Query 006776
Match_columns 631
No_of_seqs 273 out of 2980
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 08:39:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ry2_A Acetyl-coenzyme A synth 100.0 5E-106 2E-110 895.7 58.5 618 1-628 29-660 (663)
2 1pg4_A Acetyl-COA synthetase; 100.0 4E-105 1E-109 888.6 64.4 619 1-629 27-645 (652)
3 3etc_A AMP-binding protein; ad 100.0 4.2E-83 1.5E-87 701.5 58.7 524 45-605 48-579 (580)
4 3c5e_A Acyl-coenzyme A synthet 100.0 1.7E-80 5.8E-85 680.0 56.4 522 43-606 28-563 (570)
5 3ni2_A 4-coumarate:COA ligase; 100.0 1.9E-80 6.4E-85 676.3 51.4 506 54-605 23-535 (536)
6 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.8E-80 1.3E-84 674.0 47.4 509 54-611 26-537 (539)
7 4fuq_A Malonyl COA synthetase; 100.0 1.5E-79 5.2E-84 663.4 51.4 497 57-606 4-501 (503)
8 3r44_A Fatty acyl COA syntheta 100.0 1.2E-79 4.3E-84 666.4 48.2 499 54-607 17-515 (517)
9 3g7s_A Long-chain-fatty-acid-- 100.0 4E-80 1.4E-84 675.7 43.5 512 54-606 20-543 (549)
10 2d1s_A Luciferase, luciferin 4 100.0 1.1E-78 3.8E-83 663.3 52.5 509 55-609 27-547 (548)
11 1t5h_X 4-chlorobenzoyl COA lig 100.0 4.7E-78 1.6E-82 652.7 54.0 487 54-604 3-503 (504)
12 2v7b_A Benzoate-coenzyme A lig 100.0 1.1E-77 3.9E-82 654.0 51.1 512 45-601 16-528 (529)
13 1v25_A Long-chain-fatty-acid-C 100.0 1.1E-78 3.8E-83 662.7 40.1 506 55-607 20-538 (541)
14 3o83_A Peptide arylation enzym 100.0 1E-78 3.5E-83 663.4 36.9 506 54-605 31-540 (544)
15 3fce_A D-alanine--poly(phospho 100.0 2.5E-77 8.5E-82 648.7 45.7 496 55-606 3-505 (512)
16 3rix_A Luciferase, luciferin 4 100.0 1.3E-78 4.4E-83 663.9 35.7 512 54-607 21-543 (550)
17 3rg2_A Enterobactin synthase c 100.0 4.6E-76 1.6E-80 651.9 51.6 504 55-606 29-535 (617)
18 3e7w_A D-alanine--poly(phospho 100.0 3.4E-76 1.2E-80 639.2 48.7 495 55-606 3-504 (511)
19 3ivr_A Putative long-chain-fat 100.0 1.4E-77 4.6E-82 650.2 36.4 494 54-607 7-503 (509)
20 1amu_A GRSA, gramicidin synthe 100.0 1.4E-76 4.7E-81 648.1 43.5 484 54-604 40-528 (563)
21 4gr5_A Non-ribosomal peptide s 100.0 1.6E-77 5.6E-82 657.7 36.2 485 54-602 76-568 (570)
22 3l8c_A D-alanine--poly(phospho 100.0 4.6E-76 1.6E-80 640.4 44.3 500 54-607 5-514 (521)
23 4dg8_A PA1221; ANL superfamily 100.0 1.8E-75 6.2E-80 644.4 45.4 480 54-607 28-515 (620)
24 3nyq_A Malonyl-COA ligase; A/B 100.0 1.3E-75 4.5E-80 632.6 40.3 477 52-601 21-504 (505)
25 3tsy_A Fusion protein 4-coumar 100.0 2.3E-75 7.8E-80 679.3 41.3 513 54-607 62-584 (979)
26 3ipl_A 2-succinylbenzoate--COA 100.0 2.1E-74 7.1E-79 624.3 43.5 495 55-606 3-498 (501)
27 3kxw_A Saframycin MX1 syntheta 100.0 4.2E-73 1.5E-77 627.1 40.3 510 54-606 12-568 (590)
28 3ite_A SIDN siderophore synthe 100.0 1.2E-73 4.1E-78 626.9 31.5 513 55-620 22-560 (562)
29 3gqw_A Fatty acid AMP ligase; 100.0 3.2E-72 1.1E-76 618.6 40.3 506 54-609 22-567 (576)
30 2vsq_A Surfactin synthetase su 100.0 1.4E-71 4.9E-76 663.1 43.3 489 54-604 465-959 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 1.9E-58 6.6E-63 497.1 27.7 406 54-499 25-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.9E-53 6.6E-58 437.6 24.6 316 239-606 36-355 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 2.9E-49 1E-53 419.5 27.7 331 237-598 82-430 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 5.5E-48 1.9E-52 410.6 26.6 336 237-600 89-439 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 1.2E-47 4E-52 407.3 26.8 333 237-598 87-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 2.5E-29 8.4E-34 260.2 15.6 237 237-509 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.7 1.6E-16 5.5E-21 132.3 9.0 95 498-596 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.6 1E-15 3.6E-20 127.1 9.7 95 498-597 1-102 (109)
39 4eql_A 4-substituted benzoates 99.1 4.5E-09 1.5E-13 111.5 18.3 133 361-523 296-447 (581)
40 4b2g_A GH3-1 auxin conjugating 99.0 1.3E-08 4.5E-13 108.0 17.4 159 361-550 301-493 (609)
41 4epl_A Jasmonic acid-amido syn 98.9 2.5E-08 8.7E-13 105.4 15.4 161 361-551 301-489 (581)
42 3qov_A Phenylacetate-coenzyme 90.5 1.7 5.8E-05 44.6 11.8 97 69-166 86-187 (436)
43 2y27_A Phenylacetate-coenzyme 89.8 2 6.8E-05 44.1 11.6 99 67-166 88-191 (437)
44 2y4o_A Phenylacetate-coenzyme 89.3 2.1 7.3E-05 44.0 11.5 99 67-166 90-193 (443)
45 3hgu_A EHPF; phenazine, antibi 83.6 4.4 0.00015 40.4 9.8 99 67-167 89-215 (369)
46 3ipl_A 2-succinylbenzoate--COA 80.9 18 0.00061 37.6 13.7 96 67-166 161-260 (501)
47 3o83_A Peptide arylation enzym 72.9 31 0.0011 36.2 12.9 96 67-166 189-290 (544)
48 1mdb_A 2,3-dihydroxybenzoate-A 72.4 38 0.0013 35.5 13.4 96 67-166 180-281 (539)
49 2d1s_A Luciferase, luciferin 4 70.8 17 0.0006 38.2 10.3 96 69-166 192-292 (548)
50 3r44_A Fatty acyl COA syntheta 70.4 40 0.0014 35.1 13.0 95 67-166 168-267 (517)
51 3rix_A Luciferase, luciferin 4 69.1 22 0.00075 37.4 10.7 98 68-166 189-290 (550)
52 3fce_A D-alanine--poly(phospho 66.7 26 0.0009 36.4 10.6 97 67-166 142-244 (512)
53 3ivr_A Putative long-chain-fat 66.0 51 0.0017 34.1 12.6 97 67-167 158-258 (509)
54 1v25_A Long-chain-fatty-acid-C 64.5 61 0.0021 33.9 13.0 100 67-167 174-277 (541)
55 3g7s_A Long-chain-fatty-acid-- 62.6 45 0.0016 34.9 11.6 105 238-349 32-139 (549)
56 3e7w_A D-alanine--poly(phospho 61.8 47 0.0016 34.4 11.4 97 67-166 141-243 (511)
57 1t5h_X 4-chlorobenzoyl COA lig 60.3 50 0.0017 34.1 11.3 96 67-166 151-253 (504)
58 3kxw_A Saframycin MX1 syntheta 58.9 40 0.0014 35.7 10.4 96 67-165 165-268 (590)
59 3rg2_A Enterobactin synthase c 57.9 1.1E+02 0.0037 32.5 13.7 96 67-166 182-283 (617)
60 3c5e_A Acyl-coenzyme A synthet 57.8 67 0.0023 33.9 11.8 97 67-166 204-306 (570)
61 3dzz_A Putative pyridoxal 5'-p 55.8 1.5E+02 0.0052 28.8 17.5 64 107-173 106-176 (391)
62 3ri6_A O-acetylhomoserine sulf 53.3 70 0.0024 32.4 10.6 71 107-179 118-189 (430)
63 1ry2_A Acetyl-coenzyme A synth 52.8 47 0.0016 35.9 9.8 98 238-343 95-195 (663)
64 4gr5_A Non-ribosomal peptide s 50.4 93 0.0032 32.7 11.5 97 67-167 212-313 (570)
65 3nyq_A Malonyl-COA ligase; A/B 50.0 1.3E+02 0.0046 30.8 12.5 95 67-166 153-252 (505)
66 3ni2_A 4-coumarate:COA ligase; 49.5 49 0.0017 34.6 9.0 99 238-348 35-135 (536)
67 1pg4_A Acetyl-COA synthetase; 49.4 53 0.0018 35.4 9.4 96 239-342 90-187 (652)
68 3tbh_A O-acetyl serine sulfhyd 49.0 65 0.0022 31.3 9.2 65 102-166 62-127 (334)
69 3etc_A AMP-binding protein; ad 48.4 63 0.0022 34.2 9.7 96 238-342 69-166 (580)
70 1amu_A GRSA, gramicidin synthe 48.0 72 0.0024 33.6 10.1 97 67-166 180-282 (563)
71 2zzt_A Putative uncharacterize 47.5 92 0.0032 24.2 8.2 60 513-572 12-73 (107)
72 2cvi_A 75AA long hypothetical 47.4 38 0.0013 25.0 5.6 47 513-572 15-61 (83)
73 1eg5_A Aminotransferase; PLP-d 47.3 1E+02 0.0034 30.0 10.6 71 107-178 86-160 (384)
74 2e7j_A SEP-tRNA:Cys-tRNA synth 46.5 1.5E+02 0.005 28.6 11.7 67 107-176 90-166 (371)
75 4gs5_A Acyl-COA synthetase (AM 46.2 76 0.0026 31.0 9.4 100 56-165 28-131 (358)
76 4dg8_A PA1221; ANL superfamily 46.1 1.8E+02 0.0062 30.9 13.0 97 67-167 162-263 (620)
77 3a2b_A Serine palmitoyltransfe 46.0 1.8E+02 0.0061 28.5 12.3 69 107-179 124-195 (398)
78 3ezx_A MMCP 1, monomethylamine 42.9 1.8E+02 0.006 26.1 10.4 89 284-380 94-193 (215)
79 3isl_A Purine catabolism prote 42.6 1.3E+02 0.0044 29.7 10.7 72 107-179 83-158 (416)
80 3ndn_A O-succinylhomoserine su 42.0 1.4E+02 0.0049 29.7 10.8 75 102-179 113-188 (414)
81 3t18_A Aminotransferase class 41.7 2.4E+02 0.0081 27.7 12.5 75 107-185 122-206 (413)
82 2v7b_A Benzoate-coenzyme A lig 41.6 83 0.0029 32.6 9.3 85 259-348 48-134 (529)
83 3t5a_A Long-chain-fatty-acid-- 41.5 1.8E+02 0.0061 29.4 11.8 109 238-351 37-149 (480)
84 2z9v_A Aspartate aminotransfer 39.9 1.2E+02 0.004 29.7 9.8 71 107-178 80-155 (392)
85 1elu_A L-cysteine/L-cystine C- 39.7 1E+02 0.0035 30.0 9.3 75 103-178 94-175 (390)
86 2zbc_A 83AA long hypothetical 39.4 58 0.002 23.7 5.6 47 513-572 15-61 (83)
87 1t3i_A Probable cysteine desul 39.1 1.1E+02 0.0039 30.1 9.6 71 107-178 115-190 (420)
88 1e5e_A MGL, methionine gamma-l 39.0 1.2E+02 0.0041 30.1 9.7 71 107-179 98-169 (404)
89 3kax_A Aminotransferase, class 38.8 1.8E+02 0.006 28.2 10.9 65 107-175 103-174 (383)
90 2bkw_A Alanine-glyoxylate amin 38.8 2E+02 0.0067 27.8 11.2 71 108-179 84-159 (385)
91 3euc_A Histidinol-phosphate am 38.8 1.6E+02 0.0056 28.3 10.5 77 107-187 106-186 (367)
92 3vc3_A Beta-cyanoalnine syntha 38.6 1.2E+02 0.0039 29.6 9.1 63 103-165 78-141 (344)
93 3rq1_A Aminotransferase class 38.5 2.8E+02 0.0096 27.2 12.5 75 107-185 123-207 (418)
94 3l8a_A METC, putative aminotra 38.4 3E+02 0.01 27.1 14.8 64 107-173 140-210 (421)
95 4hvk_A Probable cysteine desul 37.6 78 0.0027 30.7 8.0 69 108-177 86-158 (382)
96 4dq6_A Putative pyridoxal phos 37.6 1.4E+02 0.0047 29.1 9.8 62 107-173 111-180 (391)
97 2cb1_A O-acetyl homoserine sul 36.9 1.2E+02 0.0041 30.2 9.3 71 107-180 92-163 (412)
98 3ju7_A Putative PLP-dependent 36.7 76 0.0026 31.3 7.6 62 100-164 68-136 (377)
99 1zsy_A Mitochondrial 2-enoyl t 36.7 1E+02 0.0035 30.0 8.5 78 85-163 139-222 (357)
100 3cai_A Possible aminotransfera 36.5 1E+02 0.0035 30.3 8.7 74 106-180 109-188 (406)
101 3f9t_A TDC, L-tyrosine decarbo 36.5 2.8E+02 0.0097 26.7 12.1 71 106-179 119-193 (397)
102 4eb5_A Probable cysteine desul 36.2 70 0.0024 31.2 7.3 69 108-177 86-158 (382)
103 2ch1_A 3-hydroxykynurenine tra 35.6 1.5E+02 0.0052 28.9 9.8 72 107-179 90-165 (396)
104 3kgw_A Alanine-glyoxylate amin 35.0 1.7E+02 0.0058 28.4 10.0 72 107-179 95-170 (393)
105 3l8c_A D-alanine--poly(phospho 34.5 2.1E+02 0.0071 29.4 11.0 99 67-166 143-247 (521)
106 1o69_A Aminotransferase; struc 33.6 2.1E+02 0.007 28.1 10.4 62 101-165 63-130 (394)
107 2dr1_A PH1308 protein, 386AA l 32.7 2.5E+02 0.0087 27.0 10.9 72 107-179 92-168 (386)
108 3zrp_A Serine-pyruvate aminotr 32.6 1.4E+02 0.0049 28.8 9.0 71 107-178 74-148 (384)
109 1kmj_A Selenocysteine lyase; p 32.5 1.2E+02 0.0042 29.6 8.5 71 107-178 110-185 (406)
110 4fuq_A Malonyl COA synthetase; 32.2 1.3E+02 0.0044 30.9 8.9 80 260-344 29-110 (503)
111 4h1h_A LMO1638 protein; MCCF-l 32.1 1.1E+02 0.0038 29.5 7.7 63 106-168 8-89 (327)
112 3op7_A Aminotransferase class 32.1 1.7E+02 0.006 28.2 9.5 65 107-175 102-172 (375)
113 3cog_A Cystathionine gamma-lya 32.0 2E+02 0.0067 28.5 9.9 70 107-178 102-172 (403)
114 1c7n_A Cystalysin; transferase 31.8 2.1E+02 0.0073 27.9 10.2 66 107-175 110-182 (399)
115 3tqh_A Quinone oxidoreductase; 31.7 1.1E+02 0.0039 29.1 7.8 75 85-164 125-203 (321)
116 2huf_A Alanine glyoxylate amin 31.7 1.9E+02 0.0066 28.0 9.8 72 107-179 91-166 (393)
117 3nnk_A Ureidoglycine-glyoxylat 31.6 1.9E+02 0.0065 28.3 9.8 72 107-179 85-160 (411)
118 3aow_A Putative uncharacterize 31.6 4E+02 0.014 26.6 14.4 54 107-163 161-222 (448)
119 1vjo_A Alanine--glyoxylate ami 31.5 2E+02 0.0067 28.0 9.8 72 107-179 106-181 (393)
120 1d2f_A MALY protein; aminotran 31.2 2.9E+02 0.01 26.7 11.1 66 107-175 108-180 (390)
121 3kki_A CAI-1 autoinducer synth 31.1 3.3E+02 0.011 26.6 11.5 69 107-179 140-208 (409)
122 2z61_A Probable aspartate amin 30.4 2.2E+02 0.0075 27.4 9.9 65 107-177 110-174 (370)
123 2q3b_A Cysteine synthase A; py 30.4 2.2E+02 0.0076 27.0 9.6 63 102-165 58-121 (313)
124 2rfv_A Methionine gamma-lyase; 30.1 2.6E+02 0.0087 27.4 10.4 71 107-179 100-171 (398)
125 3byp_A CZRB protein; membrane 29.9 1.7E+02 0.0058 21.8 7.0 61 512-572 11-75 (94)
126 3cq5_A Histidinol-phosphate am 29.8 3.1E+02 0.011 26.3 10.9 67 107-176 113-183 (369)
127 2ctz_A O-acetyl-L-homoserine s 29.6 2.3E+02 0.0078 28.2 10.0 71 107-179 94-166 (421)
128 1yj7_A ESCJ; mixed alpha/beta, 29.5 1.8E+02 0.0062 25.0 7.7 70 513-584 92-163 (171)
129 1cs1_A CGS, protein (cystathio 29.4 3.5E+02 0.012 26.2 11.2 71 107-179 88-159 (386)
130 3i16_A Aluminum resistance pro 29.3 1.3E+02 0.0046 30.2 8.0 59 107-165 112-184 (427)
131 3hvy_A Cystathionine beta-lyas 29.1 1.6E+02 0.0053 29.7 8.5 63 101-165 108-184 (427)
132 3lvm_A Cysteine desulfurase; s 29.1 2.6E+02 0.009 27.4 10.4 70 108-178 111-184 (423)
133 4eez_A Alcohol dehydrogenase 1 29.1 1.6E+02 0.0056 28.3 8.5 78 85-165 136-216 (348)
134 3e2y_A Kynurenine-oxoglutarate 28.3 4.2E+02 0.014 25.7 12.8 63 107-173 106-183 (410)
135 3fdb_A Beta C-S lyase, putativ 28.1 3.2E+02 0.011 26.2 10.7 65 107-175 102-168 (377)
136 1pff_A Methionine gamma-lyase; 28.0 3E+02 0.01 25.9 10.3 70 107-178 34-104 (331)
137 2djw_A Probable transcriptiona 28.0 66 0.0022 24.1 4.2 34 513-551 15-48 (92)
138 2zyj_A Alpha-aminodipate amino 27.7 3.8E+02 0.013 26.0 11.2 53 107-162 112-167 (397)
139 3nra_A Aspartate aminotransfer 27.6 4.1E+02 0.014 25.7 11.5 65 107-175 123-197 (407)
140 3tsy_A Fusion protein 4-coumar 27.1 1.5E+02 0.0052 33.6 8.9 96 238-345 74-171 (979)
141 4aec_A Cysteine synthase, mito 27.0 2.3E+02 0.0079 28.5 9.2 63 103-165 166-229 (430)
142 3ite_A SIDN siderophore synthe 26.8 1.9E+02 0.0065 30.1 9.1 99 68-166 174-281 (562)
143 2v03_A Cysteine synthase B; py 26.8 3E+02 0.01 25.9 9.8 62 103-165 53-115 (303)
144 3vax_A Putative uncharacterize 26.7 1.2E+02 0.0041 29.7 7.2 69 108-177 106-179 (400)
145 1z7w_A Cysteine synthase; tran 26.7 2.5E+02 0.0085 26.8 9.2 62 103-165 58-121 (322)
146 3tla_A MCCF; serine protease, 26.6 1.4E+02 0.0048 29.4 7.4 64 105-168 38-120 (371)
147 1b5p_A Protein (aspartate amin 26.4 4.4E+02 0.015 25.4 14.1 56 107-166 112-173 (385)
148 3sr3_A Microcin immunity prote 26.2 2.1E+02 0.0071 27.7 8.4 63 106-168 9-90 (336)
149 1fg7_A Histidinol phosphate am 26.0 3.7E+02 0.013 25.7 10.6 75 107-187 96-175 (356)
150 2pqm_A Cysteine synthase; OASS 26.0 2.3E+02 0.0078 27.4 8.8 62 103-165 70-132 (343)
151 2egu_A Cysteine synthase; O-ac 25.9 2.5E+02 0.0086 26.5 9.0 64 102-166 56-120 (308)
152 1qgn_A Protein (cystathionine 25.8 3.2E+02 0.011 27.5 10.3 72 107-179 150-222 (445)
153 2r2n_A Kynurenine/alpha-aminoa 25.7 4.9E+02 0.017 25.6 15.6 55 107-164 129-197 (425)
154 3fvs_A Kynurenine--oxoglutarat 25.6 4.8E+02 0.016 25.4 13.2 64 107-174 112-191 (422)
155 4e5s_A MCCFLIKE protein (BA_56 25.1 1.8E+02 0.0061 28.1 7.7 16 106-121 8-23 (331)
156 1j32_A Aspartate aminotransfer 24.9 3.8E+02 0.013 25.8 10.6 56 107-166 111-172 (388)
157 1mdo_A ARNB aminotransferase; 24.6 1.5E+02 0.0051 28.9 7.4 61 101-165 70-135 (393)
158 2w8t_A SPT, serine palmitoyltr 24.4 4.9E+02 0.017 25.6 11.4 68 107-178 145-215 (427)
159 2ayi_A Aminopeptidase T; metal 23.8 1.3E+02 0.0043 30.2 6.5 50 92-141 5-58 (408)
160 3ly1_A Putative histidinol-pho 23.8 4.6E+02 0.016 24.7 11.8 68 107-177 89-161 (354)
161 3ele_A Amino transferase; RER0 23.7 3.4E+02 0.012 26.3 10.0 65 107-175 120-190 (398)
162 1u08_A Hypothetical aminotrans 23.6 5E+02 0.017 24.9 11.5 76 107-187 112-192 (386)
163 1y7l_A O-acetylserine sulfhydr 23.4 2.5E+02 0.0085 26.7 8.5 63 102-165 53-116 (316)
164 1ve1_A O-acetylserine sulfhydr 23.3 4E+02 0.014 25.0 9.9 63 103-166 52-117 (304)
165 3jzl_A Putative cystathionine 23.1 1.5E+02 0.0053 29.5 7.1 58 107-165 98-167 (409)
166 3acz_A Methionine gamma-lyase; 22.7 3.8E+02 0.013 26.1 10.0 71 107-179 95-166 (389)
167 1h2b_A Alcohol dehydrogenase; 22.7 2.1E+02 0.0074 27.7 8.0 61 100-163 175-237 (359)
168 3s2e_A Zinc-containing alcohol 22.5 1.9E+02 0.0067 27.7 7.6 77 85-165 139-218 (340)
169 2jgn_A DBX, DDX3, ATP-dependen 22.5 2.6E+02 0.009 23.9 7.8 71 94-166 32-105 (185)
170 3ijw_A Aminoglycoside N3-acety 22.3 54 0.0019 30.6 3.2 25 96-120 18-42 (268)
171 3gqw_A Fatty acid AMP ligase; 22.3 2.9E+02 0.0098 28.7 9.5 90 258-349 48-143 (576)
172 3pc3_A CG1753, isoform A; CBS, 22.0 3E+02 0.01 28.4 9.4 63 103-166 105-168 (527)
173 2y9j_Y Lipoprotein PRGK, prote 21.6 3.8E+02 0.013 22.9 8.6 66 513-580 90-163 (170)
174 3two_A Mannitol dehydrogenase; 21.6 2.7E+02 0.0093 26.7 8.5 74 85-162 149-225 (348)
175 3b8x_A WBDK, pyridoxamine 5-ph 21.6 2.7E+02 0.0091 27.1 8.6 56 106-165 76-136 (390)
176 2c81_A Glutamine-2-deoxy-scyll 21.5 2.4E+02 0.0083 27.8 8.4 61 101-165 73-138 (418)
177 2jtq_A Phage shock protein E; 21.5 1.8E+02 0.0062 21.0 5.6 45 84-135 22-66 (85)
178 3h90_A Ferrous-iron efflux pum 21.3 2.2E+02 0.0074 26.6 7.4 62 512-573 207-270 (283)
179 3qhx_A Cystathionine gamma-syn 21.2 3.3E+02 0.011 26.6 9.2 71 107-179 102-173 (392)
180 1vp4_A Aminotransferase, putat 21.0 5.9E+02 0.02 24.9 13.4 53 107-162 130-192 (425)
181 3n0l_A Serine hydroxymethyltra 20.9 3.9E+02 0.013 26.0 9.8 70 107-178 108-183 (417)
182 1fc4_A 2-amino-3-ketobutyrate 20.9 3.4E+02 0.012 26.4 9.3 67 107-177 126-197 (401)
183 1zjc_A Aminopeptidase AMPS; me 20.9 1.2E+02 0.0042 30.4 5.7 51 91-141 7-61 (418)
184 3g0t_A Putative aminotransfera 20.7 2.1E+02 0.0073 28.3 7.8 66 107-175 128-200 (437)
185 2nyg_A YOKD protein; PFAM02522 20.7 61 0.0021 30.4 3.2 24 97-120 17-40 (273)
186 3sma_A FRBF; N-acetyl transfer 20.6 62 0.0021 30.5 3.2 33 81-120 17-49 (286)
187 2bwn_A 5-aminolevulinate synth 20.6 4.3E+02 0.015 25.6 10.0 68 108-179 130-200 (401)
188 3krt_A Crotonyl COA reductase; 20.3 2.1E+02 0.0072 28.9 7.6 77 85-164 198-280 (456)
No 1
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=4.8e-106 Score=895.75 Aligned_cols=618 Identities=49% Similarity=0.890 Sum_probs=529.7
Q ss_pred ChHhhhhChHHHHHHHHhc-cccccccccccccccccccCCCcc--ccccCCCchhHhhhhhhhhhccCCCCeeEEEEEc
Q 006776 1 MYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVRKGNVK--IEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEA 77 (631)
Q Consensus 1 ~~~~s~~~~~~fw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~wf~~~~~n~~~~~l~~~~~~~~~~~~A~~~~~ 77 (631)
||+||++||+.||.++|+. +.|+++|++ |++.+.+. .++++ .+||+||++|+++++|++++. .+|+++|+++.+
T Consensus 29 ~~~~s~~~~~~fw~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~wf~~~~~n~~~~~l~~~a~-~~pd~~Al~~~~ 105 (663)
T 1ry2_A 29 LHKESIEDPAKFFGSKATQFLNWSKPFDK-VFIPDPKT-GRPSFQNNAWFLNGQLNACYNCVDRHAL-KTPNKKAIIFEG 105 (663)
T ss_dssp HHHHHHHCHHHHHHHHHHHHCCEEECCSC-SBCBCSSS-CSBCSTTCCBSTTCEECHHHHHTHHHHT-TCTTSEEEEEEC
T ss_pred HHHHHhcCHHHHHHHHHhhcCeeecCCce-eecCcccc-ccCCCCCCCcCCCCCccHHHHHHHHHhc-cCCCceEEEEEc
Confidence 5899999999999999998 999999999 98544100 10112 699999999999999999998 799999999976
Q ss_pred CCCCceeeecHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhc
Q 006776 78 NDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDC 156 (631)
Q Consensus 78 ~~~~~~~~~Ty~eL~~~v~~~A~~L~-~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~ 156 (631)
++.+..+++||+||.++|+++|++|+ ++|+++||+|+|++||++++++++|||+++|++++|++++++.+++.++|+++
T Consensus 106 ~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~ 185 (663)
T 1ry2_A 106 DEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDG 185 (663)
T ss_dssp SSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhc
Confidence 53345789999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcCCCCCccchhhhcccCCCCCCcee
Q 006776 157 KPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW 236 (631)
Q Consensus 157 ~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (631)
+|+++|+++...++++.++++..+++++..+ +.++++++++..... ...+...++.+|++++.......++..
T Consensus 186 ~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vi~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (663)
T 1ry2_A 186 DSKVVITTDESNRGGKVIETKRIVDDALRET----PGVRHVLVYRKTNNP---SVAFHAPRDLDWATEKKKYKTYYPCTP 258 (663)
T ss_dssp TCSEEEEESBCCBTTBCCBHHHHHHHHTTSC----TTCCEEEEECSSCCS---SCCCCSSSEEEHHHHHTTSCSCCCCCC
T ss_pred CCeEEEEccccccCCcccchHHHHHHHHHhC----CCCceEEEEecCCCC---ccccCCCccccHHHHHhhcCCCCCccc
Confidence 9999999999888888888888887776554 567788877643210 112223445677777654443344455
Q ss_pred cCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEEecC
Q 006776 237 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEG 316 (631)
Q Consensus 237 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~~ 316 (631)
..++++++|+|||||||.||||+++|++++.+........+++.++|++++.+|++|++|+.+.++++|+.|++++++++
T Consensus 259 ~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~ 338 (663)
T 1ry2_A 259 VDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEG 338 (663)
T ss_dssp EETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECS
T ss_pred cCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECC
Confidence 67899999999999999999999999998777766666778999999999999999999987888999999999999998
Q ss_pred CCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccCCCCHhHHHHHHHHhCCCCcceecc
Q 006776 317 APTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDT 396 (631)
Q Consensus 317 ~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~ 396 (631)
.+..+++..+++.|+++++|+++++|++++.|++...+.....++++||.+++|||++++++++++.+.+|..++++++.
T Consensus 339 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~ 418 (663)
T 1ry2_A 339 TPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDT 418 (663)
T ss_dssp CTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEEC
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEe
Confidence 77777999999999999999999999999999987654445668999999999999999999999999998556899999
Q ss_pred cccccccceecccCC-CCCCCCCCCcCCCcCCCceEEeCC-CCcccCC-CcceeEEEecCCCcccccccCCchhhhhhcc
Q 006776 397 WWQTETGGFMITPLP-GAWPQKPGSATFPFFGVQPVIVDE-KGVEIEG-ECSGYLCIKSSWPGAFRTLYGDHERYETTYF 473 (631)
Q Consensus 397 yg~tE~g~~~~~~~~-~~~~~~~~~~G~p~~~~~~~i~d~-~g~~~~~-g~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~ 473 (631)
||+||+++.++...+ +..+.+++++|+|++|++++|+|+ +|++++. |+.|||+|++++|+++.|||++++++...|+
T Consensus 419 YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~ 498 (663)
T 1ry2_A 419 YWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYL 498 (663)
T ss_dssp BCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHT
T ss_pred ECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhh
Confidence 999999976665544 334567899999999999999999 9999988 8999999999999999999999999999998
Q ss_pred ccCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcCcccceEEEEeeecCCCCeeEEEEEEeCCCC
Q 006776 474 KPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV 553 (631)
Q Consensus 474 ~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~ 553 (631)
..++|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++..|+.+++||+++++.
T Consensus 499 ~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~ 578 (663)
T 1ry2_A 499 NPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKS 578 (663)
T ss_dssp SSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC---
T ss_pred cCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCC
Confidence 87899999999999999999999999999999999999999999999999999999999999988899999999998765
Q ss_pred C---C-cH---HHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHHHHhcCcCCCCCCCCCCChHHHHHHH
Q 006776 554 P---Y-SE---ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLI 626 (631)
Q Consensus 554 ~---~-~~---~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (631)
. . ++ ++.++|+++|+++|++|++|+.|+++++||+|+|||++|+.|++++.++.+++++.++++||+++++|+
T Consensus 579 ~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~l~~p~~~~~~~ 658 (663)
T 1ry2_A 579 SWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLI 658 (663)
T ss_dssp ---------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-------------CCHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCCCCCCCCcccccCHHHHHHHH
Confidence 3 2 22 467899999999999999999999999999999999999999999998766788999999999999997
Q ss_pred hh
Q 006776 627 AL 628 (631)
Q Consensus 627 ~~ 628 (631)
+.
T Consensus 659 ~~ 660 (663)
T 1ry2_A 659 DS 660 (663)
T ss_dssp HT
T ss_pred HH
Confidence 63
No 2
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=3.6e-105 Score=888.56 Aligned_cols=619 Identities=55% Similarity=1.013 Sum_probs=537.1
Q ss_pred ChHhhhhChHHHHHHHHhccccccccccccccccccccCCCccccccCCCchhHhhhhhhhhhccCCCCeeEEEEEcCCC
Q 006776 1 MYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDP 80 (631)
Q Consensus 1 ~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~~~~~A~~~~~~~~ 80 (631)
||+||++||+.||.++|+.+.|.++|++ +++.+... ..+.++||+|+++|+++++|++++. .+|+++|+++.+++.
T Consensus 27 l~~~~~~~p~~~w~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~wf~~~~~n~~~~~l~~~a~-~~pd~~Al~~~~~~~ 102 (652)
T 1pg4_A 27 KYKQSINDPDTFWGEQGKILDWITPYQK-VKNTSFAP--GNVSIKWYEDGTLNLAANCLDRHLQ-ENGDRTAIIWEGDDT 102 (652)
T ss_dssp HHHHHHHCHHHHHHHHGGGSCCSBCCSC-CEEEECCT--TCCEEEESTTCEECHHHHHTGGGHH-HHTTSEEEEEECSST
T ss_pred HHHHHhcCHHHHHHHHHhhCceecCCcc-cccCcccc--CCCCCEECCCCChhHHHHHHHHHhc-cCCCceEEEEEcCCC
Confidence 5789999999999999999999999998 87433210 1225799999999999999999998 699999999976533
Q ss_pred CceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceE
Q 006776 81 GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKV 160 (631)
Q Consensus 81 ~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ 160 (631)
+..+++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++|+++++++
T Consensus 103 ~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 182 (652)
T 1pg4_A 103 SQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRL 182 (652)
T ss_dssp TCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSE
T ss_pred CceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcCCCCCccchhhhcccCCCCCCceecCCC
Q 006776 161 VITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAE 240 (631)
Q Consensus 161 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (631)
+|+++...+.++.++++..+++++..+. ...++++++++.... ...+...++.+|++++.......+.....++
T Consensus 183 li~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (652)
T 1pg4_A 183 VITADEGVRAGRSIPLKKNVDDALKNPN--VTSVEHVIVLKRTGS----DIDWQEGRDLWWRDLIEKASPEHQPEAMNAE 256 (652)
T ss_dssp EEEESEEEETTEEEESHHHHHHHHTSTT--CCSCCEEEEECSSCC----CCCCCBTTEEEHHHHHTTSCSCCCCCCEETT
T ss_pred EEEcCccccCCcccchHHHHHHHHhcCC--cCCCCEEEEEeCCCC----cccccCCCceeHHHHHhhcCCCCCccccCCC
Confidence 9999988888888888888877665430 024667777764321 1122233456677776544333344456789
Q ss_pred CCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEEecCCCCC
Q 006776 241 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTY 320 (631)
Q Consensus 241 ~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~ 320 (631)
++++|+|||||||.||||+++|++++.+........++++++|++++.+|++|++|+.+.++++|+.|++++++++.+..
T Consensus 257 d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~ 336 (652)
T 1pg4_A 257 DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 336 (652)
T ss_dssp SEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTS
T ss_pred CCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCC
Confidence 99999999999999999999999987776666666789999999999999999999878889999999999999987766
Q ss_pred CChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccCCCCHhHHHHHHHHhCCCCcceecccccc
Q 006776 321 PDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQT 400 (631)
Q Consensus 321 ~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~yg~t 400 (631)
+++..+++.|+++++|+++++|++++.|++...+.....++++||.+++|||++++++++++++.+|..++++++.||+|
T Consensus 337 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~T 416 (652)
T 1pg4_A 337 PTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416 (652)
T ss_dssp SSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCG
T ss_pred CCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCc
Confidence 79999999999999999999999999999875433445688999999999999999999999999986568999999999
Q ss_pred cccceecccCCCCCCCCCCCcCCCcCCCceEEeCCCCcccCCCcceeEEEecCCCcccccccCCchhhhhhccccCCCeE
Q 006776 401 ETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYY 480 (631)
Q Consensus 401 E~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~ 480 (631)
|++++++...++..+.+++++|+|++|++++|+|++|++++.|+.|||+|+|+||+++.|||++++++...|+..++|||
T Consensus 417 E~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y 496 (652)
T 1pg4_A 417 ETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY 496 (652)
T ss_dssp GGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSE
T ss_pred ccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEE
Confidence 99987665554434567899999999999999999999999999999999999999999999999999999887778999
Q ss_pred ecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcCcccceEEEEeeecCCCCeeEEEEEEeCCCCCCcHHHH
Q 006776 481 FTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELR 560 (631)
Q Consensus 481 ~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 560 (631)
+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++..|+.+++||+++++...++++.
T Consensus 497 ~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~ 576 (652)
T 1pg4_A 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELY 576 (652)
T ss_dssp EEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHH
T ss_pred ECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999989999999999998876667778
Q ss_pred HHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHHHHhcCcCCCCCCCCCCChHHHHHHHhhh
Q 006776 561 KSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIALA 629 (631)
Q Consensus 561 ~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (631)
++|+++|+++|++|++|+.|+++++||+|+|||++|+.|++++.++++++++.++++||+++++|++..
T Consensus 577 ~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~ 645 (652)
T 1pg4_A 577 AEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645 (652)
T ss_dssp HHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC----------CCTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998766788999999999999997643
No 3
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=4.2e-83 Score=701.52 Aligned_cols=524 Identities=28% Similarity=0.392 Sum_probs=429.8
Q ss_pred cccCCCchhHhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHH
Q 006776 45 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 124 (631)
Q Consensus 45 ~wf~~~~~n~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~ 124 (631)
+|.....+|+++++|+++++ .+|+++|+++.+++ +..+++||+||.++++++|++|+++|+++||+|+++++|+++++
T Consensus 48 ~~~~~~~~n~~~~~l~~~a~-~~pd~~Al~~~~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~ 125 (580)
T 3etc_A 48 KILVPENFNFAYDVVDVYAR-DSPEKLAMIWCDDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125 (580)
T ss_dssp CBCCCSSCCHHHHTHHHHHH-HCTTCEEEEEEESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH
T ss_pred CCCCcccchHHHHHHHHHHh-hCCCCEEEEEEcCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence 67777889999999999998 79999999987654 55789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCc-cEEEEEecC
Q 006776 125 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV-DVCLTYENQ 203 (631)
Q Consensus 125 v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vi~~~~~ 203 (631)
+++|||+++|++++|+++.++.+++.+++++++++++|++.... ....+.++...+ +.+ ..++.+...
T Consensus 126 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~~~~~ 194 (580)
T 3etc_A 126 YCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD-------VPEQVDEAHAEC----GDIPLKKAKVGGD 194 (580)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT-------HHHHHHHHHHHH----CSCCCEEEEESSS
T ss_pred HHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh-------HHHHHHHHhhhC----CCcceEEEEeCCc
Confidence 99999999999999999999999999999999999999987532 224445555554 444 445544321
Q ss_pred CccccccCcCCCCCccchhhhcccCCCCCC----ceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCC
Q 006776 204 SAMTRENTKWQDGRDIWWQDVVPKYPTKCE----VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY 279 (631)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~ 279 (631)
. ......+.+.+........ .....++|+++|+|||||||.||+|+++|.+++... ......+++
T Consensus 195 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~-~~~~~~~~~ 263 (580)
T 3etc_A 195 V----------LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHI-LTAKYWQNV 263 (580)
T ss_dssp C----------CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHH-HHHHTTSCC
T ss_pred c----------ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHH-HHHHHhhCC
Confidence 1 0112334444433222111 124578999999999999999999999999854433 334445788
Q ss_pred CCCcEEEEecccceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCcccccc
Q 006776 280 KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 359 (631)
Q Consensus 280 ~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~ 359 (631)
.+++++++.++++|..+.+..++.++..|+++++++.. .+++..+++.|+++++|+++++|++++.|.+.. ....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~ 338 (580)
T 3etc_A 264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYD--RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED---LSHY 338 (580)
T ss_dssp CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECS--SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC---C---
T ss_pred CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCC--CCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc---cccC
Confidence 99999999999999988766788999999999998532 258999999999999999999999999999863 3456
Q ss_pred CCCceeEEEEccCCCCHhHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCCCcCCCceEEeCCCCcc
Q 006776 360 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVE 439 (631)
Q Consensus 360 ~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~ 439 (631)
++++||.+++|||++++++.+++.+.+| +++++.||+||++..++.... ...+++++|+|+|+++++|+|++|++
T Consensus 339 ~l~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~v~ivd~~g~~ 413 (580)
T 3etc_A 339 NFSTLKYAVVAGEPLNPEVFNRFLEFTG---IKLMEGFGQTETVVTIATFPW--MEPKPGSIGKPTPGYKIELMDRDGRL 413 (580)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHHS---CCCEEEECCTTSSCCEECCTT--SCCCTTCCBEECTTCEEEEECTTSCB
T ss_pred CCccceEEEEccCCCCHHHHHHHHHHhC---CeEecccccccccceeecCCC--CCCCCCccccCCCCCEEEEECCCCCC
Confidence 7899999999999999999999999987 789999999999876553322 23578899999999999999999999
Q ss_pred cCCCcceeEEEecC---CCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHH
Q 006776 440 IEGECSGYLCIKSS---WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEV 516 (631)
Q Consensus 440 ~~~g~~Gel~v~~~---~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eI 516 (631)
++.|+.|||+|+++ .|+++.|||++++.+...|. +|||+|||+|++|+||+++|+||+||+||++|++|+|.||
T Consensus 414 ~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~---~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eI 490 (580)
T 3etc_A 414 CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH---DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEV 490 (580)
T ss_dssp CCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE---TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHH
T ss_pred CCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC---CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHH
Confidence 99999999999963 27899999999999988774 7999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccceEEEEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhH
Q 006776 517 ESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 596 (631)
Q Consensus 517 E~~l~~~~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r 596 (631)
|++|.+||+|.+|+|++++++..++.++++|++.++...++++.++|+++|++.|++|++|+.|+++++||+|++|||+|
T Consensus 491 E~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R 570 (580)
T 3etc_A 491 ESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRR 570 (580)
T ss_dssp HHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC-----------
T ss_pred HHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcH
Confidence 99999999999999999999999999999999998887777888999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 006776 597 RILRKIASR 605 (631)
Q Consensus 597 ~~l~~~~~~ 605 (631)
+.||+++.+
T Consensus 571 ~~Lr~~~~~ 579 (580)
T 3etc_A 571 VEIRDKDQS 579 (580)
T ss_dssp ---------
T ss_pred HHHHhHhhc
Confidence 999998764
No 4
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.7e-80 Score=679.98 Aligned_cols=522 Identities=26% Similarity=0.360 Sum_probs=442.9
Q ss_pred cccccCCCchhHhhhhhhhhhccC-----CCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHC-CCCCCCEEEEE
Q 006776 43 KIEWFKGGITNICYNCLDRNIEAG-----LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIY 116 (631)
Q Consensus 43 ~~~wf~~~~~n~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~-Gv~~gd~V~i~ 116 (631)
+..|+....+|++.++|++++. . +|+++|+++.+.+ +..+++||+||.++++++|++|++. |+++||+|+++
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~a~-~~~a~~~p~~~al~~~~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~ 105 (570)
T 3c5e_A 28 WGHQEVPAKFNFASDVLDHWAD-MEKAGKRPPSPALWWVNGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVV 105 (570)
T ss_dssp CCBCCCCSBCCHHHHTHHHHHH-HHHTTSSCCCEEEEEECSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEE
T ss_pred cccccCCccccHHHHHHHHHHh-hccccCCCCceEEEEEcCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEE
Confidence 3579999999999999999987 6 9999999986432 3358899999999999999999998 99999999999
Q ss_pred ccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccE
Q 006776 117 LPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDV 196 (631)
Q Consensus 117 ~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (631)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++... ..+..+...+ +.++.
