGRVDDV+NVSGHR+GTAE+ESALV+HP+ KGQ
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 542 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601
IYA+VTL G S EL + VRK+IG A PD +HW LPKTRSGKIMRRILRK
Sbjct: 558 AIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRK 617
Query: 602 IASRQLDELGDTSTLADPGVVDQLI 626
IA+ LGDTSTLADPGVV++L+
Sbjct: 618 IAAGDTSNLGDTSTLADPGVVEKLL 642
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/625 (53%), Positives = 431/625 (68%), Gaps = 10/625 (1%)
Query: 2 YKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDR 61
YK+S+ DP FW + W + Q+V +N GNV I+W++ G N+ NCLDR
Sbjct: 28 YKQSINDPDTFWGEQGKILDWITPY-QKV--KNTSFAPGNVSIKWYEDGTLNLAANCLDR 84
Query: 62 NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM 121
+++ GD+ AI WE +D ++Y +L + VC+ AN L D+G+KKGD V IY+PM+
Sbjct: 85 HLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVP 143
Query: 122 ELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVD 181
E +AMLACARIGAVHSV+F GFS +++A RI+D ++VIT++ R ++I LK VD
Sbjct: 144 EAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVD 203
Query: 182 AALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED 241
AL + + + L T + WQ+GRD+WW+D++ K + + E ++AED
Sbjct: 204 DALKNPNVTSVEHVIVLK------RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAED 257
Query: 242 PLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 301
PLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P D+YWCTAD GW+TGHSY+
Sbjct: 258 PLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLL 317
Query: 302 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 361
YGP+ GA+ ++FEG P +P R +VDK++V I YTAPT +R+LM +G++ + R
Sbjct: 318 YGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDR 377
Query: 362 KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 421
SLR+LGS GEPINP AW W++ +G +CP+ DTWWQTETGGFMITPLPGA K GSA
Sbjct: 378 SSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA 437
Query: 422 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF 481
T PFFGVQP +VD +G EG G L I SWPG RTL+GDHER+E TYF F YF
Sbjct: 438 TRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 497
Query: 482 TGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQ 541
+GDG RD+DGY+W+TGRVDDV+NVSGHR+GTAE+ESALV+HP+ KGQ
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 542 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601
IYA+VTL G S EL + VRK+IG A PD +HW LPKTRSGKIMRRILRK
Sbjct: 558 AIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRK 617
Query: 602 IASRQLDELGDTSTLADPGVVDQLI 626
IA+ LGDTSTLADPGVV++L+
Sbjct: 618 IAAGDTSNLGDTSTLADPGVVEKLL 642
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/625 (53%), Positives = 431/625 (68%), Gaps = 10/625 (1%)
Query: 2 YKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDR 61
YK+S+ DP FW + W + Q+V +N GNV I+W++ G N+ NCLDR
Sbjct: 28 YKQSINDPDTFWGEQGKILDWITPY-QKV--KNTSFAPGNVSIKWYEDGTLNLAANCLDR 84
Query: 62 NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM 121
+++ GD+ AI WE +D ++Y +L + VC+ AN L D+G+KKGD V IY+PM+
Sbjct: 85 HLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVP 143
Query: 122 ELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVD 181
E +AMLACARIGAVHSV+F GFS +++A RI+D ++VIT++ R +I LK VD
Sbjct: 144 EAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVD 203
Query: 182 AALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED 241
AL + + + L T + WQ+GRD+WW+D++ K + + E ++AED
Sbjct: 204 DALKNPNVTSVEHVIVLK------RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAED 257
Query: 242 PLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 301
PLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P D+YWCTAD GW+TGHSY+
Sbjct: 258 PLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLL 317
Query: 302 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 361
YGP+ GA+ ++FEG P +P R +VDK++V I YTAPT +R+LM +G++ + R
Sbjct: 318 YGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDR 377
Query: 362 KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 421
SLR+LGSVGEPINP AW W++ +G +CP+ DTWWQTETGGFMITPLPGA K GSA
Sbjct: 378 SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA 437
Query: 422 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF 481
T PFFGVQP +VD +G EG G L I SWPG RTL+GDHER+E TYF F YF
Sbjct: 438 TRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 497
Query: 482 TGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQ 541
+GDG RD+DGY+W+TGRVDDV+NVSGHR+GTAE+ESALV+HP+ KGQ
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 542 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601
IYA+VTL G S EL + VRK+IG A PD +HW LPKTRSGKIMRRILRK
Sbjct: 558 AIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRK 617
Query: 602 IASRQLDELGDTSTLADPGVVDQLI 626
IA+ LGDTSTLADPGVV++L+
Sbjct: 618 IAAGDTSNLGDTSTLADPGVVEKLL 642
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/625 (53%), Positives = 431/625 (68%), Gaps = 10/625 (1%)
Query: 2 YKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDR 61
YK+S+ DP FW + W + Q+V +N GNV I+W++ G N+ NCLDR
Sbjct: 28 YKQSINDPDTFWGEQGKILDWITPY-QKV--KNTSFAPGNVSIKWYEDGTLNLAANCLDR 84
Query: 62 NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM 121
+++ GD+ AI WE +D ++Y +L + VC+ AN L D+G+KKGD V IY+PM+
Sbjct: 85 HLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVP 143
Query: 122 ELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVD 181
E +AMLACARIGAVHSV+F GFS +++A RI+D ++VIT++ R ++I LK VD
Sbjct: 144 EAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVD 203
Query: 182 AALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED 241
AL + + + L T + WQ+GRD+WW+D++ K + + E ++AED
Sbjct: 204 DALKNPNVTSVEHVIVLK------RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAED 257
Query: 242 PLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 301
PLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P D+YWCTAD GW+TGHSY+
Sbjct: 258 PLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLL 317
Query: 302 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 361
YGP+ GA+ ++FEG P +P R +VDK++V I YTAPT +R+LM +G++ + R
Sbjct: 318 YGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDR 377
Query: 362 KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 421
SLR+LGSVGEPINP AW W++ +G +CP+ DTWWQTETGGFMITPLPGA K GSA
Sbjct: 378 SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA 437
Query: 422 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF 481
T PFFGVQP +VD +G EG G L I SWPG RTL+GDHER+E TYF F YF
Sbjct: 438 TRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 497
Query: 482 TGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQ 541
+GDG RD+DGY+W+TGRVDDV+NVSGHR+GTAE+ESALV+HP+ KGQ
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 542 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601
IYA+VTL G S EL + VRK+IG A PD +HW LPKTRSG IMRRILRK
Sbjct: 558 AIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRILRK 617
Query: 602 IASRQLDELGDTSTLADPGVVDQLI 626
IA+ LGDTSTLADPGVV++L+
Sbjct: 618 IAAGDTSNLGDTSTLADPGVVEKLL 642
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/625 (53%), Positives = 431/625 (68%), Gaps = 10/625 (1%)
Query: 2 YKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDR 61
YK+S+ DP FW + W + Q+V +N GNV I+W++ G N+ NCLDR
Sbjct: 28 YKQSINDPDTFWGEQGKILDWITPY-QKV--KNTSFAPGNVSIKWYEDGTLNLAANCLDR 84
Query: 62 NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM 121
+++ GD+ AI WE +D ++Y +L + VC+ AN L D+G+KKGD V IY+PM+
Sbjct: 85 HLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVP 143
Query: 122 ELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVD 181
E +AMLACARIGAVHSV+F GFS +++A RI+D ++VIT++ R ++I LK VD
Sbjct: 144 EAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVD 203
Query: 182 AALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED 241
AL + + + L T + WQ+GRD+WW+D++ K + + E ++AED
Sbjct: 204 DALKNPNVTSVEHVIVLK------RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAED 257
Query: 242 PLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 301
PLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P D+YWCTAD GW+TGHSY+
Sbjct: 258 PLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLL 317
Query: 302 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 361
YGP+ GA+ ++FEG P +P R +VDK++V I YTAPT +R+LM +G++ + R
Sbjct: 318 YGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDR 377
Query: 362 KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 421
SLR+LGSVGEPINP AW W++ +G +CP+ DTWWQTETGGFMITPLPGA K GSA
Sbjct: 378 SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA 437
Query: 422 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF 481
T PFFGVQP +VD +G EG G L I SWPG RTL+GDHER+E TYF F YF
Sbjct: 438 TRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 497
Query: 482 TGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQ 541
+GDG RD+DGY+W+TGRVDDV+NVSGHR+GTAE+ESALV+HP+ KGQ
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 542 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601
IYA+VTL G S EL + V K+IG A PD +HW LPKTRSGKIMRRILRK
Sbjct: 558 AIYAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRK 617
Query: 602 IASRQLDELGDTSTLADPGVVDQLI 626
IA+ LGDTSTLADPGVV++L+
Sbjct: 618 IAAGDTSNLGDTSTLADPGVVEKLL 642
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/625 (53%), Positives = 431/625 (68%), Gaps = 10/625 (1%)
Query: 2 YKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDR 61
YK+S+ DP FW + W + Q+V +N GNV I+W++ G N+ NCLDR
Sbjct: 28 YKQSINDPDTFWGEQGKILDWITPY-QKV--KNTSFAPGNVSIKWYEDGTLNLAANCLDR 84
Query: 62 NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM 121
+++ GD+ AI WE +D ++Y +L + VC+ AN L D+G+KKGD V IY+PM+
Sbjct: 85 HLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVP 143
Query: 122 ELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVD 181
E +AMLACARIGAVHSV+F GFS +++A RI+D ++VIT++ R ++I LK VD
Sbjct: 144 EAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVD 203
Query: 182 AALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED 241
AL + + + L T + WQ+GRD+WW+D++ K + + E ++AED
Sbjct: 204 DALKNPNVTSVEHVIVLK------RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAED 257
Query: 242 PLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 301
PLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P D+YWCTAD GW+TGHSY+
Sbjct: 258 PLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLL 317
Query: 302 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 361
YGP+ GA+ ++FEG P +P R +VDK++V I YTAPT +R+LM +G++ + R
Sbjct: 318 YGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDR 377
Query: 362 KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 421
SLR+LGSVGEPINP AW W++ +G +CP+ DTWWQTETGGFMITPLPGA K GSA
Sbjct: 378 SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA 437
Query: 422 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF 481
T PFFGVQP +VD +G EG G L I SWPG RTL+GDHER+E TYF F YF
Sbjct: 438 TRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 497
Query: 482 TGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQ 541
+GDG RD+DGY+W+TGRVDDV+NVSGHR+GTAE+ESALV+HP+ KGQ
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 542 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601
IYA+VTL G S EL + V K+IG A PD +HW LPKTRSGKIMRRILRK
Sbjct: 558 AIYAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRK 617
Query: 602 IASRQLDELGDTSTLADPGVVDQLI 626
IA+ LGDTSTLADPGVV++L+
Sbjct: 618 IAAGDTSNLGDTSTLADPGVVEKLL 642
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/625 (53%), Positives = 431/625 (68%), Gaps = 10/625 (1%)
Query: 2 YKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDR 61
YK+S+ DP FW + W + Q+V +N GNV I+W++ G N+ NCLDR
Sbjct: 28 YKQSINDPDTFWGEQGKILDWITPY-QKV--KNTSFAPGNVSIKWYEDGTLNLAANCLDR 84
Query: 62 NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM 121
+++ GD+ AI WE +D ++Y +L + VC+ AN L D+G+KKGD V IY+PM+
Sbjct: 85 HLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVP 143
Query: 122 ELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVD 181
E +AMLACARIGAVHSV+F GFS +++A I+D ++VIT++ R ++I LK VD
Sbjct: 144 EAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVD 203
Query: 182 AALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED 241
AL + + + L T + WQ+GRD+WW+D++ K + + E ++AED
Sbjct: 204 DALKNPNVTSVEHVIVLK------RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAED 257
Query: 242 PLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 301
PLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P D+YWCTAD GW+TGHSY+
Sbjct: 258 PLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLL 317
Query: 302 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 361
YGP+ GA+ ++FEG P +P R +VDK++V I YTAPT +R+LM +G++ + R
Sbjct: 318 YGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDR 377
Query: 362 KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 421
SLR+LGSVGEPINP AW W++ +G +CP+ DTWWQTETGGFMITPLPGA K GSA
Sbjct: 378 SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA 437
Query: 422 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF 481
T PFFGVQP +VD +G EG G L I SWPG RTL+GDHER+E TYF F YF
Sbjct: 438 TRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 497
Query: 482 TGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQ 541
+GDG RD+DGY+W+TGRVDDV+NVSGHR+GTAE+ESALV+HP+ KGQ
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 542 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601
IYA+VTL G S EL + VRK+IG A PD +HW LPKTRSGKIMRRILRK
Sbjct: 558 AIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRK 617
Query: 602 IASRQLDELGDTSTLADPGVVDQLI 626
IA+ LGDTSTLADPGVV++L+
Sbjct: 618 IAAGDTSNLGDTSTLADPGVVEKLL 642
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 575 bits (1481), Expect = e-164, Method: Compositional matrix adjust.
