Query 006778
Match_columns 631
No_of_seqs 599 out of 4121
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 14:21:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2415 Electron transfer flav 100.0 8E-134 2E-138 1003.2 40.6 530 100-631 69-621 (621)
2 COG0644 FixC Dehydrogenases (f 100.0 1.1E-42 2.3E-47 374.7 35.6 390 106-552 2-394 (396)
3 PRK10015 oxidoreductase; Provi 100.0 8.5E-41 1.8E-45 362.5 36.6 369 107-507 5-397 (429)
4 PRK10157 putative oxidoreducta 100.0 2.1E-38 4.5E-43 344.2 35.8 368 106-506 4-395 (428)
5 PLN00093 geranylgeranyl diphos 100.0 1.2E-29 2.6E-34 275.9 36.9 338 104-486 36-385 (450)
6 TIGR02028 ChlP geranylgeranyl 100.0 4.2E-29 9.2E-34 269.0 34.5 332 108-486 1-346 (398)
7 TIGR02023 BchP-ChlP geranylger 100.0 5.8E-29 1.3E-33 267.7 33.9 325 108-485 1-335 (388)
8 TIGR02032 GG-red-SF geranylger 100.0 1.7E-28 3.7E-33 253.5 32.2 293 108-449 1-295 (295)
9 COG0654 UbiH 2-polyprenyl-6-me 100.0 6.3E-28 1.4E-32 259.4 32.0 336 107-486 2-351 (387)
10 PRK07045 putative monooxygenas 100.0 1.5E-27 3.2E-32 256.9 33.7 341 106-486 4-359 (388)
11 PRK06617 2-octaprenyl-6-methox 100.0 8.6E-28 1.9E-32 257.3 30.4 328 108-486 2-339 (374)
12 PF01494 FAD_binding_3: FAD bi 100.0 1.6E-28 3.5E-33 260.2 23.5 330 107-474 1-352 (356)
13 PRK08013 oxidoreductase; Provi 100.0 1.2E-27 2.6E-32 258.5 30.5 336 107-486 3-358 (400)
14 PRK07538 hypothetical protein; 100.0 2.4E-27 5.2E-32 257.3 31.6 335 108-482 1-363 (413)
15 PRK08244 hypothetical protein; 100.0 7.1E-27 1.5E-31 259.2 34.1 338 106-486 1-345 (493)
16 PRK06753 hypothetical protein; 100.0 3.2E-27 7E-32 252.9 30.1 331 109-487 2-340 (373)
17 PRK08163 salicylate hydroxylas 100.0 4.7E-27 1E-31 253.8 31.4 338 106-487 3-358 (396)
18 PRK07333 2-octaprenyl-6-methox 100.0 2.7E-27 5.8E-32 256.2 28.4 337 108-486 2-356 (403)
19 PRK08243 4-hydroxybenzoate 3-m 100.0 4.9E-27 1.1E-31 253.1 29.8 340 107-486 2-351 (392)
20 PRK05714 2-octaprenyl-3-methyl 100.0 3.2E-27 7E-32 255.8 28.4 336 106-487 1-362 (405)
21 PRK08773 2-octaprenyl-3-methyl 100.0 4.8E-27 1E-31 253.3 29.5 321 106-469 5-342 (392)
22 TIGR01988 Ubi-OHases Ubiquinon 100.0 7.8E-27 1.7E-31 250.9 30.1 334 109-486 1-352 (385)
23 PRK07364 2-octaprenyl-6-methox 100.0 6.2E-27 1.3E-31 254.4 29.2 341 105-486 16-370 (415)
24 PRK06847 hypothetical protein; 100.0 1.6E-26 3.6E-31 247.6 31.7 328 107-485 4-351 (375)
25 PRK07588 hypothetical protein; 100.0 1.6E-26 3.4E-31 249.2 31.1 336 108-487 1-351 (391)
26 PRK06185 hypothetical protein; 100.0 1.7E-26 3.8E-31 250.2 31.6 339 105-485 4-357 (407)
27 PRK05868 hypothetical protein; 100.0 1.9E-26 4.2E-31 246.3 30.3 332 109-486 3-353 (372)
28 PRK06183 mhpA 3-(3-hydroxyphen 100.0 2.6E-26 5.7E-31 257.1 32.2 340 106-486 9-359 (538)
29 PRK09126 hypothetical protein; 100.0 7.8E-27 1.7E-31 251.7 26.9 336 106-486 2-356 (392)
30 TIGR01989 COQ6 Ubiquinone bios 100.0 2.4E-26 5.2E-31 251.0 30.7 341 108-486 1-409 (437)
31 TIGR01984 UbiH 2-polyprenyl-6- 100.0 1.7E-26 3.7E-31 248.1 28.3 331 109-486 1-349 (382)
32 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 2.3E-26 5E-31 247.4 28.9 342 106-486 1-351 (390)
33 PRK08132 FAD-dependent oxidore 100.0 4.5E-26 9.8E-31 255.8 32.1 339 105-485 21-371 (547)
34 PRK08850 2-octaprenyl-6-methox 100.0 2.4E-26 5.3E-31 248.8 28.3 335 107-486 4-358 (405)
35 PLN02985 squalene monooxygenas 100.0 1.8E-25 4E-30 246.9 35.5 361 104-505 40-423 (514)
36 PRK06996 hypothetical protein; 100.0 1E-25 2.2E-30 243.3 32.4 335 105-487 9-362 (398)
37 PRK07494 2-octaprenyl-6-methox 100.0 2.8E-26 6.2E-31 247.0 27.1 334 105-485 5-352 (388)
38 PRK06184 hypothetical protein; 99.9 1.3E-25 2.8E-30 249.7 32.2 337 107-484 3-351 (502)
39 PRK08849 2-octaprenyl-3-methyl 99.9 1.5E-25 3.2E-30 240.9 31.6 336 107-487 3-351 (384)
40 PF05187 ETF_QO: Electron tran 99.9 1.6E-29 3.4E-34 213.9 0.3 95 488-582 1-95 (110)
41 PRK08294 phenol 2-monooxygenas 99.9 3.1E-25 6.8E-30 250.9 34.5 349 106-487 31-414 (634)
42 PRK06834 hypothetical protein; 99.9 2.9E-25 6.3E-30 244.6 32.6 324 107-485 3-337 (488)
43 PRK06475 salicylate hydroxylas 99.9 2.6E-25 5.6E-30 240.4 31.6 330 108-479 3-354 (400)
44 PRK07608 ubiquinone biosynthes 99.9 1.5E-25 3.2E-30 241.4 29.1 336 106-486 4-355 (388)
45 PRK07236 hypothetical protein; 99.9 2E-25 4.3E-30 240.2 29.3 329 106-484 5-374 (386)
46 PRK08020 ubiF 2-octaprenyl-3-m 99.9 1.8E-25 3.8E-30 241.1 28.9 335 106-485 4-356 (391)
47 PTZ00367 squalene epoxidase; P 99.9 4.2E-25 9.1E-30 245.1 32.4 364 106-505 32-437 (567)
48 TIGR03219 salicylate_mono sali 99.9 3.3E-25 7.2E-30 240.7 29.5 337 109-486 2-374 (414)
49 PRK07190 hypothetical protein; 99.9 6.6E-25 1.4E-29 241.5 31.3 328 106-485 4-347 (487)
50 PRK06126 hypothetical protein; 99.9 1.1E-24 2.3E-29 244.8 32.3 332 105-481 5-371 (545)
51 PRK05732 2-octaprenyl-6-methox 99.9 8.8E-25 1.9E-29 235.9 30.4 339 106-487 2-359 (395)
52 PRK11445 putative oxidoreducta 99.9 5.7E-23 1.2E-27 218.1 32.3 306 108-469 2-316 (351)
53 PLN02927 antheraxanthin epoxid 99.9 4.2E-23 9E-28 230.3 31.2 334 104-485 78-446 (668)
54 PLN02463 lycopene beta cyclase 99.9 7.6E-23 1.6E-27 221.6 29.0 291 106-455 27-334 (447)
55 TIGR01790 carotene-cycl lycope 99.9 3.4E-22 7.5E-27 215.2 34.0 306 109-469 1-318 (388)
56 KOG2614 Kynurenine 3-monooxyge 99.9 8.5E-24 1.8E-28 216.3 16.9 300 108-455 3-328 (420)
57 PLN02697 lycopene epsilon cycl 99.9 1.1E-21 2.3E-26 215.7 34.5 306 106-469 107-439 (529)
58 COG2440 FixX Ferredoxin-like p 99.9 1.5E-24 3.3E-29 175.2 3.7 83 545-630 11-98 (99)
59 PRK08255 salicylyl-CoA 5-hydro 99.9 1E-21 2.3E-26 227.3 21.1 324 109-486 2-340 (765)
60 PF04820 Trp_halogenase: Trypt 99.9 4.9E-20 1.1E-24 200.9 23.9 222 205-469 147-370 (454)
61 KOG1298 Squalene monooxygenase 99.8 1.2E-18 2.5E-23 175.2 22.4 300 105-451 43-362 (509)
62 PF05834 Lycopene_cycl: Lycope 99.8 1.7E-17 3.7E-22 177.4 29.3 283 109-451 1-290 (374)
63 TIGR01789 lycopene_cycl lycope 99.8 9.2E-17 2E-21 171.2 31.1 295 109-465 1-302 (370)
64 PRK15449 ferredoxin-like prote 99.8 3.1E-19 6.7E-24 147.5 3.7 76 551-630 14-94 (95)
65 KOG3855 Monooxygenase involved 99.7 4E-16 8.7E-21 158.8 20.4 332 106-467 35-428 (481)
66 PRK04176 ribulose-1,5-biphosph 99.7 1.5E-15 3.3E-20 153.2 18.0 156 105-295 23-183 (257)
67 TIGR00292 thiazole biosynthesi 99.7 2.2E-15 4.8E-20 151.6 17.4 164 105-298 19-183 (254)
68 PF01946 Thi4: Thi4 family; PD 99.6 2.4E-15 5.2E-20 142.6 9.9 157 105-296 15-176 (230)
69 COG1635 THI4 Ribulose 1,5-bisp 99.6 4.5E-14 9.7E-19 132.9 15.8 155 105-294 28-187 (262)
70 COG2081 Predicted flavoprotein 99.5 2.4E-13 5.3E-18 139.7 15.2 163 106-299 2-188 (408)
71 PF01266 DAO: FAD dependent ox 99.5 3.2E-12 7E-17 135.4 22.1 162 109-298 1-213 (358)
72 PRK00711 D-amino acid dehydrog 99.5 1.6E-11 3.4E-16 133.7 25.9 71 208-298 197-267 (416)
73 TIGR01373 soxB sarcosine oxida 99.4 3.9E-11 8.4E-16 130.2 26.2 72 208-298 179-250 (407)
74 PLN02661 Putative thiazole syn 99.4 1.2E-11 2.5E-16 128.1 19.2 151 105-289 90-248 (357)
75 PF03486 HI0933_like: HI0933-l 99.4 1.6E-12 3.4E-17 139.3 12.6 157 108-299 1-187 (409)
76 PRK08274 tricarballylate dehyd 99.4 4E-12 8.7E-17 140.4 15.4 197 106-321 3-231 (466)
77 COG0579 Predicted dehydrogenas 99.4 3.5E-11 7.5E-16 127.9 20.8 171 106-299 2-222 (429)
78 PRK12409 D-amino acid dehydrog 99.4 2.7E-10 5.8E-15 123.8 27.6 75 209-298 194-268 (410)
79 PRK11259 solA N-methyltryptoph 99.4 1.5E-10 3.3E-15 124.1 24.4 60 208-285 145-204 (376)
80 PRK11101 glpA sn-glycerol-3-ph 99.4 2.3E-10 5.1E-15 128.3 26.8 78 207-298 144-221 (546)
81 TIGR03329 Phn_aa_oxid putative 99.3 5.7E-11 1.2E-15 130.8 20.3 62 206-286 177-238 (460)
82 TIGR01813 flavo_cyto_c flavocy 99.3 1.1E-11 2.3E-16 136.0 14.1 194 109-321 1-230 (439)
83 PF12831 FAD_oxidored: FAD dep 99.3 1.1E-12 2.3E-17 142.9 5.8 141 109-283 1-148 (428)
84 TIGR01377 soxA_mon sarcosine o 99.3 3.7E-10 8E-15 121.3 25.4 72 206-298 139-210 (380)
85 PRK01747 mnmC bifunctional tRN 99.3 1.1E-10 2.5E-15 134.1 22.7 156 107-286 260-464 (662)
86 COG0665 DadA Glycine/D-amino a 99.3 1.9E-10 4.2E-15 123.7 22.8 203 206-452 150-367 (387)
87 PF00890 FAD_binding_2: FAD bi 99.3 3.1E-11 6.7E-16 131.4 15.4 160 109-286 1-204 (417)
88 PRK11728 hydroxyglutarate oxid 99.3 3.3E-10 7.1E-15 122.4 23.1 167 107-298 2-214 (393)
89 PRK06481 fumarate reductase fl 99.3 5.3E-11 1.1E-15 132.4 17.3 197 105-321 59-289 (506)
90 PLN00128 Succinate dehydrogena 99.3 2.6E-11 5.6E-16 137.5 14.8 195 105-326 48-281 (635)
91 PRK12266 glpD glycerol-3-phosp 99.3 1E-09 2.3E-14 122.0 26.9 65 209-285 152-216 (508)
92 PRK12845 3-ketosteroid-delta-1 99.3 1.9E-11 4.1E-16 137.1 12.3 97 212-322 217-318 (564)
93 PRK06452 sdhA succinate dehydr 99.3 8.6E-12 1.9E-16 140.3 9.5 189 106-322 4-225 (566)
94 PRK05192 tRNA uridine 5-carbox 99.3 3.2E-11 6.8E-16 133.3 13.5 148 106-285 3-157 (618)
95 PLN02464 glycerol-3-phosphate 99.3 2.4E-09 5.2E-14 121.7 28.7 76 208-296 228-304 (627)
96 PRK07121 hypothetical protein; 99.3 9E-11 2E-15 130.4 16.8 98 211-321 176-277 (492)
97 PTZ00139 Succinate dehydrogena 99.3 1.3E-10 2.8E-15 131.9 18.1 166 105-287 27-231 (617)
98 PRK08958 sdhA succinate dehydr 99.3 1.1E-10 2.4E-15 131.7 17.3 189 106-321 6-232 (588)
99 KOG1335 Dihydrolipoamide dehyd 99.2 1.3E-10 2.9E-15 117.7 15.3 53 106-164 38-90 (506)
100 PF13738 Pyr_redox_3: Pyridine 99.2 1.6E-11 3.5E-16 119.7 8.1 137 111-286 1-139 (203)
101 PF01134 GIDA: Glucose inhibit 99.2 9.2E-11 2E-15 123.3 14.1 143 109-283 1-150 (392)
102 PRK07057 sdhA succinate dehydr 99.2 2.1E-10 4.6E-15 129.6 18.1 66 212-287 148-213 (591)
103 PRK08275 putative oxidoreducta 99.2 7.3E-11 1.6E-15 132.8 14.2 169 104-287 6-202 (554)
104 PRK09078 sdhA succinate dehydr 99.2 2.3E-10 4.9E-15 129.6 18.1 90 212-321 149-238 (598)
105 PRK12835 3-ketosteroid-delta-1 99.2 1.9E-10 4E-15 129.8 16.9 95 214-321 215-314 (584)
106 PRK07804 L-aspartate oxidase; 99.2 2.5E-10 5.5E-15 127.9 17.4 169 104-287 13-212 (541)
107 PRK13369 glycerol-3-phosphate 99.2 1.2E-08 2.6E-13 113.6 30.1 65 208-285 151-215 (502)
108 PRK12837 3-ketosteroid-delta-1 99.2 6E-11 1.3E-15 132.2 11.3 95 213-321 174-273 (513)
109 PRK12839 hypothetical protein; 99.2 2.3E-10 5E-15 128.7 15.4 100 209-321 211-317 (572)
110 PRK06263 sdhA succinate dehydr 99.2 9.6E-11 2.1E-15 131.5 12.3 165 104-286 4-198 (543)
111 PRK07573 sdhA succinate dehydr 99.2 2.7E-10 5.9E-15 129.6 16.1 85 216-321 174-258 (640)
112 PRK12834 putative FAD-binding 99.2 1.9E-10 4.1E-15 129.3 14.5 207 106-321 3-270 (549)
113 COG1249 Lpd Pyruvate/2-oxoglut 99.2 7.7E-11 1.7E-15 127.4 10.7 144 105-286 2-148 (454)
114 PRK06175 L-aspartate oxidase; 99.2 1.1E-10 2.5E-15 127.1 11.5 160 106-286 3-190 (433)
115 PLN02815 L-aspartate oxidase 99.2 1.6E-10 3.4E-15 130.1 12.9 191 104-322 26-249 (594)
116 PRK08641 sdhA succinate dehydr 99.2 2.7E-10 5.9E-15 128.7 14.7 188 107-321 3-226 (589)
117 PTZ00306 NADH-dependent fumara 99.2 1.1E-10 2.4E-15 141.1 12.3 203 104-321 406-661 (1167)
118 PRK06467 dihydrolipoamide dehy 99.2 2.7E-10 5.8E-15 125.8 14.0 56 106-167 3-58 (471)
119 PRK08205 sdhA succinate dehydr 99.2 6.9E-10 1.5E-14 125.5 17.3 67 211-287 139-208 (583)
120 PTZ00383 malate:quinone oxidor 99.1 7.5E-10 1.6E-14 121.8 16.6 72 207-298 206-283 (497)
121 TIGR01320 mal_quin_oxido malat 99.1 7.1E-10 1.5E-14 122.2 16.4 79 206-298 172-250 (483)
122 TIGR01812 sdhA_frdA_Gneg succi 99.1 3.2E-10 7E-15 128.1 13.7 89 212-321 129-217 (566)
123 TIGR01424 gluta_reduc_2 glutat 99.1 9.5E-11 2.1E-15 128.6 9.0 142 107-286 2-143 (446)
124 PLN02546 glutathione reductase 99.1 3E-10 6.5E-15 126.9 12.7 143 106-286 78-229 (558)
125 PRK09231 fumarate reductase fl 99.1 3.5E-10 7.7E-15 127.6 13.3 167 105-287 2-198 (582)
126 PRK05945 sdhA succinate dehydr 99.1 9.2E-10 2E-14 124.4 16.5 166 106-287 2-199 (575)
127 PLN02172 flavin-containing mon 99.1 7.8E-10 1.7E-14 121.1 15.1 154 106-285 9-173 (461)
128 TIGR03315 Se_ygfK putative sel 99.1 2.4E-08 5.2E-13 116.9 27.7 41 107-153 537-577 (1012)
129 PRK12842 putative succinate de 99.1 1E-09 2.3E-14 124.0 16.0 96 212-320 214-315 (574)
130 PTZ00058 glutathione reductase 99.1 1.1E-10 2.4E-15 130.3 7.9 53 106-165 47-99 (561)
131 TIGR01176 fum_red_Fp fumarate 99.1 4.9E-10 1.1E-14 126.2 13.0 189 107-321 3-221 (580)
132 PF08491 SE: Squalene epoxidas 99.1 8E-09 1.7E-13 102.9 20.0 208 274-505 2-226 (276)
133 PRK05976 dihydrolipoamide dehy 99.1 4.6E-10 9.9E-15 124.1 12.4 54 106-166 3-56 (472)
134 PRK08401 L-aspartate oxidase; 99.1 4.6E-10 1E-14 123.7 12.4 156 108-288 2-178 (466)
135 PRK12843 putative FAD-binding 99.1 7.6E-10 1.7E-14 125.0 14.2 96 211-320 220-319 (578)
136 TIGR01421 gluta_reduc_1 glutat 99.1 4.7E-10 1E-14 123.1 12.1 140 107-286 2-142 (450)
137 PRK06069 sdhA succinate dehydr 99.1 1.6E-09 3.5E-14 122.5 16.7 165 105-287 3-202 (577)
138 KOG2404 Fumarate reductase, fl 99.1 2.4E-10 5.2E-15 113.2 8.6 192 109-327 11-251 (477)
139 COG2072 TrkA Predicted flavopr 99.1 1.8E-09 3.8E-14 117.8 16.3 161 105-337 6-170 (443)
140 PRK06134 putative FAD-binding 99.1 1.2E-09 2.5E-14 123.6 15.4 98 210-320 215-318 (581)
141 COG0578 GlpA Glycerol-3-phosph 99.1 1.9E-08 4.1E-13 109.3 23.9 171 106-298 11-235 (532)
142 PRK12844 3-ketosteroid-delta-1 99.1 6E-10 1.3E-14 125.2 12.9 96 212-321 208-308 (557)
143 PRK07803 sdhA succinate dehydr 99.1 2.5E-09 5.4E-14 121.7 18.0 165 105-287 6-215 (626)
144 PRK06854 adenylylsulfate reduc 99.1 7.4E-10 1.6E-14 125.6 13.5 166 105-286 9-196 (608)
145 TIGR02730 carot_isom carotene 99.1 5E-08 1.1E-12 108.6 27.8 62 212-289 229-290 (493)
146 TIGR01811 sdhA_Bsu succinate d 99.1 8.3E-10 1.8E-14 124.9 13.8 90 212-321 129-222 (603)
147 PRK06115 dihydrolipoamide dehy 99.1 9.3E-10 2E-14 121.4 13.8 54 107-166 3-56 (466)
148 PRK05257 malate:quinone oxidor 99.1 4.2E-09 9.2E-14 116.2 18.7 79 206-298 177-256 (494)
149 PRK09077 L-aspartate oxidase; 99.1 9.5E-10 2.1E-14 123.2 13.6 189 105-321 6-233 (536)
150 PRK05249 soluble pyridine nucl 99.1 3.4E-10 7.3E-15 124.9 9.9 146 106-286 4-150 (461)
151 TIGR00551 nadB L-aspartate oxi 99.1 7.3E-10 1.6E-14 122.9 12.2 160 107-287 2-191 (488)
152 PRK08626 fumarate reductase fl 99.1 2E-09 4.3E-14 122.9 15.9 87 212-319 158-244 (657)
153 PRK06370 mercuric reductase; V 99.1 1E-09 2.3E-14 121.0 13.3 55 105-166 3-57 (463)
154 PRK06116 glutathione reductase 99.1 2.3E-10 4.9E-15 125.9 7.7 53 106-165 3-55 (450)
155 PRK06416 dihydrolipoamide dehy 99.1 1.3E-09 2.9E-14 120.2 13.8 54 106-166 3-56 (462)
156 TIGR00136 gidA glucose-inhibit 99.1 9.3E-10 2E-14 121.6 12.4 148 108-285 1-154 (617)
157 PRK12771 putative glutamate sy 99.1 9.8E-09 2.1E-13 116.0 20.9 41 107-153 137-177 (564)
158 KOG2820 FAD-dependent oxidored 99.1 4.1E-09 8.8E-14 105.7 15.3 161 104-285 4-212 (399)
159 PRK07395 L-aspartate oxidase; 99.1 8.8E-10 1.9E-14 123.5 12.0 162 105-286 7-198 (553)
160 COG0492 TrxB Thioredoxin reduc 99.0 1.6E-09 3.5E-14 111.6 13.0 114 106-286 2-116 (305)
161 PRK07843 3-ketosteroid-delta-1 99.0 5.6E-09 1.2E-13 117.5 18.4 95 213-321 209-308 (557)
162 TIGR01292 TRX_reduct thioredox 99.0 1.9E-09 4.1E-14 111.6 13.5 113 108-286 1-113 (300)
163 TIGR02061 aprA adenosine phosp 99.0 1.6E-09 3.5E-14 122.0 13.2 161 109-286 1-192 (614)
164 PRK13339 malate:quinone oxidor 99.0 5.6E-09 1.2E-13 114.5 17.0 79 206-298 178-257 (497)
165 TIGR02734 crtI_fam phytoene de 99.0 9.3E-08 2E-12 106.8 27.0 61 212-288 219-279 (502)
166 TIGR03364 HpnW_proposed FAD de 99.0 2.7E-09 5.9E-14 114.0 13.8 150 108-285 1-197 (365)
167 PRK06327 dihydrolipoamide dehy 99.0 2E-09 4.4E-14 119.0 13.1 53 106-164 3-61 (475)
168 PRK14727 putative mercuric red 99.0 4.4E-09 9.6E-14 116.4 15.1 59 101-165 10-68 (479)
169 PRK08071 L-aspartate oxidase; 99.0 4.1E-09 8.9E-14 117.3 14.6 159 107-286 3-191 (510)
170 PRK07251 pyridine nucleotide-d 99.0 4.5E-09 9.9E-14 115.1 14.2 52 107-164 3-55 (438)
171 PRK15317 alkyl hydroperoxide r 99.0 4.2E-09 9.2E-14 117.7 14.0 114 105-285 209-322 (517)
172 TIGR02485 CobZ_N-term precorri 99.0 4.7E-09 1E-13 114.8 13.6 189 112-321 1-222 (432)
173 PRK14694 putative mercuric red 99.0 6.9E-09 1.5E-13 114.6 15.0 55 105-166 4-58 (468)
174 PRK07233 hypothetical protein; 99.0 2.5E-07 5.4E-12 101.1 27.2 38 109-152 1-38 (434)
175 KOG1399 Flavin-containing mono 99.0 4E-09 8.6E-14 113.7 12.3 147 105-284 4-152 (448)
176 TIGR01423 trypano_reduc trypan 99.0 2.3E-09 4.9E-14 118.4 10.6 57 106-167 2-66 (486)
177 PLN02507 glutathione reductase 98.9 2.4E-09 5.2E-14 118.8 10.3 54 106-165 24-86 (499)
178 PRK13748 putative mercuric red 98.9 8.6E-09 1.9E-13 116.6 15.0 54 106-166 97-150 (561)
179 PF00743 FMO-like: Flavin-bind 98.9 9.5E-09 2.1E-13 114.1 14.8 144 109-286 3-151 (531)
180 PRK08010 pyridine nucleotide-d 98.9 6.8E-09 1.5E-13 113.8 13.2 51 107-163 3-54 (441)
181 TIGR03143 AhpF_homolog putativ 98.9 7.7E-09 1.7E-13 116.4 13.4 112 107-286 4-115 (555)
182 TIGR01438 TGR thioredoxin and 98.9 2.4E-09 5.3E-14 118.3 9.2 146 107-286 2-156 (484)
183 TIGR00275 flavoprotein, HI0933 98.9 1.6E-08 3.4E-13 109.4 14.8 147 111-285 1-160 (400)
184 TIGR02053 MerA mercuric reduct 98.9 5.8E-09 1.3E-13 115.1 11.6 52 108-166 1-52 (463)
185 TIGR03140 AhpF alkyl hydropero 98.9 1.1E-08 2.4E-13 114.2 13.8 114 105-285 210-323 (515)
186 PTZ00052 thioredoxin reductase 98.9 5E-09 1.1E-13 116.4 9.8 52 107-164 5-64 (499)
187 PTZ00153 lipoamide dehydrogena 98.9 2.2E-08 4.8E-13 113.6 15.0 58 105-168 114-172 (659)
188 PRK07818 dihydrolipoamide dehy 98.9 1.2E-08 2.6E-13 112.7 12.7 51 107-164 4-54 (466)
189 TIGR01350 lipoamide_DH dihydro 98.9 5.7E-09 1.2E-13 115.2 10.1 51 107-164 1-51 (461)
190 TIGR03452 mycothione_red mycot 98.9 5.6E-09 1.2E-13 114.7 8.7 51 107-166 2-52 (452)
191 PRK07512 L-aspartate oxidase; 98.8 3.7E-08 8.1E-13 109.7 14.8 63 212-287 136-199 (513)
192 PLN02612 phytoene desaturase 98.8 6.9E-07 1.5E-11 100.8 25.1 56 213-283 309-364 (567)
193 PRK13800 putative oxidoreducta 98.8 3E-08 6.5E-13 117.5 14.7 197 104-321 10-238 (897)
194 PRK06292 dihydrolipoamide dehy 98.8 3.5E-08 7.5E-13 108.9 13.6 53 106-165 2-54 (460)
195 PRK06912 acoL dihydrolipoamide 98.8 3.8E-08 8.2E-13 108.5 13.8 52 109-167 2-53 (458)
196 KOG2852 Possible oxidoreductas 98.8 1.4E-07 3E-12 92.8 15.7 167 107-286 10-209 (380)
197 PRK07846 mycothione reductase; 98.8 1.6E-08 3.5E-13 111.0 10.2 52 107-167 1-52 (451)
198 TIGR00562 proto_IX_ox protopor 98.8 2.5E-06 5.5E-11 94.1 27.3 42 108-153 3-46 (462)
199 PRK13977 myosin-cross-reactive 98.8 1.4E-07 3.1E-12 103.7 16.9 65 212-286 226-294 (576)
200 TIGR02731 phytoene_desat phyto 98.8 1.6E-06 3.5E-11 95.5 25.0 63 212-284 213-275 (453)
201 COG3380 Predicted NAD/FAD-depe 98.8 5.7E-08 1.2E-12 94.8 11.5 141 109-283 3-158 (331)
202 PRK07845 flavoprotein disulfid 98.8 1E-07 2.2E-12 105.3 15.1 144 109-286 3-152 (466)
203 COG1233 Phytoene dehydrogenase 98.8 1.3E-07 2.8E-12 104.8 16.0 57 211-283 223-279 (487)
204 KOG0405 Pyridine nucleotide-di 98.8 9.9E-09 2.2E-13 103.0 6.3 149 105-287 18-167 (478)
205 PRK12416 protoporphyrinogen ox 98.7 1.7E-06 3.6E-11 95.6 24.2 45 109-153 3-47 (463)
206 COG1053 SdhA Succinate dehydro 98.7 5.8E-08 1.2E-12 108.1 12.4 167 105-287 4-204 (562)
207 KOG2853 Possible oxidoreductas 98.7 8.5E-07 1.8E-11 89.1 18.9 41 106-148 85-125 (509)
208 COG0445 GidA Flavin-dependent 98.7 1.1E-08 2.5E-13 108.8 6.1 148 107-284 4-157 (621)
209 PRK11883 protoporphyrinogen ox 98.7 5.7E-06 1.2E-10 90.9 27.6 39 109-153 2-42 (451)
210 PLN02576 protoporphyrinogen ox 98.7 5.9E-06 1.3E-10 92.1 27.7 42 107-153 12-53 (496)
211 PF06039 Mqo: Malate:quinone o 98.7 4E-07 8.8E-12 96.2 16.4 80 206-299 175-255 (488)
212 PF07992 Pyr_redox_2: Pyridine 98.7 3.4E-08 7.3E-13 95.9 7.9 117 109-286 1-123 (201)
213 PF00070 Pyr_redox: Pyridine n 98.7 1.6E-07 3.5E-12 77.0 10.7 79 109-253 1-79 (80)
214 PRK14989 nitrite reductase sub 98.7 1.5E-07 3.2E-12 110.2 14.4 111 108-298 146-256 (847)
215 TIGR02732 zeta_caro_desat caro 98.7 4.5E-06 9.8E-11 92.2 25.4 60 214-285 221-284 (474)
216 PRK10262 thioredoxin reductase 98.7 1.2E-07 2.7E-12 99.4 12.4 114 106-286 5-118 (321)
217 PF13434 K_oxygenase: L-lysine 98.7 2E-08 4.4E-13 105.7 6.1 150 107-285 2-159 (341)
218 TIGR02352 thiamin_ThiO glycine 98.7 2E-06 4.2E-11 90.6 20.1 195 206-451 131-335 (337)
219 PRK09754 phenylpropionate diox 98.6 3.6E-07 7.7E-12 98.8 14.4 108 108-298 145-252 (396)
220 PRK07208 hypothetical protein; 98.6 4.5E-07 9.8E-12 100.6 15.1 43 105-153 2-44 (479)
221 PLN02676 polyamine oxidase 98.6 8.4E-06 1.8E-10 90.3 25.0 41 106-152 25-66 (487)
222 COG2509 Uncharacterized FAD-de 98.6 9.4E-07 2E-11 92.6 16.1 83 211-313 172-255 (486)
223 COG0029 NadB Aspartate oxidase 98.6 1.1E-07 2.4E-12 100.6 9.4 91 211-322 132-223 (518)
224 COG1251 NirB NAD(P)H-nitrite r 98.6 8.5E-08 1.9E-12 105.6 8.8 174 24-299 81-255 (793)
225 TIGR02374 nitri_red_nirB nitri 98.6 3.4E-07 7.3E-12 107.1 13.9 109 108-298 141-249 (785)
226 COG1231 Monoamine oxidase [Ami 98.6 3.3E-06 7.1E-11 89.1 19.6 43 105-153 5-47 (450)
227 PTZ00363 rab-GDP dissociation 98.6 1.1E-06 2.3E-11 95.7 16.5 60 211-285 231-290 (443)
228 PRK04965 NADH:flavorubredoxin 98.6 4.5E-07 9.8E-12 97.4 13.6 109 108-298 142-250 (377)
229 PF13454 NAD_binding_9: FAD-NA 98.6 4.6E-07 9.9E-12 84.6 11.6 146 111-283 1-155 (156)
230 PLN02487 zeta-carotene desatur 98.6 3.4E-05 7.3E-10 86.5 28.1 61 213-285 296-360 (569)
231 PRK12779 putative bifunctional 98.6 2E-07 4.3E-12 110.2 10.6 98 107-284 306-403 (944)
232 PRK09897 hypothetical protein; 98.6 3.8E-07 8.3E-12 101.1 11.8 40 108-151 2-41 (534)
233 COG1249 Lpd Pyruvate/2-oxoglut 98.5 1.2E-06 2.7E-11 94.9 14.1 113 107-298 173-285 (454)
234 TIGR01372 soxA sarcosine oxida 98.5 7E-07 1.5E-11 106.9 13.4 122 106-285 162-286 (985)
235 PRK12831 putative oxidoreducta 98.5 2.3E-07 5.1E-12 102.1 8.5 41 105-151 138-178 (464)
236 TIGR02733 desat_CrtD C-3',4' d 98.5 3.1E-06 6.7E-11 94.3 17.2 63 211-284 231-293 (492)
237 PRK09853 putative selenate red 98.5 5.4E-06 1.2E-10 97.1 19.4 35 107-146 668-703 (1019)
238 PF00732 GMC_oxred_N: GMC oxid 98.5 3.8E-07 8.2E-12 94.5 9.1 74 213-297 194-268 (296)
239 PRK09853 putative selenate red 98.5 6.4E-07 1.4E-11 104.7 10.8 39 106-150 538-576 (1019)
240 KOG0042 Glycerol-3-phosphate d 98.5 1.8E-07 3.9E-12 99.2 5.6 70 212-291 224-293 (680)
241 PLN03000 amine oxidase 98.5 4.6E-05 1E-09 87.9 25.3 41 107-153 184-224 (881)
242 KOG1336 Monodehydroascorbate/f 98.4 8E-07 1.7E-11 93.8 10.0 163 26-286 151-314 (478)
243 PRK09564 coenzyme A disulfide 98.4 1.1E-06 2.4E-11 96.5 11.6 113 109-286 2-116 (444)
244 KOG2844 Dimethylglycine dehydr 98.4 1.5E-06 3.2E-11 94.4 11.7 75 204-298 179-253 (856)
245 PRK12769 putative oxidoreducta 98.4 2.7E-06 6E-11 97.8 14.9 43 106-154 326-368 (654)
246 TIGR01316 gltA glutamate synth 98.4 1.1E-05 2.4E-10 88.7 18.9 43 106-154 132-174 (449)
247 PF13450 NAD_binding_8: NAD(P) 98.4 3.6E-07 7.8E-12 72.3 5.1 35 112-152 1-35 (68)
248 KOG2665 Predicted FAD-dependen 98.4 1.8E-06 3.9E-11 86.0 11.1 172 106-298 47-267 (453)
249 PRK05335 tRNA (uracil-5-)-meth 98.4 1.3E-06 2.8E-11 93.2 10.6 36 108-149 3-38 (436)
250 PRK05329 anaerobic glycerol-3- 98.4 7.8E-06 1.7E-10 88.3 16.7 60 212-285 259-318 (422)
251 TIGR03378 glycerol3P_GlpB glyc 98.4 5.3E-06 1.1E-10 88.7 15.2 62 210-285 261-323 (419)
252 PRK12810 gltD glutamate syntha 98.4 1.5E-05 3.3E-10 88.1 18.9 42 106-153 142-183 (471)
253 KOG2960 Protein involved in th 98.4 1.1E-06 2.4E-11 82.6 8.2 153 107-287 76-236 (328)
254 COG1232 HemY Protoporphyrinoge 98.4 7.1E-05 1.5E-09 80.7 23.0 41 109-153 2-42 (444)
255 KOG4254 Phytoene desaturase [C 98.4 8.7E-07 1.9E-11 92.3 8.0 63 211-289 263-325 (561)
256 PLN02852 ferredoxin-NADP+ redu 98.3 1.4E-06 3.1E-11 95.5 9.5 41 107-151 26-66 (491)
257 TIGR02462 pyranose_ox pyranose 98.3 7.8E-06 1.7E-10 90.7 15.3 37 108-150 1-37 (544)
258 PRK04965 NADH:flavorubredoxin 98.3 2.4E-06 5.3E-11 91.7 11.1 109 108-286 3-112 (377)
259 PRK09754 phenylpropionate diox 98.3 2.4E-06 5.3E-11 92.3 10.8 111 107-286 3-113 (396)
260 PRK06370 mercuric reductase; V 98.3 8.1E-06 1.8E-10 90.2 14.8 102 108-287 172-273 (463)
261 PRK12778 putative bifunctional 98.3 1.2E-06 2.5E-11 102.5 8.4 39 106-150 430-468 (752)
262 COG3634 AhpF Alkyl hydroperoxi 98.3 1.1E-06 2.4E-11 88.4 7.0 114 106-284 210-324 (520)
263 TIGR03377 glycerol3P_GlpA glyc 98.3 6.7E-05 1.5E-09 84.1 22.1 78 207-298 123-200 (516)
264 COG1252 Ndh NADH dehydrogenase 98.3 1.8E-06 3.8E-11 91.6 8.4 101 107-286 155-263 (405)
265 PRK11749 dihydropyrimidine deh 98.3 1.6E-06 3.5E-11 95.6 8.4 39 106-150 139-177 (457)
266 TIGR03197 MnmC_Cterm tRNA U-34 98.3 1.6E-05 3.6E-10 85.4 16.0 62 207-286 130-191 (381)
267 KOG2311 NAD/FAD-utilizing prot 98.3 1.1E-06 2.5E-11 91.8 6.5 144 106-284 27-185 (679)
268 PRK05976 dihydrolipoamide dehy 98.3 9E-06 2E-10 90.0 13.9 103 108-287 181-283 (472)
269 PRK12775 putative trifunctiona 98.3 1.2E-06 2.6E-11 104.5 7.2 38 107-150 430-467 (1006)
270 PRK13512 coenzyme A disulfide 98.3 4.6E-06 1E-10 91.4 11.2 37 109-149 3-39 (438)
271 TIGR03169 Nterm_to_SelD pyridi 98.2 3.6E-06 7.7E-11 90.0 9.8 108 109-286 1-108 (364)
272 KOG0404 Thioredoxin reductase 98.2 2.9E-06 6.2E-11 80.6 7.6 117 107-285 8-124 (322)
273 TIGR01350 lipoamide_DH dihydro 98.2 7.6E-06 1.6E-10 90.4 12.4 103 107-288 170-272 (461)
274 PRK06116 glutathione reductase 98.2 1.2E-05 2.5E-10 88.6 13.6 99 108-286 168-266 (450)
275 PRK02106 choline dehydrogenase 98.2 1.1E-05 2.3E-10 91.4 13.1 69 216-298 205-273 (560)
276 TIGR00137 gid_trmFO tRNA:m(5)U 98.2 8.7E-06 1.9E-10 87.4 11.6 36 109-150 2-37 (433)
277 TIGR01318 gltD_gamma_fam gluta 98.2 3.3E-06 7.2E-11 93.2 8.6 39 106-150 140-178 (467)
278 PRK05249 soluble pyridine nucl 98.2 1.4E-05 2.9E-10 88.4 13.0 100 107-287 175-274 (461)
279 PRK05675 sdhA succinate dehydr 98.2 2.5E-06 5.4E-11 96.4 7.0 91 211-321 125-215 (570)
280 TIGR01421 gluta_reduc_1 glutat 98.2 2.1E-05 4.5E-10 86.5 13.8 99 108-286 167-266 (450)
281 PRK06416 dihydrolipoamide dehy 98.2 1.6E-05 3.4E-10 87.9 12.9 102 108-287 173-274 (462)
282 PRK07251 pyridine nucleotide-d 98.2 1.9E-05 4.1E-10 86.6 13.1 98 108-287 158-255 (438)
283 PRK09564 coenzyme A disulfide 98.2 2.7E-05 5.8E-10 85.6 14.3 108 108-298 150-257 (444)
284 TIGR02374 nitri_red_nirB nitri 98.1 6E-06 1.3E-10 96.7 9.5 109 110-286 1-109 (785)
285 PRK12770 putative glutamate sy 98.1 5.9E-06 1.3E-10 87.9 8.6 38 107-150 18-55 (352)
286 PRK12814 putative NADPH-depend 98.1 4.3E-06 9.3E-11 96.0 7.8 39 107-151 193-231 (652)
287 PRK14989 nitrite reductase sub 98.1 1.3E-05 2.8E-10 94.1 11.6 111 108-286 4-114 (847)
288 TIGR02053 MerA mercuric reduct 98.1 2.7E-05 5.9E-10 86.0 13.7 102 108-287 167-268 (463)
289 COG3075 GlpB Anaerobic glycero 98.1 2.7E-05 5.9E-10 78.3 12.0 59 212-284 258-316 (421)
290 PRK13512 coenzyme A disulfide 98.1 3E-05 6.4E-10 85.0 13.7 104 108-298 149-252 (438)
291 COG4529 Uncharacterized protei 98.1 1.9E-05 4.2E-10 84.0 11.7 158 108-289 2-168 (474)
292 TIGR03385 CoA_CoA_reduc CoA-di 98.1 3.1E-05 6.8E-10 84.6 13.6 107 108-298 138-244 (427)
293 TIGR01424 gluta_reduc_2 glutat 98.1 3.2E-05 6.9E-10 85.0 13.2 98 108-286 167-264 (446)
294 PRK07818 dihydrolipoamide dehy 98.1 3.8E-05 8.1E-10 85.0 13.7 103 108-287 173-275 (466)
295 COG0446 HcaD Uncharacterized N 98.1 2.7E-05 5.8E-10 84.2 12.4 102 107-286 136-238 (415)
296 PRK06115 dihydrolipoamide dehy 98.1 4.1E-05 8.8E-10 84.6 13.9 105 107-287 174-278 (466)
297 COG3573 Predicted oxidoreducta 98.1 9.3E-05 2E-09 74.5 14.7 40 106-151 4-45 (552)
298 PF01593 Amino_oxidase: Flavin 98.1 0.00011 2.3E-09 79.6 16.8 62 206-284 203-264 (450)
299 PTZ00318 NADH dehydrogenase-li 98.1 1.5E-05 3.3E-10 86.9 10.1 116 107-285 10-125 (424)
300 PRK07846 mycothione reductase; 98.1 3.7E-05 8.1E-10 84.5 13.0 98 108-287 167-264 (451)
301 PLN02507 glutathione reductase 98.1 4.1E-05 8.8E-10 85.3 13.4 99 108-287 204-302 (499)
302 PRK06912 acoL dihydrolipoamide 98.1 4.7E-05 1E-09 84.0 13.8 100 108-287 171-270 (458)
303 PTZ00188 adrenodoxin reductase 98.0 1.2E-05 2.6E-10 87.1 8.5 40 107-152 39-79 (506)
304 PRK12809 putative oxidoreducta 98.0 9E-06 2E-10 93.2 7.8 38 107-150 310-347 (639)
305 TIGR01317 GOGAT_sm_gam glutama 98.0 9.9E-06 2.2E-10 89.8 7.9 38 107-150 143-180 (485)
306 PTZ00058 glutathione reductase 98.0 5.3E-05 1.2E-09 85.0 13.7 101 107-286 237-337 (561)
307 KOG0029 Amine oxidase [Seconda 98.0 5.1E-06 1.1E-10 91.5 5.4 43 105-153 13-55 (501)
308 COG3486 IucD Lysine/ornithine 98.0 2.1E-05 4.6E-10 81.6 9.5 152 105-290 3-162 (436)
309 PRK07845 flavoprotein disulfid 98.0 5E-05 1.1E-09 83.9 13.1 99 108-287 178-276 (466)
310 KOG4716 Thioredoxin reductase 98.0 5.4E-05 1.2E-09 76.3 11.6 53 105-163 17-77 (503)
311 TIGR01810 betA choline dehydro 98.0 5.8E-05 1.3E-09 84.9 13.5 71 214-298 196-266 (532)
312 TIGR01423 trypano_reduc trypan 98.0 5.7E-05 1.2E-09 83.7 13.1 103 108-287 188-290 (486)
313 PRK14694 putative mercuric red 98.0 6.9E-05 1.5E-09 82.9 13.7 97 108-287 179-275 (468)
314 PLN02546 glutathione reductase 98.0 8.9E-05 1.9E-09 83.3 14.5 100 108-287 253-352 (558)
315 PRK14727 putative mercuric red 98.0 8.2E-05 1.8E-09 82.5 14.1 97 108-287 189-285 (479)
316 COG2907 Predicted NAD/FAD-bind 98.0 5E-05 1.1E-09 77.1 10.7 39 107-152 8-46 (447)
317 PLN02785 Protein HOTHEAD 98.0 0.0001 2.2E-09 83.3 14.4 68 218-298 226-301 (587)
318 PRK06327 dihydrolipoamide dehy 97.9 7.2E-05 1.6E-09 82.9 12.8 103 108-287 184-286 (475)
319 PRK08010 pyridine nucleotide-d 97.9 9.4E-05 2E-09 81.2 13.3 98 108-287 159-256 (441)
320 TIGR03140 AhpF alkyl hydropero 97.9 8.6E-05 1.9E-09 83.1 12.9 98 108-286 353-451 (515)
321 PRK06467 dihydrolipoamide dehy 97.9 0.00011 2.4E-09 81.3 13.6 103 108-288 175-277 (471)
322 PRK06567 putative bifunctional 97.9 2.2E-05 4.8E-10 91.0 7.7 38 106-149 382-419 (1028)
323 COG0493 GltD NADPH-dependent g 97.9 1.6E-05 3.5E-10 86.4 6.3 40 108-153 124-163 (457)
324 PTZ00153 lipoamide dehydrogena 97.9 0.00016 3.5E-09 82.5 14.5 115 108-286 313-428 (659)
325 PRK13984 putative oxidoreducta 97.9 2.5E-05 5.4E-10 89.3 8.0 39 106-150 282-320 (604)
326 PLN02268 probable polyamine ox 97.9 1.3E-05 2.8E-10 87.8 5.3 39 109-153 2-40 (435)
327 TIGR00031 UDP-GALP_mutase UDP- 97.9 1.4E-05 3E-10 85.0 5.3 39 108-152 2-40 (377)
328 PTZ00318 NADH dehydrogenase-li 97.9 9.4E-05 2E-09 80.7 11.9 99 108-285 174-280 (424)
329 PRK13748 putative mercuric red 97.9 0.00014 3E-09 82.4 13.4 97 108-287 271-367 (561)
330 PRK06292 dihydrolipoamide dehy 97.8 0.00025 5.5E-09 78.3 14.2 103 107-288 169-271 (460)