T Consensus 106 ~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~ 172 (570)
T 3c5e_A 106 LPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI---------QEVDTVASEC----PSLRI 172 (570)
T ss_dssp CCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH---------HHHHHHGGGC----TTCCE
T ss_pred cCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH---------HHHHHHhhcC----CceeE
Confidence 9999999999999999999999999999999999999999999999987532 2333332233 55666
Q ss_pred EEEEecCCccccccCcCCCCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHH-HHHHHHH
Q 006776 197 CLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH-TATTFKY 275 (631)
Q Consensus 197 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~-~~~~~~~ 275 (631)
++++..... .....+.+++...+...+.....++++++|+|||||||.||||+++|+ .+.. ..... .
T Consensus 173 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~ 240 (570)
T 3c5e_A 173 KLLVSEKSC----------DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-G 240 (570)
T ss_dssp EEEESSSCC----------TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-T
T ss_pred EEEecccCc----------cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-h
Confidence 665543110 112234444433222222234568999999999999999999999999 4542 33333 4
Q ss_pred hcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCcc
Q 006776 276 AFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 355 (631)
Q Consensus 276 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~ 355 (631)
.+++.++|++++.+|++|..+....++.++..|+++++.... .+++..+++.|+++++|+++++|++++.|.+..
T Consensus 241 ~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--- 315 (570)
T 3c5e_A 241 WTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLP--KFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD--- 315 (570)
T ss_dssp TTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCS--SCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---
T ss_pred hcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCC--CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---
Confidence 678899999999999999998766788999999999998642 258999999999999999999999999999863
Q ss_pred ccccCCCceeEEEEccCCCCHhHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCCCcCCCceEEeCC
Q 006776 356 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE 435 (631)
Q Consensus 356 ~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 435 (631)
....++++||.+++|||++++++.+++.+.++ +++++.||+||++..++.... ....++++|+|+++++++|+|+
T Consensus 316 ~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~v~i~d~ 390 (570)
T 3c5e_A 316 LSSYKFPHLQNCVTVGESLLPETLENWRAQTG---LDIRESYGQTETGLTCMVSKT--MKIKPGYMGTAASCYDVQIIDD 390 (570)
T ss_dssp TTTCCCTTCCEEEEESSCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEECCTT--SCCCTTCCCEECTTCCEEEECT
T ss_pred ccccccccceEEEEcCCcCCHHHHHHHHHHhC---CchhhccchhhcccceecCcc--cccCCCcccccCCCceEEEECC
Confidence 23456899999999999999999999999887 789999999999865543322 2356789999999999999999
Q ss_pred CCcccCCCcceeEEEe-----cCCCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeecCCeEecCcee
Q 006776 436 KGVEIEGECSGYLCIK-----SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHR 510 (631)
Q Consensus 436 ~g~~~~~g~~Gel~v~-----~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~ 510 (631)
+|++++.|+.|||+|+ | |+++.|||++++.+...|. +|||+|||+|++|+||+++|+||+||+||++|++
T Consensus 391 ~g~~~~~G~~GEl~v~~~~~~g--~~v~~GY~~~~~~t~~~f~---~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~ 465 (570)
T 3c5e_A 391 KGNVLPPGTEGDIGIRVKPIRP--IGIFSGYVDNPDKTAANIR---GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYR 465 (570)
T ss_dssp TSCBCCTTCCEEEEEECSSBCC--TTCCCEETTCHHHHHHTEE---TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEE
T ss_pred CCCCCCCCCCCeeEEeccCCCC--chhhccccCChhHhhhhhc---CCccccceeEEEcCCceEEEEecCCCEEEECCEE
Confidence 9999999999999999 8 9999999999998887764 6899999999999999999999999999999999
Q ss_pred echHHHHHHHhcCcccceEEEEeeecCCCCeeEEEEEEeCCCC--CCcHHHHHHHHHHHHhhcCCCccCceEEECCCCCC
Q 006776 511 IGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV--PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 588 (631)
Q Consensus 511 i~~~eIE~~l~~~~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~ 588 (631)
|+|.|||++|.+||+|.+++|++.+++..++.++++|++.++. ...+.+.++|+++|+++|+.|++|+.|+++++||+
T Consensus 466 V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~ 545 (570)
T 3c5e_A 466 IGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPK 545 (570)
T ss_dssp ECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCB
T ss_pred ECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCC
Confidence 9999999999999999999999999998899999999987654 23355678999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHhcC
Q 006776 589 TRSGKIMRRILRKIASRQ 606 (631)
Q Consensus 589 t~sGKi~r~~l~~~~~~~ 606 (631)
|++||++|++|++.+...
T Consensus 546 t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 546 TVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp CTTCCBCHHHHHHHHTC-
T ss_pred CCCcCCcHHHHHHHHHhh
Confidence 999999999999988654
No 5
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.9e-80 Score=676.29 Aligned_cols=506 Identities=23% Similarity=0.343 Sum_probs=427.9
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
++.++|.+++. .+|+++|+++. ...+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 23 ~l~~~l~~~a~-~~p~~~a~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~ 97 (536)
T 3ni2_A 23 PLHSYVLENLS-NHSSKPCLING----ANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHR 97 (536)
T ss_dssp CHHHHHTTTGG-GSTTSEEEEET----TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhh-cCCCceEEEEC----CCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 36678888887 79999999864 22578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcC
Q 006776 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 213 (631)
Q Consensus 134 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 213 (631)
|++++|++|.++.+++.+++++++++++|+++... ..+....... .+ .++.++...
T Consensus 98 Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~---------~~~~~~~~~~-----~~-~~~~~~~~~--------- 153 (536)
T 3ni2_A 98 GAIITAANPFSTPAELAKHAKASRAKLLITQACYY---------EKVKDFARES-----DV-KVMCVDSAP--------- 153 (536)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGT---------HHHHHHHHHH-----TC-EEEESSCCC---------
T ss_pred CCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHH---------HHHHHHHhhc-----Cc-eEEEecCCC---------
Confidence 99999999999999999999999999999986543 2233322221 22 233332211
Q ss_pred CCCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHH---HhcCCCCCcEEEEecc
Q 006776 214 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTAD 290 (631)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~---~~~~~~~~d~~~~~~~ 290 (631)
.....+.++........+.....++++++|+|||||||.||||+++|++++........ ..+++.++|++++.+|
T Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p 231 (536)
T 3ni2_A 154 --DGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLP 231 (536)
T ss_dssp --TTCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSC
T ss_pred --CCccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecC
Confidence 11233444443322222333467899999999999999999999999997665544322 1346788999999999
Q ss_pred cceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEc
Q 006776 291 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 370 (631)
Q Consensus 291 ~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~ 370 (631)
++|.+|....++.++..|+++++.+. +++..+++.++++++|++.++|+++..|.+... ....++++||.+++|
T Consensus 232 ~~h~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~g 305 (536)
T 3ni2_A 232 MFHIYALNSIMLCGLRVGAPILIMPK----FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--LDKHDLSSLRMIKSG 305 (536)
T ss_dssp TTSHHHHHHTHHHHHHHTCCEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC--GGGSCCTTCCEEEEE
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEcCC----CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc--cccCCCccceEEEEC
Confidence 99999987778899999999999764 489999999999999999999999999998754 345678999999999
Q ss_pred cCCCCHhHHHHHHHHhCCCCcceecccccccccceecccC---CCCCCCCCCCcCCCcCCCceEEeC-CCCcccCCCcce
Q 006776 371 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL---PGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSG 446 (631)
Q Consensus 371 Ge~l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~---~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~G 446 (631)
||++++++.+++.+.++ ++++++.||+||++++++... .......++++|.|+++++++|+| ++|++++.|+.|
T Consensus 306 Ge~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G 383 (536)
T 3ni2_A 306 GAPLGKELEDTVRAKFP--QARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPG 383 (536)
T ss_dssp SSCCCHHHHHHHHHHCT--TSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCE
T ss_pred CCCCCHHHHHHHHHHCC--CCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCcc
Confidence 99999999999999996 489999999999997654331 112335778999999999999999 579999999999
Q ss_pred eEEEecCCCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcCccc
Q 006776 447 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQC 526 (631)
Q Consensus 447 el~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V 526 (631)
||+|+| |+++.|||++++.+...+.. +|||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.+||+|
T Consensus 384 El~v~g--~~v~~GY~~~p~~t~~~~~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V 459 (536)
T 3ni2_A 384 EICIRG--DQIMKGYLNDPEATSRTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEI 459 (536)
T ss_dssp EEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTE
T ss_pred EEEEeC--cccchhhcCChhHHHhhccC--CCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCc
Confidence 999999 99999999999998887754 78999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHHHHhc
Q 006776 527 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 605 (631)
Q Consensus 527 ~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~~~ 605 (631)
.+++|++++++..++.++++|+..++...+ .++|+++|+++|+.|++|+.++++++||+|++||++|++|++++.+
T Consensus 460 ~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 460 SDAAVVGLKDEDAGEVPVAFVVKSEKSQAT---EDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred ceEEEEeeecCCCCceeEEEEEecCCCCCC---HHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 999999999998999999999998876655 6789999999999999999999999999999999999999987753
No 6
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.8e-80 Score=673.98 Aligned_cols=509 Identities=21% Similarity=0.295 Sum_probs=424.4
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
++.++|++++. .+|+++|+++. .+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 26 tl~~~l~~~a~-~~p~~~A~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 98 (539)
T 1mdb_A 26 TFGDLLRDRAA-KYGDRIAITCG------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRL 98 (539)
T ss_dssp CHHHHHHHHHH-HHTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HCCCCEEEEeC------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHc
Confidence 46678888887 79999999863 478999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcC
Q 006776 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 213 (631)
Q Consensus 134 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 213 (631)
|++++|++|.++.+++.+++++++++++|+++.... ......+......+ +.++.+++.....
T Consensus 99 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 161 (539)
T 1mdb_A 99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG----FDYRSLARQVQSKL----PTLKNIIVAGEAE--------- 161 (539)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETT----EEHHHHHHHHHHHC----TTCCCEEEESCCT---------
T ss_pred CeEEecCCCCCCHHHHHHHHHhCCCCEEEecccccc----ccHHHHHHHHHhcC----CCccEEEEcCCcc---------
Confidence 999999999999999999999999999999875321 11222333333333 5556555433211
Q ss_pred CCCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecccce
Q 006776 214 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 293 (631)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 293 (631)
.|.++........+.....++++++|+|||||||.||||+++|++++.... .....+++.++|++++.+|++|
T Consensus 162 ------~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~-~~~~~~~~~~~d~~l~~~p~~h 234 (539)
T 1mdb_A 162 ------EFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLK-RSVEVCWLDHSTVYLAALPMAH 234 (539)
T ss_dssp ------TSEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHH-HHHHHHTCCTTCEEEECSCTTS
T ss_pred ------chhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHH-HHHHhhCCCCCCEEEEeecccc
Confidence 011111111111122235678999999999999999999999999655544 3444678999999999999999
Q ss_pred ecchhH-HHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccC
Q 006776 294 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 372 (631)
Q Consensus 294 ~~g~~~-~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge 372 (631)
.++... .++.+|+.|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....++++||.+++|||
T Consensus 235 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 235 NYPLSSPGVLGVLYAGGRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAAS--SRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSS----SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHH--HCCCCCTTCCEEEEESS
T ss_pred cchhhHHHHHHHHHhCCEEEECCC----CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcc--ccCCCccceeEEEEcCC
Confidence 998755 68899999999999764 489999999999999999999999999987532 23457899999999999
Q ss_pred CCCHhHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCCCcCCC-ceEEeCCCCcccCCCcceeEEEe
Q 006776 373 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV-QPVIVDEKGVEIEGECSGYLCIK 451 (631)
Q Consensus 373 ~l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~g~~~~~g~~Gel~v~ 451 (631)
++++++.+++.+.++ +++++.||+||++.... ..........+++|+|+++. +++|+|++|++++.|+.|||+|+
T Consensus 309 ~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~-~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~ 384 (539)
T 1mdb_A 309 KFSAEAARRVKAVFG---CTLQQVFGMAEGLVNYT-RLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTR 384 (539)
T ss_dssp CCCHHHHTTHHHHTC---SEEEEEEECTTSCEEEC-CTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEE
T ss_pred CCCHHHHHHHHHHhC---CcEEEEEcCCCCccccc-CCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEee
Confidence 999999999999987 78999999999654332 21111112457899999764 79999999999999999999999
Q ss_pred cCCCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcCcccceEEE
Q 006776 452 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 531 (631)
Q Consensus 452 ~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~~~v 531 (631)
| |+++.|||++++.+...|.. +|||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|
T Consensus 385 g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~v 460 (539)
T 1mdb_A 385 G--PYTIRGYYKAEEHNAASFTE--DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAM 460 (539)
T ss_dssp C--TTSCSSCTTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEE
T ss_pred C--cccchhhcCChhhhhhhccC--CCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 9 99999999999998888764 7899999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhh-cCCCccCceEEECCCCCCCCCchhhHHHHHHHHhcCcCCC
Q 006776 532 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDEL 610 (631)
Q Consensus 532 v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~-l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~~~~~~~~ 610 (631)
++++++..++.++++|+.++. ..+ .++|+++|+++ |+.|++|+.|+++++||+|++||++|++|++.+.++++++
T Consensus 461 v~~~~~~~g~~~~a~vv~~~~-~~~---~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~~ 536 (539)
T 1mdb_A 461 VSMPDQFLGERSCVFIIPRDE-APK---AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAG 536 (539)
T ss_dssp EEEEETTTEEEEEEEEEESSS-CCC---HHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHTC
T ss_pred EeccccccCceEEEEEEECCC-CCC---HHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhcc
Confidence 999999889999999998743 233 57899999997 9999999999999999999999999999999998876655
Q ss_pred C
Q 006776 611 G 611 (631)
Q Consensus 611 ~ 611 (631)
+
T Consensus 537 y 537 (539)
T 1mdb_A 537 F 537 (539)
T ss_dssp -
T ss_pred c
Confidence 4
No 7
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.5e-79 Score=663.44 Aligned_cols=497 Identities=23% Similarity=0.342 Sum_probs=419.5
Q ss_pred hhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHhCCE
Q 006776 57 NCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 136 (631)
Q Consensus 57 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~v 136 (631)
++++++++ .+|+++|++.... ..+++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++
T Consensus 4 ~l~~~~a~-~~p~~~a~~~~~~---~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 79 (503)
T 4fuq_A 4 NLFARLFD-KLDDPHKLAIETA---AGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGV 79 (503)
T ss_dssp CHHHHHHS-CCSCTTSEEEEET---TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHH-hCCCCceEEEecC---CCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 56777777 7899999887543 2578999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcCCCC
Q 006776 137 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 216 (631)
Q Consensus 137 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 216 (631)
++|+++.++.+++.+++++++++++|+++..... +....... .. .+..+....
T Consensus 80 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~---------~~~~~~~~----~~--~~~~~~~~~------------ 132 (503)
T 4fuq_A 80 YLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDG---------IAAIAAKV----GA--TVETLGPDG------------ 132 (503)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTT---------THHHHHHH----TC--EEEECCTTS------------
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEECchhhHH---------HHHHHhhc----Cc--eEEEecCCc------------
Confidence 9999999999999999999999999998754321 11111221 11 222222111
Q ss_pred CccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecccceecc
Q 006776 217 RDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 296 (631)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g 296 (631)
...+.+...............++++++|+|||||||.||||+++|++++.+. ......+++.++|++++.+|++|.+|
T Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~~~~~p~~~~~g 210 (503)
T 4fuq_A 133 -RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNS-LTLVDYWRFTPDDVLIHALPIYHTHG 210 (503)
T ss_dssp -CSHHHHHHHTSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHH-HHHHHHTTCCTTCEEEECSCSSSHCC
T ss_pred -ccccchhhhcCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHH-HHHHHHhCCCCCCEEEEeCChHHHHH
Confidence 0111221111122222334568999999999999999999999999955444 44455789999999999999999999
Q ss_pred hhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccCCCCH
Q 006776 297 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 376 (631)
Q Consensus 297 ~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge~l~~ 376 (631)
....++.+++.|+++++.+. ++++.+++.++ ++|+++++|+++..|++... ....+++++|.+++||+++++
T Consensus 211 ~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gg~~l~~ 282 (503)
T 4fuq_A 211 LFVASNVTLFARGSMIFLPK----FDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--LTKETTGHMRLFISGSAPLLA 282 (503)
T ss_dssp CCCCHHHHHHTTCEEEECSS----CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--CSTTTTTTCCEEEECSSCCCH
T ss_pred HHHHHHHHHHhCCEEEEcCC----CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--ccccchhhcEEEEECCCCCCH
Confidence 77777888999999999764 48999999998 89999999999999998754 234567899999999999999
Q ss_pred hHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCCCcCCCceEEeC-CCCcccCCCcceeEEEecCCC
Q 006776 377 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWP 455 (631)
Q Consensus 377 ~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~p 455 (631)
++.+++.+.++ +++++.||+||++....... .....++++|+|+++++++|+| ++|++++.|+.|||+|+| |
T Consensus 283 ~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g--~ 355 (503)
T 4fuq_A 283 DTHREWSAKTG---HAVLERYGMTETNMNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKG--P 355 (503)
T ss_dssp HHHHHHHHHHS---CCEEECCEETTTEECBCCCS--SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEES--T
T ss_pred HHHHHHHHHhC---CCccceEcccccCcccccCC--CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEEC--C
Confidence 99999999997 78999999999987644322 2235678999999999999999 789999999999999999 9
Q ss_pred cccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcCcccceEEEEeee
Q 006776 456 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVE 535 (631)
Q Consensus 456 ~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~~~vv~~~ 535 (631)
+++.|||++++.+...|.. +|||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++
T Consensus 356 ~v~~GY~~~~~~t~~~f~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 433 (503)
T 4fuq_A 356 NVFKGYWRMPEKTKSEFRD--DGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVP 433 (503)
T ss_dssp TSCCCBTTCHHHHHHTBCT--TSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred chhhhhcCChhhhHhhhCC--CCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeE
Confidence 9999999999999888754 78999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHHHHhcC
Q 006776 536 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 606 (631)
Q Consensus 536 ~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~~~~ 606 (631)
++..++.++++|+.+++...+ .++++++++++|+.|++|+.|+++++||+|++||++|++|++.+.+.
T Consensus 434 ~~~~~~~~~a~v~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 434 HADFGEGVTAVVVRDKGATID---EAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp ETTTEEEEEEEEEECTTCCCC---HHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred chhcCceeEEEEEeCCCCCCC---HHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 998999999999998877666 57899999999999999999999999999999999999999998764
No 8
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.2e-79 Score=666.43 Aligned_cols=499 Identities=21% Similarity=0.301 Sum_probs=417.2
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
++.++|++++. .+|+++|+++. +...++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++
T Consensus 17 ~l~~~l~~~a~-~~p~~~A~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 91 (517)
T 3r44_A 17 NIGWMLRQRAT-VSPRLQAYVEP----STDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKL 91 (517)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEEG----GGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCCeEEEeC----CcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHh
Confidence 46788888888 79999999975 33568999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcC
Q 006776 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 213 (631)
Q Consensus 134 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 213 (631)
|++++|+++.++.+++.+++++++++++|+++... ..+....... .....++.+..
T Consensus 92 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~----------- 147 (517)
T 3r44_A 92 GAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA---------PVIDAIRAQA----DPPGTVTDWIG----------- 147 (517)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHHHHHHSS----SCCTTCCEEEE-----------
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEECCchH---------HHHHHHHhcc----CCccEEEEccC-----------
Confidence 99999999999999999999999999999986532 2333322222 22111111110
Q ss_pred CCCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecccce
Q 006776 214 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 293 (631)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 293 (631)
...+.+.........+.....++++++|+|||||||.||||+++|++++... ......+++.++|++++.+|++|
T Consensus 148 ----~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~~ 222 (517)
T 3r44_A 148 ----ADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAA-SSWASTIDVRYRDRLLLPLPMFH 222 (517)
T ss_dssp ----HHHHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHH-HHHHHHSCCCTTCEEEECSCTTS
T ss_pred ----cccHHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHH-HHHHHhcCCCCCCEEEEeCchHH
Confidence 0112233322222233344678999999999999999999999999965444 44455679999999999999999
Q ss_pred ecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccCC
Q 006776 294 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 373 (631)
Q Consensus 294 ~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge~ 373 (631)
..+....++. ++.|+++++.+. +++..+++.++++++|++.++|+++..|.+... ....++++||.+++|||+
T Consensus 223 ~~~~~~~~~~-~~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~i~~gGe~ 295 (517)
T 3r44_A 223 VAALTTVIFS-AMRGVTLISMPQ----FDATKVWSLIVEERVCIGGAVPAILNFMRQVPE--FAELDAPDFRYFITGGAP 295 (517)
T ss_dssp HHHHHHHHHH-HHHTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH--HHHCCCTTCCEEEECSSC
T ss_pred HHHHHHHHHH-HhcCeEEEEeCC----CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc--cccCCCCcccEEEECCCC
Confidence 9987554555 449999999764 489999999999999999999999999987642 234578999999999999
Q ss_pred CCHhHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCCCcCCCceEEeCCCCcccCCCcceeEEEecC
Q 006776 374 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 453 (631)
Q Consensus 374 l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~Gel~v~~~ 453 (631)
+++++.+++.+. + +++++.||+||+++..+...........+++|.|.++++++|+|++|.+++.| .|||+|+|
T Consensus 296 l~~~~~~~~~~~-~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g- 369 (517)
T 3r44_A 296 MPEALIKIYAAK-N---IEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKS- 369 (517)
T ss_dssp CCHHHHHHHHHT-T---CEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEE-
T ss_pred CCHHHHHHHHhc-C---CcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeC-
Confidence 999999999876 4 79999999999987655443333345678999999999999999999999998 89999999
Q ss_pred CCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcCcccceEEEEe
Q 006776 454 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG 533 (631)
Q Consensus 454 ~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~~~vv~ 533 (631)
|+++.|||++++.+...|. +|||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++
T Consensus 370 -~~v~~GY~~~p~~t~~~f~---~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~ 445 (517)
T 3r44_A 370 -DILLKEYWNRPEATRDAFD---NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIG 445 (517)
T ss_dssp -TTSCSEETTCHHHHHHTEE---TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred -cchhhhhCCChhhhHhhhc---CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEe
Confidence 9999999999998888773 799999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHHHHhcCc
Q 006776 534 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 607 (631)
Q Consensus 534 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~~~~~ 607 (631)
++++..++.++++| +.++...+ .++|+++|+++|+.|++|+.|+++++||+|++||++|++|++.+.+.+
T Consensus 446 ~~~~~~g~~~~a~v-~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 446 LPDEKWGEIAAAIV-VADQNEVS---EQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp EEETTTEEEEEEEE-EECTTTCC---HHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred ccccccCceEEEEE-ECCCCCCC---HHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 99998889888888 55554444 578999999999999999999999999999999999999999998754
No 9
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=4e-80 Score=675.75 Aligned_cols=512 Identities=21% Similarity=0.301 Sum_probs=391.3
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCC--CCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHH
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEAND--PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 131 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~ 131 (631)
++.++|++++. .+|+++|+++.+.. .+..+++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+
T Consensus 20 ~l~~~l~~~a~-~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 98 (549)
T 3g7s_A 20 SLADRIDAAAE-KFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALW 98 (549)
T ss_dssp CTTHHHHHHHH-HHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 35678888887 79999999987521 1234889999999999999999999999999999999999999999999999
Q ss_pred HhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccC
Q 006776 132 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 211 (631)
Q Consensus 132 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 211 (631)
++|++++|++|.++.+++.+++++++++++|+++... ..+...... ..++.+++....
T Consensus 99 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~-------- 156 (549)
T 3g7s_A 99 RVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY---------ENFKPVLEK-----TGVERVFVVGGE-------- 156 (549)
T ss_dssp HTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGH---------HHHHHHHTT-----SCCCEEEEETCS--------
T ss_pred HhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHH---------HHHHHHHhh-----CCCcEEEEeCCC--------
Confidence 9999999999999999999999999999999987532 223333222 234555544321
Q ss_pred cCCCCCccchhhhcccCCCCCCceecCC-CCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecc
Q 006776 212 KWQDGRDIWWQDVVPKYPTKCEVEWVDA-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 290 (631)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 290 (631)
...+.+.........+.....+ +++++|+|||||||.||||+++|++++.+.. .....+++.++|++++.+|
T Consensus 157 ------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~~~~~p 229 (549)
T 3g7s_A 157 ------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANAL-QLAVATGLSHMDTIVGCMP 229 (549)
T ss_dssp ------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHH-HHHHHHCCCTTCEEECCSC
T ss_pred ------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHH-HHHHHcCCCCCCEEEEeCc
Confidence 1224444333222222222334 8999999999999999999999999655544 4445688999999999999
Q ss_pred cceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEc
Q 006776 291 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 370 (631)
Q Consensus 291 ~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~ 370 (631)
++|..++.. ++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|.+.........+++++|.+++|
T Consensus 230 ~~~~~~~~~-~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~g 304 (549)
T 3g7s_A 230 MFHSAEFGL-VNLMVTVGNEYVVMGM----FNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATG 304 (549)
T ss_dssp TTSHHHHHH-HTTHHHHCCEEEEESS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEE
T ss_pred HHHHHHHHH-HHHHHhcCceEEEcCC----CCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeC
Confidence 999988754 6788999999999864 58999999999999999999999999998764332233578999999999
Q ss_pred cCCCCHhHHHHHHHH----hCCCCcceecccccccccceecccCCCCCCCCCCCcCCCcCCCceEEeC-CCCcccCCCcc
Q 006776 371 GEPINPSAWRWFFNV----VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECS 445 (631)
Q Consensus 371 Ge~l~~~~~~~~~~~----~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~ 445 (631)
|+++++++.+++.+. ++..++++++.||+||++++++...... ....+++|.|+++++++|+| ++|++++.|+.
T Consensus 305 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~ 383 (549)
T 3g7s_A 305 AWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVISLEDGRELGVGES 383 (549)
T ss_dssp SSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEECSSSCCEECTTCC
T ss_pred CccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEEeCCCCcCCCCCCc
Confidence 999999999999888 6644589999999999998766544322 24678899999999999999 79999999999
Q ss_pred eeEEEecCCCcccccccCCchhhhhhccccCCC--eEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcC
Q 006776 446 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSH 523 (631)
Q Consensus 446 Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g--~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~ 523 (631)
|||+|+| |+++.|||++++.+...|+...+| ||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+|
T Consensus 384 GEl~v~g--~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (549)
T 3g7s_A 384 GEIVIRG--PNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKH 461 (549)
T ss_dssp EEEEEES--TTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTS
T ss_pred eEEEEEC--cchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhC
Confidence 9999999 999999999999998888644467 999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEeeecCCCCeeEEEEEEeCCC--CCCcHHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHH
Q 006776 524 PQCAEAAVVGVEHEVKGQGIYAFVTLVEG--VPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601 (631)
Q Consensus 524 ~~V~~~~vv~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~ 601 (631)
|+|.+++|++++++..++.++++|+++++ ...+ .++|+++|+++|+.|++|+.|+++++||+|++||++|++|++
T Consensus 462 p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~ 538 (549)
T 3g7s_A 462 EAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVD---EEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLRE 538 (549)
T ss_dssp TTEEEEEEECCCC------CEEEEEECSTTTTSCC---HHHHHHHHHTTCC-----CCCCEEEECC--------------
T ss_pred CCeeeEEEEeeEccccCceEEEEEEECCCccCcCC---HHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHH
Confidence 99999999999998889999999999876 3333 678999999999999999999999999999999999999999
Q ss_pred HHhcC
Q 006776 602 IASRQ 606 (631)
Q Consensus 602 ~~~~~ 606 (631)
.+..+
T Consensus 539 ~~~~~ 543 (549)
T 3g7s_A 539 KEAEG 543 (549)
T ss_dssp -----
T ss_pred Hhhcc
Confidence 88765
No 10
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.1e-78 Score=663.30 Aligned_cols=509 Identities=19% Similarity=0.230 Sum_probs=423.5
Q ss_pred hhh-hhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 55 CYN-CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 55 ~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
+.+ ++.+++. .+ +++|+++.. ..+++||+||.+++.++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 27 l~~~~l~~~~~-~~-~~~A~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~ 100 (548)
T 2d1s_A 27 TQLRKYMERYA-KL-GAIAFTNAV----TGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFI 100 (548)
T ss_dssp HHHHHHHHHHH-HH-TCEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHH
T ss_pred HHHHHHHhhhc-cc-CCceEEEcC----CCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhh
Confidence 445 6666666 57 999998631 2578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcC
Q 006776 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 213 (631)
Q Consensus 134 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 213 (631)
|++++|+++.++.+++.+++++++++++|+++... ..+......+ +....++.++....
T Consensus 101 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~-------- 159 (548)
T 2d1s_A 101 GVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGL---------DKVITVQKTV----TTIKTIVILDSKVD-------- 159 (548)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTH---------HHHHHHHHHS----TTCCEEEETTCSSC--------
T ss_pred CCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHH---------HHHHHHhcCC----CCCCEEEEeCCccc--------
Confidence 99999999999999999999999999999987542 2233333333 33445554432110
Q ss_pred CCCCccchhhhcccCCCC-CCceecC-----C-CCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHh--cCCCCCcE
Q 006776 214 QDGRDIWWQDVVPKYPTK-CEVEWVD-----A-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDV 284 (631)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~-~~~~~~~-----~-~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~--~~~~~~d~ 284 (631)
......|.++....... .+..... + +++++|+|||||||.||||+++|++++.......... +++.++|+
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~ 238 (548)
T 2d1s_A 160 -YRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTA 238 (548)
T ss_dssp -BTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCE
T ss_pred -ccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccce
Confidence 00112344443322111 1111222 3 8999999999999999999999999665544432211 67889999
Q ss_pred EEEecccceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCce
Q 006776 285 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 364 (631)
Q Consensus 285 ~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~l 364 (631)
+++.+|++|.+|....++.++ .|+++++.+. ++++.+++.|+++++|+++++|++++.|.+... ....++++|
T Consensus 239 ~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~l 311 (548)
T 2d1s_A 239 VLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTK----FDEETFLKTLQDYKCTSVILVPTLFAILNKSEL--LNKYDLSNL 311 (548)
T ss_dssp EEECSCTTSHHHHHHHHHHHH-TTCEEEECCC----CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--GGGSCCTTC
T ss_pred EEEeccHHHHHHHHHHHHHHh-cCcEEEEcCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--cccccccce
Confidence 999999999998765567777 9999999764 489999999999999999999999999998653 234578999
Q ss_pred eEEEEccCCCCHhHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCCCcCCCceEEeC-CCCcccCCC
Q 006776 365 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGE 443 (631)
Q Consensus 365 r~v~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g 443 (631)
|.+++|||++++++.+++.+.++ ++.+++.||+||+++.++..... ..+.+++|+|+|+++++|+| ++|++++.|
T Consensus 312 r~i~~gG~~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g 387 (548)
T 2d1s_A 312 VEIASGGAPLSKEVGEAVARRFN--LPGVRQGYGLTETTSAIIITPEG--DDKPGASGKVVPLFKAKVIDLDTKKSLGPN 387 (548)
T ss_dssp CEEEECSSCCCHHHHHHHHHHTT--CSCCEEEEECGGGSSEEEECCTT--CCCTTCCBEECTTCEEEEECTTTCCBCCTT
T ss_pred eEEEEcCccCCHHHHHHHHHHcC--CCceeeccccccccceeeecCcc--cCCCCCCCccCCCceEEEEeCCcCccCCCC
Confidence 99999999999999999999996 47899999999999766543222 35678999999999999999 689999999
Q ss_pred cceeEEEecCCCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcC
Q 006776 444 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSH 523 (631)
Q Consensus 444 ~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~ 523 (631)
+.|||+|+| |+++.|||++++.+...|.. +|||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.+|
T Consensus 388 ~~GEl~v~g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 463 (548)
T 2d1s_A 388 RRGEVCVKG--PMLMKGYVNNPEATKELIDE--EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQH 463 (548)
T ss_dssp CCEEEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTS
T ss_pred CCeEEEECC--HHHhhhhcCChHHhhhcccC--CcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhC
Confidence 999999999 99999999999988877743 78999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhcCCCccCc-eEEECCCCCCCCCchhhHHHHHHH
Q 006776 524 PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPD-KIHWAPGLPKTRSGKIMRRILRKI 602 (631)
Q Consensus 524 ~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~-~i~~v~~lP~t~sGKi~r~~l~~~ 602 (631)
|+|.+|+|++++++..|+.++++|+++++...+ .++|+++|+++|+.+++|+ .|+++++||+|++||++|+.|+++
T Consensus 464 p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~ 540 (548)
T 2d1s_A 464 PSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT---EKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREI 540 (548)
T ss_dssp TTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHH
T ss_pred CCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCC---HHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHH
Confidence 999999999999998899999999998776555 6789999999999999999 999999999999999999999999
Q ss_pred HhcCcCC
Q 006776 603 ASRQLDE 609 (631)
Q Consensus 603 ~~~~~~~ 609 (631)
+.+.+++
T Consensus 541 ~~~~i~~ 547 (548)
T 2d1s_A 541 LKKPVAK 547 (548)
T ss_dssp HHSCC--
T ss_pred Hhhhhhc
Confidence 9887643
No 11
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=4.7e-78 Score=652.72 Aligned_cols=487 Identities=22% Similarity=0.249 Sum_probs=409.1
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
++.++|++++. .+|+++|+++.. ..+++||+||.+++.++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 3 tl~~~l~~~a~-~~p~~~a~~~~~----~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 3 TVNEMLRRAAT-RAPDHCALAVPA----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEETT----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-hCCCceEEEEcC----CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 46678888888 799999998642 2478999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEE--eCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccC
Q 006776 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVIT--SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 211 (631)
Q Consensus 134 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 211 (631)
|++++|+++.++.+++.+++++++++++|+ ++... .. ..... +.++ ++.+.
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~~---~~~~~----~~~~-~~~~~---------- 130 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA---------DA---IFQSG----SGAR-IIFLG---------- 130 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHH---------HH---HHHHC----CCCE-EEEGG----------
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhh---------hh---hhhcc----ccce-eEEec----------
Confidence 999999999999999999999999999998 44321 11 10111 2222 22111
Q ss_pred cCCCCCccchhhhcccC-----CCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCC--CCCcE
Q 006776 212 KWQDGRDIWWQDVVPKY-----PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY--KPSDV 284 (631)
Q Consensus 212 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~--~~~d~ 284 (631)
++.... ....+.....++++++|+|||||||.||||+++|+++..... .....+++ .++++
T Consensus 131 -----------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~-~~~~~~~~~~~~~~~ 198 (504)
T 1t5h_X 131 -----------DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVL-FMSTQVGLRHGRHNV 198 (504)
T ss_dssp -----------GTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHH-HHHHTTCCCSSTTCE
T ss_pred -----------chhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHH-HHHHhhCCCCCCCce
Confidence 111100 011111234678999999999999999999999999654443 33445677 78999
Q ss_pred EEEecccceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCce
Q 006776 285 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 364 (631)
Q Consensus 285 ~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~l 364 (631)
+++.+|++|..|....++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|.+.........++++|
T Consensus 199 ~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~l 274 (504)
T 1t5h_X 199 VLGLMPLYHVVGFFAVLVAALALDGTYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSL 274 (504)
T ss_dssp EEECSCTTSHHHHTTTHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTC
T ss_pred EEeecchhhcchHHHHHHHHHHcCceEEeCCC----CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccc
Confidence 99999999999976778899999999999864 48999999999999999999999999998764221234568999
Q ss_pred eEEEEccCCCCHhHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCCCcCCCceEEeCCCC---cccC
Q 006776 365 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG---VEIE 441 (631)
Q Consensus 365 r~v~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g---~~~~ 441 (631)
|.+++|||++++++.+++.+.++ +.+++.||+||++.... .. ....+++|.|.++++++|+|+++ ++++
T Consensus 275 r~~~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~-~~----~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~ 346 (504)
T 1t5h_X 275 RHVTFAGATMPDAVLETVHQHLP---GEKVNIYGTTEAMNSLY-MR----QPKTGTEMAPGFFSEVRIVRIGGGVDEIVA 346 (504)
T ss_dssp CEEEECCTTCCHHHHHHHHHHCC---SEEEEEEEETTTEEEEE-EE----SCSSSSEEBCCTTCCEEEECTTSCTTCBCC
T ss_pred cEEEEcCCcCCHHHHHHHHHhcC---cceeeeecccccccccc-cc----CCCCCccccCCCCCceeEEeccCCCCCcCC
Confidence 99999999999999999999987 68999999999943222 11 24568899999999999999988 8999
Q ss_pred CCcceeEEEe-cCCCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHH
Q 006776 442 GECSGYLCIK-SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESAL 520 (631)
Q Consensus 442 ~g~~Gel~v~-~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l 520 (631)
.|+.|||+|+ + |+++.|||++++.+...|. +|||+|||+|++|+||+++++||.||+||++|++|+|.|||++|
T Consensus 347 ~g~~GEl~v~gg--~~~~~GY~~~~~~t~~~f~---~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l 421 (504)
T 1t5h_X 347 NGEEGELIVAAS--DSAFVGYLNQPQATAEKLQ---DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421 (504)
T ss_dssp TTCCEEEEEECC--TTSCCCBTTCHHHHHHHEE---TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHH
T ss_pred CCCcceEEEeCC--ceeeceecCCchhhhhhhc---CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHH
Confidence 9999999999 8 9999999999998888773 79999999999999999999999999999999999999999999
Q ss_pred hcCcccceEEEEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHh-hcCCCccCceEEECCCCCCCCCchhhHHHH
Q 006776 521 VSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 599 (631)
Q Consensus 521 ~~~~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~-~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l 599 (631)
.+||+|.+|+|++++++..++.++++|+++++...+ .++|+++|++ +|+.|++|+.|+++++||+|++||++|++|
T Consensus 422 ~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L 498 (504)
T 1t5h_X 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLS---ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498 (504)
T ss_dssp TTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCC---HHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHH
T ss_pred HhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcC---HHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHH
Confidence 999999999999999998899999999998776555 5689999998 899999999999999999999999999999
Q ss_pred HHHHh
Q 006776 600 RKIAS 604 (631)
Q Consensus 600 ~~~~~ 604 (631)
++.+.
T Consensus 499 ~~~~~ 503 (504)
T 1t5h_X 499 VQQVS 503 (504)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 99874
No 12
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.1e-77 Score=653.96 Aligned_cols=512 Identities=25% Similarity=0.320 Sum_probs=412.4
Q ss_pred cccCCCchhHhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHH
Q 006776 45 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 124 (631)
Q Consensus 45 ~wf~~~~~n~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~ 124 (631)
-+++.+.+|++.+++++++. +|+++|+++. .+++||+||.+++.++|++|+++|+++||+|+++++|+++++
T Consensus 16 ~~~~p~~~~~~~~~l~~~~~--~p~~~A~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~ 87 (529)
T 2v7b_A 16 VEAPPALFNFAAYLFRLNET--RAGKTAYIDD------TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALP 87 (529)
T ss_dssp ------CCCHHHHHHHHTGG--GTTSEEEECS------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHH
T ss_pred eecCccceeHHHHHHHhhhc--cCCceEEEeC------CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH
Confidence 34566778999999998876 8999999853 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCc-cEEEEEecC
Q 006776 125 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV-DVCLTYENQ 203 (631)
Q Consensus 125 v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vi~~~~~ 203 (631)
+++|||+++|++++|+++.++.+++.+++++++++++|+++... ..+....... +.+ ..+++++..
T Consensus 88 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~ 154 (529)
T 2v7b_A 88 VAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV---------QNVTQALESA----EHDGCQLIVSQPR 154 (529)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH---------HHHHHHHHCC-------CCEEEEECC-
T ss_pred HHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh---------hHHHHHHhhc----cccCceEEEeccc
Confidence 99999999999999999999999999999999999999987532 2222222211 233 344443321
Q ss_pred CccccccCcCCCCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCc
Q 006776 204 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSD 283 (631)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d 283 (631)
.. . ......|.++........+.....++++++|+|||||||.||||+++|+++...........+++.++|
T Consensus 155 ~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d 226 (529)
T 2v7b_A 155 ES-----E---PRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAEND 226 (529)
T ss_dssp -------------CCCBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTC
T ss_pred cc-----c---cccccchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCc
Confidence 10 0 000113444443222222233456899999999999999999999999996344443334456788999
Q ss_pred EEEEecccceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCc
Q 006776 284 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 363 (631)
Q Consensus 284 ~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~ 363 (631)
++++.+|++|.+|+...++.++..|+++++... .+++..+++.++++++|++.++|+++..+++..... .....+
T Consensus 227 ~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--~~~~~~ 301 (529)
T 2v7b_A 227 VVFSAAKLFFAYGLGNGLTFPLSVGATAILMAE---RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLP--ARADVA 301 (529)
T ss_dssp EEEESSCTTSHHHHHHHTHHHHHHTCEEECCCS---CCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCC--CGGGCC
T ss_pred EEEEeecHHHHHHHHHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccc--cccCCc
Confidence 999999999999976677889999999998742 258999999999999999999999999998764321 111248
Q ss_pred eeEEEEccCCCCHhHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCCCcCCCceEEeCCCCcccCCC
Q 006776 364 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGE 443 (631)
Q Consensus 364 lr~v~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g 443 (631)
+|.+++|||++++++.+++.+.++ +++++.||+||++++.+....+. ...+++|+|+++++++|+|++|++++.|
T Consensus 302 lr~~~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~g~~~~~g 376 (529)
T 2v7b_A 302 IRICTSAGEALPREIGERFTAHFG---CEILDGIGSTEMLHIFLSNRAGA--VEYGTTGRPVPGYEIELRDEAGHAVPDG 376 (529)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHHS---CCEEEEEECTTTSSEEEECCTTC--CCTTSCCEECTTCEEEEECTTSCBCCTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhC---CceeeeEchhhcCceeeccccCC--CccCCcccCCCCCEEEEECCCCCCCCCC
Confidence 999999999999999999999987 78999999999976655443332 4678999999999999999999999999
Q ss_pred cceeEEEecCCCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcC
Q 006776 444 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSH 523 (631)
Q Consensus 444 ~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~ 523 (631)
+.|||+|+| |+++.|||++++.+...|. +|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.+|
T Consensus 377 ~~GEl~v~g--~~~~~gY~~~~~~t~~~f~---~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 451 (529)
T 2v7b_A 377 EVGDLYIKG--PSAAVMYWNNREKSRATFL---GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQH 451 (529)
T ss_dssp SCEEEEEEC--TTCCCCBTTCHHHHHHHEE---TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTS
T ss_pred CccEEEEec--CCcccccCCChHHHHHhhh---cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhC
Confidence 999999999 9999999999998887774 68999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHH
Q 006776 524 PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601 (631)
Q Consensus 524 ~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~ 601 (631)
|+|.+++|+++ ++..++.++++|++.++...++.+.++|+++|+++|+.|++|+.++++++||+|++||++|++|++
T Consensus 452 p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 452 DAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp TTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred CCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 99999999999 666788899999988765434445678999999999999999999999999999999999999986
No 13
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.1e-78 Score=662.70 Aligned_cols=506 Identities=23% Similarity=0.282 Sum_probs=385.5
Q ss_pred hhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHhC
Q 006776 55 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 134 (631)
Q Consensus 55 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G 134 (631)
+.++|++++. .+|+++|+++.+. +..+++||+||.+++.++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus 20 l~~~l~~~a~-~~p~~~a~~~~~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 96 (541)
T 1v25_A 20 LWDFLERAAA-LFGRKEVVSRLHT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 96 (541)
T ss_dssp THHHHHHHHH-HSTTCEEEEECTT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-hCCCceEEEEecC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 5678888887 7999999987532 346899999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcCC
Q 006776 135 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 214 (631)
Q Consensus 135 ~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 214 (631)
++++|+++.++.+++.++|++++++++|+++... ..+......+ +.++.+++++....