Identities = 301/638 (47%), Positives = 398/638 (62%), Gaps = 20/638 (3%)
Query: 1 MYKRSVEDPAGFWADIASEFY-WKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCL 59
++K S+EDPA F+ A++F W + + + + R WF G N CYNC+
Sbjct: 29 LHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCV 88
Query: 60 DRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLP 118
DR+ +K AI +E ++PG ++TY +LL++VCQ+A L +GV+KGD V +Y+P
Sbjct: 89 DRH-ALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMP 147
Query: 119 MLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 178
M+ E I +LA +RIGA+HSVVFAGFSS+SL RI D KVVIT++ RG K I K
Sbjct: 148 MVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKR 207
Query: 179 IVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVD 238
IVD AL E V L Y + + + RD+ W KY T VD
Sbjct: 208 IVDDALRETP----GVRHVLVYRKTN---NPSVAFHAPRDLDWATEKKKYKTYYPCTPVD 260
Query: 239 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 298
+EDPLFLLYTSGSTG PKGV H+T GY++ T +Y FD DV++ D GWITGH+
Sbjct: 261 SEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHT 320
Query: 299 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 358
YV YGP+L G + +VFEG P YP+ R WDI+D++KVT FY APT +R L R G+ Y+
Sbjct: 321 YVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIEN 380
Query: 359 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-WPQK 417
+S KSLR LGSVGEPI W W+ +G + PI DT+WQTE+G ++TPL G P K
Sbjct: 381 HSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMK 440
Query: 418 PGSATFPFFGVQPVIVD-EKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 475
PGSA+FPFFG+ V++D G E+ G L +K++WP RT++ +H+RY TY P
Sbjct: 441 PGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNP 500
Query: 476 FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXX 535
+PGYYFTGDG ++DKDGY W+ GRVDDV+NVSGHR+ TAE+E+A++ P
Sbjct: 501 YPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFN 560
Query: 536 XXXKGQGIYAFVTLVEGVPYS-------EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 588
GQ + AFV L +S ++++K LV VRK IG FAAP I LPK
Sbjct: 561 DDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPK 620
Query: 589 TRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLI 626
TRSGKIMRRILRKI + + D+LGD STL++PG+V LI
Sbjct: 621 TRSGKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLI 658
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 153/541 (28%), Positives = 229/541 (42%), Gaps = 34/541 (6%)
Query: 69 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 128
+K+A+ W +D G + T+ L + AN+ G+ KGD V++ L + ML
Sbjct: 71 EKLAMIW-CDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCML 129
Query: 129 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 188
++GA+ + + RI K+++ A P+ VD A EC
Sbjct: 130 GLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCI-AEDDVPEQ------VDEAHAECG 182
Query: 189 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 248
D+ L E W D R ++ P + ED + ++
Sbjct: 183 ------DIPLKKAKVGGDVLEG--WIDFRK-ELEESSPIFERPTGEVSTKNEDICLVYFS 233
Query: 249 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNG 308
SG+ G PK V H + H T KY + + +++ AD GW YG + G
Sbjct: 234 SGTAGFPKMVEHDNTYPLGHILTA-KYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAG 292
Query: 309 ASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 368
+V V++ ++ + KY VT F PT+ R L++ E ++ Y+ +L+
Sbjct: 293 CAVFVYDYDRF--EAKNMLEKASKYGVTTFCAPPTIYRFLIK---EDLSHYNFSTLKYAV 347
Query: 369 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV 428
GEP+NP + F G + + + QTET I P P KPGS P G
Sbjct: 348 VAGEPLNPEVFNRFLEFTG---IKLMEGFGQTETV-VTIATFPWMEP-KPGSIGKPTPGY 402
Query: 429 QPVIVDEKGVEIEGECSGYLCIKS--SWPGAFRTLYG-DHERYETTYFKPFPGYYFTGDG 485
+ ++D G E G + I + P YG D ER E T+ GYY TGD
Sbjct: 403 KIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHD---GYYHTGDM 459
Query: 486 CSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYA 545
D+DGY W GR DD+I SG+++G EVESAL+ HP +GQ I A
Sbjct: 460 AWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKA 519
Query: 546 FVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 605
+ L + S+ L+ L V+ + P I + P LPKT SGKI R +R
Sbjct: 520 TIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579
Query: 606 Q 606
Q
Sbjct: 580 Q 580
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 135/537 (25%), Positives = 219/537 (40%), Gaps = 53/537 (9%)
Query: 75 WEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACARI 133
W N G + + +L + Q AN L G+++GD V + LP + E + +L C R
Sbjct: 63 WWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRA 122
Query: 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGIS 193
G + S + R+ K K ++ + V + VD EC S
Sbjct: 123 GLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQE---------VDTVASECP----S 169
Query: 194 VDVCLTYENQSAMTRENTKWQDGRDIW--WQDVVPKYPTKCEVEWVDAEDPLFLLYTSGS 251
+ + L +S D W ++ ++ + T +++ + +TSG+
Sbjct: 170 LRIKLLVSEKSC------------DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGT 217
Query: 252 TGKPKGVLHTTGGYMVHTATTFKYAFD-----YKPSDVYWCTADCGWITGHSYVTYGPML 306
+G PK H+ +++ K D + SD+ W +D GWI P
Sbjct: 218 SGLPKMAEHS------YSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWA 271
Query: 307 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 366
GA V P + D + Y + AP + R L++ + ++ Y L+
Sbjct: 272 LGACTFVHL-LPKF-DPLVILKTLSSYPIKSMMGAPIVYRMLLQ---QDLSSYKFPHLQN 326
Query: 367 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG-GFMITPLPGAWPQKPGSATFPF 425
+VGE + P N + I +++ QTETG M++ P G+A
Sbjct: 327 CVTVGESLLPETLE---NWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAA-SC 382
Query: 426 FGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDG 485
+ VQ I+D+KG + G + I+ G + + T ++ GD
Sbjct: 383 YDVQ--IIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDR 440
Query: 486 CSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYA 545
+D+DGY GR DD+IN SG+RIG +EVE+AL+ HP +G+ + A
Sbjct: 441 GIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKA 500
Query: 546 FVTLVEGVPYS--EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 600
FV L E+L K L V+ + P KI + LPKT +GKI R LR
Sbjct: 501 FVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLR 557
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 135/537 (25%), Positives = 219/537 (40%), Gaps = 53/537 (9%)
Query: 75 WEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACARI 133
W N G + + +L + Q AN L G+++GD V + LP + E + +L C R
Sbjct: 63 WWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRA 122
Query: 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGIS 193
G + S + R+ K K ++ + V + VD EC S
Sbjct: 123 GLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQE---------VDTVASECP----S 169
Query: 194 VDVCLTYENQSAMTRENTKWQDGRDIW--WQDVVPKYPTKCEVEWVDAEDPLFLLYTSGS 251
+ + L +S D W ++ ++ + T +++ + +TSG+
Sbjct: 170 LRIKLLVSEKSC------------DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGT 217
Query: 252 TGKPKGVLHTTGGYMVHTATTFKYAFD-----YKPSDVYWCTADCGWITGHSYVTYGPML 306
+G PK H+ +++ K D + SD+ W +D GWI P
Sbjct: 218 SGLPKMAEHS------YSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWA 271
Query: 307 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 366
GA V P + D + Y + AP + R L++ + ++ Y L+
Sbjct: 272 LGACTFVHL-LPKF-DPLVILKTLSSYPIKSMMGAPIVYRMLLQ---QDLSSYKFPHLQN 326
Query: 367 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG-GFMITPLPGAWPQKPGSATFPF 425
+VGE + P N + I +++ QTETG M++ P G+A
Sbjct: 327 CVTVGESLLPETLE---NWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAA-SC 382
Query: 426 FGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDG 485
+ VQ I+D+KG + G + I+ G + + T ++ GD
Sbjct: 383 YDVQ--IIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDR 440
Query: 486 CSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYA 545
+D+DGY GR DD+IN SG+RIG +EVE+AL+ HP +G+ + A
Sbjct: 441 GIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKA 500
Query: 546 FVTLVEGVPYS--EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 600
FV L E+L K L V+ + P KI + LPKT +GKI R LR
Sbjct: 501 FVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLR 557
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 123/532 (23%), Positives = 205/532 (38%), Gaps = 63/532 (11%)
Query: 85 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 144
TL+Y +L ++ ++A L+ G KG V +Y +EL I +L + GA + V
Sbjct: 489 TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKL 548
Query: 145 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 204
D ++ + D ++T +K ++ A+ L Y +
Sbjct: 549 PEDRISYMLADSAAACLLTHQEMK----------------EQAAE--------LPYTGTT 584
Query: 205 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGG 264
+ T++++ Q P +D DP +++YTSG+TGKPKG + T
Sbjct: 585 LFIDDQTRFEE------QASDP-------ATAIDPNDPAYIMYTSGTTGKPKGNITTHAN 631
Query: 265 YMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSG 324
AF D + ++ + ++ Y MLN A +++ + T D+
Sbjct: 632 IQGLVKHVDYMAF--SDQDTFLSVSNYAF-DAFTFDFYASMLNAARLIIAD-EHTLLDTE 687
Query: 325 RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFN 384
R D++ + V + + L L G +++ K LR + GE + R
Sbjct: 688 RLTDLILQENVNVMFATTALFNLLTDAGEDWM-----KGLRCILFGGERASVPHVRKALR 742
Query: 385 VVGDSRC-----PISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVE 439
++G + P T + T ++ LP + P P I++E+
Sbjct: 743 IMGPGKLINCYGPTEGTVFAT---AHVVHDLPDSISSLPIGK--PISNASVYILNEQSQL 797
Query: 440 IEGECSGYLCIKSSWPGAFRTLYGD--HERYETTYFKPFPGYYFTGDGCSRDKDGYHWLT 497
G LCI D E++ FKP Y TGD DG
Sbjct: 798 QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYA 857
Query: 498 GRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSE 557
GR+DD + + GHRI E+E L +P I A+ LV S
Sbjct: 858 GRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAY--LVNRTQLSA 915
Query: 558 ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDE 609
E K+ ++KQ+ A+ P + LP T +GK+ +R+L K QL E
Sbjct: 916 EDVKA---HLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAE 964
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 121/515 (23%), Positives = 203/515 (39%), Gaps = 36/515 (6%)
Query: 87 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 146
TY +L ++ + A+ L+ +GV + +++ + + LP+A L G V V +
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 147 DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM 206
+ + VI S A+ + V AL+ G + V E++ +
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQN---------VTQALESAEHDGCQLIVSQPRESEPRL 160
Query: 207 TRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM 266
+++++ + +D F LY+SGSTGKPKG +HT
Sbjct: 161 AP-----------LFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLY 209
Query: 267 VHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRS 326
K +DV + A + G P+ GA+ ++ PT +
Sbjct: 210 WTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPT---ADAI 266
Query: 327 WDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVV 386
+ + +++ T+FY PTL +++ N + + ++R+ S GE + F
Sbjct: 267 FARLVEHRPTVFYGVPTLYANMLVSPN--LPARADVAIRICTSAGEALPREIGERFTAHF 324
Query: 387 GDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSG 446
G C I D TE ++ GA + G+ P G + + DE G + G
Sbjct: 325 G---CEILDGIGSTEMLHIFLSNRAGAV--EYGTTGRPVPGYEIELRDEAGHAVPDGEVG 379
Query: 447 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINV 506
L IK P A + + E+ T+ + +GD R +G + GR DD++ V
Sbjct: 380 DLYIKG--PSAAVMYWNNREKSRATFLGE---WIRSGDKYCRLPNGCYVYAGRSDDMLKV 434
Query: 507 SGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLA 566
SG + EVE LV H + AFV L SE L + L
Sbjct: 435 SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVK-TRAFVVLKREFAPSEILAEELKAF 493
Query: 567 VRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601
V+ ++ P I + LPKT +GKI R LR+
Sbjct: 494 VKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 128/531 (24%), Positives = 222/531 (41%), Gaps = 66/531 (12%)
Query: 87 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 146
TY+ + ++A+ L IG+++GD ++++LP E +A L + GA+ + +
Sbjct: 51 TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 147 DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDE-----CAKSGISVDVCLTYE 201
LA+ + K++IT +A + + + D A + C S + D CL +
Sbjct: 111 AELAKHAKASRAKLLIT--------QACYYEKVKDFARESDVKVMCVDS--APDGCLHF- 159
Query: 202 NQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT 261
S +T+ + DI DVV L Y+SG+TG PKGV+ T
Sbjct: 160 --SELTQADENEAPQVDISPDDVVA------------------LPYSSGTTGLPKGVMLT 199
Query: 262 TGGYMVHTATTFKYAFDYKPSDVYWCTAD---CGWITGHSYVTYGPMLNGASVVVFEGAP 318
G + T+ D ++Y+ + D C H Y ML G V GAP
Sbjct: 200 HKGLI----TSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRV----GAP 251
Query: 319 TYP----DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 374
+ G +++KYKV+I P ++ S+ + + + ++ SLR++ S G P+
Sbjct: 252 ILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--LDKHDLSSLRMIKSGGAPL 309
Query: 375 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPV 431