331 TIGR03452 mycothione_red mycot 97.8 0.00019 4.1E-09 79.0 12.9 97 108-286 170-266 (452)
332 PRK10262 thioredoxin reductase 97.8 0.0002 4.4E-09 75.0 12.6 104 107-286 146-249 (321)
333 PRK15317 alkyl hydroperoxide r 97.8 0.00017 3.8E-09 80.7 12.7 98 108-286 352-450 (517)
334 TIGR01292 TRX_reduct thioredox 97.8 0.00022 4.9E-09 73.5 12.7 97 108-286 142-239 (300)
335 KOG3923 D-aspartate oxidase [A 97.8 0.00042 9.2E-09 69.1 13.5 41 107-147 3-44 (342)
336 COG1252 Ndh NADH dehydrogenase 97.8 7.6E-05 1.6E-09 79.4 9.0 109 107-286 3-112 (405)
337 PRK12831 putative oxidoreducta 97.8 0.00019 4.1E-09 79.2 12.5 112 107-286 281-397 (464)
338 PTZ00052 thioredoxin reductase 97.8 0.00024 5.3E-09 79.1 13.2 97 108-286 183-279 (499)
339 PLN02568 polyamine oxidase 97.7 3.4E-05 7.3E-10 86.4 5.6 47 105-152 3-49 (539)
340 TIGR01438 TGR thioredoxin and 97.7 0.00032 6.9E-09 77.8 13.0 101 108-287 181-281 (484)
341 COG0562 Glf UDP-galactopyranos 97.7 4.1E-05 9E-10 77.0 5.1 40 108-153 2-41 (374)
342 COG3349 Uncharacterized conser 97.7 3.7E-05 8E-10 82.7 4.8 40 109-154 2-41 (485)
343 COG1148 HdrA Heterodisulfide r 97.6 6.6E-05 1.4E-09 79.2 4.9 40 106-151 123-162 (622)
344 TIGR03169 Nterm_to_SelD pyridi 97.6 0.00061 1.3E-08 72.7 12.0 98 108-285 146-243 (364)
345 KOG0399 Glutamate synthase [Am 97.5 0.00024 5.2E-09 81.2 7.4 39 107-151 1785-1823(2142)
346 KOG1276 Protoporphyrinogen oxi 97.4 0.00017 3.8E-09 75.2 5.3 45 106-154 10-54 (491)
347 PRK12770 putative glutamate sy 97.4 0.00099 2.1E-08 70.9 11.3 108 108-285 173-286 (352)
348 PRK11749 dihydropyrimidine deh 97.4 0.0011 2.5E-08 73.0 12.1 110 107-285 273-387 (457)
349 PLN02529 lysine-specific histo 97.4 0.00017 3.8E-09 82.7 5.6 41 106-152 159-199 (738)
350 PRK12778 putative bifunctional 97.4 0.0012 2.6E-08 77.5 12.6 110 108-285 571-686 (752)
351 PLN02328 lysine-specific histo 97.3 0.00021 4.6E-09 82.5 5.4 40 107-152 238-277 (808)
352 TIGR01318 gltD_gamma_fam gluta 97.3 0.002 4.3E-08 71.3 12.6 111 107-285 282-398 (467)
353 TIGR01816 sdhA_forward succina 97.3 0.00075 1.6E-08 76.3 8.7 90 211-321 118-207 (565)
354 PF00996 GDI: GDP dissociation 97.2 0.0093 2E-07 64.5 16.3 60 206-281 223-285 (438)
355 KOG0685 Flavin-containing amin 97.2 0.00042 9E-09 73.6 5.5 42 107-153 21-62 (498)
356 KOG1800 Ferredoxin/adrenodoxin 97.2 0.0011 2.4E-08 68.2 7.9 40 108-151 21-60 (468)
357 TIGR03143 AhpF_homolog putativ 97.1 0.0038 8.1E-08 70.6 12.4 35 107-147 143-177 (555)
358 TIGR03862 flavo_PP4765 unchara 97.1 0.01 2.2E-07 63.2 14.1 80 210-308 84-170 (376)
359 PRK12809 putative oxidoreducta 97.0 0.005 1.1E-07 70.8 12.6 111 107-285 451-567 (639)
360 COG2303 BetA Choline dehydroge 97.0 0.00062 1.3E-08 76.5 4.4 37 104-146 4-40 (542)
361 PRK12814 putative NADPH-depend 97.0 0.0058 1.3E-07 70.4 12.5 110 107-285 323-437 (652)
362 PF13434 K_oxygenase: L-lysine 97.0 0.0088 1.9E-07 63.1 12.8 143 106-283 189-339 (341)
363 TIGR01372 soxA sarcosine oxida 97.0 0.0074 1.6E-07 72.8 13.5 104 108-298 318-422 (985)
364 PF06100 Strep_67kDa_ant: Stre 97.0 0.021 4.6E-07 61.8 15.4 43 108-152 3-45 (500)
365 PRK12775 putative trifunctiona 96.9 0.0075 1.6E-07 72.5 12.9 112 107-286 571-687 (1006)
366 PRK12779 putative bifunctional 96.9 0.0077 1.7E-07 71.9 12.8 111 108-286 448-563 (944)
367 PLN02976 amine oxidase 96.9 0.0011 2.3E-08 79.7 5.4 41 106-152 692-732 (1713)
368 PF00037 Fer4: 4Fe-4S binding 96.8 0.00052 1.1E-08 42.1 1.1 24 593-616 1-24 (24)
369 KOG1346 Programmed cell death 96.8 0.0049 1.1E-07 64.2 8.7 114 107-299 347-461 (659)
370 PF13247 Fer4_11: 4Fe-4S diclu 96.8 0.00051 1.1E-08 58.2 1.3 54 567-622 6-64 (98)
371 KOG3851 Sulfide:quinone oxidor 96.7 0.0047 1E-07 62.3 7.2 38 105-146 37-74 (446)
372 TIGR01317 GOGAT_sm_gam glutama 96.7 0.011 2.4E-07 65.6 11.0 124 108-284 284-413 (485)
373 KOG2495 NADH-dehydrogenase (ub 96.6 0.013 2.9E-07 61.5 10.3 103 108-285 219-329 (491)
374 PRK13984 putative oxidoreducta 96.5 0.022 4.7E-07 65.3 12.2 63 223-286 473-539 (604)
375 COG0492 TrxB Thioredoxin reduc 96.4 0.027 5.8E-07 58.4 11.3 96 107-286 143-239 (305)
376 COG1143 NuoI Formate hydrogenl 96.3 0.0018 4E-08 60.6 1.9 51 566-616 53-113 (172)
377 PF14697 Fer4_21: 4Fe-4S diclu 96.3 0.0018 3.8E-08 49.5 1.5 49 566-616 4-58 (59)
378 KOG1336 Monodehydroascorbate/f 96.3 0.017 3.6E-07 61.8 9.2 44 222-284 137-180 (478)
379 KOG1238 Glucose dehydrogenase/ 96.3 0.0034 7.4E-08 69.4 4.2 39 105-148 55-93 (623)
380 COG1146 Ferredoxin [Energy pro 96.3 0.0043 9.3E-08 49.0 3.4 55 566-620 6-63 (68)
381 TIGR01582 FDH-beta formate deh 96.2 0.0047 1E-07 62.9 4.3 60 559-620 81-146 (283)
382 COG1206 Gid NAD(FAD)-utilizing 96.1 0.019 4.2E-07 58.3 8.0 38 107-150 3-40 (439)
383 PF12837 Fer4_6: 4Fe-4S bindin 96.1 0.0011 2.5E-08 40.5 -0.5 23 593-615 2-24 (24)
384 PF12797 Fer4_2: 4Fe-4S bindin 96.0 0.0023 5E-08 37.8 0.6 19 593-611 3-21 (22)
385 PF13237 Fer4_10: 4Fe-4S diclu 96.0 0.0018 3.8E-08 48.1 -0.1 46 565-611 4-52 (52)
386 KOG2755 Oxidoreductase [Genera 95.9 0.0079 1.7E-07 59.2 3.8 35 110-148 2-36 (334)
387 PRK01438 murD UDP-N-acetylmura 95.8 0.025 5.5E-07 62.8 8.2 33 108-146 17-49 (480)
388 TIGR02060 aprB adenosine phosp 95.6 0.0071 1.5E-07 54.3 2.3 53 566-618 6-65 (132)
389 PRK08348 NADH-plastoquinone ox 95.6 0.01 2.2E-07 52.6 3.0 57 561-619 36-94 (120)
390 KOG1346 Programmed cell death 95.5 0.052 1.1E-06 56.8 8.2 67 205-296 255-321 (659)
391 COG0446 HcaD Uncharacterized N 95.5 0.058 1.2E-06 58.1 9.3 45 223-287 64-108 (415)
392 COG3634 AhpF Alkyl hydroperoxi 95.4 0.079 1.7E-06 54.3 9.1 76 107-253 354-430 (520)
393 COG1142 HycB Fe-S-cluster-cont 95.4 0.01 2.2E-07 55.0 2.6 49 567-618 50-102 (165)
394 TIGR03467 HpnE squalene-associ 95.4 1.5 3.4E-05 47.2 20.3 54 215-284 200-253 (419)
395 PF12800 Fer4_4: 4Fe-4S bindin 95.4 0.0085 1.8E-07 33.4 1.3 17 597-613 1-17 (17)
396 PRK06567 putative bifunctional 95.3 0.074 1.6E-06 62.6 9.8 66 220-285 648-728 (1028)
397 PLN02172 flavin-containing mon 95.1 0.041 8.8E-07 60.7 6.8 34 107-146 204-237 (461)
398 CHL00065 psaC photosystem I su 95.1 0.0062 1.3E-07 49.9 0.1 58 565-622 6-70 (81)
399 TIGR03478 DMSO_red_II_bet DMSO 95.0 0.027 5.9E-07 57.5 4.6 53 566-620 127-184 (321)
400 PLN02852 ferredoxin-NADP+ redu 94.9 0.38 8.3E-06 53.2 13.4 73 213-285 267-354 (491)
401 KOG0405 Pyridine nucleotide-di 94.8 0.14 3E-06 52.7 8.8 104 104-287 186-289 (478)
402 PRK09624 porD pyuvate ferredox 94.8 0.016 3.4E-07 50.0 1.8 51 566-618 49-101 (105)
403 COG1144 Pyruvate:ferredoxin ox 94.5 0.025 5.4E-07 46.2 2.1 54 564-618 31-86 (91)
404 TIGR02163 napH_ ferredoxin-typ 94.5 0.026 5.5E-07 57.1 2.7 58 561-618 194-254 (255)
405 PRK09623 vorD 2-ketoisovalerat 94.3 0.043 9.4E-07 47.3 3.4 52 565-618 48-101 (105)
406 COG1251 NirB NAD(P)H-nitrite r 94.1 0.32 6.9E-06 55.0 10.4 113 107-287 3-115 (793)
407 PRK14993 tetrathionate reducta 94.0 0.029 6.3E-07 56.2 1.9 52 566-619 96-151 (244)
408 TIGR02179 PorD_KorD 2-oxoacid: 93.9 0.062 1.3E-06 43.5 3.5 50 566-617 23-74 (78)
409 PRK09625 porD pyruvate flavodo 93.8 0.03 6.6E-07 50.5 1.5 51 566-618 57-109 (133)
410 TIGR01660 narH nitrate reducta 93.7 0.072 1.6E-06 56.9 4.4 53 565-619 178-235 (492)
411 TIGR00403 ndhI NADH-plastoquin 93.7 0.041 8.8E-07 52.6 2.4 53 566-618 60-122 (183)
412 KOG4716 Thioredoxin reductase 93.7 0.14 2.9E-06 52.5 6.0 111 107-298 198-308 (503)
413 PRK09626 oorD 2-oxoglutarate-a 93.7 0.057 1.2E-06 46.4 3.0 59 561-619 9-74 (103)
414 COG1245 Predicted ATPase, RNas 93.6 0.044 9.4E-07 58.3 2.5 60 560-621 3-74 (591)
415 TIGR01944 rnfB electron transp 93.6 0.055 1.2E-06 50.8 2.9 55 562-618 107-163 (165)
416 TIGR03149 cyt_nit_nrfC cytochr 93.6 0.056 1.2E-06 53.5 3.1 51 566-618 90-145 (225)
417 COG0437 HybA Fe-S-cluster-cont 93.5 0.073 1.6E-06 51.1 3.7 51 567-619 66-121 (203)
418 PRK08222 hydrogenase 4 subunit 93.5 0.039 8.4E-07 52.6 1.8 53 566-618 36-93 (181)
419 TIGR00402 napF ferredoxin-type 93.5 0.048 1E-06 46.7 2.2 49 568-616 34-84 (101)
420 TIGR02936 fdxN_nitrog ferredox 93.5 0.043 9.4E-07 45.8 1.9 53 565-617 18-89 (91)
421 PF00743 FMO-like: Flavin-bind 93.4 0.21 4.6E-06 56.0 7.7 34 107-146 183-216 (531)
422 TIGR03385 CoA_CoA_reduc CoA-di 93.3 0.28 6.1E-06 53.5 8.5 39 413-451 260-303 (427)
423 PRK08318 dihydropyrimidine deh 93.2 0.065 1.4E-06 58.4 3.2 57 566-622 340-402 (420)
424 TIGR03048 PS_I_psaC photosyste 93.2 0.041 8.8E-07 44.9 1.2 62 561-623 2-70 (80)
425 TIGR01971 NuoI NADH-quinone ox 93.1 0.062 1.3E-06 47.7 2.3 52 567-618 42-102 (122)
426 PRK12387 formate hydrogenlyase 92.8 0.078 1.7E-06 50.6 2.8 56 562-618 33-93 (180)
427 COG4231 Indolepyruvate ferredo 92.8 0.052 1.1E-06 59.9 1.7 53 562-616 572-626 (640)
428 TIGR03224 benzo_boxA benzoyl-C 92.8 0.068 1.5E-06 58.0 2.6 59 566-628 8-68 (411)
429 TIGR02951 DMSO_dmsB DMSO reduc 92.6 0.092 2E-06 49.1 2.8 53 567-621 61-118 (161)
430 KOG3256 NADH:ubiquinone oxidor 92.5 0.04 8.7E-07 49.9 0.4 50 567-616 110-168 (212)
431 TIGR03287 methan_mark_16 putat 92.2 0.11 2.3E-06 55.0 3.1 50 566-621 300-353 (391)
432 KOG0404 Thioredoxin reductase 92.1 0.62 1.4E-05 45.1 7.8 98 108-286 158-256 (322)
433 PRK09477 napH quinol dehydroge 91.9 0.1 2.3E-06 53.2 2.5 58 561-618 201-262 (271)
434 PRK14028 pyruvate ferredoxin o 91.9 0.079 1.7E-06 55.3 1.6 54 565-618 244-309 (312)
435 PF01210 NAD_Gly3P_dh_N: NAD-d 91.8 0.2 4.3E-06 46.6 4.2 32 109-146 1-32 (157)
436 PRK05888 NADH dehydrogenase su 91.8 0.23 5E-06 46.6 4.6 52 566-617 56-116 (164)
437 COG0569 TrkA K+ transport syst 91.8 0.23 5E-06 49.2 4.8 51 109-165 2-61 (225)
438 PRK06273 ferredoxin; Provision 91.5 0.072 1.6E-06 49.8 0.8 52 566-617 47-110 (165)
439 PLN00071 photosystem I subunit 91.5 0.075 1.6E-06 43.4 0.8 58 566-623 7-71 (81)
440 PRK09898 hypothetical protein; 91.5 0.31 6.6E-06 47.7 5.2 52 566-618 119-174 (208)
441 PRK02705 murD UDP-N-acetylmura 91.4 0.21 4.5E-06 55.2 4.4 34 109-148 2-35 (459)
442 PF02737 3HCDH_N: 3-hydroxyacy 91.1 0.26 5.6E-06 47.0 4.2 33 109-147 1-33 (180)
443 PF13187 Fer4_9: 4Fe-4S diclus 91.0 0.045 9.7E-07 40.9 -0.9 20 596-615 36-55 (55)
444 PRK10882 hydrogenase 2 protein 90.9 0.1 2.2E-06 54.5 1.2 51 567-619 109-164 (328)
445 KOG2495 NADH-dehydrogenase (ub 90.8 1.5 3.4E-05 46.6 9.7 38 104-147 52-89 (491)
446 PRK02651 photosystem I subunit 90.7 0.12 2.7E-06 42.1 1.3 59 560-619 2-67 (81)
447 PF12838 Fer4_7: 4Fe-4S diclus 90.7 0.018 3.8E-07 42.7 -3.4 37 577-613 9-51 (52)
448 PF01262 AlaDh_PNT_C: Alanine 90.6 0.39 8.4E-06 45.2 4.8 34 107-146 20-53 (168)
449 TIGR02494 PFLE_PFLC glycyl-rad 90.4 0.12 2.6E-06 53.4 1.3 55 564-618 44-102 (295)
450 PF02254 TrkA_N: TrkA-N domain 90.4 0.56 1.2E-05 40.8 5.4 49 110-164 1-56 (116)
451 PF02558 ApbA: Ketopantoate re 90.4 0.42 9.2E-06 43.8 4.8 31 110-146 1-31 (151)
452 PF03721 UDPG_MGDP_dh_N: UDP-g 90.3 0.3 6.6E-06 46.7 3.9 33 109-147 2-34 (185)
453 PLN02976 amine oxidase 90.2 5 0.00011 49.6 14.4 39 414-455 1150-1188(1713)
454 PF13241 NAD_binding_7: Putati 90.0 0.31 6.7E-06 41.8 3.3 34 107-146 7-40 (103)
455 PRK05113 electron transport co 89.9 0.18 3.9E-06 48.5 2.0 55 562-618 108-164 (191)
456 PRK09424 pntA NAD(P) transhydr 89.8 0.34 7.4E-06 53.6 4.3 35 107-147 165-199 (509)
457 PRK06991 ferredoxin; Provision 89.8 0.18 3.9E-06 51.1 1.9 52 565-618 82-135 (270)
458 TIGR02066 dsrB sulfite reducta 89.7 0.17 3.7E-06 53.2 1.8 47 577-623 190-245 (341)
459 KOG4405 GDP dissociation inhib 89.6 0.34 7.3E-06 50.9 3.7 42 106-153 7-48 (547)
460 PRK08764 ferredoxin; Provision 89.5 0.27 5.8E-06 44.5 2.7 56 561-618 78-135 (135)
461 TIGR03336 IOR_alpha indolepyru 89.3 0.2 4.4E-06 57.1 2.1 51 560-615 543-595 (595)
462 TIGR01470 cysG_Nterm siroheme 89.2 0.51 1.1E-05 46.0 4.6 32 108-145 10-41 (205)
463 PRK10330 formate dehydrogenase 89.2 0.29 6.4E-06 46.6 2.9 49 567-618 55-107 (181)
464 PRK07118 ferredoxin; Validated 89.2 0.28 6.1E-06 50.2 2.8 53 567-622 212-266 (280)
465 PLN02568 polyamine oxidase 89.2 9.8 0.00021 42.9 15.3 53 212-283 242-294 (539)
466 TIGR00518 alaDH alanine dehydr 89.1 0.44 9.6E-06 50.9 4.4 34 107-146 167-200 (370)
467 TIGR02512 Fe_only_hydrog hydro 89.1 0.15 3.2E-06 54.7 0.8 53 566-618 5-70 (374)
468 KOG2403 Succinate dehydrogenas 89.1 0.94 2E-05 49.5 6.7 41 107-153 55-95 (642)
469 TIGR02912 sulfite_red_C sulfit 89.1 0.16 3.5E-06 53.0 1.0 48 566-616 167-219 (314)
470 PF13738 Pyr_redox_3: Pyridine 89.1 0.48 1E-05 45.6 4.3 34 107-146 167-200 (203)
471 PRK13409 putative ATPase RIL; 88.8 0.24 5.2E-06 56.3 2.3 60 561-621 3-73 (590)
472 PF13478 XdhC_C: XdhC Rossmann 88.8 0.49 1.1E-05 42.8 3.8 32 110-147 1-32 (136)
473 PRK12769 putative oxidoreducta 88.6 0.37 8.1E-06 55.7 3.7 51 566-619 52-106 (654)
474 PF14697 Fer4_21: 4Fe-4S diclu 88.6 0.36 7.9E-06 36.8 2.4 23 594-616 2-24 (59)
475 TIGR02700 flavo_MJ0208 archaeo 88.6 0.2 4.4E-06 49.9 1.3 48 566-616 146-195 (234)
476 PRK14106 murD UDP-N-acetylmura 88.5 0.57 1.2E-05 51.5 4.9 34 107-146 5-38 (450)
477 PRK06129 3-hydroxyacyl-CoA deh 88.3 0.52 1.1E-05 49.1 4.2 33 109-147 4-36 (308)
478 COG0686 Ald Alanine dehydrogen 88.3 0.41 8.9E-06 48.7 3.2 35 106-146 167-201 (371)
479 TIGR01316 gltA glutamate synth 88.1 0.63 1.4E-05 51.2 4.9 110 108-285 273-387 (449)
480 COG3486 IucD Lysine/ornithine 88.0 6.8 0.00015 41.7 11.9 63 214-287 277-342 (436)
481 COG4656 RnfC Predicted NADH:ub 87.9 0.058 1.3E-06 58.3 -3.2 45 569-613 366-419 (529)
482 PRK06719 precorrin-2 dehydroge 87.9 0.74 1.6E-05 42.8 4.5 31 107-143 13-43 (157)
483 COG1145 NapF Ferredoxin [Energ 87.7 0.38 8.2E-06 40.5 2.3 57 565-621 26-86 (99)
484 COG1149 MinD superfamily P-loo 87.6 0.32 7E-06 48.6 2.0 52 566-619 67-120 (284)
485 cd00401 AdoHcyase S-adenosyl-L 87.5 0.69 1.5E-05 49.9 4.6 34 107-146 202-235 (413)
486 PRK13795 hypothetical protein; 87.4 0.25 5.4E-06 56.7 1.2 53 563-616 576-630 (636)
487 PF12798 Fer4_3: 4Fe-4S bindin 87.1 0.18 3.9E-06 27.1 -0.1 14 600-613 1-14 (15)
488 PRK06249 2-dehydropantoate 2-r 87.1 0.92 2E-05 47.3 5.2 33 108-146 6-38 (313)
489 TIGR02176 pyruv_ox_red pyruvat 87.1 0.4 8.7E-06 58.7 2.8 55 564-618 679-761 (1165)
490 PRK05708 2-dehydropantoate 2-r 87.0 0.81 1.8E-05 47.5 4.7 33 108-146 3-35 (305)
491 CHL00014 ndhI NADH dehydrogena 86.9 0.27 5.9E-06 46.2 1.0 52 566-617 57-118 (167)
492 PF13237 Fer4_10: 4Fe-4S diclu 86.5 0.35 7.5E-06 35.6 1.2 21 592-612 1-21 (52)
493 PLN02328 lysine-specific histo 86.5 8.1 0.00018 45.4 12.9 38 415-455 644-681 (808)
494 PRK06718 precorrin-2 dehydroge 86.5 0.94 2E-05 44.0 4.5 32 107-144 10-41 (202)
495 COG1004 Ugd Predicted UDP-gluc 86.1 0.87 1.9E-05 48.1 4.3 33 109-147 2-34 (414)
496 PRK08293 3-hydroxybutyryl-CoA 86.0 0.91 2E-05 46.7 4.4 32 109-146 5-36 (287)
497 PF01488 Shikimate_DH: Shikima 86.0 1.3 2.8E-05 39.9 4.9 34 107-146 12-46 (135)
498 PRK07530 3-hydroxybutyryl-CoA 85.8 1 2.2E-05 46.5 4.7 33 108-146 5-37 (292)
499 PRK09623 vorD 2-ketoisovalerat 85.7 0.5 1.1E-05 40.7 2.0 64 551-618 6-71 (105)
500 PRK07569 bidirectional hydroge 85.7 0.41 8.9E-06 47.7 1.6 58 560-618 139-210 (234)
No 1
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=8e-134 Score=1003.20 Aligned_cols=530 Identities=65% Similarity=1.114 Sum_probs=510.6
Q ss_pred cccccCccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeee
Q 006778 100 EMCRESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV 179 (631)
Q Consensus 100 ~~~~~~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~ 179 (631)
.++|+..++||+|||||||||+||++|+|++++.+..++|+|+||+.++|+|++||+++++.+++||+|+|++...|+.+
T Consensus 69 ~~~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t 148 (621)
T KOG2415|consen 69 NMERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNT 148 (621)
T ss_pred cchhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccc
Confidence 36778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcceEeeccCCcccCCC--CCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccc
Q 006778 180 PVSSDKFWFLTKDRAFSLPS--PFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (631)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~p~--~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~ 257 (631)
.++.+.++|++....+.+|. +|.|+|+|+++.+++.+||.++||+.||+|+++.++.++++++||.|.||.|+|+|+.
T Consensus 149 ~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~ 228 (621)
T KOG2415|consen 149 PVTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGIS 228 (621)
T ss_pred cccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccccc
Confidence 99999999999888877765 7999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCC
Q 006778 258 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLD 337 (631)
Q Consensus 258 ~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~ 337 (631)
+||.+|++|++|++++|+.+|+|+|+++++.++++++|+++ ....+|+||+|+||+|++++..+.+|.+.|++|||++
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr--~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~ 306 (621)
T KOG2415|consen 229 KDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLR--ENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLD 306 (621)
T ss_pred CCCCccccccccceecceeEEEeccccchhHHHHHHHhCcc--cCCCcceeccccceeEecChhhcCCcceeeeccCccc
Confidence 99999999999999999999999999999999999999999 4889999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeCCCeEEEEEEEcCCCCCCCCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcccCCCE
Q 006778 338 QKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (631)
Q Consensus 338 ~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v 417 (631)
..+|||+|+|+++|+.+.+|+++.+||.||+++|+++||+||+||.+++.|++++++.|++|++++||+|++|++.+|+.
T Consensus 307 ~~tYGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~FPGG 386 (621)
T KOG2415|consen 307 NDTYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVFPGG 386 (621)
T ss_pred CCccCceeEEEcCCCeEEEEEEEEecCCCCCCCHHHHHHHhhcCcchhhhhcCcceeeehhhhhccCCcccCcccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCCC-------chHHHHHHHHHHhHHHHHHHHHhccchhhh--hc
Q 006778 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED-------SNMEIYWDTLQKSWVWQELQRARNYRPAFE--YG 488 (631)
Q Consensus 418 ~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~~-------~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~--~g 488 (631)
+|||++||+||....+|+|+||+||++|||+|++++... -.+..|++.++++|++|||+..||+|+.|+ .|
T Consensus 387 ~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNirPsf~~~lG 466 (621)
T KOG2415|consen 387 ALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSFHGKLG 466 (621)
T ss_pred eEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHhhccCcccccccc
Confidence 999999999999999999999999999999999988542 225699999999999999999999999997 89
Q ss_pred chHHHHHHHHHHHHhcCCCCccccCCCCCcccchhhhcCCCCCCCCCCCCccccccccccccCCccCCCCCCceEecCCC
Q 006778 489 LLPGLAICGLEHYILRGKSPYTLKHGKPDHEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPK 568 (631)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 568 (631)
.|.||++.++..++++|+.||||+|.+.|++.+.|+++++||+||||||+||||.+|||++++|||++||||||+++|++
T Consensus 467 ~ygGmiySgi~~~~lkG~~PwTLkh~~~D~e~l~pa~k~~pI~YPKPDg~lSFDlltSvs~sgTnH~~dqP~HL~l~~~~ 546 (621)
T KOG2415|consen 467 LYGGMIYSGIFSYVLKGKVPWTLKHGKNDHEALKPASKYKPIVYPKPDGVLSFDLLTSVSRSGTNHDEDQPAHLTLRDDD 546 (621)
T ss_pred cccchhhhhhHHHhhcCccceeeccCCCchhhccchhhCCCcccCCCCceEEEeecchhhccCCCCCCCCCceeeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCccc------cce----EEEcCCCC--eEEEEecCCccccccccccCCCCCcceeCCCCCCCCCCCCC
Q 006778 569 IPELVNLPEYA------GPE----YVPDEKNQ--LKLQINAQNCLHCKACDIKDPKQNIKWTVPEGGGGPGYSVM 631 (631)
Q Consensus 569 ~~~~~~~~~~~------~p~----~~~~~~~~--~~~~~~~~~c~~c~tC~i~~p~~~i~w~~p~gg~g~~y~~~ 631 (631)
++.+.++.+|. ||| |+.+|.+. .+||||+||||||||||||||.|||+|++||||+||.|+.|
T Consensus 547 ip~~~nf~~y~gpE~rfCPAgVYEyV~dE~~~~~krlqINaQNCiHCKtCDIKdP~QnI~W~vPeGGgGP~Y~~m 621 (621)
T KOG2415|consen 547 IPVKVNFPVYKGPESRFCPAGVYEYVPDEAGPVGKRLQINAQNCIHCKTCDIKDPKQNINWVVPEGGGGPKYTLM 621 (621)
T ss_pred cchhcCcccccChhhccCCccceeecccccCCCcceEEEccccceecccccccCcccCceeeCcCCCCCCCcccC
Confidence 99999998775 666 66677654 49999999999999999999999999999999999999998
No 2
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=1.1e-42 Score=374.70 Aligned_cols=390 Identities=36% Similarity=0.570 Sum_probs=308.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (631)
++|||+||||||||++||+.|++. |++|+|+||+..+|.+..+|+.+.+..+.++.+.+... +...+....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~------G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~---i~~~v~~~~ 72 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA------GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE---IERKVTGAR 72 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc------CCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh---hheeeeeeE
Confidence 579999999999999999999999 99999999999999999999999999999998888753 334444555
Q ss_pred eEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccc
Q 006778 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (631)
Q Consensus 186 ~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (631)
+++......+..+. ..+|+++|..+.+||.++|++.|++++.++++.++..++++.+.++...
T Consensus 73 ~~~~~~~~~~~~~~----~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~------------- 135 (396)
T COG0644 73 IYFPGEKVAIEVPV----GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAG------------- 135 (396)
T ss_pred EEecCCceEEecCC----CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcC-------------
Confidence 54442222222221 3489999999999999999999999999999999999987766555443
Q ss_pred ccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEE
Q 006778 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSF 345 (631)
Q Consensus 266 f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~~~~G~~~ 345 (631)
+.+++||+||+|||++|.+++.+ ++. ...++.++.++++.+.++ ..+...+.+.++......|++|
T Consensus 136 ---~~e~~a~~vI~AdG~~s~l~~~l----g~~---~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~~~~~~~Gy~w 201 (396)
T COG0644 136 ---DDEVRAKVVIDADGVNSALARKL----GLK---DRKPEDYAIGVKEVIEVP----DDGDVEEFLYGPLDVGPGGYGW 201 (396)
T ss_pred ---CEEEEcCEEEECCCcchHHHHHh----CCC---CCChhheeEEeEEEEecC----CCCceEEEEecCCccCCCceEE
Confidence 37999999999999999988865 444 345778999999999887 4456777777777777778999
Q ss_pred EEEeCCCeEEEEEEEcCCCCCCCCCcH-HHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcccCCCEEEEccCC
Q 006778 346 LYHMNDRQIALGLVVALNYHNPFLNPY-EEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAA 424 (631)
Q Consensus 346 ~~~~~~~~~~ig~~~~~d~~~~~~~~~-~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~LiGDAA 424 (631)
+||..++.++||++...+. +...+. +.+++|+.||.+...+.+++.+++.++.+|.+++.+.| +..+|+++|||||
T Consensus 202 ifP~~~~~~~VG~g~~~~~--~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~-~~~~~~~lvGDAA 278 (396)
T COG0644 202 IFPLGDGHANVGIGVLLDD--PSLSPFLELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRP-LVGDGVLLVGDAA 278 (396)
T ss_pred EEECCCceEEEEEEEecCC--cCCCchHHHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCc-cccCCEEEEeccc
Confidence 9999999999999988766 445555 88899999999999888889999999999999999887 8999999999999
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHhcccCC-CchHHHHHHHHHHhHHHHHHHHHhccchhhhhcchHHHHHHHHHHHHh
Q 006778 425 GFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFEYGLLPGLAICGLEHYIL 503 (631)
Q Consensus 425 ~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~-~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~~g~~~~~~~~~~~~~~~ 503 (631)
++++|++|.|++.||.+|++||++|.+++.. .+.|..|++.+++++..+.+...+..+.+++ ++...+...+..+..
T Consensus 279 g~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 356 (396)
T COG0644 279 GFVNPLTGEGIRYAIKSGKLAAEAIAEALEGGEEALAEYERLLRKSLAREDLKSLRLLKLLLR--LLDRTLPALIKLLAD 356 (396)
T ss_pred cCCCCcccCcHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhhhhhHHh--HhhhhHHHHHHHHhc
Confidence 9999999999999999999999999998754 3578899999999988888877777777665 223333333332221
Q ss_pred cCCCCccccCCCCCcccchhhhcCCCCCCCCCCCCcc-ccccccccccCC
Q 006778 504 RGKSPYTLKHGKPDHEATDAARLHSPIEYPKPDGVLS-FDVPTSLHRSNT 552 (631)
Q Consensus 504 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~ 552 (631)
.+...+........+.++.+.+.++ ++.+.++.++.+
T Consensus 357 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 394 (396)
T COG0644 357 ------------KDLLGLIKKYLRKLILYPLLKGVLARFDLLKSVKRSLT 394 (396)
T ss_pred ------------cccccccchhhhhhhHHHhhhccccHHHHHHHHHHHHh
Confidence 1111222233455566776766555 677766665544
No 3
>PRK10015 oxidoreductase; Provisional
Probab=100.00 E-value=8.5e-41 Score=362.49 Aligned_cols=369 Identities=28% Similarity=0.492 Sum_probs=296.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
+||||||||||||++||+.|++. |++|+||||.+.+|....+|+.+....+.++++.+.. ..++...+..+.+
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~------G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~-~~~i~~~~~~~~~ 77 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARA------GLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAA-SAPVERKVTREKI 77 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCCCcccccCceeecccHHHHcccccc-cCCccccccceeE
Confidence 59999999999999999999999 9999999999988877677888877777777665432 2344445555556
Q ss_pred EeeccCCcccCC--CC---CCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCC
Q 006778 187 WFLTKDRAFSLP--SP---FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (631)
Q Consensus 187 ~~l~~~~~~~~p--~~---~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~ 261 (631)
+++..+....++ .. ......|.+.|..|.++|.+++++.|++++.+++|+++..++ +.+.+|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~v~~~--------- 147 (429)
T PRK10015 78 SFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG-NKVTGVQAG--------- 147 (429)
T ss_pred EEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CEEEEEEeC---------
Confidence 665543322221 11 112347899999999999999999999999999999988765 566666654
Q ss_pred ccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCC--------CCCcEEEEec
Q 006778 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKH--------NPGEILHTLG 333 (631)
Q Consensus 262 ~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~g~~~h~~~ 333 (631)
+.+++||+||+|+|.+|.+++. .++. ....+..+..++++.+.++.... ..|..++..+
T Consensus 148 -------~~~i~A~~VI~AdG~~s~v~~~----lg~~--~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g 214 (429)
T PRK10015 148 -------DDILEANVVILADGVNSMLGRS----LGMV--PASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAG 214 (429)
T ss_pred -------CeEEECCEEEEccCcchhhhcc----cCCC--cCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecC
Confidence 3679999999999999988775 3554 24567788899998887654321 2466777777
Q ss_pred cCCCCCCcceEEEEEeCCCeEEEEEEEcC-CCCCCCCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcc
Q 006778 334 WPLDQKTYGGSFLYHMNDRQIALGLVVAL-NYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (631)
Q Consensus 334 ~~~~~~~~G~~~~~~~~~~~~~ig~~~~~-d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~ 412 (631)
+|. .+.+|++|+|+..+ .++||++... ++.+...++.+.+++|+.||.+++++++++..++.++.+|.+|+..+|++
T Consensus 215 ~~~-~g~~g~G~~~~~~d-~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~ 292 (429)
T PRK10015 215 SPS-DGLMGGGFLYTNKD-SISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQL 292 (429)
T ss_pred ccC-CCCCCceEEEEcCC-cEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeEEcccCCcccCCcc
Confidence 776 34678899999765 7999997654 33444567888889999999999999999999999999999999989999
Q ss_pred cCCCEEEEccCCccCCC--CCCcchHHHHHHHHHHHHHHhcccCC----CchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 413 VFPGGAIIGCAAGFLNV--PKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 413 ~~~~v~LiGDAA~~~~P--~~g~G~~~Al~sa~~aA~~l~~~l~~----~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
+.+|+++|||||++++| ++|+|+++||.||.+||+++.+++.. ...|..|++.|+++|+.++|+..|++..+|.
T Consensus 293 ~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~ 372 (429)
T PRK10015 293 VNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALME 372 (429)
T ss_pred ccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHCHHHHHHHHHhChHhhhc
Confidence 99999999999999984 69999999999999999999988763 3568999999999999999999999999984
Q ss_pred ----hcchHHHHHHHHHHHHhcCCC
Q 006778 487 ----YGLLPGLAICGLEHYILRGKS 507 (631)
Q Consensus 487 ----~g~~~~~~~~~~~~~~~~~~~ 507 (631)
+..|+.++...+..++.....
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (429)
T PRK10015 373 NPRLFSQYPRMVADIMNDMFTIDGK 397 (429)
T ss_pred CccHHHHHHHHHHHHHHHhcccCCc
Confidence 577899999999988875433
No 4
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=100.00 E-value=2.1e-38 Score=344.21 Aligned_cols=368 Identities=27% Similarity=0.473 Sum_probs=288.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (631)
+.|||+||||||||+++|+.|++. |++|+||||.+.++....+|+.+....+.++++.+... .+....+..+.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~------G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~-~~~~~~~~~~~ 76 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLARE------GAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADS-APVERLITHEK 76 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhC------CCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhc-Ccccceeeeee
Confidence 359999999999999999999999 99999999999888777778888888887777765432 23332233333
Q ss_pred eEeeccCCcccCC--CC---CCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCC
Q 006778 186 FWFLTKDRAFSLP--SP---FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (631)
Q Consensus 186 ~~~l~~~~~~~~p--~~---~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G 260 (631)
+.++.....+.+. .. ......|.+.|..|.++|.+++++.|++|+.+++|++++.++ +.+++|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~~~-------- 147 (428)
T PRK10157 77 LAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVEAD-------- 147 (428)
T ss_pred EEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEEcC--------
Confidence 4444433222211 11 112246889999999999999999999999999999998765 556555532
Q ss_pred CccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCC--------CCCCcEEEEe
Q 006778 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK--------HNPGEILHTL 332 (631)
Q Consensus 261 ~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~g~~~h~~ 332 (631)
|.+++||+||+|+|.+|.++++ +++.. ...+...++++++.++++... ...+.++++.