T Consensus 97 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~--------- 154 (541)
T 1v25_A 97 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL---------PLVEAIRGEL----KTVQHFVVMDEKAP--------- 154 (541)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHHHHGGGC----SSCCEEEESSSCCC---------
T ss_pred cEEEecCcccCHHHHHHHHHhCCCcEEEEChhHH---------HHHHHHHhhC----CCccEEEEecCCCC---------
Confidence 9999999999999999999999999999986432 2233322222 45566665443210
Q ss_pred CCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHH-HHHhcCCCCCcEEEEecccce
Q 006776 215 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT-FKYAFDYKPSDVYWCTADCGW 293 (631)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~-~~~~~~~~~~d~~~~~~~~~~ 293 (631)
.....|.+........ ....++++++|+|||||||.||||+++|++++.+.... ....+++.++|++++.+|++|
T Consensus 155 -~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 230 (541)
T 1v25_A 155 -EGYLAYEEALGEEADP---VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFH 230 (541)
T ss_dssp -TTCEEHHHHCCSCCCC---CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTS
T ss_pred -cccccHHHHhhccCCc---ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchh
Confidence 0123355544332221 23567899999999999999999999999965544332 223467889999999999999
Q ss_pred ecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccCC
Q 006776 294 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 373 (631)
Q Consensus 294 ~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge~ 373 (631)
..+. ..++.+++.|+++++.+.. +++..+++.|+++++|+++++|+++..|.+... ....++++||.+++|||+
T Consensus 231 ~~~~-~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~~ 304 (541)
T 1v25_A 231 VNAW-CLPYAATLVGAKQVLPGPR---LDPASLVELFDGEGVTFTAGVPTVWLALADYLE--STGHRLKTLRRLVVGGSA 304 (541)
T ss_dssp HHHH-THHHHHHHHTCEEEECTTC---CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH--HHTCCCSSCCEEEECSSC
T ss_pred hhHH-HHHHHHHhcCceEEeeCCC---CCHHHHHHHHHhcCeeEEecchHHHHHHHhhhh--ccCCcchhccEEEECCCC
Confidence 9886 4567889999999997532 489999999999999999999999999987532 123467899999999999
Q ss_pred CCHhHHHHHHHHhCCCCcceecccccccccceecccCCCCC---------CCCCCCcCCCcCCCceEEeCCCCcccCC--
Q 006776 374 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW---------PQKPGSATFPFFGVQPVIVDEKGVEIEG-- 442 (631)
Q Consensus 374 l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~---------~~~~~~~G~p~~~~~~~i~d~~g~~~~~-- 442 (631)
+++++.+++ +.++ +++++.||+||++++++....... ....+++|+|+++++++|+|++|++++.
T Consensus 305 l~~~~~~~~-~~~g---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~ 380 (541)
T 1v25_A 305 APRSLIARF-ERMG---VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDG 380 (541)
T ss_dssp CCHHHHHHH-HHTT---CEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSS
T ss_pred CCHHHHHHH-HHhC---CceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCC
Confidence 999999999 6665 789999999999977654432210 0235789999999999999999999984
Q ss_pred CcceeEEEecCCCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhc
Q 006776 443 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVS 522 (631)
Q Consensus 443 g~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~ 522 (631)
++.|||+|+| |+++.|||++++.+...|.. +|||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+
T Consensus 381 ~~~GEl~v~g--~~v~~GY~~~p~~t~~~f~~--~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 456 (541)
T 1v25_A 381 KALGEVQLKG--PWITGGYYGNEEATRSALTP--DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMG 456 (541)
T ss_dssp CCCEEEEEES--TTSBSSCBTCHHHHHTTBCT--TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC---
T ss_pred CcceEEEEeC--cchhccccCChhhhhhhccC--CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHh
Confidence 3689999999 99999999999988887753 7999999999999999999999999999999999999999999999
Q ss_pred CcccceEEEEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHh-hcCCCccCceEEECCCCCCCCCchhhHHHHHH
Q 006776 523 HPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601 (631)
Q Consensus 523 ~~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~-~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~ 601 (631)
||+|.+|+|++++++..++.++++|++. +...+ .+++++++++ +|+.|++|+.++++++||+|++||++|++|++
T Consensus 457 ~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~---~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 532 (541)
T 1v25_A 457 HPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPT---PEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALRE 532 (541)
T ss_dssp -------CEEEEECSSSSEEEEECC-----------------------CCCTTTSCSBC--------------CCTTHHH
T ss_pred CCCceEEEEEEecCCCcCceEEEEEEEC-CCCCC---HHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHH
Confidence 9999999999999998899999999876 32222 5678889998 89999999999999999999999999999999
Q ss_pred HHhcCc
Q 006776 602 IASRQL 607 (631)
Q Consensus 602 ~~~~~~ 607 (631)
.+.+.+
T Consensus 533 ~~~~~~ 538 (541)
T 1v25_A 533 QYKNYY 538 (541)
T ss_dssp HSTTSS
T ss_pred HHHHhh
Confidence 987654
No 14
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1e-78 Score=663.42 Aligned_cols=506 Identities=23% Similarity=0.291 Sum_probs=329.4
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
++.++|++++. .+|+++|+++. .+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 31 tl~~~l~~~a~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 103 (544)
T 3o83_A 31 PLTRILTVGVQ-SHPHSLAIICG------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKA 103 (544)
T ss_dssp CTTHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCceEEEcC------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 35678888888 79999999953 578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcC
Q 006776 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 213 (631)
Q Consensus 134 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 213 (631)
|++++|+++.++.+++.+++++++++++|+++.... .............. +....++.......
T Consensus 104 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------- 167 (544)
T 3o83_A 104 GVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEV----FSNNQFIDSLHDVN----LSPEIILMLNHQAT-------- 167 (544)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGG----GSSSHHHHHHHHTT----CCCSEEEEETCCTT--------
T ss_pred CcEEecCCCCCCHHHHHHHHHhcCeeEEEEcccccc----ccHHHHHHHHhhcc----cCcceEEEecCCcc--------
Confidence 999999999999999999999999999999875421 11112223322222 55555555443211
Q ss_pred CCCCccchhhhcccCC-CCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecccc
Q 006776 214 QDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 292 (631)
Q Consensus 214 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~ 292 (631)
...+.+...... ...+.....++++++|+|||||||.||||+++|++++.+.. .....+++.++|++++.+|++
T Consensus 168 ----~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~-~~~~~~~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 ----DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVR-ASAEICGLNSNTRLLCALPAP 242 (544)
T ss_dssp ----SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHH-HHHHHTTCCTTCEEEECSCTT
T ss_pred ----ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHH-HHHHHhCCCCCCeEEEecCcc
Confidence 111222221111 11122345689999999999999999999999999655544 445568999999999999999
Q ss_pred eecchhH-HHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEcc
Q 006776 293 WITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 371 (631)
Q Consensus 293 ~~~g~~~-~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~G 371 (631)
|.++... .++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|++.... ...++++||.+++||
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~i~~gG 316 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPN----PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ--YKDQIQSLKLLQVGG 316 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTT--THHHHTTCCEEEEES
T ss_pred eEeecchHHHHHHHHcCCEEEECCC----CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhh--ccccCCcceEEEEcC
Confidence 9988754 57889999999999765 4899999999999999999999999999876432 234678999999999
Q ss_pred CCCCHhHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCCCc-CCCceEEeCCCCcccCCCcceeEEE
Q 006776 372 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCI 450 (631)
Q Consensus 372 e~l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~d~~g~~~~~g~~Gel~v 450 (631)
+++++++.+++.+.++ +++++.||+||++....... .......+++|+|+ ++++++|+|++|++++.|+.|||+|
T Consensus 317 ~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v 392 (544)
T 3o83_A 317 ASFPESLARQVPEVLN---CKLQQVFGMAEGLVNYTRLD-DSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLAT 392 (544)
T ss_dssp SCCCHHHHTHHHHHHC---SEEEEEEECTTSCEEECCTT-SCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHhC---CcEEeeeccccccceeecCC-CchhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEE
Confidence 9999999999999997 78999999999885443221 11123456899996 8999999999999999999999999
Q ss_pred ecCCCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcCcccceEE
Q 006776 451 KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAA 530 (631)
Q Consensus 451 ~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~~~ 530 (631)
+| |+++.|||++++.+...|.. +|||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.+||+|.+++
T Consensus 393 ~g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 468 (544)
T 3o83_A 393 RG--PYTFCGYYQSPEHNSQVFDE--DNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAA 468 (544)
T ss_dssp EC--TTSCSCCTTCHHHHHHHBCT--TCCEEEEEEEEECTTSCEEEEEEEC-----------------------------
T ss_pred ec--CCcchhhcCChhhhhhhCCC--CCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEE
Confidence 99 99999999999998888754 799999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHh-hcCCCccCceEEECCCCCCCCCchhhHHHHHHHHhc
Q 006776 531 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 605 (631)
Q Consensus 531 vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~-~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~~~ 605 (631)
|++++++..|+.++++|+..+.. . ..+++++++++ .|+.|++|+.|+++++||+|++||++|++|++++..
T Consensus 469 vv~~~~~~~g~~~~a~vv~~~~~-~---~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 469 LVAIVDEQFGEKSCAFIVSRNPE-L---KAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEeccCCCCCceEEEEEEeCCCC-C---CHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence 99999998899999999987632 1 25678888888 799999999999999999999999999999998764
No 15
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.5e-77 Score=648.65 Aligned_cols=496 Identities=19% Similarity=0.245 Sum_probs=413.1
Q ss_pred hhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHhC
Q 006776 55 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 134 (631)
Q Consensus 55 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G 134 (631)
+.++|++++. .+|+++|+++. .+++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|
T Consensus 3 l~~~l~~~a~-~~p~~~A~~~~------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G 75 (512)
T 3fce_A 3 LLEQIEKWAA-ETPDQTAFVWR------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAG 75 (512)
T ss_dssp HHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HCCCceEEEeC------CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 3467788887 79999999964 4789999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcCC
Q 006776 135 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 214 (631)
Q Consensus 135 ~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 214 (631)
++++|+++.++.+++.+++++++++++|++........ .. .++...
T Consensus 76 ~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~--------------------~~-~~~~~~------------- 121 (512)
T 3fce_A 76 HAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDL--------------------PV-RIVSED------------- 121 (512)
T ss_dssp CCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSCC--------------------SS-EEEETH-------------
T ss_pred CEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccccc--------------------cc-ceechh-------------
Confidence 99999999999999999999999999998754321100 00 000000
Q ss_pred CCCccchhhhc--ccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecccc
Q 006776 215 DGRDIWWQDVV--PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 292 (631)
Q Consensus 215 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~ 292 (631)
.+.+.. .......+.....++++++|+|||||||.||||+++|++++... ......+++.++|++++.+|++
T Consensus 122 -----~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~ 195 (512)
T 3fce_A 122 -----NLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFT-KWAVEDFNLQTGQVFLNQAPFS 195 (512)
T ss_dssp -----HHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHH-HHHHHHTTCCSSCEEEECSCTT
T ss_pred -----hhhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHH-HHHHHhcCCCCCCEEEEeCCcc
Confidence 000000 00011112233568999999999999999999999999965444 4445568999999999999999
Q ss_pred eecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccC
Q 006776 293 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 372 (631)
Q Consensus 293 ~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge 372 (631)
|..+. ..++.+++.|+++++.+... ..++..+++.++++++|++.++|+++..++.... ....+++++|.+++|||
T Consensus 196 ~~~~~-~~~~~~l~~G~~~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~~G~ 271 (512)
T 3fce_A 196 FDLSV-MDIYPSLVTGGTLWAIDKDM-IARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS--FSESMLPNMKTFLFCGE 271 (512)
T ss_dssp SGGGH-HHHHHHHHTTCEEEECCHHH-HHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT--CSTTTSTTCCEEEECSS
T ss_pred HhHHH-HHHHHHHhCCCEEEECCHHH-hhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc--ccchhCccccEEEEecC
Confidence 99986 56789999999999976411 1378899999999999999999999999887653 23457899999999999
Q ss_pred CCCHhHHHHHHHHhCCCCcceecccccccccceecccCCCC---CCCCCCCcCCCcCCCceEEeCCCCcccCCCcceeEE
Q 006776 373 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 449 (631)
Q Consensus 373 ~l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~---~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~Gel~ 449 (631)
++++++.+++.+.++ ++++++.||+||+++.++...... ......++|+|.++++++|+|++|++++.|+.|||+
T Consensus 272 ~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~ 349 (512)
T 3fce_A 272 VLPNEVARKLIERFP--KATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIV 349 (512)
T ss_dssp CCCHHHHHHHHHHCT--TCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEE
T ss_pred cCCHHHHHHHHHHCC--CCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEE
Confidence 999999999999996 489999999999987655332211 123567899999999999999999999999999999
Q ss_pred EecCCCcccccccCCchhhhhhccc-cCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcCcccce
Q 006776 450 IKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 528 (631)
Q Consensus 450 v~~~~p~~~~gy~~~~~~~~~~~~~-~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~ 528 (631)
|+| |+++.|||++++.+...|.. +.+|||+|||+|++ +||+++|+||.||+||++|++|+|.|||++|.+||+|.+
T Consensus 350 v~g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~ 426 (512)
T 3fce_A 350 IVG--PSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEG 426 (512)
T ss_dssp EES--TTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEE
T ss_pred Eec--cccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcce
Confidence 999 99999999999988887742 23579999999999 899999999999999999999999999999999999999
Q ss_pred EEEEeeecCCCCeeEEEEEEeCCCCCCc-HHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHHHHhcC
Q 006776 529 AAVVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 606 (631)
Q Consensus 529 ~~vv~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~~~~ 606 (631)
++|++++++..++.++++|++.++.... .++.++|+++|+++|+.|++|+.++++++||+|++||++|++|++.+.++
T Consensus 427 a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 427 AVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp EEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-
T ss_pred EEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhc
Confidence 9999999988889999999988765433 35678899999999999999999999999999999999999999999875
No 16
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.3e-78 Score=663.93 Aligned_cols=512 Identities=18% Similarity=0.223 Sum_probs=324.1
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
++.++|.++++ .+|+++|++..... ...+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 21 tl~~~l~~~a~-~~p~~~a~~a~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 98 (550)
T 3rix_A 21 TAGEQLHKAMK-RYALVPGTIAFTDA-HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI 98 (550)
T ss_dssp CHHHHHHHHHH-HHHTSTTCEEEEET-TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCCceEEEeeec-CCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHc
Confidence 35677888777 68999997632211 23578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcC
Q 006776 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 213 (631)
Q Consensus 134 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 213 (631)
|++++|+++.++.+++.+++++++++++|+++... ..+......+ +.++.+++++....
T Consensus 99 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~-------- 157 (550)
T 3rix_A 99 GVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL---------QKILNVQKKL----PIIQKIIIMDSKTD-------- 157 (550)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH---------HHHHHHHHHC----TTCCEEEETTCSSC--------
T ss_pred CCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHH---------HHHHHHHhhC----CCcceEEEEcCCcc--------
Confidence 99999999999999999999999999999987532 3333444444 56677766543211
Q ss_pred CCCCccchhhhcccCC------CCC-CceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHh--cCCCCCcE
Q 006776 214 QDGRDIWWQDVVPKYP------TKC-EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDV 284 (631)
Q Consensus 214 ~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~--~~~~~~d~ 284 (631)
......+.++..... ... +.....++++++|+|||||||.||||+++|++++.......... +++.++++
T Consensus 158 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~ 236 (550)
T 3rix_A 158 -YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTA 236 (550)
T ss_dssp -BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCE
T ss_pred -ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcE
Confidence 011222333322110 011 11122357899999999999999999999999665554433222 56788999
Q ss_pred EEEecccceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCce
Q 006776 285 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 364 (631)
Q Consensus 285 ~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~l 364 (631)
+++.+|++|.+|. +.++.+++.|+++++.+. +++..+++.|+++++|+++++|+++..|.+... ....++++|
T Consensus 237 ~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~l 309 (550)
T 3rix_A 237 ILSVVPFHHGFGM-FTTLGYLICGFRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL--IDKYDLSNL 309 (550)
T ss_dssp EEECSCTTSHHHH-HHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG--GGGSCCTTC
T ss_pred EEEechHHHHHHH-HHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc--ccccCcccc
Confidence 9999999999986 566788999999999864 489999999999999999999999999998754 345678999
Q ss_pred eEEEEccCCCCHhHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCCCcCCCceEEeCC-CCcccCCC
Q 006776 365 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGE 443 (631)
Q Consensus 365 r~v~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~g~~~~~g 443 (631)
|.+++|||++++++.+++.+.++. ..+++.||+||+++.++..... ...++++|+|+++++++|+|+ +|++++.|
T Consensus 310 r~i~~gG~~l~~~~~~~~~~~~~~--~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g 385 (550)
T 3rix_A 310 HEIASGGAPLSKEVGEAVAKRFHL--PGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 385 (550)
T ss_dssp CEEEECSSCCCHHHHHHHHHHTTC--SCCEEEEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCTT
T ss_pred cEEEEecCCCCHHHHHHHHHHcCC--CccccccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCCC
Confidence 999999999999999999999983 3489999999999876654432 356789999999999999994 79999999
Q ss_pred cceeEEEecCCCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcC
Q 006776 444 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSH 523 (631)
Q Consensus 444 ~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~ 523 (631)
+.|||+|+| |+++.|||++++.+...+.. +|||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.+|
T Consensus 386 ~~GEl~v~g--~~v~~GY~~~~~~t~~~~~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 386 QRGELCVRG--PMIMSGYVNNPEATNALIDK--DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQH 461 (550)
T ss_dssp CCEEEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTCCEEEC--------------------------
T ss_pred CCeEEEEeC--CCcchhhcCChhhhhhhcCC--CCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhC
Confidence 999999999 99999999999988877643 79999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhcCCCccCc-eEEECCCCCCCCCchhhHHHHHHH
Q 006776 524 PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPD-KIHWAPGLPKTRSGKIMRRILRKI 602 (631)
Q Consensus 524 ~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~-~i~~v~~lP~t~sGKi~r~~l~~~ 602 (631)
|+|.+++|++++++..++.++++|++.++...+ .++|++++++++++++.|. .|+++++||+|++||++|++|+++
T Consensus 462 p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~ 538 (550)
T 3rix_A 462 PNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT---EKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREI 538 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcceEEEEEeecCCCCceEEEEEEecCCCCCC---HHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHH
Confidence 999999999999998999999999988765443 5688999999999886655 699999999999999999999999
Q ss_pred HhcCc
Q 006776 603 ASRQL 607 (631)
Q Consensus 603 ~~~~~ 607 (631)
+.+..
T Consensus 539 ~~~~~ 543 (550)
T 3rix_A 539 LIKAK 543 (550)
T ss_dssp -----
T ss_pred HHhhc
Confidence 87653
No 17
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=4.6e-76 Score=651.89 Aligned_cols=504 Identities=21% Similarity=0.312 Sum_probs=420.0
Q ss_pred hhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHhC
Q 006776 55 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 134 (631)
Q Consensus 55 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G 134 (631)
+.++|.+++. |+++|+++. .+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus 29 l~~~~~~~a~---pd~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG 99 (617)
T 3rg2_A 29 LTDILTRHAA---SDSIAVIDG------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLG 99 (617)
T ss_dssp TTHHHHTTTT---CCSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhC---CCCeEEecC------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcC
Confidence 5678888763 999999953 5789999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcCC
Q 006776 135 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 214 (631)
Q Consensus 135 ~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 214 (631)
++++|+++.++.+++.++++++++++++++...... ............. +.+..+.......
T Consensus 100 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~---------- 161 (617)
T 3rg2_A 100 VAPVLALFSHQRSELNAYASQIEPALLIADRQHALF----SGDDFLNTFVTEH----SSIRVVQLLNDSG---------- 161 (617)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGG----SSSHHHHHHHHHS----TTCCEEEEETCCS----------
T ss_pred eEEccCCccccHHHHHHHHhhcCceEEEeccccccc----ccHHHHHHHhhcC----Cccceeeeccccc----------
Confidence 999999999999999999999999999998754311 1112222222232 4555554443221
Q ss_pred CCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEeccccee
Q 006776 215 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 294 (631)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 294 (631)
...+.+...............++++++|+|||||||.||||+++|++++.... .....+++.+++++++.+|++|.
T Consensus 162 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~-~~~~~~~~~~~~~~l~~~p~~~~ 237 (617)
T 3rg2_A 162 ---EHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVR-RSVEICQFTQQTRYLCAIPAAHN 237 (617)
T ss_dssp ---TTBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHH-HHHHHHTCCTTCEEEECSCTTSH
T ss_pred ---ccchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHH-HHHHhcCCCCcceEEEeccchhh
Confidence 11122222222222223345689999999999999999999999999655444 44456789999999999999998
Q ss_pred cchhH-HHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccCC
Q 006776 295 TGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 373 (631)
Q Consensus 295 ~g~~~-~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge~ 373 (631)
++... .++.+++.|+++++.+. +++..+++.++++++|++.++|+++..+++.........++++||.+++|||+
T Consensus 238 ~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~ 313 (617)
T 3rg2_A 238 YAMSSPGSLGVFLAGGTVVLAAD----PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGAR 313 (617)
T ss_dssp HHHHSSHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSC
T ss_pred hhhhHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCc
Confidence 87654 57899999999999765 48899999999999999999999999998753322233468999999999999
Q ss_pred CCHhHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCCCc-CCCceEEeCCCCcccCCCcceeEEEec
Q 006776 374 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCIKS 452 (631)
Q Consensus 374 l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~d~~g~~~~~g~~Gel~v~~ 452 (631)
+++++.+++.+.++ +++++.||+||++...+... ........++|.|+ ++.+++|+|++|++++.|+.|||+|+|
T Consensus 314 l~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G 389 (617)
T 3rg2_A 314 LSATLAARIPAEIG---CQLQQVFGMAEGLVNYTRLD-DSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRG 389 (617)
T ss_dssp CCHHHHHHHHHHTC---SEEEEEEEETTEEEEECCTT-SCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEEC
T ss_pred CCHHHHHHHHHHhC---CcEEEEeccCcceeecccCC-CcccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecC
Confidence 99999999999987 79999999999986544221 11112345789997 788999999999999999999999999
Q ss_pred CCCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcCcccceEEEE
Q 006776 453 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVV 532 (631)
Q Consensus 453 ~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~~~vv 532 (631)
|+++.|||++++.+...|.. +|||+|||+|++++||+++++||+||+||++|+||+|.|||++|.+||+|.+++|+
T Consensus 390 --~~v~~GY~~~p~~t~~~f~~--~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv 465 (617)
T 3rg2_A 390 --PYTFRGYYKSPQHNASAFDA--NGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALV 465 (617)
T ss_dssp --SSSCSCCTTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEE
T ss_pred --ccccchhcCChhhhhhccCC--CCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEE
Confidence 99999999999999888854 78999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHh-hcCCCccCceEEECCCCCCCCCchhhHHHHHHHHhcC
Q 006776 533 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 606 (631)
Q Consensus 533 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~-~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~~~~ 606 (631)
+.+++..++.++++|+..+... ..++++++++ .|+.|++|..++++++||+|++||++|++|++.+...
T Consensus 466 ~~~~~~~~~~~~a~vv~~~~~~-----~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 535 (617)
T 3rg2_A 466 SMEDELMGEKSCAYLVVKEPLR-----AVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535 (617)
T ss_dssp EEEETTTEEEEEEEEEESSCCC-----HHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHH
T ss_pred eccCcccCeeEEEEEEeCCCCC-----HHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcc
Confidence 9999888999999999887432 5678899998 6999999999999999999999999999999988754
No 18
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3.4e-76 Score=639.21 Aligned_cols=495 Identities=18% Similarity=0.224 Sum_probs=416.1
Q ss_pred hhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 55 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 55 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~-~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
+.++|.+++. .+|+++|+++. .+++||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||+++
T Consensus 3 l~~~l~~~a~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~ 75 (511)
T 3e7w_A 3 LLHAIQTHAE-TYPQTDAFRSQ------GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA 75 (511)
T ss_dssp HHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCCeEEEcC------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 3467788887 79999999853 5789999999999999999987 48899999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcC
Q 006776 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 213 (631)
Q Consensus 134 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 213 (631)
|++++|+++.++.+++.+++++++++++|+++........ ..+.
T Consensus 76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~------------------~~~~------------------ 119 (511)
T 3e7w_A 76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG------------------QQIQ------------------ 119 (511)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC------------------CSSC------------------
T ss_pred CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc------------------cccc------------------
Confidence 9999999999999999999999999999986543210000 0000
Q ss_pred CCCCccchhhhcccCC-CCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecccc
Q 006776 214 QDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 292 (631)
Q Consensus 214 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~ 292 (631)
...+.++..... .........++++++|+|||||||.||||+++|++++... ......+++.++|++++.+|++
T Consensus 120 ----~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~ 194 (511)
T 3e7w_A 120 ----TVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFT-DWICADFPVSGGKIFLNQAPFS 194 (511)
T ss_dssp ----EEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHH-HHHHHHSTTTTTCEEEECSCTT
T ss_pred ----eecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHH-HHHHHhcCCCccceEEEeCCcc
Confidence 011112211111 1112223567899999999999999999999999965444 4445568899999999999999
Q ss_pred eecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccC
Q 006776 293 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 372 (631)
Q Consensus 293 ~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge 372 (631)
|..+. ..++.++..|+++++.+.. ..+++..+++.++++++|++.++|++++.++.... .....++++|.+++|||
T Consensus 195 ~~~~~-~~~~~~l~~G~~~~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~~~G~ 270 (511)
T 3e7w_A 195 FDLSV-MDLYPCLQSGGTLHCVTKD-AVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG--FSQDLLPHADTFMFCGE 270 (511)
T ss_dssp STHHH-HHHHHHHHTTCEEEECCHH-HHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT--CSTTTCTTCCEEEECSS
T ss_pred HHHHH-HHHHHHHhcCCEEEEcChh-hhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc--cccccCCcccEEEEecC
Confidence 99885 5678999999999987541 11378899999999999999999999999987653 23456889999999999
Q ss_pred CCCHhHHHHHHHHhCCCCcceecccccccccceecccCCCC---CCCCCCCcCCCcCCCceEEeCCCCcccCCCcceeEE
Q 006776 373 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 449 (631)
Q Consensus 373 ~l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~---~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~Gel~ 449 (631)
++++++.+++.+.++ ++++++.||+||+++.++...... ......++|.|+++++++|+|++|++++.|+.|||+
T Consensus 271 ~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~ 348 (511)
T 3e7w_A 271 VLPVSVAKALLERFP--KAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIV 348 (511)
T ss_dssp CCCHHHHHHHHHHCT--TCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEE
T ss_pred CCCHHHHHHHHHHCC--CcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEE
Confidence 999999999999996 489999999999987655332111 123456799999999999999999999999999999
Q ss_pred EecCCCcccccccCCchhhhhhccccCCC-eEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcCcccce
Q 006776 450 IKSSWPGAFRTLYGDHERYETTYFKPFPG-YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 528 (631)
Q Consensus 450 v~~~~p~~~~gy~~~~~~~~~~~~~~~~g-~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~ 528 (631)
|+| |+++.|||++++.+...|+....+ ||+|||+|++ +||+++++||+||+||++|++|+|.|||++|.+||+|.+
T Consensus 349 v~g--~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~ 425 (511)
T 3e7w_A 349 IAG--PSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRS 425 (511)
T ss_dssp EES--TTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEE
T ss_pred Eec--CccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcce
Confidence 999 999999999999998888653333 7999999999 699999999999999999999999999999999999999
Q ss_pred EEEEeeecCCCCeeEEEEEEeCCCCCCc-HHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHHHHhcC
Q 006776 529 AAVVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 606 (631)
Q Consensus 529 ~~vv~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~~~~ 606 (631)
++|++++++..++.++++|+..++.... .++.++|+++|+++|+.|++|+.++++++||+|++||++|++|++.+..+
T Consensus 426 a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 426 AVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp EEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHH
T ss_pred EEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhh
Confidence 9999999888889999999998765433 45678999999999999999999999999999999999999999998764
No 19
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.4e-77 Score=650.23 Aligned_cols=494 Identities=23% Similarity=0.293 Sum_probs=317.0
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
++.++|++++. .+|+++|+++. .+++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 7 tl~~~l~~~a~-~~pd~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 79 (509)
T 3ivr_A 7 TLADVYRRNAA-LFPDRTAFMVD------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALI 79 (509)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-HCCCceEEEEC------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 35678888888 79999999963 578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcC
Q 006776 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 213 (631)
Q Consensus 134 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 213 (631)
|++++|+++.++.+++.+++++++++++|+++... ..+......+ +.+..++.+....
T Consensus 80 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~--------- 137 (509)
T 3ivr_A 80 GAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR---------DIVAGVLPSL----GGVKKAYAIGDGS--------- 137 (509)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTH---------HHHHHHGGGC----SSCCEEEESSCCC---------
T ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEECcchh---------hhHHhhhccc----CCceEEEEcCCCC---------
Confidence 99999999999999999999999999999987542 2222222222 5556665544311
Q ss_pred CCCCccchhhhcc-cCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecccc
Q 006776 214 QDGRDIWWQDVVP-KYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 292 (631)
Q Consensus 214 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~ 292 (631)
..+.++.. ......+.....++++++|+|||||||.||||+++|++++... ......+++.++|++++.+|++
T Consensus 138 -----~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~ 211 (509)
T 3ivr_A 138 -----GPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQ-SSLVDAWRLTEADVNLGMLPLF 211 (509)
T ss_dssp -----SSCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHH-HHHHHHTTCCTTCEEEECSCTT
T ss_pred -----cChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHH-HHHHHhhCCCCCcEEEEeCCCc
Confidence 11112211 1111222334678999999999999999999999999965444 4445578999999999999999
Q ss_pred eecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccC
Q 006776 293 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 372 (631)
Q Consensus 293 ~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge 372 (631)
|.+|....+ .+++.|++.++... +++..+++.|+++++|++.++|+++..|++... ..+++++|.++.+|+
T Consensus 212 ~~~g~~~~~-~~~~~~g~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----~~~l~~lr~~~~~g~ 282 (509)
T 3ivr_A 212 HVTGLGLML-TLQQAGGASVIAAK----FDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA----PAQLASLRAVTGLDT 282 (509)
T ss_dssp SHHHHHHHH-HHHHHTCEEEECSS----CCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC----GGGGTTCCEEEEECC
T ss_pred chhHHHHHH-HHHHhCCcEEEecc----cCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc----ccchhhhheecccCC
Confidence 999875544 44444555555432 589999999999999999999999999998752 346789999999998
Q ss_pred CCCHhHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCCCcCCCceEEeCCCCcccCCCcceeEEEec
Q 006776 373 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 452 (631)
Q Consensus 373 ~l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~Gel~v~~ 452 (631)
+ ++.+.+.+.++ ++++++.||+||++++.+..... .....+|+|+++++++|+|++|++++.|+.|||+|+|
T Consensus 283 ~---~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g 354 (509)
T 3ivr_A 283 P---ETIERFEATCP--NATFWATFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRG 354 (509)
T ss_dssp H---HHHHHHHHHCT--TCEEEEEEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEES
T ss_pred h---HHHHHHHHhcC--CCeEEcccCccccccccccCccc---cCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEec
Confidence 7 88888998885 48999999999999766544332 2345599999999999999999999999999999999
Q ss_pred CCCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeec--CCeEecCceeechHHHHHHHhcCcccceEE
Q 006776 453 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRV--DDVINVSGHRIGTAEVESALVSHPQCAEAA 530 (631)
Q Consensus 453 ~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~--dd~i~~~G~~i~~~eIE~~l~~~~~V~~~~ 530 (631)
|+++.|||++++.+...|. +|||+|||+|++|+||+++++||. ||+||++|++|+|.|||++|.+||+|.+++
T Consensus 355 --~~~~~gY~~~~~~t~~~f~---~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~ 429 (509)
T 3ivr_A 355 --PTVFKGYWNNAAATQHAFR---NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAV 429 (509)
T ss_dssp --TTSCCEETTCHHHHHHHTG---GGSEEEEEEEEECTTSCEEEEEEC--------------------------------
T ss_pred --CCccccccCCHHHhHHHhh---cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEE
Confidence 9999999999998888774 789999999999999999999999 999999999999999999999999999999
Q ss_pred EEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHHHHhcCc
Q 006776 531 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 607 (631)
Q Consensus 531 vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~~~~~ 607 (631)
|++++++..++.++++|++.++...+ .++|+++|+++|+.|++|+.|+++++||+|++||++|++||+.+.+..
T Consensus 430 vv~~~~~~~~~~~~a~v~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~ 503 (509)
T 3ivr_A 430 VIGVPDPQWSEAIKAVCVCKPGESIA---ADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEG 503 (509)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEeccccccCcEEEEEEEeCCCCCCC---HHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhcc
Confidence 99999998899999999988765443 578999999999999999999999999999999999999999987753
No 20
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.4e-76 Score=648.06 Aligned_cols=484 Identities=21% Similarity=0.240 Sum_probs=399.2
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
++.++|.+++. .+|+++|+++. .+++||+||.+++.++|++|.++|+++||+|+++++|++++++++|||+++
T Consensus 40 ~l~~~l~~~a~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 112 (563)
T 1amu_A 40 TIHQLFEEQVS-KRPNNVAIVCE------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKA 112 (563)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHH-HCCCCeEEEeC------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 46788888888 79999999863 478999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcC
Q 006776 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 213 (631)
Q Consensus 134 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 213 (631)
|++++|+++.++.+++.+++++++++++|+++.... ....+ .....+..+....
T Consensus 113 Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~-------------~~~~~----~~~~~~~~~~~~~--------- 166 (563)
T 1amu_A 113 GGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH-------------LIHNI----QFNGQVEIFEEDT--------- 166 (563)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHH-------------HHTTS----CCCSEEEECCCST---------
T ss_pred CCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhh-------------hhhhc----cccCceeeecchh---------
Confidence 999999999999999999999999999999764321 11111 1111222221100
Q ss_pred CCCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecccce
Q 006776 214 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 293 (631)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 293 (631)
+. . ...........++++++|+|||||||.||||+++|++++ +........+++.++|++++.+|++|
T Consensus 167 -------~~---~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~-~~~~~~~~~~~~~~~d~~l~~~p~~~ 234 (563)
T 1amu_A 167 -------IK---I-REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGIS-NLKVFFENSLNVTEKDRIGQFASISF 234 (563)
T ss_dssp -------TT---T-SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHH-HHHHHHHHTSCCCTTCEEEECSCTTS
T ss_pred -------hc---c-ccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHH-HHHHHHHHhcCCCCCCEEEEeCCccH
Confidence 00 0 000011123457899999999999999999999999954 44444455688999999999999999
Q ss_pred ecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccCC
Q 006776 294 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 373 (631)
Q Consensus 294 ~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge~ 373 (631)
..+. +.++.+++.|+++++.+... ..++..+++.++++++|++.++|+++..|... .++++|.+++||++
T Consensus 235 ~~~~-~~~~~~l~~G~~~v~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------~~~~lr~~~~gG~~ 304 (563)
T 1amu_A 235 DASV-WEMFMALLTGASLYIILKDT-INDFVKFEQYINQKEITVITLPPTYVVHLDPE--------RILSIQTLITAGSA 304 (563)
T ss_dssp THHH-HHHHHHHTTTCEEEECCHHH-HTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------TCCSCSEEEEESSC
T ss_pred HHHH-HHHHHHHHCCCEEEEcChHh-hcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------ccccccEEEEEEec
Confidence 9886 56788999999999975421 13788999999999999999999998766432 45789999999999
Q ss_pred CCHhHHHHHHHHhCCCCcceecccccccccceecccCCCC-CCCCCCCcCCCcCCCceEEeCCCCcccCCCcceeEEEec
Q 006776 374 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 452 (631)
Q Consensus 374 l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~Gel~v~~ 452 (631)
+++++.+++.+. +++++.||+||++.+++...... ...+..++|+|+++++++|+|++|++++.|+.|||+|+|
T Consensus 305 l~~~~~~~~~~~-----~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g 379 (563)
T 1amu_A 305 TSPSLVNKWKEK-----VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGG 379 (563)
T ss_dssp CCHHHHHHHTTT-----SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEE
T ss_pred CCHHHHHHHHhC-----CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEec
Confidence 999999888653 68999999999987654432221 123567899999999999999999999999999999999
Q ss_pred CCCcccccccCCchhhhhhccc----cCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcCcccce
Q 006776 453 SWPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 528 (631)
Q Consensus 453 ~~p~~~~gy~~~~~~~~~~~~~----~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~ 528 (631)
|+++.|||++++.+...|.. ..+|||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+
T Consensus 380 --~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~ 457 (563)
T 1amu_A 380 --EGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISE 457 (563)
T ss_dssp --TTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEE
T ss_pred --hhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcce
Confidence 99999999999988887753 234699999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHHHHh
Q 006776 529 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 604 (631)
Q Consensus 529 ~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~~ 604 (631)
++|++.+++..++.++++|+..... + .++|+++|+++|+.|++|+.|+++++||+|++||++|++|++...
T Consensus 458 a~Vv~~~~~~~~~~~~a~vv~~~~~--~---~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 528 (563)
T 1amu_A 458 TAVSVHKDHQEQPYLCAYFVSEKHI--P---LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDL 528 (563)
T ss_dssp EEEEEEECTTSCEEEEEEEEESSCC--C---HHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCC
T ss_pred EEEEEeecCCCCeEEEEEEEeCCCC--C---HHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCccc
Confidence 9999999988899999999986533 3 568999999999999999999999999999999999999987543
No 21
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.6e-77 Score=657.68 Aligned_cols=485 Identities=22% Similarity=0.282 Sum_probs=317.3
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
+++++|++++. .+|+++|+++. .+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 76 ~l~~~l~~~a~-~~pd~~A~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 148 (570)
T 4gr5_A 76 CVHELFEAQAA-RAPDAVALLHE------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKA 148 (570)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-HCCCCeEEECC------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 57789999988 79999999963 478999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcC
Q 006776 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 213 (631)
Q Consensus 134 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 213 (631)
|++++|++|.++.+++.+++++++++++|+++...... .....+++.+...
T Consensus 149 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------------------~~~~~~~~~~~~~--------- 199 (570)
T 4gr5_A 149 GGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------------------TGTTTLYVEDEAA--------- 199 (570)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------------------CSSEEEECCC------------
T ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------------------cCCcceeeecccc---------
Confidence 99999999999999999999999999999987542210 1111111111000
Q ss_pred CCCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecccce
Q 006776 214 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 293 (631)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 293 (631)
.............++++++|+|||||||.||||+++|++++..... ...+++.++|++++.+|++|
T Consensus 200 ------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~--~~~~~~~~~d~~l~~~p~~~ 265 (570)
T 4gr5_A 200 ------------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG--QDYAGFGPDEVFLQCSPVSW 265 (570)
T ss_dssp ----------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS--CCSSCCSTTCEEEECSCTTS
T ss_pred ------------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh--hhhcCCCCCCEEEEecCccH
Confidence 0001111122356899999999999999999999999996433322 23467889999999999999
Q ss_pred ecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccCC
Q 006776 294 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 373 (631)
Q Consensus 294 ~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge~ 373 (631)
..+. +.++.+++.|+++++.+.. .+++..+++.|+++++|++.++|+++..|.+... .++++||.+++|||+
T Consensus 266 ~~~~-~~~~~~l~~G~~~v~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-----~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 266 DAFG-LELFGALLFGARCVLQSGQ--NPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP-----EAFEGVRYAITGGEP 337 (570)
T ss_dssp STHH-HHHHHHHTTTCEEEECSSS--SCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSC
T ss_pred HHHH-HHHHHHHhcCCEEEEcCCc--cCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch-----hhCCCceEEEEeccc
Confidence 7654 5678899999999997643 2589999999999999999999999999997643 247899999999999
Q ss_pred CCHhHHHHHHHHhCCCCcceecccccccccceecccCC--CCCCCCCCCcCCCcCCCceEEeCCCCcccCCCcceeEEEe
Q 006776 374 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP--GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 451 (631)
Q Consensus 374 l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~--~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~Gel~v~ 451 (631)
+++++.+.+.+.++ ++++++.||+||++++.+.... ........++|+|+++++++|+|++|++++.|+.|||+|+
T Consensus 338 l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~ 415 (570)
T 4gr5_A 338 ASVPHVAKARRDHP--ALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVA 415 (570)
T ss_dssp CCHHHHHHHHHHCT--TCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEE
T ss_pred CCHHHHHHHHHhCC--CcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEe
Confidence 99999999999886 4899999999999876543321 1122345679999999999999999999999999999999
Q ss_pred cCCCcccccccCCchhhhhhcccc------CCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcCcc
Q 006776 452 SSWPGAFRTLYGDHERYETTYFKP------FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQ 525 (631)
Q Consensus 452 ~~~p~~~~gy~~~~~~~~~~~~~~------~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~ 525 (631)
| |+++.|||++++.+...|... .+|||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+
T Consensus 416 g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~ 493 (570)
T 4gr5_A 416 G--AGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPA 493 (570)
T ss_dssp E--TTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC--------------------------
T ss_pred e--cccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCC
Confidence 9 999999999999888887532 24799999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHHH
Q 006776 526 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 602 (631)
Q Consensus 526 V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~ 602 (631)
|.+++|++.+++..++.++++|+..++.. ....++|+++|+++|+.|++|+.++++++||+|++||++|++|++.