+R + + TE G + L A + KPG+ +
Sbjct: 310 GKELEDTVRAKFPQAR--LGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMK 367
Query: 432 IVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDK 490
IVD E G + G +CI+ + D E T K G+ TGD D
Sbjct: 368 IVDPETGASLPRNQPGEICIRGDQ--IMKGYLNDPEATSRTIDK--EGWLHTGDIGYIDD 423
Query: 491 DGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLV 550
D ++ R+ ++I G ++ AE+E+ L++HP+ G+ AFV
Sbjct: 424 DDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKS 483
Query: 551 EGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601
E +E+ K + KQ+ + ++ + +PK SGKI+R+ L++
Sbjct: 484 EKSQATEDEIKQY---ISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKE 531
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 121/525 (23%), Positives = 214/525 (40%), Gaps = 54/525 (10%)
Query: 79 DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 138
+P D +TY+Q+ + A+ L +G+ KGD V + +P +E A++GAV
Sbjct: 37 EPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAV 96
Query: 139 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCL 198
+ ++ ++ + D KVVI P A ++DA + G D
Sbjct: 97 PINTRLAAPEVSFILSDSGSKVVIYG-----APSA----PVIDAIRAQADPPGTVTD--- 144
Query: 199 TYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGV 258
W G D + + + VE +D LF++YTSG+TG PKGV
Sbjct: 145 --------------WI-GADSLAERLRSAAADEPAVE-CGGDDNLFIMYTSGTTGHPKGV 188
Query: 259 LHTTGGYMVHT-ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGA 317
+HT VH+ A+++ D + D + + V + M G +++
Sbjct: 189 VHTHES--VHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM--- 242
Query: 318 PTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPS 377
P + D+ + W ++ + +V I P ++ + MR E+ R + G P+ P
Sbjct: 243 PQF-DATKVWSLIVEERVCIGGAVPAIL-NFMRQVPEF-AELDAPDFRYFITGGAPM-PE 298
Query: 378 AWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG 437
A + + + TE+ G L +K GSA + + G
Sbjct: 299 A---LIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDG 355
Query: 438 VEIEGECSGYLCIKSSWPGAFRTLYGDH-ERYETTYFKPFPGYYFTGDGCSRDKDGYHWL 496
V I G + IKS L ++ R E T G++ TGD D +GY ++
Sbjct: 356 V-IREHGEGEVVIKSD------ILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYI 408
Query: 497 TGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYS 556
R+ D+I G + AE+ES ++ P G+ I A + + + S
Sbjct: 409 KDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGE-IAAAIVVADQNEVS 467
Query: 557 EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601
E+ +V ++ + P K+ +A +P+ +GKI++ +LR+
Sbjct: 468 EQ---QIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLRE 509
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 122/528 (23%), Positives = 213/528 (40%), Gaps = 54/528 (10%)
Query: 87 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 146
TYS + Q+A +GV + D V++ LP E ++ LA + GA + F+
Sbjct: 90 TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149
Query: 147 DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD-IVDAALDECAKSGISVDVCLTYENQSA 205
+A++ K++IT K + D +V +D+ I + CL + +
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIP-EGCLRFTELTQ 208
Query: 206 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 265
T E ++ D +I DVV L Y+SG+TG PKGV+ T G
Sbjct: 209 STTEASEVIDSVEISPDDVVA------------------LPYSSGTTGLPKGVMLTHKGL 250
Query: 266 MVHTATTFKYAFDYKPSDVYWCTAD---CGWITGHSYVTYGPML----NGASVVVFEGAP 318
+ T+ D + ++Y+ + D C H Y ML GA++++ P
Sbjct: 251 V----TSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIM---P 303
Query: 319 TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSA 378
+ + +++ + KVT+ P +V ++ + +Y S+RV+ S P+
Sbjct: 304 KF-EINLLLELIQRCKVTVAPMVPPIVLAIAKSSE--TEKYDLSSIRVVKSGAAPLGKEL 360
Query: 379 WRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVD- 434
+++ + + TE G + L A +P K G+ + IVD
Sbjct: 361 EDAVNAKFPNAK--LGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDP 418
Query: 435 EKGVEIEGECSGYLCIKSS--WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDG 492
+ G + G +CI+ G E + G+ TGD D D
Sbjct: 419 DTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKD------GWLHTGDIGLIDDDD 472
Query: 493 YHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEG 552
++ R+ ++I G ++ AE+E+ L+ HP G+ AFV +
Sbjct: 473 ELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD 532
Query: 553 VPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 600
SE+ K V KQ+ + +K+ + +PK SGKI+R+ LR
Sbjct: 533 SELSEDDVKQF---VSKQVVFYKRINKVFFTESIPKAPSGKILRKDLR 577
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 118/534 (22%), Positives = 210/534 (39%), Gaps = 57/534 (10%)
Query: 70 KVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA 129
K+AI A D ++Y++L+ + ++AN L G++ GD V +E + LA
Sbjct: 18 KLAIETAAGD-----KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLA 72
Query: 130 CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAK 189
R G V+ + ++ L I D +PK+V+ + + G AI AK
Sbjct: 73 TVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAI------------AAK 120
Query: 190 SGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTS 249
G +V+ T DGR ++ A+D +LYTS
Sbjct: 121 VGATVE---------------TLGPDGRGSLTDAAAGASEAFATIDR-GADDLAAILYTS 164
Query: 250 GSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGA 309
G+TG+ KG + ++ T Y + + P DV Y T+G +
Sbjct: 165 GTTGRSKGAXLSHDNLASNSLTLVDY-WRFTPDDVLIHALPI-------YHTHGLFVASN 216
Query: 310 SVVVFEGAPTYPDSGRSWDIVD-KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 368
+ G+ + I+D + T+ PT L++ + +T+ + R+
Sbjct: 217 VTLFARGSXIFLPKFDPDKILDLXARATVLXGVPTFYTRLLQ--SPRLTKETTGHXRLFI 274
Query: 369 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV 428
S P+ R + G + + + + TET P G + PG+ GV
Sbjct: 275 SGSAPLLADTHREWSAKTGHA---VLERYGXTETNXNTSNPYDG--DRVPGAVGPALPGV 329
Query: 429 QPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS 487
+ D E G E+ G + +K P F+ + E+ ++ + G++ TGD
Sbjct: 330 SARVTDPETGKELPRGDIGXIEVKG--PNVFKGYWRXPEKTKSEFRDD--GFFITGDLGK 385
Query: 488 RDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFV 547
D+ GY + GR D++ G + E+ES + + P G+G+ A V
Sbjct: 386 IDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAVV 445
Query: 548 TLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601
+G E ++ + Q+ F P K+ + LP+ GK+ + +LR+
Sbjct: 446 VRDKGATIDE---AQVLHGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQKNVLRE 496
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 124/535 (23%), Positives = 206/535 (38%), Gaps = 65/535 (12%)
Query: 83 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 142
+ L+Y +L + LA L + G+ KGD ++ LP + E I A + G V
Sbjct: 53 ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALY 112
Query: 143 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 202
L I +PK++I S R + +D+ D +S ++ L +
Sbjct: 113 SHRQYELNAFIKQIQPKLLIGS----RQHEVFSNNQFIDSLHD----VNLSPEIILMLNH 164
Query: 203 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW--VDAEDPLFLLYTSGSTGKPKGVLH 260
Q+ D D + + P + V++ A++ F + GSTG PK +
Sbjct: 165 QAT------------DFGLLDWI-ETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPR 211
Query: 261 TTGGYMVHTATTFKYAFDYK-PSDVYWCTAD------CGWITGHSYVTYGP----MLNGA 309
T Y DY + C + C H+++ P +L+
Sbjct: 212 THNDY------------DYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAG 259
Query: 310 SVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 369
VV AP P+ + I+ +++V + P+ V + +Y + +SL++L
Sbjct: 260 GCVVM--APN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQI--QSLKLLQV 314
Query: 370 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQ 429
G S R V+ C + + E G T L + Q + P
Sbjct: 315 GGASFPESLARQVPEVLN---CKLQQVFGMAE-GLVNYTRLDDSDEQIFTTQGRPISSDD 370
Query: 430 PV-IVDEKGVEI-EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS 487
+ IVDE+ E+ EGE G L + P F Y E + + YY++GD
Sbjct: 371 EIKIVDEQYREVPEGEI-GMLATRG--PYTFCGYYQSPEHNSQVFDED--NYYYSGDLVQ 425
Query: 488 RDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFV 547
R DG + GR+ D IN G +I + E+E ++ HP+ G+ AF+
Sbjct: 426 RTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFI 485
Query: 548 TLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 602
+ LR+ L + I + PD+I LP T GK+ ++ LR I
Sbjct: 486 VSRNPELKAVVLRRHL---MELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSI 537
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 137/596 (22%), Positives = 223/596 (37%), Gaps = 122/596 (20%)
Query: 36 DVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQV 95
D+R +E G C + L A D VA+ EA++ LTY L ++
Sbjct: 60 DLRPTGPAVERAPAGA---CVHELFEAQAARAPDAVALLHEADE------LTYGALNERA 110
Query: 96 CQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMD 155
+LA+ L +GV G V ++L ++ +A+LA + G ++++ F + LA + D
Sbjct: 111 NRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLED 170
Query: 156 CKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQD 215
+++TS + ++ L E+++A
Sbjct: 171 TGAPLLVTSRPLS---------------------GRLTGTTTLYVEDEAAS--------- 200
Query: 216 GRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY 275
P V ED +++TSGSTG+PKGV+ H A T Y
Sbjct: 201 -----------DAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSP------HRALTGTY 243
Query: 276 -AFDYK---PSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVD 331
DY P +V+ + W +G +L GA V+ G PD ++V
Sbjct: 244 LGQDYAGFGPDEVFLQCSPVSW-DAFGLELFGALLFGARCVLQSG--QNPDPLEIGELVA 300
Query: 332 KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPIN-PSAWRWFFN----VV 386
++ VT+ + +L L+ + E + + +R + GEP + P + + +
Sbjct: 301 RHGVTMLQLSASLFNFLVDEVPE-----AFEGVRYAITGGEPASVPHVAKARRDHPALRL 355
Query: 387 GDSRCPISDTWWQTE----TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEG 442
G+ P + T G T LP P G + ++D+
Sbjct: 356 GNGYGPAESMGFTTHHAVVAGDLSGTALP---------IGVPLAGKRAYVLDDD------ 400
Query: 443 ECSGYLCIKSSWPGAFRTLY----GDHERY--------ETTYFKPFPG-----YYFTGDG 485
+K + GA LY G Y E PF G Y TGD
Sbjct: 401 -------LKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDL 453
Query: 486 CSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYA 545
R DG GR DD + + G R+ EVE+ LV HP + + A
Sbjct: 454 ARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVA 513
Query: 546 FVTL--VEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 599
+V + P + ELR+ V + + A+ P + LP+T +GK+ RR L
Sbjct: 514 YVVAERADAPPDAAELRRH----VAEALPAYMVPVECVPVDELPRTPNGKLDRRAL 565
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 130/568 (22%), Positives = 224/568 (39%), Gaps = 75/568 (13%)
Query: 55 CYNCLDRNIEAGLGDKVAI-----YWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKK 109
+ L R+ A GD++AI +W +Y +L + +LA + +G+++
Sbjct: 26 TFGDLLRDRAAKYGDRIAITCGNTHW-----------SYRELDTRADRLAAGFQKLGIQQ 74
Query: 110 GDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKR 169
D V++ LP + E + A R+GA+ VFA S ++ C+ A
Sbjct: 75 KDRVVVQLPNIKEFFEVIFALFRLGALP--VFA-LPSHRSSEITYFCE----FAEAAAYI 127
Query: 170 GPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP 229
P A D A +K ++ + E + + E+ + P
Sbjct: 128 IPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTE--------------P 173
Query: 230 TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA-FDYKPSDVYWCT 288
K + V + D FL + GSTG K + T Y+ + + D+ S VY
Sbjct: 174 VK--LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDH--STVYLA- 228
Query: 289 ADCGWITGHSYVTYGP----MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTL 344
H+Y P +L VV +P+ PD ++ ++++ KVTI P L
Sbjct: 229 ---ALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPS-PDD--AFPLIEREKVTITALVPPL 282
Query: 345 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 404
M + R SL+VL G + A R V G C + + E G
Sbjct: 283 AMVWMDAASS--RRDDLSSLQVLQVGGAKFSAEAARRVKAVFG---CTLQQVFGMAE-GL 336
Query: 405 FMITPLPGAWPQK-----PGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFR 459
T L P++ G P+ + + D+ +++ +G+L + P R
Sbjct: 337 VNYTRLDD--PEEIIVNTQGKPMSPY--DESRVWDDHDRDVKPGETGHLLTRG--PYTIR 390
Query: 460 TLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESA 519
Y E ++ + G+Y TGD +DGY + GR D IN G ++ EVE+
Sbjct: 391 GYYKAEEHNAASFTED--GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENH 448
Query: 520 LVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDK 579
L++HP G+ F+ + P + EL+ L + + A+ PD+
Sbjct: 449 LLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFL---RERGLAAYKIPDR 505
Query: 580 IHWAPGLPKTRSGKIMRRILRKIASRQL 607
+ + P+T GK+ ++ LR+ S +L
Sbjct: 506 VEFVESFPQTGVGKVSKKALREAISEKL 533
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 131/568 (23%), Positives = 225/568 (39%), Gaps = 75/568 (13%)
Query: 55 CYNCLDRNIEAGLGDKVAI-----YWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKK 109
+ L R+ A GD++AI +W +Y +L + +LA + +G+++
Sbjct: 26 TFGDLLRDRAAKYGDRIAITCGNTHW-----------SYRELDTRADRLAAGFQKLGIQQ 74
Query: 110 GDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKR 169
D V++ LP + E + A R+GA+ VFA S ++ C+ A