T Consensus 148 --------g~~i~A~~VI~A~G~~s~l~~~----lgl~~--~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (428)
T PRK10157 148 --------GDVIEAKTVILADGVNSILAEK----LGMAK--RVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFA 213 (428)
T ss_pred --------CcEEECCEEEEEeCCCHHHHHH----cCCCC--CCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEE
Confidence 4679999999999999876664 56652 345667788888877665321 1245677777
Q ss_pred ccCCCCCCcceEEEEEeCCCeEEEEEEEcCCC-CCCCCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCc
Q 006778 333 GWPLDQKTYGGSFLYHMNDRQIALGLVVALNY-HNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPY 411 (631)
Q Consensus 333 ~~~~~~~~~G~~~~~~~~~~~~~ig~~~~~d~-~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~ 411 (631)
+.|. .+.+|++|+|+.. +.++||++...+. .+....+.+.++.|+.||.++..+..++.++|.++.+|.+++...|+
T Consensus 214 g~~~-~g~~ggG~~~~~~-~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~ 291 (428)
T PRK10157 214 GSPT-DGLMGGGFLYTNE-NTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPE 291 (428)
T ss_pred ECCC-CCCcCceeEEEcC-CeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhhHhhcCCcccCCc
Confidence 8774 4578889999865 4899999876653 23345677888899999999999998898999999999999888899
Q ss_pred ccCCCEEEEccCCccCCC--CCCcchHHHHHHHHHHHHHHhcccCCC----chHHHHHHHHHHhHHHHHHHHHhccchhh
Q 006778 412 PVFPGGAIIGCAAGFLNV--PKIKGTHTAMKSGMLAAEAGFGVLHED----SNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (631)
Q Consensus 412 ~~~~~v~LiGDAA~~~~P--~~g~G~~~Al~sa~~aA~~l~~~l~~~----~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (631)
+..+++++|||||++++| +.|+|++.||.+|.+||+++.+++..+ ..|..|++.++++ +.++|+..+++..++
T Consensus 292 ~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~-~~~~l~~~~~~~~~~ 370 (428)
T PRK10157 292 LVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESG-PLRDMRMYQKLPAFL 370 (428)
T ss_pred eecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHh-HHHHHHHHhccHHHh
Confidence 999999999999999998 599999999999999999999887642 5689999999998 789999999999888
Q ss_pred h----hcchHHHHHHHHHHHHhcCC
Q 006778 486 E----YGLLPGLAICGLEHYILRGK 506 (631)
Q Consensus 486 ~----~g~~~~~~~~~~~~~~~~~~ 506 (631)
+ +..|+.++...+..++....
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (428)
T PRK10157 371 DNPRMFSGYPELAVGVARDLFTIDG 395 (428)
T ss_pred cCccHHHHHHHHHHHHHHHheeeCC
Confidence 4 57889999999998887543
No 5
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.98 E-value=1.2e-29 Score=275.87 Aligned_cols=338 Identities=18% Similarity=0.218 Sum_probs=218.2
Q ss_pred cCccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccC
Q 006778 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (631)
Q Consensus 104 ~~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~ 183 (631)
..+.|||+||||||||+++|+.|++. |++|+|+||.... ...+|+.++...+.++ ..+.. .....+
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~------G~~VlllEr~~~~--~k~cgg~i~~~~l~~l-gl~~~---~~~~~i-- 101 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKG------GIETFLIERKLDN--AKPCGGAIPLCMVGEF-DLPLD---IIDRKV-- 101 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCCC--CCCccccccHhHHhhh-cCcHH---HHHHHh--
Confidence 34679999999999999999999999 9999999998642 2346777776655443 11100 000011
Q ss_pred cceEeecc-CCcccCCCCCCCCC-cEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCC-CcEEEEEeCCCcc-ccC
Q 006778 184 DKFWFLTK-DRAFSLPSPFSNRG-NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDAD-NKVIGIGTNDMGI-AKD 259 (631)
Q Consensus 184 ~~~~~l~~-~~~~~~p~~~~~~~-~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~-g~v~gV~~~d~g~-~~~ 259 (631)
..+.+... ...+.++......+ .++++|..|.++|.++|++.|++++.+ .++++..+++ +..+.|.+.+... ..+
T Consensus 102 ~~~~~~~p~~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~ 180 (450)
T PLN00093 102 TKMKMISPSNVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGA 180 (450)
T ss_pred hhheEecCCceEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccC
Confidence 11122221 11222221111111 235899999999999999999999876 5777765321 1222454432100 011
Q ss_pred CCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCC--CCCCCcEEEEeccCCC
Q 006778 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEG--KHNPGEILHTLGWPLD 337 (631)
Q Consensus 260 G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~g~~~h~~~~~~~ 337 (631)
|+ +.+++||+||+|||.+|.+++.+ ++. ...+..+++..+.++.. ....+....+++....
T Consensus 181 g~-------~~~v~a~~VIgADG~~S~vrr~l----g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 243 (450)
T PLN00093 181 GT-------PKTLEVDAVIGADGANSRVAKDI----DAG------DYDYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVS 243 (450)
T ss_pred CC-------ccEEEeCEEEEcCCcchHHHHHh----CCC------CcceeEEEEEEEeCChhhccccCCeEEEEeCCCCC
Confidence 22 35799999999999999999865 443 13456777765555542 2334445555665555
Q ss_pred CCCcceEEEEEeCCCeEEEEEEEcCCCCCCCCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcccCCCE
Q 006778 338 QKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (631)
Q Consensus 338 ~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v 417 (631)
++ +++|+||..+ .+.||+..... . .+..+.++.+.. .+...+.+++.+......+|.+ ..+++..+|+
T Consensus 244 p~--~Y~WifP~g~-~~~VG~g~~~~--~--~~~~~~~~~l~~--~~~~~l~~~~~~~~~~~~ip~~---~~~~~~~~~v 311 (450)
T PLN00093 244 PD--FYGWVFPKCD-HVAVGTGTVVN--K--PAIKKYQRATRN--RAKDKIAGGKIIRVEAHPIPEH---PRPRRVRGRV 311 (450)
T ss_pred CC--ceEEEEECCC-cEEEEEEEccC--C--CChHHHHHHHHH--HhhhhcCCCeEEEEEEEEcccc---cccceeCCCc
Confidence 54 3489999985 57888764321 1 122222223321 1223344455666555566653 3457888999
Q ss_pred EEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC------CchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 418 ~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~------~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
+|||||||+++|++|+|++.||.+|.+||+++.+++.. ...|..|++.|++. +.++++....++.+|.
T Consensus 312 lLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~-~g~~~~~~~~l~~~~~ 385 (450)
T PLN00093 312 ALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKK-YWPTYKVLDILQKVFY 385 (450)
T ss_pred EEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999987643 25689999999976 7888888888888773
No 6
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.97 E-value=4.2e-29 Score=268.95 Aligned_cols=332 Identities=17% Similarity=0.210 Sum_probs=213.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHH--hhhhhhcCCCeeeeccCcc
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL--LPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l--~~~~~~~~~~~~~~~~~~~ 185 (631)
+||+||||||||+++|+.|++. |++|+|+||....+. .+|+.++...+.++ .+.+.. ..+ ..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~------G~~V~llE~~~~~~~--~cg~~i~~~~l~~~g~~~~~~~------~~i--~~ 64 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA------GIQTFLLERKPDNAK--PCGGAIPLCMVDEFALPRDIID------RRV--TK 64 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCcEEEEecCCCCCC--CccccccHhhHhhccCchhHHH------hhh--ce
Confidence 5899999999999999999999 999999999875543 35777776665443 111111 001 11
Q ss_pred eEeecc-CCcccCCCCCCCCC-cEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcC-CCcEEEEEeCCCc-cccCCC
Q 006778 186 FWFLTK-DRAFSLPSPFSNRG-NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDA-DNKVIGIGTNDMG-IAKDGS 261 (631)
Q Consensus 186 ~~~l~~-~~~~~~p~~~~~~~-~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~-~g~v~gV~~~d~g-~~~~G~ 261 (631)
+.+... ...+.+.......+ .++++|..|.++|.++|.+.|++++.++ ++++.... .+..++|++.... ....|+
T Consensus 65 ~~~~~p~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~ 143 (398)
T TIGR02028 65 MKMISPSNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGT 143 (398)
T ss_pred eEEecCCceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCC
Confidence 122221 11122221111111 2469999999999999999999998885 76765422 1233345432200 001132
Q ss_pred ccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCC--CCCCcEEEEeccCCCCC
Q 006778 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK--HNPGEILHTLGWPLDQK 339 (631)
Q Consensus 262 ~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~g~~~h~~~~~~~~~ 339 (631)
..+++||+||+|||.+|.+++.+ ++. ...+...+...++++... .....+..+++-...++
T Consensus 144 -------~~~i~a~~VIgADG~~S~v~~~~----g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~ 206 (398)
T TIGR02028 144 -------RCTLEVDAVIGADGANSRVAKEI----DAG------DYSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPD 206 (398)
T ss_pred -------ccEEEeCEEEECCCcchHHHHHh----CCC------CcceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCC
Confidence 25799999999999999998865 443 123455666555555432 22333444455444444
Q ss_pred CcceEEEEEeCCCeEEEEEEEcCCCCCCCCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcccCCCEEE
Q 006778 340 TYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAI 419 (631)
Q Consensus 340 ~~G~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~L 419 (631)
|+.|+||.++ .+.||+.... . ....+.+..+.... ....+.+++.+......+|.+. .+++..+|++|
T Consensus 207 --gY~WifP~~~-~~~VG~g~~~--~---~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ip~~~---~~~~~~~~~ll 274 (398)
T TIGR02028 207 --FYGWVFPKCD-HVAVGTGTVA--A---KPEIKRLQSGIRAR-AAGKVAGGRIIRVEAHPIPEHP---RPRRVVGRVAL 274 (398)
T ss_pred --ceEEEEECCC-eEEEEEEeCC--C---CccHHHHHHhhhhh-hhhccCCCcEEEEEEEeccccc---cccEECCCEEE
Confidence 3589999985 5678876421 1 11223333322111 1222334455555555566542 35788899999
Q ss_pred EccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC------CchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 420 IGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 420 iGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~------~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
||||||+++|++|+|+++||.||.+||+++.+++.. ...|..|++.|++. +.++++....++.+|.
T Consensus 275 vGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~-~~~~~~~~~~~~~~~~ 346 (398)
T TIGR02028 275 VGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKE-YRPTYRVLDLLQRVFY 346 (398)
T ss_pred EEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999987643 25689999999976 7888888888888774
No 7
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.97 E-value=5.8e-29 Score=267.68 Aligned_cols=325 Identities=18% Similarity=0.278 Sum_probs=208.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHH-h-hhhhhcCCCeeeeccCcc
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL-L-PQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l-~-~~~~~~~~~~~~~~~~~~ 185 (631)
|||+||||||||+++|+.|++. |++|+|+|+.. +....+|+.+++..+.++ + +.+.. ..+ ..
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~------G~~V~l~E~~~--~~~~~cg~~i~~~~l~~l~i~~~~~~------~~~--~~ 64 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA------GIETILLERAL--SNIKPCGGAIPPCLIEEFDIPDSLID------RRV--TQ 64 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEECCC--CCcCcCcCCcCHhhhhhcCCchHHHh------hhc--ce
Confidence 7999999999999999999999 99999999972 222346777877665443 1 11111 011 12
Q ss_pred eEeeccCC-cccCCCCCCCCCcE--EEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCcccc-CCC
Q 006778 186 FWFLTKDR-AFSLPSPFSNRGNY--VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAK-DGS 261 (631)
Q Consensus 186 ~~~l~~~~-~~~~p~~~~~~~~~--~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~-~G~ 261 (631)
..+..... .+... +.....| +++|..|.++|.+++.+.|++++.+ .|+++..++++ + .|.+.+ +..+ +|+
T Consensus 65 ~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~-~-~v~~~~-~~~~~~~~ 138 (388)
T TIGR02023 65 MRMISPSRVPIKVT--IPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG-V-TLTYRT-PKKGAGGE 138 (388)
T ss_pred eEEEcCCCceeeec--cCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe-E-EEEEEe-ccccCCCc
Confidence 22222211 11111 1111233 5899999999999999999999865 68898776643 3 455442 1001 111
Q ss_pred ccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCC--CCCCCcEEEEeccCCCCC
Q 006778 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEG--KHNPGEILHTLGWPLDQK 339 (631)
Q Consensus 262 ~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~g~~~h~~~~~~~~~ 339 (631)
..+++||+||+|||.+|.+++.+ ++.. +..+..+++..+.++.. ...++....+++.+..++
T Consensus 139 -------~~~i~a~~VI~AdG~~S~v~r~l----g~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 202 (388)
T TIGR02023 139 -------KGSVEADVVIGADGANSPVAKEL----GLPK-----NLPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPD 202 (388)
T ss_pred -------ceEEEeCEEEECCCCCcHHHHHc----CCCC-----CCcEEEEEEEEecCCchhcccCCCeEEEEECCCcCCC
Confidence 25799999999999999988754 4441 22345566655544432 123444444455555554
Q ss_pred CcceEEEEEeCCCeEEEEEEEcCCCCCCCCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcccCCCEEE
Q 006778 340 TYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAI 419 (631)
Q Consensus 340 ~~G~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~L 419 (631)
++.|++|..+ .+.+|...... .....+.++.+..... ++..+.+......++.. ..+++..+++++
T Consensus 203 --~y~wv~P~~~-~~~vg~~~~~~----~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~ip~~---~~~~~~~~~v~l 268 (388)
T TIGR02023 203 --FYGWVFPKGD-HIAVGTGTGTH----GFDAKQLQANLRRRAG----LDGGQTIRREAAPIPMK---PRPRWDFGRAML 268 (388)
T ss_pred --ceEEEeeCCC-eeEEeEEECCC----CCCHHHHHHHHHHhhC----CCCceEeeeeeEecccc---ccccccCCCEEE
Confidence 3589999975 67788764311 1222333334433221 23333443333345542 345778899999
Q ss_pred EccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC--CchHHHHHHHHHHhHHHHHHHHHhccchhh
Q 006778 420 IGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (631)
Q Consensus 420 iGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~--~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (631)
||||||+++|++|+|+++||.+|.++|++|.+++.. ...|..|++.|++. +.+++...+..+.++
T Consensus 269 vGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~~~~L~~Y~~~~~~~-~~~~~~~~~~~~~~~ 335 (388)
T TIGR02023 269 VGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGDATDLRHYERKFMKL-YGTTFRVLRVLQMVY 335 (388)
T ss_pred EeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998754 35689999999976 566665555554444
No 8
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=1.7e-28 Score=253.53 Aligned_cols=293 Identities=24% Similarity=0.286 Sum_probs=194.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
|||+||||||+||++|+.|++. |++|+|+||+...+. ..++..+.+..+..+ ..+... ... ......
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~------g~~v~vie~~~~~~~-~~~~~~~~~~~~~~l-~~~~~~--~~~---~~~~~~ 67 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK------GLRVLLLEKKSFPRY-KPCGGALSPRVLEEL-DLPLEL--IVN---LVRGAR 67 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCCCCc-ccccCccCHhHHHHh-cCCchh--hhh---heeeEE
Confidence 6999999999999999999999 999999999987654 456666777666433 111110 000 011112
Q ss_pred eeccCC-cccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 188 FLTKDR-AFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 188 ~l~~~~-~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
+..... ....+ ......+.++|..+.+.|.+.+++.|++++++++|+++..++++ + .+.+.+
T Consensus 68 ~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~-~-~~~~~~------------- 130 (295)
T TIGR02032 68 FFSPNGDSVEIP--IETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR-V-VVIVRG------------- 130 (295)
T ss_pred EEcCCCcEEEec--cCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE-E-EEEEcC-------------
Confidence 222111 11111 11233678999999999999999999999999999999887643 3 243332
Q ss_pred cCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEE
Q 006778 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFL 346 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~~~~G~~~~ 346 (631)
++.+++||+||+|+|.+|.+++++ ++.. .+..++.++...+..+...........+.++..... +..|+
T Consensus 131 -~~~~~~a~~vv~a~G~~s~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 199 (295)
T TIGR02032 131 -GEGTVTAKIVIGADGSRSIVAKKL----GLRK----EPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPG--GYGWV 199 (295)
T ss_pred -ccEEEEeCEEEECCCcchHHHHhc----CCCC----CCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCC--ceEEE
Confidence 146899999999999999877743 5542 233445566555555543334444444444433333 44899
Q ss_pred EEeCCCeEEEEEEEcCCCCCCCCCcHHHHHHhh-cCcchhccccCCceeeecceeeccCCcccCCcccCCCEEEEccCCc
Q 006778 347 YHMNDRQIALGLVVALNYHNPFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAG 425 (631)
Q Consensus 347 ~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~-~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~LiGDAA~ 425 (631)
+|++++.+.++++..... +..+..+.++.+. .+|. ++..+..+.....++... ..+++..+|++++|||||
T Consensus 200 ~P~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~--~~~~~~~~~v~liGDAA~ 271 (295)
T TIGR02032 200 FPKGDGTANVGVGSRSAE--EGEDLKKYLKDFLARRPE----LKDAETVEVIGAPIPIGR--PDDKTVRGNVLLVGDAAG 271 (295)
T ss_pred EeCCCCeEEEeeeeccCC--CCCCHHHHHHHHHHhCcc----cccCcEEeeeceeeccCC--CCCccccCCEEEEecccC
Confidence 999999999998765432 2345556666664 3444 333334433222344322 345778899999999999
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHH
Q 006778 426 FLNVPKIKGTHTAMKSGMLAAEAG 449 (631)
Q Consensus 426 ~~~P~~g~G~~~Al~sa~~aA~~l 449 (631)
+++|+.|||+++||+||.+||++|
T Consensus 272 ~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 272 HVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CCCCccCCcHHHHHHHHHHHHhhC
Confidence 999999999999999999999875
No 9
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.97 E-value=6.3e-28 Score=259.37 Aligned_cols=336 Identities=20% Similarity=0.174 Sum_probs=204.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC-CCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCc-
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA-EVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD- 184 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~-~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~- 184 (631)
.+||+||||||+||++|+.|++. |++|+||||.+ ..-. ...+..+.+.++ +++..++.............
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~------G~~V~l~E~~~~~~~~-~~r~~~l~~~~~-~~L~~lG~~~~i~~~~~~~~~ 73 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA------GLDVTLLERAPRELLE-RGRGIALSPNAL-RALERLGLWDRLEALGVPPLH 73 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC------CCcEEEEccCcccccc-CceeeeecHhHH-HHHHHcCChhhhhhccCCcee
Confidence 57999999999999999999999 99999999982 2222 125667777766 33333332000000011111
Q ss_pred ceEeeccC-CcccCC--CCCCCCCcEEEeHHHHHHHHHHHHHhcC-cEEecCceEEEEEEcCCCcEEEEEeC-CCccccC
Q 006778 185 KFWFLTKD-RAFSLP--SPFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTN-DMGIAKD 259 (631)
Q Consensus 185 ~~~~l~~~-~~~~~p--~~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~gV~~~-d~g~~~~ 259 (631)
.+.+.... ..+.+. ........+++.+..|.+.|.+.+.+.+ ++++.++.|+.+..+++ .|. |++. |
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-~v~-v~l~~d------ 145 (387)
T COG0654 74 VMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-GVT-VTLSFD------ 145 (387)
T ss_pred eEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-ceE-EEEcCC------
Confidence 11111111 112222 1111344788999999999999999876 99999999999998874 453 6665 5
Q ss_pred CCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCCC
Q 006778 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK 339 (631)
Q Consensus 260 G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~~ 339 (631)
|.+++||+||+|||.+|.+|+.+ +............++.. .+.......+.....+. ..
T Consensus 146 ---------G~~~~a~llVgADG~~S~vR~~~----~~~~~~~~~y~~~~l~~----~~~~~~~~~~~~~~~~~---~~- 204 (387)
T COG0654 146 ---------GETLDADLLVGADGANSAVRRAA----GIAEFSGRDYGQTALVA----NVEPEEPHEGRAGERFT---HA- 204 (387)
T ss_pred ---------CcEEecCEEEECCCCchHHHHhc----CCCCccCCCCCceEEEE----EeecCCCCCCeEEEEec---CC-
Confidence 67999999999999999999976 32210111111222211 22221222333332221 11
Q ss_pred CcceEEEEEeCCCeEEEEEEEcCCC--CCCCCCcHHHHHHhh-cCcchhccccCCceeeecce-eeccCCcccCCcccCC
Q 006778 340 TYGGSFLYHMNDRQIALGLVVALNY--HNPFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGAR-TLNEGGLQSIPYPVFP 415 (631)
Q Consensus 340 ~~G~~~~~~~~~~~~~ig~~~~~d~--~~~~~~~~~~~~~~~-~~p~i~~~l~~~~~~~~~~~-~i~~gg~~~~p~~~~~ 415 (631)
|..-++|++++...+.+...... ........+..+.+. ..+.... +. .....+.+ .++.. .....+|..+
T Consensus 205 --~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~--~~~~~~~~~~~pl~-~~~a~~~~~~ 278 (387)
T COG0654 205 --GPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGERDP-LG--RVTLVSSRSAFPLS-LRVAERYRRG 278 (387)
T ss_pred --CceEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhcCcccc-cc--eEEEcccccccccc-chhhhheecC
Confidence 23467888866666666654321 111122221111111 1111111 11 11111111 12221 1123467779
Q ss_pred CEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC---CchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 416 GGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 416 ~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
|++|+|||||.++|+.|||+|+||+|+..||+.|.+.... ...|++|+++++.. ..+.+..++.+...|.
T Consensus 279 Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~~ 351 (387)
T COG0654 279 RVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPR-AEAIQKLSRALGRLFS 351 (387)
T ss_pred cEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhH-HHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999998763 57799999999875 7777777776666664
No 10
>PRK07045 putative monooxygenase; Reviewed
Probab=99.96 E-value=1.5e-27 Score=256.95 Aligned_cols=341 Identities=16% Similarity=0.157 Sum_probs=201.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeee-eccCc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV-PVSSD 184 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~-~~~~~ 184 (631)
..+||+||||||+||++|+.|++. |++|+|+||.+...... .+..+.+.++. ++..++..+..... .....
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~------G~~v~v~E~~~~~~~~~-~~~~l~~~~~~-~L~~lGl~~~~~~~~~~~~~ 75 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR------GHSVTVVERAARNRAQN-GADLLKPSGIG-VVRAMGLLDDVFAAGGLRRD 75 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc------CCcEEEEeCCCcccCCC-cccccCccHHH-HHHHcCCHHHHHhccccccc
Confidence 458999999999999999999999 99999999998653211 12335555442 22221111000000 00011
Q ss_pred ceEeeccCC-cccCCCCC-CCCC-cEEEeHHHHHHHHHHHHHh-cCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCC
Q 006778 185 KFWFLTKDR-AFSLPSPF-SNRG-NYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (631)
Q Consensus 185 ~~~~l~~~~-~~~~p~~~-~~~~-~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G 260 (631)
.+.+..... ...++... ...+ ...++|..|.+.|.+.+.+ .|++++++++++++..++++.++.|++.+
T Consensus 76 ~~~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~------- 148 (388)
T PRK07045 76 AMRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD------- 148 (388)
T ss_pred ceEEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC-------
Confidence 122211111 01111111 1112 2457899999999998865 57999999999999988777666777765
Q ss_pred CccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCC
Q 006778 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKT 340 (631)
Q Consensus 261 ~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~~~ 340 (631)
|.++.+|+||+|||.+|.+|+++ +++.............+.- ...... ......+++ ...
T Consensus 149 --------g~~~~~~~vIgADG~~S~vR~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~---~~~- 208 (388)
T PRK07045 149 --------GERVAPTVLVGADGARSMIRDDV---LRMPAERVPYATPMAFGTI---ALTDSV--RECNRLYVD---SNQ- 208 (388)
T ss_pred --------CCEEECCEEEECCCCChHHHHHh---hCCCcccCCCCcceeEEEE---eccCCc--cccceEEEc---CCC-
Confidence 67899999999999999999875 2332100111222222321 111111 111111121 111
Q ss_pred cceEEEEEeCCCeEEEEEEEcCCCCCCCCC---cHHHHHHhhcC--cchhccccCCc-eeeecceeeccCCcccCCcccC
Q 006778 341 YGGSFLYHMNDRQIALGLVVALNYHNPFLN---PYEEFQKFKHH--PAIKPLLEGGT-VVQYGARTLNEGGLQSIPYPVF 414 (631)
Q Consensus 341 ~G~~~~~~~~~~~~~ig~~~~~d~~~~~~~---~~~~~~~~~~~--p~i~~~l~~~~-~~~~~~~~i~~gg~~~~p~~~~ 414 (631)
|..|+||+.++...+.+....+....... ..+..+.+... +.+.+.++... ...+. .++.. ....++|..
T Consensus 209 -~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~ 284 (388)
T PRK07045 209 -GLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFP--LIPLG-RMNLDRYHK 284 (388)
T ss_pred -ceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccc--eeecC-ccccccccC
Confidence 33578898887777776654332211111 11111222211 22222221110 01111 11111 123467888
Q ss_pred CCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC----CchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~----~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
+|++|||||||.++|+.|||+++||+||..||++|...+.. ..+|+.|++.|+.. ....+...+.+...|+
T Consensus 285 grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 359 (388)
T PRK07045 285 RNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPV-NEAVISYGHALATTYH 359 (388)
T ss_pred CCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhH-HHHHHhhhHHHhhhcc
Confidence 99999999999999999999999999999999999876543 36799999999864 6666666666666664
No 11
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.96 E-value=8.6e-28 Score=257.29 Aligned_cols=328 Identities=14% Similarity=0.170 Sum_probs=196.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCc---cccccccChHhHHHH--hhhhhhcCCCeeeecc
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH---IISGNVFEPRALNEL--LPQWKQEEAPIRVPVS 182 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~---~~~g~~i~~~~l~~l--~~~~~~~~~~~~~~~~ 182 (631)
+||+||||||+|+++|+.|++. |++|+|+|+.+..... ...+..+.+.++.-+ +..|..... ....
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~------G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~---~~~~ 72 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK------GIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEK---FVAE 72 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC------CCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHh---hcCC
Confidence 6999999999999999999999 9999999987432111 123555666654221 222322110 0011
Q ss_pred CcceEeeccC--CcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcC-cEEecCceEEEEEEcCCCcEEEEEeCCCccccC
Q 006778 183 SDKFWFLTKD--RAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (631)
Q Consensus 183 ~~~~~~l~~~--~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~ 259 (631)
...+.+.+.. ..+.++.......+|++.|..|.+.|.+.+.+.+ ++++++++++++..++++ + .|.+.+
T Consensus 73 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~------ 144 (374)
T PRK06617 73 MQDIYVVDNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-S-IIKFDD------ 144 (374)
T ss_pred CcEEEEEECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcC------
Confidence 1122222211 1122221111123689999999999999998875 999999999999887653 3 466654
Q ss_pred CCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCCC
Q 006778 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK 339 (631)
Q Consensus 260 G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~~ 339 (631)
+ +++||+||+|||.+|.+|+.+ +... .. ..|..++ .+.++......+.....+ .+
T Consensus 145 ---------~-~~~adlvIgADG~~S~vR~~l----~~~~--~~--~~y~~~~--~~~v~~~~~~~~~~~~~~-~~---- 199 (374)
T PRK06617 145 ---------K-QIKCNLLIICDGANSKVRSHY----FANE--IE--KPYQTAL--TFNIKHEKPHENCAMEHF-LP---- 199 (374)
T ss_pred ---------C-EEeeCEEEEeCCCCchhHHhc----CCCc--cc--ccCCeEE--EEEEeccCCCCCEEEEEe-cC----
Confidence 4 899999999999999999865 3331 11 1122222 223332222233222222 11
Q ss_pred CcceEEEEEeCCCe-EEEEEEEcCCCCCC-CCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcccCCCE
Q 006778 340 TYGGSFLYHMNDRQ-IALGLVVALNYHNP-FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (631)
Q Consensus 340 ~~G~~~~~~~~~~~-~~ig~~~~~d~~~~-~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v 417 (631)
.|..+++|+.++. ..+.+....+.... ...+.+++..+.. +.+...+..-. .......++-.. ...++|..+|+
T Consensus 200 -~g~~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~-~~~~~~~~~l~~-~~~~~~~~grv 275 (374)
T PRK06617 200 -LGPFALLPLKDQYASSVIWSTSSDQAALIVNLPVEEVRFLTQ-RNAGNSLGKIT-IDSEISSFPLKA-RIANRYFHNRI 275 (374)
T ss_pred -CCCEEEeECCCCCeEEEEEeCCHHHHHHHHcCCHHHHHHHHH-HhhchhcCcee-eccceeEEEeee-eeccceecCCE
Confidence 1336788998775 45555443211000 0112223322211 11111121100 000011111111 13468899999
Q ss_pred EEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 418 ~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
+|+|||||.++|..|||+|+||+||..|++.|.. ..+|++|++.|+.. ....+...+.+..+|.
T Consensus 276 ~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~----~~~L~~Ye~~R~~~-~~~~~~~t~~l~~~f~ 339 (374)
T PRK06617 276 VLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN----NGTLQEYQKLRQED-NFIMYKLTDELNNIFS 339 (374)
T ss_pred EEEEcccccCCCCccccHHHHHHHHHHHHHHHcC----cchHHHHHHHHhHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999842 36899999999876 7777788887777775
No 12
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.96 E-value=1.6e-28 Score=260.17 Aligned_cols=330 Identities=20% Similarity=0.234 Sum_probs=183.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhh------hcCCCee--
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWK------QEEAPIR-- 178 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~------~~~~~~~-- 178 (631)
++||+||||||+||++|+.|++. |++|+||||.+..... ..|..+.+.++. ++..+. ....+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~------G~~v~i~E~~~~~~~~-~~~~~l~~~~~~-~l~~lgl~~~~~~~~~~~~~~ 72 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA------GIDVTIIERRPDPRPK-GRGIGLSPNSLR-ILQRLGLLDEILARGSPHEVM 72 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT------TCEEEEEESSSSCCCS-SSSEEEEHHHHH-HHHHTTEHHHHHHHSEEECEE
T ss_pred CceEEEECCCHHHHHHHHHHHhc------ccccccchhccccccc-cccccccccccc-ccccccchhhhhhhcccccce
Confidence 47999999999999999999999 9999999998875433 256667776653 333322 1111100
Q ss_pred -eeccC----cceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCC
Q 006778 179 -VPVSS----DKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (631)
Q Consensus 179 -~~~~~----~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d 253 (631)
..... ...+.........+.........+.+.|..|.++|.+.+++.|++|+++++++++..++++..+.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~- 151 (356)
T PF01494_consen 73 RIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDG- 151 (356)
T ss_dssp EEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEET-
T ss_pred eeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccc-
Confidence 00000 000000000001111112223367799999999999999999999999999999988875422222222
Q ss_pred CccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEE-EEeecCCCCCCCcEEEEe
Q 006778 254 MGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKE-VWEIDEGKHNPGEILHTL 332 (631)
Q Consensus 254 ~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~g~~~h~~ 332 (631)
.+|+ ..+++||+||+|||.+|.+|+.+ +... ......+..+... ...........+ ..++
T Consensus 152 ----~~g~-------~~~i~adlvVgADG~~S~vR~~l----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 212 (356)
T PF01494_consen 152 ----EDGE-------EETIEADLVVGADGAHSKVRKQL----GIDR--PGPDTVYRWGWFGIVFDSDLSDPWED--HCFI 212 (356)
T ss_dssp ----CTCE-------EEEEEESEEEE-SGTT-HHHHHT----TGGE--EEEEEEEEEEEEEEEEECHSHTTTSC--EEEE
T ss_pred ----cCCc-------eeEEEEeeeecccCcccchhhhc----cccc--cCcccccccccccccccccccccccc--cccc
Confidence 2333 25899999999999999999865 3331 1111111122211 112211111222 1111
Q ss_pred ccCCCCCCcceEEEEEeCC-CeEEEEEEEcCCCCCCCCCc----HHHHHHhhcCcchhccccCCceeeecceeeccCCcc
Q 006778 333 GWPLDQKTYGGSFLYHMND-RQIALGLVVALNYHNPFLNP----YEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQ 407 (631)
Q Consensus 333 ~~~~~~~~~G~~~~~~~~~-~~~~ig~~~~~d~~~~~~~~----~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~ 407 (631)
..+ ..++.+++|..+ +...+.+....+........ .+.++.+... +............. .++... .
T Consensus 213 ~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~-~ 283 (356)
T PF01494_consen 213 YSP----PSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEI--FGPDLLETEIDEIS--AWPIPQ-R 283 (356)
T ss_dssp EEE----TTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHH--HHTCHHHHEEEEEE--EEEEEE-E
T ss_pred ccc----cccceeEeeccCCccceEEEeeecccccccccccccccccccccccc--cccccccccccccc--cccccc-c
Confidence 111 113347888877 44444444443322211111 1111222111 11100000111111 111111 1
Q ss_pred cCCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC---CchHHHHHHHHHHhHHHHH
Q 006778 408 SIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQE 474 (631)
Q Consensus 408 ~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~---~~~l~~Y~~~~~~~~~~~~ 474 (631)
..++|..+|++|||||||.|+|+.|||+++||+||..||+.|...... .++|+.|++.|+.+ ..+.
T Consensus 284 ~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~-~~~~ 352 (356)
T PF01494_consen 284 VADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERRPR-ARKA 352 (356)
T ss_dssp EESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH-HHHH
T ss_pred cccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HHHH
Confidence 234677889999999999999999999999999999999999987653 36799999999975 4433
No 13
>PRK08013 oxidoreductase; Provisional
Probab=99.96 E-value=1.2e-27 Score=258.49 Aligned_cols=336 Identities=15% Similarity=0.115 Sum_probs=195.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCc-----cccccccChHhHHHHhhhhhhcCCCeee-e
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH-----IISGNVFEPRALNELLPQWKQEEAPIRV-P 180 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~-----~~~g~~i~~~~l~~l~~~~~~~~~~~~~-~ 180 (631)
++||+||||||+|+++|+.|++. |++|+||||.+..... ...+..+++..+ +++..++..+..... .
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~------G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~-~~L~~lGl~~~~~~~~~ 75 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS------GLRVAVLEQRVPEPLAADAPPALRVSAINAASE-KLLTRLGVWQDILARRA 75 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC------CCEEEEEeCCCCcccccCCCCCceeeecchhHH-HHHHHcCCchhhhhhcC
Confidence 58999999999999999999999 9999999998764321 112334556544 333333221111110 1
Q ss_pred ccCcceEeeccC--CcccCCCCC--CCCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCc
Q 006778 181 VSSDKFWFLTKD--RAFSLPSPF--SNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (631)
Q Consensus 181 ~~~~~~~~l~~~--~~~~~p~~~--~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g 255 (631)
...+.+.+.+.. ..+.+.... .....|.+.|..|.+.|.+.+.+. |++++++++|+++..++++ + .|.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v-~v~~~~-- 151 (400)
T PRK08013 76 SCYHGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE-A-FLTLKD-- 151 (400)
T ss_pred ccccEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-E-EEEEcC--
Confidence 111222222211 111111110 111257899999999999999885 7999999999999887654 3 455555
Q ss_pred cccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccC
Q 006778 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (631)
Q Consensus 256 ~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~ 335 (631)
|.+++||+||+|||.+|.+|+.+ ++... ....... ++.. .++......+.....+
T Consensus 152 -------------g~~i~a~lvVgADG~~S~vR~~~----~~~~~-~~~~~~~--~~~~--~v~~~~~~~~~~~~~~--- 206 (400)
T PRK08013 152 -------------GSMLTARLVVGADGANSWLRNKA----DIPLT-FWDYQHH--ALVA--TIRTEEPHDAVARQVF--- 206 (400)
T ss_pred -------------CCEEEeeEEEEeCCCCcHHHHHc----CCCcc-ccccCcE--EEEE--EEeccCCCCCEEEEEE---
Confidence 67899999999999999999975 55421 1111111 1111 2222222222222222
Q ss_pred CCCCCcceEEEEEeCCCe-EEEEEEEcCCCCCC-CCCcHHHHH-HhhcCcchhccccCCceeeecceeeccCCcccCCcc
Q 006778 336 LDQKTYGGSFLYHMNDRQ-IALGLVVALNYHNP-FLNPYEEFQ-KFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (631)
Q Consensus 336 ~~~~~~G~~~~~~~~~~~-~~ig~~~~~d~~~~-~~~~~~~~~-~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~ 412 (631)
... |..+++|..++. .++.+....+.... .....+.|. .+... +...+...+.... ...++... ...++|
T Consensus 207 ~~~---g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~l~~~~~~~~-~~~~~l~~-~~~~~~ 279 (400)
T PRK08013 207 HGD---GILAFLPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAIA--FDNRLGLCELESE-RQVFPLTG-RYARQF 279 (400)
T ss_pred cCC---CCEEEEECCCCCeEEEEEEcCHHHHHHHHcCCHHHHHHHHHHH--HhHhhCceEecCC-ccEEecce-eecccc
Confidence 111 235677876643 55665543221000 001111221 11110 0011111111100 00111111 135688
Q ss_pred cCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC----C--chHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 413 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----D--SNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 413 ~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~----~--~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
..+|++|+|||||.++|+.|||+|+||+||..||+.|...+.. . ..|++|++.|+.. ....+...+.+..+|.
T Consensus 280 ~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~l~~ 358 (400)
T PRK08013 280 AAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHS-AALMLAGMQGFRDLFA 358 (400)
T ss_pred cCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999764421 1 3599999988764 6666666676777664
No 14
>PRK07538 hypothetical protein; Provisional
Probab=99.96 E-value=2.4e-27 Score=257.30 Aligned_cols=335 Identities=18% Similarity=0.198 Sum_probs=192.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
.||+||||||+||++|+.|++. |++|+|+||.+.+.. ...|..+.+.++..+ ..+...............+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~-~g~gi~l~p~~~~~L-~~lgl~~~l~~~~~~~~~~~ 72 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR------GIEVVVFEAAPELRP-LGVGINLLPHAVREL-AELGLLDALDAIGIRTRELA 72 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEEcCCcccc-cCcceeeCchHHHHH-HHCCCHHHHHhhCCCCcceE
Confidence 3899999999999999999999 999999999986542 234555566555322 22211000000011112222
Q ss_pred eeccCCcc--cCCCC---CCCCCcEEEeHHHHHHHHHHHHHh-cC-cEEecCceEEEEEEcCCCcEEEEEeCCCccccCC
Q 006778 188 FLTKDRAF--SLPSP---FSNRGNYVISLSQLVRWLGGKAEE-LG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (631)
Q Consensus 188 ~l~~~~~~--~~p~~---~~~~~~~~v~~~~l~~~L~~~a~~-~G-v~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G 260 (631)
+.+..... ..+.. ......+.++|..|.+.|.+.+.+ .| ++|+++++|+++..++++.+ +.+.+ ..+|
T Consensus 73 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~---~~~g 147 (413)
T PRK07538 73 YFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGD---RAGG 147 (413)
T ss_pred EEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEec---cCCC
Confidence 22211111 11100 011224679999999999999866 47 46999999999988776633 33333 1122
Q ss_pred CccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceee-EEEEEEeecCCCCCCCcEEEEeccCCCCC
Q 006778 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYAL-GIKEVWEIDEGKHNPGEILHTLGWPLDQK 339 (631)
Q Consensus 261 ~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~h~~~~~~~~~ 339 (631)
+ +.+++||+||+|||.+|.+|+.+. ... ..+...+. .+... ++......+.....++.+ .
T Consensus 148 ~-------~~~~~adlvIgADG~~S~vR~~l~----~~~---~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~g~~--~- 208 (413)
T PRK07538 148 D-------LVSVRGDVLIGADGIHSAVRAQLY----PDE---GPPRWNGVMMWRGV--TEAPPFLTGRSMVMAGHL--D- 208 (413)
T ss_pred c-------cceEEeeEEEECCCCCHHHhhhhc----CCC---CCCcccceEEEEEe--ecCccccCCCcEEEEcCC--C-
Confidence 2 368999999999999999999762 221 11111111 11111 111122223222333221 1
Q ss_pred CcceEEEEEeCCC-----eEEEEEEE--cCC---CCC--CC---CCcHHHHHHhhcC-c---chhccccCC-ceeeecce
Q 006778 340 TYGGSFLYHMNDR-----QIALGLVV--ALN---YHN--PF---LNPYEEFQKFKHH-P---AIKPLLEGG-TVVQYGAR 399 (631)
Q Consensus 340 ~~G~~~~~~~~~~-----~~~ig~~~--~~d---~~~--~~---~~~~~~~~~~~~~-p---~i~~~l~~~-~~~~~~~~ 399 (631)
+..++||..++ ...+.|+. ..+ ... .+ ....+.++.|... + .+.++++.. ....
T Consensus 209 --~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---- 282 (413)
T PRK07538 209 --GKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYE---- 282 (413)
T ss_pred --CEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceee----
Confidence 22566776542 12233332 211 000 01 1111222233221 1 133444322 2221
Q ss_pred eeccCCcccCCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHhHHHHHHHHHh
Q 006778 400 TLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRAR 479 (631)
Q Consensus 400 ~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~~~~l~~Y~~~~~~~~~~~~l~~~r 479 (631)
.+......+++|..+|++|||||||.|+|+.|||+++||+||..||++|.+.-....+|+.|++.|+.+ ..+.+..++
T Consensus 283 -~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~~~~~~aL~~Ye~~R~~~-~~~~~~~s~ 360 (413)
T PRK07538 283 -YPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAHGDPEAALAAYEAERRPA-TAQIVLANR 360 (413)
T ss_pred -ccccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhHH-HHHHHHHhh
Confidence 122222356789999999999999999999999999999999999999987533357899999999976 777777766
Q ss_pred ccc
Q 006778 480 NYR 482 (631)
Q Consensus 480 ~~~ 482 (631)
...
T Consensus 361 ~~~ 363 (413)
T PRK07538 361 LNG 363 (413)
T ss_pred hcC
Confidence 633
No 15
>PRK08244 hypothetical protein; Provisional
Probab=99.96 E-value=7.1e-27 Score=259.24 Aligned_cols=338 Identities=17% Similarity=0.155 Sum_probs=195.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (631)
|++||+||||||+||++|+.|++. |++|+||||.+.... ...+..+.++++ +++..++..+...........
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~------G~~v~viEr~~~~~~-~~ra~~l~~~~~-e~l~~lGl~~~l~~~~~~~~~ 72 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALA------GVKTCVIERLKETVP-YSKALTLHPRTL-EILDMRGLLERFLEKGRKLPS 72 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCC-CcceeEecHHHH-HHHHhcCcHHHHHhhcccccc
Confidence 358999999999999999999999 999999999876432 234566777665 333332211000000000011
Q ss_pred eEeeccCCcccCCCC-CCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccc
Q 006778 186 FWFLTKDRAFSLPSP-FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (631)
Q Consensus 186 ~~~l~~~~~~~~p~~-~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~ 264 (631)
..+......+.+... ......+.+++..+.+.|.+.+++.|++++++++++++..++++ + .|.+.+ .+|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~----~~g---- 142 (493)
T PRK08244 73 GHFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDG-V-EVVVRG----PDG---- 142 (493)
T ss_pred eEEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe-E-EEEEEe----CCc----
Confidence 111111111222111 11122467899999999999999899999999999999877654 3 344432 112
Q ss_pred cccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceE
Q 006778 265 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGS 344 (631)
Q Consensus 265 ~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~~~~G~~ 344 (631)
..+++||+||+|||.+|.+++++ ++... ...... .++.....+.. ...+.....+ ... |..