T Consensus 494 V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 494 VRQAAVLAQDSRLGDKQLVAYVVAERADA--PPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cceEEEEEeeCCCCCeEEEEEEEecCCCC--CcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 99999999999888899999998865432 1226789999999999999999999999999999999999999874
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=4.6e-76 Score=640.37 Aligned_cols=500 Identities=18% Similarity=0.223 Sum_probs=403.4
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
.+.++|++++. .+|+++|+++. ++++||+||.+++.++|++|.++|+++||+|+++++|++++++++|||+++
T Consensus 5 ~l~~~l~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (521)
T 3l8c_A 5 DMIDSIEQFAQ-TQADFPVYDCL------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKS 77 (521)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HCCCCcceecC------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 35677888887 79999999853 578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcC
Q 006776 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 213 (631)
Q Consensus 134 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 213 (631)
|++++|+++.++.+++.+++++++++++|+++.......... ++.+..
T Consensus 78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~---------------------~~~~~~----------- 125 (521)
T 3l8c_A 78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGIS---------------------LVSLSE----------- 125 (521)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTSE---------------------EEEHHH-----------
T ss_pred CCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccccCc---------------------ccchhh-----------
Confidence 999999999999999999999999999999876432211110 000000
Q ss_pred CCCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHH-HhcCCCCCcEEEEecccc
Q 006776 214 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK-YAFDYKPSDVYWCTADCG 292 (631)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~-~~~~~~~~d~~~~~~~~~ 292 (631)
+.................++++++|+|||||||.||||+++|++++........ ..+++.+++++++..|++
T Consensus 126 -------~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (521)
T 3l8c_A 126 -------IESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYS 198 (521)
T ss_dssp -------HHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTT
T ss_pred -------hhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCcc
Confidence 000000001111122356899999999999999999999999996654433322 126778899999999999
Q ss_pred eecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccC
Q 006776 293 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 372 (631)
Q Consensus 293 ~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge 372 (631)
|..+. ..++.++..|+++++.+.. ...++..+++.+.++++|++.++|+++..+..... ....+++++|.+++||+
T Consensus 199 ~~~~~-~~~~~~l~~G~~~~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gG~ 274 (521)
T 3l8c_A 199 FDLSV-MYWAPTLALGGTLFALPKE-LVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD--FCQAKMPALTHFYFDGE 274 (521)
T ss_dssp SGGGH-HHHHHHHHTTCEEEECCGG-GTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT--CSTTTCTTCCEEEECSS
T ss_pred HHHHH-HHHHHHHhcCCEEEEcCHH-HhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc--cccccCccceEEEEecc
Confidence 98875 5678889999999987642 22488999999999999999999999999887643 23456899999999999
Q ss_pred CCCHhHHHHHHHHhCCCCcceecccccccccceecccCCCC---CCCCCCCcCCCcCCCceEEeCCCCcccCCCcceeEE
Q 006776 373 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 449 (631)
Q Consensus 373 ~l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~---~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~Gel~ 449 (631)
++++++.+++.+.++ ++++++.||+||+++.++...... .....+++|+|+++++++|+|++|++++.|+.|||+
T Consensus 275 ~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~ 352 (521)
T 3l8c_A 275 ELTVSTARKLFERFP--SAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEII 352 (521)
T ss_dssp CCCHHHHHHHHHHCT--TCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEE
T ss_pred cCCHHHHHHHHHHCC--CceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEE
Confidence 999999999999986 489999999999987654322111 123456899999999999999999999999999999
Q ss_pred EecCCCcccccccCCchhhhhhccc-cCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcCcccce
Q 006776 450 IKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 528 (631)
Q Consensus 450 v~~~~p~~~~gy~~~~~~~~~~~~~-~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~ 528 (631)
|+| |+++.|||++++.+...|.. +.+|||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.+||+|.+
T Consensus 353 v~g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~ 430 (521)
T 3l8c_A 353 VTG--PAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVAS 430 (521)
T ss_dssp EES--TTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEE
T ss_pred ecc--cccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcce
Confidence 999 99999999999999888753 335799999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecCC-CCeeEEEEEEeCCCCCC----cHHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHHHH
Q 006776 529 AAVVGVEHEV-KGQGIYAFVTLVEGVPY----SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 603 (631)
Q Consensus 529 ~~vv~~~~~~-~~~~~~~~v~~~~~~~~----~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~ 603 (631)
++|++.+++. .++.++++|+++++... ..++.++|+++|+++|+.|++|+.|+++++||+|++||++|++|++.+
T Consensus 431 a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~ 510 (521)
T 3l8c_A 431 AVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEV 510 (521)
T ss_dssp EEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHT
T ss_pred EEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhh
Confidence 9999987654 46889999999876432 134578899999999999999999999999999999999999999998
Q ss_pred hcCc
Q 006776 604 SRQL 607 (631)
Q Consensus 604 ~~~~ 607 (631)
.++.
T Consensus 511 ~~~~ 514 (521)
T 3l8c_A 511 NNRE 514 (521)
T ss_dssp C---
T ss_pred hcCC
Confidence 7653
No 23
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.8e-75 Score=644.44 Aligned_cols=480 Identities=18% Similarity=0.198 Sum_probs=394.1
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
++.++|++++. .+|+++|+++. .+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 28 tl~~~~~~~a~-~~Pd~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailka 100 (620)
T 4dg8_A 28 TVVARFSEMAA-LHPHREAIRDR------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLS 100 (620)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-hCCCCeEEEcC------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 46788888888 79999999963 578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcC
Q 006776 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 213 (631)
Q Consensus 134 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 213 (631)
|++++|++|.++.+++.+++++++++++++++...... ..... +.+..
T Consensus 101 Ga~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------------------~~~~~-~~~~~----------- 148 (620)
T 4dg8_A 101 GHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------------------NGLPC-VPVRH----------- 148 (620)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------------------TTSCE-EEGGG-----------
T ss_pred CCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------------------cCCce-eeecc-----------
Confidence 99999999999999999999999999999765432110 01110 00000
Q ss_pred CCCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecccce
Q 006776 214 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 293 (631)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 293 (631)
. .............++++++|+|||||||.||||+++|+++..... . ...+++.+++++++.+|++|
T Consensus 149 ----------~-~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~-~-~~~~~~~~~d~~l~~~p~~~ 215 (620)
T 4dg8_A 149 ----------L-PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCL-G-QSFLAFAPQMRFLVNSPLSF 215 (620)
T ss_dssp ----------C-CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHS-S-CGGGTTCTTCEEEECSCTTS
T ss_pred ----------C-CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHH-H-HHhhCCCCCCEEEEECccCH
Confidence 0 000111112234689999999999999999999999999543332 2 33578899999999999999
Q ss_pred ecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccCC
Q 006776 294 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 373 (631)
Q Consensus 294 ~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge~ 373 (631)
..+. +.++.+|+.|+++++.+.. .+++..+++.|+++++|++.++|++++.|.+... .++++||.+++|||+
T Consensus 216 ~~~~-~~~~~~l~~G~~~v~~~~~--~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 216 DAAT-LEIWGALLNGGCCVLNDLG--PLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-----DCLGGLRQLLTGGDI 287 (620)
T ss_dssp THHH-HHHHHHHTTTCEEEECCSS--SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSC
T ss_pred HHHH-HHHHHHHhcCCEEEeCccc--cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-----hhCCCccEEEEEeCc
Confidence 9886 5689999999999997432 2589999999999999999999999999987532 357899999999999
Q ss_pred CCHhHHHHHHHHhCCCCcceecccccccccceecccCC--CCCCCCCCCcCCCcCCCceEEeCCCCcc-cCCCcceeEEE
Q 006776 374 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP--GAWPQKPGSATFPFFGVQPVIVDEKGVE-IEGECSGYLCI 450 (631)
Q Consensus 374 l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~--~~~~~~~~~~G~p~~~~~~~i~d~~g~~-~~~g~~Gel~v 450 (631)
++++..+.+.+.++ +++++|.||+||++.+.+.... ........++|+|+++++++|+|+++++ ++.|+.|||+|
T Consensus 288 l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i 365 (620)
T 4dg8_A 288 LSVPHVRRALLRHP--RLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVA 365 (620)
T ss_dssp CCHHHHHHHHHHCT--TCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEE
T ss_pred CCHHHHHHHHHhCC--CeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEE
Confidence 99999988888875 4899999999999876543221 1123456789999999999999999988 78899999999
Q ss_pred ecCCCcccccccCCchhhhhhccccC-C----CeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcCcc
Q 006776 451 KSSWPGAFRTLYGDHERYETTYFKPF-P----GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQ 525 (631)
Q Consensus 451 ~~~~p~~~~gy~~~~~~~~~~~~~~~-~----g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~ 525 (631)
+| |+++.|||++++.+...|.... + +||+|||+|++++||+++++||.||+||++|+||+|.|||++|.+||+
T Consensus 366 ~G--~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~ 443 (620)
T 4dg8_A 366 FG--AGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPG 443 (620)
T ss_dssp EE--TTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTT
T ss_pred ec--cccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCC
Confidence 99 9999999999999988876421 1 699999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHHHHhc
Q 006776 526 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 605 (631)
Q Consensus 526 V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~~~ 605 (631)
|.+|+|++.+++..++ ++++++.... .+.++++++|+.|++|..++++++||+|++||++|++|++.+..
T Consensus 444 V~~a~Vv~~~~~~~~~-lv~~~~~~~~---------~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 444 ILDCALLVRERNGVKQ-LLCAWTGKAD---------ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp EEEEEEEEEEETTEEE-EEEEEEECTT---------CCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred ccEEEEEEEeCCCceE-EEEEEecChH---------HHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence 9999999998874444 4444443322 23445778899999999999999999999999999999998876
Q ss_pred Cc
Q 006776 606 QL 607 (631)
Q Consensus 606 ~~ 607 (631)
..
T Consensus 514 ~~ 515 (620)
T 4dg8_A 514 PL 515 (620)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 24
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.3e-75 Score=632.62 Aligned_cols=477 Identities=22% Similarity=0.321 Sum_probs=382.9
Q ss_pred hhHhhhhhhhhhccCCCC-eeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHH
Q 006776 52 TNICYNCLDRNIEAGLGD-KVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 130 (631)
Q Consensus 52 ~n~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~ 130 (631)
+..+.++|.+++. .+|+ ++|+++. .+++||+||.+++.++|.+|. .||+|+++++|++++++++|||
T Consensus 21 ~~tl~~~l~~~a~-~~p~d~~Al~~~------~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~ 88 (505)
T 3nyq_A 21 MSSLFPALSPAPT-GAPADRPALRFG------ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAA 88 (505)
T ss_dssp ---CCTTTSSCCC-SGGGGSEEEEET------TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHH
T ss_pred cchhHHHHHHHHH-hCCCCCeEEEEC------CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHH
Confidence 4456677888877 5776 9999963 579999999999999998885 3889999999999999999999
Q ss_pred HHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCcccccc
Q 006776 131 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 210 (631)
Q Consensus 131 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 210 (631)
+++|++++|++|.++.+++.+++++++++++|+++..... ... ..+..+. +....
T Consensus 89 ~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~--------------~~~----~~~~~~~-~~~~~------ 143 (505)
T 3nyq_A 89 LLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP--------------PAL----GALERVD-VDVRA------ 143 (505)
T ss_dssp HHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC--------------GGG----TTSEEEE-CCTTC------
T ss_pred HHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc--------------hhh----ccccccc-ccccc------
Confidence 9999999999999999999999999999999998642110 000 1222111 11000
Q ss_pred CcCCCCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecc
Q 006776 211 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 290 (631)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 290 (631)
....+.....++++++|+|||||||.||||+++|++++... ......+++.++|++++.+|
T Consensus 144 ------------------~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~p 204 (505)
T 3nyq_A 144 ------------------RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTL-DALADAWQWTGEDVLVQGLP 204 (505)
T ss_dssp ------------------CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-HHHHHHHTCCTTCEEEECCC
T ss_pred ------------------ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHH-HHHHHHhCCCCCcEEEEecc
Confidence 00111223567899999999999999999999999955444 44455678999999999999
Q ss_pred cceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCc-cccccCCCceeEEEE
Q 006776 291 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE-YVTRYSRKSLRVLGS 369 (631)
Q Consensus 291 ~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~-~~~~~~l~~lr~v~~ 369 (631)
++|..|....++.++..|+++++.+. +++..+++.+ ++++|+++++|+++..|.+.... ......++++|.+++
T Consensus 205 ~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~ 279 (505)
T 3nyq_A 205 LFHVHGLVLGILGPLRRGGSVRHLGR----FSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVS 279 (505)
T ss_dssp TTSHHHHTTTTHHHHHHTCEEEECSS----CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCC----CChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEE
Confidence 99999987788999999999999754 4888999999 88999999999999999874321 112335788999999
Q ss_pred ccCCCCHhHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCCCcCCCceEEeCCCCcccCC---Ccce
Q 006776 370 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEG---ECSG 446 (631)
Q Consensus 370 ~Ge~l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~---g~~G 446 (631)
||+++++++.+++.+.++ +++++.||+||++..+...... ....+++|+|+++++++|+|++|++++. |+.|
T Consensus 280 gg~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~G 354 (505)
T 3nyq_A 280 GSAALPVHDHERIAAATG---RRVIERYGMTETLMNTSVRADG--EPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVG 354 (505)
T ss_dssp CSSCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEECCTTS--CCCTTCCCEECTTCEEEEC-----CCCCCCSCCCE
T ss_pred CCCCCCHHHHHHHHHhcC---CeeecccchhhcccccccCCCC--CCCCCCcccCCCCCEEEEECCCCCCcccCCCCceE
Confidence 999999999999999987 7899999999998765543322 3567899999999999999999998875 7899
Q ss_pred eEEEecCCCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeec-CCeEecCceeechHHHHHHHhcCcc
Q 006776 447 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRV-DDVINVSGHRIGTAEVESALVSHPQ 525 (631)
Q Consensus 447 el~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~-dd~i~~~G~~i~~~eIE~~l~~~~~ 525 (631)
||+|+| |+++.|||++++.+...|.. +|||+|||+|++|+||+++++||+ ||+||++|++|+|.|||++|.+||+
T Consensus 355 El~v~g--~~v~~GY~~~~~~t~~~f~~--~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~ 430 (505)
T 3nyq_A 355 EIQVRG--PNLFTEYLNRPDATAAAFTE--DGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPE 430 (505)
T ss_dssp EEEEES--TTSCCEETTCHHHHHHTBCT--TSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTT
T ss_pred EEEEec--CchhhhhCCChhHhhhhhcC--CCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcC
Confidence 999999 99999999999999888764 789999999999999999999998 6999999999999999999999999
Q ss_pred cceEEEEeeecCCCCeeEEEEEEeCCCC-CCcHHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHH
Q 006776 526 CAEAAVVGVEHEVKGQGIYAFVTLVEGV-PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 601 (631)
Q Consensus 526 V~~~~vv~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~ 601 (631)
|.+++|++.+++..++.++++|++.++. ..+ .++|+++|+++|+.|++|+.|+++++||+|++||++|++|++
T Consensus 431 V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 431 VREAAVTGEPDPDLGERIVAWIVPADPAAPPA---LGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEESSTTSCCC---HHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred ccEEEEEeeECCCCCcEEEEEEEECCCCCCCC---HHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 9999999999999999999999987633 333 678999999999999999999999999999999999999986
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.3e-75 Score=679.35 Aligned_cols=513 Identities=22% Similarity=0.320 Sum_probs=335.9
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
++.++|.+++. .+|+++|+++. ...+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 62 tl~~~l~~~a~-~~pd~~Al~~~----~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~ 136 (979)
T 3tsy_A 62 SLHDYIFQNIS-EFATKPCLING----PTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFR 136 (979)
T ss_dssp CHHHHHTTTGG-GTTTSEEEEET----TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCCeEEEEC----CCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHc
Confidence 46788888888 79999999964 23578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcC
Q 006776 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 213 (631)
Q Consensus 134 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 213 (631)
|++++|++|.++.+++.+++++++++++|+++...... ...... ..+ .++.++.... ...
T Consensus 137 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~---------~~~~~~-----~~~-~~~~~~~~~~-----~~~ 196 (979)
T 3tsy_A 137 GATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKI---------KPLQND-----DGV-VIVCIDDNES-----VPI 196 (979)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTS---------HHHHHT-----SCC-EEEECCCCTT-----SCC
T ss_pred CCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHH---------HHHhhc-----CCc-eEEEeCCccc-----ccC
Confidence 99999999999999999999999999999987654321 111111 122 2333332110 000
Q ss_pred CCCCccchhhhcccCCC---CCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHH---HhcCCCCCcEEEE
Q 006776 214 QDGRDIWWQDVVPKYPT---KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWC 287 (631)
Q Consensus 214 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~---~~~~~~~~d~~~~ 287 (631)
......|.++...... ..+.....++++++|+|||||||.||||+++|++++........ ..+++.++|++++
T Consensus 197 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~ 275 (979)
T 3tsy_A 197 -PEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILC 275 (979)
T ss_dssp -CTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEE
T ss_pred -CcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEE
Confidence 1122334444332211 12233467899999999999999999999999997665544322 1356788999999
Q ss_pred ecccceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEE
Q 006776 288 TADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 367 (631)
Q Consensus 288 ~~~~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v 367 (631)
.+|++|.++....++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|.+... ....++++||.+
T Consensus 276 ~~p~~h~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~~ 349 (979)
T 3tsy_A 276 VLPMFHIYALNSIMLCGLRVGAAILIMPK----FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE--TEKYDLSSIRVV 349 (979)
T ss_dssp CSCSSSHHHHHHTHHHHHHHTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG--GGTSCCTTCCEE
T ss_pred ECchHHHHHHHHHHHHHHhcCcEEEEeCC----CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc--ccCCCccceEEE
Confidence 99999999987778899999999999764 488999999999999999999999999998753 345578999999
Q ss_pred EEccCCCCHhHHHHHHHHhCCCCcceecccccccccceecccC---CCCCCCCCCCcCCCcCCCceEEeCC-CCcccCCC
Q 006776 368 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL---PGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGE 443 (631)
Q Consensus 368 ~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~---~~~~~~~~~~~G~p~~~~~~~i~d~-~g~~~~~g 443 (631)
++||+++++++.+++.+.++ ++++++.||+||++.+++... ........+++|+|+++++++|+|+ +|++++.|
T Consensus 350 ~~gg~~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g 427 (979)
T 3tsy_A 350 KSGAAPLGKELEDAVNAKFP--NAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRN 427 (979)
T ss_dssp EESSCCCCSSHHHHHHHHCT--TCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTT
T ss_pred EEcCCCCCHHHHHHHHHHCC--CCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCC
Confidence 99999999999999999986 489999999999997654431 1223456789999999999999995 69999999
Q ss_pred cceeEEEecCCCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcC
Q 006776 444 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSH 523 (631)
Q Consensus 444 ~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~ 523 (631)
+.|||+|+| |+++.|||++++.+...|.. +|||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+|
T Consensus 428 ~~GEl~i~g--~~v~~GY~~~p~~t~~~f~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~ 503 (979)
T 3tsy_A 428 QPGEICIRG--HQIMKGYLNNPAATAETIDK--DGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGH 503 (979)
T ss_dssp CCEEEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEESCC---------------------
T ss_pred CccEEEEEC--CCccccccCChhhhhhhccC--CCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhC
Confidence 999999999 99999999999998887754 78999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHHHH
Q 006776 524 PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 603 (631)
Q Consensus 524 ~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~ 603 (631)
|+|.+++|++++++..++.++++|+..++...+ .++|+++|+++|+.|++|+.++++++||+|++||++|++|++.+
T Consensus 504 p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~ 580 (979)
T 3tsy_A 504 PDITDVAVVAMKEEAAGEVPVAFVVKSKDSELS---EDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKL 580 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcceEEEEEecccCCCcEEEEEEEECCCCCCC---HHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHH
Confidence 999999999999988899999999987665443 56899999999999999999999999999999999999999998
Q ss_pred hcCc
Q 006776 604 SRQL 607 (631)
Q Consensus 604 ~~~~ 607 (631)
.+..
T Consensus 581 ~~~~ 584 (979)
T 3tsy_A 581 ANGL 584 (979)
T ss_dssp ----
T ss_pred Hhhc
Confidence 7653
No 26
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.1e-74 Score=624.29 Aligned_cols=495 Identities=19% Similarity=0.237 Sum_probs=379.7
Q ss_pred hhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHhC
Q 006776 55 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 134 (631)
Q Consensus 55 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G 134 (631)
+.++|.+++. .+|+++|+++. .+++||+||.+++.++|++|++. +||+|+++++|++++++++|||+++|
T Consensus 3 l~~~l~~~a~-~~pd~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~G 72 (501)
T 3ipl_A 3 LDFWLYKQAQ-QNGHHIAITDG------QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLAN 72 (501)
T ss_dssp CCCHHHHHHH-HHTTSEEEECS------SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-hcCCceEEEeC------CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 3457777887 79999999853 47899999999999999999987 89999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcCC
Q 006776 135 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 214 (631)
Q Consensus 135 ~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 214 (631)
++++|+++.++.+++.+++++++++++|+++............ ..+..+.......... .....
T Consensus 73 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~~~ 136 (501)
T 3ipl_A 73 IEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL--------------DDIEFAGRDITTNGLL--DNTMG 136 (501)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET--------------TC---------------------
T ss_pred CEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc--------------ccceeeeeeccccccc--ccccc
Confidence 9999999999999999999999999999987654332111100 0000000000000000 00000
Q ss_pred CCCccchhhhcccCCC-CCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecccce
Q 006776 215 DGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 293 (631)
Q Consensus 215 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 293 (631)
................ ........++++++|+|||||||.||||+++|++++.... .....+++.++|++++.+|++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~-~~~~~~~~~~~d~~l~~~p~~~ 215 (501)
T 3ipl_A 137 IQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAI-GCKESLGFDRDTNWLSVLPIYH 215 (501)
T ss_dssp -------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHH-HHHHHTCCCTTCEEEECSCTTS
T ss_pred cccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHH-HHHHhhCCCccCEEEEeCcHHH
Confidence 0000000011100000 0112235689999999999999999999999999655444 4455689999999999999999
Q ss_pred ecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccCC
Q 006776 294 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 373 (631)
Q Consensus 294 ~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge~ 373 (631)
.+|.. .++.+++.|+++++.+. ++++.+++.|+++++|++.++|++++.|.+..... ..+||.+++|||+
T Consensus 216 ~~g~~-~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 216 ISGLS-VLLRAVIEGFTVRIVDK----FNAEQILTMIKNERITHISLVPQTLNWLMQQGLHE-----PYNLQKILLGGAK 285 (501)
T ss_dssp HHHHH-HHHHHHHHTCEEEECSS----CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCS-----CTTCCEEEECSSC
T ss_pred HHHHH-HHHHHHHcCceEEeCCC----CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCC-----cCcccEEEEeCCC
Confidence 99875 47889999999999864 48999999999999999999999999999875421 1389999999999
Q ss_pred CCHhHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCCCcCCCceEEeCCCCcccCCCcceeEEEecC
Q 006776 374 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 453 (631)
Q Consensus 374 l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~Gel~v~~~ 453 (631)
+++++.+++.+ ++ +++++.||+||+++.++...+......++++|.|+++++++|+|++ .|+.|||+|+|
T Consensus 286 l~~~~~~~~~~-~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~GEl~v~g- 355 (501)
T 3ipl_A 286 LSATMIETALQ-YN---LPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEGHGELMIKG- 355 (501)
T ss_dssp CCHHHHHHHHH-TT---CCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSCCEEEEEES-
T ss_pred CCHHHHHHHHH-hC---CCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCCccEEEEec-
Confidence 99999999887 44 8899999999998765544332223467889999999999999986 45679999999
Q ss_pred CCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcCcccceEEEEe
Q 006776 454 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG 533 (631)
Q Consensus 454 ~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~~~vv~ 533 (631)
|+++.|||++++.+.. + .+|||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++
T Consensus 356 -~~~~~gY~~~~~~t~~-~---~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~ 430 (501)
T 3ipl_A 356 -ANVMNGYLYPTDLTGT-F---ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVG 430 (501)
T ss_dssp -TTSCSCCSBSTTCCCS-E---ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred -cchhhhhCcChhhcch-h---cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence 9999999999987765 3 2799999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHHHHhcC
Q 006776 534 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 606 (631)
Q Consensus 534 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~~~~ 606 (631)
.+++..++.++++|+..... + .++|+++|+++|+.|++|+.|+++++||+|++||++|++||+...++
T Consensus 431 ~~~~~~g~~~~a~v~~~~~~--~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 431 HPDDTWGQVPKLYFVSESDI--S---KAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEETTTEEEEEEEEEESSCC--C---HHHHHHHHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred EecccCCceEEEEEEeCCCC--C---HHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 99998899999999875443 3 67899999999999999999999999999999999999999987664
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=4.2e-73 Score=627.07 Aligned_cols=510 Identities=17% Similarity=0.175 Sum_probs=404.4
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
++.++|++++. .+|+++|+++.+. +..+++||+||.+++.++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 12 tl~~~l~~~a~-~~p~~~a~~~~~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 12 SLVDVVRLRAL-HSPNKKSCTFLNK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp SHHHHHHHHHH-HCTTSEEEEEEET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHH-hCCCCeEEEEEcC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 35678888888 7999999998652 34689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCC---CHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHH-HHhhhcCCCccEEEEEecCCccccc
Q 006776 134 GAVHSVVFAGF---SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAAL-DECAKSGISVDVCLTYENQSAMTRE 209 (631)
Q Consensus 134 G~v~v~l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vi~~~~~~~~~~~ 209 (631)
|++++|++|.+ +.+++.++++.+++++++++..... .+.... ... +....+..+..
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~------- 148 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIK---------KFTADELNTN----PKFLKIPAIAL------- 148 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHH---------HHCC-----C----CEETTEEEEEG-------
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHH---------HHHHhhhhhc----ccccccceeec-------
Confidence 99999999988 4578999999999999998754221 110000 010 11111111110
Q ss_pred cCcCCCCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEec
Q 006776 210 NTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 289 (631)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~ 289 (631)
++...............++++++|+|||||||.||||+++|++++.+... ....+++.++|++++.+
T Consensus 149 ------------~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~~ 215 (590)
T 3kxw_A 149 ------------ESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNK-IFTSFHMNDETIIFSWL 215 (590)
T ss_dssp ------------GGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHH-HHHHTTCCTTCEEEECS
T ss_pred ------------hhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHH-HHHhhCCCCcCeEEEec
Confidence 00000000111223456899999999999999999999999996655444 44578999999999999
Q ss_pred ccceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCc-cccccCCCceeEEE
Q 006776 290 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE-YVTRYSRKSLRVLG 368 (631)
Q Consensus 290 ~~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~-~~~~~~l~~lr~v~ 368 (631)
|++|.+|....++.+++.|+++++.+......++..+++.|+++++|++.++|+++..+.+.... .....++++||.++
T Consensus 216 p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~ 295 (590)
T 3kxw_A 216 PPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAF 295 (590)
T ss_dssp CTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEE
T ss_pred CCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHh
Confidence 99999998666889999999999975421112678899999999999999999999999876432 23456789999999
Q ss_pred EccCCCCHhHHHHHHHHhCC---CCcceecccccccccceecccCCCC-------------------------CCCCCCC
Q 006776 369 SVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGA-------------------------WPQKPGS 420 (631)
Q Consensus 369 ~~Ge~l~~~~~~~~~~~~~~---~~~~i~~~yg~tE~g~~~~~~~~~~-------------------------~~~~~~~ 420 (631)
+||+++++++.+++.+.++. .++++++.||+||++++++...+.. .....++
T Consensus 296 ~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (590)
T 3kxw_A 296 NGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVS 375 (590)
T ss_dssp ECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEEC
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEec
Confidence 99999999999999999852 2357999999999998766432210 1123468
Q ss_pred cCCCcCCCceEEeCCC-CcccCCCcceeEEEecCCCcccccccCCchhhhhhcccc----CCC--eEecCceEEEccCCe
Q 006776 421 ATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP----FPG--YYFTGDGCSRDKDGY 493 (631)
Q Consensus 421 ~G~p~~~~~~~i~d~~-g~~~~~g~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~----~~g--~~~TGDl~~~~~dG~ 493 (631)
+|.|+++ ++|+|++ +++++.|+.|||+|+| |+++.|||++++.+...|... .+| ||+|||+|++| ||+
T Consensus 376 ~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g--~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~ 450 (590)
T 3kxw_A 376 SGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQS--NSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENE 450 (590)
T ss_dssp CCEESSE--EEEECTTTCCBCCTTBCEEEEEES--TTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTE
T ss_pred cCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeC--CcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCE
Confidence 8999998 8899986 8999999999999999 999999999999988887541 124 99999999999 999
Q ss_pred EEEEeecCCeEecCceeechHHHHHHH-hcCcccc--eEEEEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhh
Q 006776 494 HWLTGRVDDVINVSGHRIGTAEVESAL-VSHPQCA--EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ 570 (631)
Q Consensus 494 l~i~GR~dd~i~~~G~~i~~~eIE~~l-~~~~~V~--~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~ 570 (631)
++|+||+||+||++|++|+|.|||++| ..||.|. +|+|++++++. ++.+++++++.++... +...+++.++|++.
T Consensus 451 l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~~l~~~l~~~ 528 (590)
T 3kxw_A 451 LYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMD-DVAQDNLFNEIFEL 528 (590)
T ss_dssp EEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCC-HHHHHHHHHHHHHH
T ss_pred EEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEecccccc-chhHHHHHHHHHHH
Confidence 999999999999999999999999999 7899998 89999999875 7888999998876421 22355677777777
Q ss_pred cCC-CccCc-eEEEC--CCCCCCCCchhhHHHHHHHHhcC
Q 006776 571 IGA-FAAPD-KIHWA--PGLPKTRSGKIMRRILRKIASRQ 606 (631)
Q Consensus 571 l~~-~~~p~-~i~~v--~~lP~t~sGKi~r~~l~~~~~~~ 606 (631)
+.. +++|. .++++ ++||+|++||++|+.|++++.+.
T Consensus 529 l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 529 VYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp HHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 664 56665 45554 79999999999999999999875
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.2e-73 Score=626.93 Aligned_cols=513 Identities=17% Similarity=0.136 Sum_probs=304.9
Q ss_pred hhhhhhhhhccCCCCeeEEEEEcCC----CCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHH
Q 006776 55 CYNCLDRNIEAGLGDKVAIYWEAND----PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 130 (631)
Q Consensus 55 ~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~ 130 (631)
+.++|++++. .+|+++|+++.+.. .+..+++||+||.++++++|++|.+.|+ +||+|+++++|++++++++|||
T Consensus 22 l~~~l~~~a~-~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~ 99 (562)
T 3ite_A 22 PSHYIETWAK-THPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGI 99 (562)
T ss_dssp TTHHHHHHHH-HCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHH
Confidence 4578888888 79999999976421 1234789999999999999999999999 7999999999999999999999
Q ss_pred HHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCcccccc
Q 006776 131 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 210 (631)
Q Consensus 131 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 210 (631)
+++|++++|+++.++.+++.+++++++++++|+++....... . +....++...
T Consensus 100 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~--------------~----~~~~~~~~~~--------- 152 (562)
T 3ite_A 100 MKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE--------------L----PPETKVLDTK--------- 152 (562)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC--------------C----CTTCEEEETT---------
T ss_pred HHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc--------------c----Cccceeeccc---------
Confidence 999999999999999999999999999999999865432110 0 1111111100
Q ss_pred CcCCCCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHH-------hcCCCCCc
Q 006776 211 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY-------AFDYKPSD 283 (631)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~-------~~~~~~~d 283 (631)
...+.+...............++++++|+|||||||.||||+++|++++......... .+.+...+
T Consensus 153 -------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (562)
T 3ite_A 153 -------NQSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVG 225 (562)
T ss_dssp -------CHHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTC
T ss_pred -------chhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCc
Confidence 0112222211111112223457889999999999999999999999965544332221 24577889
Q ss_pred EEEEecccceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCc
Q 006776 284 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 363 (631)
Q Consensus 284 ~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~ 363 (631)
++++..++.|..+. ..++.++..|+++++.+.. ..++.+++.++++++|++.++|++++.+... ..++++
T Consensus 226 ~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------~~~~~~ 295 (562)
T 3ite_A 226 KFLCLASRAFDVHI-GEMFLAWRFGLCAVTGERL---SMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------PEDAPH 295 (562)
T ss_dssp EEECCSCTTSTHHH-HHHHHHHHTTCEEEECCHH---HHHHSHHHHHHHTTCCEEEECHHHHHHHTCC------GGGSTT
T ss_pred eEEEecCchhhhhH-HHHHHHHhcccEEEecchh---hCHHHHHHHHHHcCCCEEEcCHHHHhhcccC------ccccCc
Confidence 99999999988764 5678889999999886431 1356788999999999999999998877433 235789
Q ss_pred eeEEEEccCCCCHhHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCCCcCCCceEEeCC-CCcccCC
Q 006776 364 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEG 442 (631)
Q Consensus 364 lr~v~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~g~~~~~ 442 (631)
||.+++||+++++++.+++.+.++ +++++.||+||++..++...... ....+++|+|+++++++|+|+ ++++++.
T Consensus 296 lr~~~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~~ 371 (562)
T 3ite_A 296 LVYLGVGGEKMTPRTQQIWSSSDR---VALVNVYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVKK 371 (562)
T ss_dssp CCEEEEESSCCCHHHHHHHTTCSS---CEEEEEECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCCT
T ss_pred eEEEEEecCCCCHHHHHHHhhCCC---cEEEEeeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCCC
Confidence 999999999999999999988665 79999999999987554432221 245678999999999999996 6788999
Q ss_pred CcceeEEEecCCCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhc
Q 006776 443 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVS 522 (631)
Q Consensus 443 g~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~ 522 (631)
|+.|||+|+| |+++.|||++++.+...+ .+.++||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+
T Consensus 372 g~~GEl~v~g--~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~ 448 (562)
T 3ite_A 372 GMAGELVIEG--SLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRS 448 (562)
T ss_dssp TSCEEEEEES--TTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEEEEEEC----------------------
T ss_pred CCceEEEEec--cccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHh
Confidence 9999999999 999999999998665433 2123499999999999999999999999999999999999999999999
Q ss_pred C-cccceEEEEeeecCCCCeeEEEEEEeCCCCCCc----------HHHHHHHHHHHHhhcCCCccCceEEECCCCCCC-C
Q 006776 523 H-PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS----------EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT-R 590 (631)
Q Consensus 523 ~-~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~----------~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t-~ 590 (631)
| |.+.+++|++.+++..++..+++++...+.... ..+.++|+++|+++|+.|++|+.|+++++||+| +
T Consensus 449 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~ 528 (562)
T 3ite_A 449 LSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDT 528 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCC
Confidence 8 788899999998887777666666554433221 123468999999999999999999999999998 8
Q ss_pred CchhhHHHHHHHHhcCc--CCCCCCCCCCChH
Q 006776 591 SGKIMRRILRKIASRQL--DELGDTSTLADPG 620 (631)
Q Consensus 591 sGKi~r~~l~~~~~~~~--~~~~~~~~~~~~~ 620 (631)
+||++|++|++++.+.. +.....+++.||.
T Consensus 529 ~GKi~r~~L~~~~~~~~~~~~~~~~s~~~~~p 560 (562)
T 3ite_A 529 SAKTDAKALEHMFHTLSLGELFGESSSLVNKP 560 (562)
T ss_dssp --------------------------------
T ss_pred CCcchHHHHHHHHhccCHHHHhccCccccCCC
Confidence 99999999999997542 1234557777754
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3.2e-72 Score=618.63 Aligned_cols=506 Identities=21% Similarity=0.237 Sum_probs=405.4
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
++.++|++++. .+|+.+++.. ..+..+++||+||.+++.++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 22 tl~~~l~~~a~-~~p~~~~~~~---~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 97 (576)
T 3gqw_A 22 TLVDALDYAAL-SSAGMNFYDR---RCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYA 97 (576)
T ss_dssp SHHHHHHHHTT-SSCEEEEECT---TSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHhh-CCCCeEEeCC---CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 57788888887 7888776542 2245689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCC-------HHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCcc
Q 006776 134 GAVHSVVFAGFS-------SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM 206 (631)
Q Consensus 134 G~v~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 206 (631)
|++++|+++.++ .+++.+++++++++++|+++... ..+....... +.+. ++..
T Consensus 98 G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~----~~~~-~~~~------ 157 (576)
T 3gqw_A 98 GLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWL---------PLVNAATHDN----PELH-VLSH------ 157 (576)
T ss_dssp TCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGH---------HHHHHHGGGC----TTCE-EEEH------
T ss_pred CCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHH---------HHHHHhhccC----Ccce-ecch------
Confidence 999999999999 89999999999999999986532 2222222111 2111 1100
Q ss_pred ccccCcCCCCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEE
Q 006776 207 TRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYW 286 (631)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~ 286 (631)
.+.+.... .........++++++|+|||||||.||||+++|++++.+........+++.++|+++
T Consensus 158 -------------~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l 222 (576)
T 3gqw_A 158 -------------AWFKALPE--ADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCV 222 (576)
T ss_dssp -------------HHHHTSCC--CCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEE
T ss_pred -------------hhhhcccc--cccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEE
Confidence 01111111 111222345799999999999999999999999997666555444447899999999
Q ss_pred EecccceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCcc-ccccCCCcee
Q 006776 287 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY-VTRYSRKSLR 365 (631)
Q Consensus 287 ~~~~~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~-~~~~~l~~lr 365 (631)
+.+|++|.+|....++.++..|+++++.......+++..+++.|+++++|++.++|++++.+.+..... ....+++++|
T Consensus 223 ~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr 302 (576)
T 3gqw_A 223 SWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWR 302 (576)
T ss_dssp ECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCC
T ss_pred EcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhH
Confidence 999999999987777888999999988754222237788999999999999999999999887765432 3456789999
Q ss_pred EEEEccCCCCHhHHHHHHHHhCC---CCcceecccccccccceecccCCCCC----------------CC----------
Q 006776 366 VLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW----------------PQ---------- 416 (631)
Q Consensus 366 ~v~~~Ge~l~~~~~~~~~~~~~~---~~~~i~~~yg~tE~g~~~~~~~~~~~----------------~~---------- 416 (631)
.+++|||++++++.+++.+.++. .++++++.||+||++.+++....... ..
T Consensus 303 ~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 382 (576)
T 3gqw_A 303 VAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVS 382 (576)
T ss_dssp EEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEE
T ss_pred hhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCcc
Confidence 99999999999999999998842 13789999999999987654321110 01
Q ss_pred CCCCcCCCcCCCceEEeCCCCcccCCCcceeEEEecCCCcccccccCCchhhhhhccccCCCeEecCceEEEccCCeEEE
Q 006776 417 KPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWL 496 (631)
Q Consensus 417 ~~~~~G~p~~~~~~~i~d~~g~~~~~g~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i 496 (631)
...++|+|+++++++|+|++|++++.|+.|||+|+| |+++.|||++++.+...+ .+|||+|||+|++ +||++++
T Consensus 383 ~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g--~~~~~gY~~~~~~~~~~~---~~g~~~TGDl~~~-~dG~l~~ 456 (576)
T 3gqw_A 383 TFVNCGKALPEHGIEIRNEAGMPVAERVVGHICISG--PSLMSGYFGDQVSQDEIA---ATGWLDTGDLGYL-LDGYLYV 456 (576)
T ss_dssp EEEBCCEECTTCEEEEECTTSCBCCTTBCEEEEEES--TTSCCCBTTCHHHHHHHH---HHSCEEEEEEEEE-ETTEEEE
T ss_pred ceeecCCcCCCCeEEEECCCCCCCCCCCeEEEEEeC--ccccccccCCcccccccc---CCCeeeccceEEE-ECCEEEE
Confidence 112789999999999999999999999999999999 999999999988665543 2789999999999 7999999
Q ss_pred EeecCCeEecCceeechHHHHHHHhcCcccceEEEEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhc-CCCc
Q 006776 497 TGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI-GAFA 575 (631)
Q Consensus 497 ~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l-~~~~ 575 (631)
+||+||+||++|++|+|.|||++|.+||+|.+++|++..++. +...++++.... .+...+++.+.+++.+ +.++
T Consensus 457 ~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~--~~~~~~~~~~~~---~~~~~~~l~~~l~~~l~~~~~ 531 (576)
T 3gqw_A 457 TGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCRIS---DEERRGQLIHALAARIQSEFG 531 (576)
T ss_dssp EEETTTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTT--SCEEEEEECCCC---CHHHHHHHHHHHHHHHHHHHS
T ss_pred EecCcceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCC--ccEEEEEEEecC---chhHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999887763 335555554432 2344667788888877 5688
Q ss_pred cCceEEECC--CCCCCCCchhhHHHHHHHHhcCcCC
Q 006776 576 APDKIHWAP--GLPKTRSGKIMRRILRKIASRQLDE 609 (631)
Q Consensus 576 ~p~~i~~v~--~lP~t~sGKi~r~~l~~~~~~~~~~ 609 (631)
+|..+.+++ +||+|++||++|+.|++.+.+...+
T Consensus 532 ~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~~ 567 (576)
T 3gqw_A 532 VTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKAYAA 567 (576)
T ss_dssp CCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHHHTC
T ss_pred CceeEEEECCCCcCcCCCccchHHHHHHHHHHHhhh
Confidence 999988887 9999999999999999999876543
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.4e-71 Score=663.10 Aligned_cols=489 Identities=23% Similarity=0.324 Sum_probs=410.6
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCCCCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHh
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 133 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 133 (631)
++++++.+++. .+|+++|+++. .+++||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++
T Consensus 465 ~l~~~~~~~~~-~~p~~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailka 537 (1304)
T 2vsq_A 465 PLTYWFKEAVN-ANPDAPALTYS------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKA 537 (1304)
T ss_dssp CHHHHHHHHHH-HCTTSEEEESS------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-hCCCCeEEEEC------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHH
Confidence 57788888888 79999999853 578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccccccCcC
Q 006776 134 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 213 (631)
Q Consensus 134 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 213 (631)
|++++|++|.++.+++.++++++++++++++........ .+ +....++.+....