Sbjct: 75 KDRVVVQLPNIKEFFEVIFALFRLGALP--VFA-LPSHRSSEITYFCE----FAEAAAYI 127
Query: 170 GPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP 229
P A D A +K ++ + E + + E+ + P
Sbjct: 128 IPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTE--------------P 173
Query: 230 TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA-FDYKPSDVYWCT 288
K + V + D FL + GSTG K + T Y+ + + D+ S VY
Sbjct: 174 VK--LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDH--STVYLA- 228
Query: 289 ADCGWITGHSYVTYGP----MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTL 344
H+Y P +L VV +P+ PD ++ ++++ KVTI P L
Sbjct: 229 ---ALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPS-PDD--AFPLIEREKVTITALVPPL 282
Query: 345 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 404
+ R SL+VL G + A R V G C + + E G
Sbjct: 283 AXVWXDAASS--RRDDLSSLQVLQVGGAKFSAEAARRVKAVFG---CTLQQVFGXAE-GL 336
Query: 405 FMITPLPGAWPQK-----PGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFR 459
T L P++ G P+ + + D+ +++ +G+L + P R
Sbjct: 337 VNYTRLDD--PEEIIVNTQGKPXSPY--DESRVWDDHDRDVKPGETGHLLTRG--PYTIR 390
Query: 460 TLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESA 519
Y E ++ + G+Y TGD +DGY + GR D IN G ++ EVE+
Sbjct: 391 GYYKAEEHNAASFTED--GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENH 448
Query: 520 LVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDK 579
L++HP G+ F+ + P + EL+ L + + A+ PD+
Sbjct: 449 LLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPKAAELKAFL---RERGLAAYKIPDR 505
Query: 580 IHWAPGLPKTRSGKIMRRILRKIASRQL 607
+ + P+T GK+ ++ LR+ S +L
Sbjct: 506 VEFVESFPQTGVGKVSKKALREAISEKL 533
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 112/528 (21%), Positives = 199/528 (37%), Gaps = 51/528 (9%)
Query: 86 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 145
L+Y +L Q LA L+ G+K G+ ++ L + EL I A ++G +
Sbjct: 51 LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110
Query: 146 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 205
L +P ++I A+ D D T+ + +
Sbjct: 111 RSELNAYASQIEPALLIADRQ-----HALFSGD----------------DFLNTFVTEHS 149
Query: 206 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 265
R D + QD + A++ + + G+TG PK + T Y
Sbjct: 150 SIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDY 209
Query: 266 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP-----MLNGASVVVFEGAPTY 320
+ + + Y C H+Y P L G +VV+
Sbjct: 210 YYSVRRSVEIC-QFTQQTRYLCAIPAA----HNYAMSSPGSLGVFLAGGTVVL----AAD 260
Query: 321 PDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWR 380
P + + +++K++V + P V ++ E +R SL++L G ++ +
Sbjct: 261 PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAA 320
Query: 381 WFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV-IVDEKGVE 439
+G C + + E G T L + + + +P V + D +G
Sbjct: 321 RIPAEIG---CQLQQVFGMAE-GLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNP 376
Query: 440 IEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGR 499
+ G L + P FR Y + + + G+Y +GD S D +GY + GR
Sbjct: 377 LPQGEVGRLMTRG--PYTFRGYYKSPQHNASAF--DANGFYCSGDLISIDPEGYITVQGR 432
Query: 500 VDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEEL 559
D IN G +I E+E+ L+ HP G+ A++ + E + + ++
Sbjct: 433 EKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL-RAVQV 491
Query: 560 RKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRK-IASR 605
R+ L R+Q I F PD++ LP T GK+ ++ LR+ +ASR
Sbjct: 492 RRFL----REQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 94/391 (24%), Positives = 158/391 (40%), Gaps = 33/391 (8%)
Query: 218 DIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF 277
D+ + VP+ + D DP ++YTSG+TG PKG + + T A+
Sbjct: 140 DVRARGAVPE-------DGADDGDPALVVYTSGTTGPPKGAV-IPRRALATTLDALADAW 191
Query: 278 DYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTI 337
+ DV + G GP+ G SV + G + ++ D T+
Sbjct: 192 QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG---RFSTEGAARELNDG--ATM 246
Query: 338 FYTAPTL---VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 394
+ PT+ + + E + L V GS P++ + + +
Sbjct: 247 LFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHE-----RIAAATGRRVI 301
Query: 395 DTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI---EGECSGYLCIK 451
+ + TET M T + + G+ P GV+ +V+E G I +GE G + ++
Sbjct: 302 ERYGMTET--LMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVR 359
Query: 452 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGR-VDDVINVSGHR 510
P F T Y + F G++ TGD RD DGY + GR D+I G++
Sbjct: 360 G--PNLF-TEYLNRPDATAAAFTED-GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYK 415
Query: 511 IGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ 570
IG E+E+AL+ HP+ G+ I A++ V P + +L V +
Sbjct: 416 IGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWI--VPADPAAPPALGTLADHVAAR 473
Query: 571 IGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601
+ P + + +P+ GKIM+R L +
Sbjct: 474 LAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 110/518 (21%), Positives = 193/518 (37%), Gaps = 49/518 (9%)
Query: 86 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 145
++Y++L+ + ++AN L G++ GD V +E + LA R G V+ + ++
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 146 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 205
L I D +P +V+ + + D
Sbjct: 89 LHELDYFITDAEPXIVVCDPSXR--------------------------DGIAAIAAXVG 122
Query: 206 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 265
T E T DGR ++ A+D +LYTSG+TG+ G + +
Sbjct: 123 ATVE-TLGPDGRGSLTDAAAGASEAFATIDR-GADDLAAILYTSGTTGRSXGAMLSHDNL 180
Query: 266 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGR 325
++ T Y + + P DV Y T+G + + G+ +
Sbjct: 181 ASNSLTLVDY-WRFTPDDVLIHALPI-------YHTHGLFVASNVTLFARGSMIFLPXFD 232
Query: 326 SWDIVDKY-KVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFN 384
I+D + T+ PT L++ + +T + +R+ S P+ R +
Sbjct: 233 PDXILDLMARATVLMGVPTFYTRLLQ--SPRLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 385 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGE 443
G + + + + TET M T P + PG+ GV + D E G E+
Sbjct: 291 XTGHA---VLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRG 345
Query: 444 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDV 503
G I+ P F + E + + G++ TGD D+ GY + GR D+
Sbjct: 346 DIG--MIEVXGPNVFXGYWRMPEXTXSEFRDD--GFFITGDLGXIDERGYVHILGRGXDL 401
Query: 504 INVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSL 563
+ G + E+ES + + P G+G+ AFV L SE L + L
Sbjct: 402 VITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEILAEEL 461
Query: 564 VLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601
V ++ F P + + LP+ G + +LR+
Sbjct: 462 XAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 499
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 117/526 (22%), Positives = 209/526 (39%), Gaps = 73/526 (13%)
Query: 83 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 142
+ LTY +L + QLA + G+ K V I + ++L I +LA + G + +
Sbjct: 62 NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDI 121
Query: 143 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 202
+ + + + D + ++++T HL ++ + +
Sbjct: 122 EYPKERIQYILDDSQARMLLTQK---------HLVHLIHN---------------IQFNG 157
Query: 203 QSAMTRENT-KWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT 261
Q + E+T K ++G ++ VP T D +++YTSG+TG PKG +
Sbjct: 158 QVEIFEEDTIKIREGTNLH----VPSKST----------DLAYVIYTSGTTGNPKGTMLE 203
Query: 262 TGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYP 321
G + + F+ + + D A + + + +L GAS+ + T
Sbjct: 204 HKG-ISNLKVFFENSLNVTEKDRIGQFASISF-DASVWEMFMALLTGASLYII-LKDTIN 260
Query: 322 DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWR- 380
D + +++ ++T+ PT V L D + S ++L GS P + W+
Sbjct: 261 DFVKFEQYINQKEITVITLPPTYVVHL--DPERIL---SIQTLITAGSATSPSLVNKWKE 315
Query: 381 --WFFNVVGDSRCPISDTWW--QTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEK 436
+ N G + I T W ET G + P+ GA P Q IVDE
Sbjct: 316 KVTYINAYGPTETTICATTWVATKETIGHSV-PI-GA----------PIQNTQIYIVDEN 363
Query: 437 -GVEIEGECSGYLCI--KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGY 493
++ GE +G LCI + G ++ +++ F P Y TGD DG
Sbjct: 364 LQLKSVGE-AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGN 422
Query: 494 HWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGV 553
GR+D+ + + GHR+ EVES L+ H + + A+ + +
Sbjct: 423 IEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI 482
Query: 554 PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 599
P E+LR+ +++ + P +P T +GKI R+ L
Sbjct: 483 PL-EQLRQ----FSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 523
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 108/518 (20%), Positives = 192/518 (37%), Gaps = 52/518 (10%)
Query: 86 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 145
++Y++L+ + ++AN L G++ GD V +E + LA R G V+ + ++
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 146 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 205
L I D +P +V+ + + D
Sbjct: 89 LHELDYFITDAEPXIVVCDPSXR--------------------------DGIAAIAAXVG 122
Query: 206 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 265
T E T DGR ++ A+D +LYTSG+TG+ G + +
Sbjct: 123 ATVE-TLGPDGRGSLTDAAAGASEAFATIDR-GADDLAAILYTSGTTGRSXGAMLSHDNL 180
Query: 266 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGR 325
++ T Y + + P DV Y T+G + + G+ +
Sbjct: 181 ASNSLTLVDY-WRFTPDDVLIHALPI-------YHTHGLFVASNVTLFARGSMIFLPXFD 232
Query: 326 SWDIVDKY-KVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFN 384
I+D + T+ PT L++ + +T + +R+ S P+ R +
Sbjct: 233 PDXILDLMARATVLMGVPTFYTRLLQ--SPRLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 385 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGE 443
G + + + + TET M T P + PG+ GV + D E G E+
Sbjct: 291 XTGHA---VLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRG 345
Query: 444 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDV 503
G I+ P F + E + + G++ TGD D+ GY + GR D+
Sbjct: 346 DIG--MIEVXGPNVFXGYWRMPEXTXSEFRDD--GFFITGDLGXIDERGYVHILGRGXDL 401
Query: 504 INVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSL 563
+ G + E+ES + + P G+G+ AFV L SE +
Sbjct: 402 VITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSE---AQV 458
Query: 564 VLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601
+ + Q+ F P + + LP+ G + +LR+
Sbjct: 459 LHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 496
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 155/380 (40%), Gaps = 51/380 (13%)
Query: 245 LLYTSGSTGKPKGVLHTTGGYMVHT-ATTFKYAFDYKPSDVY-----------WCTADCG 292
+ YT+G+TG PKGV+++ ++H+ A + DV WC
Sbjct: 181 MAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAA 240
Query: 293 WITGHSYVTYGPMLNGASVV-VFEGAPTYPDSG--RSWDIVDKYKVTIFYTAPTLVRSLM 349
+ G V GP L+ AS+V +F+G +G W + Y + + TL R L+
Sbjct: 241 TLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTL-RRLV 299
Query: 350 RDGN----EYVTRYSRKSLRVLGSVG-EPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 404
G+ + R+ R + V G +P + F +S + +TG
Sbjct: 300 VGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG- 358
Query: 405 FMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG--VEIEGECSGYLCIKSSW-PGAFRTL 461
P V+ + DE+G V +G+ G + +K W G +
Sbjct: 359 ------------------LPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGY--- 397
Query: 462 YGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV 521
YG+ E + P G++ TGD D++GY + R+ D+I G I + ++E+AL+
Sbjct: 398 YGNEEATRSA-LTP-DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM 455
Query: 522 SHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIH 581
HP+ + A V P EEL + L+ A + PD
Sbjct: 456 GHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKA---GFAKWQLPDAYV 512
Query: 582 WAPGLPKTRSGKIMRRILRK 601
+A +P+T +GK ++R LR+
Sbjct: 513 FAEEIPRTSAGKFLKRALRE 532
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 106/518 (20%), Positives = 190/518 (36%), Gaps = 52/518 (10%)
Query: 86 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 145
++Y++L+ + ++AN L G++ GD V +E + LA R G V+ + ++
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 146 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 205
L I D +P +V+ + + D
Sbjct: 89 LHELDYFITDAEPXIVVCDPSXR--------------------------DGIAAIAAXVG 122
Query: 206 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 265
T E T DGR ++ A+D +LYTSG+TG+ G + +
Sbjct: 123 ATVE-TLGPDGRGSLTDAAAGASEAFATIDR-GADDLAAILYTSGTTGRSXGAMLSHDNL 180
Query: 266 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGR 325
++ T Y + + P DV Y T+G + + G+ +
Sbjct: 181 ASNSLTLVDY-WRFTPDDVLIHALPI-------YHTHGLFVASNVTLFARGSMIFLPXFD 232
Query: 326 SWDIVDKY-KVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFN 384
I+D + T+ PT L++ + +T + +R+ S P+ R +
Sbjct: 233 PDXILDLMARATVLMGVPTFYTRLLQ--SPRLTXETTGHMRLFISGSAPLLADTHREWSA 290
Query: 385 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGE 443