T Consensus 143 ----~~~i~a~~vVgADG~~S~vR~~l----gi~~~-g~~~~~--~~~~~~~~~~~--~~~~~~~~~~----~~~--g~~ 203 (493)
T PRK08244 143 ----LRTLTSSYVVGADGAGSIVRKQA----GIAFP-GTDATF--TAMLGDVVLKD--PPPSSVLSLC----TRE--GGV 203 (493)
T ss_pred ----cEEEEeCEEEECCCCChHHHHhc----CCCcc-CCCcce--EEEEEEEEecC--CCCcceeEEE----eCC--ceE
Confidence 15799999999999999988764 54421 111111 11211111211 1122222222 111 446
Q ss_pred EEEEeCCCeEEEEEEEcCCCCCC---CCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcccCCCEEEEc
Q 006778 345 FLYHMNDRQIALGLVVALNYHNP---FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIG 421 (631)
Q Consensus 345 ~~~~~~~~~~~ig~~~~~d~~~~---~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~LiG 421 (631)
+++|.+++...+.+........+ .....+..+.+.... ...+...... +.. .++ ......++|..+|++|+|
T Consensus 204 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~-~~~-~~~-~~~~~a~~~~~gRv~L~G 278 (493)
T PRK08244 204 MIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRIC--GTDFGLNDPV-WMS-RFG-NATRQAERYRSGRIFLAG 278 (493)
T ss_pred EEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhh--CCCCCcCCee-EEE-ecc-cceeeHhhhccCcEEEee
Confidence 88999888877765433211111 112222222222110 0001100111 100 000 001133577789999999
Q ss_pred cCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC---CchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 422 CAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 422 DAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
||||.++|+.|||+|+||+||..||+.|...+.. ...|+.|+++|+.. ....+...+....++.
T Consensus 279 DAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~-~~~~~~~~~~~~~~~~ 345 (493)
T PRK08244 279 DAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPV-GTALLRNTEVQTKLFD 345 (493)
T ss_pred cceeccCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHH-HHHHHHHhHHHHHHhc
Confidence 9999999999999999999999999999887643 46799999988863 5555555454444543
No 16
>PRK06753 hypothetical protein; Provisional
Probab=99.96 E-value=3.2e-27 Score=252.95 Aligned_cols=331 Identities=17% Similarity=0.155 Sum_probs=202.2
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceEe
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (631)
||+||||||+||++|+.|++. |++|+|+||.+.+.. ...|..+.+..+..+ ..+...............+.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~------g~~v~v~E~~~~~~~-~g~gi~l~~~~~~~L-~~~gl~~~~~~~~~~~~~~~~ 73 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ------GHEVKVFEKNESVKE-VGAGIGIGDNVIKKL-GNHDLAKGIKNAGQILSTMNL 73 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCcccc-cccceeeChHHHHHH-HhcChHHHHHhcCCcccceeE
Confidence 799999999999999999999 999999999987543 234556666665332 222111000000111122233
Q ss_pred eccCCcc-c-CCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 189 LTKDRAF-S-LPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 189 l~~~~~~-~-~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
.+..... . ++. ......+.++|..|.+.|.+.+. +.+|+++++|+++..++ +.+ .|++.+
T Consensus 74 ~~~~g~~~~~~~~-~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~v-~v~~~~------------- 135 (373)
T PRK06753 74 LDDKGTLLNKVKL-KSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENET-DKV-TIHFAD------------- 135 (373)
T ss_pred EcCCCCEEeeccc-ccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecC-CcE-EEEECC-------------
Confidence 3221111 1 111 11123577999999999998875 36899999999998765 334 466665
Q ss_pred cCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceee-EEEEEEeecCCC-CCCCcEEEEeccCCCCCCcceE
Q 006778 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYAL-GIKEVWEIDEGK-HNPGEILHTLGWPLDQKTYGGS 344 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~-g~~~~~~~~~~~-~~~g~~~h~~~~~~~~~~~G~~ 344 (631)
|.++.+|+||+|||.+|.+|+.+. ... .....+. .+.. .++... .......+.++ .. |..
T Consensus 136 --g~~~~~~~vigadG~~S~vR~~~~----~~~----~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~----~~--g~~ 197 (373)
T PRK06753 136 --GESEAFDLCIGADGIHSKVRQSVN----ADS----KVRYQGYTCFRG--LIDDIDLKLPDCAKEYWG----TK--GRF 197 (373)
T ss_pred --CCEEecCEEEECCCcchHHHHHhC----CCC----CceEcceEEEEE--EeccccccCccceEEEEc----CC--CEE
Confidence 678999999999999999999762 221 1111111 1111 112111 11122222221 11 346
Q ss_pred EEEEeCCCeEEEEEEEcCCCCCCCCC---cHHHHHHhhc-CcchhccccCCceeeecceeeccCCcccCCcccCCCEEEE
Q 006778 345 FLYHMNDRQIALGLVVALNYHNPFLN---PYEEFQKFKH-HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAII 420 (631)
Q Consensus 345 ~~~~~~~~~~~ig~~~~~d~~~~~~~---~~~~~~~~~~-~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~Li 420 (631)
+++|..++.+.+.+....+...+... ..+..+.++. .+.++++++....... ...+.......++|..+|++||
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~rv~Li 275 (373)
T PRK06753 198 GIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQSETGI--LHHDIYDLKPLKSFVYGRIVLL 275 (373)
T ss_pred EEEEcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCCcccc--eeeccccccccccccCCCEEEE
Confidence 78898888777666543321111111 1122223332 3445555542211100 0011112234567888999999
Q ss_pred ccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHhHHHHHHHHHhccchhhhh
Q 006778 421 GCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFEY 487 (631)
Q Consensus 421 GDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~~ 487 (631)
|||||.|+|+.|||+|+||+||..|+++|... ...++|+.|++.|+.+ ..+.++.++.+.++++.
T Consensus 276 GDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~~-~~~~al~~Y~~~r~~~-~~~~~~~s~~~~~~~~~ 340 (373)
T PRK06753 276 GDAAHATTPNMGQGAGQAMEDAIVLANCLNAY-DFEKALQRYDKIRVKH-TAKVIKRSRKIGKIAQI 340 (373)
T ss_pred ecccccCCCCcCccHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhHH-HHHHHHHHHHHhHHHhc
Confidence 99999999999999999999999999998542 2257899999999976 88889999988888753
No 17
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.96 E-value=4.7e-27 Score=253.78 Aligned_cols=338 Identities=17% Similarity=0.167 Sum_probs=204.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (631)
+..||+||||||+||++|+.|++. |++|+|+||.+.++. ...|..+.+.++. ++..+.............+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~------g~~v~v~Er~~~~~~-~g~gi~l~~~~~~-~l~~lg~~~~~~~~~~~~~~ 74 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ------GIKVKLLEQAAEIGE-IGAGIQLGPNAFS-ALDALGVGEAARQRAVFTDH 74 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC------CCcEEEEeeCccccc-ccceeeeCchHHH-HHHHcCChHHHHhhccCCcc
Confidence 468999999999999999999999 999999999987653 2234556666553 33333221110011111122
Q ss_pred eEeecc--CCc---ccCCCCC---CCCCcEEEeHHHHHHHHHHHHHhcC-cEEecCceEEEEEEcCCCcEEEEEeCCCcc
Q 006778 186 FWFLTK--DRA---FSLPSPF---SNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (631)
Q Consensus 186 ~~~l~~--~~~---~~~p~~~---~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~gV~~~d~g~ 256 (631)
+.+.+. ... +..+... .....+.++|..|.+.|.+.+.+.+ ++++++++++++..+++ .+ .|.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~v-~v~~~~--- 149 (396)
T PRK08163 75 LTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD-GV-TVFDQQ--- 149 (396)
T ss_pred eEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC-ce-EEEEcC---
Confidence 222221 000 1111000 0112457899999999999998775 99999999999987654 34 366555
Q ss_pred ccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCC--CCCCCcEEEEecc
Q 006778 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEG--KHNPGEILHTLGW 334 (631)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~g~~~h~~~~ 334 (631)
|.++.||+||+|||.+|.+|+.+. +... ..... ..+......... ....+....+.+
T Consensus 150 ------------g~~~~ad~vV~AdG~~S~~r~~~~---g~~~--~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~g- 208 (396)
T PRK08163 150 ------------GNRWTGDALIGCDGVKSVVRQSLV---GDAP--RVTGH---VVYRAVIDVDDMPEDLRINAPVLWAG- 208 (396)
T ss_pred ------------CCEEecCEEEECCCcChHHHhhcc---CCCC--Ccccc---EEEEEEEeHHHCcchhccCccEEEEc-
Confidence 678999999999999999988652 2221 11111 122222221110 001111111111
Q ss_pred CCCCCCcceEEEEEeCCCe-EEEEEEEcCCCCC----CCCCcHHHHHHhh-cCcchhccccCCceeeecceeeccCCccc
Q 006778 335 PLDQKTYGGSFLYHMNDRQ-IALGLVVALNYHN----PFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQS 408 (631)
Q Consensus 335 ~~~~~~~G~~~~~~~~~~~-~~ig~~~~~d~~~----~~~~~~~~~~~~~-~~p~i~~~l~~~~~~~~~~~~i~~gg~~~ 408 (631)
. .+..+.||..++. +.+.+....+... ......+..+.|. .+|.+.++++....... ..+ .....
T Consensus 209 ---~--~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~ 279 (396)
T PRK08163 209 ---P--HCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPTSWKR--WAT--ADREP 279 (396)
T ss_pred ---C--CceEEEEEecCCeEEEEEEEECCCCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCCceeE--ccc--cCCCc
Confidence 1 1335678876654 3443333222111 1112223334443 35666666653322210 011 11124
Q ss_pred CCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC-CchHHHHHHHHHHhHHHHHHHHHhccchhhhh
Q 006778 409 IPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFEY 487 (631)
Q Consensus 409 ~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~-~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~~ 487 (631)
+++|..+|++|+|||||.|+|+.|||+|+||+||..||++|...... ..+|+.|++.|+.+ ..+.+..++.+..+++.
T Consensus 280 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~al~~y~~~R~~r-~~~~~~~s~~~~~~~~~ 358 (396)
T PRK08163 280 VAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGCDGDAEAAFALYESVRIPR-TARVVLSAREMGRIYHA 358 (396)
T ss_pred ccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhhCC
Confidence 56788899999999999999999999999999999999999753222 46799999999976 88888888888877753
No 18
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.96 E-value=2.7e-27 Score=256.24 Aligned_cols=337 Identities=17% Similarity=0.136 Sum_probs=194.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCc-cccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH-IISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~-~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
|||+||||||+||++|+.|++. ++|++|+|+||.+..... ...+..+.+.++ +++..+...+...........+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~----g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~-~~l~~lGl~~~~~~~~~~~~~~ 76 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQA----APHLPVTVVDAAPAGAWSRDPRASAIAAAAR-RMLEALGVWDEIAPEAQPITDM 76 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcC----CCCCEEEEEeCCCcccCCCCcceEEecHHHH-HHHHHCCChhhhhhhcCcccEE
Confidence 7999999999999999999998 224999999998753221 134666777654 2333322111100001111122
Q ss_pred EeeccCC-------cccCCCCC--CCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccc
Q 006778 187 WFLTKDR-------AFSLPSPF--SNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (631)
Q Consensus 187 ~~l~~~~-------~~~~p~~~--~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~ 257 (631)
.+.+... .+.+.... .....+.+++..+.+.|.+.+.+.|++++++++|+++..+++ .+ .|.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~---- 150 (403)
T PRK07333 77 VITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDE-GV-TVTLSD---- 150 (403)
T ss_pred EEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-EE-EEEECC----
Confidence 2221110 01111100 111246789999999999999999999999999999987664 33 466655
Q ss_pred cCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCC
Q 006778 258 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLD 337 (631)
Q Consensus 258 ~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~ 337 (631)
|.++.||+||+|||.+|.+++.+ ++... ..... ..++.. .+.......+.....+.
T Consensus 151 -----------g~~~~ad~vI~AdG~~S~vr~~~----g~~~~-~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~---- 206 (403)
T PRK07333 151 -----------GSVLEARLLVAADGARSKLRELA----GIKTV-GWDYG--QSGIVC--TVEHERPHGGRAEEHFL---- 206 (403)
T ss_pred -----------CCEEEeCEEEEcCCCChHHHHHc----CCCcc-cccCC--CEEEEE--EEEcCCCCCCEEEEEeC----
Confidence 56899999999999999887754 55420 11111 112211 12111111222222221
Q ss_pred CCCcceEEEEEeCCCeEEEEEEEcCCCCCCC--CCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcccCC
Q 006778 338 QKTYGGSFLYHMNDRQIALGLVVALNYHNPF--LNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFP 415 (631)
Q Consensus 338 ~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~~--~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~ 415 (631)
.. |..+++|..++..++.+....+..... .......+.+.. .+...+....... ....++. .....++|..+
T Consensus 207 ~~--g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~g 280 (403)
T PRK07333 207 PA--GPFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQ--RFGHRLGELKVLG-KRRAFPL-GLTLARSFVAP 280 (403)
T ss_pred CC--CceEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHH--HhhhhcCceEecc-CccEeec-hhhhhhhccCC
Confidence 11 346788998888777654322100000 011111111111 0001111000000 0001111 12245678889
Q ss_pred CEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccC------CCchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 416 GGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH------EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 416 ~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~------~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
|++|||||||.++|+.|||+++||+||..||+.|...+. ...+|+.|++.|+.. ....+...+.+..+|.
T Consensus 281 rv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 356 (403)
T PRK07333 281 RFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFD-TVRMGVTTDVLNRLFS 356 (403)
T ss_pred CEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999987652 247799999877653 5555556666666664
No 19
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.96 E-value=4.9e-27 Score=253.10 Aligned_cols=340 Identities=16% Similarity=0.139 Sum_probs=190.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCC--CCccccccccChHhHHHHhhhhhhcCCCeeeeccCc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV--GAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~--g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (631)
.+||+||||||+||++|+.|++. |++|+|+||.+.. ... ..++.+.+.++ +++..+...+..........
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~-~~a~~l~~~~~-~~l~~lGl~~~l~~~~~~~~ 73 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA------GIDSVVLERRSREYVEGR-IRAGVLEQGTV-DLLREAGVGERMDREGLVHD 73 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc------CCCEEEEEcCCccccccc-cceeEECHhHH-HHHHHcCChHHHHhcCCccC
Confidence 58999999999999999999999 9999999999752 111 12344666655 33333332111111111112
Q ss_pred ceEeeccCC--cccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCc
Q 006778 185 KFWFLTKDR--AFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (631)
Q Consensus 185 ~~~~l~~~~--~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~ 262 (631)
.+.+..... .++++..........+++..+.+.|.+.+++.|++++++++++++...++..+ .|++.+ +|+
T Consensus 74 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~-~V~~~~-----~G~- 146 (392)
T PRK08243 74 GIELRFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRP-YVTYEK-----DGE- 146 (392)
T ss_pred cEEEEECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCce-EEEEEc-----CCe-
Confidence 222222111 11222111112234567888899999988888999999999999876222222 455421 232
Q ss_pred cccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEE-eecCCCCCCCcEEEEeccCCCCCCc
Q 006778 263 KENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVW-EIDEGKHNPGEILHTLGWPLDQKTY 341 (631)
Q Consensus 263 ~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~g~~~h~~~~~~~~~~~ 341 (631)
..+++||+||+|||.+|.+|+++ +... .......+..++..+. +.++ ......+ . ....
T Consensus 147 ------~~~i~ad~vVgADG~~S~vR~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~---~~~~-- 206 (392)
T PRK08243 147 ------EHRLDCDFIAGCDGFHGVSRASI----PAGA-LRTFERVYPFGWLGILAEAPP---VSDELIY-A---NHER-- 206 (392)
T ss_pred ------EEEEEeCEEEECCCCCCchhhhc----Ccch-hhceecccCceEEEEeCCCCC---CCCceEE-e---eCCC--
Confidence 25799999999999999999976 2221 0001111112222111 1111 1111111 1 1111
Q ss_pred ceEEEEEeCCCeEEEEEEEcCCCCCCCCCcHHHHHHhhc-Ccc--hhccccCCceeeecceeeccCCcccCCcccCCCEE
Q 006778 342 GGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH-HPA--IKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGA 418 (631)
Q Consensus 342 G~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~-~p~--i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~ 418 (631)
+..++++.+++...+.+........+...+....+.+.. .+. ...++. ....... ..+.. ....++|..+|++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~--~~~~~-~~~~~~~~~grvv 282 (392)
T PRK08243 207 GFALCSMRSPTRSRYYLQCPLDDKVEDWSDERFWDELRRRLPPEDAERLVT-GPSIEKS--IAPLR-SFVAEPMQYGRLF 282 (392)
T ss_pred ceEEEecCCCCcEEEEEEecCCCCcccCChhHHHHHHHHhcCccccccccc-Ccccccc--ceeee-eceeccceeCCEE
Confidence 224444444444444443332111111111111122211 110 111111 1111100 01111 1123467789999
Q ss_pred EEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC--CchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 419 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 419 LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~--~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
|||||||.++|+.|||+|+||+||..||+.|.+.+.. ..+|+.|++.++.+ +.+.++.++.+..+++
T Consensus 283 LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~L~~Ye~~r~~r-~~~~~~~~~~~~~~~~ 351 (392)
T PRK08243 283 LAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREGDTALLDAYSATALRR-VWKAERFSWWMTSMLH 351 (392)
T ss_pred EEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999886543 47899999999966 7777777777777765
No 20
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.96 E-value=3.2e-27 Score=255.75 Aligned_cols=336 Identities=12% Similarity=0.100 Sum_probs=195.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCc-------cccccccChHhHHHHhhhhhhcCCCee
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH-------IISGNVFEPRALNELLPQWKQEEAPIR 178 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~-------~~~g~~i~~~~l~~l~~~~~~~~~~~~ 178 (631)
|.+||+||||||+||++|+.|++. |++|+|+|+.+..... ...+..+.+.++ +++..++.......
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~-~~L~~lGl~~~l~~ 73 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGS------GLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQ-RILERLGAWDGIAA 73 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcC------CCEEEEEcCCCccccccccCCCCCccchhhhHHHH-HHHHHCChhhhhhH
Confidence 358999999999999999999999 9999999998631110 112344555544 23333221111000
Q ss_pred e-eccCcceEeeccCC--cccCCCC--CCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCC
Q 006778 179 V-PVSSDKFWFLTKDR--AFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (631)
Q Consensus 179 ~-~~~~~~~~~l~~~~--~~~~p~~--~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d 253 (631)
. ......+.+.+... .+.+... .....++.+.+..+.+.|.+.+.+.|++++++++++++..++++ + .|.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~ 151 (405)
T PRK05714 74 RRASPYSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD-W-LLTLAD 151 (405)
T ss_pred hhCccceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECC
Confidence 0 01112222222211 1122111 01122578999999999999998889999999999999877654 3 466655
Q ss_pred CccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEec
Q 006778 254 MGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLG 333 (631)
Q Consensus 254 ~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~ 333 (631)
|.+++||+||+|||.+|.+|+.+ ++.. ...... ...+......+ .......+..+
T Consensus 152 ---------------g~~~~a~~vVgAdG~~S~vR~~l----g~~~--~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~- 206 (405)
T PRK05714 152 ---------------GRQLRAPLVVAADGANSAVRRLA----GCAT--REWDYL-HHAIVTSVRCS--EPHRATAWQRF- 206 (405)
T ss_pred ---------------CCEEEeCEEEEecCCCchhHHhc----CCCc--ccccCC-ceEEEEEEEcC--CCCCCEEEEEc-
Confidence 67899999999999999998865 4442 111111 11111111111 11122112111
Q ss_pred cCCCCCCcceEEEEEeCCC----eEEEEEEEcCCCCCCCC-CcHHHH-HHhhc--CcchhccccCCceeeecceeeccCC
Q 006778 334 WPLDQKTYGGSFLYHMNDR----QIALGLVVALNYHNPFL-NPYEEF-QKFKH--HPAIKPLLEGGTVVQYGARTLNEGG 405 (631)
Q Consensus 334 ~~~~~~~~G~~~~~~~~~~----~~~ig~~~~~d~~~~~~-~~~~~~-~~~~~--~p~i~~~l~~~~~~~~~~~~i~~gg 405 (631)
. .. |..+++|+.++ ...+.+....+...... ...+.+ +.+.. .+.+.+++....... ++. .
T Consensus 207 ~--~~---g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~l-~ 275 (405)
T PRK05714 207 T--DD---GPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLSADPRLC-----VPL-R 275 (405)
T ss_pred C--CC---CCeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCceecCCccE-----Eec-c
Confidence 1 11 33567887532 23444443221100000 011111 11211 011222222111111 111 1
Q ss_pred cccCCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccC------CCchHHHHHHHHHHhHHHHHHHHHh
Q 006778 406 LQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH------EDSNMEIYWDTLQKSWVWQELQRAR 479 (631)
Q Consensus 406 ~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~------~~~~l~~Y~~~~~~~~~~~~l~~~r 479 (631)
....++|..+|++|+|||||.++|+.|||+|+||+||..||+.|.+... ...+|+.|++.|+.+ ..+.+..++
T Consensus 276 ~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~ 354 (405)
T PRK05714 276 QRHAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPH-NLALMAAME 354 (405)
T ss_pred eeehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 1235688999999999999999999999999999999999999976432 135799999999876 888888888
Q ss_pred ccchhhhh
Q 006778 480 NYRPAFEY 487 (631)
Q Consensus 480 ~~~~~~~~ 487 (631)
.+..+|+.
T Consensus 355 ~~~~~~~~ 362 (405)
T PRK05714 355 GFERLFQA 362 (405)
T ss_pred HHHHHHCC
Confidence 87777753
No 21
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.96 E-value=4.8e-27 Score=253.32 Aligned_cols=321 Identities=16% Similarity=0.115 Sum_probs=186.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc----cccccChHhHHHHhhhhhhcCCCee-ee
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII----SGNVFEPRALNELLPQWKQEEAPIR-VP 180 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~----~g~~i~~~~l~~l~~~~~~~~~~~~-~~ 180 (631)
+.+||+||||||+|+++|+.|++. |++|+||||.+....... ....+.+..+ +++..++....... ..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~------G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~-~~l~~lGl~~~~~~~~~ 77 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADA------GLSVALVEGREPPRWQADQPDLRVYAFAADNA-ALLDRLGVWPAVRAARA 77 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC------CCEEEEEeCCCCcccccCCCCCEEEEecHHHH-HHHHHCCchhhhhHhhC
Confidence 468999999999999999999999 999999999875432111 1123555544 22332221111000 00
Q ss_pred ccCcceEeecc--CCcccCCCC--CCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCcc
Q 006778 181 VSSDKFWFLTK--DRAFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (631)
Q Consensus 181 ~~~~~~~~l~~--~~~~~~p~~--~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~ 256 (631)
.....+.+.+. ...+.++.. ....-.|++++..|.+.|.+.+++.|++++++++|+++..+++ .+ .|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~-~v-~v~~~~--- 152 (392)
T PRK08773 78 QPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDAD-RV-RLRLDD--- 152 (392)
T ss_pred CcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCC-eE-EEEECC---
Confidence 11112222211 111222211 1112258899999999999999999999999999999987664 33 466655
Q ss_pred ccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006778 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (631)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~ 336 (631)
|.+++||+||+|||.+|.+++.+ ++... .. .....++... +.......+.....+.
T Consensus 153 ------------g~~~~a~~vV~AdG~~S~vr~~~----g~~~~-~~--~~~~~~~~~~--v~~~~~~~~~~~~~~~--- 208 (392)
T PRK08773 153 ------------GRRLEAALAIAADGAASTLRELA----GLPVS-RH--DYAQRGVVAF--VDTEHPHQATAWQRFL--- 208 (392)
T ss_pred ------------CCEEEeCEEEEecCCCchHHHhh----cCCce-EE--EeccEEEEEE--EEccCCCCCEEEEEeC---
Confidence 56899999999999999887754 54421 00 1111222221 2221112222222221
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEcCCCCCC--CCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcccC
Q 006778 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 414 (631)
Q Consensus 337 ~~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~--~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~ 414 (631)
.. |...++|.+++...+.+....+.... .....+..+.+.. .+...+...+.... ...++. .....++|..
T Consensus 209 ~~---g~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~-~~~~~l-~~~~~~~~~~ 281 (392)
T PRK08773 209 PT---GPLALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQ--AFAARLGEVRVASP-RTAFPL-RRQLVQQYVS 281 (392)
T ss_pred CC---CcEEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhhcCeEecCC-ccEeec-hhhhhhhhcC
Confidence 11 33568898888777776653211000 0111111111110 11111111000000 001111 1123457888
Q ss_pred CCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC------CchHHHHHHHHHHh
Q 006778 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKS 469 (631)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~------~~~l~~Y~~~~~~~ 469 (631)
+|++|+|||||.++|+.|||+|+||+||..||+.|.+.+.. ...|++|++.|+..
T Consensus 282 ~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~ 342 (392)
T PRK08773 282 GRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSD 342 (392)
T ss_pred CcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876532 26799999998865
No 22
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.96 E-value=7.8e-27 Score=250.89 Aligned_cols=334 Identities=17% Similarity=0.132 Sum_probs=202.0
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc----ccccccChHhHHHHhhhhhhcCCCee-eeccC
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI----ISGNVFEPRALNELLPQWKQEEAPIR-VPVSS 183 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~----~~g~~i~~~~l~~l~~~~~~~~~~~~-~~~~~ 183 (631)
||+|||||||||++|+.|++. |++|+|+||.+..+... ..+..+.+.++. .+..+...+.... .....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~------G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~-~l~~lGl~~~~~~~~~~~~ 73 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS------GLKIALIEATPAEAAATPGFDNRVSALSAASIR-LLEKLGVWDKIEPDRAQPI 73 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC------CCEEEEEeCCCccccCCCCCCcceeecCHHHHH-HHHHCCchhhhhhhcCCCc
Confidence 799999999999999999999 99999999998654221 123456665543 2222221111111 11112
Q ss_pred cceEeeccCC--cccCCCC--CCCCCcEEEeHHHHHHHHHHHHHhcC-cEEecCceEEEEEEcCCCcEEEEEeCCCcccc
Q 006778 184 DKFWFLTKDR--AFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (631)
Q Consensus 184 ~~~~~l~~~~--~~~~p~~--~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~ 258 (631)
..+.+..... .+.++.. ......+.+++..+.+.|.+.+.+.| ++|+++++|+++..+++ .+ .|.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~~-~v~~~~----- 146 (385)
T TIGR01988 74 RDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD-HV-ELTLDD----- 146 (385)
T ss_pred eEEEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-ee-EEEECC-----
Confidence 2222222221 1222211 11223688999999999999999988 99999999999987663 34 466655
Q ss_pred CCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCC
Q 006778 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (631)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~ 338 (631)
|.++.+|+||+|+|.+|.+++++ +++.. .. .....++......+. .........+ ++ .
T Consensus 147 ----------g~~~~~~~vi~adG~~S~vr~~l----~~~~~-~~--~~~~~~~~~~~~~~~--~~~~~~~~~~-~~--~ 204 (385)
T TIGR01988 147 ----------GQQLRARLLVGADGANSKVRQLA----GIPTT-GW--DYGQSAVVANVKHER--PHQGTAWERF-TP--T 204 (385)
T ss_pred ----------CCEEEeeEEEEeCCCCCHHHHHc----CCCcc-cc--ccCCeEEEEEEEecC--CCCCEEEEEe-cC--C
Confidence 66799999999999999988865 44321 11 111122222222221 1122211111 11 1
Q ss_pred CCcceEEEEEeCCCeEEEEEEEcCCCCC--CCCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcccCCC
Q 006778 339 KTYGGSFLYHMNDRQIALGLVVALNYHN--PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPG 416 (631)
Q Consensus 339 ~~~G~~~~~~~~~~~~~ig~~~~~d~~~--~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~ 416 (631)
|..+++|.+++...+.+........ ....+.+..+.+... +...+..... .......+. .....++|..+|
T Consensus 205 ---g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~ 277 (385)
T TIGR01988 205 ---GPLALLPLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRA--FGSRLGAITL-VGERHAFPL-SLTHAKRYVAPR 277 (385)
T ss_pred ---CCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHH--HhhhcCceEe-ccCcceeec-hhhhhhheecCc
Confidence 3367889998888887765331100 011222222222110 0111110000 000011111 112345788899
Q ss_pred EEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccC------CCchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 417 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH------EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 417 v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~------~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
++|+|||||.++|+.|||+++||+||..||+.|...+. ...+|+.|++.++.+ +...+..++.+..+|.
T Consensus 278 v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~-~~~~~~~~~~~~~~~~ 352 (385)
T TIGR01988 278 LALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFD-NAAMLGATDGLNRLFS 352 (385)
T ss_pred eEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999987643 146899999999875 7778888888888775
No 23
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.96 E-value=6.2e-27 Score=254.40 Aligned_cols=341 Identities=14% Similarity=0.129 Sum_probs=193.4
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc-ccccccChHhHHHHhhhhhhcCCCeeeeccC
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~-~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~ 183 (631)
...+||+|||||||||++|+.|++. |++|+|+||++...... ..+..+.+.++ +.+..++..+.........
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~g~~~~l~~~~~-~~L~~lGl~~~l~~~~~~~ 88 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDS------GLRIALIEAQPAEAAAAKGQAYALSLLSA-RIFEGIGVWEKILPQIGKF 88 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcC------CCEEEEEecCCccccCCCCcEEEechHHH-HHHHHCChhhhhHhhcCCc
Confidence 3468999999999999999999999 99999999998653221 22345666655 2333322111100001111
Q ss_pred cceEeeccCC--cccCCCC-C-CCCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCcccc
Q 006778 184 DKFWFLTKDR--AFSLPSP-F-SNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (631)
Q Consensus 184 ~~~~~l~~~~--~~~~p~~-~-~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~ 258 (631)
..+.+.+... ...++.. . .....+.+.+..+.+.|.+.+.+. |+++++++++++++.++++ + .|.+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~-~v~~~~----- 161 (415)
T PRK07364 89 RQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-A-TVTLEI----- 161 (415)
T ss_pred cEEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-e-EEEEcc-----
Confidence 1222222111 1112111 1 111235555567888999888775 7999999999999877644 3 355543
Q ss_pred CCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCC
Q 006778 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (631)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~ 338 (631)
+|+ ..+++||+||+|||.+|.+|+.+ ++.. .... .....+.. .+...........+.+ |+ .
T Consensus 162 ~~~-------~~~i~adlvIgADG~~S~vR~~~----~~~~-~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~-~~--~ 222 (415)
T PRK07364 162 EGK-------QQTLQSKLVVAADGARSPIRQAA----GIKT-KGWK--YWQSCVTA--TVKHEAPHNDIAYERF-WP--S 222 (415)
T ss_pred CCc-------ceEEeeeEEEEeCCCCchhHHHh----CCCc-eeec--CCCEEEEE--EEEccCCCCCEEEEEe-cC--C
Confidence 111 25799999999999999998865 4432 0111 11111221 2222111122222211 22 1
Q ss_pred CCcceEEEEEeCCCeEEEEEEEcCCC-CC-CCCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcccCCC
Q 006778 339 KTYGGSFLYHMNDRQIALGLVVALNY-HN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPG 416 (631)
Q Consensus 339 ~~~G~~~~~~~~~~~~~ig~~~~~d~-~~-~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~ 416 (631)
|..+++|.+++...+.+....+. .. ......+..+.+.. .+...+.....+.. ....+.. ....++|..+|
T Consensus 223 ---g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~r 295 (415)
T PRK07364 223 ---GPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQ--RYGDQLGKLELLGD-RFLFPVQ-LMQSDRYVQHR 295 (415)
T ss_pred ---CCeEEeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHH--HhhhhhcCceecCC-Cceecch-hhhhhhhcCCc
Confidence 33578899888777765532210 00 00111111122211 11111111011100 0011111 11345788899
Q ss_pred EEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccC---C---CchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 417 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH---E---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 417 v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~---~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
++|||||||.++|+.|||+++||+||..||++|...+. . ..+|++|++.++.. ....++.++.+..+|.
T Consensus 296 v~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~~ 370 (415)
T PRK07364 296 LALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRE-NWLILGFTDLLDRLFS 370 (415)
T ss_pred EEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999986542 1 26799999988754 5556666666666664
No 24
>PRK06847 hypothetical protein; Provisional
Probab=99.96 E-value=1.6e-26 Score=247.65 Aligned_cols=328 Identities=20% Similarity=0.171 Sum_probs=193.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHH-----hhhhhhcCCCeeeec
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL-----LPQWKQEEAPIRVPV 181 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l-----~~~~~~~~~~~~~~~ 181 (631)
..||+||||||+||++|+.|++. |++|+|+|+.+.... ...|..+.+..+..+ ++.+.....+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~------g~~v~v~E~~~~~~~-~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~----- 71 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA------GIAVDLVEIDPEWRV-YGAGITLQGNALRALRELGVLDECLEAGFG----- 71 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC------CCCEEEEecCCCCcc-CCceeeecHHHHHHHHHcCCHHHHHHhCCC-----
Confidence 57999999999999999999999 999999999876432 123445555554222 1111111111
Q ss_pred cCcceEeeccCCcc--cCCCC--C--CCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCc
Q 006778 182 SSDKFWFLTKDRAF--SLPSP--F--SNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (631)
Q Consensus 182 ~~~~~~~l~~~~~~--~~p~~--~--~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g 255 (631)
...+.+.+..... .++.. . .......+.|..+.+.|.+.+++.|++|+++++|+++..++++ + .|.+.+
T Consensus 72 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~-- 146 (375)
T PRK06847 72 -FDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG-V-TVTFSD-- 146 (375)
T ss_pred -ccceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-E-EEEEcC--
Confidence 1122222211110 11110 0 0122456889999999999999899999999999999876543 3 466655
Q ss_pred cccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccC
Q 006778 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (631)
Q Consensus 256 ~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~ 335 (631)
|.++.+|+||+|||.+|.+++.+. +... .+...+..... ..++....... ...+.+
T Consensus 147 -------------g~~~~ad~vI~AdG~~s~~r~~l~---~~~~----~~~~~g~~~~~-~~~~~~~~~~~-~~~~~~-- 202 (375)
T PRK06847 147 -------------GTTGRYDLVVGADGLYSKVRSLVF---PDEP----EPEYTGQGVWR-AVLPRPAEVDR-SLMYLG-- 202 (375)
T ss_pred -------------CCEEEcCEEEECcCCCcchhhHhc---CCCC----CceeccceEEE-EEecCCCCccc-eEEEeC--
Confidence 678999999999999999988762 2221 12222222111 01222111111 111111
Q ss_pred CCCCCcceEEEEEeCCCeEEEEEEEcCCCCCCCCCcHH---HHH-HhhcC-c-chhccc---cCCceeeecceeeccCCc
Q 006778 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYE---EFQ-KFKHH-P-AIKPLL---EGGTVVQYGARTLNEGGL 406 (631)
Q Consensus 336 ~~~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~---~~~-~~~~~-p-~i~~~l---~~~~~~~~~~~~i~~gg~ 406 (631)
.+ +...++|..++...+.+..... ..+...... .+. .+... + .+..+. .....+.+ .+....
T Consensus 203 --~~--~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 273 (375)
T PRK06847 203 --PT--TKAGVVPLSEDLMYLFVTEPRP-DNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVY----RPLETL 273 (375)
T ss_pred --CC--cEEEEEcCCCCeEEEEEeccCc-ccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceee----ccHhhc
Confidence 11 2245667766655443332221 111222211 111 12221 2 222222 11111110 111111
Q ss_pred ccCCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHhHHHHHHHHHhccchhh
Q 006778 407 QSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (631)
Q Consensus 407 ~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (631)
...++|..+|++|||||||.++|+.|||+|+||+||..||+.|.+......+|+.|++.|+++ ....+..++.....+
T Consensus 274 ~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~~~~~~al~~Y~~~R~~r-~~~~~~~s~~~~~~~ 351 (375)
T PRK06847 274 LVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARHDSLEAALQAYYARRWER-CRMVVEASARIGRIE 351 (375)
T ss_pred cCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHH-HHHHHHHHHHhhhee
Confidence 123468889999999999999999999999999999999999976433357899999999876 788888888777665
No 25
>PRK07588 hypothetical protein; Provisional
Probab=99.96 E-value=1.6e-26 Score=249.21 Aligned_cols=336 Identities=14% Similarity=0.042 Sum_probs=193.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
.||+||||||+||++|+.|++. |++|+|+||.+.... ...+..+.+.++ +++..+...............+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~-~g~~~~l~~~~~-~~l~~lGl~~~l~~~~~~~~~~~ 72 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY------GHEPTLIERAPELRT-GGYMVDFWGVGY-EVAKRMGITDQLREAGYQIEHVR 72 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCceEEEeCCCCccC-CCeEEeccCcHH-HHHHHcCCHHHHHhccCCccceE
Confidence 3799999999999999999999 999999999876432 111223333333 12222211000000001112222
Q ss_pred eeccCCc--ccCC--CCCCC--CCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCC
Q 006778 188 FLTKDRA--FSLP--SPFSN--RGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (631)
Q Consensus 188 ~l~~~~~--~~~p--~~~~~--~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~ 261 (631)
+.+.... ..++ ..... ...+.++|..|.+.|.+.+. .|++|+++++|++++.+++ .| .|.+.+
T Consensus 73 ~~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~-~v-~v~~~~-------- 141 (391)
T PRK07588 73 SVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRD-GV-RVTFER-------- 141 (391)
T ss_pred EEcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCC-eE-EEEECC--------
Confidence 2221111 0111 00111 12467999999999988664 4799999999999987764 34 466665
Q ss_pred ccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCc
Q 006778 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTY 341 (631)
Q Consensus 262 ~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~~~~ 341 (631)
|.++++|+||+|||.+|.+|+.+ ++... ......+..+. ...+.............+ . ..+
T Consensus 142 -------g~~~~~d~vIgADG~~S~vR~~~---~~~~~---~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~--~-~~g-- 202 (391)
T PRK07588 142 -------GTPRDFDLVIGADGLHSHVRRLV---FGPER---DFEHYLGCKVA-ACVVDGYRPRDERTYVLY--N-EVG-- 202 (391)
T ss_pred -------CCEEEeCEEEECCCCCccchhhc---cCCcc---ceEEEcCcEEE-EEEcCCCCCCCCceEEEE--e-CCC--
Confidence 67789999999999999999864 22221 00111111111 111111111112222111 1 111
Q ss_pred ceEEEEEeCCCeEEEEEEEcCCCCCCCCCcHHHHH----HhhcC-cchhc---cccCCceeeecceeeccCCcccCCccc
Q 006778 342 GGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQ----KFKHH-PAIKP---LLEGGTVVQYGARTLNEGGLQSIPYPV 413 (631)
Q Consensus 342 G~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~----~~~~~-p~i~~---~l~~~~~~~~~~~~i~~gg~~~~p~~~ 413 (631)
+...++|..++...+.+....+...+........+ .+... +.... .+....... ........+++|.
T Consensus 203 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~w~ 277 (391)
T PRK07588 203 RQVARVALRGDRTLFLFIFRAEHDNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLY-----FDVVSQIRMDRWS 277 (391)
T ss_pred CEEEEEecCCCCeEEEEEEEcCCccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchh-----eeeeeeeccCccc
Confidence 23567788777665555544332222222222212 22211 22222 222111111 0001112346788
Q ss_pred CCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccC-CCchHHHHHHHHHHhHHHHHHHHHhccchhhhh
Q 006778 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-EDSNMEIYWDTLQKSWVWQELQRARNYRPAFEY 487 (631)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~-~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~~ 487 (631)
.+|++|||||||.|+|+.|||+|+||+||..||+.|..... ...+|+.|++.|+.+ +...+..++.+..+|..
T Consensus 278 ~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~al~~Y~~~R~~~-~~~~~~~~~~~~~~~~~ 351 (391)
T PRK07588 278 RGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAGGDHRRAFDAYEKRLRPF-IAGKQAAAAKFLSVFAP 351 (391)
T ss_pred cCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH-HHHHHhhcccccccccC
Confidence 89999999999999999999999999999999999976432 246799999999976 78788888888887753
No 26
>PRK06185 hypothetical protein; Provisional
Probab=99.96 E-value=1.7e-26 Score=250.23 Aligned_cols=339 Identities=16% Similarity=0.184 Sum_probs=198.7
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHH--HHhhhhhhcCCCeeeecc
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALN--ELLPQWKQEEAPIRVPVS 182 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~--~l~~~~~~~~~~~~~~~~ 182 (631)
.+++||+||||||+|+++|+.|++. |++|+|||+.+.... ...+..+.+..+. +.+..|......... .
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~------G~~v~liE~~~~~~~-~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~--~ 74 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARA------GVDVTVLEKHADFLR-DFRGDTVHPSTLELMDELGLLERFLELPHQ--K 74 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCccCc-cccCceeChhHHHHHHHcCChhHHhhcccc--e
Confidence 4579999999999999999999999 999999999864322 1234556555432 112222221110000 0
Q ss_pred CcceEeeccCCc---ccCCCC-CCCCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCccc
Q 006778 183 SDKFWFLTKDRA---FSLPSP-FSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (631)
Q Consensus 183 ~~~~~~l~~~~~---~~~p~~-~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~ 257 (631)
...+.+...... +.+... ......+.+.+..+.+.|.+.+.+. |++++++++|+++..++ +.+.+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v~~~~---- 149 (407)
T PRK06185 75 VRTLRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGVRART---- 149 (407)
T ss_pred eeeEEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEc----
Confidence 111222111111 111110 1112256789999999999988775 89999999999998876 4565665542
Q ss_pred cCCCccccccCc-eEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006778 258 KDGSKKENFQRG-VELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (631)
Q Consensus 258 ~~G~~~~~f~~g-~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~ 336 (631)
.+ | .+++||+||+|||.+|.+++.+ ++..+.....+. .+ ...++.....++.....+
T Consensus 150 ~~---------g~~~i~a~~vI~AdG~~S~vr~~~----gi~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~---- 207 (407)
T PRK06185 150 PD---------GPGEIRADLVVGADGRHSRVRALA----GLEVREFGAPMD---VL--WFRLPREPDDPESLMGRF---- 207 (407)
T ss_pred CC---------CcEEEEeCEEEECCCCchHHHHHc----CCCccccCCCce---eE--EEecCCCCCCCcccceEe----
Confidence 11 3 4799999999999999888754 555311111111 11 112322111111122211
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEcCCCCCCCC-CcHHHH-HHhh-cCcchhccccCCceeeecceeeccCCcccCCccc
Q 006778 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHNPFL-NPYEEF-QKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 413 (631)
Q Consensus 337 ~~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~~~-~~~~~~-~~~~-~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~ 413 (631)
..+ |..+++|.. +..++++....+...... ...+.| +.+. ..|.+.+.+...+... ....++. .....+++.