T Consensus 538 G~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~-------------~~----~~~~~~~~~~~~~--------- 591 (1304)
T 2vsq_A 538 GAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA-------------EL----PYTGTTLFIDDQT--------- 591 (1304)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST-------------TC----CCCSEEEESSCGG---------
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh-------------cc----CCCCcEEEecccc---------
Confidence 999999999999999999999999999999875432110 01 1112222221100
Q ss_pred CCCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecccce
Q 006776 214 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 293 (631)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 293 (631)
.+. . ....+.....+++++||+|||||||.||||+++|+++. +.. .....+++.++|++++.++++|
T Consensus 592 ------~~~---~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~-~~~-~~~~~~~~~~~d~~l~~~~~~f 658 (1304)
T 2vsq_A 592 ------RFE---E--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQ-GLV-KHVDYMAFSDQDTFLSVSNYAF 658 (1304)
T ss_dssp ------GGG---S--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHH-HHH-SSCCSSCCCTTCEEEECSCTTS
T ss_pred ------ccc---c--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHH-HHH-HHHHhcCCCCCCEEEEECCccH
Confidence 000 0 01111223568999999999999999999999999954 432 2334567889999999999998
Q ss_pred ecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccCC
Q 006776 294 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 373 (631)
Q Consensus 294 ~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge~ 373 (631)
..+. +.++.+|+.|+++++.+.... .++..+++.|+++++|++.++|++++.|.+.... .+++||.+++|||+
T Consensus 659 d~~~-~~~~~~l~~G~~l~~~~~~~~-~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~-----~~~~lr~~~~gGe~ 731 (1304)
T 2vsq_A 659 DAFT-FDFYASMLNAARLIIADEHTL-LDTERLTDLILQENVNVMFATTALFNLLTDAGED-----WMKGLRCILFGGER 731 (1304)
T ss_dssp THHH-HHHHHHHTTTCEEEECCGGGT-TCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH-----HHHTCSEEEEESSC
T ss_pred HHHH-HHHHHHHHcCCEEEECChhhc-CCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh-----cCCCccEEEEecCC
Confidence 8774 678999999999999875333 4889999999999999999999999999875321 35789999999999
Q ss_pred CCHhHHHHHHHHhCCCCcceecccccccccceecccCCCC--CCCCCCCcCCCcCCCceEEeCCCCcccCCCcceeEEEe
Q 006776 374 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA--WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 451 (631)
Q Consensus 374 l~~~~~~~~~~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~Gel~v~ 451 (631)
+++++.+.+.+.++ .+.++|.||+||++..++...... ......++|+|+++++++|+|+++++++.|+.|||+|+
T Consensus 732 l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~ 809 (1304)
T 2vsq_A 732 ASVPHVRKALRIMG--PGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCIS 809 (1304)
T ss_dssp CCHHHHHHHHHHHC--TTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEE
T ss_pred CCHHHHHHHHHhCC--CCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEe
Confidence 99999999999887 478999999999987655432211 12345689999999999999999999999999999999
Q ss_pred cCCCcccccccCCchhhhhhccc----cCCCeEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHHhcCcccc
Q 006776 452 SSWPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCA 527 (631)
Q Consensus 452 ~~~p~~~~gy~~~~~~~~~~~~~----~~~g~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~ 527 (631)
| |+++.|||++++.+...|.. +.++||+|||+|++++||.++++||+||+||++|+||+|.|||++|.+||+|.
T Consensus 810 G--~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~ 887 (1304)
T 2vsq_A 810 G--MGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVK 887 (1304)
T ss_dssp E--TTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCC
T ss_pred c--cccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCc
Confidence 9 99999999999998888753 22459999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHHHHh
Q 006776 528 EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 604 (631)
Q Consensus 528 ~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~~ 604 (631)
+|+|++.+++..++.++++|+..... + .++|+++++++|+.|++|..++++++||+|+|||++|++|++...
T Consensus 888 ~a~V~~~~~~~~~~~l~a~vv~~~~~--~---~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 888 DAVVVADRHESGDASINAYLVNRTQL--S---AEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQ 959 (1304)
T ss_dssp EEEEEEECCSSSCCEEEEEEECSSSS--C---HHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCG
T ss_pred eEEEEEEecCCCCEEEEEEEeCCCCC--C---HHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcch
Confidence 99999998888888999999976532 2 568999999999999999999999999999999999999976544
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.9e-58 Score=497.09 Aligned_cols=406 Identities=19% Similarity=0.210 Sum_probs=311.9
Q ss_pred HhhhhhhhhhccCCCCeeEEEEEcCC---CCceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHH
Q 006776 54 ICYNCLDRNIEAGLGDKVAIYWEAND---PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 130 (631)
Q Consensus 54 ~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~ 130 (631)
++.++|.++++ .+|+++|+++.+.. .+..+++||+||.++++++|++|++.|+ +||+|+++++|++++++++|||
T Consensus 25 tl~~~l~~~a~-~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~ 102 (480)
T 3t5a_A 25 SLPAALRACAR-LQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGA 102 (480)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHH
T ss_pred cHHHHHHHHHH-hCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHH
Confidence 46688888888 79999999987521 1334899999999999999999999996 9999999999999999999999
Q ss_pred HHhCCEEEecCC---CCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHHHHHHhhhcCCCccEEEEEecCCccc
Q 006776 131 ARIGAVHSVVFA---GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 207 (631)
Q Consensus 131 ~~~G~v~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 207 (631)
+++|++++|+++ .++.+++.+++++++++++|+++... ..+.+...... ......++.++..
T Consensus 103 ~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~---- 167 (480)
T 3t5a_A 103 LQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAV---------DDVVQHVARRP--GESPPSIIEVDLL---- 167 (480)
T ss_dssp HHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH---------HHHHHTCC--------CCEEEEGGGS----
T ss_pred HHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHH---------HHHHHHHhccc--cccccceeEeccc----
Confidence 999999999999 78899999999999999999987542 11111111110 0011122222111
Q ss_pred cccCcCCCCCccchhhhcccCCCCCCceecCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCC------
Q 006776 208 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP------ 281 (631)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~------ 281 (631)
..............++++++|+|||||||.||||+++|++++.+.... ...+++.+
T Consensus 168 -----------------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~~~~~~~~~~~~ 229 (480)
T 3t5a_A 168 -----------------DLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQL-MSGYFADTDGIPPP 229 (480)
T ss_dssp -----------------CTTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHH-HHHHCTTTTTCCCT
T ss_pred -----------------ccccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHH-HHHhccccccCCCC
Confidence 000111122234568899999999999999999999999966555443 33556666
Q ss_pred CcEEEEecccceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCC--cccccc
Q 006776 282 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN--EYVTRY 359 (631)
Q Consensus 282 ~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~~ 359 (631)
+|++++.+|++|.+|+...++.+++.|+++++.+......++..+++.++++++| +.++|+++..++.... ......
T Consensus 230 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~ 308 (480)
T 3t5a_A 230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGR 308 (480)
T ss_dssp TEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTC
T ss_pred CCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccccccc
Confidence 8999999999999998778899999999999975321112788999999999999 7888998888876421 223456
Q ss_pred CCCceeEEEEccCCCCHhHHHHHHHHhCC---CCcceecccccccccceecccCCCCC----------------------
Q 006776 360 SRKSLRVLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW---------------------- 414 (631)
Q Consensus 360 ~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~---~~~~i~~~yg~tE~g~~~~~~~~~~~---------------------- 414 (631)
++++||.+++|||++++++.+++.+.++. .++.+++.||+||++..++....+..
T Consensus 309 ~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 388 (480)
T 3t5a_A 309 DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGG 388 (480)
T ss_dssp CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSS
T ss_pred chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCC
Confidence 78999999999999999999999999852 24679999999999987665443211
Q ss_pred -CCCCCCcCCCcCCCceEEeCCC-CcccCCCcceeEEEecCCCcccccccCCchhhhhhccc---------cCCCeEecC
Q 006776 415 -PQKPGSATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK---------PFPGYYFTG 483 (631)
Q Consensus 415 -~~~~~~~G~p~~~~~~~i~d~~-g~~~~~g~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~---------~~~g~~~TG 483 (631)
....+++|+|++ ++++|+|++ |++++.|+.|||+|+| |+++.|||++++.+.+.|.. +.+|||+||
T Consensus 389 ~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g--~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TG 465 (480)
T 3t5a_A 389 GATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHG--DNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465 (480)
T ss_dssp SCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEES--TTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEE
T ss_pred CcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeC--CccccccccCcchhHHHHhhhhccccCCCCCCCeeecc
Confidence 124468999999 999999986 7999999999999999 99999999999999888741 135799999
Q ss_pred ceEEEccCCeEEEEee
Q 006776 484 DGCSRDKDGYHWLTGR 499 (631)
Q Consensus 484 Dl~~~~~dG~l~i~GR 499 (631)
|+|++| ||+++|+||
T Consensus 466 Dlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 466 DSGFVT-DGKMFIIGR 480 (480)
T ss_dssp EEEEEE-TTEEEECC-
T ss_pred ceeeEE-CCEEEEeCC
Confidence 999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.9e-53 Score=437.58 Aligned_cols=316 Identities=20% Similarity=0.211 Sum_probs=265.1
Q ss_pred CCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHHHHHhcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEEecCCC
Q 006776 239 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAP 318 (631)
Q Consensus 239 ~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~~~~ 318 (631)
.++++||+|||||||.||||+++|++++.+. ......++++++|++++.+|++|++|+ ..++.+++.|+++++.+..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASA-AMTGKALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHH-HHHHHHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHH-HHHHHHhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc-
Confidence 4789999999999999999999999965444 444557899999999999999999986 4567889999999998643
Q ss_pred CCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccCCCCHhHHHHHHHHhCCCCcceecccc
Q 006776 319 TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWW 398 (631)
Q Consensus 319 ~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~yg 398 (631)
.+ .++.|+++++|++.++|++++.|++.... ..++++||.+++||+++++++.+++.+ ++ +++++.||
T Consensus 113 --~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~---~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~---~~~~~~YG 180 (358)
T 4gs5_A 113 --AN---PLAGLDHADFDFVAMVPMQLQSILENSAT---SGQVDRLGKVLLGGAPVNHALAMQISD-LA---MPVYQSYG 180 (358)
T ss_dssp --SC---TTTTCSSCCCSEEEECHHHHHHHHHCTTT---GGGGGGGCSEEECSSCCCHHHHHHHHT-CS---SCEEEEEE
T ss_pred --cc---HHHHHHHhCCeEEEcChHHHHHhhccccc---cccCCcceEEEEcccCCCchheecccc-cC---ceEEeccc
Confidence 12 35678999999999999999999987542 346899999999999999999999876 34 78999999
Q ss_pred cccccceecccCCCCCCCCCCCcCCCcCCCceEEeCCCCcccCCCcceeEEEecCCCcccccccCCchhhhhhccccCCC
Q 006776 399 QTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 478 (631)
Q Consensus 399 ~tE~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g 478 (631)
+||+++.+...... ....+++|.+.||+++.+.+ .|||++++ |.. .+|
T Consensus 181 ~TEt~~~~~~~~~~--~~~~g~~~~~~pgv~~~~~~----------~Gel~~~g--~~~------------------~~g 228 (358)
T 4gs5_A 181 MTETVSHVALKALN--GPEASELYVFLPGIQYGVDE----------RGCLHISG--AVT------------------NGQ 228 (358)
T ss_dssp CGGGSSEEEEEECS--STTCCSCEEECTTCEEEECT----------TSEEEEES--GGG------------------TTC
T ss_pred cccccceeeccccc--ccccceeeccCCCeEEEecC----------cCceEEec--ccc------------------cCc
Confidence 99999866554332 24567889999998887643 59999998 211 268
Q ss_pred eEecCceEEEccCCeEEEEeecCCeEecCceeechHHHHHHH---hcCcccceEEEE-eeecCCCCeeEEEEEEeCCCCC
Q 006776 479 YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESAL---VSHPQCAEAAVV-GVEHEVKGQGIYAFVTLVEGVP 554 (631)
Q Consensus 479 ~~~TGDl~~~~~dG~l~i~GR~dd~i~~~G~~i~~~eIE~~l---~~~~~V~~~~vv-~~~~~~~~~~~~~~v~~~~~~~ 554 (631)
||+|||+|++|+|| ++++||+||+||++|++|+|.|||++| .+||+|.+++|+ +.+++..|+.++++|+...+
T Consensus 229 ~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-- 305 (358)
T 4gs5_A 229 TVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-- 305 (358)
T ss_dssp CEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC--
T ss_pred ceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC--
Confidence 99999999999988 556799999999999999999999877 468999998886 67788889999998875432
Q ss_pred CcHHHHHHHHHHHHhhcCCCccCceEEECCCCCCCCCchhhHHHHHHHHhcC
Q 006776 555 YSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 606 (631)
Q Consensus 555 ~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~~lP~t~sGKi~r~~l~~~~~~~ 606 (631)
+...++|+++|+++|+.|++|+.|+++++||+|++||++|++|++.+.+.
T Consensus 306 --~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 306 --EALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp --HHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred --CcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 44578899999999999999999999999999999999999999988753
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=2.9e-49 Score=419.48 Aligned_cols=331 Identities=19% Similarity=0.186 Sum_probs=265.1
Q ss_pred cCC-CCCeEEEeCCCCCCCCceEEEcCchHHHHHHHH--HHHhcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEE
Q 006776 237 VDA-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT--FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 313 (631)
Q Consensus 237 ~~~-~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl 313 (631)
.++ +++++|+|||||||.||+|+++|+++..+.... ....+++.++|++++.+|++|..+....++.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 455 889999999999999999999999965443322 22346889999999999998888777778889999999998
Q ss_pred ecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccCCCCHhHHHHHHHHhCCCCcce
Q 006776 314 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI 393 (631)
Q Consensus 314 ~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~~~i 393 (631)
.+. .+++.+++.|+++++|++.++|+++..|.+.........++++||.+++|||++++++.+++.+.++ +++
T Consensus 162 ~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v 234 (436)
T 3qov_A 162 AAA----GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLN---VKA 234 (436)
T ss_dssp CCS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHT---SEE
T ss_pred CCC----CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhC---ccE
Confidence 764 3889999999999999999999999999876432222234789999999999999999999999997 889
Q ss_pred ecccccccccce-ecccCCCCCCCCCCCcCCCcCCCceEEeC-CCCcccCCCcceeEEEecCCCcccccccCCchhhhhh
Q 006776 394 SDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 471 (631)
Q Consensus 394 ~~~yg~tE~g~~-~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~p~~~~gy~~~~~~~~~~ 471 (631)
++.||+||+++. +..... .....+.|.+++.++|+| ++|++++.|+.|||+|++ +.. ..
T Consensus 235 ~~~YG~TE~~~~~~~~~~~-----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~--~~~------------~~ 295 (436)
T 3qov_A 235 YNSFGMTEMNGPGVAFECQ-----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTT--LDR------------EM 295 (436)
T ss_dssp EEEEEEGGGTEEEEEEECT-----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEE--SSC------------CS
T ss_pred EecCcchhhcCCeeEEecC-----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEec--cCc------------CC
Confidence 999999999654 332221 122366777899999999 689999999999999998 210 11
Q ss_pred ccccCCCeEecCceEEEccCC------e---EEEEeecCCeEecCceeechHHHHHHHhcCcccceEEEEeeecCCCCee
Q 006776 472 YFKPFPGYYFTGDGCSRDKDG------Y---HWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQG 542 (631)
Q Consensus 472 ~~~~~~g~~~TGDl~~~~~dG------~---l~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~~~vv~~~~~~~~~~ 542 (631)
+ ..+||+|||+|+++++| + ++|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.
T Consensus 296 ~---~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~ 372 (436)
T 3qov_A 296 M---PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDE 372 (436)
T ss_dssp S---CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEE
T ss_pred c---eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcE
Confidence 1 25799999999999998 5 6999999999999999999999999999999999999999998888899
Q ss_pred EEEEEEeCCCCCCc-HHHHHHHHHHHHhhcCCC-ccCceEEECC--CCCCCCCchhhHHH
Q 006776 543 IYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAF-AAPDKIHWAP--GLPKTRSGKIMRRI 598 (631)
Q Consensus 543 ~~~~v~~~~~~~~~-~~~~~~i~~~~~~~l~~~-~~p~~i~~v~--~lP~t~sGKi~r~~ 598 (631)
++++|+++ +...+ ....+++++.|++.|+.+ .+|..|.+++ +||+|+ ||++|..
T Consensus 373 l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 373 MIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred EEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 99999998 54332 222445666666666666 7888999999 999999 9998853
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=5.5e-48 Score=410.59 Aligned_cols=336 Identities=20% Similarity=0.189 Sum_probs=268.9
Q ss_pred cCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHH--HHHHhcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEEe
Q 006776 237 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT--TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 314 (631)
Q Consensus 237 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~ 314 (631)
.+++++++|+|||||||.||+|+++|+++...... .....+++.++|++++.+|+++..+....++.++..|+++++.
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 46789999999999999999999999996544322 2223578899999999999865554455678889999999887
Q ss_pred cCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccCCCCHhHHHHHHHHhCCCCccee
Q 006776 315 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 394 (631)
Q Consensus 315 ~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~~~i~ 394 (631)
+. .+++.+++.|+++++|++.++|+++..|.+..........++++|.+++|||++++++.+++.+.+| ++++
T Consensus 169 ~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v~ 241 (443)
T 2y4o_A 169 SG----GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVG---IDAL 241 (443)
T ss_dssp CS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT---CEEE
T ss_pred CC----CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhC---cCEE
Confidence 54 3899999999999999999999999999875321111113579999999999999999999999997 7899
Q ss_pred cccccccccce-ecccCCCCCCCCCCCcCCCcCCCceEEeCC-CCcccCCCcceeEEEecCCCcccccccCCchhhhhhc
Q 006776 395 DTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTY 472 (631)
Q Consensus 395 ~~yg~tE~g~~-~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~g~~~~~g~~Gel~v~~~~p~~~~gy~~~~~~~~~~~ 472 (631)
+.||+||+++. +....+. .....+.|.+++.++|+|+ +|++++.|+.|||+|++ .. ...+
T Consensus 242 ~~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~--~t------------~~~~ 303 (443)
T 2y4o_A 242 DIYGLSEVMGPGVACECVE----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTS--LT------------KEAM 303 (443)
T ss_dssp EEEEETTTTEEEEEEECTT----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE--SS------------CSSS
T ss_pred eccCchhhcCCeEEeccCC----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeC--CC------------cccC
Confidence 99999998543 3322221 1112455678999999995 69999999999999998 21 1111
Q ss_pred cccCCCeEecCceEEEccC-CeE-----EEEeecCCeEecCceeechHHHHHHHhcCcccceEEEEeeecCCCCeeEEEE
Q 006776 473 FKPFPGYYFTGDGCSRDKD-GYH-----WLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAF 546 (631)
Q Consensus 473 ~~~~~g~~~TGDl~~~~~d-G~l-----~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~~~vv~~~~~~~~~~~~~~ 546 (631)
..+||+|||+|+++++ |++ +++||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++++
T Consensus 304 ---p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~ 380 (443)
T 2y4o_A 304 ---PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLA 380 (443)
T ss_dssp ---CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEE
T ss_pred ---hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEE
Confidence 2579999999999999 986 8999999999999999999999999999999999999999887778889999
Q ss_pred EEeCC--CCCCcHHHHHHHHHHHHhhcCCC-ccCceEEEC--CCCCCCCCchhhHHHHH
Q 006776 547 VTLVE--GVPYSEELRKSLVLAVRKQIGAF-AAPDKIHWA--PGLPKTRSGKIMRRILR 600 (631)
Q Consensus 547 v~~~~--~~~~~~~~~~~i~~~~~~~l~~~-~~p~~i~~v--~~lP~t~sGKi~r~~l~ 600 (631)
|++.+ +........++++++|+++|+.+ .+|..|.++ ++||+|++||++|+..+
T Consensus 381 v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 381 VELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp EEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred EEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEec
Confidence 99875 32212223567788888888766 488888887 59999999999987543
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.2e-47 Score=407.31 Aligned_cols=333 Identities=19% Similarity=0.137 Sum_probs=268.1
Q ss_pred cCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHH--HHHHhcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEEe
Q 006776 237 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT--TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 314 (631)
Q Consensus 237 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~ 314 (631)
.+++++++|+|||||||.||+|+++|+++...... .....+++.++|++++.+|+++..+....++.++..|+++++.
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 46789999999999999999999999996544322 2223578899999999999854444445678889999999876
Q ss_pred cCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEccCCCCHhHHHHHHHHhCCCCccee
Q 006776 315 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 394 (631)
Q Consensus 315 ~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~~~i~ 394 (631)
+. .+++.+++.|+++++|++.++|+++..|.+..........++++|.+++|||++++++.+++.+.+| ++++
T Consensus 167 ~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v~ 239 (437)
T 2y27_A 167 GG----GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMG---IDAV 239 (437)
T ss_dssp CS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT---SEEE
T ss_pred CC----CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHC---cCEE
Confidence 54 3899999999999999999999999999875321111112579999999999999999999999987 7899
Q ss_pred cccccccccce-ecccCCCCCCCCCCCcCCCcCCCceEEeCC-CCcccCCCcceeEEEecCCCcccccccCCchhhhhhc
Q 006776 395 DTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTY 472 (631)
Q Consensus 395 ~~yg~tE~g~~-~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~g~~~~~g~~Gel~v~~~~p~~~~gy~~~~~~~~~~~ 472 (631)
+.||+||+++. +....+. .....+.|.+++.++|+|+ +|++++.|+.|||+|++ .. ...+
T Consensus 240 ~~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~--~t------------~~~~ 301 (437)
T 2y27_A 240 DIYGLSEVMGPGVASECVE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTS--LT------------KEAL 301 (437)
T ss_dssp EEEEETTTTEEEEEECCTT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE--SS------------CSSS
T ss_pred ecCCchhhcCCeeEEecCC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEec--CC------------cCCc
Confidence 99999998443 3332221 1112556778999999996 69999999999999998 11 1111
Q ss_pred cccCCCeEecCceEEEcc-CCeE-----EEEeecCCeEecCceeechHHHHHHHhcCcccceEEEEeeecCCCCeeEEEE
Q 006776 473 FKPFPGYYFTGDGCSRDK-DGYH-----WLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAF 546 (631)
Q Consensus 473 ~~~~~g~~~TGDl~~~~~-dG~l-----~i~GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~~~vv~~~~~~~~~~~~~~ 546 (631)
..+||+|||+|++++ +|++ +|.||.||+||++|++|+|.+||++|.+||+|.+++|++++++..++.++++
T Consensus 302 ---~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~ 378 (437)
T 2y27_A 302 ---PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLN 378 (437)
T ss_dssp ---CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEE
T ss_pred ---hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEE
Confidence 257999999999999 6985 8999999999999999999999999999999999999999887778899999
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHhhcCCC-ccCceEEEC--CCCCCCCCchhhHHH
Q 006776 547 VTLVEGVPYSEELRKSLVLAVRKQIGAF-AAPDKIHWA--PGLPKTRSGKIMRRI 598 (631)
Q Consensus 547 v~~~~~~~~~~~~~~~i~~~~~~~l~~~-~~p~~i~~v--~~lP~t~sGKi~r~~ 598 (631)
|++.++........++++++|++.|+.+ .+|..|.++ ++||+|+ ||++|+.
T Consensus 379 v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 379 VEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp ECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9988765322233567888888888777 488888888 5999999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=2.5e-29 Score=260.21 Aligned_cols=237 Identities=16% Similarity=0.108 Sum_probs=173.8
Q ss_pred cCCCCCeEEEeCCCCCCCCceEEEcCchHHHHHHHH--HHHhcCCCCCcEEEEeccc-ceecchhHHHHHhhhcCceEEE
Q 006776 237 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT--FKYAFDYKPSDVYWCTADC-GWITGHSYVTYGPMLNGASVVV 313 (631)
Q Consensus 237 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~~~--~~~~~~~~~~d~~~~~~~~-~~~~g~~~~~~~~l~~G~~~vl 313 (631)
++++++++|+|||||||.||+|+++|+++....... ....+++.++|++++.+|+ .|..|.. ..+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~-~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAI-NKERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHH-HHHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHH-HHHHHHHcCC-EEE
Confidence 467899999999999999999999999965544422 2235678899999999999 7877764 4566688898 444
Q ss_pred ecCCCCCCChh-----------------------HHHHHHHHhCCcEEeecHHHHHHHHhcCCccccccCCCceeEEEEc
Q 006776 314 FEGAPTYPDSG-----------------------RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 370 (631)
Q Consensus 314 ~~~~~~~~~~~-----------------------~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~l~~lr~v~~~ 370 (631)
..+ +++. .+++.|+++++|++.++|+++..|++... ....++++||.+++|
T Consensus 166 ~~~----~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~--~~~~~~~~lr~i~~g 239 (369)
T 3hgu_A 166 SID----IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE--VVLQMKQSLAQITLG 239 (369)
T ss_dssp CCC----CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH--HHHHHHHHCSEEEEE
T ss_pred Ccc----CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh--hhccccCCeeEEEEC
Confidence 432 3555 77789999999999999999999987632 223457899999999
Q ss_pred cCCCCHhHHHHHH-HHhCCCCcceecccccccccceecccCCCCCCCCCC-CcCCC------cCCCceEEeCC-CCcccC
Q 006776 371 GEPINPSAWRWFF-NVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPG-SATFP------FFGVQPVIVDE-KGVEIE 441 (631)
Q Consensus 371 Ge~l~~~~~~~~~-~~~~~~~~~i~~~yg~tE~g~~~~~~~~~~~~~~~~-~~G~p------~~~~~~~i~d~-~g~~~~ 441 (631)
||++++++++++. +.++ ++++++.||+||+++++.. .++ ++|.| .++++++|+|+ +|++++
T Consensus 240 Ge~l~~~~~~~~~~~~~p--~~~v~~~YG~TE~~~~~~~--------~~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp 309 (369)
T 3hgu_A 240 GTELNLDEIKFIASEILP--DCEFSASYGSTSALGVSRS--------LLITSESQQVIYDSFSPFITYDVVDSITAQTVE 309 (369)
T ss_dssp SSCCCHHHHHHHHHHTCT--TSEEEEEEEEGGGTEEEEE--------CCBCTTCSSCEEECCTTTEEEEEECTTTCSBCC
T ss_pred CccCCHHHHHHHHHHhCC--CcEEEcccCchhhhcceec--------cccccCCCcccccCCCCCeEEEEECCCCCcCCC
Confidence 9999999999999 8885 4899999999999866532 222 48888 99999999998 999999
Q ss_pred CCcceeEEEecCCCcccccccCCchhhhhhccccCCCeEecCceEEEccC--C-------eEEEEeecCCeEecCce
Q 006776 442 GECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKD--G-------YHWLTGRVDDVINVSGH 509 (631)
Q Consensus 442 ~g~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~d--G-------~l~i~GR~dd~i~~~G~ 509 (631)
.|+.|||+|++.....+ +. .|+|||+++..+. | .+..++|.++..++.|.
T Consensus 310 ~G~~GEl~vt~l~~~~~-------------l~-----ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 310 YGERGNVIVTHLSPWAF-------------YP-----RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp TTCEEEEEEEEEETTEE-------------EE-----EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred CCCceEEEEEEcCcccc-------------cc-----cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 99999999998211110 11 3899999987653 3 35567788888877764
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.66 E-value=1.6e-16 Score=132.33 Aligned_cols=95 Identities=19% Similarity=0.294 Sum_probs=75.9
Q ss_pred eecCCeEecCceeechHHHHHHHhcCcccceEEEEeeecCCCCeeEEEEEEeCCCCCCcH----HHHHHHHHHHHhhcCC
Q 006776 498 GRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE----ELRKSLVLAVRKQIGA 573 (631)
Q Consensus 498 GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~i~~~~~~~l~~ 573 (631)
.|.||||+++|.+|+|.|||++|.+||+|.++++++++++..++.+.++|+..++...+. ++.++|++.+++.++
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~g- 79 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEIL- 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHS-
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhC-
Confidence 489999999999999999999999999999999999999989999999999988765543 345566666666654
Q ss_pred CccCceEEEC--CCCCCCCCchhhH
Q 006776 574 FAAPDKIHWA--PGLPKTRSGKIMR 596 (631)
Q Consensus 574 ~~~p~~i~~v--~~lP~t~sGKi~r 596 (631)
+|..+.++ ++|||| +||++|
T Consensus 80 --v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 80 --VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp --SCCEEEEECTTCSCCC----CCC
T ss_pred --CccceEEEcCCeecCC-CCCcch
Confidence 34456666 489999 799987
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.62 E-value=1e-15 Score=127.07 Aligned_cols=95 Identities=20% Similarity=0.331 Sum_probs=77.1
Q ss_pred eecCCeEecCceeechHHHHHHHhcCcccceEEEEeeecCCCCeeEEEEEEeCCCCCC-----cHHHHHHHHHHHHhhcC
Q 006776 498 GRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPY-----SEELRKSLVLAVRKQIG 572 (631)
Q Consensus 498 GR~dd~i~~~G~~i~~~eIE~~l~~~~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~i~~~~~~~l~ 572 (631)
||+||+|+++|.+++|.+||++|.+||+|.++++++++++..++.++++|++ ++... .+++.++|++++++.++
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999999999999888778999999998 65422 24567778888877764
Q ss_pred CCccCceEEECC--CCCCCCCchhhHH
Q 006776 573 AFAAPDKIHWAP--GLPKTRSGKIMRR 597 (631)
Q Consensus 573 ~~~~p~~i~~v~--~lP~t~sGKi~r~ 597 (631)
++..|.+++ +||+| |||++|.
T Consensus 80 ---~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 ---VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp ---SCCEEEEECTTCSCCC----CCCE
T ss_pred ---CceEEEEECCCCccCC-CCceEEE
Confidence 233788887 99999 9999874
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=99.05 E-value=4.5e-09 Score=111.49 Aligned_cols=133 Identities=13% Similarity=0.108 Sum_probs=85.3
Q ss_pred CCc---eeEEEEccCCCCHhHHHHHHHHhCCCCccee-cccccccccceecccCCCCCCCCCCCcCCC-cCC-CceEEeC
Q 006776 361 RKS---LRVLGSVGEPINPSAWRWFFNVVGDSRCPIS-DTWWQTETGGFMITPLPGAWPQKPGSATFP-FFG-VQPVIVD 434 (631)
Q Consensus 361 l~~---lr~v~~~Ge~l~~~~~~~~~~~~~~~~~~i~-~~yg~tE~g~~~~~~~~~~~~~~~~~~G~p-~~~-~~~~i~d 434 (631)
+++ +..++.||. ..=...++..+| ++++. ..|++||. .+.+...+. ..++..+.. +|+ +-.+.++
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g--~~p~~~~~Y~ASEg-~~gi~~~p~---~~~~~~~~~L~~~~~ffEFip 366 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCN--DLPLVSTTYGSSET-TFGINLDPL---CKPEDVSYTFMPNMSYFEFIP 366 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHT--TCCEECCEEECSSC-EEEECSCTT---SCGGGCCEEECTTSSEEEEEE
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcC--CCccccCccccccc-eeeeccCCC---CCcccCceeecCCcEEEEEEe
Confidence 466 555556662 333355666666 47777 99999994 333211111 111222221 222 2233443
Q ss_pred --CC--C-----cccCCCcceeEEEecCCCcccccccCCchhhhhhccccCCCeEecCceEEEcc----CCeEEEEeecC
Q 006776 435 --EK--G-----VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDK----DGYHWLTGRVD 501 (631)
Q Consensus 435 --~~--g-----~~~~~g~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~----dG~l~i~GR~d 501 (631)
+. . ..+..|+.+||+++. . .|.| + |++||+++++. ...+.|+||.+
T Consensus 367 ~~~~~~~~~v~l~eVe~G~~YelViTt--~---~GL~-----------R-----Yr~GD~v~v~~f~~~~p~i~f~gR~~ 425 (581)
T 4eql_A 367 MDGGDKNDVVDLEDVKLGCTYEPVVTN--F---AGLY-----------R-----MRVGDIVLVTGFYNNAPQFKFVRREN 425 (581)
T ss_dssp CSTTCCSSCEEGGGCCTTCEEEEEEEC--S---SSCC-----------S-----EECCEEEEEEEEETTEEEEEEEEETT
T ss_pred ccccCCCcEeCHHHcCCCceEEEEEee--c---ccee-----------e-----EEcCCEEEEcccCCCCcEEEEEEecC
Confidence 21 1 235678999999998 2 1222 2 99999999875 36799999999
Q ss_pred CeEecCceeechHHHHHHHhcC
Q 006776 502 DVINVSGHRIGTAEVESALVSH 523 (631)
Q Consensus 502 d~i~~~G~~i~~~eIE~~l~~~ 523 (631)
++|++.|+++...+||++|.+.
T Consensus 426 ~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 426 VVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp EEECSSSCCEEHHHHHHHHHHC
T ss_pred CEEEeeeeECCHHHHHHHHHHH
Confidence 9999999999999999999854
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.96 E-value=1.3e-08 Score=108.04 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=94.6
Q ss_pred CCcee---EEEEccCCCCHhHHHHHHHHhCCCCccee-cccccccccceecccCCCCCCCCCCCcCC-CcCC-CceEEe-
Q 006776 361 RKSLR---VLGSVGEPINPSAWRWFFNVVGDSRCPIS-DTWWQTETGGFMITPLPGAWPQKPGSATF-PFFG-VQPVIV- 433 (631)
Q Consensus 361 l~~lr---~v~~~Ge~l~~~~~~~~~~~~~~~~~~i~-~~yg~tE~g~~~~~~~~~~~~~~~~~~G~-p~~~-~~~~i~- 433 (631)
+++++ .++.||. ..-...++..+| +++++ ..|++||.- +.+...+. ..++..+. -+|+ +-.+.+
T Consensus 301 WPnlk~l~~~~tG~~---~~Y~~~l~~~~g--~~p~~~~~Y~ASEg~-~gi~~~p~---~~p~~~~~~L~p~~~ffEFIP 371 (609)
T 4b2g_A 301 WPNTKYLDVIVTGAM---AQYIPTLDYYSG--GLPLACTMYASSECY-FGLNLNPM---SKPSEVSYTIMPNMAYFEFLP 371 (609)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHT--SCCEECCEEECSSCE-EEECSCTT---SCGGGCCEEECTTSCEEEEEE
T ss_pred CCCCcEEEEEccCCh---HHHHHHHHHHcC--CCccccCccccccee-eeeecCCC---CCcccCceeecCCcEEEEEEe
Confidence 56644 4455552 333355666666 47776 999999953 33211111 11122222 1122 222333
Q ss_pred -CCC--------------CcccCCCcceeEEEecCCCcccccccCCchhhhhhccccCCCeEecCceEEEcc----CCeE
Q 006776 434 -DEK--------------GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDK----DGYH 494 (631)
Q Consensus 434 -d~~--------------g~~~~~g~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~----dG~l 494 (631)
++. ...++.|+.+||+++. . .|+| + |++||+++++. ...+
T Consensus 372 ~~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt--~---~GL~-----------R-----Yr~GD~v~v~~f~~~~p~i 430 (609)
T 4b2g_A 372 HEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITT--Y---AGLY-----------R-----YRVGDILRVTGFHNSAPQF 430 (609)
T ss_dssp GGGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEEC--T---TSCC-----------S-----EEEEEEEEEEEEETTEEEE
T ss_pred ccccccccccCCCCccccHhHcCCCCeEEEehhh--h---hhhh-----------h-----eecCCEEEEeecCCCCcEE
Confidence 211 1346788999999988 1 1232 2 99999999874 4789
Q ss_pred EEEeecCCeEecCceeechHHHHHHHhcC------c--ccceEEEEeeecCCCCeeEEEEEEeC
Q 006776 495 WLTGRVDDVINVSGHRIGTAEVESALVSH------P--QCAEAAVVGVEHEVKGQGIYAFVTLV 550 (631)
Q Consensus 495 ~i~GR~dd~i~~~G~~i~~~eIE~~l~~~------~--~V~~~~vv~~~~~~~~~~~~~~v~~~ 550 (631)
.|+||.+++|++.|+++.+.+||++|.+. . .|.|..+..-. ......-+.|+.+.
T Consensus 431 ~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~-~~~p~Hyv~~wEl~ 493 (609)
T 4b2g_A 431 HFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADT-KTIPGHYVIYWELL 493 (609)
T ss_dssp EEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEEC-SSSSCEEEEEEEEE
T ss_pred EEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCC-CCCCCcEEEEEEEe
Confidence 99999999999999999999999999732 2 35566554221 12222345555554
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.86 E-value=2.5e-08 Score=105.42 Aligned_cols=161 Identities=12% Similarity=0.062 Sum_probs=95.6
Q ss_pred CCceeEE--EEccCCCCHhHHHHHHHHhCCCCccee-cccccccccceecccCCCCCCCCCCCcCC-CcCCC-ceEEe--
Q 006776 361 RKSLRVL--GSVGEPINPSAWRWFFNVVGDSRCPIS-DTWWQTETGGFMITPLPGAWPQKPGSATF-PFFGV-QPVIV-- 433 (631)
Q Consensus 361 l~~lr~v--~~~Ge~l~~~~~~~~~~~~~~~~~~i~-~~yg~tE~g~~~~~~~~~~~~~~~~~~G~-p~~~~-~~~i~-- 433 (631)
+++++.| +.+|. + ..-...++..+| ++++. ..|++||. .+.+...+. ..++..+. .+|+. -.+.+
T Consensus 301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g--~~p~~~~~Y~ASEg-~~gi~~~p~---~~~~~~~~~L~p~~~ffEFiP~ 372 (581)
T 4epl_A 301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAG--DLPLVSHDYGSSEG-WIAANVTPR---LSPEEATFAVIPNLGYFEFLPV 372 (581)
T ss_dssp CTTCCCEEEECSGG-G-GGGHHHHHHHHT--TSCEEECCEEETTE-EEEECCCTT---SCTTTCCEEECTTSCEEEEEEC
T ss_pred CCCCceEEEEeCCC-h-HHHHHHHHHHcC--CCccccCceeccce-eeeeecCCC---CCccccceeecCCcEEEEEEec
Confidence 5677533 34442 2 222355666666 47777 99999995 333321111 12222222 22322 22333
Q ss_pred CCCC---------cccCCCcceeEEEecCCCcccccccCCchhhhhhccccCCCeEecCceEEEccC----CeEEEEeec
Q 006776 434 DEKG---------VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKD----GYHWLTGRV 500 (631)
Q Consensus 434 d~~g---------~~~~~g~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~d----G~l~i~GR~ 500 (631)
|+.+ ..++.|+.+||+++. . .|. ++ |++||.++++.- ..+.|+||.
T Consensus 373 ~~~~~~~~~~v~l~eve~G~~YelviTt--~---~GL-----------~R-----Yr~GD~v~v~g~~~~~p~~~~~gR~ 431 (581)
T 4epl_A 373 SETGEGEEKPVGLTQVKIGEEYEVVITN--Y---AGL-----------YR-----YRLGDVVKVIGFYNNTPQLKFICRR 431 (581)
T ss_dssp -------CCCEEGGGCCTTCEEEEEEES--T---TSC-----------SS-----EEEEEEEEEEEEETTEEEEEEEEET
T ss_pred ccccCCCCceeeHHHcCCCCeEEEEEee--c---cce-----------ee-----EEcCCEEEEecccCCCcEEEEEeec
Confidence 3211 246788999999998 1 122 22 999999998752 579999999
Q ss_pred CCeEecCceeechHHHHHHHhcC------c--ccceEEEEeeecCCCCeeEEEEEEeCC
Q 006776 501 DDVINVSGHRIGTAEVESALVSH------P--QCAEAAVVGVEHEVKGQGIYAFVTLVE 551 (631)
Q Consensus 501 dd~i~~~G~~i~~~eIE~~l~~~------~--~V~~~~vv~~~~~~~~~~~~~~v~~~~ 551 (631)
+++|++.|+++.+.+||++|.+. . .|.|..+..-. ....-.-+.|+.+..
T Consensus 432 ~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~-~~~p~hyv~~wE~~~ 489 (581)
T 4epl_A 432 NLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDV-STDPGHYAIFWEISG 489 (581)
T ss_dssp TCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEEC-SSSSCEEEEEEEESS
T ss_pred CCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCC-CCCCCcEEEEEeecC
Confidence 99999999999999999998742 2 36676665422 112224455567643
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=90.50 E-value=1.7 Score=44.63 Aligned_cols=97 Identities=14% Similarity=0.013 Sum_probs=75.9
Q ss_pred CeeEEEEEcCCC-C--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCC--hHHHHHHHHHHHhCCEEEecCCC
Q 006776 69 DKVAIYWEANDP-G--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVFAG 143 (631)
Q Consensus 69 ~~~A~~~~~~~~-~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~--~~~~v~~lA~~~~G~v~v~l~~~ 143 (631)
+.+|.+...... + ....+|.+.+...+..++..+...|+.++|++..++|-+ ...+..+++++..|+..++.++
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~- 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA- 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-
Confidence 677876554321 1 234689999998888888888889999999999999753 4445567888999999887765
Q ss_pred CCHHHHHHHHHhcCceEEEEeCC
Q 006776 144 FSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 144 ~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
..++.+...|++.++.+++....
T Consensus 165 ~~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 165 GNSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHH
T ss_pred CCHHHHHHHHHHHCCCEEEECHH
Confidence 57899999999999999987754
No 43
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=89.78 E-value=2 Score=44.12 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=76.0
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCC--hHHHHHHHHHHHhCCEEEecC
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVF 141 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~--~~~~v~~lA~~~~G~v~v~l~ 141 (631)
.++.+|.+..... .+ ....+|.+.+...+..++..+...|+.++|++...+|.. ...+..+++++..|+..++++
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 4567776644332 11 234689999988888888888889999999999999863 344556788899999988766
Q ss_pred CCCCHHHHHHHHHhcCceEEEEeCC
Q 006776 142 AGFSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 142 ~~~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
. ...+.+...|++.++.+++....
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHH
Confidence 5 58899999999999999987764
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=89.33 E-value=2.1 Score=43.96 Aligned_cols=99 Identities=14% Similarity=0.119 Sum_probs=75.6
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCC--hHHHHHHHHHHHhCCEEEecC
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVF 141 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~--~~~~v~~lA~~~~G~v~v~l~ 141 (631)
.++.+|.+..... .+ ....+|.+.+...+..++..+...|+.++|++...+|.+ ...+..+++++..|+..+++.
T Consensus 90 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 169 (443)
T 2y4o_A 90 PREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS 169 (443)
T ss_dssp CGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred ChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence 4566665544321 12 234689999988888888888889999999999999863 344556788899999988776
Q ss_pred CCCCHHHHHHHHHhcCceEEEEeCC
Q 006776 142 AGFSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 142 ~~~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
+ ...+.+...|++.++.+++....
T Consensus 170 ~-~~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 170 G-GQTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred C-CCHHHHHHHHHHhCCcEEEECHH
Confidence 5 58899999999999999987764
No 45
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=83.57 E-value=4.4 Score=40.36 Aligned_cols=99 Identities=10% Similarity=0.092 Sum_probs=68.0
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCC--hHHHHHHHHHHHhCCEEEecC
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVF 141 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~--~~~~v~~lA~~~~G~v~v~l~ 141 (631)
.++.+|.+..... .+ ....+|.+.+...+..++..+...|+.++|++..++|-+ .......+++...|+.+++
T Consensus 89 ~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~-- 166 (369)
T 3hgu_A 89 PADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS-- 166 (369)
T ss_dssp CTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC--
T ss_pred CccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC--
Confidence 3566666654432 11 234678888888888777777888999999999999863 2334445566889995444
Q ss_pred CCCCHH-----------------------HHHHHHHhcCceEEEEeCCc
Q 006776 142 AGFSSD-----------------------SLAQRIMDCKPKVVITSNAV 167 (631)
Q Consensus 142 ~~~~~~-----------------------~l~~~l~~~~~~~ii~~~~~ 167 (631)
..+.+. .+...+++.++.++++....