G + + + + TET M T P + PG+ GV + D E G E+
Sbjct: 291 XTGHA---VLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRG 345
Query: 444 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDV 503
G I+ P F + E + + G++ TGD D+ GY + GR D+
Sbjct: 346 DIG--MIEVXGPNVFXGYWRMPEXTXSEFRDD--GFFITGDLGXIDERGYVHILGRGXDL 401
Query: 504 INVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSL 563
+ G + E+ES + + P G+G+ A V G E +
Sbjct: 402 VITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDXGATIDE---AQV 458
Query: 564 VLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601
+ + Q+ F P + + LP+ G + +LR+
Sbjct: 459 LHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 496
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 128/562 (22%), Positives = 218/562 (38%), Gaps = 77/562 (13%)
Query: 72 AIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 131
AI + GVD +Y++ L++ C L L++ G+ + + E I ++A
Sbjct: 41 AIAFTNAVTGVD--YSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGL 98
Query: 132 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN-------AVKRGPKAIHLKDIVDAAL 184
IG + ++ L + KP +V +S V++ I I+D+ +
Sbjct: 99 FIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKV 158
Query: 185 D----ECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAE 240
D +C + I + Y+ S T VE E
Sbjct: 159 DYRGYQCLDTFIKRNTPPGYQASSFKT--------------------------VEVDRKE 192
Query: 241 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD-YKPSDVYWCTADCGWITGHS- 298
++ +SGSTG PKGV T + T F +A D + V TA + H
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHE----NIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 299 ---YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 355
+ T G ++ G VV+ T D + YK T PTL L + +E
Sbjct: 249 FGMFTTLGYLICGFRVVML----TKFDEETFLKTLQDYKCTNVILVPTLFAILNK--SEL 302
Query: 356 VTRYSRKSLRVLGSVGEPINPS---AWRWFFNVVGDSRCPISDTWWQTET-GGFMITPLP 411
+ +Y +L + S G P++ A FN+ G + + TET +ITP
Sbjct: 303 LNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG-----VRQGYGLTETTSAIIITP-- 355
Query: 412 GAWPQKPGSA--TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYE 469
KPG++ P F + + +D K + G +C+K P + + E
Sbjct: 356 -EGDDKPGASGKVVPLFKAKVIDLDTKK-SLGPNRRGEVCVKG--PMLMKGYVNNPE--A 409
Query: 470 TTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXX 529
T G+ TGD D++ + ++ R+ +I G+++ AE+ES L+ HP
Sbjct: 410 TKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDA 469
Query: 530 XXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI-GAFAAPDKIHWAPGLPK 588
G+ A V L G +E K ++ V Q+ A + + +PK
Sbjct: 470 GVAGVPDPVAGELPGAVVVLESGKNMTE---KEVMDYVASQVSNAKRLRGGVRFVDEVPK 526
Query: 589 TRSGKIMRRILRKIASRQLDEL 610
+GKI R +R+I + + ++
Sbjct: 527 GLTGKIDGRAIREILKKPVAKM 548
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 115/523 (21%), Positives = 195/523 (37%), Gaps = 66/523 (12%)
Query: 86 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 145
LT+ L + +LA+ L GV GD V I E+ + A A IGA+ V +
Sbjct: 32 LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLN 91
Query: 146 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 205
+D +A + D P VV+ +DIV L
Sbjct: 92 ADEIAFVLGDGAPSVVVAGT---------DYRDIVAGVLPSLGG---------------- 126
Query: 206 MTRENTKWQDGRDIW--WQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG 263
++ DG + ++D+ P A D +++T+ G+P+G L + G
Sbjct: 127 -VKKAYAIGDGSGPFAPFKDLASDTPFSAP--EFGAADGFVIIHTAAVGGRPRGALISQG 183
Query: 264 GYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDS 323
++ ++ A+ +DV +TG + GASV+ + D
Sbjct: 184 NLLIAQSSLVD-AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKF-----DP 237
Query: 324 GRSWDIVDKYKVTIFYT-APTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF 382
++ ++ +KVT+ AP L GN + + + L L +V P F
Sbjct: 238 AQAARDIEAHKVTVMAEFAPML-------GN-ILDQAAPAQLASLRAVTGLDTPETIERF 289
Query: 383 FNVVGDSRCPISDTWW---QTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVE 439
++ CP + W Q+ET G + T P + +P SA P F +VD +
Sbjct: 290 -----EATCPNATFWATFGQSETSG-LSTFAP--YRDRPKSAGRPLFWRTVAVVDAEDRP 341
Query: 440 IEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGR 499
+ G + ++ P F+ + + + + G++ TGD D DGY + GR
Sbjct: 342 LPPGEVGEIVLRG--PTVFKGYWNNAAATQHAFRN---GWHHTGDMGRFDADGYLFYAGR 396
Query: 500 V--DDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSE 557
++I G + AEVE AL HP + I A G +
Sbjct: 397 APEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAA 456
Query: 558 ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 600
+ V ++ I + P + + LPK G I R ++
Sbjct: 457 DALAEFVASL---IARYKKPKHVVFVEALPKDAKGAIDRAAVK 496
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 127/562 (22%), Positives = 218/562 (38%), Gaps = 77/562 (13%)
Query: 72 AIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 131
AI + GVD +Y++ L++ C L L++ G+ + + E I ++A
Sbjct: 41 AIAFTNAVTGVD--YSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGL 98
Query: 132 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN-------AVKRGPKAIHLKDIVDAAL 184
IG + ++ L + KP +V +S V++ I I+D+ +
Sbjct: 99 FIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKV 158
Query: 185 D----ECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAE 240
D +C + I + ++ S T VE E
Sbjct: 159 DYRGYQCLDTFIKRNTPPGFQASSFKT--------------------------VEVDRKE 192
Query: 241 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD-YKPSDVYWCTADCGWITGHS- 298
++ +SGSTG PKGV T + T F +A D + V TA + H
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHE----NIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 299 ---YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 355
+ T G ++ G VV+ T D + YK T PTL L + +E
Sbjct: 249 FGMFTTLGYLICGFRVVML----TKFDEETFLKTLQDYKCTSVILVPTLFAILNK--SEL 302
Query: 356 VTRYSRKSLRVLGSVGEPINPS---AWRWFFNVVGDSRCPISDTWWQTET-GGFMITPLP 411
+ +Y +L + S G P++ A FN+ G + + TET +ITP
Sbjct: 303 LNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG-----VRQGYGLTETTSAIIITP-- 355
Query: 412 GAWPQKPGSA--TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYE 469
KPG++ P F + + +D K + G +C+K P + + E
Sbjct: 356 -EGDDKPGASGKVVPLFKAKVIDLDTKK-SLGPNRRGEVCVKG--PMLMKGYVNNPE--A 409
Query: 470 TTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXX 529
T G+ TGD D++ + ++ R+ +I G+++ AE+ES L+ HP
Sbjct: 410 TKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDA 469
Query: 530 XXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI-GAFAAPDKIHWAPGLPK 588
G+ A V L G +E K ++ V Q+ A + + +PK
Sbjct: 470 GVAGVPDPVAGELPGAVVVLESGKNMTE---KEVMDYVASQVSNAKRLRGGVRFVDEVPK 526
Query: 589 TRSGKIMRRILRKIASRQLDEL 610
+GKI R +R+I + + ++
Sbjct: 527 GLTGKIDGRAIREILKKPVAKM 548
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 97/420 (23%), Positives = 166/420 (39%), Gaps = 50/420 (11%)
Query: 79 DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 138
+P D +TY+Q+ + A+ L +G+ KGD V + +P +E A++GAV
Sbjct: 23 EPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAV 82
Query: 139 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCL 198
+ ++ ++ + D KVVI P A ++DA + G D
Sbjct: 83 PINTRLAAPEVSFILSDSGSKVVIYG-----APSA----PVIDAIRAQADPPGTVTD--- 130
Query: 199 TYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGV 258
W G D + + + VE +D LF++YTSG+TG PKGV
Sbjct: 131 --------------WI-GADSLAERLRSAAADEPAVE-CGGDDNLFIMYTSGTTGHPKGV 174
Query: 259 LHTTGGYMVHT-ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGA 317
+HT VH+ A+++ D + D + + V + M G +++
Sbjct: 175 VHTHES--VHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM--- 228
Query: 318 PTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPS 377
P + D+ + W ++ + +V I P ++ + MR E+ R + G P+ P
Sbjct: 229 PQF-DATKVWSLIVEERVCIGGAVPAIL-NFMRQVPEF-AELDAPDFRYFITGGAPM-PE 284
Query: 378 AWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG 437
A + + + TE+ G L +K GSA + + G
Sbjct: 285 A---LIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDG 341
Query: 438 VEIEGECSGYLCIKSSWPGAFRTLYGDH-ERYETTYFKPFPGYYFTGDGCSRDKDGYHWL 496
V I G + IKS L ++ R E T G++ TGD D +GY ++
Sbjct: 342 V-IREHGEGEVVIKSD------ILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYI 394
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 159/389 (40%), Gaps = 38/389 (9%)
Query: 234 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD-YKPSDVYWCTADCG 292
VE E ++ +SGSTG PKGV T + T F +A D + V TA
Sbjct: 186 VEVDRKEQVALIMNSSGSTGLPKGVQLTHE----NIVTRFSHARDPIYGNQVSPGTAVLT 241
Query: 293 WITGHS----YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 348
+ H + T G ++ G VV+ T D + YK T PTL L
Sbjct: 242 VVPFHHGFGMFTTLGYLICGFRVVML----TKFDEETFLKTLQDYKCTSVILVPTLFAIL 297
Query: 349 MRDGNEYVTRYSRKSLRVLGSVGEPINPS---AWRWFFNVVGDSRCPISDTWWQTET-GG 404
+ +E + +Y +L + S G P++ A FN+ G + + TET
Sbjct: 298 NK--SELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG-----VRQGYGLTETTSA 350
Query: 405 FMITPLPGAWPQKPGSA--TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLY 462
+ITP KPG++ P F + + +D K + G +C+K P +
Sbjct: 351 IIITP---EGDDKPGASGKVVPLFKAKVIDLDTKK-SLGPNRRGEVCVKG--PMLMKGYV 404
Query: 463 GDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVS 522
+ E T G+ TGD D++ + ++ R+ +I G+++ AE+ES L+
Sbjct: 405 NNPE--ATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQ 462
Query: 523 HPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI-GAFAAPDKIH 581
HP G+ A V L G +E K ++ V Q+ A +
Sbjct: 463 HPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTE---KEVMDYVASQVSNAKRLRGGVR 519
Query: 582 WAPGLPKTRSGKIMRRILRKIASRQLDEL 610
+ +PK +GKI R +R+I + + ++
Sbjct: 520 FVDEVPKGLTGKIDGRAIREILKKPVAKM 548
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 114/557 (20%), Positives = 212/557 (38%), Gaps = 72/557 (12%)
Query: 67 LGDKVAIYWEANDPGVDATLTYSQLLQQVCQ----LANYLKDIGVKKGDAVIIYLPMLME 122
G+K AI + +P + S ++C+ LA+ + GV+KG+ V + +P ++
Sbjct: 32 FGEKTAII--SAEPKFPSEFPESXNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID 89
Query: 123 LPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDA 182
+ A R+ A + + S L + D + ++ + + K +
Sbjct: 90 YVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYENFKPV-------- 141
Query: 183 ALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDP 242
K+G+ + E S ++ +D ++ V P+ ED
Sbjct: 142 ----LEKTGVERVFVVGGEVNSLSEVXDSGSEDFENV---KVNPE------------EDV 182
Query: 243 LFLLYTSGSTGKPKGVLHT-----TGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT-- 295
+ YT G+TG PKGV T + AT + + +A+ G +
Sbjct: 183 ALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFHSAEFGLVNLX 242
Query: 296 ---GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 352
G+ YV G N + + ++KYK T + P + L+
Sbjct: 243 VTVGNEYVVXG-XFNQEXLA---------------ENIEKYKGTFSWAVPPALNVLVNTL 286
Query: 353 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDS----RCPISDTWWQTETGGFMIT 408
Y L+V + P+ P+ + + R + W TE +T
Sbjct: 287 ESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACP-XVT 345
Query: 409 PLPGAWPQKPGSATFPFFGVQ-PVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHER 467
P K + P ++ VI E G E+ SG + I+ P F+ + +
Sbjct: 346 TNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRG--PNIFKGYWKREKE 403
Query: 468 YETTYFKPFPG--YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQ 525
+ ++ G ++ TGD D++G+ RV +VI G+ I E+E+ L H
Sbjct: 404 NQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEA 463
Query: 526 CXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLA-VRKQIGAFAAPDKIHWAP 584
G+ AF+ L Y ++ + ++ VR++I + ++ +
Sbjct: 464 VXDVAVIGKPDEEAGEVPKAFIVL--KPEYRGKVDEEDIIEWVRERISGYKRVREVEFVE 521
Query: 585 GLPKTRSGKIMRRILRK 601
LP+T SGK++RR+LR+
Sbjct: 522 ELPRTASGKLLRRLLRE 538
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/396 (22%), Positives = 157/396 (39%), Gaps = 49/396 (12%)
Query: 237 VDAEDPLFLLYTSGSTGKPKGV------LHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 290
V +D ++++TSG+TG+PKGV L + +M+ A AFD A
Sbjct: 142 VKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA-----AFDVPKQP--QMLAQ 194
Query: 291 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 350
+ S + + P L + D + + + + V I+ + P+ M
Sbjct: 195 PPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAML 254
Query: 351 DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFF---------NVVGDSRCPISDTWWQTE 401
+ + +L GE + S R F N G + ++ E
Sbjct: 255 SDD--FCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVA--LSAIE 310
Query: 402 TGGFMI---TPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAF 458
M+ T LP +P KP S T+ I+DE G E+ G + + + P
Sbjct: 311 ITREMVDNYTRLPIGYP-KPDSPTY--------IIDEDGKELSSGEQGEIIV--TGPAVS 359
Query: 459 RTLYGDHERYETTYF--KPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEV 516
+ + E+ +F K P Y+ TGD S +D GR+D I +G+RI +V
Sbjct: 360 KGYLNNPEKTAEAFFTFKGQPAYH-TGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDV 418
Query: 517 ESALVSHPQCXXXXXX-XXXXXXKGQGIYAFVTLVEGVP----YSEELRKSLVLAVRKQI 571