T Consensus 208 ~~~--g~~~llP~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~-~~~~~~l-~~~~~~~~~ 282 (407)
T PRK06185 208 GPG--QGLIMIDRG-DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWD-DVKLLDV-RVDRLRRWH 282 (407)
T ss_pred cCC--cEEEEEcCC-CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCcc-ccEEEEE-ecccccccc
Confidence 111 345677876 678888877543221111 112222 2222 2455444443211111 0011111 122345788
Q ss_pred CCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC----CchHHHHHHHHHHhHHHHHHHHHhccchhh
Q 006778 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (631)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~----~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (631)
.+|++|+|||||.++|..|||+|+||+||..||+.|.+.+.. ...|+.|++.|+.. ....+.....+.++|
T Consensus 283 ~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~~~ 357 (407)
T PRK06185 283 RPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFP-TRVTQALQRRIQRRL 357 (407)
T ss_pred CCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhH-HHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999876533 26799999998865 554555555444444
No 27
>PRK05868 hypothetical protein; Validated
Probab=99.95 E-value=1.9e-26 Score=246.33 Aligned_cols=332 Identities=16% Similarity=0.110 Sum_probs=189.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceEe
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (631)
||+||||||+||++|+.|++. |++|+||||.+.... ...+..+.+.++ +.+..+...............+.+
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~------G~~v~viE~~~~~~~-~g~~i~~~~~a~-~~L~~lGl~~~~~~~~~~~~~~~~ 74 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRH------GYSVTMVERHPGLRP-GGQAIDVRGPAL-DVLERMGLLAAAQEHKTRIRGASF 74 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCC-CceeeeeCchHH-HHHHhcCCHHHHHhhccCccceEE
Confidence 899999999999999999999 999999999986542 112233444443 222222211000000111122222
Q ss_pred eccCCc-ccC-----CC-CCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCC
Q 006778 189 LTKDRA-FSL-----PS-PFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (631)
Q Consensus 189 l~~~~~-~~~-----p~-~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~ 261 (631)
.+.+.. +.. +. .......+.+.|..|.+.|.+.+ ..|++++++++|+++..+++ .| .|.+.|
T Consensus 75 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~-~v-~v~~~d-------- 143 (372)
T PRK05868 75 VDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDGD-SV-RVTFER-------- 143 (372)
T ss_pred EeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecCC-eE-EEEECC--------
Confidence 221111 000 00 00112246788999998876543 56899999999999987653 34 466665
Q ss_pred ccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEE-EEEEeecCCCCCCCcEEEEeccCCCCCC
Q 006778 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGI-KEVWEIDEGKHNPGEILHTLGWPLDQKT 340 (631)
Q Consensus 262 ~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~g~~~h~~~~~~~~~~ 340 (631)
|.+++||+||+|||.+|.+|+.+ ++... ......|. .....++... ..+.... |-+..+.
T Consensus 144 -------g~~~~adlvIgADG~~S~vR~~~---~~~~~-----~~~~~~g~~~~~~~~~~~~-~~~~~~~---~~~g~~~ 204 (372)
T PRK05868 144 -------AAAREFDLVIGADGLHSNVRRLV---FGPEE-----QFVKRLGTHAAIFTVPNFL-ELDYWQT---WHYGDST 204 (372)
T ss_pred -------CCeEEeCEEEECCCCCchHHHHh---cCCcc-----cceeecceEEEEEEcCCCC-CCCcceE---EEecCCc
Confidence 67899999999999999999976 23221 11111222 1222333221 1111111 1111221
Q ss_pred cceEEEEEeCCC-eEEEEEEEcCC-CC-CCCCC--cHHHH-HHhhcC----cchhccccCCceeeecceeeccCCcccCC
Q 006778 341 YGGSFLYHMNDR-QIALGLVVALN-YH-NPFLN--PYEEF-QKFKHH----PAIKPLLEGGTVVQYGARTLNEGGLQSIP 410 (631)
Q Consensus 341 ~G~~~~~~~~~~-~~~ig~~~~~d-~~-~~~~~--~~~~~-~~~~~~----p~i~~~l~~~~~~~~~~~~i~~gg~~~~p 410 (631)
. ..+||..++ .....+....+ .. +.... ..+++ +.|... +.+.+.+....... .+......++
T Consensus 205 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~-----~~~~~~~~~~ 277 (372)
T PRK05868 205 M--AGVYSARNNTEARAALAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFY-----FDEMSQILMD 277 (372)
T ss_pred E--EEEEecCCCCceEEEEEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCcee-----eccceEEecC
Confidence 1 345666543 32333322211 00 00000 01111 233211 22333333222111 1111122457
Q ss_pred cccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccC-CCchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 411 YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 411 ~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~-~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
+|+.+|++|||||||.+.|+.|||+++||+||..||++|..... ...+|+.||+.+|.. +.+..+..+.....|.
T Consensus 278 ~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~~~~~~~al~~ye~~~~~~-~~~~q~~~~~~~~~~~ 353 (372)
T PRK05868 278 RWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAAGDDYQLGFANYHAEFHGF-VERNQWLVSDNIPGGA 353 (372)
T ss_pred CCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhHH-HHHhhhhhhccCCccc
Confidence 89999999999999999999999999999999999999976432 257899999999864 7777777888777774
No 28
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.95 E-value=2.6e-26 Score=257.08 Aligned_cols=340 Identities=15% Similarity=0.091 Sum_probs=198.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (631)
+.+||+||||||+||++|+.|++. |++|+||||.+.+... ..+..+.++.+ +++..+...+...........
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~------G~~v~v~Er~~~~~~~-~ra~~l~~~~~-~~L~~lGl~~~l~~~~~~~~~ 80 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQY------GVRVLVLERWPTLYDL-PRAVGIDDEAL-RVLQAIGLADEVLPHTTPNHG 80 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCC-CceeeeCHHHH-HHHHHcCChhHHHhhcccCCc
Confidence 468999999999999999999999 9999999999865432 23455666655 233222211111111111122
Q ss_pred eEeeccCCc--ccCCC-CCC---CCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCcccc
Q 006778 186 FWFLTKDRA--FSLPS-PFS---NRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (631)
Q Consensus 186 ~~~l~~~~~--~~~p~-~~~---~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~ 258 (631)
+.+.+.... ..++. ... ....+.+.+..+.+.|.+.+.+. |++|+++++|++++.++++ | .|++.+ .
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~-v-~v~~~~----~ 154 (538)
T PRK06183 81 MRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG-V-TVTLTD----A 154 (538)
T ss_pred eEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe-E-EEEEEc----C
Confidence 223221111 11110 000 11235678899999999998875 8999999999999988755 3 355543 2
Q ss_pred CCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCC
Q 006778 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (631)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~ 338 (631)
+|+ ..+++||+||+|||.+|.+|+.+ ++... ........+.+. + .+.............+ . .
T Consensus 155 ~G~-------~~~i~ad~vVgADG~~S~vR~~l----g~~~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~-~---~ 216 (538)
T PRK06183 155 DGQ-------RETVRARYVVGCDGANSFVRRTL----GVPFE-DLTFPERWLVVD-V-LIANDPLGGPHTYQYC-D---P 216 (538)
T ss_pred CCC-------EEEEEEEEEEecCCCchhHHHHc----CCeee-CCCccceEEEEE-E-ecccCccCCCceEEEE-C---C
Confidence 343 26899999999999999999876 44421 111111111111 0 1111111111111111 1 1
Q ss_pred CCcceEEEEEeCCCeEEEEEEEcCCCCCCCCCcHHHHH-HhhcCcchhccccCCceeeecceeeccCCcccCCcccCCCE
Q 006778 339 KTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQ-KFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (631)
Q Consensus 339 ~~~G~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~-~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v 417 (631)
. +...+++..++...+.+....+.........+.+. .++.... .....+.+... .........++|..+|+
T Consensus 217 ~--~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~---~~~~~~~~a~~~~~gRv 288 (538)
T PRK06183 217 A--RPYTSVRLPHGRRRWEFMLLPGETEEQLASPENVWRLLAPWGP---TPDDAELIRHA---VYTFHARVADRWRSGRV 288 (538)
T ss_pred C--CCEEEEEcCCCeEEEEEEeCCCCChhhcCCHHHHHHHHHhhCC---CCcceEEEEEE---eeeEccEEhhhhccCCE
Confidence 1 22456777777666655543221111111122222 2221100 00000111100 00001112357888999
Q ss_pred EEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC---CchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 418 ~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
+|+|||||.++|+.|||+|+||+||..||+.|...+.. ...|+.|+++|+.. +.+.++.++.+..++.
T Consensus 289 ~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~-~~~~~~~s~~~~~~~~ 359 (538)
T PRK06183 289 LLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPH-ARAMIDLAVRLGRVIC 359 (538)
T ss_pred EEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999865433 46899999999975 8888888888777774
No 29
>PRK09126 hypothetical protein; Provisional
Probab=99.95 E-value=7.8e-27 Score=251.70 Aligned_cols=336 Identities=18% Similarity=0.149 Sum_probs=197.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCC--ccccc--cccChHhHHHHhhhhhhcCCCeeee-
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA--HIISG--NVFEPRALNELLPQWKQEEAPIRVP- 180 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~--~~~~g--~~i~~~~l~~l~~~~~~~~~~~~~~- 180 (631)
|++||+||||||+||++|+.|++. |++|+|+||.+.... ....| ..+.+..+ +++..++..+......
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~-~~L~~lGl~~~~~~~~~ 74 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGS------GLKVTLIERQPLAALADPAFDGREIALTHASR-EILQRLGAWDRIPEDEI 74 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC------CCcEEEEeCCCcccccCCCCchhHHHhhHHHH-HHHHHCCChhhhccccC
Confidence 479999999999999999999999 999999999876421 11122 23444443 3333333211111100
Q ss_pred ccCcceEeeccCC--cccCCCCC--CCCCcEEEeHHHHHHHHHHHHHh-cCcEEecCceEEEEEEcCCCcEEEEEeCCCc
Q 006778 181 VSSDKFWFLTKDR--AFSLPSPF--SNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (631)
Q Consensus 181 ~~~~~~~~l~~~~--~~~~p~~~--~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g 255 (631)
.....+.+.+... .+.++... ....++.+++..+.+.|.+.+.+ .|++|+++++|+++..+++ .+ .|.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~-~~-~v~~~~-- 150 (392)
T PRK09126 75 SPLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDD-GA-QVTLAN-- 150 (392)
T ss_pred CccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC-eE-EEEEcC--
Confidence 1112222222111 12222111 11225778999999999888754 6899999999999987654 33 466655
Q ss_pred cccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccC
Q 006778 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (631)
Q Consensus 256 ~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~ 335 (631)
|.+++||+||+|||.+|.+++.+ ++.............+ .+.......+...++++
T Consensus 151 -------------g~~~~a~~vI~AdG~~S~vr~~~----g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-- 206 (392)
T PRK09126 151 -------------GRRLTARLLVAADSRFSATRRQL----GIGADMHDFGRTMLVC-----RMRHELPHHHTAWEWFG-- 206 (392)
T ss_pred -------------CCEEEeCEEEEeCCCCchhhHhc----CCCccccccCCeEEEE-----EEeccCCCCCEEEEEec--
Confidence 67899999999999999998865 4432111111111111 12111111222233322
Q ss_pred CCCCCcceEEEEEeCCCeEEEEEEEcCCCCCC--CCCcHHHH-HHhhcCcchhccccCCceeeecceeeccCCcccCCcc
Q 006778 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEF-QKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (631)
Q Consensus 336 ~~~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~--~~~~~~~~-~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~ 412 (631)
.+ +..+++|..++...+++....+.... ... .+.+ +.+.. .+...+....... .....+... ...++|
T Consensus 207 --~~--~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~--~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~ 277 (392)
T PRK09126 207 --YG--QTLALLPLNGHLSSLVLTLPPDQIEALLALD-PEAFAAEVTA--RFKGRLGAMRLVS-SRHAYPLVA-VYAHRF 277 (392)
T ss_pred --CC--CCeEEeECCCCCEEEEEECCHHHHHHHHcCC-HHHHHHHHHH--HHhhhccCeEEcC-CCcEeechH-HHHHHH
Confidence 11 23578899888877776543221000 011 1111 11110 0111111101000 000011111 123578
Q ss_pred cCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccC---C---CchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 413 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH---E---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 413 ~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~---~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
..+|++|+|||||.++|+.|||+++||+||..||++|...+. + ..+|+.|++.|+.. ..+.+..++.+..+|.
T Consensus 278 ~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~-~~~~~~~~~~~~~~~~ 356 (392)
T PRK09126 278 VAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLA-TRPLYHATNAIAALYT 356 (392)
T ss_pred hhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
Confidence 889999999999999999999999999999999999987652 1 35799999999876 6777777777777764
No 30
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.95 E-value=2.4e-26 Score=250.96 Aligned_cols=341 Identities=16% Similarity=0.132 Sum_probs=198.2
Q ss_pred ccEEEECCCHHHHHHHHHHHh----hcccCCCCCeEEEEeeCCCCCCc-----------cccccccChHhHHHHhhhhhh
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQ----LCREKNVDLSVCVVEKGAEVGAH-----------IISGNVFEPRALNELLPQWKQ 172 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~----~~~~~~~G~~V~vlEk~~~~g~~-----------~~~g~~i~~~~l~~l~~~~~~ 172 (631)
|||+||||||+|+++|+.|++ . |++|+|||+.+..... ...+..+.+.++. ++..++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~------G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~-~L~~lG~ 73 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK------DLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASIS-FFKKIGA 73 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC------CCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHH-HHHHcCc
Confidence 699999999999999999998 7 9999999995432211 1124455665542 2222221
Q ss_pred cCCCeee-eccCcceEeeccCC--cccCCCCC-CCCCcEEEeHHHHHHHHHHHHHhcC---cEEecCceEEEEEEc----
Q 006778 173 EEAPIRV-PVSSDKFWFLTKDR--AFSLPSPF-SNRGNYVISLSQLVRWLGGKAEELG---VEIYPGFAASEILYD---- 241 (631)
Q Consensus 173 ~~~~~~~-~~~~~~~~~l~~~~--~~~~p~~~-~~~~~~~v~~~~l~~~L~~~a~~~G---v~i~~g~~v~~i~~~---- 241 (631)
....... ......+.+.+... .+.++... .....+++++..+.+.|.+.+++.+ ++++++++|+++..+
T Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~ 153 (437)
T TIGR01989 74 WDHIQSDRIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYP 153 (437)
T ss_pred hhhhhhhcCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccc
Confidence 1100000 01111222222211 12222111 1122678999999999999998865 999999999999753
Q ss_pred -CCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecC
Q 006778 242 -ADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDE 320 (631)
Q Consensus 242 -~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~ 320 (631)
+++..+.|++.+ |.+++||+||+|||.+|.+|+.+ ++... ...... .++........
T Consensus 154 ~~~~~~v~v~~~~---------------g~~i~a~llVgADG~~S~vR~~~----gi~~~-g~~y~q--~~~v~~v~~~~ 211 (437)
T TIGR01989 154 NDNSNWVHITLSD---------------GQVLYTKLLIGADGSNSNVRKAA----NIDTT-GWNYNQ--HAVVATLKLEE 211 (437)
T ss_pred cCCCCceEEEEcC---------------CCEEEeeEEEEecCCCChhHHHc----CCCcc-ceeecc--EEEEEEEEccc
Confidence 222223566665 67899999999999999999865 55531 111111 11111112211
Q ss_pred CCCCCCcEEEEeccCCCCCCcceEEEEEeCCCeEEEEEEEcCCCCCC--CCCcHHHHHHhhc--------Ccc-------
Q 006778 321 GKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQKFKH--------HPA------- 383 (631)
Q Consensus 321 ~~~~~g~~~h~~~~~~~~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~--~~~~~~~~~~~~~--------~p~------- 383 (631)
. ...+.....+ ... |...++|+.++..++.+......... .+.+.+..+.+.. .|.
T Consensus 212 ~-~~~~~~~~~f---~~~---g~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~ 284 (437)
T TIGR01989 212 A-TENDVAWQRF---LPT---GPIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYA 284 (437)
T ss_pred C-CCCCeEEEEE---CCC---CCEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccc
Confidence 1 1223333322 122 33567788888887776654321100 1111111111100 010
Q ss_pred hhccccC------Cc-----------e-eeecceeeccCCcccCCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHH
Q 006778 384 IKPLLEG------GT-----------V-VQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLA 445 (631)
Q Consensus 384 i~~~l~~------~~-----------~-~~~~~~~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~a 445 (631)
+.++++. ++ . .......++. .....++|..+|++|+|||||.++|..|||+|+||+||..|
T Consensus 285 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~L 363 (437)
T TIGR01989 285 MEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPL-GLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASL 363 (437)
T ss_pred cccccccccccccccccccccCchhheeecccceeEEe-cccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHH
Confidence 0000000 00 0 0000011111 22344678889999999999999999999999999999999
Q ss_pred HHHHhcccCC------CchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 446 AEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 446 A~~l~~~l~~------~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
|+.|.+.+.. ...|++|++.|+.. ....+...+.+..+|.
T Consensus 364 a~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~v~~~t~~l~~l~~ 409 (437)
T TIGR01989 364 VKALAEAVSVGADIGSISSLKPYERERYAK-NVVLLGLVDKLHKLYA 409 (437)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999876532 25799999999875 7777777777777775
No 31
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.95 E-value=1.7e-26 Score=248.12 Aligned_cols=331 Identities=18% Similarity=0.190 Sum_probs=194.5
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCC-CeEEEEeeCCCCCCcc---ccccccChHhHHHHhhhhhhcCCCeeeeccCc
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGAEVGAHI---ISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G-~~V~vlEk~~~~g~~~---~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (631)
||+||||||+|+++|+.|++. | ++|+|+||.+...... ..+..+.+.++. .+..++.............
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~------G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~-~l~~lgl~~~~~~~~~~~~ 73 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL------GKIKIALIEANSPSAAQPGFDARSLALSYGSKQ-ILEKLGLWPKLAPFATPIL 73 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC------CCceEEEEeCCCccccCCCCCCeeEeccHHHHH-HHHHCCChhhhHhhcCccc
Confidence 799999999999999999999 9 9999999987654321 123456665542 3333222111000011111
Q ss_pred ceEeeccC--CcccCCC--CCCCCCcEEEeHHHHHHHHHHHHHh-cCcEEecCceEEEEEEcCCCcEEEEEeCCCccccC
Q 006778 185 KFWFLTKD--RAFSLPS--PFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (631)
Q Consensus 185 ~~~~l~~~--~~~~~p~--~~~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~ 259 (631)
.+.+.... ....++. .......|.++|..|.+.|.+.+.+ .|++++++++|+++..++++ + .|.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-~v~~~~------ 145 (382)
T TIGR01984 74 DIHVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-V-RVTLDN------ 145 (382)
T ss_pred eEEEEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-E-EEEECC------
Confidence 22222111 1111110 0111225889999999999999988 49999999999999877643 3 466554
Q ss_pred CCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcce-eeEEEEEEeecCCCCCCCcEEEEeccCCCC
Q 006778 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTY-ALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (631)
Q Consensus 260 G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~ 338 (631)
|.+++||+||+|+|.+|.+++.+ ++.. ... .+ ...+........ .........+. .
T Consensus 146 ---------g~~~~ad~vV~AdG~~S~vr~~l----~~~~--~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~----~ 202 (382)
T TIGR01984 146 ---------GQQLRAKLLIAADGANSKVRELL----SIPT--EEH--DYNQTALIANIRHEQ--PHQGCAFERFT----P 202 (382)
T ss_pred ---------CCEEEeeEEEEecCCChHHHHHc----CCCC--ccc--ccCCEEEEEEEEecC--CCCCEEEEeeC----C
Confidence 56899999999999999887754 4442 111 12 122222222211 11222222221 1
Q ss_pred CCcceEEEEEeCCC-eEEEEEEEcCCCCCC--CCCcHHHHHHhhcC--cchhccccCCceeeecceeeccCCcccCCccc
Q 006778 339 KTYGGSFLYHMNDR-QIALGLVVALNYHNP--FLNPYEEFQKFKHH--PAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 413 (631)
Q Consensus 339 ~~~G~~~~~~~~~~-~~~ig~~~~~d~~~~--~~~~~~~~~~~~~~--p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~ 413 (631)
. |..+++|.+++ ...+.+....+.... .....+..+.+... +.+.++....... ..+.. ....++|.
T Consensus 203 ~--g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~ 274 (382)
T TIGR01984 203 H--GPLALLPLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAFGWRLGKITQVGERK-----TYPLK-LRIAETHV 274 (382)
T ss_pred C--CCeEECcCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCcc-----Eeecc-hhhhhhee
Confidence 1 23567888777 555555443211000 01111111222111 1111111101111 11111 11345788
Q ss_pred CCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC---CchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
.+|++|||||||.++|+.|||+++||+||..||++|...... ..+|+.|++.++.. ....++.++.+..+|.
T Consensus 275 ~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~-~~~~~~~~~~~~~~~~ 349 (382)
T TIGR01984 275 HPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFD-QFITIGLTDGLNRLFS 349 (382)
T ss_pred cCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 899999999999999999999999999999999999876422 46799999999865 6666667777777664
No 32
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.95 E-value=2.3e-26 Score=247.44 Aligned_cols=342 Identities=16% Similarity=0.118 Sum_probs=183.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCC-ccccccccChHhHHHHhhhhhhcCCCeeeeccCc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA-HIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~-~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (631)
|.+||+||||||+||++|+.|++. |++|+||||.+.... ....++.+.+.++ +++..+..............
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~a~~l~~~~~-~~L~~lGl~~~l~~~~~~~~ 73 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKA------GIDNVILERQSRDYVLGRIRAGVLEQGTV-DLLREAGVDERMDREGLVHE 73 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHC------CCCEEEEECCCCcccCCceeEeeECHHHH-HHHHHCCChHHHHhcCceec
Confidence 358999999999999999999999 999999999985211 1112334666544 22222221100000001111
Q ss_pred ceEeeccCCc--ccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeC-CCccccCCC
Q 006778 185 KFWFLTKDRA--FSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTN-DMGIAKDGS 261 (631)
Q Consensus 185 ~~~~l~~~~~--~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~-d~g~~~~G~ 261 (631)
.+.+...... +.++............+..+.+.|.+.+.+.|++++++.+++.+...++..+ .|++. + |+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~V~~~~~------g~ 146 (390)
T TIGR02360 74 GTEIAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRP-YVTFERD------GE 146 (390)
T ss_pred ceEEeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCcc-EEEEEEC------Ce
Confidence 2222211111 1122111111112345778889999998888999999998888765332222 45553 3 21
Q ss_pred ccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCc
Q 006778 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTY 341 (631)
Q Consensus 262 ~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~~~~ 341 (631)
..+++||+||+|||.+|.+|+++ +... .......+..++..+. +......... .+.+. ..
T Consensus 147 -------~~~i~adlvIGADG~~S~VR~~l----~~~~-~~~~~~~~~~~~~~l~--~~~~~~~~~~-~~~~~---~~-- 206 (390)
T TIGR02360 147 -------RHRLDCDFIAGCDGFHGVSRASI----PAEV-LKEFERVYPFGWLGIL--SETPPVSHEL-IYSNH---ER-- 206 (390)
T ss_pred -------EEEEEeCEEEECCCCchhhHHhc----Cccc-ceeeeccCCcceEEEe--cCCCCCCCce-EEEeC---CC--
Confidence 14799999999999999999975 2221 0000111112222211 1111111111 11111 11
Q ss_pred ceEEEEEeCC-CeEEEEEEEcCCCCCCCCCcHHHHHHhhc--CcchhccccCCceeeecceeeccCCcccCCcccCCCEE
Q 006778 342 GGSFLYHMND-RQIALGLVVALNYHNPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGA 418 (631)
Q Consensus 342 G~~~~~~~~~-~~~~ig~~~~~d~~~~~~~~~~~~~~~~~--~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~ 418 (631)
+..++++.+ +...+.+....+...+........+.++. .+.+.+.+..+..... ...+... ...++|..+|++
T Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~grvv 282 (390)
T TIGR02360 207 -GFALCSMRSATRSRYYVQVPLTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIEK--SIAPLRS-FVCEPMQYGRLF 282 (390)
T ss_pred -ceEEEeccCCCcceEEEEcCCCCChhhCChhHHHHHHHHhcCchhhhhhccCCccce--eeeeHHh-hccccCccCCEE
Confidence 122344432 22122222221100111111111111111 1223222221211110 0111111 123567889999
Q ss_pred EEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccC--CCchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 419 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH--EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 419 LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~--~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
|||||||.|+|+.|||+|+||+||..||++|.+... ...+|+.|++.++.+ +.+..+.++.+.++++
T Consensus 283 LvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~~~~~al~~Y~~~R~~r-~~~~~~~s~~~~~~~~ 351 (390)
T TIGR02360 283 LAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQEGSSAGIEGYSARALAR-VWKAERFSWWMTSLLH 351 (390)
T ss_pred EEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999986543 246899999998865 7788888888777764
No 33
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.95 E-value=4.5e-26 Score=255.83 Aligned_cols=339 Identities=17% Similarity=0.185 Sum_probs=190.6
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCc
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (631)
.+.+||+||||||+||++|+.|++. |++|+||||.+.+... ..+.++.++++ +++..+...+..........
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~------G~~v~viE~~~~~~~~-~ra~~l~~~~~-~~l~~lGl~~~l~~~~~~~~ 92 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQ------GVPVVLLDDDDTLSTG-SRAICFAKRSL-EIFDRLGCGERMVDKGVSWN 92 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC------CCcEEEEeCCCCCCCC-CeEEEEcHHHH-HHHHHcCCcHHHHhhCceee
Confidence 3578999999999999999999999 9999999999865332 23456666665 33333322111000000000
Q ss_pred c-eEeeccCCcccCC--CCC-CCC-CcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCcccc
Q 006778 185 K-FWFLTKDRAFSLP--SPF-SNR-GNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (631)
Q Consensus 185 ~-~~~l~~~~~~~~p--~~~-~~~-~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~ 258 (631)
. ..+........++ ... ... ..+.+.+..+.+.|.+.+.+. |++|+++++++++..++++.. +.+.+ .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~--v~~~~----~ 166 (547)
T PRK08132 93 VGKVFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT--LTVET----P 166 (547)
T ss_pred ceeEEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE--EEEEC----C
Confidence 0 0111111111111 000 111 134478889999999999875 699999999999988775432 33322 1
Q ss_pred CCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCC
Q 006778 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (631)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~ 338 (631)
+| ..+++||+||+|||.+|.+|+.+ ++..........+.+ . ...+... .+.....+++-+...
T Consensus 167 ~g--------~~~i~ad~vVgADG~~S~vR~~l----g~~~~g~~~~~~~~~-~--d~~~~~~--~~~~~~~~~~~~~~~ 229 (547)
T PRK08132 167 DG--------PYTLEADWVIACDGARSPLREML----GLEFEGRTFEDRFLI-A--DVKMKAD--FPTERWFWFDPPFHP 229 (547)
T ss_pred CC--------cEEEEeCEEEECCCCCcHHHHHc----CCCCCCccccceEEE-E--EEEecCC--CCCeeeEEEeccCCC
Confidence 11 14799999999999999988864 554211111111111 1 0111111 122222233222222
Q ss_pred CCcceEEEEEeCCCeEEEEEEEcCCCC-CCCCCcHHHHHHhhcCcchhccccCCce--eeecceeeccCCcccCCcccCC
Q 006778 339 KTYGGSFLYHMNDRQIALGLVVALNYH-NPFLNPYEEFQKFKHHPAIKPLLEGGTV--VQYGARTLNEGGLQSIPYPVFP 415 (631)
Q Consensus 339 ~~~G~~~~~~~~~~~~~ig~~~~~d~~-~~~~~~~~~~~~~~~~p~i~~~l~~~~~--~~~~~~~i~~gg~~~~p~~~~~ 415 (631)
+ ...++++..++...+.+....+.. .....+.+.. +.+.+++..... +.+.. +........++|..+
T Consensus 230 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~g 299 (547)
T PRK08132 230 G--QSVLLHRQPDNVWRIDFQLGWDADPEAEKKPENVI------PRVRALLGEDVPFELEWVS--VYTFQCRRMDRFRHG 299 (547)
T ss_pred C--cEEEEEeCCCCeEEEEEecCCCCCchhhcCHHHHH------HHHHHHcCCCCCeeEEEEE--eeeeeeeeecccccc
Confidence 2 124555666665555443221110 0011111111 122333321111 11100 000111234578889
Q ss_pred CEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC---CchHHHHHHHHHHhHHHHHHHHHhccchhh
Q 006778 416 GGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (631)
Q Consensus 416 ~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (631)
||+|+|||||.++|+.|||+|+||+||..||+.|+..+.. ...|+.|+++|+.. ..+.+..++....++
T Consensus 300 RV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~-~~~~~~~s~~~~~~~ 371 (547)
T PRK08132 300 RVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFA-ADENIRNSTRSTDFI 371 (547)
T ss_pred cEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999876544 46799999999974 555555555554444
No 34
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.95 E-value=2.4e-26 Score=248.85 Aligned_cols=335 Identities=13% Similarity=0.101 Sum_probs=193.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeC-CCC--CCc-cccccccChHhHHHHhhhhhhcCCCeee-ec
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG-AEV--GAH-IISGNVFEPRALNELLPQWKQEEAPIRV-PV 181 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~-~~~--g~~-~~~g~~i~~~~l~~l~~~~~~~~~~~~~-~~ 181 (631)
.+||+||||||+||++|+.|++. |++|+|+|+. +.. +.. ...+..+.+.++ +++..++..+..... ..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~-~~L~~lGl~~~l~~~~~~ 76 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES------DLRIAVIEGQLPEEALNELPDVRVSALSRSSE-HILRNLGAWQGIEARRAA 76 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC------CCEEEEEcCCCCcccccCCCCcceecccHHHH-HHHHhCCchhhhhhhhCC
Confidence 58999999999999999999999 9999999996 221 110 112345666554 333333221111000 01
Q ss_pred cCcceEeeccC--CcccCCCCC--CCCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCcc
Q 006778 182 SSDKFWFLTKD--RAFSLPSPF--SNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (631)
Q Consensus 182 ~~~~~~~l~~~--~~~~~p~~~--~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~ 256 (631)
....+.+.+.. ..+.++... ....++.+.+..+.+.|.+.+.+. |++++++++|+++..++++ + .|.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~-~v~~~~--- 151 (405)
T PRK08850 77 PYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE-A-WLTLDN--- 151 (405)
T ss_pred cccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-E-EEEECC---
Confidence 11122222211 111122111 112267889999999999998775 7999999999999877643 3 466655
Q ss_pred ccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcce-eeEEEEEEeecCCCCCCCcEEEEeccC
Q 006778 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTY-ALGIKEVWEIDEGKHNPGEILHTLGWP 335 (631)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~h~~~~~ 335 (631)
|.+++||+||+|||.+|.+|+.+ ++.. . ...| ..++......+ ....+.....++
T Consensus 152 ------------g~~~~a~lvIgADG~~S~vR~~~----~~~~--~--~~~~~~~~~~~~v~~~--~~~~~~~~~~~~-- 207 (405)
T PRK08850 152 ------------GQALTAKLVVGADGANSWLRRQM----DIPL--T--HWDYGHSALVANVRTV--DPHNSVARQIFT-- 207 (405)
T ss_pred ------------CCEEEeCEEEEeCCCCChhHHHc----CCCe--e--EEeeccEEEEEEEEcc--CCCCCEEEEEEc--
Confidence 67899999999999999999865 4442 1 1111 12222222221 112222222221
Q ss_pred CCCCCcceEEEEEeCC-CeEEEEEEEcCCCCCC--CCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcc
Q 006778 336 LDQKTYGGSFLYHMND-RQIALGLVVALNYHNP--FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (631)
Q Consensus 336 ~~~~~~G~~~~~~~~~-~~~~ig~~~~~d~~~~--~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~ 412 (631)
.. |...++|..+ +..++.+....+.... ..+..+..+.+.. .+...+...+... .....+. .....++|
T Consensus 208 -~~---g~~~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~-~~~~~pl-~~~~~~~~ 279 (405)
T PRK08850 208 -PQ---GPLAFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTA--EFDNRLGLCEVVG-ERQAFPL-KMRYARDF 279 (405)
T ss_pred -CC---CceEEEECCCCCeEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhhCcEEEcc-cccEEec-ceeecccc
Confidence 11 2245678765 4556666553221110 0111111111111 0001110000000 0001111 11224578
Q ss_pred cCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccC---C---CchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 413 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH---E---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 413 ~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~---~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
..+|++|+|||||.++|..|||+|+||+||..||+.|..... . ..+|++|++.|+.. ..+.+..++.+..+|.
T Consensus 280 ~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~l~~~~~ 358 (405)
T PRK08850 280 VRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAE-AAKMIAAMQGFRDLFS 358 (405)
T ss_pred ccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHC
Confidence 889999999999999999999999999999999999986542 1 36799999888864 6777777777777764
No 35
>PLN02985 squalene monooxygenase
Probab=99.95 E-value=1.8e-25 Score=246.87 Aligned_cols=361 Identities=15% Similarity=0.196 Sum_probs=206.6
Q ss_pred cCccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeee-ecc
Q 006778 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV-PVS 182 (631)
Q Consensus 104 ~~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~-~~~ 182 (631)
....+||+|||||++|+++|+.|++. |++|+|+||...... ...|..+.+..+. .+..++..+..... ...
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~------G~~V~vlEr~~~~~~-~~~g~~L~p~g~~-~L~~LGl~d~l~~~~~~~ 111 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKD------GRRVHVIERDLREPE-RMMGEFMQPGGRF-MLSKLGLEDCLEGIDAQK 111 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHc------CCeEEEEECcCCCCc-cccccccCchHHH-HHHHcCCcchhhhccCcc
Confidence 34578999999999999999999999 999999999754322 2245666665542 22222211111000 011
Q ss_pred CcceEeeccCCc--ccCCCCCC----CCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCc
Q 006778 183 SDKFWFLTKDRA--FSLPSPFS----NRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (631)
Q Consensus 183 ~~~~~~l~~~~~--~~~p~~~~----~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g 255 (631)
...+.+...... ..++.... ...++.+++..|.+.|.+++.+. ||+++.+ +++++..++ +.+.+|++.+
T Consensus 112 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~~v~gV~~~~-- 187 (514)
T PLN02985 112 ATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-GVIKGVTYKN-- 187 (514)
T ss_pred cccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-CEEEEEEEEc--
Confidence 122222222211 22221111 11247899999999999999876 6998866 577776654 5666777643
Q ss_pred cccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccC
Q 006778 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (631)
Q Consensus 256 ~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~ 335 (631)
.+|+. .++.||+||+|||.+|.+|+++ +... .....+..++.. .. .....++.. |.+ .
T Consensus 188 --~dG~~-------~~~~AdLVVgADG~~S~vR~~l----~~~~---~~~~s~~~~~~~-~~--~~~~~~~~~-~~~--~ 245 (514)
T PLN02985 188 --SAGEE-------TTALAPLTVVCDGCYSNLRRSL----NDNN---AEVLSYQVGYIS-KN--CRLEEPEKL-HLI--M 245 (514)
T ss_pred --CCCCE-------EEEECCEEEECCCCchHHHHHh----ccCC---CcceeEeEEEEE-cc--ccCCCCCcc-eEE--c
Confidence 23432 4678999999999999999976 2221 111233334321 11 111122222 221 0
Q ss_pred CCCCCcceEEEEEeCCCeEEEEEEEcCCCCCCCCCcHHHHHHhhc--Cc----chhccccCC-ceeeecceeeccCCccc
Q 006778 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH--HP----AIKPLLEGG-TVVQYGARTLNEGGLQS 408 (631)
Q Consensus 336 ~~~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~--~p----~i~~~l~~~-~~~~~~~~~i~~gg~~~ 408 (631)
... +...+||..++...+.+....+. .|.....+....++. .| .+++.+..+ .... ..+..+.. ...
T Consensus 246 -~~~--~~~l~ypi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~-~~~~~p~~-~l~ 319 (514)
T PLN02985 246 -SKP--SFTMLYQISSTDVRCVFEVLPDN-IPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGA-HIKVVPTK-RMS 319 (514)
T ss_pred -CCC--ceEEEEEeCCCeEEEEEEEeCCC-CCCcChhhHHHHHHhccccccCHHHHHHHHhhccccc-ceeecCcc-ccc
Confidence 111 33578888888776665554331 122222121111111 12 233322110 0000 00111111 111
Q ss_pred CCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhccc--CC----CchHHHHHHHHHHhHHHHHHHHHhccc
Q 006778 409 IPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL--HE----DSNMEIYWDTLQKSWVWQELQRARNYR 482 (631)
Q Consensus 409 ~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l--~~----~~~l~~Y~~~~~~~~~~~~l~~~r~~~ 482 (631)
...+..+|++|||||||+++|+.|||+++|++||.+|++.|...- .+ ..+|++|+..|+.+ .......++.+.
T Consensus 320 ~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r-~~~i~~la~al~ 398 (514)
T PLN02985 320 ATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPM-SATVNTLGNAFS 398 (514)
T ss_pred ccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcc-hhHHHHHHHHHH
Confidence 224456799999999999999999999999999999999997532 11 36799999999865 777777777777
Q ss_pred hhhhh--cchHHHHHHHHHHHHhcC
Q 006778 483 PAFEY--GLLPGLAICGLEHYILRG 505 (631)
Q Consensus 483 ~~~~~--g~~~~~~~~~~~~~~~~~ 505 (631)
++|.. .-....+..+...++..|
T Consensus 399 ~~f~a~~~~~~~~l~~~~f~y~~~g 423 (514)
T PLN02985 399 QVLVASTDEAKEAMRQGCYDYLCSG 423 (514)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 77742 122334555555555443
No 36
>PRK06996 hypothetical protein; Provisional
Probab=99.95 E-value=1e-25 Score=243.31 Aligned_cols=335 Identities=18% Similarity=0.171 Sum_probs=193.7
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCC----CeEEEEeeCCCCCCc-cccccccChHhHH--HHhhhhhhcCCCe
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVD----LSVCVVEKGAEVGAH-IISGNVFEPRALN--ELLPQWKQEEAPI 177 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G----~~V~vlEk~~~~g~~-~~~g~~i~~~~l~--~l~~~~~~~~~~~ 177 (631)
.+.+||+||||||+|+++|+.|++. | ++|+|+|+.+..... ...+..+.+..+. +.+..|.....+.
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~------g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~ 82 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARR------SATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPI 82 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC------CCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcc
Confidence 4579999999999999999999997 6 579999997643211 1134556665553 2233344322222
Q ss_pred eeeccCcceEeeccC--CcccC--CCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCC
Q 006778 178 RVPVSSDKFWFLTKD--RAFSL--PSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (631)
Q Consensus 178 ~~~~~~~~~~~l~~~--~~~~~--p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d 253 (631)
. .+.+.+.. ....+ ........+|++++..|.+.|.+.+++.|++++.+++++++..++++ | .|.+.+
T Consensus 83 ~------~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v-~v~~~~ 154 (398)
T PRK06996 83 E------HIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG-V-TLALGT 154 (398)
T ss_pred c------EEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-E-EEEECC
Confidence 1 11111100 00111 11111123689999999999999999999999999999999776654 3 355543
Q ss_pred CccccCCCccccccCceEEEcCEEEEecCC-CCchhHHHHHHcCCCcccccCCccee-eEEEEEEeecCCCCCCCcEEEE
Q 006778 254 MGIAKDGSKKENFQRGVELRGRITLLAEGC-RGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDEGKHNPGEILHT 331 (631)
Q Consensus 254 ~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~-~s~~~~~l~~~~g~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~h~ 331 (631)
.+| +.+++||+||+|||. +|.+++.+ +... ....|+ .++...+.. ....++.....
T Consensus 155 ----~~g--------~~~i~a~lvIgADG~~~s~~r~~~----~~~~----~~~~~~~~~~~~~v~~--~~~~~~~~~~~ 212 (398)
T PRK06996 155 ----PQG--------ARTLRARIAVQAEGGLFHDQKADA----GDSA----RRRDYGQTAIVGTVTV--SAPRPGWAWER 212 (398)
T ss_pred ----CCc--------ceEEeeeEEEECCCCCchHHHHHc----CCCc----eeeecCCeEEEEEEEc--cCCCCCEEEEE
Confidence 111 268999999999997 46656543 4432 111121 122222222 11122222211
Q ss_pred eccCCCCCCcceEEEEEeCCCe---EEEEEEEcCCCCC--CCCCcHHHHHHhhcCcchhccccCCceeeecce-eeccCC
Q 006778 332 LGWPLDQKTYGGSFLYHMNDRQ---IALGLVVALNYHN--PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGAR-TLNEGG 405 (631)
Q Consensus 332 ~~~~~~~~~~G~~~~~~~~~~~---~~ig~~~~~d~~~--~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~-~i~~gg 405 (631)
+. .. |...++|+.++. ..+.+....+... ......+..+.+.. .+...+. ........ .++..
T Consensus 213 ~~---~~---G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~--~~~~~~~~~~~~l~- 281 (398)
T PRK06996 213 FT---HE---GPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGA--AFGTRMG--RFTRIAGRHAFPLG- 281 (398)
T ss_pred ec---CC---CCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HhccccC--ceEEecceEEEeee-
Confidence 21 11 324456776543 4554443321100 01111111122211 1111111 01100101 12221
Q ss_pred cccCCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHhHHHHHHHHHhccchhh
Q 006778 406 LQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (631)
Q Consensus 406 ~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (631)
....++|..+|++|||||||.++|+.|||+|+||+||..||++|........+|++|++.|+.. ....+..++.+.++|
T Consensus 282 ~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~l~~~~ 360 (398)
T PRK06996 282 LNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDHGATPLALATFAARRALD-RRVTIGATDLLPRLF 360 (398)
T ss_pred cccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3344578889999999999999999999999999999999999976433346799999999865 677777888777777
Q ss_pred hh
Q 006778 486 EY 487 (631)
Q Consensus 486 ~~ 487 (631)
..
T Consensus 361 ~~ 362 (398)
T PRK06996 361 TV 362 (398)
T ss_pred cC
Confidence 53
No 37
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.95 E-value=2.8e-26 Score=246.98 Aligned_cols=334 Identities=16% Similarity=0.135 Sum_probs=192.1
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCc
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (631)
+..+||+||||||+||++|+.|++. |++|+|||+.+.... . .+..+.+.++ +++..+..............
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~------G~~v~liE~~~~~~~-~-r~~~l~~~s~-~~l~~lgl~~~~~~~~~~~~ 75 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARA------GASVALVAPEPPYAD-L-RTTALLGPSI-RFLERLGLWARLAPHAAPLQ 75 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC------CCeEEEEeCCCCCCC-c-chhhCcHHHH-HHHHHhCchhhhHhhcceee
Confidence 3468999999999999999999999 999999999875432 1 1233444433 23332221100000011111
Q ss_pred ceEeeccCCc------ccCCC--CCCCCCcEEEeHHHHHHHHHHHHHhcC-cEEecCceEEEEEEcCCCcEEEEEeCCCc
Q 006778 185 KFWFLTKDRA------FSLPS--PFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMG 255 (631)
Q Consensus 185 ~~~~l~~~~~------~~~p~--~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~gV~~~d~g 255 (631)
.+.+.+.... ..+.. ......+|.+++..+.+.|.+.+.+.+ +. +++++|+++..++++ + .|++.+
T Consensus 76 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~-~-~v~~~~-- 150 (388)
T PRK07494 76 SMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE-V-TVTLAD-- 150 (388)
T ss_pred EEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe-E-EEEECC--
Confidence 2222221111 11110 011223688999999999999998875 55 789999999877644 3 366655
Q ss_pred cccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccC
Q 006778 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (631)
Q Consensus 256 ~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~ 335 (631)
|.+++||+||+|||.+|.+++.+ ++........+ .+ +. ..+.............+.
T Consensus 151 -------------g~~~~a~~vI~AdG~~S~vr~~~----g~~~~~~~~~~-~~--~~--~~v~~~~~~~~~~~~~~~-- 206 (388)
T PRK07494 151 -------------GTTLSARLVVGADGRNSPVREAA----GIGVRTWSYPQ-KA--LV--LNFTHSRPHQNVSTEFHT-- 206 (388)
T ss_pred -------------CCEEEEeEEEEecCCCchhHHhc----CCCceecCCCC-EE--EE--EEEeccCCCCCEEEEEeC--
Confidence 57899999999999999988754 55421111111 11 11 122211111222122221
Q ss_pred CCCCCcceEEEEEeCCCeEEEEEEEcCCCCC--CCCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCccc
Q 006778 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHN--PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 413 (631)
Q Consensus 336 ~~~~~~G~~~~~~~~~~~~~ig~~~~~d~~~--~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~ 413 (631)
.. |..+++|++++..++.+....+... ...++.+..+.+.. .+.+++...+... .....+... ...++|.