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~ 215 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPV 215 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHH
Confidence 344555 66678899999998877643
No 46
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=80.86 E-value=18 Score=37.60 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=70.7
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCh-HHHHHHHHHHHhCCEEEecCC
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM-ELPIAMLACARIGAVHSVVFA 142 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~-~~~v~~lA~~~~G~v~v~l~~ 142 (631)
.++.+|++..... .| ....+|.+.+...+..+. ...|+.++|++...+|-.- ..+..+++++..|+..+..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCK---ESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHH---HHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHH---HhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 5678887765432 11 245689888877665544 3468999999999998653 33445678888999877765
Q ss_pred CCCHHHHHHHHHhcCceEEEEeCC
Q 006776 143 GFSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 143 ~~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
.+.++.+...+++.++.++++...
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~ 260 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQ 260 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHH
T ss_pred CCCHHHHHHHHHHcCCcEEEchHH
Confidence 488999999999999999987754
No 47
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=72.87 E-value=31 Score=36.18 Aligned_cols=96 Identities=13% Similarity=0.036 Sum_probs=70.4
Q ss_pred CCCeeEEEEEcCC-C--CceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHH---HHHHHHHhCCEEEec
Q 006776 67 LGDKVAIYWEAND-P--GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPI---AMLACARIGAVHSVV 140 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~--~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v---~~lA~~~~G~v~v~l 140 (631)
.++.+|++..... . -....+|.+.+...+...+. ..|+.++|++...+|.+..+-. .+++++..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 4677887755432 1 12456899988777665544 4589999999999986654433 378888899887766
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEeCC
Q 006776 141 FAGFSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 141 ~~~~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
+ .+.+..+...+++.++.++.+...
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~ 290 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPS 290 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHH
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechH
Confidence 5 478899999999999999988764
No 48
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=72.37 E-value=38 Score=35.47 Aligned_cols=96 Identities=15% Similarity=0.061 Sum_probs=69.9
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHH--H-HHHHHHHhCCEEEec
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP--I-AMLACARIGAVHSVV 140 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~--v-~~lA~~~~G~v~v~l 140 (631)
.++.+|++..... .| ....+|.+.+...+..... ..++.++|++...+|-+-.+- . .+++++..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 4677887755432 11 2457899888776655443 457899999999998664332 2 478889999988766
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEeCC
Q 006776 141 FAGFSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 141 ~~~~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
+ .+.++.+...+++.++.+++....
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~ 281 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPP 281 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHH
Confidence 4 478999999999999999987754
No 49
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=70.84 E-value=17 Score=38.24 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=68.7
Q ss_pred CeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHH--HHHHHHHHHhCCEEEecCCC
Q 006776 69 DKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL--PIAMLACARIGAVHSVVFAG 143 (631)
Q Consensus 69 ~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~--~v~~lA~~~~G~v~v~l~~~ 143 (631)
+.+|++..... .| ....+|.+.+...+......+...++.++|++..++|-.-.+ ...+++++ .|+..+.++ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 77887755432 11 245689998877666554443336889999999988865433 23356777 998877765 5
Q ss_pred CCHHHHHHHHHhcCceEEEEeCC
Q 006776 144 FSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 144 ~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
+.++.+...+++.++.+++....
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~ 292 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPT 292 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHH
Confidence 88999999999999999987654
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=70.42 E-value=40 Score=35.09 Aligned_cols=95 Identities=16% Similarity=0.184 Sum_probs=66.8
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHH--HHHHHHHhCCEEEecC
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPI--AMLACARIGAVHSVVF 141 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v--~~lA~~~~G~v~v~l~ 141 (631)
.++.+|++..... .+ ....+|.+.+...+..++. ..++.++|++...+|-.-.+-. .+++++ .|+..+.+
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~- 242 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAS---TIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM- 242 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHH---HSCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHH---hcCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-
Confidence 3577777654332 11 2456899888777665544 4589999999999986643332 244555 88887766
Q ss_pred CCCCHHHHHHHHHhcCceEEEEeCC
Q 006776 142 AGFSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 142 ~~~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
+.+.++.+...+++.++.++.+...
T Consensus 243 ~~~~~~~~~~~i~~~~~t~~~~~P~ 267 (517)
T 3r44_A 243 PQFDATKVWSLIVEERVCIGGAVPA 267 (517)
T ss_dssp SSCCHHHHHHHHHHTTCCEEEECHH
T ss_pred CCCCHHHHHHHHHHhCCeEEEeHHH
Confidence 4589999999999999999987754
No 51
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=69.15 E-value=22 Score=37.44 Aligned_cols=98 Identities=9% Similarity=0.101 Sum_probs=69.1
Q ss_pred CCeeEEEEEcCC-C--CceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCh-HHHHHHHHHHHhCCEEEecCCC
Q 006776 68 GDKVAIYWEAND-P--GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM-ELPIAMLACARIGAVHSVVFAG 143 (631)
Q Consensus 68 ~~~~A~~~~~~~-~--~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~-~~~v~~lA~~~~G~v~v~l~~~ 143 (631)
++.+|++..... . -....+|.+.+...+......+...++.++|++..++|-.- ..+..+++++..|+..+.+. .
T Consensus 189 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~ 267 (550)
T 3rix_A 189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-R 267 (550)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-S
T ss_pred CCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-C
Confidence 466777654331 1 12456888888766555444443467889999999998653 33455677888999877764 5
Q ss_pred CCHHHHHHHHHhcCceEEEEeCC
Q 006776 144 FSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 144 ~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
+.++.+...+++.++.++++...
T Consensus 268 ~~~~~~~~~i~~~~~t~~~~~P~ 290 (550)
T 3rix_A 268 FEEELFLRSLQDYKIQSALLVPT 290 (550)
T ss_dssp CCHHHHHHHHHHTTCSEEEECHH
T ss_pred CCHHHHHHHHHHcCCeEEEeCcH
Confidence 88999999999999999987754
No 52
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=66.72 E-value=26 Score=36.38 Aligned_cols=97 Identities=12% Similarity=0.136 Sum_probs=69.6
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCh-HHHHHHHHHHHhCCEEEecCC
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM-ELPIAMLACARIGAVHSVVFA 142 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~-~~~v~~lA~~~~G~v~v~l~~ 142 (631)
.++.+|++..... .+ ....+|.+.+...+...+ ...++.++|++..++|-+. ..+..+++++..|+..+.+++
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHH---HHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 4677777654432 11 245689888876655443 4568999999999998653 334567888999998887765
Q ss_pred C--CCHHHHHHHHHhcCceEEEEeCC
Q 006776 143 G--FSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 143 ~--~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
. ..++.+...+++.++.+++....
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~ 244 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPS 244 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHH
Confidence 3 57888999999999999887654
No 53
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=65.99 E-value=51 Score=34.13 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=64.8
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChH-HHHHHHHHHHhCCEEEecCC
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLME-LPIAMLACARIGAVHSVVFA 142 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~-~~v~~lA~~~~G~v~v~l~~ 142 (631)
.++.+|++..... .+ ....+|.+.+...+..++. ..++.++|++..++|-.-. .+..++.+...|+..+.+.
T Consensus 158 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~- 233 (509)
T 3ivr_A 158 GAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA- 233 (509)
T ss_dssp CTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec-
Confidence 4567776644321 12 2356898888766655443 4689999999999986533 2333444444444444444
Q ss_pred CCCHHHHHHHHHhcCceEEEEeCCc
Q 006776 143 GFSSDSLAQRIMDCKPKVVITSNAV 167 (631)
Q Consensus 143 ~~~~~~l~~~l~~~~~~~ii~~~~~ 167 (631)
.+.++.+...+++.++.+++.....
T Consensus 234 ~~~~~~~~~~i~~~~~t~~~~~p~~ 258 (509)
T 3ivr_A 234 KFDPAQAARDIEAHKVTVMAEFAPM 258 (509)
T ss_dssp SCCHHHHHHHHHHHTCCEEEEETTH
T ss_pred ccCHHHHHHHHHHHCCcEEEecHHH
Confidence 6889999999999999999887654
No 54
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=64.50 E-value=61 Score=33.87 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=68.2
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHH-HHHHHHHHHhCCEEEecCC
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL-PIAMLACARIGAVHSVVFA 142 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~-~v~~lA~~~~G~v~v~l~~ 142 (631)
.++.+|++..... .+ ....+|.+.+...+.... .....++.++|++...+|-.-.+ ...+++++..|+..+...+
T Consensus 174 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~ 252 (541)
T 1v25_A 174 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP 252 (541)
T ss_dssp CTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTT
T ss_pred CCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCC
Confidence 4567776644321 12 235688888754433210 11245788999999999864332 2346778889999888777
Q ss_pred CCCHHHHHHHHHhcCceEEEEeCCc
Q 006776 143 GFSSDSLAQRIMDCKPKVVITSNAV 167 (631)
Q Consensus 143 ~~~~~~l~~~l~~~~~~~ii~~~~~ 167 (631)
.+.++.+...+++.++.+++.....
T Consensus 253 ~~~~~~~~~~i~~~~~t~~~~~P~~ 277 (541)
T 1v25_A 253 RLDPASLVELFDGEGVTFTAGVPTV 277 (541)
T ss_dssp CCSHHHHHHHHHHTTCCEEEECHHH
T ss_pred CCCHHHHHHHHHhcCeeEEecchHH
Confidence 7899999999999999999877643
No 55
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=62.62 E-value=45 Score=34.95 Aligned_cols=105 Identities=10% Similarity=-0.088 Sum_probs=69.2
Q ss_pred CCCCCeEEEeCCC-CCCCCceEEEcCchHHHHHH--HHHHHhcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEEe
Q 006776 238 DAEDPLFLLYTSG-STGKPKGVLHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 314 (631)
Q Consensus 238 ~~~~~~~i~~TSG-TTG~PK~v~~t~~~~l~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~ 314 (631)
.++.+|++....+ ..+..+ .+|.+.+..... .......+++++|++...++-+.- ....+++++..|+..+..
T Consensus 32 ~p~~~A~~~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEFPE--SMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID--YVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCCCSSCS--EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCcccccccc--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHhCCEEEcc
Confidence 3677777765322 122223 346555332221 222234689999999888776543 345678999999998887
Q ss_pred cCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHH
Q 006776 315 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM 349 (631)
Q Consensus 315 ~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~ 349 (631)
+.. ...+++..+++..+++++.+.+.....+.
T Consensus 108 ~~~---~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 108 NPM---YKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp CTT---CCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred CCC---CCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 643 37788999999999999998877665543
No 56
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=61.81 E-value=47 Score=34.45 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=69.4
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChH-HHHHHHHHHHhCCEEEecCC
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLME-LPIAMLACARIGAVHSVVFA 142 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~-~~v~~lA~~~~G~v~v~l~~ 142 (631)
.++.+|++..... .+ ....+|.+.+...+..++ ...++.++|++..++|-+.. .+..+++++..|+..+.+..
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWIC---ADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHH---HHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHH---HhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 4567777654332 11 245689888876655443 44688999999999986543 34557888999998877654
Q ss_pred C--CCHHHHHHHHHhcCceEEEEeCC
Q 006776 143 G--FSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 143 ~--~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
. ..++.+...+++.++.+++....
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~ 243 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPS 243 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHH
Confidence 3 57888999999999999887654
No 57
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=60.31 E-value=50 Score=34.14 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=68.9
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCC--CCCCEEEEEccCChHHH--HHHHHHHHhCCEEEe
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGV--KKGDAVIIYLPMLMELP--IAMLACARIGAVHSV 139 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv--~~gd~V~i~~~n~~~~~--v~~lA~~~~G~v~v~ 139 (631)
.|+.+|++..... .+ ....+|.+.+...+..++. ..|+ .++|++...+|-.-.+- ..+++++..|+..+.
T Consensus 151 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~ 227 (504)
T 1t5h_X 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV 227 (504)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEE
T ss_pred CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEe
Confidence 4677887755432 11 2456899888766655433 4577 78999999888654432 357888899998887
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEeCC
Q 006776 140 VFAGFSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 140 l~~~~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
.+. +.++.+...+++.++.+++....
T Consensus 228 ~~~-~~~~~~~~~i~~~~~t~~~~~P~ 253 (504)
T 1t5h_X 228 VEE-FRPVDALQLVQQEQVTSLFATPT 253 (504)
T ss_dssp CSS-CCHHHHHHHHHHHTCCEEECCHH
T ss_pred CCC-CCHHHHHHHHHHhCCeEEEeChH
Confidence 654 78899999999999999987654
No 58
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=58.92 E-value=40 Score=35.73 Aligned_cols=96 Identities=11% Similarity=0.096 Sum_probs=69.6
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHH--HHHHHHHHhCCEEEecC
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP--IAMLACARIGAVHSVVF 141 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~--v~~lA~~~~G~v~v~l~ 141 (631)
.++.+|++..... .+ ....+|.+.+...+..++. ..++.++|++..++|-.-.+- ..+++++..|+..+.+.
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 5678887765432 11 2457899988777665544 468999999999998765443 23788899999888776
Q ss_pred CCC---CHHHHHHHHHhcCceEEEEeC
Q 006776 142 AGF---SSDSLAQRIMDCKPKVVITSN 165 (631)
Q Consensus 142 ~~~---~~~~l~~~l~~~~~~~ii~~~ 165 (631)
+.. .+..+...+++.++.++.+..
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p 268 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPN 268 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECT
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCCh
Confidence 532 577888999999999887654
No 59
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=57.91 E-value=1.1e+02 Score=32.54 Aligned_cols=96 Identities=13% Similarity=0.032 Sum_probs=68.9
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHH---HHHHHHHhCCEEEec
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPI---AMLACARIGAVHSVV 140 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v---~~lA~~~~G~v~v~l 140 (631)
.++.+|++..... .| ....+|.+.+...+..... ..++.++|++..++|-+..+-. .+++++..|+..+..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE---ICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHH---hcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 4577887654332 11 2457899888766665444 4478999999999986544332 477888889887766
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEeCC
Q 006776 141 FAGFSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 141 ~~~~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
.. .....+...+++.++.++.+...
T Consensus 259 ~~-~~~~~~~~~i~~~~~t~~~~~P~ 283 (617)
T 3rg2_A 259 AD-PSATLCFPLIEKHQVNVTALVPP 283 (617)
T ss_dssp SS-CCHHHHHHHHHHTTCCEEEECHH
T ss_pred CC-CCHHHHHHHHHHhCCcEEEcchH
Confidence 54 68888999999999999987754
No 60
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=57.79 E-value=67 Score=33.89 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=66.4
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHH--HHHHHHHHhCCEEEecC
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP--IAMLACARIGAVHSVVF 141 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~--v~~lA~~~~G~v~v~l~ 141 (631)
.++.+|++..... .+ ....+|.+ +...... ......|+.++|++..++|.+-.+- ..+++++..|+..+...
T Consensus 204 ~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~ 280 (570)
T 3c5e_A 204 GSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAK--MDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHL 280 (570)
T ss_dssp BTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHH--HHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEEC
T ss_pred CCCCcEEEEECCCCCCCCCEEEechH-HHHhhhh--hhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEec
Confidence 4577787755432 11 23468887 4331111 1224568999999999988765433 34678888998877765
Q ss_pred C-CCCHHHHHHHHHhcCceEEEEeCC
Q 006776 142 A-GFSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 142 ~-~~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
. .+.++.+...+++.++.+++....
T Consensus 281 ~~~~~~~~~~~~i~~~~~t~~~~~P~ 306 (570)
T 3c5e_A 281 LPKFDPLVILKTLSSYPIKSMMGAPI 306 (570)
T ss_dssp CSSCCHHHHHHHHHHSCCCEEEECHH
T ss_pred CCCCCHHHHHHHHHHhCCeEEeccHH
Confidence 3 788999999999999999987653
No 61
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=55.79 E-value=1.5e+02 Score=28.76 Aligned_cols=64 Identities=11% Similarity=0.053 Sum_probs=44.3
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCC-------CCHHHHHHHHHhcCceEEEEeCCcccCCcc
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG-------FSSDSLAQRIMDCKPKVVITSNAVKRGPKA 173 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~-------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 173 (631)
+++||.|.+..|....+ ..++...|+.++.++.. ...+.+...+++.++++|+........+..
T Consensus 106 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~ 176 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYA 176 (391)
T ss_dssp SCTTCEEEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBC
T ss_pred CCCCCeEEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcc
Confidence 56899988766655543 34566788877776653 678999999986788888776554444444
No 62
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=53.31 E-value=70 Score=32.36 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=47.0
Q ss_pred CCCCCEEEEEccCChHHHHHHH-HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~l-A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+++||.|.+.-+......-.+- .+.+.|+.++.++.+ ..+.+...++. +.++|++.......+...++..+
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl~~i 189 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLETISNPQLQVADLEAL 189 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHH
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEECCCCCCCeecCHHHH
Confidence 6789998776665544443332 566788888887765 67777777754 67888877655555565665443
No 63
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=52.80 E-value=47 Score=35.87 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=66.0
Q ss_pred CCCCCeEEEeCCCCCCCCceEEEcCchHHHHH---HHHHHHhcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEEe
Q 006776 238 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 314 (631)
Q Consensus 238 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~---~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~ 314 (631)
.++.+|++.... .+|. ...+|.+.+.... +..+....+++++|++...++...- ....+++++..|+..+..
T Consensus 95 ~pd~~Al~~~~~-~~~~--~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e--~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPGQ--GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE--AIITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEECS-STTC--CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH--HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEcC-CCCc--eEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEee
Confidence 366777765422 2222 2346766643322 2222225689999999988876643 346678999999988887
Q ss_pred cCCCCCCChhHHHHHHHHhCCcEEeecHH
Q 006776 315 EGAPTYPDSGRSWDIVDKYKVTIFYTAPT 343 (631)
Q Consensus 315 ~~~~~~~~~~~~~~~i~~~~vt~l~~~P~ 343 (631)
... ..++++...+++.++.++++.+.
T Consensus 170 ~~~---~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 170 FAG---FSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp CTT---SCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCC---CCHHHHHHHHHhcCCeEEEEccc
Confidence 643 47889999999999999988653
No 64
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=50.40 E-value=93 Score=32.69 Aligned_cols=97 Identities=9% Similarity=0.034 Sum_probs=68.2
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCh-HHHHHHHHHHHhCCEEEecCC
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM-ELPIAMLACARIGAVHSVVFA 142 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~-~~~v~~lA~~~~G~v~v~l~~ 142 (631)
.++.+|++..... .+ ....+|.+.+..... .....++.++|++..++|-+. -....+++++..|+..+.+..
T Consensus 212 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG 287 (570)
T ss_dssp CTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHS----SCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred CCCCeEEEEECCcCCCCCeEEEEecHHHHHHHH----hhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 4677887754331 11 235688887743322 223458899999999998753 345567788889988777654
Q ss_pred -CCCHHHHHHHHHhcCceEEEEeCCc
Q 006776 143 -GFSSDSLAQRIMDCKPKVVITSNAV 167 (631)
Q Consensus 143 -~~~~~~l~~~l~~~~~~~ii~~~~~ 167 (631)
.+.+..+...+++.++.++......
T Consensus 288 ~~~~~~~~~~~i~~~~vt~~~~~P~~ 313 (570)
T 4gr5_A 288 QNPDPLEIGELVARHGVTMLQLSASL 313 (570)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEEHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEecHHH
Confidence 5788999999999999999887643
No 65
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=50.04 E-value=1.3e+02 Score=30.84 Aligned_cols=95 Identities=17% Similarity=0.197 Sum_probs=67.1
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChH--HHHHHHHHHHhCCEEEecC
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLME--LPIAMLACARIGAVHSVVF 141 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~--~~v~~lA~~~~G~v~v~l~ 141 (631)
.++.+|++..... .+ ....+|.+.+...+..++..+ ++.++|++...+|..-. ++..+++++..|+..+.+
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~- 228 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL- 228 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC-
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC-
Confidence 4667777654432 11 245789999887777655544 78899999988886433 233578889999987766
Q ss_pred CCCCHHHHHHHHHhcCceEEEEeCC
Q 006776 142 AGFSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 142 ~~~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
+.+..+.+...+ +.++.+++....
T Consensus 229 ~~~~~~~~~~~i-~~~~t~~~~~P~ 252 (505)
T 3nyq_A 229 GRFSTEGAAREL-NDGATMLFGVPT 252 (505)
T ss_dssp SSCCHHHHHHHH-TTTCCEEEECHH
T ss_pred CCCChHHHHHHH-hhCCeEEEehHH
Confidence 457888888888 678888887654
No 66
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=49.50 E-value=49 Score=34.56 Aligned_cols=99 Identities=9% Similarity=0.029 Sum_probs=66.1
Q ss_pred CCCCCeEEEeCCCCCCCCceEEEcCchHHHHHH--HHHHHhcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEEec
Q 006776 238 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 315 (631)
Q Consensus 238 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~ 315 (631)
.++.++++.. .+| -.+|.+.+..... .......+++++|++...++-+.- ....+++++..|+..+..+
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~la~~~~Gav~vpl~ 105 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE--FVLAFLGASHRGAIITAAN 105 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCEEeccC
Confidence 4677776542 222 2356665432222 122234689999999888776543 3466789999999988876
Q ss_pred CCCCCCChhHHHHHHHHhCCcEEeecHHHHHHH
Q 006776 316 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 348 (631)
Q Consensus 316 ~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l 348 (631)
.. ...+++..+++..++.++.+.+.....+
T Consensus 106 ~~---~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 106 PF---STPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp TT---CCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred CC---CCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 43 3788899999999999999877554443
No 67
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=49.35 E-value=53 Score=35.41 Aligned_cols=96 Identities=10% Similarity=-0.060 Sum_probs=64.5
Q ss_pred CCCCeEEEeCCCCCCCCceEEEcCchHHHHHH--HHHHHhcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEEecC
Q 006776 239 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEG 316 (631)
Q Consensus 239 ~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~~ 316 (631)
++.+|++... ..+|. .-.+|.+.+..... .......+++++|++...++...-+ ...+++++..|+..+....
T Consensus 90 pd~~Al~~~~-~~~~~--~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~--vva~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 90 GDRTAIIWEG-DDTSQ--SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA--AVAMLACARIGAVHSVIFG 164 (652)
T ss_dssp TTSEEEEEEC-SSTTC--EEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEECCT
T ss_pred CCceEEEEEc-CCCCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHcCcEEEecCC
Confidence 6777776532 22222 23467666433222 1222346899999998888766433 4667899999999888764
Q ss_pred CCCCCChhHHHHHHHHhCCcEEeecH
Q 006776 317 APTYPDSGRSWDIVDKYKVTIFYTAP 342 (631)
Q Consensus 317 ~~~~~~~~~~~~~i~~~~vt~l~~~P 342 (631)
. ..++++..++++.++.++++..
T Consensus 165 ~---~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 165 G---FSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp T---SCHHHHHHHHHHHTCSEEEEES
T ss_pred C---CCHHHHHHHHHhcCCCEEEEcC
Confidence 3 4788999999999999988754
No 68
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=48.97 E-value=65 Score=31.27 Aligned_cols=65 Identities=12% Similarity=-0.037 Sum_probs=47.7
Q ss_pred HHHCC-CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCC
Q 006776 102 LKDIG-VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 102 L~~~G-v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
+.+.| +++|+.|.+....+-....+.+||.+.|.-++.+-|...+..-...++..+++++++...
T Consensus 62 a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 62 AEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34556 488988655555677778888888899987776656555556667889999999998753
No 69
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=48.37 E-value=63 Score=34.18 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=65.1
Q ss_pred CCCCCeEEEeCCCCCCCCceEEEcCchHHHHH--HHHHHHhcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEEec
Q 006776 238 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 315 (631)
Q Consensus 238 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~--~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~ 315 (631)
.++.+|++.... .|. ...+|.+.+.... ........+++++|++...++-..- .+..+++++..|+..+...
T Consensus 69 ~pd~~Al~~~~~--~g~--~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e--~~~~~lA~~~~Gav~vpl~ 142 (580)
T 3etc_A 69 SPEKLAMIWCDD--YGN--EKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD--FWYCMLGLHKLGAIAVPAT 142 (580)
T ss_dssp CTTCEEEEEEES--SSC--EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH--HHHHHHHHHHHTCEEEECC
T ss_pred CCCCEEEEEEcC--CCC--EeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH--HHHHHHHHHhCCEEEEeCC
Confidence 578888776532 122 3456666533222 1222235689999999888776543 3456789999999988765
Q ss_pred CCCCCCChhHHHHHHHHhCCcEEeecH
Q 006776 316 GAPTYPDSGRSWDIVDKYKVTIFYTAP 342 (631)
Q Consensus 316 ~~~~~~~~~~~~~~i~~~~vt~l~~~P 342 (631)
.. ...+++..+++..++.++.+.+
T Consensus 143 ~~---~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 143 HM---LKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TT---CCHHHHHHHHHHHTCCEEEEES
T ss_pred cc---CCHHHHHHHHHhcCCCEEEEec
Confidence 43 3788899999999999998754
No 70
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=48.01 E-value=72 Score=33.57 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=66.1
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChH-HHHHHHHHHHhCCEEEecCC
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLME-LPIAMLACARIGAVHSVVFA 142 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~-~~v~~lA~~~~G~v~v~l~~ 142 (631)
.++.+|++..... .| ....+|.+.+...+..++ ...++.++|++..++|-+.. .+..++.++..|+..+.+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 256 (563)
T 1amu_A 180 KSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFE---NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILK 256 (563)
T ss_dssp CTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHH---HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcCh
Confidence 4567777654331 11 245688888865544332 34689999999999876533 33456778888988777654
Q ss_pred C--CCHHHHHHHHHhcCceEEEEeCC
Q 006776 143 G--FSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 143 ~--~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
. .....+...+++.++.++.....
T Consensus 257 ~~~~~~~~~~~~i~~~~~t~~~~~P~ 282 (563)
T 1amu_A 257 DTINDFVKFEQYINQKEITVITLPPT 282 (563)
T ss_dssp HHHTCHHHHHHHHHHTTCCEEEECHH
T ss_pred HhhcCHHHHHHHHHHcCCcEEEeCHH
Confidence 2 57788999999999999887654
No 71
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=47.49 E-value=92 Score=24.23 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=36.6
Q ss_pred hHHHHHHHhcCcccceEEEEeeecCCCCeeEEEEEEeCCCCCCcH--HHHHHHHHHHHhhcC
Q 006776 513 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE--ELRKSLVLAVRKQIG 572 (631)
Q Consensus 513 ~~eIE~~l~~~~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~i~~~~~~~l~ 572 (631)
..+|++++.++|+|.++-=+-+......-.+-+-|++.+..+..+ ++..+|.+.|++.++
T Consensus 12 ~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~ 73 (107)
T 2zzt_A 12 YDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRD 73 (107)
T ss_dssp HHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 467888899999998765554443211223445556655443222 567778888887775
No 72
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=47.40 E-value=38 Score=24.95 Aligned_cols=47 Identities=26% Similarity=0.193 Sum_probs=31.8
Q ss_pred hHHHHHHHhcCcccceEEEEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhcC
Q 006776 513 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 572 (631)
Q Consensus 513 ~~eIE~~l~~~~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~ 572 (631)
..++++.|.++|+|.+|..+. +.....+.|..++ .+++.+.+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vt-----G~~D~ll~v~~~d--------~~~l~~~i~~~l~ 61 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVY-----GEYDLIVKVETDT--------LKDLDQFITEKIR 61 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECB-----SSCSEEEEEEESS--------HHHHHHHHHTTGG
T ss_pred HHHHHHHHhCCCCeeEEEEEc-----ccCCEEEEEEECC--------HHHHHHHHHHHhc
Confidence 478999999999999998873 2233555555532 4556666665554
No 73
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=47.28 E-value=1e+02 Score=30.00 Aligned_cols=71 Identities=13% Similarity=-0.015 Sum_probs=45.9
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCC----CCHHHHHHHHHhcCceEEEEeCCcccCCcccccHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG----FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 178 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~----~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~ 178 (631)
.++||.|.+..+....+.-...++...|+.++.++.+ ...+.+...+.. ++++|+.+......+...++..
T Consensus 86 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~ 160 (384)
T 1eg5_A 86 EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIMAANNEVGTIQPVED 160 (384)
T ss_dssp TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHH
T ss_pred cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEECCCCCcccccCHHH
Confidence 4689998887666655545454556678877666532 467888777764 6788887755444556666433
No 74
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=46.53 E-value=1.5e+02 Score=28.63 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=45.5
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecC--C----CCCHHHHHHHHHh----cCceEEEEeCCcccCCccccc
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF--A----GFSSDSLAQRIMD----CKPKVVITSNAVKRGPKAIHL 176 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~--~----~~~~~~l~~~l~~----~~~~~ii~~~~~~~~~~~~~~ 176 (631)
+++||.|.+.-+.......+ +...|+.++.++ . ....+.+...+++ -++++++++......+...++
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~ 166 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDV 166 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCH
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCH
Confidence 46899998887766554433 667888776665 2 2368889988875 367788777655555555565
No 75
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=46.15 E-value=76 Score=31.02 Aligned_cols=100 Identities=11% Similarity=0.131 Sum_probs=63.2
Q ss_pred hhhhhhhhccCCCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCh-HHHHHHHHHH
Q 006776 56 YNCLDRNIEAGLGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM-ELPIAMLACA 131 (631)
Q Consensus 56 ~~~l~~~~~~~~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~-~~~v~~lA~~ 131 (631)
.+.+..+. .|.+|+|..... .+ ....+|.+.|...+..++. .++++++|++..++|-+- ..+..++.++
T Consensus 28 ~~~~~~w~----~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l 100 (358)
T 4gs5_A 28 YDFMEKWL----GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGM 100 (358)
T ss_dssp HHHHHHHH----HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred hhHhhccC----CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHH
Confidence 34455543 356776643321 12 2457999988776655443 468999999999998553 3344556667
Q ss_pred HhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeC
Q 006776 132 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN 165 (631)
Q Consensus 132 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 165 (631)
..|+..+.+.+.... ...+++.++.++.+..
T Consensus 101 ~~g~~~~~~~~~~~~---~~~i~~~~~t~~~~~P 131 (358)
T 4gs5_A 101 ELDWELTVTEPTANP---LAGLDHADFDFVAMVP 131 (358)
T ss_dssp HHTCEEEEECCCSCT---TTTCSSCCCSEEEECH
T ss_pred HhCcEEEecCccccH---HHHHHHhCCeEEEcCh
Confidence 778777777664432 3456777888777654
No 76
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=46.14 E-value=1.8e+02 Score=30.86 Aligned_cols=97 Identities=9% Similarity=0.051 Sum_probs=67.8
Q ss_pred CCCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChH-HHHHHHHHHHhCCEEEecC-
Q 006776 67 LGDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLME-LPIAMLACARIGAVHSVVF- 141 (631)
Q Consensus 67 ~~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~-~~v~~lA~~~~G~v~v~l~- 141 (631)
.++.+|++..... .| ....+|.+.+...+. .....++.++|++..++|-+.. .+..+++++..|+..+..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 3677776644331 12 245688877754332 2334688999999999986543 3445678888998877663
Q ss_pred CCCCHHHHHHHHHhcCceEEEEeCCc
Q 006776 142 AGFSSDSLAQRIMDCKPKVVITSNAV 167 (631)
Q Consensus 142 ~~~~~~~l~~~l~~~~~~~ii~~~~~ 167 (631)
..+.++.+...+++.++.+++.....
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~ 263 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASL 263 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHH
Confidence 35789999999999999999887643
No 77
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=46.03 E-value=1.8e+02 Score=28.46 Aligned_cols=69 Identities=7% Similarity=0.006 Sum_probs=47.9
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhc---CceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDC---KPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~---~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
.++||.|.+-.|....+. -++...|+.++.++. ...+.+...++.. ++++++++......+...++..+
T Consensus 124 ~~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l 195 (398)
T 3a2b_A 124 MGRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPEL 195 (398)
T ss_dssp SCTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHH
T ss_pred hCCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHH
Confidence 578999988877665543 345667988887765 5788899998875 67888877655444555554333
No 78
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=42.94 E-value=1.8e+02 Score=26.06 Aligned_cols=89 Identities=16% Similarity=-0.009 Sum_probs=47.5
Q ss_pred EEEEeccc--ceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcEEee--c----HHH--HHHHHhcCC
Q 006776 284 VYWCTADC--GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYT--A----PTL--VRSLMRDGN 353 (631)
Q Consensus 284 ~~~~~~~~--~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~l~~--~----P~~--l~~l~~~~~ 353 (631)
+++..++. .|..|..+.-..--..|-.++..... .+++.+.+.+.++++++++. + +++ +..+++..
T Consensus 94 ~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~---vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l- 169 (215)
T 3ezx_A 94 LAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVD---VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRL- 169 (215)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSS---CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHH-
T ss_pred eEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCC---CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHH-
Confidence 44444333 35566543322223345555554322 37899999999999997777 2 222 22222221
Q ss_pred ccccccCC-CceeEEEEccCCCCHhHHH
Q 006776 354 EYVTRYSR-KSLRVLGSVGEPINPSAWR 380 (631)
Q Consensus 354 ~~~~~~~l-~~lr~v~~~Ge~l~~~~~~ 380 (631)
+...+ ..+ .+++||.+++++..+
T Consensus 170 ---~~~~~~~~v-~v~vGG~~~~~~~a~ 193 (215)
T 3ezx_A 170 ---NEEKLRDSV-KCMFGGAPVSDKWIE 193 (215)
T ss_dssp ---HHTTCGGGS-EEEEESSSCCHHHHH
T ss_pred ---HHcCCCCCC-EEEEECCCCCHHHHH
Confidence 11111 133 378899999976443
No 79
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=42.60 E-value=1.3e+02 Score=29.66 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=46.6
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCC----CCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG----FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~----~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+++||.|.+..+...... ..-++...|+.++.++.+ ...+.+...+++.++++|+.+......+...++..+
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i 158 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAI 158 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHH
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHH
Confidence 679999888876543211 233456678766555432 478899999986677888887655555566665544
No 80
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=42.03 E-value=1.4e+02 Score=29.73 Aligned_cols=75 Identities=9% Similarity=0.101 Sum_probs=47.6
Q ss_pred HHHCCCCCCCEEEEEccCChHHHHHHH-HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 102 LKDIGVKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 102 L~~~Gv~~gd~V~i~~~n~~~~~v~~l-A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
|+.+ +++||.|.+.-+........+- .+.+.|+.++.++.. ..+.+...++. +.++|++..-....+...++..+
T Consensus 113 l~~l-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i 188 (414)
T 3ndn_A 113 LGAL-LGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-DLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAV 188 (414)
T ss_dssp HHTT-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHH
T ss_pred HHHH-hCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-CHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHH
Confidence 3344 6899999877665544433322 235578887777664 67788777764 67888876655555555565443
No 81
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=41.71 E-value=2.4e+02 Score=27.73 Aligned_cols=75 Identities=12% Similarity=0.157 Sum_probs=46.4
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC-----CCCHHHHHHHHHhc---Cce-EEEEeCC-cccCCccccc
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA-----GFSSDSLAQRIMDC---KPK-VVITSNA-VKRGPKAIHL 176 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~-----~~~~~~l~~~l~~~---~~~-~ii~~~~-~~~~~~~~~~ 176 (631)
+++||.|.+.-|.-..+. -++...|+.++.++. .+..+.+...++.. +.+ +++++.. ....+...+.
T Consensus 122 ~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~ 198 (413)
T 3t18_A 122 LDEGDPLICHDYYWAPYR---KICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSD 198 (413)
T ss_dssp CCSSCEEEEESSCCTHHH---HHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCH
T ss_pred cCCCCEEEECCCCcccHH---HHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCH
Confidence 578999998888665544 345567877666653 45788898888763 566 5665543 3334444444
Q ss_pred HHHHHHHHH
Q 006776 177 KDIVDAALD 185 (631)
Q Consensus 177 ~~~~~~~~~ 185 (631)
.. +.++.+
T Consensus 199 ~~-l~~l~~ 206 (413)
T 3t18_A 199 EE-WDEVIT 206 (413)
T ss_dssp HH-HHHHHH
T ss_pred HH-HHHHHH
Confidence 33 344443
No 82
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=41.59 E-value=83 Score=32.63 Aligned_cols=85 Identities=11% Similarity=0.038 Sum_probs=58.8
Q ss_pred EEcCchHHHHHH--HHHHHhcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCc
Q 006776 259 LHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVT 336 (631)
Q Consensus 259 ~~t~~~~l~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt 336 (631)
.+|.+.+..... .......+++++|++...++-+.- ....+++++..|+..+..+.. ...+++..++++.++.
T Consensus 48 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~---~~~~~l~~~l~~~~~~ 122 (529)
T 2v7b_A 48 STTYGELEERARRFASALRTLGVHPEERILLVMLDTVA--LPVAFLGALYAGVVPVVANTL---LTPADYVYMLTHSHAR 122 (529)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTH--HHHHHHHHHHHTCEEEECCTT---CCHHHHHHHHHHHTCS
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHHHHHHHHHcCceEEecCcc---cCHHHHHHHHhccCCe
Confidence 356665432221 112235689999999888776543 345678999999998887543 3678899999999999
Q ss_pred EEeecHHHHHHH
Q 006776 337 IFYTAPTLVRSL 348 (631)
Q Consensus 337 ~l~~~P~~l~~l 348 (631)
.+++.+.....+
T Consensus 123 ~vi~~~~~~~~~ 134 (529)
T 2v7b_A 123 AVIASGALVQNV 134 (529)
T ss_dssp EEEEEGGGHHHH
T ss_pred EEEechhhhhHH
Confidence 999877655433
No 83
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=41.51 E-value=1.8e+02 Score=29.43 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=69.9
Q ss_pred CCCCCeEEEeCC--CCCCCCceEEEcCchHHHHHHHHH--HHhcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEE
Q 006776 238 DAEDPLFLLYTS--GSTGKPKGVLHTTGGYMVHTATTF--KYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 313 (631)
Q Consensus 238 ~~~~~~~i~~TS--GTTG~PK~v~~t~~~~l~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl 313 (631)
.++.+|++.... +.+| ....+|.+.+........ ....+. ++|++...++-+.- ....+++++..|+..+.
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE--YVVAFLGALQAGRIAVP 111 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH--HHHHHHHHHHTTCEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH--HHHHHHHHHHhCcEEEe
Confidence 467778766542 2223 224567776433322221 123454 89998877765543 34567899999999888
Q ss_pred ecCCCCCCChhHHHHHHHHhCCcEEeecHHHHHHHHhc
Q 006776 314 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 351 (631)
Q Consensus 314 ~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~ 351 (631)
..........+++..+++..++.++++.+.....+...
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 75421112567888999999999999998877766654
No 84
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=39.92 E-value=1.2e+02 Score=29.68 Aligned_cols=71 Identities=8% Similarity=-0.037 Sum_probs=42.6
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecC--CC--CCHHHHHHHHHh-cCceEEEEeCCcccCCcccccHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF--AG--FSSDSLAQRIMD-CKPKVVITSNAVKRGPKAIHLKD 178 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~--~~--~~~~~l~~~l~~-~~~~~ii~~~~~~~~~~~~~~~~ 178 (631)
+++||.|.+.-+...... ..-.+.+.|+.++.++ .+ ...+.+...+++ -++++|+.+......+...++..
T Consensus 80 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~ 155 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDA 155 (392)
T ss_dssp CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHH
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHH
Confidence 578998887766544332 1122344676555443 32 578899988875 36788887765544455555443
No 85
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=39.68 E-value=1e+02 Score=30.04 Aligned_cols=75 Identities=17% Similarity=0.167 Sum_probs=45.2
Q ss_pred HHCCCCCCCEEEEEccCChHHHHHHHH-HHHhCCEEEecCCC------CCHHHHHHHHHhcCceEEEEeCCcccCCcccc
Q 006776 103 KDIGVKKGDAVIIYLPMLMELPIAMLA-CARIGAVHSVVFAG------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 175 (631)
Q Consensus 103 ~~~Gv~~gd~V~i~~~n~~~~~v~~lA-~~~~G~v~v~l~~~------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 175 (631)
+.+.+++||.|.+.-|........+.. +...|+.++.++.. ...+.+...++. ++++|+.+......+...+
T Consensus 94 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~ 172 (390)
T 1elu_A 94 WGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILSHLLWNTGQVLP 172 (390)
T ss_dssp HHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEESBCTTTCCBCC
T ss_pred hCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC-CceEEEEeccccCCceecC
Confidence 334467899998888877666544433 34568776665532 345666655543 5777777665444555556
Q ss_pred cHH
Q 006776 176 LKD 178 (631)
Q Consensus 176 ~~~ 178 (631)
+..
T Consensus 173 ~~~ 175 (390)
T 1elu_A 173 LAE 175 (390)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 86
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=39.38 E-value=58 Score=23.66 Aligned_cols=47 Identities=26% Similarity=0.065 Sum_probs=30.8
Q ss_pred hHHHHHHHhcCcccceEEEEeeecCCCCeeEEEEEEeCCCCCCcHHHHHHHHHHHHhhcC
Q 006776 513 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 572 (631)
Q Consensus 513 ~~eIE~~l~~~~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~ 572 (631)
..++.+.|.++|+|.+|..+. ++...++.|..++ .+++.+.+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vt-----G~~d~l~~v~~~d--------~~~l~~~~~~~l~ 61 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVY-----GVYDIVVKVEADS--------MDKLKDFVTNTIR 61 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECS-----SSCSEEEEEECSS--------HHHHHHHHHHTGG
T ss_pred HHHHHHHHhCCCCeEEEEEEe-----ccCCEEEEEEECC--------HHHHHHHHHHHhc
Confidence 378999999999999998873 2233555554432 4456666655554
No 87
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=39.08 E-value=1.1e+02 Score=30.08 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=43.9
Q ss_pred CCCCCEEEEEccCChHHHHHHH-HHHHhCCEEEecCC--C--CCHHHHHHHHHhcCceEEEEeCCcccCCcccccHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFA--G--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 178 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~l-A~~~~G~v~v~l~~--~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~ 178 (631)
+++||.|.+.-+........+. ++...|+.++.++. + ...+.+...++. ++++|+.+......+...++..