L P K Q + A++ + +GV EL K++ +V+ +
Sbjct: 419 SQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHM 478
Query: 572 GAFAAPDKIHWAPGLPKTRSGKI-MRRILRKIASRQ 606
++ P K + LP T +GKI ++ ++ ++ +R+
Sbjct: 479 MSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNRE 514
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 125/550 (22%), Positives = 213/550 (38%), Gaps = 81/550 (14%)
Query: 79 DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 138
D ++ +TY++ + +LA +K G+ +++ ++ + +L IG +
Sbjct: 49 DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVA 108
Query: 139 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD-ECAKSGISVDVC 197
++ L + +P VV S K+G L+ I++ + I +D
Sbjct: 109 PANDCYNERELLNSMNISQPTVVFVS---KKG-----LQKILNVQKKLPIIQKIIIMDSK 160
Query: 198 LTYEN-QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL-FLLYTSGSTGKP 255
Y+ QS T + G + + D VP E D + + ++ +SGSTG P
Sbjct: 161 TDYQGFQSMYTFVTSHLPPGFNEY--DFVP--------ESFDRDKTIALIMNSSGSTGLP 210
Query: 256 KGVLHTTGGYMVHTATTFKYAFDYKP---SDVYWCTADCGWITGHS----YVTYGPMLNG 308
KGV + H A +++ P + + TA + H + T G +++G
Sbjct: 211 KGVA------LPHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLISG 264
Query: 309 ASVVV---FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 365
VV+ FE RS + YK+ PTL L + + + +Y +L
Sbjct: 265 FRVVLMYRFEEELFL----RS---LQDYKIQSALLVPTLFSFLAK--STLIDKYDLSNLH 315
Query: 366 VLGSVGEPINPS---AWRWFFNVVGDSRCPISDTWWQTET-GGFMITPLPGAWPQKPGSA 421
+ S G P++ A F++ G I + TET +ITP KPG+
Sbjct: 316 EIASGGAPLSKEVGEAVAKRFHLPG-----IRQGYGLTETTSAILITP---KGDDKPGAV 367
Query: 422 --TFPFFGVQPVIVDEK---GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPF 476
PFF + V +D GV GE S P + E K
Sbjct: 368 GKVVPFFEAKVVDLDTGKTLGVNQRGELS------VRGPMIMSGYVNNPEATNALIDKD- 420
Query: 477 PGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXX 536
G+ +GD D+D + ++ R+ +I G ++ AE+ES L+ HP
Sbjct: 421 -GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPD 479
Query: 537 XXKGQGIYAFVTLVEGVPYSE----ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG 592
G+ A V L G +E + S V +K G D++ PK +G
Sbjct: 480 DDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEV------PKGLTG 533
Query: 593 KIMRRILRKI 602
K+ R +R+I
Sbjct: 534 KLDARKIREI 543
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 122/547 (22%), Positives = 213/547 (38%), Gaps = 75/547 (13%)
Query: 79 DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 138
D ++ +TY++ + +LA +K G+ +++ ++ + +L IG +
Sbjct: 44 DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 103
Query: 139 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD-ECAKSGISVDVC 197
++ L + +P VV S K+G L+ I++ + I +D
Sbjct: 104 PANDIYNERELLNSMNISQPTVVFVS---KKG-----LQKILNVQKKLPIIQKIIIMDSK 155
Query: 198 LTYEN-QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL-FLLYTSGSTGKP 255
Y+ QS T + G + + D VP E D + + ++ +SGSTG P
Sbjct: 156 TDYQGFQSMYTFVTSHLPPGFNEY--DFVP--------ESFDRDKTIALIMNSSGSTGLP 205
Query: 256 KGVLHTTGGYMVHTATTFKYAFDYKP---SDVYWCTADCGWITGHS----YVTYGPMLNG 308
KGV + H +++ P + + TA + H + T G ++ G
Sbjct: 206 KGVA------LPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICG 259
Query: 309 ASVVV---FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 365
VV+ FE RS + YK+ PTL + + + +Y +L
Sbjct: 260 FRVVLMYRFEEELFL----RS---LQDYKIQSALLVPTLFSFFAK--STLIDKYDLSNLH 310
Query: 366 VLGSVGEPINPS---AWRWFFNVVGDSRCPISDTWWQTET-GGFMITPLPGAWPQKPGSA 421
+ S G P++ A F++ G I + TET +ITP KPG+
Sbjct: 311 EIASGGAPLSKEVGEAVAKRFHLPG-----IRQGYGLTETTSAILITP---EGDDKPGAV 362
Query: 422 --TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGY 479
PFF + V +D G + G LC++ P + E K G+
Sbjct: 363 GKVVPFFEAKVVDLD-TGKTLGVNQRGELCVRG--PMIMSGYVNNPEATNALIDKD--GW 417
Query: 480 YFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXK 539
+GD D+D + ++ R+ +I G+++ AE+ES L+ HP
Sbjct: 418 LHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDA 477
Query: 540 GQGIYAFVTLVEGVPYSE----ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 595
G+ A V L G +E + S V +K G D++ PK +GK+
Sbjct: 478 GELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEV------PKGLTGKLD 531
Query: 596 RRILRKI 602
R +R+I
Sbjct: 532 ARKIREI 538
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 122/547 (22%), Positives = 213/547 (38%), Gaps = 75/547 (13%)
Query: 79 DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 138
D ++ +TY++ + +LA +K G+ +++ ++ + +L IG +
Sbjct: 49 DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 108
Query: 139 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD-ECAKSGISVDVC 197
++ L + +P VV S K+G L+ I++ + I +D
Sbjct: 109 PANDIYNERELLNSMNISQPTVVFVS---KKG-----LQKILNVQKKLPIIQKIIIMDSK 160
Query: 198 LTYEN-QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL-FLLYTSGSTGKP 255
Y+ QS T + G + + D VP E D + + ++ +SGSTG P
Sbjct: 161 TDYQGFQSMYTFVTSHLPPGFNEY--DFVP--------ESFDRDKTIALIMNSSGSTGLP 210
Query: 256 KGVLHTTGGYMVHTATTFKYAFDYKP---SDVYWCTADCGWITGHS----YVTYGPMLNG 308
KGV + H +++ P + + TA + H + T G ++ G
Sbjct: 211 KGVA------LPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICG 264
Query: 309 ASVVV---FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 365
VV+ FE RS + YK+ PTL + + + +Y +L
Sbjct: 265 FRVVLMYRFEEELFL----RS---LQDYKIQSALLVPTLFSFFAK--STLIDKYDLSNLH 315
Query: 366 VLGSVGEPINPS---AWRWFFNVVGDSRCPISDTWWQTET-GGFMITPLPGAWPQKPGSA 421
+ S G P++ A F++ G I + TET +ITP KPG+
Sbjct: 316 EIASGGAPLSKEVGEAVAKRFHLPG-----IRQGYGLTETTSAILITP---EGDDKPGAV 367
Query: 422 --TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGY 479
PFF + V +D G + G LC++ P + E K G+
Sbjct: 368 GKVVPFFEAKVVDLD-TGKTLGVNQRGELCVRG--PMIMSGYVNNPEATNALIDKD--GW 422
Query: 480 YFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXK 539
+GD D+D + ++ R+ +I G+++ AE+ES L+ HP
Sbjct: 423 LHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDA 482
Query: 540 GQGIYAFVTLVEGVPYSE----ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 595
G+ A V L G +E + S V +K G D++ PK +GK+
Sbjct: 483 GELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEV------PKGLTGKLD 536
Query: 596 RRILRKI 602
R +R+I
Sbjct: 537 ARKIREI 543
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 92/373 (24%), Positives = 147/373 (39%), Gaps = 41/373 (10%)
Query: 244 FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP---SDVYWCTADCGWITGHS-- 298
++ +SGSTG PKGV + H +++ P + + TA I H
Sbjct: 228 LIMNSSGSTGLPKGV------ELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGF 281
Query: 299 --YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 356
+ T G + G +V+ + + + D YK+ PTL + + V
Sbjct: 282 GMFTTLGYLTCGFRIVLMY---RFEEELFLRSLQD-YKIQSALLVPTLFSFFAK--STLV 335
Query: 357 TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP-ISDTWWQTETGGFMITPLPGAWP 415
+Y +L + S G P+ V + P I + TET +I P
Sbjct: 336 DKYDLSNLHEIASGGAPLAKEVGEA---VAKRFKLPGIRQGYGLTETTSAIII-TPRGRD 391
Query: 416 QKPGS--ATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 473
KPG+ PFF + V +D G + G LC+K P + + E T+
Sbjct: 392 DKPGACGKVVPFFSAKIVDLD-TGKTLGVNQRGELCVKG--PMIMKGYVNNPE--ATSAL 446
Query: 474 KPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXX 533
G+ +GD DKDGY ++ R+ +I G+++ AE+ES L+ HP
Sbjct: 447 IDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAG 506
Query: 534 XXXXXKGQGIYAFVTLVEGVPYSEE----LRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 589
G+ A V L EG +E+ V A ++ G D++ PK
Sbjct: 507 IPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQVTASKRLRGGVKFVDEV------PKG 560
Query: 590 RSGKIMRRILRKI 602
+GKI R +R+I
Sbjct: 561 LTGKIDARKIREI 573
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 122/547 (22%), Positives = 213/547 (38%), Gaps = 75/547 (13%)
Query: 79 DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 138
D ++ +TY++ + +LA +K G+ +++ ++ + +L IG +
Sbjct: 44 DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 103
Query: 139 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD-ECAKSGISVDVC 197
++ L + +P VV S K+G L+ I++ + I +D
Sbjct: 104 PANDIYNERELLNSMNISQPTVVFVS---KKG-----LQKILNVQKKLPIIQKIIIMDSK 155
Query: 198 LTYEN-QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL-FLLYTSGSTGKP 255
Y+ QS T + G + + D VP E D + + ++ +SGSTG P
Sbjct: 156 TDYQGFQSMYTFVTSHLPPGFNEY--DFVP--------ESFDRDKTIALIMNSSGSTGLP 205
Query: 256 KGVLHTTGGYMVHTATTFKYAFDYKP---SDVYWCTADCGWITGHS----YVTYGPMLNG 308
KGV + H +++ P + + TA + H + T G ++ G
Sbjct: 206 KGVA------LPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICG 259
Query: 309 ASVVV---FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 365
VV+ FE RS + YK+ PTL + + + +Y +L
Sbjct: 260 FRVVLMYRFEEELFL----RS---LQDYKIQSALLVPTLFSFFAK--STLIDKYDLSNLH 310
Query: 366 VLGSVGEPINPS---AWRWFFNVVGDSRCPISDTWWQTET-GGFMITPLPGAWPQKPGSA 421
+ S G P++ A F++ G I + TET +ITP KPG+
Sbjct: 311 EIASGGAPLSKEVGEAVAKRFHLPG-----IRQGYGLTETTSAILITP---EGDDKPGAV 362
Query: 422 --TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGY 479
PFF + V +D G + G LC++ P + E K G+
Sbjct: 363 GKVVPFFEAKVVDLD-TGKTLGVNQRGELCVRG--PMIMSGYVNNPEATNALIDKD--GW 417
Query: 480 YFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXK 539
+GD D+D + ++ R+ +I G+++ AE+ES L+ HP
Sbjct: 418 LHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDA 477
Query: 540 GQGIYAFVTLVEGVPYSE----ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 595
G+ A V L G +E + S V +K G D++ PK +GK+
Sbjct: 478 GELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEV------PKGLTGKLD 531
Query: 596 RRILRKI 602
R +R+I
Sbjct: 532 ARKIREI 538
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 125/318 (39%), Gaps = 63/318 (19%)
Query: 36 DVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQV 95
D+R +E G C + L A D VA+ EA++ LTY L ++
Sbjct: 60 DLRPTGPAVERAPAGA---CVHELFEAQAARAPDAVALLHEADE------LTYGALNERA 110
Query: 96 CQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMD 155
+LA+ L +GV G V ++L ++ +A+LA + G ++++ F + LA + D
Sbjct: 111 NRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLED 170
Query: 156 CKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQD 215
+++TS + ++ L E+++A
Sbjct: 171 TGAPLLVTSRPL---------------------SGRLTGTTTLYVEDEAAS--------- 200
Query: 216 GRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY 275
P V ED +++TSGSTG+PKGV+ H A T Y
Sbjct: 201 -----------DAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSP------HRALTGTY 243
Query: 276 -AFDYK---PSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVD 331
DY P +V+ + W +G +L GA V+ G PD ++V
Sbjct: 244 LGQDYAGFGPDEVFLQCSPVSW-DAFGLELFGALLFGARCVLQSG--QNPDPLEIGELVA 300
Query: 332 KYKVTIFYTAPTLVRSLM 349
++ VT+ + +L L+
Sbjct: 301 RHGVTMLQLSASLFNFLV 318
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 121/541 (22%), Positives = 191/541 (35%), Gaps = 87/541 (16%)
Query: 80 PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSV 139
P LT+++L +V +A L G++ V + P ++ IA+LA R+GAV ++
Sbjct: 24 PARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPAL 83
Query: 140 VFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT 199
+ S LA+ I KRG + + D +SG +
Sbjct: 84 LNPRLKSAELAELI--------------KRGEMTAAVIAVGRQVADAIFQSGSGARIIFL 129
Query: 200 YENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVL 259
+ + R+ + G I E + P F+ YTSG+TG PK
Sbjct: 130 GD----LVRDGEPYSYGPPI-------------EDPQREPAQPAFIFYTSGTTGLPKA-- 170
Query: 260 HTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM-------------- 305
A + A + S V + + G G V G M
Sbjct: 171 ----------AIIPQRAAE---SRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVA 217
Query: 306 ---LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 362
L+G VV+ E P + +V + +VT + PT + +L +
Sbjct: 218 ALALDGTYVVIEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLD 272
Query: 363 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSAT 422
SLR + G + + + + I T + +M P K G+
Sbjct: 273 SLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTT-EAMNSLYMRQP-------KTGTEM 324
Query: 423 FPFFGVQPVIVDEKG----VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 478
P F + IV G + GE G L + +S AF G + E T K G
Sbjct: 325 APGFFSEVRIVRIGGGVDEIVANGE-EGELIVAAS-DSAF---VGYLNQPEATAEKLQDG 379
Query: 479 YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXX 538
+Y T D +G + GRVDD+I G I +E+E L + P
Sbjct: 380 WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQR 439
Query: 539 KGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRI 598
GQ + A V G S + + + ++ F P + LPK K++RR
Sbjct: 440 WGQSVTACVVPRLGETLSADALDTFCRS--SELADFKRPKRYFILDQLPKNALNKVLRRQ 497
Query: 599 L 599
L
Sbjct: 498 L 498
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 121/541 (22%), Positives = 191/541 (35%), Gaps = 87/541 (16%)
Query: 80 PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSV 139
P LT+++L +V +A L G++ V + P ++ IA+LA R+GAV ++