T Consensus 207 -~~---g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~-~~~~~~l~~-~~~~~~~ 278 (388)
T PRK07494 207 -EG---GPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEE--RMQSMLGKLTLEP-GRQAWPLSG-QVAHRFA 278 (388)
T ss_pred -CC---CcEEEEECCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhcCCeEEcc-CCcEeechH-HHHHhhc
Confidence 11 3467889887777666654322100 01111111122211 1222222111110 001111111 1224678
Q ss_pred CCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC---CchHHHHHHHHHHhHHHHHHHHHhccchhh
Q 006778 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (631)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (631)
.+|++|+|||||.++|+.|||+|+||+||..||+.|...... ...|+.|++.|+.. ....+.....+...|
T Consensus 279 ~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~~~ 352 (388)
T PRK07494 279 AGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPD-ILSRTASVDLLNRSL 352 (388)
T ss_pred cCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999875432 36799999999865 544455555555555
No 38
>PRK06184 hypothetical protein; Provisional
Probab=99.95 E-value=1.3e-25 Score=249.68 Aligned_cols=337 Identities=17% Similarity=0.135 Sum_probs=188.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
++||+||||||+||++|+.|++. |++|+||||.+.+... ..+..+.++++ +++..++..+...........+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~------Gi~v~viE~~~~~~~~-~ra~~l~~~~~-e~l~~lGl~~~l~~~~~~~~~~ 74 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR------GVSFRLIEKAPEPFPG-SRGKGIQPRTQ-EVFDDLGVLDRVVAAGGLYPPM 74 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCCCcC-ccceeecHHHH-HHHHHcCcHHHHHhcCccccce
Confidence 58999999999999999999999 9999999998765432 24566677665 3333332211000000000011
Q ss_pred EeeccCCc---ccCC-----CCC-CCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccc
Q 006778 187 WFLTKDRA---FSLP-----SPF-SNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (631)
Q Consensus 187 ~~l~~~~~---~~~p-----~~~-~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~ 257 (631)
.+...... ..+. ... .....+.+++..+.+.|.+.+.+.|++|+++++++++..++++ | .|.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~---- 148 (502)
T PRK06184 75 RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG-V-TARVAG---- 148 (502)
T ss_pred eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-E-EEEEEe----
Confidence 11110000 0000 000 0112467889999999999999999999999999999887754 3 233321
Q ss_pred cCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCC
Q 006778 258 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLD 337 (631)
Q Consensus 258 ~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~ 337 (631)
.+ ++.+++||+||+|||.+|.+|+++ ++............+ +.. ..++. ... ...+.+ ...
T Consensus 149 ~~--------~~~~i~a~~vVgADG~~S~vR~~l----gi~~~g~~~~~~~~~-~~~-~~~~~--~~~-~~~~~~--~~~ 209 (502)
T PRK06184 149 PA--------GEETVRARYLVGADGGRSFVRKAL----GIGFPGETLGIDRML-VAD-VSLTG--LDR-DAWHQW--PDG 209 (502)
T ss_pred CC--------CeEEEEeCEEEECCCCchHHHHhC----CCCcccCcCCCceEE-EEE-EEeec--CCC-cceEEc--cCC
Confidence 00 146899999999999999998865 554311111110111 111 11211 111 122222 111
Q ss_pred CCCcceEEEEEeCCC-eEEEEEEEcCCCCCCCCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcccCCC
Q 006778 338 QKTYGGSFLYHMNDR-QIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPG 416 (631)
Q Consensus 338 ~~~~G~~~~~~~~~~-~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~ 416 (631)
. .+...++|..++ ...+.+....+ ..+...+.+..+.+........ +. ...+.+. ..+. ......++|..+|
T Consensus 210 ~--~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~-~~-~~~~~~~-~~~~-~~~~~a~~~~~gR 282 (502)
T PRK06184 210 D--MGMIALCPLPGTDLFQIQAPLPPG-GEPDLSADGLTALLAERTGRTD-IR-LHSVTWA-SAFR-MNARLADRYRVGR 282 (502)
T ss_pred C--CcEEEEEEccCCCeEEEEEEcCCC-ccCCCCHHHHHHHHHHhcCCCC-cc-eeeeeee-eccc-cceeEhhhhcCCc
Confidence 1 122446676544 33333332221 1112222222222221111000 00 0001110 0000 0111235778899
Q ss_pred EEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC--CchHHHHHHHHHHhHHHHHHHHHhccchh
Q 006778 417 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPA 484 (631)
Q Consensus 417 v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~--~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~ 484 (631)
++|+|||||.++|+.|||+|+||+||..||+.|+..+.. ...|+.|+++|+.. ..+.+..++.....
T Consensus 283 v~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~lL~~Ye~eR~p~-~~~~~~~s~~~~~~ 351 (502)
T PRK06184 283 VFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAGAPEALLDTYEEERRPV-AAAVLGLSTELLDA 351 (502)
T ss_pred EEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875543 46799999999974 55555555554333
No 39
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.95 E-value=1.5e-25 Score=240.91 Aligned_cols=336 Identities=13% Similarity=0.112 Sum_probs=190.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCC--CC--c-cccccccChHhHHHHhhhhhhcCCCeee-e
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV--GA--H-IISGNVFEPRALNELLPQWKQEEAPIRV-P 180 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~--g~--~-~~~g~~i~~~~l~~l~~~~~~~~~~~~~-~ 180 (631)
.+||+||||||+||++|+.|++. |++|+|+|+.+.. .. . ......+.+.++. ++..++..+..... .
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~------G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~-~L~~lG~~~~~~~~~~ 75 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ------GRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVD-LLESLGAWSSIVAMRV 75 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC------CCcEEEEcCCCcccCCCCCCCCccEEEecHHHHH-HHHHCCCchhhhHhhC
Confidence 48999999999999999999999 9999999987521 10 0 0111245665542 33333211110000 0
Q ss_pred ccCcceEeec-cCCcccCCCC-C-CCCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCcc
Q 006778 181 VSSDKFWFLT-KDRAFSLPSP-F-SNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (631)
Q Consensus 181 ~~~~~~~~l~-~~~~~~~p~~-~-~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~ 256 (631)
.....+.... ......++.. . ....+|++.+..|...|.+.+++. |++++++++|++++.++++ + .|++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~-~v~~~~--- 150 (384)
T PRK08849 76 CPYKRLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-N-RVTLES--- 150 (384)
T ss_pred CccceEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-E-EEEECC---
Confidence 0011111111 1111112111 0 111247788888999998888764 6999999999999887754 3 466665
Q ss_pred ccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006778 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (631)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~ 336 (631)
|.+++||+||+|||.+|.+|+++ ++.. .......++. +..+.......+.....+ ++.
T Consensus 151 ------------g~~~~~~lvIgADG~~S~vR~~~----gi~~-~~~~~~~~~~----v~~~~~~~~~~~~~~~~~-~~~ 208 (384)
T PRK08849 151 ------------GAEIEAKWVIGADGANSQVRQLA----GIGI-TAWDYRQHCM----LINVETEQPQQDITWQQF-TPS 208 (384)
T ss_pred ------------CCEEEeeEEEEecCCCchhHHhc----CCCc-eeccCCCeEE----EEEEEcCCCCCCEEEEEe-CCC
Confidence 67899999999999999999865 4432 1111111111 112222222223222212 221
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEcCC-CC-CCCCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcccC
Q 006778 337 DQKTYGGSFLYHMNDRQIALGLVVALN-YH-NPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 414 (631)
Q Consensus 337 ~~~~~G~~~~~~~~~~~~~ig~~~~~d-~~-~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~ 414 (631)
|...++|+.++..++.+..... .. ....++.+..+.+... +...+..-..... ..++. .....++|..
T Consensus 209 -----g~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~--~~~~l-~~~~~~~~~~ 278 (384)
T PRK08849 209 -----GPRSFLPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRH--FPAELGEIKVLQH--GSFPL-TRRHAQQYVK 278 (384)
T ss_pred -----CCEEEeEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHH--hhhhhCcEEeccc--eEeec-cccccchhcc
Confidence 2223467766554444432211 00 0011222222223211 1111111011111 11111 1224568899
Q ss_pred CCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhccc-CCCchHHHHHHHHHHhHHHHHHHHHhccchhhhh
Q 006778 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL-HEDSNMEIYWDTLQKSWVWQELQRARNYRPAFEY 487 (631)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l-~~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~~ 487 (631)
+|++|+|||||.|+|+.|||+|+||+||..|+++|.... ....+|+.|++.|+.+ ........+.+..+|..
T Consensus 279 grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~~ 351 (384)
T PRK08849 279 NNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQGVLNDASFARYERRRRPD-NLLMQTGMDLFYKTFSN 351 (384)
T ss_pred CCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999987432 2247899999999875 66666666666666653
No 40
>PF05187 ETF_QO: Electron transfer flavoprotein-ubiquinone oxidoreductase; InterPro: IPR007859 Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane. The two redox centres in the protein, FAD and a [4Fe4S] cluster, are present in a 64 kDa monomer [].; GO: 0004174 electron-transferring-flavoprotein dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2GMJ_B 2GMH_B.
Probab=99.95 E-value=1.6e-29 Score=213.87 Aligned_cols=95 Identities=59% Similarity=1.022 Sum_probs=62.3
Q ss_pred cchHHHHHHHHHHHHhcCCCCccccCCCCCcccchhhhcCCCCCCCCCCCCccccccccccccCCccCCCCCCceEecCC
Q 006778 488 GLLPGLAICGLEHYILRGKSPYTLKHGKPDHEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDP 567 (631)
Q Consensus 488 g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 567 (631)
|+|.|+++.++++++++|+.||++++.++|+.++++++.++||+||||||+||||++|||++|||+|+|||||||+|+|+
T Consensus 1 G~~~G~~~~g~~~~~~~g~~p~tl~~~~~D~~~l~~a~~~~~i~YpKpDg~ltFDklssv~~SgT~HeEdQP~HL~l~d~ 80 (110)
T PF05187_consen 1 GLYGGLAYSGLDQNLLKGRAPWTLKHKKPDHESLKPASKCKPIDYPKPDGKLTFDKLSSVYLSGTNHEEDQPCHLKLKDP 80 (110)
T ss_dssp HHHHHHHHHHHHTTTTTT--S------S-GGGG---GGGS---------SSSS--HHHHHHTTT-B--SSS--SEEESST
T ss_pred ChHHHHHHHHHHHHHccCCCCcccCCCCccHHHHhHHHhcccCCCCCCCCCCccccccceeccccCCCCCCCCeeEECCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCccccce
Q 006778 568 KIPELVNLPEYAGPE 582 (631)
Q Consensus 568 ~~~~~~~~~~~~~p~ 582 (631)
++|.+.|+++|+.||
T Consensus 81 ~i~~~~~~~~y~~P~ 95 (110)
T PF05187_consen 81 EIPIEVNLPEYGGPE 95 (110)
T ss_dssp THHHHTHHHHHS-TH
T ss_pred ChhhhhhhhhhcChh
Confidence 999999888776555
No 41
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.95 E-value=3.1e-25 Score=250.94 Aligned_cols=349 Identities=15% Similarity=0.173 Sum_probs=197.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHh-hcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQ-LCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~-~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (631)
.++||+||||||+||++|+.|++ . |++|+||||.+.... ...+..+.++++ +++..++..+..........
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~------Gi~v~IiE~~~~~~~-~grA~gl~prtl-eiL~~lGl~d~l~~~g~~~~ 102 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFP------DITTRIVERKPGRLE-LGQADGIACRTM-EMFQAFGFAERILKEAYWIN 102 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCC------CCcEEEEEcCCCCCC-CCeeeEEChHHH-HHHHhccchHHHHhhccccc
Confidence 46899999999999999999999 6 999999999875322 223456777776 34443332111111111111
Q ss_pred ceEeeccCC----c-------ccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcC--cEEecCceEEEEEEcCCC-cEEEEE
Q 006778 185 KFWFLTKDR----A-------FSLPSPFSNRGNYVISLSQLVRWLGGKAEELG--VEIYPGFAASEILYDADN-KVIGIG 250 (631)
Q Consensus 185 ~~~~l~~~~----~-------~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~G--v~i~~g~~v~~i~~~~~g-~v~gV~ 250 (631)
.+.+..... . ...+..........+++..+.+.|.+.+.+.| +++.++++++++..++++ ..+.|+
T Consensus 103 ~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~ 182 (634)
T PRK08294 103 ETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVT 182 (634)
T ss_pred ceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEE
Confidence 111111100 0 01111111122457889999999999998876 578899999999877532 212455
Q ss_pred eCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCc-EE
Q 006778 251 TNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGE-IL 329 (631)
Q Consensus 251 ~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~-~~ 329 (631)
+.+..-.++|+ ..+++||+||+|||++|.+|+++ |+.. .........++..+..... .+.. ..
T Consensus 183 l~~~~~~~~g~-------~~tv~A~~lVGaDGa~S~VR~~l----gi~~--~G~~~~~~~~v~dv~~~~~---~p~~~~~ 246 (634)
T PRK08294 183 LRRTDGEHEGE-------EETVRAKYVVGCDGARSRVRKAI----GREL--RGDSANHAWGVMDVLAVTD---FPDIRLK 246 (634)
T ss_pred EEECCCCCCCc-------eEEEEeCEEEECCCCchHHHHhc----CCCc--cCCcccceEEEEEEEEccC---CCCcceE
Confidence 54310001232 26899999999999999999976 5542 1122112223332221111 1221 11
Q ss_pred EEeccCCCCCCcceEEEEEeCCCe-EEEEEEEcC-CC-C---CCCCCcHHHHHHhhc--CcchhccccCCceeee-ccee
Q 006778 330 HTLGWPLDQKTYGGSFLYHMNDRQ-IALGLVVAL-NY-H---NPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQY-GART 400 (631)
Q Consensus 330 h~~~~~~~~~~~G~~~~~~~~~~~-~~ig~~~~~-d~-~---~~~~~~~~~~~~~~~--~p~i~~~l~~~~~~~~-~~~~ 400 (631)
..+ + .. ..|...++|.+++. +.+.+.... +. . .....+.+..+.++. .|...++ ..+.+ ....
T Consensus 247 ~~~-~-~~--~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~----~~v~w~s~y~ 318 (634)
T PRK08294 247 CAI-Q-SA--SEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDV----KEVAWWSVYE 318 (634)
T ss_pred EEE-e-cC--CCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCce----eEEeEEeccc
Confidence 111 1 11 12445678887774 444332211 10 0 112233333333322 1211111 11111 1000
Q ss_pred ecc---CCcccCC---c-ccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC---CchHHHHHHHHHHhH
Q 006778 401 LNE---GGLQSIP---Y-PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSW 470 (631)
Q Consensus 401 i~~---gg~~~~p---~-~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~---~~~l~~Y~~~~~~~~ 470 (631)
+.. ..|...+ . +..+||+|+|||||.++|..|||+|++|+||..||+.|+..+.. ...|+.|+++|+..
T Consensus 319 i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~- 397 (634)
T PRK08294 319 VGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAI- 397 (634)
T ss_pred ccceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-
Confidence 000 0110001 1 23589999999999999999999999999999999999876654 47799999999974
Q ss_pred HHHHHHHHhccchhhhh
Q 006778 471 VWQELQRARNYRPAFEY 487 (631)
Q Consensus 471 ~~~~l~~~r~~~~~~~~ 487 (631)
..+.+...+.+..+|..
T Consensus 398 a~~li~~~~~~~~l~~~ 414 (634)
T PRK08294 398 AQELIDFDREWSTMMAA 414 (634)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 66777777777777743
No 42
>PRK06834 hypothetical protein; Provisional
Probab=99.95 E-value=2.9e-25 Score=244.64 Aligned_cols=324 Identities=16% Similarity=0.136 Sum_probs=187.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHH-----hhhhhhcCCCeeeec
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL-----LPQWKQEEAPIRVPV 181 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l-----~~~~~~~~~~~~~~~ 181 (631)
++||+||||||+||++|+.|++. |++|+||||.+........+..+.++++.-+ .+.+........
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~------G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~--- 73 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA------GVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQ--- 73 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccc---
Confidence 58999999999999999999999 9999999998753211112445677665222 111211111110
Q ss_pred cCcceEeeccCCcccCCC-CCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCC
Q 006778 182 SSDKFWFLTKDRAFSLPS-PFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (631)
Q Consensus 182 ~~~~~~~l~~~~~~~~p~-~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G 260 (631)
...+... .+++.. .......+.+.+..+.+.|.+.+++.|++|+++++++++..++++ + .|++.+
T Consensus 74 -~~~~~~~----~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v-~v~~~~------- 139 (488)
T PRK06834 74 -VTGFAAT----RLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-V-DVELSD------- 139 (488)
T ss_pred -cceeeeE----ecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-E-EEEECC-------
Confidence 0111110 011110 011122466888999999999999999999999999999887753 3 355544
Q ss_pred CccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCC
Q 006778 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKT 340 (631)
Q Consensus 261 ~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~~~ 340 (631)
|.+++||+||+|||.+|.+++.+ ++... ........+ +.. ..++... ..+ .+ ...
T Consensus 140 --------g~~i~a~~vVgADG~~S~vR~~l----gi~~~-g~~~~~~~~-~~d-v~~~~~~-~~~--~~-------~~~ 194 (488)
T PRK06834 140 --------GRTLRAQYLVGCDGGRSLVRKAA----GIDFP-GWDPTTSYL-IAE-VEMTEEP-EWG--VH-------RDA 194 (488)
T ss_pred --------CCEEEeCEEEEecCCCCCcHhhc----CCCCC-CCCcceEEE-EEE-EEecCCC-Ccc--ee-------eCC
Confidence 56899999999999999988754 55531 111111111 111 1221110 000 00 011
Q ss_pred cceEEEEEeC-CCeEEEEEEEcCCCCCCCCCcHHHHH-HhhcCcchhccccCCceeeecceeeccCCcccCCcccCCCEE
Q 006778 341 YGGSFLYHMN-DRQIALGLVVALNYHNPFLNPYEEFQ-KFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGA 418 (631)
Q Consensus 341 ~G~~~~~~~~-~~~~~ig~~~~~d~~~~~~~~~~~~~-~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~ 418 (631)
.|...+.+.. ++...+.+........... ..+++. .+... . ..-+...... +. ..++. .....++|..+|++
T Consensus 195 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~-~-g~~~~~~~~~-~~-~~~~~-~~r~a~~~~~gRV~ 268 (488)
T PRK06834 195 LGIHAFGRLEDEGPVRVMVTEKQVGATGEP-TLDDLREALIAV-Y-GTDYGIHSPT-WI-SRFTD-MARQAASYRDGRVL 268 (488)
T ss_pred CceEEEeccCCCCeEEEEEecCCCCCCCCC-CHHHHHHHHHHh-h-CCCCccccce-eE-Eeccc-cceecccccCCcEE
Confidence 2223344444 5566655543221111112 223322 22210 0 0000000011 10 00111 11234678889999
Q ss_pred EEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC---CchHHHHHHHHHHhHHHHHHHHHhccchhh
Q 006778 419 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (631)
Q Consensus 419 LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (631)
|+|||||.++|+.|||+|++|+||..||+.|+..+.. ...|++|+++|+.. ..+.+........++
T Consensus 269 LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~-~~~~~~~t~~~~~~~ 337 (488)
T PRK06834 269 LAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPV-AARVLRNTMAQVALL 337 (488)
T ss_pred EEeeccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999876653 46799999999864 555555554444444
No 43
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.95 E-value=2.6e-25 Score=240.40 Aligned_cols=330 Identities=14% Similarity=0.132 Sum_probs=186.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|+||||||+||++|+.|++. |++|+|+||.+.... ...|..+.+.++..| ..+...............+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~------G~~V~i~E~~~~~~~-~g~gi~l~~~~~~~L-~~~Gl~~~l~~~~~~~~~~~ 74 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR------GWAVTIIEKAQELSE-VGAGLQLAPNAMRHL-ERLGVADRLSGTGVTPKALY 74 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCccCc-CCccceeChhHHHHH-HHCCChHHHhhcccCcceEE
Confidence 5799999999999999999999 999999999876532 224556666655322 22221111000111111222
Q ss_pred eeccCCc---c--cC---CCCCCCCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCcccc
Q 006778 188 FLTKDRA---F--SL---PSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (631)
Q Consensus 188 ~l~~~~~---~--~~---p~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~ 258 (631)
+.+.... . .. .........+.++|..|.+.|.+.+.+. |++++++++|+++..++++ + .|++.+ .
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~----~ 148 (400)
T PRK06475 75 LMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIR----T 148 (400)
T ss_pred EecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEe----C
Confidence 2221100 0 00 0000011234689999999999998764 7999999999999876543 3 344322 0
Q ss_pred CCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeec---CCC----CCCCcEEEE
Q 006778 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEID---EGK----HNPGEILHT 331 (631)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~---~~~----~~~g~~~h~ 331 (631)
+ ++.+++||+||+|||.+|.+|+++ +... ..... ...+......+ ... ...+....+
T Consensus 149 ~--------~~~~~~adlvIgADG~~S~vR~~~----~~~~-~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (400)
T PRK06475 149 N--------SVETVSAAYLIACDGVWSMLRAKA----GFSK-ARFSG---HIAWRTTLAADALPASFLSAMPEHKAVSAW 212 (400)
T ss_pred C--------CCcEEecCEEEECCCccHhHHhhc----CCCC-CCcCC---ceEEEEEeehhhcchhhhhhcccCCceEEE
Confidence 0 145799999999999999999975 2221 11111 11222222211 100 011222222
Q ss_pred eccCCCCCCcceEEEEEeCCCeEEEEEEEcCC--CCCCCC--CcHHHH-HHhhc-CcchhccccCCceeeecceeeccCC
Q 006778 332 LGWPLDQKTYGGSFLYHMNDRQIALGLVVALN--YHNPFL--NPYEEF-QKFKH-HPAIKPLLEGGTVVQYGARTLNEGG 405 (631)
Q Consensus 332 ~~~~~~~~~~G~~~~~~~~~~~~~ig~~~~~d--~~~~~~--~~~~~~-~~~~~-~p~i~~~l~~~~~~~~~~~~i~~gg 405 (631)
++ .+ +...+||+.++.....+....+ ....+. ...+.+ +.+.. .|.+..+++...... ..+...
T Consensus 213 ~g----~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~----~~~l~~ 282 (400)
T PRK06475 213 LG----NK--AHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAIDEWT----YWPLFE 282 (400)
T ss_pred Ec----CC--CEEEEEEccCCcEEEEEEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHHHhcCCcee----ECcCcc
Confidence 21 11 2356788876644332222111 011111 112222 22322 344555554322211 111111
Q ss_pred cccCCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHhHHHHHHHHHh
Q 006778 406 LQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRAR 479 (631)
Q Consensus 406 ~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~~~~l~~Y~~~~~~~~~~~~l~~~r 479 (631)
....+.|..+|++|||||||.++|+.|||+++||+||..||++|... .-..+|+.|++.|+.+ +.+.+..++
T Consensus 283 ~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~-~~~~aL~~Ye~~R~~r-~~~~~~~s~ 354 (400)
T PRK06475 283 MADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDSD-DQSAGLKRFDSVRKER-IAAVAKRGQ 354 (400)
T ss_pred cCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 11222345689999999999999999999999999999999999532 1247899999999875 666666655
No 44
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.95 E-value=1.5e-25 Score=241.37 Aligned_cols=336 Identities=16% Similarity=0.137 Sum_probs=198.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCc--c--ccccccChHhHHHHhhhhhhcCCCee-ee
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH--I--ISGNVFEPRALNELLPQWKQEEAPIR-VP 180 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~--~--~~g~~i~~~~l~~l~~~~~~~~~~~~-~~ 180 (631)
+.+||+|||||||||++|+.|++. |++|+|+||.+..... . ..+..+.+.++ +++..+........ ..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~-~~l~~~g~~~~~~~~~~ 76 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS------GLRVALLAPRAPPRPADDAWDSRVYAISPSSQ-AFLERLGVWQALDAARL 76 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCccccCCCCCCceEeecHHHH-HHHHHcCchhhhhhhcC
Confidence 568999999999999999999999 9999999998765321 0 11134555544 23333321111000 00
Q ss_pred ccCcceEeeccC-CcccCCCC--CCCCCcEEEeHHHHHHHHHHHHHhcC-cEEecCceEEEEEEcCCCcEEEEEeCCCcc
Q 006778 181 VSSDKFWFLTKD-RAFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (631)
Q Consensus 181 ~~~~~~~~l~~~-~~~~~p~~--~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~gV~~~d~g~ 256 (631)
.....+.+.... ..+.+... ......+.+++..+.+.|.+.+++.| ++++ +++++++..++++ + .|++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~-~-~v~~~~--- 150 (388)
T PRK07608 77 APVYDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA-A-TLTLAD--- 150 (388)
T ss_pred CcceEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe-E-EEEECC---
Confidence 111122222211 11111111 01122577999999999999999887 9999 9999999776643 3 477665
Q ss_pred ccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006778 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (631)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~ 336 (631)
|.+++||+||+|+|.+|.+++.+ ++.. ...+ ....++....+.+. ...+...+++ .
T Consensus 151 ------------g~~~~a~~vI~adG~~S~vr~~~----~~~~--~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~---~ 206 (388)
T PRK07608 151 ------------GQVLRADLVVGADGAHSWVRSQA----GIKA--ERRP-YRQTGVVANFKAER--PHRGTAYQWF---R 206 (388)
T ss_pred ------------CCEEEeeEEEEeCCCCchHHHhc----CCCc--cccc-cCCEEEEEEEEecC--CCCCEEEEEe---c
Confidence 56899999999999999887754 4442 1111 11233332223222 1122233332 1
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEcCCCCCC--CCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcccC
Q 006778 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 414 (631)
Q Consensus 337 ~~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~--~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~ 414 (631)
.+ +..+++|++++.+.+.+....+.... ...+.+..+.++.. +...+.....+.. ...++.. ...++.|..
T Consensus 207 -~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 279 (388)
T PRK07608 207 -DD--GILALLPLPDGHVSMVWSARTAHADELLALSPEALAARVERA--SGGRLGRLECVTP-AAGFPLR-LQRVDRLVA 279 (388)
T ss_pred -CC--CCEEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHH--HHHhcCCceecCC-cceeecc-hhhhhhhhc
Confidence 21 33578899988877765543211100 01221222222110 0011110011000 0011111 123467888
Q ss_pred CCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccC-----CCchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-----EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~-----~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
+|++|||||||.++|+.|||+++||+||..||++|..... ...+|++|++.|+.. +...++.++.+..+|.
T Consensus 280 ~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 355 (388)
T PRK07608 280 PRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARRED-ILALQVATDGLQRLFA 355 (388)
T ss_pred CceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999976531 126799999999865 6667777777777774
No 45
>PRK07236 hypothetical protein; Provisional
Probab=99.95 E-value=2e-25 Score=240.20 Aligned_cols=329 Identities=17% Similarity=0.129 Sum_probs=183.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (631)
+..||+||||||+||++|+.|++. |++|+|+||.+........|..+.+..+ +++..+...... ........
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~g~gi~l~~~~~-~~l~~lg~~~~~-~~~~~~~~ 76 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRA------GWDVDVFERSPTELDGRGAGIVLQPELL-RALAEAGVALPA-DIGVPSRE 76 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC------CCCEEEEecCCCCcCCCCceeEeCHHHH-HHHHHcCCCccc-ccccCccc
Confidence 458999999999999999999999 9999999998743222223444566544 344444322111 11111112
Q ss_pred eEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccc
Q 006778 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (631)
Q Consensus 186 ~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (631)
..+.......-.... .....+.+..+.+.|.+.+ .+++|+++++|+++..++++ | .|.+.+
T Consensus 77 ~~~~~~~g~~~~~~~---~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v-~v~~~~------------ 137 (386)
T PRK07236 77 RIYLDRDGRVVQRRP---MPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDR-V-TARFAD------------ 137 (386)
T ss_pred eEEEeCCCCEeeccC---CCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCe-E-EEEECC------------
Confidence 222222111100000 0112246777888777644 34789999999999877643 4 466665
Q ss_pred ccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceee-EEEEEE---eecCCCC--CCCcEEEEeccCCCCC
Q 006778 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYAL-GIKEVW---EIDEGKH--NPGEILHTLGWPLDQK 339 (631)
Q Consensus 266 f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~-g~~~~~---~~~~~~~--~~g~~~h~~~~~~~~~ 339 (631)
|.+++||+||+|||.+|.+|+++. +-. .+...+. .+..+. .++.... .......+++ .+
T Consensus 138 ---g~~~~ad~vIgADG~~S~vR~~l~---~~~-----~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~ 202 (386)
T PRK07236 138 ---GRRETADLLVGADGGRSTVRAQLL---PDV-----RPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLG----PG 202 (386)
T ss_pred ---CCEEEeCEEEECCCCCchHHHHhC---CCC-----CCCcCCeEEEEEecchHHcCchhhhhcccceEEEEc----CC
Confidence 678999999999999999999772 111 1111111 111111 1111100 0111111111 11
Q ss_pred CcceEEEEEeCC---------CeEEEEEEEcCCCC--------C-----------CCCCcHHHHHHh----h--cCcchh
Q 006778 340 TYGGSFLYHMND---------RQIALGLVVALNYH--------N-----------PFLNPYEEFQKF----K--HHPAIK 385 (631)
Q Consensus 340 ~~G~~~~~~~~~---------~~~~ig~~~~~d~~--------~-----------~~~~~~~~~~~~----~--~~p~i~ 385 (631)
+..+.|++.+ ....+.+....+.. + +.....+..+.+ . ..|.+.
T Consensus 203 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 280 (386)
T PRK07236 203 --SHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFA 280 (386)
T ss_pred --ceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHH
Confidence 1234555432 12333333222110 0 000011111222 1 234455
Q ss_pred ccccCCceeeecceeeccCCcccCCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccC-CCchHHHHHH
Q 006778 386 PLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-EDSNMEIYWD 464 (631)
Q Consensus 386 ~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~-~~~~l~~Y~~ 464 (631)
++++..... +... +. .. ..++|..+|++|||||||.++|+.|||+|+||+||..||++|..... ...+|+.|++
T Consensus 281 ~~~~~~~~~-~~~~-~~--~~-~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~~~~~~al~~Ye~ 355 (386)
T PRK07236 281 ELVEATAQP-FVQA-IF--DL-EVPRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAAGDIDAALAAWEA 355 (386)
T ss_pred HHHhhCcCc-hhhh-hh--cc-cCcccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 555432211 1000 11 11 23678889999999999999999999999999999999999987533 2578999999
Q ss_pred HHHHhHHHHHHHHHhccchh
Q 006778 465 TLQKSWVWQELQRARNYRPA 484 (631)
Q Consensus 465 ~~~~~~~~~~l~~~r~~~~~ 484 (631)
.|+++ ..+.+..++.+...
T Consensus 356 ~R~~r-~~~~~~~s~~~~~~ 374 (386)
T PRK07236 356 ERLAV-GAAIVARGRRLGAR 374 (386)
T ss_pred HhhHH-HHHHHHHHHHHHHH
Confidence 99975 66666666544433
No 46
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.95 E-value=1.8e-25 Score=241.08 Aligned_cols=335 Identities=14% Similarity=0.082 Sum_probs=189.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc-----ccccccChHhHHHHhhhhhhcCCCeee-
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-----ISGNVFEPRALNELLPQWKQEEAPIRV- 179 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~-----~~g~~i~~~~l~~l~~~~~~~~~~~~~- 179 (631)
.+|||+||||||+|+++|+.|++. |++|+|||+.+...... .....+.+..+ +++..|...+.....
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~------G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~-~~l~~lGl~~~~~~~~ 76 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH------GFSVAVLEHAAPAPFDADSQPDVRISAISAASV-ALLKGLGVWDAVQAMR 76 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC------CCEEEEEcCCCCCcccccCCCCceEEeccHHHH-HHHHHcCChhhhhhhh
Confidence 469999999999999999999999 99999999986321100 01124555544 233333211100000
Q ss_pred eccCcceEeec-cCCcccCCC--CCCCCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCc
Q 006778 180 PVSSDKFWFLT-KDRAFSLPS--PFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (631)
Q Consensus 180 ~~~~~~~~~l~-~~~~~~~p~--~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g 255 (631)
......+.... ....+.+.. ......+|.+++..|.+.|.+.+.+. |++++++++++++..++++ + .|.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~-- 152 (391)
T PRK08020 77 SHPYRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG-W-ELTLAD-- 152 (391)
T ss_pred CcccceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe-E-EEEECC--
Confidence 00001111100 011111110 00112357899999999999998876 9999999999999876643 3 466655
Q ss_pred cccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccC
Q 006778 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (631)
Q Consensus 256 ~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~ 335 (631)
|.+++||+||+|||.+|.+|+.+ ++........ ..++......+. ...+...+.+..
T Consensus 153 -------------g~~~~a~~vI~AdG~~S~vR~~~----~~~~~~~~y~---~~~~~~~~~~~~--~~~~~~~~~~~~- 209 (391)
T PRK08020 153 -------------GEEIQAKLVIGADGANSQVRQMA----GIGVHGWQYR---QSCMLISVKCEN--PPGDSTWQQFTP- 209 (391)
T ss_pred -------------CCEEEeCEEEEeCCCCchhHHHc----CCCccccCCC---ceEEEEEEEecC--CCCCEEEEEEcC-
Confidence 56899999999999999988864 4432111111 122221222221 122323322221
Q ss_pred CCCCCcceEEEEEeCCCeEEEEEEEcCCCCCC-CCCcHHHHH-HhhcCcchhccccCCceeeecceeeccCCcccCCccc
Q 006778 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHNP-FLNPYEEFQ-KFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 413 (631)
Q Consensus 336 ~~~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~-~~~~~~~~~-~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~ 413 (631)
. |...++|..++...+.+......... ...+.+++. .+.. .+.+.+. +........++.. ....++|.
T Consensus 210 --~---g~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~--~~~~~~~~~~pl~-~~~~~~~~ 279 (391)
T PRK08020 210 --S---GPRAFLPLFDNWASLVWYDSPARIRQLQAMSMAQLQQEIAA--HFPARLG--AVTPVAAGAFPLT-RRHALQYV 279 (391)
T ss_pred --C---CCEEEeECCCCcEEEEEECCHHHHHHHHCCCHHHHHHHHHH--Hhhhhcc--ceEeccccEeecc-eeehhhhc
Confidence 1 22456788777777766532210000 000122221 1111 0111111 1111111112211 12356788
Q ss_pred CCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC------CchHHHHHHHHHHhHHHHHHHHHhccchhh
Q 006778 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (631)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~------~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (631)
.+|++|+|||||.++|+.|||+|+||+||..||+.|.+.... ...|+.|++.|+.+ ....+.....+..+|
T Consensus 280 ~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~l~~~~ 356 (391)
T PRK08020 280 QPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMAD-NLLMQSGMDLFYAGF 356 (391)
T ss_pred cCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999875321 36799999998865 333333344444444
No 47
>PTZ00367 squalene epoxidase; Provisional
Probab=99.95 E-value=4.2e-25 Score=245.10 Aligned_cols=364 Identities=14% Similarity=0.173 Sum_probs=202.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (631)
.++||+||||||+|+++|+.|++. |++|+|+||.+........|..+.+.++. .+..|+..+...........
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~------G~~V~VlEr~~~~~~~r~~G~~L~p~g~~-~L~~LGL~d~l~~i~~~~~~ 104 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQ------GRKVLMLERDLFSKPDRIVGELLQPGGVN-ALKELGMEECAEGIGMPCFG 104 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhc------CCEEEEEccccccccchhhhhhcCHHHHH-HHHHCCChhhHhhcCcceee
Confidence 479999999999999999999999 99999999976211111245567776553 22333211110111111122
Q ss_pred eEeecc-CCcccCCCCCCCCCcEEEeHHHHHHHHHHHH---HhcCcEEecCceEEEEEEcCCC---cEEEEEeCCCcc--
Q 006778 186 FWFLTK-DRAFSLPSPFSNRGNYVISLSQLVRWLGGKA---EELGVEIYPGFAASEILYDADN---KVIGIGTNDMGI-- 256 (631)
Q Consensus 186 ~~~l~~-~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a---~~~Gv~i~~g~~v~~i~~~~~g---~v~gV~~~d~g~-- 256 (631)
+.+.+. .....++.. ....++.++++.+.+.|.+.+ ...+++++. .+|+++..++.+ ++.+|++...+.
T Consensus 105 ~~v~~~~G~~~~i~~~-~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~ 182 (567)
T PTZ00367 105 YVVFDHKGKQVKLPYG-AGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYD 182 (567)
T ss_pred eEEEECCCCEEEecCC-CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCccc
Confidence 333222 112222211 112355678999999998887 345799974 578888665432 356676543110
Q ss_pred --------ccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcE
Q 006778 257 --------AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEI 328 (631)
Q Consensus 257 --------~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~ 328 (631)
+.+.........|.+++||+||+|||.+|.+|+++ +... ..........|+.. ..... ..++..
T Consensus 183 ~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l----~~~~-~~~~~~s~~~g~~~-~~~~l--p~~~~~ 254 (567)
T PTZ00367 183 VPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRY----QHYT-PASENHSHFVGLVL-KNVRL--PKEQHG 254 (567)
T ss_pred ccccccccccccccccccccceEEEeCEEEECCCcchHHHHHc----cCCC-CCcCcceEEEEEEE-ecccC--CCCCee
Confidence 00000001122467899999999999999999976 3221 01112222233221 11111 112211
Q ss_pred EEEeccCCCCCCcceEEEEEeCCCeEEEEEEEcCCCCCCCCCcHHHHHHhhc--Cc----chhccc----cCCceeeecc
Q 006778 329 LHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH--HP----AIKPLL----EGGTVVQYGA 398 (631)
Q Consensus 329 ~h~~~~~~~~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~--~p----~i~~~l----~~~~~~~~~~ 398 (631)
..+++ .+ |..++||+.++...+.+..... ..|... +..+.+.. .| .+++.+ .....+
T Consensus 255 ~v~~g----~~--gpi~~yPl~~~~~r~lv~~~~~-~~p~~~--~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l---- 321 (567)
T PTZ00367 255 TVFLG----KT--GPILSYRLDDNELRVLVDYNKP-TLPSLE--EQSEWLIEDVAPHLPENMRESFIRASKDTKRI---- 321 (567)
T ss_pred EEEEc----CC--ceEEEEEcCCCeEEEEEEecCC-cCCChH--HHHHHHHHhhcccCcHHHHHHHHHhhcccCCe----
Confidence 11121 22 4468999998888766554322 111111 11111111 11 122211 110111
Q ss_pred eeeccCCcccCCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhccc-------CC----CchHH----HHH
Q 006778 399 RTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL-------HE----DSNME----IYW 463 (631)
Q Consensus 399 ~~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l-------~~----~~~l~----~Y~ 463 (631)
+..+...+. ..++..+|++|||||||+++|+.|||+++||+||.+|++.|.... .+ ..+|+ .|+
T Consensus 322 ~~~p~~~~p-~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~ 400 (567)
T PTZ00367 322 RSMPNARYP-PAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYA 400 (567)
T ss_pred EEeeHhhCC-CccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHH
Confidence 111111111 124567899999999999999999999999999999999997532 11 24466 999
Q ss_pred HHHHHhHHHHHHHHHhccchhhhhcchHHHHHHHHHHHHhcC
Q 006778 464 DTLQKSWVWQELQRARNYRPAFEYGLLPGLAICGLEHYILRG 505 (631)
Q Consensus 464 ~~~~~~~~~~~l~~~r~~~~~~~~g~~~~~~~~~~~~~~~~~ 505 (631)
+.|+.. .......++.+...|.. ..+..+...++..|
T Consensus 401 ~~Rk~~-a~~i~~ls~aL~~lf~~----~~lr~~~~~y~~~g 437 (567)
T PTZ00367 401 RNRKTH-ASTINILSWALYSVFSS----PALRDACLDYFSLG 437 (567)
T ss_pred HHhhhh-HHHHHHHHHHHHHHhCh----HHHHHHHHHHHhcC
Confidence 888865 56666666666677754 34666666666655
No 48
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.94 E-value=3.3e-25 Score=240.66 Aligned_cols=337 Identities=18% Similarity=0.167 Sum_probs=195.5
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCC-CeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhc------CCCeeeec
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQE------EAPIRVPV 181 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G-~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~------~~~~~~~~ 181 (631)
+|+|||||++||++|+.|++. | ++|+|+||.+.++. ...|..+.+.++..+ ..+... ........
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~------g~~~v~v~Er~~~~~~-~G~gi~l~~~~~~~L-~~lg~~~~~~~~~~~~~~~~ 73 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH------SHLNVQLFEAAPAFGE-VGAGVSFGANAVRAI-VGLGLGEAYTQVADSTPAPW 73 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc------CCCCEEEEecCCcCCC-CccceeeCccHHHHH-HHcCChhHHHHHhcCCCccC
Confidence 699999999999999999998 7 69999999987653 233455666555322 222211 10000000
Q ss_pred cCcceEeeccCCcccCCCC-CCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCC
Q 006778 182 SSDKFWFLTKDRAFSLPSP-FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (631)
Q Consensus 182 ~~~~~~~l~~~~~~~~p~~-~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G 260 (631)
....+.+........+... ....+...++|..|.+.|.+.+.. +.++++++|+++..++++ + .|.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~~v~~~~~v~~i~~~~~~-~-~v~~~~------- 142 (414)
T TIGR03219 74 QDIWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE--GIASFGKRATQIEEQAEE-V-QVLFTD------- 142 (414)
T ss_pred cceeEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC--ceEEcCCEEEEEEecCCc-E-EEEEcC-------
Confidence 0000111111000000000 111223468899999999887643 568899999999877654 3 566665
Q ss_pred CccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCccee-eEEEEEEeecC---CC----CC---CCcEE
Q 006778 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDE---GK----HN---PGEIL 329 (631)
Q Consensus 261 ~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~-~g~~~~~~~~~---~~----~~---~g~~~ 329 (631)
|.+++||+||+|||.+|.+|+.+....+.. ...+...+ ..+..+..... .. .. .+...
T Consensus 143 --------g~~~~ad~vVgADG~~S~vR~~l~~~~~~~---~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (414)
T TIGR03219 143 --------GTEYRCDLLIGADGIKSALRDYVLQGQGQA---PVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQ 211 (414)
T ss_pred --------CCEEEeeEEEECCCccHHHHHHhcCccCCC---CCCccccCcEEEEEEeeHHHHhhhhccccccccccccce
Confidence 678999999999999999999875322221 11222222 22232221111 00 00 01111
Q ss_pred EEeccCCCCCCcceEEEEEeCCCeEE-EEEEEcCC-C-------CCCC---CCcHHHHHHhh-cCcchhccccCCceeee
Q 006778 330 HTLGWPLDQKTYGGSFLYHMNDRQIA-LGLVVALN-Y-------HNPF---LNPYEEFQKFK-HHPAIKPLLEGGTVVQY 396 (631)
Q Consensus 330 h~~~~~~~~~~~G~~~~~~~~~~~~~-ig~~~~~d-~-------~~~~---~~~~~~~~~~~-~~p~i~~~l~~~~~~~~ 396 (631)
.++ ..+ +..++||..++... +.+..... . ..++ ....+..+.|. .+|.+.++++.......