T Consensus 115 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~ 190 (420)
T 1t3i_A 115 LKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE-KTKLVTVVHISNTLGCVNPAEE 190 (420)
T ss_dssp CCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHH
T ss_pred cCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC-CceEEEEeCCcccccCcCCHHH
Confidence 6789999888776666443333 33456776555543 2 457788777754 6778877665444555556433
No 88
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=39.00 E-value=1.2e+02 Score=30.10 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=46.5
Q ss_pred CCCCCEEEEEccCChHHHHHHH-HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~l-A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+++||.|.+.-|....+...+- ++...|+.++.++.. ..+.+...+.. ++++|+.+......+...++..+
T Consensus 98 ~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~l~~i 169 (404)
T 1e5e_A 98 LKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-IPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERV 169 (404)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-STTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHH
T ss_pred hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-CHHHHHHhcCC-CCcEEEEECCCCCCCcccCHHHH
Confidence 5789999888776665444322 466778888777664 55677766653 67888877655555566665443
No 89
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=38.85 E-value=1.8e+02 Score=28.19 Aligned_cols=65 Identities=9% Similarity=0.074 Sum_probs=43.4
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCC-------CCHHHHHHHHHhcCceEEEEeCCcccCCcccc
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG-------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 175 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~-------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 175 (631)
+++||.|.+..|....+. .++...|+.++.++.. ...+.+...+ ..++++++........+...+
T Consensus 103 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~ 174 (383)
T 3kax_A 103 TKENESVLVQPPIYPPFF---EMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLLCSPHNPIGRVWK 174 (383)
T ss_dssp CCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEEESSBTTTTBCCC
T ss_pred CCCCCEEEEcCCCcHHHH---HHHHHcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEEeCCCCCCCcCcC
Confidence 578999887776655433 4566788887777642 5788998888 557788777654443444433
No 90
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=38.81 E-value=2e+02 Score=27.84 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=43.7
Q ss_pred CCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC-C----CCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 108 KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA-G----FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 108 ~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~-~----~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
++||.|.+.-+....... .-++.+.|+.++.++. + ...+.+...++..++++|+.+......+...++..+
T Consensus 84 ~~gd~vlv~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i 159 (385)
T 2bkw_A 84 APNKNVLVVSTGTFSDRF-ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAI 159 (385)
T ss_dssp CSCCEEEEECSSHHHHHH-HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHH
T ss_pred CCCCeEEEEcCCcchHHH-HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHH
Confidence 689988776443322221 2345567877665544 2 468889888876567888877655445555565443
No 91
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=38.77 E-value=1.6e+02 Score=28.33 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=47.8
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEec--CC--CCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV--FA--GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDA 182 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l--~~--~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 182 (631)
+++||.|.+..|....+. .++...|+.++.+ ++ ....+.+...++..++++|+++......+...+. ..+.+
T Consensus 106 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~-~~l~~ 181 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYA---MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDA-ADMEA 181 (367)
T ss_dssp CCTTCEEEEEESCSCCSC---HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCH-HHHHH
T ss_pred cCCCCEEEEcCCCHHHHH---HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCH-HHHHH
Confidence 578999998877665443 2345678765554 33 3578899999987678888876544333443332 23444
Q ss_pred HHHHh
Q 006776 183 ALDEC 187 (631)
Q Consensus 183 ~~~~~ 187 (631)
..+.+
T Consensus 182 i~~~~ 186 (367)
T 3euc_A 182 IVRAA 186 (367)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 44444
No 92
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=38.60 E-value=1.2e+02 Score=29.64 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=49.3
Q ss_pred HHCC-CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeC
Q 006776 103 KDIG-VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN 165 (631)
Q Consensus 103 ~~~G-v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 165 (631)
.+.| +++|.+..+....+-..+.+-++|.++|.-++.+-|...+..-..+++..++++++++.
T Consensus 78 ~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 78 EEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp HHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 3444 67887666677677788888899999998877777766666777889999999999864
No 93
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=38.46 E-value=2.8e+02 Score=27.22 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=46.5
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC-----CCCHHHHHHHHHhc---Cce-EEEEeCC-cccCCccccc
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA-----GFSSDSLAQRIMDC---KPK-VVITSNA-VKRGPKAIHL 176 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~-----~~~~~~l~~~l~~~---~~~-~ii~~~~-~~~~~~~~~~ 176 (631)
+++||.|.+..|.-..+. .++...|+.++.++. .+..+.+...++.. +.+ +++++.. ....+...+.
T Consensus 123 ~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~ 199 (418)
T 3rq1_A 123 TEPGDEVLTADWYWGAYR---VICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIED 199 (418)
T ss_dssp SCTTCEEEEESSCCTHHH---HHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCH
T ss_pred cCCCCEEEECCCCchhHH---HHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCH
Confidence 578999998887765544 345678887766653 45788888888763 555 5555533 3334444444
Q ss_pred HHHHHHHHH
Q 006776 177 KDIVDAALD 185 (631)
Q Consensus 177 ~~~~~~~~~ 185 (631)
.. +.++.+
T Consensus 200 ~~-l~~l~~ 207 (418)
T 3rq1_A 200 KD-WDSILN 207 (418)
T ss_dssp HH-HHHHHH
T ss_pred HH-HHHHHH
Confidence 33 444443
No 94
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=38.39 E-value=3e+02 Score=27.11 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=42.2
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCC-------CCHHHHHHHHHhcCceEEEEeCCcccCCcc
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG-------FSSDSLAQRIMDCKPKVVITSNAVKRGPKA 173 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~-------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 173 (631)
.++||.|.+.-|.-..+ ..++...|+.++.++.. ...+.+...+.+-++++++.+......+..
T Consensus 140 ~~~gd~Vi~~~~~y~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~ 210 (421)
T 3l8a_A 140 SEKGDAVLINSPVYYPF---ARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRV 210 (421)
T ss_dssp SCTEEEEEEEESCCHHH---HHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBC
T ss_pred cCCCCEEEECCCCcHHH---HHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCc
Confidence 46788888877765543 33455677665554422 578999999986678888877655444544
No 95
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=37.63 E-value=78 Score=30.73 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=46.0
Q ss_pred CCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCC----CCHHHHHHHHHhcCceEEEEeCCcccCCcccccH
Q 006776 108 KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG----FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLK 177 (631)
Q Consensus 108 ~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~----~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~ 177 (631)
++||.|.+..+..+.+..+...+.+.|+.++.++.+ ...+.+...++. ++++++.+......+...++.
T Consensus 86 ~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~ 158 (382)
T 4hvk_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQPVE 158 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHH
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEECCCCCceeeCCHH
Confidence 589999888777776666555555678776665533 367888777753 567777766554455555644
No 96
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=37.58 E-value=1.4e+02 Score=29.13 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=41.3
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCC--------CCHHHHHHHHHhcCceEEEEeCCcccCCcc
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG--------FSSDSLAQRIMDCKPKVVITSNAVKRGPKA 173 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~--------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 173 (631)
+++||.|.+..|....+. .++...|+.++.++.. ...+.+...++. +++++........+..
T Consensus 111 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i~~p~nptG~~ 180 (391)
T 4dq6_A 111 TKANDKIMIQEPVYSPFN---SVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLFILCNPHNPVGRV 180 (391)
T ss_dssp SCTTCEEEECSSCCTHHH---HHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--EEEEEEESSBTTTTBC
T ss_pred CCCCCEEEEcCCCCHHHH---HHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEEECCCCCCCcC
Confidence 468999887766655533 3556788877766544 578888888877 7777766544333443
No 97
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=36.94 E-value=1.2e+02 Score=30.20 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=45.0
Q ss_pred CCCCCEEEEEccCChHHHHHHHH-HHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLA-CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIV 180 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA-~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~ 180 (631)
+++||.|.+.-+........+.. +.+.|+.++.++.+ .+.+...++. +.++|++.......+...++..+.
T Consensus 92 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~ 163 (412)
T 2cb1_A 92 LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE--PEAVREALSA-KTRAVFVETVANPALLVPDLEALA 163 (412)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS--HHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHH
T ss_pred hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC--HHHHHHHhcc-CCeEEEEeCCCCCCcccccHHHHH
Confidence 57899998887766544433322 44578877777654 7777777754 677887765544455555654443
No 98
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=36.72 E-value=76 Score=31.31 Aligned_cols=62 Identities=16% Similarity=0.059 Sum_probs=42.0
Q ss_pred HHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC-----CCCHHHHHHHHHhcC--ceEEEEe
Q 006776 100 NYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA-----GFSSDSLAQRIMDCK--PKVVITS 164 (631)
Q Consensus 100 ~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~-----~~~~~~l~~~l~~~~--~~~ii~~ 164 (631)
..|..+++++||.|.+-.+....+ .-++...|+.++.++. ....+.+...+..-+ .++|+..
T Consensus 68 ~al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 68 AAIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 345556789999998877765553 3456678987766543 247888888874444 7777744
No 99
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=36.69 E-value=1e+02 Score=30.04 Aligned_cols=78 Identities=21% Similarity=0.154 Sum_probs=48.1
Q ss_pred eecHHHHHHHH--HHHH-HHHHH-CCCCCCCEEEEEccC-ChHHHHHHHHHHHhCCE-EEecCCCCCHHHHHHHHHhcCc
Q 006776 85 TLTYSQLLQQV--CQLA-NYLKD-IGVKKGDAVIIYLPM-LMELPIAMLACARIGAV-HSVVFAGFSSDSLAQRIMDCKP 158 (631)
Q Consensus 85 ~~Ty~eL~~~v--~~~A-~~L~~-~Gv~~gd~V~i~~~n-~~~~~v~~lA~~~~G~v-~v~l~~~~~~~~l~~~l~~~~~ 158 (631)
.+++.+..... -..| ..|.+ .++++|++|+|.... .+-.+++.+|- ..|+. ++.....-..++....++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 46777654421 1122 24444 489999999999984 45555666555 46874 4444444444555567778888
Q ss_pred eEEEE
Q 006776 159 KVVIT 163 (631)
Q Consensus 159 ~~ii~ 163 (631)
+.++.
T Consensus 218 ~~vi~ 222 (357)
T 1zsy_A 218 EHVIT 222 (357)
T ss_dssp SEEEE
T ss_pred cEEEe
Confidence 87764
No 100
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=36.51 E-value=1e+02 Score=30.34 Aligned_cols=74 Identities=15% Similarity=0.021 Sum_probs=44.2
Q ss_pred CCCCCCEEEEEccCChHHHHHHHH-HHHhCCEEEecCCC-----CCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 106 GVKKGDAVIIYLPMLMELPIAMLA-CARIGAVHSVVFAG-----FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 106 Gv~~gd~V~i~~~n~~~~~v~~lA-~~~~G~v~v~l~~~-----~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
.+++||.|.+.-+........+.. +-+.|+.++.++.+ ...+.+...++. ++++|+.+......+...++..+
T Consensus 109 ~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~i 187 (406)
T 3cai_A 109 RAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK-STRLVAVNSASGTLGGVTDLRAM 187 (406)
T ss_dssp GGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT-TEEEEEEESBCTTTCBBCCCHHH
T ss_pred ccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC-CceEEEEeCCcCCccccCCHHHH
Confidence 357899988877655544333332 23368766555432 356777777753 57777776655555666666544
Q ss_pred H
Q 006776 180 V 180 (631)
Q Consensus 180 ~ 180 (631)
.
T Consensus 188 ~ 188 (406)
T 3cai_A 188 T 188 (406)
T ss_dssp H
T ss_pred H
Confidence 3
No 101
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=36.48 E-value=2.8e+02 Score=26.66 Aligned_cols=71 Identities=4% Similarity=0.010 Sum_probs=45.0
Q ss_pred CCCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecC--CC--CCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 106 GVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF--AG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 106 Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~--~~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+.++||.|.+.-+....+. -++...|+.++.++ ++ ...+.+...++..++++++.+......+...++..+
T Consensus 119 ~~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i 193 (397)
T 3f9t_A 119 SKNEHPKIIVPITAHFSFE---KGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEEL 193 (397)
T ss_dssp CCCSSCEEEEETTCCTHHH---HHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHH
T ss_pred cCCCCeEEEECCcchhHHH---HHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHH
Confidence 4457999988887666533 34445577655554 33 378899999987566666665544445555555443
No 102
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=36.16 E-value=70 Score=31.20 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=41.9
Q ss_pred CCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC--C--CCHHHHHHHHHhcCceEEEEeCCcccCCcccccH
Q 006776 108 KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA--G--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLK 177 (631)
Q Consensus 108 ~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~--~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~ 177 (631)
++||.|.+.-+..+.+.-+...+.+.|+.++.++. + ...+.+...++. ++++++.+......+...++.
T Consensus 86 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~ 158 (382)
T 4eb5_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQPVE 158 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHH
T ss_pred CCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC-CCeEEEEeccCCCccccCCHH
Confidence 57898888777665544433333346876655543 2 467888777754 577777765444445555543
No 103
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=35.62 E-value=1.5e+02 Score=28.87 Aligned_cols=72 Identities=22% Similarity=0.257 Sum_probs=45.5
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC----CCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA----GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~----~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+++||.|.+..|...... ..-++...|+.++.++. ....+.+...++..++++|+.+......+...++..+
T Consensus 90 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i 165 (396)
T 2ch1_A 90 LEEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGV 165 (396)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTH
T ss_pred cCCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHH
Confidence 468999888877655432 22245667876655543 3567888888876567788776544444555554443
No 104
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=35.04 E-value=1.7e+02 Score=28.41 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=44.6
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecC--C--CCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF--A--GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~--~--~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+++||.|.+..+... .....-++...|+.++.++ . ....+.+...++..++++++.+......+...++..+
T Consensus 95 ~~~gd~vl~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i 170 (393)
T 3kgw_A 95 LEPGDSFLTGTNGIW-GMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGF 170 (393)
T ss_dssp CCTTCEEEEEESSHH-HHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTH
T ss_pred CCCCCEEEEEeCCch-hHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHH
Confidence 578999888743321 1122344556777655543 3 3578889988887678888877655445555554433
No 105
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=34.50 E-value=2.1e+02 Score=29.38 Aligned_cols=99 Identities=11% Similarity=0.054 Sum_probs=67.6
Q ss_pred CCCeeEEEEEcCCC---CceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHH-HHHHHHHHHhCCEEEecCC
Q 006776 67 LGDKVAIYWEANDP---GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL-PIAMLACARIGAVHSVVFA 142 (631)
Q Consensus 67 ~~~~~A~~~~~~~~---~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~-~v~~lA~~~~G~v~v~l~~ 142 (631)
.++.+|++...... -....+|.+.+...+..++.. ...++.++|++....|-+... +..+++++..|+..+.++.
T Consensus 143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 221 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIED-AAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPK 221 (521)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHC-TTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCG
T ss_pred CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhc-cccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCH
Confidence 45778877654321 124568998887655433221 125788999998888765433 4556778889988877665
Q ss_pred C--CCHHHHHHHHHhcCceEEEEeCC
Q 006776 143 G--FSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 143 ~--~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
. .....+...+.+.++.++.....
T Consensus 222 ~~~~~~~~~~~~i~~~~~t~~~~~P~ 247 (521)
T 3l8c_A 222 ELVADFKQLFTTIAQLPVGIWTSTPS 247 (521)
T ss_dssp GGTTCHHHHHHHHHHSCCSEEEECHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEeCCC
Confidence 3 47888999999999999887653
No 106
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=33.59 E-value=2.1e+02 Score=28.08 Aligned_cols=62 Identities=24% Similarity=0.303 Sum_probs=42.3
Q ss_pred HHHHCCCCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCC----CCHHHHHHHHHhc--CceEEEEeC
Q 006776 101 YLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG----FSSDSLAQRIMDC--KPKVVITSN 165 (631)
Q Consensus 101 ~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~----~~~~~l~~~l~~~--~~~~ii~~~ 165 (631)
.++.+++++||.|.+..+...... .++...|+.++.++.+ ...+.+...++.. ++++|+...
T Consensus 63 ~~~~l~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 63 ALRVAGVKQDDIVLASSFTFIASV---APICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHHTTCCTTCEEEEESSSCGGGT---HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHHcCCCCCCEEEECCCccHHHH---HHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 344446789999988888766654 3344578776666532 4678898888764 577777765
No 107
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=32.73 E-value=2.5e+02 Score=26.98 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=43.6
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC--C--CCHHHHHHHHHh-cCceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA--G--FSSDSLAQRIMD-CKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~--~--~~~~~l~~~l~~-~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+++||.|.+..|..... ...-++...|+.++.++. + ...+.+...+++ -++++|+.+......+...++..+
T Consensus 92 ~~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i 168 (386)
T 2dr1_A 92 VSKGGKVLVTIIGAFGK-RYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPEL 168 (386)
T ss_dssp SCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHH
T ss_pred hcCCCeEEEEcCCchhH-HHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHH
Confidence 46899888876654331 123345567876655543 2 678899988865 467888877544444555554333
No 108
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=32.58 E-value=1.4e+02 Score=28.81 Aligned_cols=71 Identities=11% Similarity=0.072 Sum_probs=44.8
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCC----CCHHHHHHHHHhcCceEEEEeCCcccCCcccccHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG----FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 178 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~----~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~ 178 (631)
+++||.|.+.-+.... ....-.+...|+.++.++.+ ...+.+...+...++++++.+......+...++..
T Consensus 74 ~~~gd~vi~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~ 148 (384)
T 3zrp_A 74 LKPNDKILVVSNGVFG-DRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKD 148 (384)
T ss_dssp CCTTCEEEEECSSHHH-HHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHH
T ss_pred cCCCCEEEEecCCcch-HHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHH
Confidence 6789988877653321 11122234567766655432 47899999998877888888765554555556443
No 109
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=32.52 E-value=1.2e+02 Score=29.63 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=43.2
Q ss_pred CCCCCEEEEEccCChHHHHHHH-HHHHhCCEEEecCC--C--CCHHHHHHHHHhcCceEEEEeCCcccCCcccccHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFA--G--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 178 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~l-A~~~~G~v~v~l~~--~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~ 178 (631)
+++||.|.+..+........+. ++...|+.++.++. + ...+.+...++. ++++|+.+......+...++..
T Consensus 110 ~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~ 185 (406)
T 1kmj_A 110 VRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE-KTRLLAITHVSNVLGTENPLAE 185 (406)
T ss_dssp CCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT-TEEEEEEESBCTTTCCBCCHHH
T ss_pred CCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc-CCeEEEEeCCCccccCcCCHHH
Confidence 5789999888776554333332 23456776655543 2 356778777754 6788877765544555556433
No 110
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=32.24 E-value=1.3e+02 Score=30.92 Aligned_cols=80 Identities=8% Similarity=-0.032 Sum_probs=56.7
Q ss_pred EcCchHHHHHH--HHHHHhcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEEecCCCCCCChhHHHHHHHHhCCcE
Q 006776 260 HTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTI 337 (631)
Q Consensus 260 ~t~~~~l~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~~~~~~~~i~~~~vt~ 337 (631)
+|.+.+..... .......+++++|++...++-+.- ....+++++..|+..+..+.. ...+++..++++.++.+
T Consensus 29 ~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~---~~~~~l~~il~~~~~~~ 103 (503)
T 4fuq_A 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVE--ALVLYLATVRAGGVYLPLNTA---YTLHELDYFITDAEPKI 103 (503)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTT---CCHHHHHHHHHHHCCSE
T ss_pred EEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCcEEEecCCC---CCHHHHHHHHHhcCCcE
Confidence 56665332222 122234689999999888776543 345678999999998887643 37888999999999999
Q ss_pred EeecHHH
Q 006776 338 FYTAPTL 344 (631)
Q Consensus 338 l~~~P~~ 344 (631)
+.+.+..
T Consensus 104 vi~~~~~ 110 (503)
T 4fuq_A 104 VVCDPSK 110 (503)
T ss_dssp EEECGGG
T ss_pred EEECchh
Confidence 9987653
No 111
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=32.14 E-value=1.1e+02 Score=29.49 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=34.4
Q ss_pred CCCCCCEEEEEccCCh------HHHHHHHH-HHHhCCEEEecCCC------------CCHHHHHHHHHhcCceEEEEeCC
Q 006776 106 GVKKGDAVIIYLPMLM------ELPIAMLA-CARIGAVHSVVFAG------------FSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 106 Gv~~gd~V~i~~~n~~------~~~v~~lA-~~~~G~v~v~l~~~------------~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
-+++||+|+|+.|.+. +.+-..++ +-..|..++.-..- ..+++|...+.+-.++.|++..+
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 3789999999999753 11211111 12345554432211 12345566666667777777654
Q ss_pred cc
Q 006776 167 VK 168 (631)
Q Consensus 167 ~~ 168 (631)
..
T Consensus 88 G~ 89 (327)
T 4h1h_A 88 GF 89 (327)
T ss_dssp CS
T ss_pred ch
Confidence 43
No 112
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=32.10 E-value=1.7e+02 Score=28.22 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=42.6
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCC------CCHHHHHHHHHhcCceEEEEeCCcccCCcccc
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 175 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 175 (631)
+++||.|.+.-|....+. -++...|+.++.++.+ ...+.+...++. ++++|+........+...+
T Consensus 102 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~ 172 (375)
T 3op7_A 102 IEPGDHVISLYPTYQQLY---DIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP-TTKMICINNANNPTGAVMD 172 (375)
T ss_dssp CCTTCEEEEEESSCTHHH---HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCCCCC
T ss_pred cCCCCEEEEeCCCchhHH---HHHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCCCCC
Confidence 578999998888766544 3356678766555432 367888887763 6778877654444444444
No 113
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=32.00 E-value=2e+02 Score=28.53 Aligned_cols=70 Identities=19% Similarity=0.167 Sum_probs=45.5
Q ss_pred CCCCCEEEEEccCChHHHHHHH-HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 178 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~l-A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~ 178 (631)
+++||.|.+.-+......-.+. .+.+.|+.++.++.. ..+.+...++. +.++|+...-....+...++..
T Consensus 102 ~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-d~~~l~~~i~~-~t~~v~~~~p~nptG~~~~l~~ 172 (403)
T 3cog_A 102 LKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS-KIKLLEAAITP-ETKLVWIETPTNPTQKVIDIEG 172 (403)
T ss_dssp SCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT-SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHH
T ss_pred hCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC-CHHHHHHhcCc-CCeEEEEECCCCCCCeeeCHHH
Confidence 5789998888776655443322 234678887777664 67777777654 6788887665555555566433
No 114
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=31.82 E-value=2.1e+02 Score=27.87 Aligned_cols=66 Identities=17% Similarity=0.090 Sum_probs=42.7
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCC-------CCHHHHHHHHHhcCceEEEEeCCcccCCcccc
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG-------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 175 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~-------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 175 (631)
.++||.|.+.-|....+. .++...|+.++.++.. ...+.+...+++.++++|+.+......+...+
T Consensus 110 ~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 182 (399)
T 1c7n_A 110 TKPGDGVIIITPVYYPFF---MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWK 182 (399)
T ss_dssp CCTTCEEEECSSCCTHHH---HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCC
T ss_pred cCCCCEEEEcCCCcHhHH---HHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcC
Confidence 367898888766555543 3445678777766542 66888988887567888887654433344443
No 115
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=31.68 E-value=1.1e+02 Score=29.11 Aligned_cols=75 Identities=19% Similarity=0.100 Sum_probs=47.6
Q ss_pred eecHHHHHHHHHHH---HHHHHHCCCCCCCEEEEEccCC-hHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceE
Q 006776 85 TLTYSQLLQQVCQL---ANYLKDIGVKKGDAVIIYLPML-MELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKV 160 (631)
Q Consensus 85 ~~Ty~eL~~~v~~~---A~~L~~~Gv~~gd~V~i~~~n~-~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ 160 (631)
.+++.+........ -+.|...++++|++|+|....+ +-.+++.+| ...|+..+.+. +.++ ..++++.+++.
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 46777665443322 2345667899999999997444 555555554 56788655553 4455 56777888887
Q ss_pred EEEe
Q 006776 161 VITS 164 (631)
Q Consensus 161 ii~~ 164 (631)
++..
T Consensus 200 ~i~~ 203 (321)
T 3tqh_A 200 CINY 203 (321)
T ss_dssp EEET
T ss_pred EEeC
Confidence 6643
No 116
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=31.67 E-value=1.9e+02 Score=28.03 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=42.0
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecC--C--CCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF--A--GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~--~--~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+++||.|.+.-+..... ...-.+-..|+.++.++ + ....+.+...++..++++|+.+......+...++..+
T Consensus 91 ~~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i 166 (393)
T 2huf_A 91 LEDGDVILIGHTGHWGD-RSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGV 166 (393)
T ss_dssp CCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTH
T ss_pred hCCCCEEEEECCCcchH-HHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHH
Confidence 46899888777654332 11112345676655443 3 2567888888876467777776544444555554433
No 117
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=31.64 E-value=1.9e+02 Score=28.28 Aligned_cols=72 Identities=15% Similarity=0.257 Sum_probs=44.3
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC--C--CCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA--G--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~--~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+++||.|.+.-+..... ...-++...|+.++.++. + ...+.+...++..++++|+.+......+...++..+
T Consensus 85 ~~~gd~Vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i 160 (411)
T 3nnk_A 85 IRPGDKVLVPVFGRFGH-LLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAEL 160 (411)
T ss_dssp CCTTCEEEEEECSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTH
T ss_pred cCCCCEEEEecCCchHH-HHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHH
Confidence 57899888776643221 133445566765555433 2 367889888886678888887644444555555443
No 118
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=31.63 E-value=4e+02 Score=26.57 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=33.3
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC---CCCHHHHHHHHH----h-cCceEEEE
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA---GFSSDSLAQRIM----D-CKPKVVIT 163 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~---~~~~~~l~~~l~----~-~~~~~ii~ 163 (631)
+++||.|.+.-|.-..+. .++...|+.++.++. +...+.+...++ . .++++|++
T Consensus 161 ~~~Gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~~ 222 (448)
T 3aow_A 161 LNPGDIVVVEAPTYLAAL---QAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYT 222 (448)
T ss_dssp CCTTCEEEEEESCCHHHH---HHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCEEEEeCCChHHHH---HHHHHcCCEEEEeccCCCCCCHHHHHHHHhhhhccCCCCeEEEE
Confidence 457888888777655433 234456776555532 246778888876 3 26777643
No 119
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=31.51 E-value=2e+02 Score=28.03 Aligned_cols=72 Identities=19% Similarity=0.191 Sum_probs=40.3
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecC--C--CCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF--A--GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~--~--~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+++||.|.+..|..... ...-++...|+.++.++ + ....+.+...++..++++++.+......+...++..+
T Consensus 106 ~~~gd~Vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i 181 (393)
T 1vjo_A 106 VEPGDVVLIGVAGYFGN-RLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGV 181 (393)
T ss_dssp CCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTH
T ss_pred cCCCCEEEEEcCChhHH-HHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHH
Confidence 46788877776544331 12233455676555444 2 2567888887765466777766544444444454433
No 120
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=31.16 E-value=2.9e+02 Score=26.72 Aligned_cols=66 Identities=14% Similarity=0.067 Sum_probs=42.2
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC--C-----CCHHHHHHHHHhcCceEEEEeCCcccCCcccc
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA--G-----FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 175 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~--~-----~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 175 (631)
.++||.|.+.-|....+. .++...|+.++.++. . ...+.+...++..++++|+.+......+...+
T Consensus 108 ~~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~ 180 (390)
T 1d2f_A 108 SETGEGVVIHTPAYDAFY---KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWT 180 (390)
T ss_dssp SCTTCEEEEEESCCHHHH---HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCC
T ss_pred cCCCCEEEEcCCCcHHHH---HHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcC
Confidence 468999988877655543 344567876655543 1 57889988887667888876543333333333
No 121
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=31.12 E-value=3.3e+02 Score=26.61 Aligned_cols=69 Identities=13% Similarity=0.079 Sum_probs=47.9
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+++||.|.+--+.... ..-++...|+.+++++. ...+.+...++..++++++++.-....+...++..+
T Consensus 140 ~~~gd~Vl~~~~~~~~---~~~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l 208 (409)
T 3kki_A 140 CQPNTNVYIDFFAHMS---LWEGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAEL 208 (409)
T ss_dssp CCTTCEEEEETTSCHH---HHHHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHH
T ss_pred cCCCCEEEECCCcCHH---HHHHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHH
Confidence 5789998876665444 33456677888887754 568899999987777888888655445555564443
No 122
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=30.38 E-value=2.2e+02 Score=27.44 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=43.9
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLK 177 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~ 177 (631)
.++||.|.+.-|....+. .++...|+.++.++ ...+.+...++. ++++++........+...+..
T Consensus 110 ~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~v~--~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~ 174 (370)
T 2z61_A 110 IDDGDEVLIQNPCYPCYK---NFIRFLGAKPVFCD--FTVESLEEALSD-KTKAIIINSPSNPLGEVIDRE 174 (370)
T ss_dssp CCTTCEEEEESSCCTHHH---HHHHHTTCEEEEEC--SSHHHHHHHCCS-SEEEEEEESSCTTTCCCCCHH
T ss_pred cCCCCEEEEeCCCchhHH---HHHHHcCCEEEEeC--CCHHHHHHhccc-CceEEEEcCCCCCcCcccCHH
Confidence 468999988887765543 34567888888776 677888877764 677777665443445555554
No 123
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=30.35 E-value=2.2e+02 Score=26.98 Aligned_cols=63 Identities=11% Similarity=0.060 Sum_probs=43.1
Q ss_pred HHHCCC-CCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeC
Q 006776 102 LKDIGV-KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN 165 (631)
Q Consensus 102 L~~~Gv-~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 165 (631)
+.+.|. ++|+.|.. ...+-....+.++|.+.|.-++.+-|...+..-..+++..+++++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 121 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPG 121 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCC
Confidence 344554 67776655 4455566666677889998776665544445556778899999999875
No 124
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=30.09 E-value=2.6e+02 Score=27.42 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=45.6
Q ss_pred CCCCCEEEEEccCChHHHHHHH-HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~l-A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+++||.|.+.-+......-.+- .+...|+.++.++.. ..+.+...++. ++++|+.+......+...++..+
T Consensus 100 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i 171 (398)
T 2rfv_A 100 CQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-KPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETV 171 (398)
T ss_dssp CCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-SHHHHHHHCCT-TEEEEEEESSBTTTTBCCCHHHH
T ss_pred hCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHH
Confidence 4689999888776655443332 125678877777654 67777777754 67888876655555565664443
No 125
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=29.93 E-value=1.7e+02 Score=21.79 Aligned_cols=61 Identities=10% Similarity=0.052 Sum_probs=36.1
Q ss_pred chHHHHHHHhcC--cccceEEEEeeecCCCCeeEEEEEEeCCCCCCc--HHHHHHHHHHHHhhcC
Q 006776 512 GTAEVESALVSH--PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS--EELRKSLVLAVRKQIG 572 (631)
Q Consensus 512 ~~~eIE~~l~~~--~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~i~~~~~~~l~ 572 (631)
...+|++.+.++ |+|.++-=+-+..-...-.+-+-+++.+..+.. .++..++.+.+++.++
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~ 75 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFP 75 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCC
Confidence 456788888888 998876444333321122333555555543322 4566777888877775
No 126
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=29.84 E-value=3.1e+02 Score=26.35 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=42.9
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecC--C--CCCHHHHHHHHHhcCceEEEEeCCcccCCccccc
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF--A--GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHL 176 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~--~--~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~ 176 (631)
.++||.|.+..|....+. .++...|+.++.++ . ....+.+...++..++++++++......+...+.
T Consensus 113 ~~~gd~Vl~~~~~y~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~ 183 (369)
T 3cq5_A 113 GGPGRTALGFQPSYSMHP---ILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSL 183 (369)
T ss_dssp CSTTCEEEEEESSCTHHH---HHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCH
T ss_pred cCCCCEEEEcCCChHHHH---HHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCH
Confidence 467999988887665543 34566787655553 3 3467888888876567888776544444444443
No 127
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=29.60 E-value=2.3e+02 Score=28.22 Aligned_cols=71 Identities=8% Similarity=0.039 Sum_probs=45.4
Q ss_pred CCCCCEEEEEccCChHHHHHHHH-HHHhCCEEEec-CCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLA-CARIGAVHSVV-FAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA-~~~~G~v~v~l-~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+++||.|.+..+........+.. +.+.|+.++.+ +.. ..+.+...++. +.++|++.......+...++..+
T Consensus 94 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-d~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i 166 (421)
T 2ctz_A 94 AQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE-RPEEFLALTDE-KTRAWWVESIGNPALNIPDLEAL 166 (421)
T ss_dssp CCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC-CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHH
T ss_pred hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCC-CHHHHHHhhcc-CCeEEEEECCCCCCCcccCHHHH
Confidence 57899987766655544433321 35678888877 554 67788777764 67888876655445555665443
No 128
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=29.51 E-value=1.8e+02 Score=24.97 Aligned_cols=70 Identities=13% Similarity=0.101 Sum_probs=44.6
Q ss_pred hHHHHHHHhcCcccceEEEEeeecCCCCee--EEEEEEeCCCCCCcHHHHHHHHHHHHhhcCCCccCceEEECC
Q 006776 513 TAEVESALVSHPQCAEAAVVGVEHEVKGQG--IYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAP 584 (631)
Q Consensus 513 ~~eIE~~l~~~~~V~~~~vv~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~v~ 584 (631)
-.|+++.|.++++|..|-|.-.-.+...+. .-+++.++++...+.... .|+..+...++. ..|..|-+++
T Consensus 92 egELartI~~i~~V~~ARVhl~lP~~~~~~~sASV~l~~~~g~~l~~~q~-~I~~LVa~SV~g-L~~enVtVvd 163 (171)
T 1yj7_A 92 EQDIERLLSKIPGVIDCSVSLNVNNNESQPSSAAVLVISSPEVNLAPSVI-QIKNLVKNSVDD-LKLENISVVI 163 (171)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEEC-------CEEEEEEEECTTCCCGGGHH-HHHHHHHHHSTT-CCGGGEEEEE
T ss_pred HHHHHHHHHcCCCeeEEEEEEECCCCCCCCceEEEEEEeCCCCCCcHhHH-HHHHHHHHhcCC-CCcccEEEEe
Confidence 568999999999999998854422222222 334555677776665433 699989888763 4566666665
No 129
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=29.37 E-value=3.5e+02 Score=26.25 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=45.9
Q ss_pred CCCCCEEEEEccCChHHHHHHH-HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~l-A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+++||.|.+..+........+- .+...|+.+..++.. ..+.+...++. ++++|+.+......+...++..+
T Consensus 88 ~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i 159 (386)
T 1cs1_A 88 LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG-DEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKI 159 (386)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT-CHHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHH
T ss_pred hCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCC-CHHHHHHhhcc-CCcEEEEeCCCCCCCcccCHHHH
Confidence 5789999888877665443332 234568777666543 77888888874 67788877655444555554433
No 130
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=29.32 E-value=1.3e+02 Score=30.23 Aligned_cols=59 Identities=8% Similarity=0.023 Sum_probs=38.8
Q ss_pred CCCCCEEEEEc-cCChHHHHHH--------HHHHHhCCEEEecCCC----CCHHHHHHHHHh-cCceEEEEeC
Q 006776 107 VKKGDAVIIYL-PMLMELPIAM--------LACARIGAVHSVVFAG----FSSDSLAQRIMD-CKPKVVITSN 165 (631)
Q Consensus 107 v~~gd~V~i~~-~n~~~~~v~~--------lA~~~~G~v~v~l~~~----~~~~~l~~~l~~-~~~~~ii~~~ 165 (631)
+++||.|.+.- +......-.+ -.+...|+.+..++.+ ...+.+...+++ -++++|++..
T Consensus 112 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~ 184 (427)
T 3i16_A 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR 184 (427)
T ss_dssp CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEEC
T ss_pred hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEc
Confidence 57999987765 3332222121 1234568877777653 678899998875 5788998877
No 131
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=29.15 E-value=1.6e+02 Score=29.72 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=41.3
Q ss_pred HHHHCCCCCCCEEEEEc-cCChHHHHHHH---------HHHHhCCEEEecCC---CCCHHHHHHHHHh-cCceEEEEeC
Q 006776 101 YLKDIGVKKGDAVIIYL-PMLMELPIAML---------ACARIGAVHSVVFA---GFSSDSLAQRIMD-CKPKVVITSN 165 (631)
Q Consensus 101 ~L~~~Gv~~gd~V~i~~-~n~~~~~v~~l---------A~~~~G~v~v~l~~---~~~~~~l~~~l~~-~~~~~ii~~~ 165 (631)
.|..+ +++||.|.+.- +.... ...++ .+...|+.+..++. ....+.+...+++ .++|+|++..
T Consensus 108 al~al-l~pGD~Vl~~~~~~y~~-~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~ 184 (427)
T 3hvy_A 108 ALFGN-LRPNDTMMSICGMPYDT-LHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQR 184 (427)
T ss_dssp HHHHT-CCTTCEEEECSSSCCGG-GHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEES
T ss_pred HHHHh-cCCCCEEEEeCCCCchh-HHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEEC
Confidence 34444 78999987765 33322 22222 23457888777764 2677889988875 6789999887
No 132
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=29.12 E-value=2.6e+02 Score=27.40 Aligned_cols=70 Identities=13% Similarity=0.026 Sum_probs=45.1
Q ss_pred CCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCC----CCHHHHHHHHHhcCceEEEEeCCcccCCcccccHH
Q 006776 108 KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG----FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 178 (631)
Q Consensus 108 ~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~----~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~ 178 (631)
++||.|.+.-+....+..++..+...|+.++.++.+ ...+.+...+.. ++++++.+......+...++..
T Consensus 111 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~ 184 (423)
T 3lvm_A 111 KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD-DTILVSIMHVNNEIGVVQDIAA 184 (423)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHHH
T ss_pred cCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC-CcEEEEEeCCCCCCccccCHHH
Confidence 469999887777766655554445668766655432 357788777764 6777777655444556666544
No 133
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=29.10 E-value=1.6e+02 Score=28.31 Aligned_cols=78 Identities=22% Similarity=0.110 Sum_probs=51.0
Q ss_pred eecHHHHHHHHHHHH---HHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEE
Q 006776 85 TLTYSQLLQQVCQLA---NYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 161 (631)
Q Consensus 85 ~~Ty~eL~~~v~~~A---~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~i 161 (631)
.+++.|......... +.|+..++++||+|+|+..-+.-..++++|....|+.++.+.. +.+. ..+.+..+++.+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeEE
Confidence 467776544433332 3355678999999999988777777777776666776655543 3344 456777888887
Q ss_pred EEeC
Q 006776 162 ITSN 165 (631)
Q Consensus 162 i~~~ 165 (631)
+-..
T Consensus 213 i~~~ 216 (348)
T 4eez_A 213 INSG 216 (348)
T ss_dssp EEC-
T ss_pred EeCC
Confidence 7543
No 134
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=28.27 E-value=4.2e+02 Score=25.70 Aligned_cols=63 Identities=25% Similarity=0.297 Sum_probs=36.9
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCC---------------CCHHHHHHHHHhcCceEEEEeCCcccCC
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG---------------FSSDSLAQRIMDCKPKVVITSNAVKRGP 171 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~---------------~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 171 (631)
+++||.|.+..|....+. -++...|+.++.++.. ...+.+...++. ++++|+.+......+
T Consensus 106 ~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG 181 (410)
T 3e2y_A 106 VDPGDEVIIMVPFYDCYE---PMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS-KTKAIILNTPHNPLG 181 (410)
T ss_dssp CCTTCEEEEEESCCTTHH---HHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT-TEEEEEEESSCTTTC
T ss_pred cCCCCEEEEeCCCchhhH---HHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCC-CceEEEEeCCCCCCC
Confidence 468898888777655443 2445567755554332 456777666643 677777664433333
Q ss_pred cc
Q 006776 172 KA 173 (631)
Q Consensus 172 ~~ 173 (631)
..
T Consensus 182 ~~ 183 (410)
T 3e2y_A 182 KV 183 (410)
T ss_dssp CC
T ss_pred cC
Confidence 33
No 135
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=28.09 E-value=3.2e+02 Score=26.17 Aligned_cols=65 Identities=8% Similarity=0.009 Sum_probs=40.9
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEE--ecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccc
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHS--VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 175 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v--~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 175 (631)
+++||.|.+..|....+. .++...|+.++ +++++...+.+...++. +.++++........+...+
T Consensus 102 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~nptG~~~~ 168 (377)
T 3fdb_A 102 TPAQSKVIVPTPAYPPFF---HLLSATQREGIFIDATGGINLHDVEKGFQA-GARSILLCNPYNPLGMVFA 168 (377)
T ss_dssp SCTTCCEEEEESCCTHHH---HHHHHHTCCEEEEECTTSCCHHHHHHHHHT-TCCEEEEESSBTTTTBCCC
T ss_pred cCCCCEEEEcCCCcHhHH---HHHHHcCCEEEEccCCCCCCHHHHHHHhcc-CCCEEEEeCCCCCCCCCCC
Confidence 468999988887766543 34455676544 44444678899888876 3566666554433444433
No 136
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=28.04 E-value=3e+02 Score=25.85 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=43.6
Q ss_pred CCCCCEEEEEccCChHHHHHHHH-HHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLA-CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 178 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA-~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~ 178 (631)
+++||.|.+..+........+.. +-+.|+.+..++. ...+.+...++ -+.++|+.+......+...++..
T Consensus 34 ~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~d~~~l~~~i~-~~~~~v~~~~~~nptG~~~~~~~ 104 (331)
T 1pff_A 34 LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-AVPGNIEKHLK-PNTRIVYFETPANPTLKVIDIED 104 (331)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-TSTTHHHHTCC-TTEEEEEEESSCTTTCCCCCHHH
T ss_pred cCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-CCHHHHHHhhc-CCCeEEEEECCCCCcCcccCHHH
Confidence 46899998887776655444332 3467887777654 45566766665 35677777655444455555433
No 137
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=27.98 E-value=66 Score=24.12 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=24.8
Q ss_pred hHHHHHHHhcCcccceEEEEeeecCCCCeeEEEEEEeCC
Q 006776 513 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVE 551 (631)
Q Consensus 513 ~~eIE~~l~~~~~V~~~~vv~~~~~~~~~~~~~~v~~~~ 551 (631)
..++++.|.++|+|.+|..+. +....++.|..++
T Consensus 15 ~~~~~~~l~~~peV~~~~~vt-----G~~D~ll~v~~~d 48 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVT-----GPYDLVALVRLKD 48 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEES-----SSSSEEEEEEESS
T ss_pred HHHHHHHHhcCCCeEEEEEee-----cCCCEEEEEEECC
Confidence 578999999999999998883 2333566665543
No 138
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=27.70 E-value=3.8e+02 Score=25.98 Aligned_cols=53 Identities=23% Similarity=0.284 Sum_probs=35.2
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC---CCCHHHHHHHHHhcCceEEE
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA---GFSSDSLAQRIMDCKPKVVI 162 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~---~~~~~~l~~~l~~~~~~~ii 162 (631)
.++||.|.+.-|....+. .++...|+.++.++. +...+.+...++..++++|+
T Consensus 112 ~~~gd~Vl~~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~ 167 (397)
T 2zyj_A 112 LDEGSPVLLEAPSYMGAI---QAFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLY 167 (397)
T ss_dssp CCTTCEEEEEESCCHHHH---HHHHTTCCEEEEEEEETTEECHHHHHHHHHHCCCSCEE
T ss_pred CCCCCEEEEeCCCcHHHH---HHHHHcCCEEEecCcCCCCCCHHHHHHHHhhcCCeEEE
Confidence 468999988777655543 344557876655532 24678888888876777764
No 139
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=27.60 E-value=4.1e+02 Score=25.72 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=42.1
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC----------CCCHHHHHHHHHhcCceEEEEeCCcccCCcccc
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA----------GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 175 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~----------~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 175 (631)
+++||.|.+.-|....+. -++...|+.++.++. ....+.+...++. ++++++........+...+
T Consensus 123 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~ 197 (407)
T 3nra_A 123 VARGDKVAIVQPDYFANR---KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARVFLFSNPNNPAGVVYS 197 (407)
T ss_dssp CCTTCEEEEEESCCTHHH---HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCEEEEESSCTTTCCCCC
T ss_pred CCCCCEEEEcCCcccchH---HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-CCcEEEEcCCCCCCCcccC
Confidence 578999998887766433 455667876655543 2467888888876 6777766554433344333
No 140
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=27.06 E-value=1.5e+02 Score=33.56 Aligned_cols=96 Identities=13% Similarity=-0.011 Sum_probs=65.3
Q ss_pred CCCCCeEEEeCCCCCCCCceEEEcCchHHHHHH--HHHHHhcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEEec
Q 006776 238 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA--TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 315 (631)
Q Consensus 238 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~l~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~ 315 (631)
.++.++++.-. +| -.+|.+.+..... .......+++++|++...++-+.- ....+++++..|+..+..+
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e--~~v~~lA~~~~Ga~~vpl~ 144 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPE--FVLSFLAASFRGATATAAN 144 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHH--HHHHHHHHHHHTCEEEEEC
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHH--HHHHHHHHHHcCCEEEeeC
Confidence 46777776422 22 2356665332221 122234689999999888776633 3466789999999998876
Q ss_pred CCCCCCChhHHHHHHHHhCCcEEeecHHHH
Q 006776 316 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLV 345 (631)
Q Consensus 316 ~~~~~~~~~~~~~~i~~~~vt~l~~~P~~l 345 (631)
.. ..++++..++++.++.++++.+...