Sbjct: 24 PARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPAL 83
Query: 140 VFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT 199
+ S LA+ I KRG + + D +SG +
Sbjct: 84 LNPRLKSAELAELI--------------KRGEMTAAVIAVGRQVADAIFQSGSGARIIFL 129
Query: 200 YENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVL 259
+ + R+ + G I E + P F+ YTSG+TG PK
Sbjct: 130 GD----LVRDGEPYSYGPPI-------------EDPQREPAQPAFIFYTSGTTGLPKA-- 170
Query: 260 HTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM-------------- 305
A + A + S V + + G G V G M
Sbjct: 171 ----------AIIPQRAAE---SRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVA 217
Query: 306 ---LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 362
L+G VVV E P + +V + +VT + PT + +L +
Sbjct: 218 ALALDGTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLD 272
Query: 363 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSAT 422
SLR + G + + + + I T + +M P K G+
Sbjct: 273 SLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTT-EAMNSLYMRQP-------KTGTEM 324
Query: 423 FPFFGVQPVIVDEKG----VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 478
P F + IV G + GE G L + +S AF G + + T K G
Sbjct: 325 APGFFSEVRIVRIGGGVDEIVANGE-EGELIVAAS-DSAF---VGYLNQPQATAEKLQDG 379
Query: 479 YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXX 538
+Y T D +G + GRVDD+I G I +E+E L + P
Sbjct: 380 WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQR 439
Query: 539 KGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRI 598
GQ + A V G S + + + ++ F P + LPK K++RR
Sbjct: 440 WGQSVTACVVPRLGETLSADALDTFCRS--SELADFKRPKRYFILDQLPKNALNKVLRRQ 497
Query: 599 L 599
L
Sbjct: 498 L 498
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 120/541 (22%), Positives = 191/541 (35%), Gaps = 87/541 (16%)
Query: 80 PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSV 139
P LT+++L +V +A L G++ V + P ++ IA+LA R+GAV ++
Sbjct: 24 PARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPAL 83
Query: 140 VFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT 199
+ S LA+ I KRG + + D +SG +
Sbjct: 84 LNPRLKSAELAELI--------------KRGEMTAAVIAVGRQVADAIFQSGSGARIIFL 129
Query: 200 YENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVL 259
+ + R+ + G I E + P F+ YTSG+TG PK
Sbjct: 130 GD----LVRDGEPYSYGPPI-------------EDPQREPAQPAFIFYTSGTTGLPKA-- 170
Query: 260 HTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM-------------- 305
A + A + S V + + G G V G M
Sbjct: 171 ----------AIIPQRAAE---SRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVA 217
Query: 306 ---LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 362
L+G VVV E P + +V + +VT + PT + +L +
Sbjct: 218 ALALDGTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLD 272
Query: 363 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSAT 422
SLR + G + + + + + + TE + P K G+
Sbjct: 273 SLRHVTFAGATMPDAVLETVHQHLPGEKV---NAYGTTEAMNSLYMRQP-----KTGTEM 324
Query: 423 FPFFGVQPVIVDEKG----VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 478
P F + IV G + GE G L + +S AF G + + T K G
Sbjct: 325 APGFFSEVRIVRIGGGVDEIVANGE-EGELIVAAS-DSAF---VGYLNQPQATAEKLQDG 379
Query: 479 YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXX 538
+Y T D +G + GRVDD+I G I +E+E L + P
Sbjct: 380 WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQR 439
Query: 539 KGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRI 598
GQ + A V G S + + + ++ F P + LPK K++RR
Sbjct: 440 WGQSVTACVVPRLGETLSADALDTFCRS--SELADFKRPKRYFILDQLPKNALNKVLRRQ 497
Query: 599 L 599
L
Sbjct: 498 L 498
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 120/541 (22%), Positives = 191/541 (35%), Gaps = 87/541 (16%)
Query: 80 PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSV 139
P LT+++L +V +A L G++ V + P ++ IA+LA R+GAV ++
Sbjct: 24 PARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPAL 83
Query: 140 VFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT 199
+ S LA+ I KRG + + D +SG +
Sbjct: 84 LNPRLKSAELAELI--------------KRGEMTAAVIAVGRQVADAIFQSGSGARIIFL 129
Query: 200 YENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVL 259
+ + R+ + G I E + P F+ YTSG+TG PK
Sbjct: 130 GD----LVRDGEPYSYGPPI-------------EDPQREPAQPAFIFYTSGTTGLPKA-- 170
Query: 260 HTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM-------------- 305
A + A + S V + + G G V G M
Sbjct: 171 ----------AIIPQRAAE---SRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVA 217
Query: 306 ---LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 362
L+G VVV E P + +V + +VT + PT + +L +
Sbjct: 218 ALALDGTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLD 272
Query: 363 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSAT 422
SLR + G + + + + + + TE + P K G+
Sbjct: 273 SLRHVTFAGATMPDAVLETVHQHLPGEKV---NGYGTTEAMNSLYMRQP-----KTGTEM 324
Query: 423 FPFFGVQPVIVDEKG----VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 478
P F + IV G + GE G L + +S AF G + + T K G
Sbjct: 325 APGFFSEVRIVRIGGGVDEIVANGE-EGELIVAAS-DSAF---VGYLNQPQATAEKLQDG 379
Query: 479 YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXX 538
+Y T D +G + GRVDD+I G I +E+E L + P
Sbjct: 380 WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQR 439
Query: 539 KGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRI 598
GQ + A V G S + + + ++ F P + LPK K++RR
Sbjct: 440 WGQSVTACVVPRLGETLSADALDTFCRS--SELADFKRPKRYFILDQLPKNALNKVLRRQ 497
Query: 599 L 599
L
Sbjct: 498 L 498
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 116/528 (21%), Positives = 189/528 (35%), Gaps = 61/528 (11%)
Query: 80 PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSV 139
P LT+++L +V +A L G++ V + P ++ IA+LA R+GAV ++
Sbjct: 24 PARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPAL 83
Query: 140 VFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT 199
+ S LA+ I KRG + + D +SG +
Sbjct: 84 LNPRLKSAELAELI--------------KRGEXTAAVIAVGRQVADAIFQSGSGARIIFL 129
Query: 200 YENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVL 259
+ + R+ + G I E + P F+ YTSG+TG PK +
Sbjct: 130 GD----LVRDGEPYSYGPPI-------------EDPQREPAQPAFIFYTSGTTGLPKAAI 172
Query: 260 ---HTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM-LNGASVVVFE 315
++ +T + + +V + G V + L+G VVV E
Sbjct: 173 IPQRAAESRVLFXST--QVGLRHGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEE 230
Query: 316 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPIN 375
P + +V + +VT + PT + +L + SLR + G
Sbjct: 231 FRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATXP 285
Query: 376 PSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE 435
+ + + I + TE + P K G+ P F + IV
Sbjct: 286 DAVLETVHQHLPGEKVNI---YGTTEAXNSLYXRQP-----KTGTEXAPGFFSEVRIVRI 337
Query: 436 KG----VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKD 491
G + GE G L + +S AF G + + T K G+Y T D +
Sbjct: 338 GGGVDEIVANGE-EGELIVAAS-DSAF---VGYLNQPQATAEKLQDGWYRTSDVAVWTPE 392
Query: 492 GYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVE 551
G + GRVDD I G I +E+E L + P GQ + A V
Sbjct: 393 GTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRL 452
Query: 552 GVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 599
G S + + + ++ F P + LPK K++RR L
Sbjct: 453 GETLSADALDTFCRS--SELADFKRPKRYFILDQLPKNALNKVLRRQL 498
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 146/384 (38%), Gaps = 53/384 (13%)
Query: 239 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 298
AED +++YTSG+TG PKGV + A PS V+ + D W+ HS
Sbjct: 174 AEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGA--------PS-VFDFSGDDRWLLFHS 224
Query: 299 -------YVTYGPMLNGASVVVFEG-APTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 350
+ +G GA +VV A P+ + I+D+ VT+ PT +L
Sbjct: 225 LSFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAV-IIDR-GVTVINQTPTAFLAL-- 280
Query: 351 DGNEYVTRYSR--KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTW----WQTETGG 404
E R R LR + GE + R + G R + + + T
Sbjct: 281 --TEAAVRGGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTF 338
Query: 405 FMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGD 464
IT A P FG + +V + G ++ +G L W + G
Sbjct: 339 EEITEAYLAQDASIIGRALPSFGTR--VVGDDGRDVAPGETGEL-----WLSGAQLAEGY 391
Query: 465 HERYETTYFKPFPG-----------YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGT 513
R E T K FP YY TGD S DG GR D I + G+RI
Sbjct: 392 LRRPELTAEK-FPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIEL 450
Query: 514 AEVESALVSHPQCXXXXXXXXXXXXKG-QGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 572
+++E+A+ H + + A+V + ELR ++ +
Sbjct: 451 SDIETAVRRHDDVVDAVVTVREFKPGDLRLVCAYVAREGSATTARELRNH----IKTLLP 506
Query: 573 AFAAPDKIHWAPGLPKTRSGKIMR 596
A+ P + PGLP+T +GK+ R
Sbjct: 507 AYMHPARYLPLPGLPRTVNGKVDR 530
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 120/541 (22%), Positives = 190/541 (35%), Gaps = 87/541 (16%)
Query: 80 PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSV 139
P LT+++L +V +A L G++ V + P ++ IA+LA R+GAV ++
Sbjct: 24 PARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPAL 83
Query: 140 VFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT 199
+ S LA+ I KRG + + D +SG +
Sbjct: 84 LNPRLKSAELAELI--------------KRGEMTAAVIAVGRQVADAIFQSGSGARIIFL 129
Query: 200 YENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVL 259
+ + R+ + G I E + P F+ YTSG+TG PK
Sbjct: 130 GD----LVRDGEPYSYGPPI-------------EDPQREPAQPAFIFYTSGTTGLPKA-- 170
Query: 260 HTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM-------------- 305
A + A + S V + + G G V G M
Sbjct: 171 ----------AIIPQRAAE---SRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVA 217
Query: 306 ---LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 362
L+G VVV E P + +V + +VT + PT + +L +
Sbjct: 218 ALALDGTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLD 272
Query: 363 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSAT 422
SLR + G + + + + I T + +M P K G+
Sbjct: 273 SLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTT-EAMNSLYMRQP-------KTGTEM 324
Query: 423 FPFFGVQPVIVDEKG----VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 478
P F + IV G + GE G L + +S AF G + + T K G
Sbjct: 325 APGFFSEVRIVRIGGGVDEIVANGE-EGELIVAAS-DSAF---VGYLNQPQATAEKLQDG 379
Query: 479 YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXX 538
+Y T D +G + GRV D+I G I +E+E L + P
Sbjct: 380 WYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQR 439
Query: 539 KGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRI 598
GQ + A V G S + + + ++ F P + LPK K++RR
Sbjct: 440 WGQSVTACVVPRLGETLSADALDTFCRS--SELADFKRPKRYFILDQLPKNALNKVLRRQ 497
Query: 599 L 599
L
Sbjct: 498 L 498
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 28/177 (15%)
Query: 82 VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF 141
++ T TY QL Q +A L+ G K GD V++ + L A L C G + ++
Sbjct: 37 LEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY 96
Query: 142 AGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE 201
++++D ++V S V A H+K L+ K + L
Sbjct: 97 P-----PAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIPAIAL--- 148
Query: 202 NQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGV 258
+S ++ WQ PT + + D FL YTSGST PKGV
Sbjct: 149 -ESIELNRSSSWQ--------------PTS-----IKSNDIAFLQYTSGSTXHPKGV 185
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 111/546 (20%), Positives = 206/546 (37%), Gaps = 109/546 (19%)
Query: 85 TLTYSQLLQQVCQLANYL-KDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 143
+LTY +L +Q + A + K I +K +++Y M + ++ L + G + V
Sbjct: 26 SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLS 85
Query: 144 FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 203
S+ +A+ I +++I + +G+S+D + + Q
Sbjct: 86 IPSERIAKIIESSGAELLIHA-------------------------AGLSID-AVGQQIQ 119
Query: 204 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGV----- 258
+ E + + G + + +WV + +++YTSGSTG PKGV
Sbjct: 120 TVSAEELLENEGG-------------SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAA 166
Query: 259 ------------LHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPML 306
+GG + F +FD D+Y C G + + +
Sbjct: 167 NLQSFTDWICADFPVSGGKIFLNQAPF--SFDLSVMDLYPCLQSGGTL----HCVTKDAV 220
Query: 307 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL-- 364
N V+ ++ + K + ++ + P+ V+ + D +S+ L
Sbjct: 221 NKPKVL--------------FEELKKSGLNVWTSTPSFVQMCLMDPG-----FSQDLLPH 261
Query: 365 -RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATF 423
GE + S + ++ I +T+ TE +T + S +
Sbjct: 262 ADTFMFCGEVLPVSVAKALLERFPKAK--IFNTYGPTE-ATVAVTSVEITNDVISRSESL 318
Query: 424 PFFGVQP----VIVDEKGVEI-EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 478
P +P I+DE+G + EGE G + I + P R G+ E E +F
Sbjct: 319 PVGFAKPDMNIFIMDEEGQPLPEGE-KGEIVI--AGPSVSRGYLGEPELTEKAFFSHEGQ 375
Query: 479 Y-YFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXX 537