T Consensus 212 ~~~----~~~--~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~ 285 (414)
T TIGR03219 212 MYL----GLD--GHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPTL 285 (414)
T ss_pred EEE----cCC--CeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCCCc
Confidence 111 111 22457787766542 22222110 0 0011 11122233342 24556655553222110
Q ss_pred cceeeccCCcccCCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC----CchHHHHHHHHHHhHHH
Q 006778 397 GARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVW 472 (631)
Q Consensus 397 ~~~~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~----~~~l~~Y~~~~~~~~~~ 472 (631)
..+ .....+++|..+|++|||||||.|.|+.|||+++||+||..||++|...... +.+|+.|++.|+.+ +.
T Consensus 286 --~~~--~~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~r-~~ 360 (414)
T TIGR03219 286 --WAL--HDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPR-AC 360 (414)
T ss_pred --eee--eecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhHH-HH
Confidence 011 1122457888999999999999999999999999999999999999764321 47899999999975 88
Q ss_pred HHHHHHhccchhhh
Q 006778 473 QELQRARNYRPAFE 486 (631)
Q Consensus 473 ~~l~~~r~~~~~~~ 486 (631)
+.++.++....+++
T Consensus 361 ~~~~~s~~~~~~~~ 374 (414)
T TIGR03219 361 RVQRTSREAGELYE 374 (414)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888777664
No 49
>PRK07190 hypothetical protein; Provisional
Probab=99.94 E-value=6.6e-25 Score=241.54 Aligned_cols=328 Identities=16% Similarity=0.147 Sum_probs=188.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhh------hhhcCCCeee
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQ------WKQEEAPIRV 179 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~------~~~~~~~~~~ 179 (631)
..+||+||||||+||++|+.|++. |++|+||||.+.... ...+..+.++.+ +++.. +.....+...
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~------Gi~V~llEr~~~~~~-~gra~~l~~~tl-e~L~~lGl~~~l~~~~~~~~~ 75 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLC------GLNTVIVDKSDGPLE-VGRADALNARTL-QLLELVDLFDELYPLGKPCNT 75 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHc------CCCEEEEeCCCcccc-cccceEeCHHHH-HHHHhcChHHHHHhhCcccee
Confidence 358999999999999999999999 999999999986543 223445666665 22222 1111112111
Q ss_pred e-ccCcceEeeccCCc-cc-CCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCcc
Q 006778 180 P-VSSDKFWFLTKDRA-FS-LPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (631)
Q Consensus 180 ~-~~~~~~~~l~~~~~-~~-~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~ 256 (631)
. +.... .++..... +. .+. ......+.+.+..+.+.|.+.+.+.|++|+++++|+++..++++ + .|.+.+
T Consensus 76 ~~~~~~g-~~i~~~~~~~~~~~~-~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v-~v~~~~--- 148 (487)
T PRK07190 76 SSVWANG-KFISRQSSWWEELEG-CLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-C-LTTLSN--- 148 (487)
T ss_pred EEEecCC-ceEeeccccCccCCc-CCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-e-EEEECC---
Confidence 0 00000 01100000 00 000 01112356788999999999999999999999999999988755 3 244444
Q ss_pred ccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCC-CCCCCcEEEEeccC
Q 006778 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEG-KHNPGEILHTLGWP 335 (631)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~g~~~h~~~~~ 335 (631)
|.+++||+||+|||.+|.+|+++ |+... ...+...+.-+.. .+... ...+. ... + .
T Consensus 149 ------------g~~v~a~~vVgADG~~S~vR~~l----gi~f~-g~~~~~~~~~~d~--~~~~~~~~~~~-~~~-~--~ 205 (487)
T PRK07190 149 ------------GERIQSRYVIGADGSRSFVRNHF----NVPFE-IIRPQIIWAVIDG--VIDTDFPKVPE-IIV-F--Q 205 (487)
T ss_pred ------------CcEEEeCEEEECCCCCHHHHHHc----CCCcc-ccccceeEEEEEE--EEccCCCCCcc-eEE-E--E
Confidence 56899999999999999999864 65531 1122211111111 11111 00111 111 1 1
Q ss_pred CCCCCcceEEEEEeCCCeEEEEEEEcCCCCCCCCCcHHHHHHhhc--CcchhccccCCceeeecceeeccCCcccCCccc
Q 006778 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 413 (631)
Q Consensus 336 ~~~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~--~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~ 413 (631)
... |..+++|..++...+-+.. + .+.....+..+.+.. .|.- +. ...+.+.. .++.. .....++.
T Consensus 206 ~~~---g~~~~~p~~~~~~r~~~~~--~--~~~~t~~~~~~~l~~~~~~~~---~~-~~~~~w~s-~~~~~-~r~a~~~r 272 (487)
T PRK07190 206 AET---SDVAWIPREGEIDRFYVRM--D--TKDFTLEQAIAKINHAMQPHR---LG-FKEIVWFS-QFSVK-ESVAEHFF 272 (487)
T ss_pred cCC---CCEEEEECCCCEEEEEEEc--C--CCCCCHHHHHHHHHHhcCCCC---Cc-eEEEEEEE-EeeeC-cEehhhcC
Confidence 111 3456778876554432211 1 111222222222321 1110 11 01111110 11111 11234554
Q ss_pred -CCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC---CchHHHHHHHHHHhHHHHHHHHHhccchhh
Q 006778 414 -FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (631)
Q Consensus 414 -~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (631)
.+||+|+|||||.++|..|||+|++|+||..|++.|+..+.. ...|+.|+++|+.. ..+.+...+.+...+
T Consensus 273 ~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~-a~~vl~~t~~~~~~~ 347 (487)
T PRK07190 273 IQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPV-AQGVIETSGELVRST 347 (487)
T ss_pred cCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHhhc
Confidence 689999999999999999999999999999999999876543 46799999999864 555566655544443
No 50
>PRK06126 hypothetical protein; Provisional
Probab=99.94 E-value=1.1e-24 Score=244.83 Aligned_cols=332 Identities=17% Similarity=0.134 Sum_probs=186.4
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhh------hcCCCee
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWK------QEEAPIR 178 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~------~~~~~~~ 178 (631)
.+++||+||||||+||++|+.|++. |++|+||||.+..... ..+..+.++++ +++..|+ ....+..
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~------G~~v~viEr~~~~~~~-~ra~~l~~r~~-e~L~~lGl~~~l~~~g~~~~ 76 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRR------GVDSILVERKDGTAFN-PKANTTSARSM-EHFRRLGIADEVRSAGLPVD 76 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCCCCC-CccccCCHHHH-HHHHhcChHHHHHhhcCCcc
Confidence 4568999999999999999999999 9999999998754322 23455677666 3333332 1121111
Q ss_pred eeccCcceEeec--cC--CcccCCCC--------------CCCCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEE
Q 006778 179 VPVSSDKFWFLT--KD--RAFSLPSP--------------FSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEIL 239 (631)
Q Consensus 179 ~~~~~~~~~~l~--~~--~~~~~p~~--------------~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~ 239 (631)
. .....+... .. ..+.++.. ......+.+++..+.+.|.+.+++. |++|+++++|+++.
T Consensus 77 ~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~ 154 (545)
T PRK06126 77 Y--PTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFE 154 (545)
T ss_pred c--cCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEE
Confidence 0 000001000 00 00011000 0111245688999999999999875 79999999999998
Q ss_pred EcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeec
Q 006778 240 YDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEID 319 (631)
Q Consensus 240 ~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 319 (631)
.++++ |. |.+.+ ..+|+ ..+++||+||+|||.+|.+|+++ ++.. .......+.+. .....+
T Consensus 155 ~~~~~-v~-v~~~~---~~~g~-------~~~i~ad~vVgADG~~S~VR~~l----gi~~-~g~~~~~~~~~--~~~~~~ 215 (545)
T PRK06126 155 QDADG-VT-ATVED---LDGGE-------SLTIRADYLVGCDGARSAVRRSL----GISY-EGTSGLQRDLS--IYIRAP 215 (545)
T ss_pred ECCCe-EE-EEEEE---CCCCc-------EEEEEEEEEEecCCcchHHHHhc----CCcc-ccCCCcceEEE--EEEEcC
Confidence 87754 42 44332 12232 25799999999999999999865 5442 11111112221 122222
Q ss_pred CC--CCCCC-cEEEEeccCCCCCCcceEEEEEeCCCe-EEEEEEEcCCCCCCCCCcHHHHHHhhcCcchhccccCC---c
Q 006778 320 EG--KHNPG-EILHTLGWPLDQKTYGGSFLYHMNDRQ-IALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGG---T 392 (631)
Q Consensus 320 ~~--~~~~g-~~~h~~~~~~~~~~~G~~~~~~~~~~~-~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~---~ 392 (631)
.. ..... ...+++..| +.. +++++..++. ..+. ............+.+..+.+. +.+... +
T Consensus 216 ~l~~~~~~~~~~~~~~~~p---~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 283 (545)
T PRK06126 216 GLAALVGHDPAWMYWLFNP---DRR--GVLVAIDGRDEWLFH-QLRGGEDEFTIDDVDARAFVR------RGVGEDIDYE 283 (545)
T ss_pred chHHHhcCCCceEEEEECC---Ccc--EEEEEECCCCeEEEE-EecCCCCCCCCCHHHHHHHHH------HhcCCCCCeE
Confidence 10 11111 122322222 212 3455554332 2222 121111111122222222222 111100 1
Q ss_pred eeeecceeeccCCcccCCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC---CchHHHHHHHHHHh
Q 006778 393 VVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKS 469 (631)
Q Consensus 393 ~~~~~~~~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~---~~~l~~Y~~~~~~~ 469 (631)
..... ... ......++|..+|++|+|||||.++|+.|||+|+||+||..||+.|...+.. ...|+.|+++|+..
T Consensus 284 i~~~~--~w~-~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p~ 360 (545)
T PRK06126 284 VLSVV--PWT-GRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRPI 360 (545)
T ss_pred EEeec--ccc-hhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhHH
Confidence 11000 000 1112345788899999999999999999999999999999999999876543 47899999999974
Q ss_pred HHHHHHHHHhcc
Q 006778 470 WVWQELQRARNY 481 (631)
Q Consensus 470 ~~~~~l~~~r~~ 481 (631)
.......++..
T Consensus 361 -~~~~~~~s~~~ 371 (545)
T PRK06126 361 -AARNTDYARRN 371 (545)
T ss_pred -HHHHHHHHHHH
Confidence 55555555543
No 51
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.94 E-value=8.8e-25 Score=235.93 Aligned_cols=339 Identities=18% Similarity=0.179 Sum_probs=192.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCC---c-cccccccChHhHHHHhhhhhhcCCCeeeec
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA---H-IISGNVFEPRALNELLPQWKQEEAPIRVPV 181 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~---~-~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~ 181 (631)
+.+||+||||||||+++|+.|+++.. .|++|+||||...... . ...+..+.+.++.. +..+...........
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~---~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~lgl~~~~~~~~~ 77 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSH---GGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQ-LARLGVWQALADCAT 77 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhccc---CCCEEEEEeCCCcccccCCCCCccceeccHHHHHH-HHHCCChhhhHhhcC
Confidence 46899999999999999999987411 2999999999532211 0 11244455554422 222211100000000
Q ss_pred cCcceEeeccCC--cccCC--CCCCCCCcEEEeHHHHHHHHHHHHHh-cCcEEecCceEEEEEEcCCCcEEEEEeCCCcc
Q 006778 182 SSDKFWFLTKDR--AFSLP--SPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (631)
Q Consensus 182 ~~~~~~~l~~~~--~~~~p--~~~~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~ 256 (631)
....+.+.+... ...+. ........+.+.+..+.+.|.+.+.+ .|++++++++|+++..++++ + .|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~-~v~~~~--- 152 (395)
T PRK05732 78 PITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS-V-RVTLDD--- 152 (395)
T ss_pred CccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-E-EEEECC---
Confidence 111111111100 00110 00011124778999999999998876 47999999999999776543 3 466655
Q ss_pred ccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006778 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (631)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~ 336 (631)
|.++.+|+||+|+|.+|.+++.+ ++........+ ..+.. .++......+.....+.
T Consensus 153 ------------g~~~~a~~vI~AdG~~S~vr~~~----~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~--- 208 (395)
T PRK05732 153 ------------GETLTGRLLVAADGSHSALREAL----GIDWQQHPYEQ---VAVIA--NVTTSEAHQGRAFERFT--- 208 (395)
T ss_pred ------------CCEEEeCEEEEecCCChhhHHhh----CCCccceecCC---EEEEE--EEEecCCCCCEEEEeec---
Confidence 56799999999999999888754 44421111111 11111 12111111222222221
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEcCCCCC--CCCCcHHHHHHhhcC-c-chhccccCCceeeecceeeccCCcccCCcc
Q 006778 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHN--PFLNPYEEFQKFKHH-P-AIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (631)
Q Consensus 337 ~~~~~G~~~~~~~~~~~~~ig~~~~~d~~~--~~~~~~~~~~~~~~~-p-~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~ 412 (631)
. .|..+++|.+++...+.+....+... ...+..+..+.+... + .+..+.+......+ +. .....++|
T Consensus 209 -~--~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l-~~~~~~~~ 279 (395)
T PRK05732 209 -E--HGPLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFGWRLGRITHAGKRSAY-----PL-ALVTAAQQ 279 (395)
T ss_pred -C--CCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHHhhhcceeecCCccee-----cc-cccchhhh
Confidence 1 13467899988887776654322100 001111122222211 0 00111110011111 10 11133567
Q ss_pred cCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC------CchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 413 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 413 ~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~------~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
..+|++|+|||||.++|+.|||+++||+||..||++|...+.. ..+|+.|++.|+.. ....+..++.+..+|.
T Consensus 280 ~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~-~~~~~~~~~~~~~~~~ 358 (395)
T PRK05732 280 ISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQD-REATIGFTDGLVRLFA 358 (395)
T ss_pred ccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 8899999999999999999999999999999999999765421 25799999999864 6777788888777775
Q ss_pred h
Q 006778 487 Y 487 (631)
Q Consensus 487 ~ 487 (631)
.
T Consensus 359 ~ 359 (395)
T PRK05732 359 N 359 (395)
T ss_pred C
Confidence 3
No 52
>PRK11445 putative oxidoreductase; Provisional
Probab=99.92 E-value=5.7e-23 Score=218.06 Aligned_cols=306 Identities=20% Similarity=0.247 Sum_probs=172.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCC---CccccccccChHhHHHHhhhhhhcCCCeeeeccCc
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG---AHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g---~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (631)
|||+||||||||+++|+.|++. ++|+|+||.+..+ ....+|+.+.+.++..+ ..+.... +........
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-------~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L-~~lgl~~-~~~~~~~~~ 72 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-------MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSF-AKDGLTL-PKDVIANPQ 72 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-------CCEEEEECCCccccccccCcCcCccCHHHHHHH-HHcCCCC-Ccceeeccc
Confidence 7999999999999999999873 7999999987643 22346788888766433 2222110 100000000
Q ss_pred ceEeeccCCcccCCCCC---CCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCC
Q 006778 185 KFWFLTKDRAFSLPSPF---SNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (631)
Q Consensus 185 ~~~~l~~~~~~~~p~~~---~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~ 261 (631)
.+.. ..+.+.... .....+.++|..|.++|.+. .+.|+++++++.++++..++++ + .|.+.+ +|+
T Consensus 73 ~~~~----~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~-----~g~ 140 (351)
T PRK11445 73 IFAV----KTIDLANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDG-Y-HVIFRA-----DGW 140 (351)
T ss_pred ccee----eEecccccchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCE-E-EEEEec-----CCc
Confidence 0000 001111000 01123469999999999885 4568999999999999877654 2 354321 121
Q ss_pred ccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCc
Q 006778 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTY 341 (631)
Q Consensus 262 ~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~~~~ 341 (631)
..+++||+||+|||.+|.+++++ +... ......++...+. .... .+... ..++... . .
T Consensus 141 -------~~~i~a~~vV~AdG~~S~vr~~l----~~~~-----~~~~~~~~~~~~~-~~~~-~~~~~-~~f~~~~-~--~ 198 (351)
T PRK11445 141 -------EQHITARYLVGADGANSMVRRHL----YPDH-----QIRKYVAIQQWFA-EKHP-VPFYS-CIFDNEI-T--D 198 (351)
T ss_pred -------EEEEEeCEEEECCCCCcHHhHHh----cCCC-----chhhEEEEEEEec-CCCC-CCCcc-eEEeccC-C--C
Confidence 13799999999999999999876 2221 1112233333222 1111 11110 1111111 1 2
Q ss_pred ceEEEEEeCCCeEEEEEEEcCCCCCCCCCcHHHHHHhhcCcchhcc-ccCCceeeecceeeccCCcccCCc--ccCCCEE
Q 006778 342 GGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPL-LEGGTVVQYGARTLNEGGLQSIPY--PVFPGGA 418 (631)
Q Consensus 342 G~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~-l~~~~~~~~~~~~i~~gg~~~~p~--~~~~~v~ 418 (631)
+..|.+|.++ .+.+|.+. +.....+.++.++. .+... +..++.+......+... ..++. ...+|++
T Consensus 199 ~~~W~~p~~~-~~~~g~~~------~~~~~~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~vv 267 (351)
T PRK11445 199 CYSWSISKDG-YFIFGGAY------PMKDGRERFETLKE--KLSAFGFQFGKPVKTEACTVLRP--SRWQDFVCGKDNAF 267 (351)
T ss_pred ceEEEeCCCC-cEEecccc------cccchHHHHHHHHH--HHHhcccccccccccccccccCc--ccccccccCCCCEE
Confidence 4578888755 44444222 11112222222211 01000 00111111100001110 01122 2358999
Q ss_pred EEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHh
Q 006778 419 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKS 469 (631)
Q Consensus 419 LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~~~~l~~Y~~~~~~~ 469 (631)
|||||||+++|++|+|++.||+||..||+.|.+.. ...++.|++.++.-
T Consensus 268 lVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~--~~~~~~y~~~~~~~ 316 (351)
T PRK11445 268 LIGEAAGFISPSSLEGISYALDSARILSEVLNKQP--EKLNTAYWRKTRKL 316 (351)
T ss_pred EEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 99999999999999999999999999999998765 45688999999863
No 53
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.92 E-value=4.2e-23 Score=230.27 Aligned_cols=334 Identities=16% Similarity=0.061 Sum_probs=186.2
Q ss_pred cCccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC-CCCcc--ccccccChHhHHHHhhhhh--------h
Q 006778 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAHI--ISGNVFEPRALNELLPQWK--------Q 172 (631)
Q Consensus 104 ~~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~-~g~~~--~~g~~i~~~~l~~l~~~~~--------~ 172 (631)
+....+|+||||||+||++|+.|++. |++|+|+||.+. ..+.. ..+..+.+.++..| ..+. .
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~------Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aL-e~LGl~~~e~l~~ 150 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKK------GFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAAL-EAIDIDVAEQVME 150 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhc------CCeEEEEeccccccccccccCcccccCHHHHHHH-HHcCcchHHHHHh
Confidence 34568999999999999999999999 999999999752 11111 01244666555322 2221 1
Q ss_pred cCCCeeeeccCcce-Eeecc-CCc--ccCCC--CCC---CCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCC
Q 006778 173 EEAPIRVPVSSDKF-WFLTK-DRA--FSLPS--PFS---NRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDAD 243 (631)
Q Consensus 173 ~~~~~~~~~~~~~~-~~l~~-~~~--~~~p~--~~~---~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~ 243 (631)
..... ...+ .+.+. ... ..++. ... ....+.++|..|.+.|.+.+.. ..++++++|+++..+++
T Consensus 151 ~g~~~-----~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~--~~i~~g~~V~~I~~~~d 223 (668)
T PLN02927 151 AGCIT-----GDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE--DVIRNESNVVDFEDSGD 223 (668)
T ss_pred hcCcc-----cceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC--CEEEcCCEEEEEEEeCC
Confidence 11110 0011 01110 000 11110 000 1124689999999999765422 23678999999987663
Q ss_pred CcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCC
Q 006778 244 NKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKH 323 (631)
Q Consensus 244 g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~ 323 (631)
.| .|.+.+ |.++.+|+||+|||.+|.+|+.+ ++... . . ......+..+....+...
T Consensus 224 -~V-tV~~~d---------------G~ti~aDlVVGADG~~S~vR~~l---~g~~~--~-~-~sG~~~~rgi~~~~p~~~ 279 (668)
T PLN02927 224 -KV-TVVLEN---------------GQRYEGDLLVGADGIWSKVRNNL---FGRSE--A-T-YSGYTCYTGIADFIPADI 279 (668)
T ss_pred -EE-EEEECC---------------CCEEEcCEEEECCCCCcHHHHHh---cCCCC--C-c-ccceEEEEEEcCCCcccc
Confidence 44 366665 67899999999999999999987 33331 0 1 111122222222211110
Q ss_pred -CCCcEEEEeccCCCCCCcceEEEEEeCCCeEEEEEEEcCCCC--C-CCCCcHHHHHHhhc-CcchhccccCCceeeecc
Q 006778 324 -NPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYH--N-PFLNPYEEFQKFKH-HPAIKPLLEGGTVVQYGA 398 (631)
Q Consensus 324 -~~g~~~h~~~~~~~~~~~G~~~~~~~~~~~~~ig~~~~~d~~--~-~~~~~~~~~~~~~~-~p~i~~~l~~~~~~~~~~ 398 (631)
..+ ...+.+ .. .....++..++.+.+......... . +.....+..+.+.. .|.+.++++.........
T Consensus 280 ~~~~-~~~~~G----~~--~~~v~~~v~~g~~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~ 352 (668)
T PLN02927 280 ESVG-YRVFLG----HK--QYFVSSDVGGGKMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILR 352 (668)
T ss_pred cccc-eEEEEc----CC--eEEEEEcCCCCeEEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCcccccee
Confidence 111 111111 11 112233444444433222211110 0 00111122233332 355555554221100001
Q ss_pred eeeccCCcccCCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC----------CchHHHHHHHHHH
Q 006778 399 RTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----------DSNMEIYWDTLQK 468 (631)
Q Consensus 399 ~~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~----------~~~l~~Y~~~~~~ 468 (631)
+.+ ......++|..+|++|+|||||.|+|..|||+++||+||..||++|.++... ..+|+.|++.|+.
T Consensus 353 ~~i--yd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~ 430 (668)
T PLN02927 353 RDI--YDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRL 430 (668)
T ss_pred eeE--EeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHH
Confidence 111 1122345788899999999999999999999999999999999999875321 3679999999997
Q ss_pred hHHHHHHHHHhccchhh
Q 006778 469 SWVWQELQRARNYRPAF 485 (631)
Q Consensus 469 ~~~~~~l~~~r~~~~~~ 485 (631)
+ +.+.+..++....++
T Consensus 431 r-v~~i~~~ar~a~~~~ 446 (668)
T PLN02927 431 R-VAIIHAMARMAAIMA 446 (668)
T ss_pred H-HHHHHHHHHHHHHHH
Confidence 6 777777766666555
No 54
>PLN02463 lycopene beta cyclase
Probab=99.92 E-value=7.6e-23 Score=221.63 Aligned_cols=291 Identities=17% Similarity=0.194 Sum_probs=171.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHH--hhhhhhcCCCeeeeccC
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL--LPQWKQEEAPIRVPVSS 183 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l--~~~~~~~~~~~~~~~~~ 183 (631)
..|||+|||||||||++|+.|++. |++|+|||+.+........+ +....+.++ ...+... ...
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~------Gl~V~liE~~~~~~~p~~~g--~w~~~l~~lgl~~~l~~~-------w~~ 91 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEA------GLSVCCIDPSPLSIWPNNYG--VWVDEFEALGLLDCLDTT-------WPG 91 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHC------CCeEEEeccCccchhccccc--hHHHHHHHCCcHHHHHhh-------CCC
Confidence 468999999999999999999998 99999999976533221111 111111111 0001000 011
Q ss_pred cceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcc
Q 006778 184 DKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKK 263 (631)
Q Consensus 184 ~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~ 263 (631)
..+ +........ .......++|..|.+.|.+++.+.|++++ ..+|+++..++++ +.|++.+
T Consensus 92 ~~v-~~~~~~~~~-----~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~d---------- 152 (447)
T PLN02463 92 AVV-YIDDGKKKD-----LDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDD---------- 152 (447)
T ss_pred cEE-EEeCCCCcc-----ccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECC----------
Confidence 111 111111111 11223458999999999999998999997 5689999877643 3577776
Q ss_pred ccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCC-------
Q 006778 264 ENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL------- 336 (631)
Q Consensus 264 ~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~------- 336 (631)
|.+++||+||+|+|.+|.+.+ + . ......+...+....++.......+.+ ..+.|..
T Consensus 153 -----G~~i~A~lVI~AdG~~s~l~~-----~--~---~~~~~g~Q~a~Gi~~ev~~~p~d~~~~-vlMD~r~~~~~~~~ 216 (447)
T PLN02463 153 -----GVKIQASLVLDATGFSRCLVQ-----Y--D---KPFNPGYQVAYGILAEVDSHPFDLDKM-LFMDWRDSHLGNNP 216 (447)
T ss_pred -----CCEEEcCEEEECcCCCcCccC-----C--C---CCCCccceeeeeEEeecCCCCcccccc-hhhhcChhhccccc
Confidence 678999999999999987543 1 1 111111112222233443333333322 1222211
Q ss_pred -----CCCCcceEEEEEeCCCeEEEEEEEcCCCCCCCCCcHHHHHHhhc---CcchhccccCCceeeecceeeccCCccc
Q 006778 337 -----DQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH---HPAIKPLLEGGTVVQYGARTLNEGGLQS 408 (631)
Q Consensus 337 -----~~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~---~p~i~~~l~~~~~~~~~~~~i~~gg~~~ 408 (631)
.....+..|++|++++++.++.+.-. ..+.+...+..+++.. +..+ ...+..+.....||.++..
T Consensus 217 ~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~--s~~~~~~~~lk~~L~~~l~~~Gi----~~~~i~~~E~~~IPmg~~~- 289 (447)
T PLN02463 217 ELRARNSKLPTFLYAMPFSSNRIFLEETSLV--ARPGLPMDDIQERMVARLRHLGI----KVKSVEEDEKCVIPMGGPL- 289 (447)
T ss_pred hhhhccCCCCceEEEEecCCCeEEEEeeeee--cCCCCCHHHHHHHHHHHHHHCCC----CcceeeeeeeeEeeCCCCC-
Confidence 11112347888999988777654211 1222221222122221 2122 1123333333457887653
Q ss_pred CCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC
Q 006778 409 IPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 455 (631)
Q Consensus 409 ~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~ 455 (631)
| ...+++++|||||++++|.+|.|+..++.+|..+|++|.+++..
T Consensus 290 -~-~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~ 334 (447)
T PLN02463 290 -P-VIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGS 334 (447)
T ss_pred -C-CCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhc
Confidence 2 34579999999999999999999999999999999999998864
No 55
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.92 E-value=3.4e-22 Score=215.25 Aligned_cols=306 Identities=17% Similarity=0.128 Sum_probs=175.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHH-hhhhhhcCCCeeeeccCcceE
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL-LPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l-~~~~~~~~~~~~~~~~~~~~~ 187 (631)
||+||||||||+++|+.|++. |++|+|||+.+.+++... ..+....+.++ +..... ... .....
T Consensus 1 DviIiGaG~AGl~~A~~la~~------g~~v~liE~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~-~~~~~ 65 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP------GLRVQLIEPHPPIPGNHT--YGVWDDDLSDLGLADCVE------HVW-PDVYE 65 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC------CCeEEEEccCCCCCCCcc--ccccHhhhhhhchhhHHh------hcC-CCceE
Confidence 899999999999999999998 999999999887664321 11111122111 000000 000 00011
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
+......... ......+++..|.+.|.+++.+.|++++ ...|+++..++++ .+.|.+.+
T Consensus 66 ~~~~~~~~~~-----~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~-~~~v~~~~-------------- 124 (388)
T TIGR01790 66 YRFPKQPRKL-----GTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVA-LSTVYCAG-------------- 124 (388)
T ss_pred EecCCcchhc-----CCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCc-eeEEEeCC--------------
Confidence 1111111111 1223458999999999999999999987 5578888766323 34577665
Q ss_pred CceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCCC------Cc
Q 006778 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK------TY 341 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~~------~~ 341 (631)
|.+++||+||+|+|.+|.+++.. .+.. .......|+ .++++...+.++.. ..+.+..... ..
T Consensus 125 -g~~~~a~~VI~A~G~~s~~~~~~---~~~~-----~~~q~~~G~--~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~ 192 (388)
T TIGR01790 125 -GQRIQARLVIDARGFGPLVQYVR---FPLN-----VGFQVAYGV--EARLSRPPHGPSSM-VIMDARVDQLAAPELKGY 192 (388)
T ss_pred -CCEEEeCEEEECCCCchhccccc---CCCC-----ceEEEEEEE--EEEEcCCCCCCCce-EEEeccccccccccccCC
Confidence 56899999999999998543211 1111 111122333 23444333333322 2233322110 11
Q ss_pred c--eEEEEEeCCCeEEEEEEEcCCCCCCCCCcHHHHHHhhcCcchhc-cccCCceeeecceeeccCCcccCCcccCCCEE
Q 006778 342 G--GSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKP-LLEGGTVVQYGARTLNEGGLQSIPYPVFPGGA 418 (631)
Q Consensus 342 G--~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~-~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~ 418 (631)
+ ..|++|.+++.+.|+...... .+...+.+..+.+.. .+.. -+...+........+|..+.. +...+|++
T Consensus 193 ~~~f~~~lP~~~~~~~v~~~~~~~--~~~~~~~~~~~~l~~--~~~~~g~~~~~i~~~~~~~iP~~~~~---~~~~~rv~ 265 (388)
T TIGR01790 193 RPTFLYAMPLGSTRVFIEETSLAD--RPALPRDRLRQRILA--RLNAQGWQIKTIEEEEWGALPVGLPG---PFLPQRVA 265 (388)
T ss_pred CCceEEEeecCCCeEEEEeccccC--CCCCCHHHHHHHHHH--HHHHcCCeeeEEEeeeeEEEecccCC---CccCCCee
Confidence 2 478889988888776432111 122222211122211 0100 011112222222345555433 23678999
Q ss_pred EEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC--CchHHHHHHHHHHh
Q 006778 419 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKS 469 (631)
Q Consensus 419 LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~--~~~l~~Y~~~~~~~ 469 (631)
+||||||.++|.+|+|++.|+++|..+|+.|.+++.. ...++.|++.++..
T Consensus 266 liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 318 (388)
T TIGR01790 266 AFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSSELATAAWDGLWPTE 318 (388)
T ss_pred eeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhchHH
Confidence 9999999999999999999999999999999888754 35677887766654
No 56
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.91 E-value=8.5e-24 Score=216.25 Aligned_cols=300 Identities=18% Similarity=0.160 Sum_probs=147.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccC--h---HhHHHHh--hhhhhcCCCeeee
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFE--P---RALNELL--PQWKQEEAPIRVP 180 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~--~---~~l~~l~--~~~~~~~~~~~~~ 180 (631)
-+|||||||++||++|+.|+|+ |++|+|+|++..+.+. |..++ . ++|+.+- +.......|+...
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~------G~~v~VlE~~e~~R~~---g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~ 73 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRK------GIDVVVLESREDPRGE---GTSINLALNGWRALKAIGLKEQIREQGIPLGGR 73 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHc------CCeEEEEeeccccccC---CcceeehhhHHHHHHHcccHHHHHHhcCcccce
Confidence 4799999999999999999999 9999999998776553 22221 1 2222111 1122222222211
Q ss_pred ccCcceEe-eccCCcccCCCCCCCCCcEE--EeHHHHHHHHHHHHHhcCcEEecCc------eEEEEEEcCCCcEEEEEe
Q 006778 181 VSSDKFWF-LTKDRAFSLPSPFSNRGNYV--ISLSQLVRWLGGKAEELGVEIYPGF------AASEILYDADNKVIGIGT 251 (631)
Q Consensus 181 ~~~~~~~~-l~~~~~~~~p~~~~~~~~~~--v~~~~l~~~L~~~a~~~Gv~i~~g~------~v~~i~~~~~g~v~gV~~ 251 (631)
+ +.. .+......++ ....+.|+ +.+..+.+.+...++.. -.|.+++ .+.++..-.... .|.+
T Consensus 74 v----~~~~~sg~~~~~~~--~~~~~~~i~r~~~r~ll~~lL~~a~~~-~~ikf~~~~~~~~~~~~~~~~~~~~--~v~l 144 (420)
T KOG2614|consen 74 V----LIHGDSGKEVSRIL--YGEPDEYILRINRRNLLQELLAEALPT-GTIKFHSNLSCTSKDVEIETLGKKL--VVHL 144 (420)
T ss_pred e----eeecCCCCeeEecc--cCCchHHHHHHHHHHHHHHHHHhhcCC-Ceeecccccccccccceeeeccccc--ceec
Confidence 1 000 0011011111 12222332 33444444444455443 2344443 222232222111 2566
Q ss_pred CCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcE---
Q 006778 252 NDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEI--- 328 (631)
Q Consensus 252 ~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~--- 328 (631)
.| |.++++|++|+|||++|.+|+.|.... +. ..+...++.+.-++........+
T Consensus 145 ~~---------------g~~~~~dlligCDGa~S~Vr~~l~~~~-p~-------~~~~~ayrg~~~~~~~~~~~~~vf~~ 201 (420)
T KOG2614|consen 145 SD---------------GTTVKGDLLIGCDGAYSKVRKWLGFKE-PR-------YDGSQAYRGLGFIPNGIPFGKKVFAI 201 (420)
T ss_pred CC---------------CcEEEeeEEEEcCchHHHHHHHhcccC-Cc-------ceeEEEEeeeeeccCCCCcccceecc
Confidence 65 789999999999999999999874332 11 12223333333333322211111
Q ss_pred --EEEeccCCCCCCcceEEEEEeCCCeEEEEEEEcCCCCCCCC---CcHHHHHHhh-cCcchhccccCCceeee-cceee
Q 006778 329 --LHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFL---NPYEEFQKFK-HHPAIKPLLEGGTVVQY-GARTL 401 (631)
Q Consensus 329 --~h~~~~~~~~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~~~---~~~~~~~~~~-~~p~i~~~l~~~~~~~~-~~~~i 401 (631)
-+..-|+..... ...|..-+....+.+.... .+|.. ...+.++.|. ..|.+.+++........ -...-
T Consensus 202 ~~~~~~~~~~~~~~---~~~y~~~~k~~t~t~~~~~--~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~ 276 (420)
T KOG2614|consen 202 YGNGLHSWPRPGFH---LIAYWFLDKSLTSTDFAPF--DEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRP 276 (420)
T ss_pred cCCeEEEcccCCce---EEEEEeecCCcccccccCc--CCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcC
Confidence 112223333211 2233333322222222111 11111 1122222232 12223333221111110 00000
Q ss_pred ccCCcccCCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC
Q 006778 402 NEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 455 (631)
Q Consensus 402 ~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~ 455 (631)
|+. .-.++....+++|+|||||+|.|+.|||+|+||+|+.+||++|.++..+
T Consensus 277 p~~--~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d 328 (420)
T KOG2614|consen 277 PWP--LISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIND 328 (420)
T ss_pred CcC--eeeeccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccc
Confidence 000 0112444558999999999999999999999999999999999998764
No 57
>PLN02697 lycopene epsilon cyclase
Probab=99.91 E-value=1.1e-21 Score=215.72 Aligned_cols=306 Identities=16% Similarity=0.163 Sum_probs=180.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHH-hhhhhhcCCCeeeeccCc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL-LPQWKQEEAPIRVPVSSD 184 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l-~~~~~~~~~~~~~~~~~~ 184 (631)
..+||+|||||||||++|+.|++. |++|+|||+....... .| +....+.++ +..... .... .
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~------Gl~V~LIe~~~p~~~n--~G--vW~~~l~~lgl~~~i~------~~w~-~ 169 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKL------GLNVGLIGPDLPFTNN--YG--VWEDEFKDLGLEDCIE------HVWR-D 169 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC------CCcEEEecCcccCCCc--cc--cchhHHHhcCcHHHHH------hhcC-C
Confidence 459999999999999999999999 9999999986443221 11 222222111 000000 0011 1
Q ss_pred ceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccc
Q 006778 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (631)
Q Consensus 185 ~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~ 264 (631)
...+......... ......++|..|.+.|.+++.+.|+++ .+.+|+++..++++ +..|.+.+
T Consensus 170 ~~v~~~~~~~~~~-----~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~d----------- 231 (529)
T PLN02697 170 TIVYLDDDKPIMI-----GRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACED----------- 231 (529)
T ss_pred cEEEecCCceeec-----cCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcC-----------
Confidence 1111111111101 111235899999999999999999998 57899998876644 32344444
Q ss_pred cccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCC--------
Q 006778 265 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL-------- 336 (631)
Q Consensus 265 ~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~-------- 336 (631)
|.+++|++||+|+|.+|. +.+ +........+.....|+ ..++....+.++.. .+|+|.-
T Consensus 232 ----G~~i~A~lVI~AdG~~S~--rl~----~~~~~~~~~~~Q~a~Gi--~ve~~~~~~d~~~~-vlMD~r~~~~~~~~~ 298 (529)
T PLN02697 232 ----GRVIPCRLATVASGAASG--RLL----QYEVGGPRVCVQTAYGV--EVEVENNPYDPSLM-VFMDYRDYFKEKVSH 298 (529)
T ss_pred ----CcEEECCEEEECCCcChh--hhh----ccccCCCCcccEEEEEE--EEEecCCCCCcchh-eeecccccccccccc
Confidence 578999999999999983 211 11100000112223333 33444333444432 3344321
Q ss_pred -CCCCcceEEEEEeCCCeEEE-EEEEcCCCCCCCCCcHH---HHHHhhcCcchhccccCCceeeecceeeccCCcccCCc
Q 006778 337 -DQKTYGGSFLYHMNDRQIAL-GLVVALNYHNPFLNPYE---EFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPY 411 (631)
Q Consensus 337 -~~~~~G~~~~~~~~~~~~~i-g~~~~~d~~~~~~~~~~---~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~ 411 (631)
..+.++..|++|++++++.| +.... ..+.+.... .+..+..+..+ ...+.++.....||.++ .+|.
T Consensus 299 ~~~~~p~FlYvlP~~~~~~~VE~T~l~---~~~~l~~~~l~~~L~~~l~~~Gi----~~~~i~~~E~g~iPm~g--~~~~ 369 (529)
T PLN02697 299 LEAEYPTFLYAMPMSSTRVFFEETCLA---SKDAMPFDLLKKRLMSRLETMGI----RILKTYEEEWSYIPVGG--SLPN 369 (529)
T ss_pred ccCCCceEEEEeecCCCeEEEEEeeec---cCCCCCHHHHHHHHHHHHHhCCC----CcceEEEEEeeeecCCC--CCcc
Confidence 11233447788999988888 43321 122222222 12222222222 22344444444678876 3344
Q ss_pred ccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCCC-------------chHHHHHHHHHHh
Q 006778 412 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED-------------SNMEIYWDTLQKS 469 (631)
Q Consensus 412 ~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~~-------------~~l~~Y~~~~~~~ 469 (631)
. .++++++||||++++|.+|.|+..+|.+|..+|++|++++..+ .+++.|++.|...
T Consensus 370 ~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e 439 (529)
T PLN02697 370 T-EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQE 439 (529)
T ss_pred c-CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHH
Confidence 4 6899999999999999999999999999999999999988643 2356777777654
No 58
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=99.90 E-value=1.5e-24 Score=175.20 Aligned_cols=83 Identities=27% Similarity=0.487 Sum_probs=72.4
Q ss_pred ccccccCCccCCCCCCceEecCCCCcccccCC--ccccce--EEEcCCCCeEEEEecCCccccccccccCCC-CCcceeC
Q 006778 545 TSLHRSNTNHEHDQPAHLRLRDPKIPELVNLP--EYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPK-QNIKWTV 619 (631)
Q Consensus 545 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~-~~i~w~~ 619 (631)
..+++ |.+++|.+.+||.|+|++.|.+|+.+ +++||| |.+.++| ++.|+|++|||||||||.||+ .+|+|+|
T Consensus 11 ~kL~~-n~~~vDe~~pHI~v~~~~~~~~~~~~~l~~aCPA~~Y~~~~~g--~l~~~yegClECGTCRvlc~~~~~i~W~Y 87 (99)
T COG2440 11 EKLSV-NRYNVDEDHPHIIVKDPDDCQECEDKPLIKACPAGCYKLIDDG--KLRFDYEGCLECGTCRVLCPHSGLIQWRY 87 (99)
T ss_pred Hhhhh-heeeccCCCCcEecCCchhhhhccchhhhhcCCHHHeeECCCC--cEEEeecCeeeccceeEecCCCcceEEec
Confidence 34444 44778788899999999999999855 899999 9888766 688889999999999999999 9999999
Q ss_pred CCCCCCCCCCC
Q 006778 620 PEGGGGPGYSV 630 (631)
Q Consensus 620 p~gg~g~~y~~ 630 (631)
|+||+||.|+.
T Consensus 88 Prgg~GI~yrf 98 (99)
T COG2440 88 PRGGFGITYRY 98 (99)
T ss_pred CCCCcCEEEec
Confidence 99999999974
No 59
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.88 E-value=1e-21 Score=227.28 Aligned_cols=324 Identities=18% Similarity=0.151 Sum_probs=178.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhc-CCCeee-eccCcce
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQE-EAPIRV-PVSSDKF 186 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~-~~~~~~-~~~~~~~ 186 (631)
+|+|||||||||++|+.|++. ++|++|+|+||.+... ....|..+.+..+..+ ..+... ...+.. ......+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~----~~G~~V~vlEr~~~~~-~~G~Gi~ls~~~l~~L-~~~~~~~~~~~~~~~~~~~~~ 75 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLL----DPAHEVTVVERNRPYD-TFGWGVVFSDATLGNL-RAADPVSAAAIGDAFNHWDDI 75 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHh----CCCCeEEEEecCCCCc-ccCcceEccHHHHHHH-HhcCHHHHHHHHHhcccCCce
Confidence 799999999999999999986 3479999999988642 2223555666554332 222110 000000 0001111
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
.+......+. ....+...++|..|.+.|.+++++.||+|+++++++++. +
T Consensus 76 ~~~~~g~~~~----~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~-------------~------------- 125 (765)
T PRK08255 76 DVHFKGRRIR----SGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQ-------------A------------- 125 (765)
T ss_pred EEEECCEEEE----ECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchh-------------h-------------
Confidence 1111111100 011122358999999999999999999999998875431 0
Q ss_pred cCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEE
Q 006778 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFL 346 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~~~~G~~~~ 346 (631)
..+.+|+||+|||.+|.+|+++...++... ......| .|- ........... ...+...+.+ ....