T Consensus 145 ~~---~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 145 PF---FTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TT---SCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CC---CCHHHHHHHHHHcCCeEEEEChHHH
Confidence 43 3788899999999999999876544
No 141
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=27.04 E-value=2.3e+02 Score=28.50 Aligned_cols=63 Identities=13% Similarity=0.009 Sum_probs=46.0
Q ss_pred HHCCC-CCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeC
Q 006776 103 KDIGV-KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN 165 (631)
Q Consensus 103 ~~~Gv-~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 165 (631)
.+.|+ ++|....+....+-....+.+||.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 45664 6775544555557777778888999998777665655556667788999999999864
No 142
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=26.81 E-value=1.9e+02 Score=30.12 Aligned_cols=99 Identities=8% Similarity=-0.044 Sum_probs=67.0
Q ss_pred CCeeEEEEEcCC-CC--ceeeecHHHHHHHHHHHHHHHH-----HCCCCCCCEEEEEccCChH-HHHHHHHHHHhCCEEE
Q 006776 68 GDKVAIYWEAND-PG--VDATLTYSQLLQQVCQLANYLK-----DIGVKKGDAVIIYLPMLME-LPIAMLACARIGAVHS 138 (631)
Q Consensus 68 ~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~~A~~L~-----~~Gv~~gd~V~i~~~n~~~-~~v~~lA~~~~G~v~v 138 (631)
++.+|++..... .+ ....+|.+.+...+..++..+. ..++..++++..+++.... .+..++.++..|+..+
T Consensus 174 ~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~ 253 (562)
T 3ite_A 174 ENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAV 253 (562)
T ss_dssp TTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEE
Confidence 455565544321 11 2456899999888887777654 2457788888888876544 3444677888898877
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEeCC
Q 006776 139 VVFAGFSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 139 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
........+.+...+++.++.++.+...
T Consensus 254 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~ 281 (562)
T 3ite_A 254 TGERLSMLDDLPRTFRELGVTHAGIVPS 281 (562)
T ss_dssp ECCHHHHHHSHHHHHHHTTCCEEEECHH
T ss_pred ecchhhCHHHHHHHHHHcCCCEEEcCHH
Confidence 6554344567788899999999887653
No 143
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=26.75 E-value=3e+02 Score=25.91 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=43.6
Q ss_pred HHCC-CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeC
Q 006776 103 KDIG-VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN 165 (631)
Q Consensus 103 ~~~G-v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 165 (631)
.+.| +++|+.|.... .+-....+.++|.+.|.-++.+-|...+..-..+++..+++++++..
T Consensus 53 ~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 53 EKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp HHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 3445 46777776665 35555666677789998777665554445566788999999999875
No 144
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=26.70 E-value=1.2e+02 Score=29.72 Aligned_cols=69 Identities=12% Similarity=0.056 Sum_probs=42.3
Q ss_pred CCCC-EEEEEccCChHHHHHHHHHHHhCCEEEecCCC----CCHHHHHHHHHhcCceEEEEeCCcccCCcccccH
Q 006776 108 KKGD-AVIIYLPMLMELPIAMLACARIGAVHSVVFAG----FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLK 177 (631)
Q Consensus 108 ~~gd-~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~----~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~ 177 (631)
++|| .|.+.-+..+.+...+..+.+.|+.++.++.+ ...+.+...+.. ++++++.+......+...++.
T Consensus 106 ~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~ 179 (400)
T 3vax_A 106 RTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRP-DTLLVSLMHVNNETGVIQPVA 179 (400)
T ss_dssp HHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCT-TEEEEECCSBCTTTCBBCCHH
T ss_pred cCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCC-CceEEEEECCCCCceeeCcHH
Confidence 4688 88887666665555555445568766655432 356777766653 567777766544455555543
No 145
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=26.69 E-value=2.5e+02 Score=26.77 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=42.8
Q ss_pred HHCC-CCCCC-EEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeC
Q 006776 103 KDIG-VKKGD-AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN 165 (631)
Q Consensus 103 ~~~G-v~~gd-~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 165 (631)
.+.| +++|. .|.. ...+-....+.++|.+.|.-++.+-|...+..-...++..+++++++..
T Consensus 58 ~~~G~~~~~~~~vv~-assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 121 (322)
T 1z7w_A 58 EKKGLIKPGESVLIE-PTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDP 121 (322)
T ss_dssp HHTTSCCTTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Confidence 4556 45664 4444 4556667777778889998776665544445556788899999998764
No 146
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=26.60 E-value=1.4e+02 Score=29.38 Aligned_cols=64 Identities=6% Similarity=-0.033 Sum_probs=35.3
Q ss_pred CCCCCCCEEEEEccCChH------HHHHHHHHH-HhCCEEEecCCC------------CCHHHHHHHHHhcCceEEEEeC
Q 006776 105 IGVKKGDAVIIYLPMLME------LPIAMLACA-RIGAVHSVVFAG------------FSSDSLAQRIMDCKPKVVITSN 165 (631)
Q Consensus 105 ~Gv~~gd~V~i~~~n~~~------~~v~~lA~~-~~G~v~v~l~~~------------~~~~~l~~~l~~~~~~~ii~~~ 165 (631)
.-+++||+|+|+.|.+.- .+-..++.+ ..|..++.-... ..+++|...+.+-++++|++..
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 358999999999998742 121222222 356555432211 1134455556666667777765
Q ss_pred Ccc
Q 006776 166 AVK 168 (631)
Q Consensus 166 ~~~ 168 (631)
+..
T Consensus 118 GGy 120 (371)
T 3tla_A 118 GGD 120 (371)
T ss_dssp CCS
T ss_pred ccc
Confidence 543
No 147
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=26.38 E-value=4.4e+02 Score=25.37 Aligned_cols=56 Identities=20% Similarity=0.295 Sum_probs=35.2
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC------CCCHHHHHHHHHhcCceEEEEeCC
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA------GFSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~------~~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
+++||.|.+..|....+. -++...|+.++.++. ....+.+...+.. ++++++.+..
T Consensus 112 ~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p 173 (385)
T 1b5p_A 112 LDPGDEVIVLSPYWVSYP---EMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP-RTKALVVNSP 173 (385)
T ss_dssp CCTTCEEEEEESCCTHHH---HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT-TEEEEEEESS
T ss_pred cCCCCEEEEcCCCchhHH---HHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC-CCEEEEEeCC
Confidence 468999988888765543 234567876655543 2456777666643 4677666544
No 148
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=26.17 E-value=2.1e+02 Score=27.73 Aligned_cols=63 Identities=14% Similarity=-0.004 Sum_probs=35.6
Q ss_pred CCCCCCEEEEEccCChH------HHHHHHHHH-HhCCEEEecCCC------------CCHHHHHHHHHhcCceEEEEeCC
Q 006776 106 GVKKGDAVIIYLPMLME------LPIAMLACA-RIGAVHSVVFAG------------FSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 106 Gv~~gd~V~i~~~n~~~------~~v~~lA~~-~~G~v~v~l~~~------------~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
-+++||+|+|+.|.+.- .+-.-++.+ ..|..++.-... ...++|...+.+-++++|++..+
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 47899999999998842 122222222 356555432110 11344556666667777777665
Q ss_pred cc
Q 006776 167 VK 168 (631)
Q Consensus 167 ~~ 168 (631)
..
T Consensus 89 G~ 90 (336)
T 3sr3_A 89 GM 90 (336)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 149
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=25.97 E-value=3.7e+02 Score=25.69 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=44.1
Q ss_pred CCCC-CEEEEEccCChHHHHHHHHHHHhCCEEEecCC----CCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHH
Q 006776 107 VKKG-DAVIIYLPMLMELPIAMLACARIGAVHSVVFA----GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVD 181 (631)
Q Consensus 107 v~~g-d~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~----~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 181 (631)
.++| |.|.+.-|.-..+. .++...|+.++.++. ....+.+...+. ++++++.+......+...+. +.+.
T Consensus 96 ~~~g~d~Vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--~~~~v~l~~p~nptG~~~~~-~~l~ 169 (356)
T 1fg7_A 96 CEPGKDAILYCPPTYGMYS---VSAETIGVECRTVPTLDNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINP-QDFR 169 (356)
T ss_dssp CCTTTCEEEECSSSCTHHH---HHHHHHTCEEEECCCCTTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCH-HHHH
T ss_pred hCCCCCEEEEeCCChHHHH---HHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc--CCCEEEEeCCCCCCCCCCCH-HHHH
Confidence 3678 99888777655544 344567887766653 245666666555 67888776544444444443 3344
Q ss_pred HHHHHh
Q 006776 182 AALDEC 187 (631)
Q Consensus 182 ~~~~~~ 187 (631)
+..+.+
T Consensus 170 ~l~~~~ 175 (356)
T 1fg7_A 170 TLLELT 175 (356)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 444444
No 150
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=25.97 E-value=2.3e+02 Score=27.42 Aligned_cols=62 Identities=15% Similarity=0.016 Sum_probs=42.0
Q ss_pred HHCC-CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeC
Q 006776 103 KDIG-VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN 165 (631)
Q Consensus 103 ~~~G-v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 165 (631)
.+.| +++|+.|..... +-....+.++|.+.|.-++.+-|...+..-..+++..+++++++..
T Consensus 70 ~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 132 (343)
T 2pqm_A 70 IKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEG 132 (343)
T ss_dssp HHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 3445 467777666653 5555566677788997666655544445556788889999999865
No 151
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=25.90 E-value=2.5e+02 Score=26.52 Aligned_cols=64 Identities=17% Similarity=0.080 Sum_probs=42.4
Q ss_pred HHHCCC-CCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCC
Q 006776 102 LKDIGV-KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 102 L~~~Gv-~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
+.+.|. ++|+.|.. ...+-....+.++|.+.|.-++.+-|...+..-..+++..+++++++...
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 334554 67776655 44445556666778889987666555444445566789999999998753
No 152
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=25.83 E-value=3.2e+02 Score=27.49 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=45.1
Q ss_pred CCCCCEEEEEccCChHHHHHHH-HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~l-A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+++||.|.+.-+......-.+- .+.+.|+.+..++.. ..+.+...|+.-.+++|++.......+...++..+
T Consensus 150 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I 222 (445)
T 1qgn_A 150 VPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA-DVGALELALNQKKVNLFFTESPTNPFLRCVDIELV 222 (445)
T ss_dssp SCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS-CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHH
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHH
Confidence 4689988877654443332221 345678877777664 67888888876333788776655555566665443
No 153
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=25.67 E-value=4.9e+02 Score=25.58 Aligned_cols=55 Identities=24% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC---CCCHHHHHHHHHh-----------cCceEEEEe
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA---GFSSDSLAQRIMD-----------CKPKVVITS 164 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~---~~~~~~l~~~l~~-----------~~~~~ii~~ 164 (631)
+++||.|++..|.-..+. -++...|+.++.++. +...+.+...++. .++++|++.
T Consensus 129 ~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~ 197 (425)
T 2r2n_A 129 INPGDNVLLDEPAYSGTL---QSLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTV 197 (425)
T ss_dssp CCTTCEEEEESSCCHHHH---HHHGGGTCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEEC
T ss_pred CCCCCEEEEeCCCcHHHH---HHHHHcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEEC
Confidence 357888877776654433 234556776665543 2456778777763 246777653
No 154
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=25.60 E-value=4.8e+02 Score=25.45 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=38.3
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEec--CC--------------CCCHHHHHHHHHhcCceEEEEeCCcccC
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV--FA--------------GFSSDSLAQRIMDCKPKVVITSNAVKRG 170 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l--~~--------------~~~~~~l~~~l~~~~~~~ii~~~~~~~~ 170 (631)
+++||.|.+..|....+. -++...|+.++.+ ++ ....+.+...++. ++++++.+......
T Consensus 112 ~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~npt 187 (422)
T 3fvs_A 112 VDEGDEVIIIEPFFDCYE---PMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPL 187 (422)
T ss_dssp CCTTCEEEEEESCCTTHH---HHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT-TEEEEEEESSCTTT
T ss_pred cCCCCEEEEcCCCchhhH---HHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCC-CceEEEECCCCCCC
Confidence 578999988887655533 3455677655544 33 1466777766653 57777766544333
Q ss_pred Cccc
Q 006776 171 PKAI 174 (631)
Q Consensus 171 ~~~~ 174 (631)
+...
T Consensus 188 G~~~ 191 (422)
T 3fvs_A 188 GKVF 191 (422)
T ss_dssp CCCC
T ss_pred CcCC
Confidence 4443
No 155
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=25.08 E-value=1.8e+02 Score=28.10 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.8
Q ss_pred CCCCCCEEEEEccCCh
Q 006776 106 GVKKGDAVIIYLPMLM 121 (631)
Q Consensus 106 Gv~~gd~V~i~~~n~~ 121 (631)
-+++||+|+|+.|.+.
T Consensus 8 ~L~~GD~I~ivaPS~~ 23 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCS 23 (331)
T ss_dssp CCCTTCEEEEECSSSC
T ss_pred CCCCcCEEEEEeCCCC
Confidence 3789999999999874
No 156
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=24.89 E-value=3.8e+02 Score=25.78 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=36.3
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCC------CCHHHHHHHHHhcCceEEEEeCC
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG------FSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~------~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
+++||.|.+.-|....+. .++...|+.++.++.. ...+.+...++. ++++++.+..
T Consensus 111 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p 172 (388)
T 1j32_A 111 IEPGDEVIIPAPFWVSYP---EMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP-KTKLLVFNTP 172 (388)
T ss_dssp CCTTCEEEEESSCCTHHH---HHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT-TEEEEEEESS
T ss_pred cCCCCEEEEcCCCChhHH---HHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc-CceEEEEeCC
Confidence 468999888877665543 3455678766655432 457788777754 5777776544
No 157
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=24.65 E-value=1.5e+02 Score=28.94 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=40.0
Q ss_pred HHHHCCCCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecC--CC---CCHHHHHHHHHhcCceEEEEeC
Q 006776 101 YLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF--AG---FSSDSLAQRIMDCKPKVVITSN 165 (631)
Q Consensus 101 ~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~--~~---~~~~~l~~~l~~~~~~~ii~~~ 165 (631)
.++.+++++||.|.+.-+...... -++...|+.++.++ ++ ...+.+...++. ++++|+...
T Consensus 70 ~~~~~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~ 135 (393)
T 1mdo_A 70 ALMALGIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPVH 135 (393)
T ss_dssp HHHHTTCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCBC
T ss_pred HHHHcCCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEeC
Confidence 344456789999888776655543 35566787666554 32 567888877764 677777654
No 158
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=24.44 E-value=4.9e+02 Score=25.60 Aligned_cols=68 Identities=19% Similarity=0.125 Sum_probs=46.5
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhc---CceEEEEeCCcccCCcccccHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDC---KPKVVITSNAVKRGPKAIHLKD 178 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~---~~~~ii~~~~~~~~~~~~~~~~ 178 (631)
.++||.|.+-.+...... -++...|+.++.++ ....+.+...++.. ++++|+++.-....+...++..
T Consensus 145 ~~~gd~vl~~~~~h~~~~---~~~~~~g~~~~~~~-~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~ 215 (427)
T 2w8t_A 145 AGKGEYVILDADSHASIY---DGCQQGNAEIVRFR-HNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKE 215 (427)
T ss_dssp SCTTCEEEEETTCCHHHH---HHHHHSCSEEEEEC-TTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHH
T ss_pred cCCCCEEEECCcccHHHH---HHHHHcCCeeEEeC-CCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHH
Confidence 468998888777665433 44566788877765 46788899999875 6788888765544455555433
No 159
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=23.79 E-value=1.3e+02 Score=30.22 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEEccCC-hHHHHHH-HHHHHhCCEEEecC
Q 006776 92 LQQVCQLANYLKD--IGVKKGDAVIIYLPML-MELPIAM-LACARIGAVHSVVF 141 (631)
Q Consensus 92 ~~~v~~~A~~L~~--~Gv~~gd~V~i~~~n~-~~~~v~~-lA~~~~G~v~v~l~ 141 (631)
..+..++|..+.+ .+|++|+.|.|..+-. .+++-++ -++.++|+-++.+.
T Consensus 5 ~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 58 (408)
T 2ayi_A 5 KRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVI 58 (408)
T ss_dssp HHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 4567778888876 4689999999999854 3444333 38888998877653
No 160
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=23.79 E-value=4.6e+02 Score=24.69 Aligned_cols=68 Identities=12% Similarity=0.030 Sum_probs=45.5
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC----CCCHHHHHHHHHh-cCceEEEEeCCcccCCcccccH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA----GFSSDSLAQRIMD-CKPKVVITSNAVKRGPKAIHLK 177 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~----~~~~~~l~~~l~~-~~~~~ii~~~~~~~~~~~~~~~ 177 (631)
.++||.|.+..|....+. -++...|+.++.++. ....+.+...+++ -++++++.+......+...+..
T Consensus 89 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~ 161 (354)
T 3ly1_A 89 ASLEAQLVIPELTYGDGE---HFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPAD 161 (354)
T ss_dssp CCTTCEEEEESSSCTHHH---HHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHH
T ss_pred hCCCCeEEECCCCchHHH---HHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHH
Confidence 478999998887766543 455577877666543 2467889988886 5788888765544444444443
No 161
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=23.67 E-value=3.4e+02 Score=26.28 Aligned_cols=65 Identities=22% Similarity=0.205 Sum_probs=41.0
Q ss_pred CCCC-CEEEEEccCChHHHHHHHHHHHhCCEEEecCC-----CCCHHHHHHHHHhcCceEEEEeCCcccCCcccc
Q 006776 107 VKKG-DAVIIYLPMLMELPIAMLACARIGAVHSVVFA-----GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 175 (631)
Q Consensus 107 v~~g-d~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~-----~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 175 (631)
+++| |.|.+..|....+. .++...|+.++.++. ....+.+...++. ++++++.+......+...+
T Consensus 120 ~~~g~d~vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~ 190 (398)
T 3ele_A 120 TSDAYDEFITIAPYFPEYK---VFVNAAGARLVEVPADTEHFQIDFDALEERINA-HTRGVIINSPNNPSGTVYS 190 (398)
T ss_dssp CCSTTCEEEEESSCCTHHH---HHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCT-TEEEEEECSSCTTTCCCCC
T ss_pred cCCCCCEEEEeCCCchhhH---HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCc-CCCEEEEcCCCCCCCCCCC
Confidence 5689 99998888765543 345567876666543 3467788777754 6777777654433444444
No 162
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=23.57 E-value=5e+02 Score=24.94 Aligned_cols=76 Identities=17% Similarity=0.161 Sum_probs=42.6
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC-----CCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA-----GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVD 181 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~-----~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 181 (631)
.++||.|.+.-|....+.- ++...|+.++.++. ....+.+...+. -++++++.+......+...+. +.+.
T Consensus 112 ~~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~-~~l~ 186 (386)
T 1u08_A 112 VRNGDEVICFDPSYDSYAP---AIALSGGIVKRMALQPPHFRVDWQEFAALLS-ERTRLVILNTPHNPSATVWQQ-ADFA 186 (386)
T ss_dssp CCTTCEEEEEESCCTTHHH---HHHHTTCEEEEEECCTTTCCCCHHHHHHHCC-TTEEEEEEESSCTTTCCCCCH-HHHH
T ss_pred CCCCCEEEEeCCCchhHHH---HHHHcCCEEEEeecCcccCcCCHHHHHHhhc-ccCEEEEEeCCCCCCCccCCH-HHHH
Confidence 4678888888877665432 44566766555432 256777777764 356777765433333333332 2334
Q ss_pred HHHHHh
Q 006776 182 AALDEC 187 (631)
Q Consensus 182 ~~~~~~ 187 (631)
+..+.+
T Consensus 187 ~i~~~~ 192 (386)
T 1u08_A 187 ALWQAI 192 (386)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 163
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=23.44 E-value=2.5e+02 Score=26.67 Aligned_cols=63 Identities=13% Similarity=0.006 Sum_probs=42.6
Q ss_pred HHHCCC-CCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeC
Q 006776 102 LKDIGV-KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN 165 (631)
Q Consensus 102 L~~~Gv-~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 165 (631)
+.+.|. ++|+.|.... .+-....+.++|.+.|.-++.+-|...+..-...++..+++++++..
T Consensus 53 a~~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 116 (316)
T 1y7l_A 53 AEKDGTLTKGKEIVDAT-SGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEG 116 (316)
T ss_dssp HHHTTSSCTTCEEEESC-CSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 344554 6677665544 45666667777889997666655544445556788889999999865
No 164
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=23.29 E-value=4e+02 Score=25.01 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=42.1
Q ss_pred HHCC-CCCCC--EEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCC
Q 006776 103 KDIG-VKKGD--AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 103 ~~~G-v~~gd--~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
.+.| +++|+ .|.. ...+-....+.++|.+.|.-++.+-|...+..-..+++..+++++++...
T Consensus 52 ~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 52 EERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3445 56677 4444 34555666666778899987666555444455567888899999998753
No 165
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=23.11 E-value=1.5e+02 Score=29.51 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=36.9
Q ss_pred CCCCCEEEEEccCChHHHHHHH--------HHHHhCCEEEecCCC----CCHHHHHHHHHhcCceEEEEeC
Q 006776 107 VKKGDAVIIYLPMLMELPIAML--------ACARIGAVHSVVFAG----FSSDSLAQRIMDCKPKVVITSN 165 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~l--------A~~~~G~v~v~l~~~----~~~~~l~~~l~~~~~~~ii~~~ 165 (631)
+++||.|.+.-.........++ .+.+.|+.+..++.+ ...+.+...++. +.++|++..
T Consensus 98 l~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~-~tklV~i~~ 167 (409)
T 3jzl_A 98 LRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP-KTKMIGIQR 167 (409)
T ss_dssp CCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT-TEEEEEEEC
T ss_pred cCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC-CCeEEEEEC
Confidence 6799998777622333222222 234568877777653 677888887754 678888776
No 166
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=22.70 E-value=3.8e+02 Score=26.13 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=44.6
Q ss_pred CCCCCEEEEEccCChHHHHHHHH-HHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLA-CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA-~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+++||.|.+.-+......-.+-. +.+.|+.+..++. ...+.+...++. +.++|++.......+...++..+
T Consensus 95 ~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~-~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i 166 (389)
T 3acz_A 95 LQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDT-SDVEKVKAAWKP-NTKMVYLESPANPTCKVSDIKGI 166 (389)
T ss_dssp CCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECT-TCHHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHH
T ss_pred hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC-CCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHH
Confidence 57899988877755543333322 4567887777765 466777776654 56788776555445555565443
No 167
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=22.68 E-value=2.1e+02 Score=27.68 Aligned_cols=61 Identities=13% Similarity=-0.058 Sum_probs=41.1
Q ss_pred HHHHH--CCCCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEE
Q 006776 100 NYLKD--IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 163 (631)
Q Consensus 100 ~~L~~--~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~ 163 (631)
+.|.+ .++++|++|+|...-.+-..++.+|-.+.|+.++.+.. +.+.+ ..+++.+++.++.
T Consensus 175 ~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~ 237 (359)
T 1h2b_A 175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVD 237 (359)
T ss_dssp HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEE
T ss_pred HHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEe
Confidence 34556 78999999999998556666666665543876555543 34443 4556788887764
No 168
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=22.53 E-value=1.9e+02 Score=27.68 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=49.2
Q ss_pred eecHHHHHHHHHH---HHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEE
Q 006776 85 TLTYSQLLQQVCQ---LANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 161 (631)
Q Consensus 85 ~~Ty~eL~~~v~~---~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~i 161 (631)
.+++.+....... .-+.|...++++|++|+|.....+-.+++.+|- ..|+.++.+.. +.+.+ ..+++.+++.+
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~~ 214 (340)
T 3s2e_A 139 KVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKL-NLARRLGAEVA 214 (340)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHTTCSEE
T ss_pred CCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHH-HHHHHcCCCEE
Confidence 4677665433222 123455668999999999887666666666665 56886655543 34444 45677888887
Q ss_pred EEeC
Q 006776 162 ITSN 165 (631)
Q Consensus 162 i~~~ 165 (631)
+...
T Consensus 215 i~~~ 218 (340)
T 3s2e_A 215 VNAR 218 (340)
T ss_dssp EETT
T ss_pred EeCC
Confidence 7543
No 169
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=22.53 E-value=2.6e+02 Score=23.93 Aligned_cols=71 Identities=10% Similarity=0.102 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHH---HHHHHHhcCceEEEEeCC
Q 006776 94 QVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDS---LAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 94 ~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~---l~~~l~~~~~~~ii~~~~ 166 (631)
+...+...|.+.+ ++..+.|+++.....-.+.-.+-..|..+..+..+.+.++ +...++..+.+++++++.
T Consensus 32 K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 105 (185)
T 2jgn_A 32 KRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV 105 (185)
T ss_dssp HHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC-
T ss_pred HHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcCh
Confidence 4455566666653 5677888888665544444445556777788887766544 444556677888887764
No 170
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=22.34 E-value=54 Score=30.64 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=20.7
Q ss_pred HHHHHHHHHCCCCCCCEEEEEccCC
Q 006776 96 CQLANYLKDIGVKKGDAVIIYLPML 120 (631)
Q Consensus 96 ~~~A~~L~~~Gv~~gd~V~i~~~n~ 120 (631)
..+...|+++||++||.|.+...-+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 4557789999999999999988643
No 171
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=22.28 E-value=2.9e+02 Score=28.68 Aligned_cols=90 Identities=8% Similarity=-0.048 Sum_probs=59.2
Q ss_pred EEEcCchHHHHHHH--HHHHhcCCCCCcEEEEecccceecchhHHHHHhhhcCceEEEecCCCCCCC----hhHHHHHHH
Q 006776 258 VLHTTGGYMVHTAT--TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD----SGRSWDIVD 331 (631)
Q Consensus 258 v~~t~~~~l~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~vl~~~~~~~~~----~~~~~~~i~ 331 (631)
-.+|.+.+...... ......+++++|++...++-+.- ....+++++..|+..+..+......+ .+++..+++
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSE--FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 34676664332221 12234689999999888776543 34667899999999888754211001 567888999
Q ss_pred HhCCcEEeecHHHHHHHH
Q 006776 332 KYKVTIFYTAPTLVRSLM 349 (631)
Q Consensus 332 ~~~vt~l~~~P~~l~~l~ 349 (631)
..++..+.+.......+.
T Consensus 126 ~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HHCCSEEEECGGGHHHHH
T ss_pred hcCCCEEEecHHHHHHHH
Confidence 999999998876655443
No 172
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=22.00 E-value=3e+02 Score=28.42 Aligned_cols=63 Identities=19% Similarity=0.145 Sum_probs=45.7
Q ss_pred HHCC-CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCC
Q 006776 103 KDIG-VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA 166 (631)
Q Consensus 103 ~~~G-v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 166 (631)
.+.| +++|+.|.. ...+-....+.+||.+.|.-++.+-|...+..-...++..+++++++...
T Consensus 105 ~~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 168 (527)
T 3pc3_A 105 EEQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTE 168 (527)
T ss_dssp HHHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 3445 578887755 44556667777788999987776666555566678889999999998753
No 173
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=21.65 E-value=3.8e+02 Score=22.87 Aligned_cols=66 Identities=12% Similarity=0.068 Sum_probs=43.3
Q ss_pred hHHHHHHHhcCcccceEEEEee-ecC-C----CCeeEE--EEEEeCCCCCCcHHHHHHHHHHHHhhcCCCccCceE
Q 006776 513 TAEVESALVSHPQCAEAAVVGV-EHE-V----KGQGIY--AFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKI 580 (631)
Q Consensus 513 ~~eIE~~l~~~~~V~~~~vv~~-~~~-~----~~~~~~--~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i 580 (631)
-.|+++.|.++++|..|-|.-. |.. . ....+- +++.++++. .+.+....|+..+...++.. .|..|
T Consensus 90 e~ELartI~~i~gV~~ArVhl~lP~~~~~f~~~~~~~sASV~l~~~~g~-l~~~qv~~I~~LVa~SV~gL-~~e~V 163 (170)
T 2y9j_Y 90 EQRLEQSLQTMEGVLSARVHISYDIDAGENGRPPKPVHLSALAVYERGS-PLAHQISDIKRFLKNSFADV-DYDNI 163 (170)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEEECCCCCBTTBCCCCEEEEEEEEECTTC-CCGGGHHHHHHHHHHHSTTC-CGGGE
T ss_pred HHHHHHHHHcCCCeeEEEEEEEcCCCcCcccccCCCCcEEEEEEECCCC-CCHHHHHHHHHHHHHhcCCC-Cccce
Confidence 3679999999999999988544 433 1 112244 455556775 55566888999998887643 34433
No 174
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=21.63 E-value=2.7e+02 Score=26.73 Aligned_cols=74 Identities=19% Similarity=0.024 Sum_probs=45.4
Q ss_pred eecHHHHHHHHHHH---HHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEE
Q 006776 85 TLTYSQLLQQVCQL---ANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 161 (631)
Q Consensus 85 ~~Ty~eL~~~v~~~---A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~i 161 (631)
.+++.+........ -+.|.+.++++|++|+|...-.+-.+++.+|- ..|+.++.+...- +.+ ..+++.+++.+
T Consensus 149 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~--~~~-~~~~~lGa~~v 224 (348)
T 3two_A 149 NAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNE--HKK-QDALSMGVKHF 224 (348)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSS--TTH-HHHHHTTCSEE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCH--HHH-HHHHhcCCCee
Confidence 46776654322221 23456779999999999987545555555554 5788665554332 222 34566788877
Q ss_pred E
Q 006776 162 I 162 (631)
Q Consensus 162 i 162 (631)
+
T Consensus 225 ~ 225 (348)
T 3two_A 225 Y 225 (348)
T ss_dssp E
T ss_pred c
Confidence 7
No 175
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=21.62 E-value=2.7e+02 Score=27.11 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=37.2
Q ss_pred CCCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCC-----CCHHHHHHHHHhcCceEEEEeC
Q 006776 106 GVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG-----FSSDSLAQRIMDCKPKVVITSN 165 (631)
Q Consensus 106 Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~-----~~~~~l~~~l~~~~~~~ii~~~ 165 (631)
|+++||.|.+..+...... .++...|+.++.++.+ ...+.+...++. +.++|+...
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 136 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTY---YPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTVN 136 (390)
T ss_dssp SCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEEC
T ss_pred CCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEEC
Confidence 6889999888776655443 3555788766555432 367888877754 567777654
No 176
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=21.50 E-value=2.4e+02 Score=27.77 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=39.6
Q ss_pred HHHHCCCCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCC-----CCHHHHHHHHHhcCceEEEEeC
Q 006776 101 YLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG-----FSSDSLAQRIMDCKPKVVITSN 165 (631)
Q Consensus 101 ~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~-----~~~~~l~~~l~~~~~~~ii~~~ 165 (631)
.++.+++++||.|.+..+...... .++...|+.++.++.+ ...+.+...++. ++++|+.+.
T Consensus 73 ~~~~~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 138 (418)
T 2c81_A 73 ALEALGIGEGDEVIVPSLTWIATA---TAVLNVNALPVFVDVEADTYCIDPQLIKSAITD-KTKAIIPVH 138 (418)
T ss_dssp HHHHTTCCTTCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCT-TEEEECCBC
T ss_pred HHHHcCCCCcCEEEECCCccHhHH---HHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCC-CCeEEEEeC
Confidence 444556789999988877665553 3456788876665432 356777766653 567777654
No 177
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=21.47 E-value=1.8e+02 Score=20.96 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=32.3
Q ss_pred eeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCChHHHHHHHHHHHhCC
Q 006776 84 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGA 135 (631)
Q Consensus 84 ~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~ 135 (631)
..+.+.+|.+ .+.+++..+++.|.+++........+...+...|.
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 4566666653 34555778889999999888777777677777774
No 178
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=21.32 E-value=2.2e+02 Score=26.64 Aligned_cols=62 Identities=11% Similarity=0.146 Sum_probs=36.2
Q ss_pred chHHHHHHHhcCcccceEEEEeeecCCCCeeEEEEEEeCCCCCCc--HHHHHHHHHHHHhhcCC
Q 006776 512 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS--EELRKSLVLAVRKQIGA 573 (631)
Q Consensus 512 ~~~eIE~~l~~~~~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~i~~~~~~~l~~ 573 (631)
...+|++.+.++|+|.++-=+-...-.....+-+-|+++++.+.. .++.+++.+.++++++.
T Consensus 207 ~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~ 270 (283)
T 3h90_A 207 ERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG 270 (283)
T ss_dssp HHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 456788889999988765433332221222344555555543322 45667777778777764
No 179
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=21.16 E-value=3.3e+02 Score=26.63 Aligned_cols=71 Identities=11% Similarity=0.037 Sum_probs=44.4
Q ss_pred CCCCCEEEEEccCChHHHHHHH-HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~l-A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
+++||+|.+.-+......-.+- .+.+.|..+..++.. ..+.+...++. +.++|++.......+...++..+
T Consensus 102 ~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i 173 (392)
T 3qhx_A 102 LRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALA-DLDAVRAAIRP-TTRLIWVETPTNPLLSIADIAGI 173 (392)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTT-CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHH
T ss_pred hCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCC-CHHHHHHhhCC-CCeEEEEECCCCCCcEEecHHHH
Confidence 5789998887666544333321 224568877777664 67778777764 67788776555445555554443
No 180
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=21.01 E-value=5.9e+02 Score=24.89 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=33.1
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCC---CCCHHHHHHHHHh-------cCceEEE
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA---GFSSDSLAQRIMD-------CKPKVVI 162 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~---~~~~~~l~~~l~~-------~~~~~ii 162 (631)
.++||.|.+.-|....+. .++...|+.++.++. ....+.+...++. .++++|+
T Consensus 130 ~~~gd~Vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~ 192 (425)
T 1vp4_A 130 LDDESYCVLDDPAYLGAI---NAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIY 192 (425)
T ss_dssp CCTTCEEEEEESCCHHHH---HHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred CCCCCEEEEeCCCcHHHH---HHHHHcCCEEEEeccCCCCCCHHHHHHHHHhhhhcccCCCceEEE
Confidence 367888888777655543 334456766555432 1467788887775 3677764
No 181
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=20.94 E-value=3.9e+02 Score=26.02 Aligned_cols=70 Identities=9% Similarity=0.027 Sum_probs=37.7
Q ss_pred CCCCCEEEEEccCChHHHHHH--HHHHHhCCEEEecCC----CCCHHHHHHHHHhcCceEEEEeCCcccCCcccccHH
Q 006776 107 VKKGDAVIIYLPMLMELPIAM--LACARIGAVHSVVFA----GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 178 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~--lA~~~~G~v~v~l~~----~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~ 178 (631)
+++||.|.+..+......... +.....+..+++++. ....+.+...+...++++|++.... ++...++..
T Consensus 108 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~--~G~~~~l~~ 183 (417)
T 3n0l_A 108 INPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASA--YARVIDFAK 183 (417)
T ss_dssp SCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSS--CCSCCCHHH
T ss_pred cCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCcc--cCccCCHHH
Confidence 578999998887554332211 122224444444432 2578899999986688888876544 245555433
No 182
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=20.92 E-value=3.4e+02 Score=26.35 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=43.7
Q ss_pred CCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhc-----CceEEEEeCCcccCCcccccH
Q 006776 107 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDC-----KPKVVITSNAVKRGPKAIHLK 177 (631)
Q Consensus 107 v~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~-----~~~~ii~~~~~~~~~~~~~~~ 177 (631)
.++||.|.+-.+..... .-++...|+.++.++. ...+.+...++.. ++++|+++......+...++.
T Consensus 126 ~~~gd~v~~~~~~~~~~---~~~~~~~g~~~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~ 197 (401)
T 1fc4_A 126 LGAEDAIISDALNHASI---IDGVRLCKAKRYRYAN-NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLK 197 (401)
T ss_dssp CCTTCEEEEETTCCHHH---HHHHHTSCSEEEEECT-TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHH
T ss_pred cCCCCEEEEcchhHHHH---HHHHHHcCCceEEECC-CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHH
Confidence 46889887766654332 2355677888777753 4678888888763 678888776544455555543
No 183
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} SCOP: e.60.1.1
Probab=20.89 E-value=1.2e+02 Score=30.38 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHH--CCCCCCCEEEEEccCC-hHHHHHH-HHHHHhCCEEEecC
Q 006776 91 LLQQVCQLANYLKD--IGVKKGDAVIIYLPML-MELPIAM-LACARIGAVHSVVF 141 (631)
Q Consensus 91 L~~~v~~~A~~L~~--~Gv~~gd~V~i~~~n~-~~~~v~~-lA~~~~G~v~v~l~ 141 (631)
+..+..++|..|.+ .++++|+.|.|..+-. .+++-++ -++.++|+.++.+.
T Consensus 7 ~~~~l~k~A~~lV~~~~~lq~Ge~VlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 61 (418)
T 1zjc_A 7 YKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVV 61 (418)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 45677788888876 4689999999999854 4444333 37888888766543
No 184
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=20.70 E-value=2.1e+02 Score=28.32 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=40.1
Q ss_pred CCCCC--EEEEEccCChHHHHHHHHHHHhCC--EEEecCC-C--CCHHHHHHHHHhcCceEEEEeCCcccCCcccc
Q 006776 107 VKKGD--AVIIYLPMLMELPIAMLACARIGA--VHSVVFA-G--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 175 (631)
Q Consensus 107 v~~gd--~V~i~~~n~~~~~v~~lA~~~~G~--v~v~l~~-~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 175 (631)
+++|| .|.+..|....+. .++...|+ +.+++++ + ...+.+...++..++++++.+......+...+
T Consensus 128 ~~~gd~~~Vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~ 200 (437)
T 3g0t_A 128 THKNREYGTLFIDPGFNLNK---LQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMT 200 (437)
T ss_dssp SCTTCSCCEEEEESCCHHHH---HHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCC
T ss_pred CCCCCccEEEEeCCCcHhHH---HHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCC
Confidence 37899 8888877665543 33445565 4455532 2 35778888886678888876544333343333
No 185
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=20.67 E-value=61 Score=30.43 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.0
Q ss_pred HHHHHHHHCCCCCCCEEEEEccCC
Q 006776 97 QLANYLKDIGVKKGDAVIIYLPML 120 (631)
Q Consensus 97 ~~A~~L~~~Gv~~gd~V~i~~~n~ 120 (631)
.+...|+++||++||.|.+...-+
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl~ 40 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSLS 40 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECSG
T ss_pred HHHHHHHHcCCCCCCEEEEEechH
Confidence 357789999999999999988644
No 186
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=20.64 E-value=62 Score=30.53 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=24.8
Q ss_pred CceeeecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCC
Q 006776 81 GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML 120 (631)
Q Consensus 81 ~~~~~~Ty~eL~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~ 120 (631)
+....+|-.+| ...|+++||++||.|.+...-+
T Consensus 17 ~~~~~~T~~~L-------~~~L~~LGI~~Gd~llVHsSL~ 49 (286)
T 3sma_A 17 QDRELVTRDRL-------ASDLAALGVRPGGVLLVHASLS 49 (286)
T ss_dssp --CCEECHHHH-------HHHHHHHTCCTTCEEEEEECST
T ss_pred ccCCCcCHHHH-------HHHHHHcCCCCCCEEEEEechH
Confidence 44567886655 6678999999999999988643
No 187
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=20.56 E-value=4.3e+02 Score=25.59 Aligned_cols=68 Identities=12% Similarity=0.005 Sum_probs=43.3
Q ss_pred CCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhc---CceEEEEeCCcccCCcccccHHH
Q 006776 108 KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDC---KPKVVITSNAVKRGPKAIHLKDI 179 (631)
Q Consensus 108 ~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~---~~~~ii~~~~~~~~~~~~~~~~~ 179 (631)
++||.|.+--+...... .++...|+.++.++.+ ..+.+...++.. ++++++++......+...++..+
T Consensus 130 ~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~-d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i 200 (401)
T 2bwn_A 130 FPGLIIYSDSLNHASMI---EGIKRNAGPKRIFRHN-DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEI 200 (401)
T ss_dssp STTCEEEEETTCCHHHH---HHHHHSCCCEEEECTT-CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHH
T ss_pred CCCCEEEECchhhHHHH---HHHHHcCCeEEEEcCC-CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHH
Confidence 47888877766554443 3445678777666654 678888888753 56777776655445555564433
No 188
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=20.33 E-value=2.1e+02 Score=28.91 Aligned_cols=77 Identities=18% Similarity=0.106 Sum_probs=46.5
Q ss_pred eecHHHHHHHHHHHHH---HHHH---CCCCCCCEEEEEccCChHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCc
Q 006776 85 TLTYSQLLQQVCQLAN---YLKD---IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKP 158 (631)
Q Consensus 85 ~~Ty~eL~~~v~~~A~---~L~~---~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~ 158 (631)
.+++.+........+. .|.. .++++|++|+|....+.--..+...+...|+..+.+.. +.+.+ ..+++.++
T Consensus 198 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~--~~~~~-~~~~~lGa 274 (456)
T 3krt_A 198 HLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVS--SPQKA-EICRAMGA 274 (456)
T ss_dssp TSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES--SHHHH-HHHHHHTC
T ss_pred CCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC--CHHHH-HHHHhhCC
Confidence 4677776532222222 2322 57999999999998554444444444567887665543 44554 45577888
Q ss_pred eEEEEe
Q 006776 159 KVVITS 164 (631)
Q Consensus 159 ~~ii~~ 164 (631)
+.++..
T Consensus 275 ~~vi~~ 280 (456)
T 3krt_A 275 EAIIDR 280 (456)
T ss_dssp CEEEET
T ss_pred cEEEec
Confidence 877653
Done!