+ Y TGD +DG + GR+D I + G+R+ E+E H +
Sbjct: 376 WAYRTGD-AGFIQDGQIFCQGRLDFQIKLHGYRMELEEIE----FHVRQSQYVRSAVVIP 430
Query: 538 XKGQGIYAFVTLVEGVPYSEELRKSLVL--AVRKQIG----AFAAPDKIHWAPGLPKTRS 591
+ G ++ + VP E K L A++K++ A+ P K + + T +
Sbjct: 431 YQPNGTVEYL-IAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTAN 489
Query: 592 GKIMRR 597
GKI R+
Sbjct: 490 GKIDRK 495
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 86/399 (21%), Positives = 146/399 (36%), Gaps = 60/399 (15%)
Query: 218 DIWWQDVVPK-YPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 276
D + VVPK P+ + +D +++TSG+TG K V T + H A+
Sbjct: 140 DTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQT---FRNHYASAI--- 193
Query: 277 FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKY--- 333
C G+ ++++ P+ + + + V A G + IVDK+
Sbjct: 194 ---------GCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVI---EGFTVRIVDKFNAE 241
Query: 334 ---------KVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS-VGEPINPSAWRWFF 383
++T P + LM+ G Y+ + + + G+ + + +A ++
Sbjct: 242 QILTMIKNERITHISLVPQTLNWLMQQGLH--EPYNLQKILLGGAKLSATMIETALQY-- 297
Query: 384 NVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGE 443
PI +++ TET +T P +P + P VD K E
Sbjct: 298 ------NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMP-----SANVDVKIKNPNKE 346
Query: 444 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP-GYYFTGDGCSRDKDGYHWLTGRVDD 502
G L IK + + G Y T F GY+ TGD D +GY + R D
Sbjct: 347 GHGELMIKGA-----NVMNG--YLYPTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKD 399
Query: 503 VINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKS 562
+I G I ++E+ P GQ V + V S+ +
Sbjct: 400 LIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQ-----VPKLYFVSESDISKAQ 454
Query: 563 LVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601
L+ + K + + P LP T +GK+ R L +
Sbjct: 455 LIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYR 493
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 127/573 (22%), Positives = 188/573 (32%), Gaps = 112/573 (19%)
Query: 82 VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG--AVHSV 139
++ L Y L + A L + +KKGD V + E A AC G AV
Sbjct: 45 LEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLA 104
Query: 140 VFAGFS-----SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 194
+ G S L + C+P +IT + +V+AA
Sbjct: 105 IPXGVGQRDSWSAKLQGLLASCQPAAIITGD---------EWLPLVNAA----------- 144
Query: 195 DVCLTYENQSAMTRENT--KWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGST 252
T++N + K D+ Q VP D +L YTSGST
Sbjct: 145 ----THDNPELHVLSHAWFKALPEADVALQRPVPN-------------DIAYLQYTSGST 187
Query: 253 GKPKGVLHTTGGYMVHTATTFKYAFDYKPSD--VYWCT--ADCGWITGHSYVTYGPMLNG 308
P+GV+ T + +P D V W D G + P+
Sbjct: 188 RFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYHDXGLVG----FLLTPVATQ 243
Query: 309 ASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY-VTRYSRKSLRVL 367
SV + ++ K + T+ P R NE + RV
Sbjct: 244 LSVDYLRTQDFAXRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVA 303
Query: 368 GSVGEPINPSAWRWF---FNVVGDSRCPISDTW----------WQTETGGFMITPLPGAW 414
G EPI+ F F V + + E G ++ +
Sbjct: 304 GIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAENALAVSFSDEASGVVVNEVDRDI 363
Query: 415 PQKPGSATFPFFGVQPV--------IVDEKGVEIEGECS--------GYLCIKSSWPGAF 458
+ G A P + V + E G+EI E G++CI S P
Sbjct: 364 LEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGXPVAERVVGHICI--SGPSLX 421
Query: 459 RTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVES 518
+GD + G+ TGD DGY ++TGR+ D+I + G I ++E
Sbjct: 422 SGYFGDQVSQDEIAAT---GWLDTGD-LGYLLDGYLYVTGRIKDLIIIRGRNIWPQDIEY 477
Query: 519 ALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYS-------EELRKSLVLAVRKQI 571
P+ G I AFVT E + EE R L+ A+ +I
Sbjct: 478 IAEQEPEI-----------HSGDAI-AFVTAQEKIILQIQCRISDEERRGQLIHALAARI 525
Query: 572 GA-FAAPDKIHWAP--GLPKTRSGKIMRRILRK 601
+ F I P +P+T SGK R +K
Sbjct: 526 QSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKK 558
>pdb|4GS5|A Chain A, The Crystal Structure Of Acyl-Coa Synthetase
(Amp-Forming)AMP-Acid Ligase Ii-Like Protein From
Dyadobacter Fermentans Dsm 18053
Length = 358
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 139/362 (38%), Gaps = 64/362 (17%)
Query: 244 FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYG 303
F+L+TSGSTG PK + T A T K A P + G+I G + G
Sbjct: 41 FVLHTSGSTGXPKPITVTRAQLAASAAXTGK-ALSLGPGTRALVCLNVGYIAGLXXLVRG 99
Query: 304 PMLNGASVVVFEGAPT-YPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 362
L+ V PT P +G +D P ++S++ + + + R
Sbjct: 100 XELDWELTVT---EPTANPLAG-----LDHADFDFVAXVPXQLQSILEN-SATSGQVDRL 150
Query: 363 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFM-ITPLPGAWPQKPGSA 421
+LG G P+N + + D P+ ++ TET + + L G P+ S
Sbjct: 151 GKVLLG--GAPVNHA----LAXQISDLAXPVYQSYGXTETVSHVALKALNG--PE--ASE 200
Query: 422 TFPFF-GVQPVIVDEKG-VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGY 479
+ F G+Q VDE+G + I G + ++
Sbjct: 201 LYVFLPGIQ-YGVDERGCLHISGAVTNGQTVQ---------------------------- 231
Query: 480 YFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVE---SALVSHPQCXXXXXXXXXX 536
T D + + W+ GR D+VIN G +I +++ +A+ H
Sbjct: 232 --TNDLVEIHGNAFQWI-GRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEP 288
Query: 537 XXK-GQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 595
K GQ + V ++E E L + L +R ++ + P I++A KT++ KI
Sbjct: 289 DAKLGQKL---VLVIENA-XPEALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKID 344
Query: 596 RR 597
+R
Sbjct: 345 KR 346
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 72/187 (38%), Gaps = 42/187 (22%)
Query: 81 GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA---CARIGAVH 137
GV TLT+SQL ++ +A L G GD V+I P +E +A L RI
Sbjct: 54 GVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPL 112
Query: 138 SVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAAL---DECAKSGISV 194
SV G + + + D P ++T+++ + D+V E S I V
Sbjct: 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSA--------VDDVVQHVARRPGESPPSIIEV 164
Query: 195 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 254
D+ +E+ +YP+ +L YTSGST
Sbjct: 165 DLLDLDAPNGYTFKED----------------EYPSTA-----------YLQYTSGSTRT 197
Query: 255 PKGVLHT 261
P GV+ +
Sbjct: 198 PAGVVXS 204
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/261 (19%), Positives = 95/261 (36%), Gaps = 60/261 (22%)
Query: 69 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 128
D+ A W DA +TY QL + LA+++ +++Y M E+ I L
Sbjct: 16 DQTAFVWR------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFL 69
Query: 129 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 188
C + G + V +D + + + K+++++ AV + D + +
Sbjct: 70 GCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVT----------VTDLPVRIVS 119
Query: 189 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 248
+ + D+ T++ + P++ K ++ +++YT
Sbjct: 120 EDNLK-DIFFTHKGNTPN-------------------PEHAVK-------GDENFYIIYT 152
Query: 249 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNG 308
SGSTG PKGV T + T W D TG ++ P
Sbjct: 153 SGSTGNPKGVQITYNCLVSFTK---------------WAVEDFNLQTGQVFLNQAPFSFD 197
Query: 309 ASVVVFEGAPTYPDSGRSWDI 329
SV+ + P+ G W I
Sbjct: 198 LSVM--DIYPSLVTGGTLWAI 216
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 8/124 (6%)
Query: 480 YFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXK 539
Y TGD + +G + GR+D I + G+R+ E+E L + C K
Sbjct: 379 YKTGDAGYVE-NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRA---CSYVEGAVIVPIKK 434
Query: 540 GQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGA----FAAPDKIHWAPGLPKTRSGKIM 595
G+ + +V +S E L A++K++ + P K + +P T +GK+
Sbjct: 435 GEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVD 494
Query: 596 RRIL 599
R+ L
Sbjct: 495 RKKL 498
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/261 (19%), Positives = 95/261 (36%), Gaps = 60/261 (22%)
Query: 69 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 128
D+ A W DA +TY QL + LA+++ +++Y M E+ I L
Sbjct: 16 DQTAFVWR------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFL 69
Query: 129 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 188
C + G + V +D + + + K+++++ AV + D + +
Sbjct: 70 GCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVT----------VTDLPVRIVS 119
Query: 189 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 248
+ + D+ T++ + P++ K ++ +++YT
Sbjct: 120 EDNLK-DIFFTHKGNTPN-------------------PEHAVK-------GDENFYIIYT 152
Query: 249 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNG 308
SGSTG PKGV T + T W D TG ++ P
Sbjct: 153 SGSTGNPKGVQITYNCLVSFTK---------------WAVEDFNLQTGQVFLNQAPFSFD 197
Query: 309 ASVVVFEGAPTYPDSGRSWDI 329
SV+ + P+ G W I
Sbjct: 198 LSVM--DIYPSLVTGGTLWAI 216
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 8/124 (6%)
Query: 480 YFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXK 539
Y TGD + +G + GR+D I + G+R+ E+E L + C K
Sbjct: 379 YKTGDAGYVE-NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRA---CSYVEGAVIVPIKK 434
Query: 540 GQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGA----FAAPDKIHWAPGLPKTRSGKIM 595
G+ + +V +S E L A++K++ + P K + +P T +GK+
Sbjct: 435 GEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVD 494
Query: 596 RRIL 599
R+ L
Sbjct: 495 RKKL 498
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 72/187 (38%), Gaps = 42/187 (22%)
Query: 81 GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA---CARIGAVH 137
GV TLT+SQL ++ +A L G GD V+I P +E +A L RI
Sbjct: 54 GVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPL 112
Query: 138 SVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAAL---DECAKSGISV 194
SV G + + + D P ++T+++ + D+V E S I V
Sbjct: 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSA--------VDDVVQHVARRPGESPPSIIEV 164
Query: 195 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 254
D+ +E+ +YP+ +L YTSGST
Sbjct: 165 DLLDLDAPNGYTFKED----------------EYPSTA-----------YLQYTSGSTRT 197
Query: 255 PKGVLHT 261
P GV+ +
Sbjct: 198 PAGVVMS 204
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 16/62 (25%)
Query: 197 CLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPK 256
L +NQS + EN QD DI + YP E +DA +LLYTSGSTG PK
Sbjct: 148 VLDTKNQSFI--ENLSTQDTSDI-----LNNYP-----ENLDA----YLLYTSGSTGTPK 191
Query: 257 GV 258
GV
Sbjct: 192 GV 193
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 82/392 (20%), Positives = 148/392 (37%), Gaps = 43/392 (10%)
Query: 225 VPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF-DYKPSD 283
+P P A+ ++ ++SG+TG+PK + T G T +F + P
Sbjct: 149 LPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGI---TRLCLGQSFLAFAPQM 205
Query: 284 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPT 343
+ + + + +G +LNG V+ + P P R I ++ + + TA +
Sbjct: 206 RFLVNSPLSF-DAATLEIWGALLNGGCCVLNDLGPLDPGVLRQL-IGERGADSAWLTA-S 262
Query: 344 LVRSLMRDGNEYVTRYSRKSLRVLGSVGEPIN-PSAWRWFFNVVGDSRCPISDTWWQTET 402
L +L+ + + LR L + G+ ++ P R R + + + TE
Sbjct: 263 LFNTLVDLDPDCL-----GGLRQLLTGGDILSVPHVRRALLR---HPRLHLVNGYGPTEN 314
Query: 403 GGF----MITPLPGAWPQKP-GSATFPFFGVQPVIVDEKGVEI-EGECSGYLCIKSSWPG 456
F ++T P G A G +++DE G EI E + +G I + G
Sbjct: 315 TTFTCCHVVTDDDLEEDDIPIGKA---IAGTAVLLLDEHGQEIAEPDRAGE--IVAFGAG 369
Query: 457 AFRTLYGDHERYETTYFK-PFPGY----YFTGDGCSRDKDGYHWLTGRVDDVINVSGHRI 511
+ D R ++ + P+ G Y TGD D+ G GR D + ++G+R+
Sbjct: 370 LAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRL 429
Query: 512 GTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI 571
+E P Q + A+ + P A+ +Q+
Sbjct: 430 DLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQ----------ALLRQL 479
Query: 572 GAFAAPDKIHWAPGLPKTRSGKIMR-RILRKI 602
+ P LP T GK+ R +LR++
Sbjct: 480 PTWQRPHACVRVEALPLTAHGKLDRAALLRRL 511
>pdb|2PAJ|A Chain A, Crystal Structure Of An Amidohydrolase From An
Environmental Sample Of Sargasso Sea
Length = 492
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 230 TKCEV--EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP------ 281
T C + WV+ LF S G+P G+ T ++ T F+ FD +
Sbjct: 64 TDCVIYPAWVNTHHHLF---QSLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAAR 120
Query: 282 -SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGA 317
+ + C + H+YV Y M +S ++FE A
Sbjct: 121 IGLIELARSGCATVADHNYVYYPGMPFDSSAILFEEA 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,958,982
Number of Sequences: 62578
Number of extensions: 968798
Number of successful extensions: 1984
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1797
Number of HSP's gapped (non-prelim): 110
length of query: 631
length of database: 14,973,337
effective HSP length: 105
effective length of query: 526
effective length of database: 8,402,647
effective search space: 4419792322
effective search space used: 4419792322
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)