T Consensus 126 ---~~~~~D~VVgADG~~S~vR~~~~~~~~~~~--~~~~~~~------~w~-g~~~~~~~~~~--~~~~~~~g~~-~~~~ 190 (765)
T PRK08255 126 ---LAADADLVIASDGLNSRIRTRYADTFQPDI--DTRRCRF------VWL-GTHKVFDAFTF--AFEETEHGWF-QAHA 190 (765)
T ss_pred ---hhcCCCEEEEcCCCCHHHHHHHHhhcCCce--ecCCCce------EEe-cCCCcccceeE--EEEecCCceE-EEEE
Confidence 124789999999999999998765555432 1111111 111 11100110000 0001111111 1234
Q ss_pred EEeCCCeEEEEEEEcCC-CC---CCCCCcHHHHHHh----hcCcchhccccCCceeeecceeeccCCcccCCcccCCC--
Q 006778 347 YHMNDRQIALGLVVALN-YH---NPFLNPYEEFQKF----KHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPG-- 416 (631)
Q Consensus 347 ~~~~~~~~~ig~~~~~d-~~---~~~~~~~~~~~~~----~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~-- 416 (631)
|+..++...+.+....+ +. .+..+..+..+.+ .......+++............+ ......++|+.++
T Consensus 191 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~li~~~~~~~~~~w~~--~~~~~~~~w~~gr~~ 268 (765)
T PRK08255 191 YRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDGHPLMSNASHLRGSAWIN--FPRVVCERWVHWNRR 268 (765)
T ss_pred eeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCCCcccccccccccceeee--cceeccCCCccCCCc
Confidence 56555444332222211 00 0111222222222 11111112222111100000000 0011346788888
Q ss_pred --EEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhccc-CCCchHHHHHHHHHHhHHHHHHHHHhccchhhh
Q 006778 417 --GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL-HEDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (631)
Q Consensus 417 --v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l-~~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (631)
++|+|||||.++|..|||+++||+||..||++|.... ....+|+.|++.|+.+ ..+.++.++....+|.
T Consensus 269 ~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~al~~ye~~R~~r-~~~~~~~s~~~~~~~~ 340 (765)
T PRK08255 269 VPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHPGDLPAALAAYEEERRVE-VLRIQNAARNSTEWFE 340 (765)
T ss_pred ccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH-HHHHHHHHHHhCceee
Confidence 9999999999999999999999999999999998654 2257899999999976 8888888887766664
No 60
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.86 E-value=4.9e-20 Score=200.93 Aligned_cols=222 Identities=18% Similarity=0.218 Sum_probs=136.7
Q ss_pred CcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCC
Q 006778 205 GNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 205 ~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~ 284 (631)
-.|.++|..+.+.|.+.|++.||+++.+ .|+++..+++|.|.+|++.+ |.+++||+||+|+|.+
T Consensus 147 ~ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~---------------g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 147 YAYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDD---------------GRTIEADFFIDASGRR 210 (454)
T ss_dssp -EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETT---------------SEEEEESEEEE-SGGG
T ss_pred eeEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECC---------------CCEEEEeEEEECCCcc
Confidence 3789999999999999999999999988 48888888888898999987 7899999999999998
Q ss_pred CchhHHHHHHcCCCcccccCCcce-eeEEEEEEeecCCC-CCCCcEEEEeccCCCCCCcceEEEEEeCCCeEEEEEEEcC
Q 006778 285 GSLSEKLIKNFKLREKSHAQHQTY-ALGIKEVWEIDEGK-HNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVAL 362 (631)
Q Consensus 285 s~~~~~l~~~~g~~~~~~~~~~~~-~~g~~~~~~~~~~~-~~~g~~~h~~~~~~~~~~~G~~~~~~~~~~~~~ig~~~~~ 362 (631)
+.+.+++ ++... ........ ..++ ...++... ..+-+..+.+ ..|..|.+|+.++..+ |++...
T Consensus 211 s~L~~~~---L~~~~-~~~~~~L~~d~av--~~~~~~~~~~~~~T~~~a~-------~~GW~W~IPL~~~~~~-G~V~s~ 276 (454)
T PF04820_consen 211 SLLARKA---LKVGF-RDWSDWLPNDRAV--AVQVPNEDPPEPYTRSTAF-------EAGWIWYIPLQNRRGS-GYVYSS 276 (454)
T ss_dssp -CCCCCC---T-EEE-EEETTTCEEEEEE--EEEEE-SSCTTSSEEEEEE-------SSEEEEEEEESSEEEE-EEEEET
T ss_pred chhhHhh---hcCCC-ccccccccccEEE--EEecCcCCCCCCceeEEec-------CCceEEEccCCCcceE-EEEecc
Confidence 8876642 11111 01111110 0111 11222222 2222232222 2266799999986666 988765
Q ss_pred CCCCCCCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCCcccCCCEEEEccCCccCCCCCCcchHHHHHHH
Q 006778 363 NYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSG 442 (631)
Q Consensus 363 d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa 442 (631)
++. ++.+.++.+..+-........ ..+.. ..+. ..+.+.+|+++|||||++++|+.+.|+++|+.++
T Consensus 277 ~~~----s~~~A~~~l~~~l~~~~~~~~-~~i~~-----~~g~---~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa 343 (454)
T PF04820_consen 277 DFI----SDDEAEAELLAYLGGSPEAEP-RHIRF-----RSGR---RKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAA 343 (454)
T ss_dssp TTS----HHHHHHHHHHHHHTCHCTTSC-EEEE------S-EE---ESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHH
T ss_pred ccC----CHHHHHHHHHHhcchhhhcch-hhhcc-----cccc---hhhcccCCEEEEcchhhccCccccccHHHHHHHH
Confidence 443 344444444321111111111 22221 1111 2367778999999999999999999999999988
Q ss_pred HHHHHHHhcccCCCchHHHHHHHHHHh
Q 006778 443 MLAAEAGFGVLHEDSNMEIYWDTLQKS 469 (631)
Q Consensus 443 ~~aA~~l~~~l~~~~~l~~Y~~~~~~~ 469 (631)
..+++.|......+.+++.|++.++..
T Consensus 344 ~~l~~~l~~~~~~~~~~~~Yn~~~~~~ 370 (454)
T PF04820_consen 344 EALAEALPDDDFSPAALDRYNRRMRRE 370 (454)
T ss_dssp HHHHHTHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHH
Confidence 888888776544456678888877754
No 61
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.82 E-value=1.2e-18 Score=175.22 Aligned_cols=300 Identities=22% Similarity=0.291 Sum_probs=179.8
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCC---Ceeeec
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEA---PIRVPV 181 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~---~~~~~~ 181 (631)
+..+||+|||||.+|.++|+.|++. |.+|.||||.-.--.. .-|..+.|.....|. .++..+. .....+
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kd------GRrVhVIERDl~EPdR-ivGEllQPGG~~~L~-~LGl~Dcve~IDAQ~v 114 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKD------GRRVHVIERDLSEPDR-IVGELLQPGGYLALS-KLGLEDCVEGIDAQRV 114 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhC------CcEEEEEecccccchH-HHHHhcCcchhHHHH-HhCHHHHhhcccceEe
Confidence 4568999999999999999999999 9999999997432221 234555554432221 1111111 111122
Q ss_pred cCcceEeeccCCcccCCCCCCCC----CcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCcc
Q 006778 182 SSDKFWFLTKDRAFSLPSPFSNR----GNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (631)
Q Consensus 182 ~~~~~~~l~~~~~~~~p~~~~~~----~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~ 256 (631)
....+ ..+....++|.+..+. .+...+.+++.+.|++.+... +|++..| .|.++..++ |.|.||+..+
T Consensus 115 ~Gy~i--fk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~-gvvkGV~yk~--- 187 (509)
T KOG1298|consen 115 TGYAI--FKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEE-GVVKGVTYKN--- 187 (509)
T ss_pred eeeEE--EeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhcc-CeEEeEEEec---
Confidence 22222 2234444455443322 245567889999999988765 6888766 477887666 7889999987
Q ss_pred ccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006778 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (631)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~ 336 (631)
++|+. .+..|.++|+|||++|.+|+.|... . ......+-+|+-. + ......++...-.++-|
T Consensus 188 -k~gee-------~~~~ApLTvVCDGcfSnlRrsL~~~---~---v~~V~S~fVG~vl--~-N~~l~~p~hghvIL~~p- 249 (509)
T KOG1298|consen 188 -KEGEE-------VEAFAPLTVVCDGCFSNLRRSLCDP---K---VEEVPSYFVGLVL--K-NCRLPAPNHGHVILSKP- 249 (509)
T ss_pred -CCCce-------EEEecceEEEecchhHHHHHHhcCC---c---ccccchheeeeee--c-CCCCCCCCcceEEecCC-
Confidence 55653 6888999999999999999987321 1 1112344455431 1 11111222221222222
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEcCCCCCCCCCcHHHHHHhhc--Ccch----hccc----cCCceeeecceeeccCCc
Q 006778 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH--HPAI----KPLL----EGGTVVQYGARTLNEGGL 406 (631)
Q Consensus 337 ~~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~--~p~i----~~~l----~~~~~~~~~~~~i~~gg~ 406 (631)
.+ ..+|+.....+++.+-+..+ .-|....-+.-..+++ .|.+ ++.+ +.+.. |..|..
T Consensus 250 ---sp--il~Y~ISStEvRcl~~v~g~-~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~i-----rsmpn~-- 316 (509)
T KOG1298|consen 250 ---SP--ILVYQISSTEVRCLVDVPGQ-KLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNI-----RSMPNS-- 316 (509)
T ss_pred ---Cc--EEEEEecchheEEEEecCcc-cCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccch-----hcCccc--
Confidence 22 57899888888887666443 2222222222222222 2333 2222 22221 112211
Q ss_pred ccCC--cccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhc
Q 006778 407 QSIP--YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFG 451 (631)
Q Consensus 407 ~~~p--~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~ 451 (631)
.+| ....+|++|+|||..+-||.+|.||..|+.|..++-+.|..
T Consensus 317 -~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~p 362 (509)
T KOG1298|consen 317 -SMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKP 362 (509)
T ss_pred -cCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhcc
Confidence 222 23457999999999999999999999999999999998865
No 62
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.81 E-value=1.7e-17 Score=177.39 Aligned_cols=283 Identities=20% Similarity=0.180 Sum_probs=165.2
Q ss_pred cEEEECCCHHHHHHHHHH--HhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 109 DVVIVGAGPAGLSAAIRL--KQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~L--a~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
||||||||||||++|.+| ++. |.+|+|||+.+..+.......++....+..+-+..... .. ..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~------g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~-------w~--~~ 65 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP------GLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHR-------WS--GW 65 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC------CCEEEEEcCCccccccCCcccccccccccchHHHHhee-------cC--ce
Confidence 899999999999999999 555 99999999988763222122222222111110000110 01 11
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
.+.......... ......|++..|.+.|.+++.+ +..++.+..|++|..++++ +.|++.+
T Consensus 66 ~v~~~~~~~~~~----~~~Y~~i~~~~f~~~l~~~~~~-~~~~~~~~~V~~i~~~~~~--~~v~~~~------------- 125 (374)
T PF05834_consen 66 RVYFPDGSRILI----DYPYCMIDRADFYEFLLERAAA-GGVIRLNARVTSIEETGDG--VLVVLAD------------- 125 (374)
T ss_pred EEEeCCCceEEc----ccceEEEEHHHHHHHHHHHhhh-CCeEEEccEEEEEEecCce--EEEEECC-------------
Confidence 111111111111 1234579999999999999994 4456678999999887753 3467776
Q ss_pred cCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCCC--CcceE
Q 006778 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK--TYGGS 344 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~~--~~G~~ 344 (631)
|.+++|++||+|+|..+...+ ..+. ....|+. +++....+.++.. ..|.|-.... .+.-.
T Consensus 126 --g~~i~a~~VvDa~g~~~~~~~----~~~~---------Q~f~G~~--v~~~~~~f~~~~~-~lMD~r~~~~~~~~~F~ 187 (374)
T PF05834_consen 126 --GRTIRARVVVDARGPSSPKAR----PLGL---------QHFYGWE--VETDEPVFDPDTA-TLMDFRVPQSADGPSFL 187 (374)
T ss_pred --CCEEEeeEEEECCCccccccc----cccc---------ceeEEEE--EeccCCCCCCCce-EEEEecccCCCCCceEE
Confidence 779999999999996654111 0111 1233332 2444443444433 3445544332 23336
Q ss_pred EEEEeCCCeEEEEEEEcCCCCCCCCCcHHHHHHhhcCcchhc-cccCCceeeecceeecc--CCcccCCcccCCCEEEEc
Q 006778 345 FLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKP-LLEGGTVVQYGARTLNE--GGLQSIPYPVFPGGAIIG 421 (631)
Q Consensus 345 ~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~-~l~~~~~~~~~~~~i~~--gg~~~~p~~~~~~v~LiG 421 (631)
|++|.+++++.|....-.. .+.+...+..+++.. .++. -+...+.++.....||. ++. ++...++++.+|
T Consensus 188 Y~lP~~~~~alvE~T~fs~--~~~~~~~~~~~~l~~--~l~~~g~~~~~i~~~E~G~IPm~~~~~---~~~~~~~v~~iG 260 (374)
T PF05834_consen 188 YVLPFSEDRALVEETSFSP--RPALPEEELKARLRR--YLERLGIDDYEILEEERGVIPMTTGGF---PPRFGQRVIRIG 260 (374)
T ss_pred EEEEcCCCeEEEEEEEEcC--CCCCCHHHHHHHHHH--HHHHcCCCceeEEEeecceeecccCCC---ccccCCCeeeEE
Confidence 6778888888887554322 221222222222221 1111 11112232222234666 222 245567899999
Q ss_pred cCCccCCCCCCcchHHHHHHHHHHHHHHhc
Q 006778 422 CAAGFLNVPKIKGTHTAMKSGMLAAEAGFG 451 (631)
Q Consensus 422 DAA~~~~P~~g~G~~~Al~sa~~aA~~l~~ 451 (631)
+|+|.++|.+|.++..+++.+..+|++|.+
T Consensus 261 ~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 261 TAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred ccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999988876
No 63
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.79 E-value=9.2e-17 Score=171.16 Aligned_cols=295 Identities=18% Similarity=0.164 Sum_probs=157.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceEe
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (631)
||+|||||+|||++|+.|++. .+|++|+|+|+++..++... .++....+.+....+-. ..+....+. ..+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~----~~g~~V~lle~~~~~~~~~t--w~~~~~~~~~~~~~~~~--~~v~~~W~~--~~v 70 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA----RPDFRIRVIEAGRTIGGNHT--WSFFDSDLSDAQHAWLA--DLVQTDWPG--YEV 70 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCCCCCCCccc--ceecccccchhhhhhhh--hhheEeCCC--CEE
Confidence 899999999999999999974 24999999999886664211 11111111111000000 000001111 111
Q ss_pred eccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccC
Q 006778 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQR 268 (631)
Q Consensus 189 l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~ 268 (631)
........+ ....+.+++..|.+.|.+.+.. + |+.+.+|+++ ++++ |++.+
T Consensus 71 ~~~~~~~~l-----~~~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~~----v~l~d--------------- 121 (370)
T TIGR01789 71 RFPKYRRKL-----KTAYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DADG----VDLAP--------------- 121 (370)
T ss_pred ECcchhhhc-----CCCceEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCCE----EEECC---------------
Confidence 111111111 1235678999999998866543 3 7778899888 3322 44455
Q ss_pred ceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcE-EEEeccCCCCCCcceEEEE
Q 006778 269 GVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEI-LHTLGWPLDQKTYGGSFLY 347 (631)
Q Consensus 269 g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~-~h~~~~~~~~~~~G~~~~~ 347 (631)
|.+++|++||+|+|.+|.-... .+. ....|+ .|+.... +.++.. ...+.|+-.. |..|+|
T Consensus 122 g~~~~A~~VI~A~G~~s~~~~~----~~~---------Q~f~G~--~~r~~~p-~~~~~~~lMD~~~~q~~---g~~F~Y 182 (370)
T TIGR01789 122 GTRINARSVIDCRGFKPSAHLK----GGF---------QVFLGR--EMRLQEP-HGLENPIIMDATVDQLA---GYRFVY 182 (370)
T ss_pred CCEEEeeEEEECCCCCCCcccc----cee---------eEEEEE--EEEEcCC-CCCCccEEEeeeccCCC---CceEEE
Confidence 6789999999999988641110 111 112233 2444433 555533 2223333212 334555
Q ss_pred --EeCCCeEEEEEEEcCCCCC-CCCCcHHHHHHhhcCcchhccccCCceeeecceeeccCCcccCC-cc-cCCCEEEEcc
Q 006778 348 --HMNDRQIALGLVVALNYHN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIP-YP-VFPGGAIIGC 422 (631)
Q Consensus 348 --~~~~~~~~ig~~~~~d~~~-~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p-~~-~~~~v~LiGD 422 (631)
|.+++++.|..... .+ +.+...+.-++++.... ..-+...+.+......+|...-..++ .| ..++++++||
T Consensus 183 ~lP~~~~~~lvE~T~~---s~~~~l~~~~l~~~l~~~~~-~~g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~ 258 (370)
T TIGR01789 183 VLPLGSHDLLIEDTYY---ADDPLLDRNALSQRIDQYAR-ANGWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGL 258 (370)
T ss_pred ECcCCCCeEEEEEEec---cCCCCCCHHHHHHHHHHHHH-HhCCCceEEEEeeeeEEeeecCCCcccccccCCceeeeec
Confidence 77788887764432 23 34444333233332110 00111122222222245542110011 11 2456999999
Q ss_pred CCccCCCCCCcchHHHHHHHHHHHHHHh-cccCCCchHHHHHHH
Q 006778 423 AAGFLNVPKIKGTHTAMKSGMLAAEAGF-GVLHEDSNMEIYWDT 465 (631)
Q Consensus 423 AA~~~~P~~g~G~~~Al~sa~~aA~~l~-~~l~~~~~l~~Y~~~ 465 (631)
|||+++|.+|+|++.|++++..+|+.+. .......++..|...
T Consensus 259 AAg~~~P~tGyg~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~ 302 (370)
T TIGR01789 259 RAGLTHPTTGYSLPVAVENADALAAQPDLSSEQLAAFIDSRARR 302 (370)
T ss_pred ccccccccccccHHHHHHHHHHHHhccCcCccchhhhhhHHHHH
Confidence 9999999999999999999999998874 211112335556654
No 64
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=99.76 E-value=3.1e-19 Score=147.46 Aligned_cols=76 Identities=20% Similarity=0.425 Sum_probs=62.3
Q ss_pred CCccCCCCCCceEecCCCCcccccCC--ccccce--EEEcCCCCeEEEEecCCccccccccccCCCC-CcceeCCCCCCC
Q 006778 551 NTNHEHDQPAHLRLRDPKIPELVNLP--EYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQ-NIKWTVPEGGGG 625 (631)
Q Consensus 551 ~~~~~~~~~~h~~~~~~~~~~~~~~~--~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~-~i~w~~p~gg~g 625 (631)
++++.+++.+||+|+++. .+|..+ +.+||+ |..+++| .+.||+++|++||+|.+.||.. +|+|+||+||+|
T Consensus 14 ~~y~vd~~~~HI~i~~~~--~~~~~k~C~~aCPagA~~~~e~G--~V~vd~e~CigCg~C~~~C~~~~~~~W~yPrgg~G 89 (95)
T PRK15449 14 NKFNVDEEHPHIVVKADA--DKQALELLVKACPAGLYKKQDDG--SVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFG 89 (95)
T ss_pred ceeECCCCCCcEEEcCCC--CchhhhHHHHHCCHhhcEeCCCC--CEEEcCCCCCcchhhhhhcCCCCccCccCCCCCcC
Confidence 455567788999998754 335555 889999 7666666 6889999999999999999877 469999999999
Q ss_pred CCCCC
Q 006778 626 PGYSV 630 (631)
Q Consensus 626 ~~y~~ 630 (631)
|+|+.
T Consensus 90 V~yr~ 94 (95)
T PRK15449 90 VEFRY 94 (95)
T ss_pred EEEec
Confidence 99974
No 65
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.72 E-value=4e-16 Score=158.82 Aligned_cols=332 Identities=18% Similarity=0.178 Sum_probs=183.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeC--CCCCCccccc------cccChH--hHHHHhhhhhhcCC
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG--AEVGAHIISG------NVFEPR--ALNELLPQWKQEEA 175 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~--~~~g~~~~~g------~~i~~~--~l~~l~~~~~~~~~ 175 (631)
..||||||||||+|++.|..|... +.....+|.++|-+ +.++.--.+. ..+++. .+-+.+..|.....
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~sn--p~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~ 112 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSN--PPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFH 112 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccC--CccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhh
Confidence 479999999999999999999843 44457899999988 4444321111 112222 23344455654321
Q ss_pred CeeeeccCcceEeeccCCcccCCCC-CCCCCcEEEeHHHHHHHHHH-HH--HhcCcEEecCceEEEEEE------cCCCc
Q 006778 176 PIRVPVSSDKFWFLTKDRAFSLPSP-FSNRGNYVISLSQLVRWLGG-KA--EELGVEIYPGFAASEILY------DADNK 245 (631)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~p~~-~~~~~~~~v~~~~l~~~L~~-~a--~~~Gv~i~~g~~v~~i~~------~~~g~ 245 (631)
.....+.....+.--....+.+... +...-++++....+.-.|.. ++ +...|+|...+++.++.. ++++.
T Consensus 113 ~R~~~~~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~ 192 (481)
T KOG3855|consen 113 DRYQKFSRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGM 192 (481)
T ss_pred hccccccceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcc
Confidence 1111111111111111122222211 11122577777777777773 33 235799999999888765 23455
Q ss_pred EEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCC
Q 006778 246 VIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNP 325 (631)
Q Consensus 246 v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 325 (631)
...+.+.| |..+..|++|+|+|.+|.+|+.. +++.. ......++ +-....+..+....
T Consensus 193 ~~~i~l~d---------------g~~~~~~LLigAdg~Ns~vR~~s----nid~~-~~ny~~ha--vVAtl~l~~~~~~~ 250 (481)
T KOG3855|consen 193 WFHITLTD---------------GINFATDLLIGADGFNSVVRKAS----NIDVA-SWNYDQHA--VVATLKLEEEAILN 250 (481)
T ss_pred eEEEEecc---------------Cceeeeceeeccccccchhhhhc----CCCcc-ccccccee--eeEEEEeccccccc
Confidence 66677777 78999999999999999988853 56541 22222222 22222333333333
Q ss_pred CcEEEEeccCCCCCCcceEEEEEeCCCeEEEEEEEcCCCCCCCC-CcHHHHHHh------hcCcc-------------h-
Q 006778 326 GEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFL-NPYEEFQKF------KHHPA-------------I- 384 (631)
Q Consensus 326 g~~~h~~~~~~~~~~~G~~~~~~~~~~~~~ig~~~~~d~~~~~~-~~~~~~~~~------~~~p~-------------i- 384 (631)
+..+|.| +.. |+.-+.|+.++..++.|.....-..... -|.+.|-.+ ...|. .
T Consensus 251 ~~AwQRF---lP~---GpiAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~ 324 (481)
T KOG3855|consen 251 GVAWQRF---LPT---GPIALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRA 324 (481)
T ss_pred chhHHhc---CCC---CceeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchh
Confidence 4333332 111 4455778888777777765432100000 011111110 00000 0
Q ss_pred ---hccccCCce---eee---------cceeeccCCcccCCcccCCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHH
Q 006778 385 ---KPLLEGGTV---VQY---------GARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAG 449 (631)
Q Consensus 385 ---~~~l~~~~~---~~~---------~~~~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l 449 (631)
..++...++ +.+ ..|+.-..|+.....+..+|+.|||||||.++|..|||+|+++.|...|.+++
T Consensus 325 ~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL 404 (481)
T KOG3855|consen 325 QLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSL 404 (481)
T ss_pred hccHHHHhccCcccccccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHH
Confidence 011110000 011 11111224444555788899999999999999999999999999999999999
Q ss_pred hcccCCC------chHHHHHHHHH
Q 006778 450 FGVLHED------SNMEIYWDTLQ 467 (631)
Q Consensus 450 ~~~l~~~------~~l~~Y~~~~~ 467 (631)
.+++..+ ..|+.|+..+.
T Consensus 405 ~~ai~~g~DlgS~~~L~~y~~~~~ 428 (481)
T KOG3855|consen 405 SEAIVSGLDLGSVEHLEPYERERL 428 (481)
T ss_pred HHHHHhcccccchhhhhHHHHHHh
Confidence 8876542 44667775554
No 66
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.68 E-value=1.5e-15 Score=153.24 Aligned_cols=156 Identities=24% Similarity=0.379 Sum_probs=112.4
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChH-hH----HHHhhhhhhcCCCeee
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPR-AL----NELLPQWKQEEAPIRV 179 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~-~l----~~l~~~~~~~~~~~~~ 179 (631)
..++||+|||||||||++|+.|++. |++|+|+||...+|+....|+.+.+. .+ .+++..+ .
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~------G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~---g----- 88 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKA------GLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEF---G----- 88 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhC------CCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHC---C-----
Confidence 4579999999999999999999998 99999999998887755444322211 11 1111111 1
Q ss_pred eccCcceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccC
Q 006778 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (631)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~ 259 (631)
++......+.|.+++..+...|.+++.+.|++|+++++|.++..++++++.+|.+.+..+..+
T Consensus 89 -----------------v~~~~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~ 151 (257)
T PRK04176 89 -----------------IRYKEVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMA 151 (257)
T ss_pred -----------------CCceeecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEcccccccc
Confidence 110111233567889999999999999999999999999999887655788888765322233
Q ss_pred CCccccccCceEEEcCEEEEecCCCCchhHHHHHHc
Q 006778 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNF 295 (631)
Q Consensus 260 G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~ 295 (631)
|..+ +..+++||+||+|||.++.+.+.+.++.
T Consensus 152 g~~~----~~~~i~Ak~VI~ATG~~a~v~~~l~~~~ 183 (257)
T PRK04176 152 GLHV----DPLTIEAKAVVDATGHDAEVVSVLARKG 183 (257)
T ss_pred CCCC----CcEEEEcCEEEEEeCCCcHHHHHHHHHc
Confidence 3211 1368999999999999999998886554
No 67
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.66 E-value=2.2e-15 Score=151.57 Aligned_cols=164 Identities=26% Similarity=0.382 Sum_probs=115.5
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCc
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (631)
..++||+|||||||||++|+.|++. |++|+|+||...+|+....++.+-+....+ ..
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~------G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~-----------------~~ 75 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKN------GLKVCVLERSLAFGGGSWGGGMLFSKIVVE-----------------KP 75 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCccccCCCcceeccccc-----------------ch
Confidence 3579999999999999999999999 999999999998887654443322111000 00
Q ss_pred ceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCC-cEEEEEeCCCccccCCCcc
Q 006778 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADN-KVIGIGTNDMGIAKDGSKK 263 (631)
Q Consensus 185 ~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g-~v~gV~~~d~g~~~~G~~~ 263 (631)
...++. . +.++......+.+..++..+.+.|.+++.+.|+++++++.|.++..++++ +|.||.++...+..+|...
T Consensus 76 ~~~~l~-~--~gi~~~~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~ 152 (254)
T TIGR00292 76 AHEILD-E--FGIRYEDEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHV 152 (254)
T ss_pred HHHHHH-H--CCCCeeeccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCC
Confidence 000110 0 01111111223456688999999999999999999999999999887653 6889888654333333211
Q ss_pred ccccCceEEEcCEEEEecCCCCchhHHHHHHcCCC
Q 006778 264 ENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (631)
Q Consensus 264 ~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~ 298 (631)
+..+++|++||+|||..+.+.+.+.+++++.
T Consensus 153 ----d~~~i~Ak~VVdATG~~a~v~~~l~~~~~~~ 183 (254)
T TIGR00292 153 ----DPLTQRSRVVVDATGHDAEIVAVCAKKIVLE 183 (254)
T ss_pred ----CCEEEEcCEEEEeecCCchHHHHHHHHcCcc
Confidence 1368999999999999999999998888766
No 68
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.61 E-value=2.4e-15 Score=142.64 Aligned_cols=157 Identities=27% Similarity=0.435 Sum_probs=106.3
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHh-----HHHHhhhhhhcCCCeee
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRA-----LNELLPQWKQEEAPIRV 179 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~-----l~~l~~~~~~~~~~~~~ 179 (631)
..++||+||||||+||+||+.|++. |++|+|+|+...+|+....|+.+-++. ...+++++.
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~------g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elg-------- 80 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKA------GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELG-------- 80 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHH------TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT--------
T ss_pred hccCCEEEECCChhHHHHHHHHHHC------CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCC--------
Confidence 4579999999999999999999999 999999999999988766555432211 112222221
Q ss_pred eccCcceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccC
Q 006778 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (631)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~ 259 (631)
++......+.|+.+...+...|...+.+.|++|+..+.|.++...++++|.||.++-.-+...
T Consensus 81 -----------------i~y~~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~ 143 (230)
T PF01946_consen 81 -----------------IPYEEYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMA 143 (230)
T ss_dssp --------------------EE-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT
T ss_pred -----------------ceeEEeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHh
Confidence 111112234667788999999999999999999999999999988767899998875444344
Q ss_pred CCccccccCceEEEcCEEEEecCCCCchhHHHHHHcC
Q 006778 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFK 296 (631)
Q Consensus 260 G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g 296 (631)
|-+. +-.+++|++||.|||.-+.+.+.+.++..
T Consensus 144 glHv----DPl~i~ak~ViDaTGHda~v~~~~~kk~~ 176 (230)
T PF01946_consen 144 GLHV----DPLTIRAKVVIDATGHDAEVVRVLAKKLK 176 (230)
T ss_dssp --T-----B-EEEEESEEEE---SSSSSTSHHHHHHH
T ss_pred hcCC----CcceEEEeEEEeCCCCchHHHHHHHHHhh
Confidence 4321 23789999999999999988777766653
No 69
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.58 E-value=4.5e-14 Score=132.89 Aligned_cols=155 Identities=25% Similarity=0.422 Sum_probs=116.1
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChH-----hHHHHhhhhhhcCCCeee
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPR-----ALNELLPQWKQEEAPIRV 179 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~-----~l~~l~~~~~~~~~~~~~ 179 (631)
..+.||+||||||+||+||+.|++. |++|+|+||+-.+|+.+.-|+.+-++ ...++++++.
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~------g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~g-------- 93 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKA------GLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFG-------- 93 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhC------CceEEEEEeecccCCcccccccccceeeecchHHHHHHHhC--------
Confidence 3467999999999999999999999 99999999999999877666554322 1222332221
Q ss_pred eccCcceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccC
Q 006778 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (631)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~ 259 (631)
++......+-|+.+...+...|...+.+.|++|+.++.|.++...++.+|.||.++-.-+...
T Consensus 94 -----------------I~ye~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~ 156 (262)
T COG1635 94 -----------------IRYEEEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMA 156 (262)
T ss_pred -----------------CcceecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhc
Confidence 222223344677888999999999999999999999999999988865788988775333333
Q ss_pred CCccccccCceEEEcCEEEEecCCCCchhHHHHHH
Q 006778 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKN 294 (631)
Q Consensus 260 G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~ 294 (631)
|.. .+-.+++|++||.|||.-..+.+.+.++
T Consensus 157 ~lh----vDPl~i~a~~VvDaTGHda~v~~~~~kr 187 (262)
T COG1635 157 GLH----VDPLTIRAKAVVDATGHDAEVVSFLAKR 187 (262)
T ss_pred ccc----cCcceeeEEEEEeCCCCchHHHHHHHHh
Confidence 432 1236899999999999988777765443
No 70
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.51 E-value=2.4e-13 Score=139.71 Aligned_cols=163 Identities=25% Similarity=0.328 Sum_probs=108.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-ccc----ccChHhHHHHhhhhhhcCC----C
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGN----VFEPRALNELLPQWKQEEA----P 176 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g~----~i~~~~l~~l~~~~~~~~~----~ 176 (631)
+.+||+|||||||||.||+.+++. |.+|+|||+++.+|.... +|+ ..+....++++........ .
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~------G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sa 75 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKA------GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSA 75 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhc------CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHH
Confidence 468999999999999999999999 999999999999876552 331 1122223333322221110 0
Q ss_pred eeee--------ccCcceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEE
Q 006778 177 IRVP--------VSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIG 248 (631)
Q Consensus 177 ~~~~--------~~~~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~g 248 (631)
+... +....+.+.....+.-||.. -.-..+.+.|..++++.||+|+++++|.++..+++ ...
T Consensus 76 l~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~s--------dkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--~f~ 145 (408)
T COG2081 76 LARFTPEDFIDWVEGLGIALKEEDLGRMFPDS--------DKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS--GFR 145 (408)
T ss_pred HHhCCHHHHHHHHHhcCCeeEEccCceecCCc--------cchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc--eEE
Confidence 1111 11112222222222223321 23478899999999999999999999999998873 335
Q ss_pred EEeCCCccccCCCccccccCceEEEcCEEEEecCCCCc-------hhHHHHHHcCCCc
Q 006778 249 IGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS-------LSEKLIKNFKLRE 299 (631)
Q Consensus 249 V~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~-------~~~~l~~~~g~~~ 299 (631)
|.+.+ |.+++||.+|+|+|+.|. ..-++++++|++.
T Consensus 146 l~t~~---------------g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 146 LDTSS---------------GETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred EEcCC---------------CCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 77776 668999999999996653 2456677777775
No 71
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.48 E-value=3.2e-12 Score=135.36 Aligned_cols=162 Identities=30% Similarity=0.450 Sum_probs=101.7
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc--ccccccChH-------hHH-------HHhhhhhh
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI--ISGNVFEPR-------ALN-------ELLPQWKQ 172 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~--~~g~~i~~~-------~l~-------~l~~~~~~ 172 (631)
||+|||||++|+++|+.|++. |++|+|+|++ .++... .+++.+.+. .+. +.++.|..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~------G~~V~l~e~~-~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 73 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR------GHSVTLLERG-DIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAE 73 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT------TSEEEEEESS-STTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHC------CCeEEEEeec-cccccccccccccccccccccccccccchhhhhccchhhhhh
Confidence 899999999999999999999 9999999999 444322 233333221 111 12223311
Q ss_pred c-CCCeeeeccCcceE--------------------------eeccCC-cccCCCCC-------CCCCcEEEeHHHHHHH
Q 006778 173 E-EAPIRVPVSSDKFW--------------------------FLTKDR-AFSLPSPF-------SNRGNYVISLSQLVRW 217 (631)
Q Consensus 173 ~-~~~~~~~~~~~~~~--------------------------~l~~~~-~~~~p~~~-------~~~~~~~v~~~~l~~~ 217 (631)
. ..+... .....+. +++... .-.+|... .......++...+.+.
T Consensus 74 ~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~ 152 (358)
T PF01266_consen 74 EYGIPVGF-RPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQA 152 (358)
T ss_dssp HTTSSCEE-EECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHH
T ss_pred hcCccccc-ccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhh
Confidence 1 111110 0001111 111000 00011111 1133566899999999
Q ss_pred HHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCC
Q 006778 218 LGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKL 297 (631)
Q Consensus 218 L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~ 297 (631)
|.+.+++.|++|+.+++|+++..++ +.+.+|.+.+ |. ++||.||+|+|.++ ..+.+..+.
T Consensus 153 l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~gv~~~~---------------g~-i~ad~vV~a~G~~s---~~l~~~~~~ 212 (358)
T PF01266_consen 153 LAAEAQRAGVEIRTGTEVTSIDVDG-GRVTGVRTSD---------------GE-IRADRVVLAAGAWS---PQLLPLLGL 212 (358)
T ss_dssp HHHHHHHTT-EEEESEEEEEEEEET-TEEEEEEETT---------------EE-EEECEEEE--GGGH---HHHHHTTTT
T ss_pred hHHHHHHhhhhccccccccchhhcc-cccccccccc---------------cc-cccceeEecccccc---eeeeecccc
Confidence 9999999999999999999999887 5677899987 55 99999999999875 456666666
Q ss_pred C
Q 006778 298 R 298 (631)
Q Consensus 298 ~ 298 (631)
.
T Consensus 213 ~ 213 (358)
T PF01266_consen 213 D 213 (358)
T ss_dssp S
T ss_pred c
Confidence 4
No 72
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.46 E-value=1.6e-11 Score=133.67 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=56.2
Q ss_pred EEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch
Q 006778 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 208 ~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
.++...+.+.|.+.+++.|++|+.+++|+++..++ +.+++|++.+ .++.||.||+|+|.++
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~~----------------~~~~a~~VV~a~G~~~-- 257 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTGG----------------GVITADAYVVALGSYS-- 257 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeCC----------------cEEeCCEEEECCCcch--
Confidence 35667889999999999999999999999998765 4555677654 4789999999999987
Q ss_pred hHHHHHHcCCC
Q 006778 288 SEKLIKNFKLR 298 (631)
Q Consensus 288 ~~~l~~~~g~~ 298 (631)
..+.+..+++
T Consensus 258 -~~l~~~~g~~ 267 (416)
T PRK00711 258 -TALLKPLGVD 267 (416)
T ss_pred -HHHHHHhCCC
Confidence 3555555554
No 73
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.43 E-value=3.9e-11 Score=130.21 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=56.0
Q ss_pred EEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch
Q 006778 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 208 ~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
.++...+...|.+.+++.|++++.+++|+++...+++.+++|.+.+ | ++.|+.||+|+|+++.
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~---------------g-~i~a~~vVvaagg~~~- 241 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR---------------G-FIGAKKVGVAVAGHSS- 241 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC---------------c-eEECCEEEECCChhhH-
Confidence 3566778888999999999999999999999765446676788775 4 6999999999998864
Q ss_pred hHHHHHHcCCC
Q 006778 288 SEKLIKNFKLR 298 (631)
Q Consensus 288 ~~~l~~~~g~~ 298 (631)
.+.+..++.
T Consensus 242 --~l~~~~g~~ 250 (407)
T TIGR01373 242 --VVAAMAGFR 250 (407)
T ss_pred --HHHHHcCCC
Confidence 344445554
No 74
>PLN02661 Putative thiazole synthesis
Probab=99.41 E-value=1.2e-11 Score=128.07 Aligned_cols=151 Identities=23% Similarity=0.340 Sum_probs=95.0
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccc-cChH----hHHHHhhhhhhcCCCeee
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNV-FEPR----ALNELLPQWKQEEAPIRV 179 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~-i~~~----~l~~l~~~~~~~~~~~~~ 179 (631)
..++||+|||||++|+++|+.|++. +|++|+||||+..+|+....|+. ++.. ...+++..+.
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~-----~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElG-------- 156 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKN-----PNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELG-------- 156 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHc-----CCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcC--------
Confidence 4578999999999999999999974 38999999999887764333322 2111 1111111111
Q ss_pred eccCcceEeeccCCcccCCCCCCCCCcEEE--eHHHHHHHHHHHHHh-cCcEEecCceEEEEEEcCCCcEEEEEeCCCcc
Q 006778 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVI--SLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (631)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~v--~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~ 256 (631)
+.+. ..++|.+ +-..+.+.|.+++.+ .|++++.++.+.+++.++ +++.||.++...+
T Consensus 157 ---------------V~fd----~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-grVaGVVvnw~~v 216 (357)
T PLN02661 157 ---------------VPYD----EQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-DRVGGVVTNWALV 216 (357)
T ss_pred ---------------CCcc----cCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-CEEEEEEeecchh
Confidence 1111 0112222 334556677776655 689999999999999875 6788988654322
Q ss_pred ccCCCccccccCceEEEcCEEEEecCCCCchhH
Q 006778 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSE 289 (631)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~ 289 (631)
..++....-.+ ...++||.||+|||..+.+..
T Consensus 217 ~~~~~~~s~~d-p~~I~AkaVVlATGh~g~~ga 248 (357)
T PLN02661 217 AQNHDTQSCMD-PNVMEAKVVVSSCGHDGPFGA 248 (357)
T ss_pred hhccCCCCccc-eeEEECCEEEEcCCCCCcchh
Confidence 22222100001 147999999999998775444
No 75
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.40 E-value=1.6e-12 Score=139.31 Aligned_cols=157 Identities=29% Similarity=0.436 Sum_probs=85.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-cc--cc------cCh-----------HhHHHHh
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SG--NV------FEP-----------RALNELL 167 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g--~~------i~~-----------~~l~~l~ 167 (631)
|||+|||||||||.||+.|++. |++|+|+||++.+|.... +| .| .++ +.+...+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~------g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l 74 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK------GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSAL 74 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT------T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHH
Confidence 7999999999999999999999 999999999998875432 11 11 111 1111111
Q ss_pred hhhhhcCCCeeeeccCcceEeeccCCcccCCCCCCCCC-cEEE--eHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCC
Q 006778 168 PQWKQEEAPIRVPVSSDKFWFLTKDRAFSLPSPFSNRG-NYVI--SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADN 244 (631)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~-~~~v--~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g 244 (631)
..+.. .+.+.|+.+ .++ +......+ -|.. ....+.+.|.+.+++.||+|+++++|.+++.+++
T Consensus 75 ~~f~~----------~d~~~ff~~-~Gv--~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~- 140 (409)
T PF03486_consen 75 KRFSP----------EDLIAFFEE-LGV--PTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED- 140 (409)
T ss_dssp HHS-H----------HHHHHHHHH-TT----EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-
T ss_pred hcCCH----------HHHHHHHHh-cCC--eEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-
Confidence 11110 000011110 000 00000011 1222 3578889999999999999999999999988774
Q ss_pred cEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch-------hHHHHHHcCCCc
Q 006778 245 KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL-------SEKLIKNFKLRE 299 (631)
Q Consensus 245 ~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~-------~~~l~~~~g~~~ 299 (631)
.+..|.+.+ +.++.||.||+|+|+.|.- .-.+++++|+..
T Consensus 141 ~~f~v~~~~---------------~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~i 187 (409)
T PF03486_consen 141 GVFGVKTKN---------------GGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHTI 187 (409)
T ss_dssp EEEEEEETT---------------TEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--E
T ss_pred ceeEeeccC---------------cccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCcE
Confidence 456788843 5899999999999986632 245677788774
No 76
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.39 E-value=4e-12 Score=140.35 Aligned_cols=197 Identities=22% Similarity=0.258 Sum_probs=116.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC--CCCcc-ccccc--cCh---------HhHHHHhhhhh
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE--VGAHI-ISGNV--FEP---------RALNELLPQWK 171 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~--~g~~~-~~g~~--i~~---------~~l~~l~~~~~ 171 (631)
.++||||||+|+|||+||+.|++. |++|+||||.+. .|+.+ .+++. ... ....+++.++.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~------G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREA------GASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLL 76 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHH
Confidence 468999999999999999999999 999999999874 45433 22221 100 01112222222
Q ss_pred hcCC----Ce--ee--eccCcceEeeccCCcccCCCC----CC-CCCc--EEEeHHHHHHHHHHHHHhcCcEEecCceEE
Q 006778 172 QEEA----PI--RV--PVSSDKFWFLTKDRAFSLPSP----FS-NRGN--YVISLSQLVRWLGGKAEELGVEIYPGFAAS 236 (631)
Q Consensus 172 ~~~~----~~--~~--~~~~~~~~~l~~~~~~~~p~~----~~-~~~~--~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~ 236 (631)
.... +. .. ....+.+.|+.. .++.+... .. .... +.-....+...|.+.+++.|++|+++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~s~~~~~wl~~-~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~ 155 (466)
T PRK08274 77 RVTGGRTDEALARLLIRESSDCRDWMRK-HGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVT 155 (466)
T ss_pred HhhCCCCCHHHHHHHHHcCHHHHHHHHh-CCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 1110 00 00 000111112211 11111000 00 0001 111135788889999999999999999999
Q ss_pred EEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcc---cccCCcceeeEEE
Q 006778 237 EILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREK---SHAQHQTYALGIK 313 (631)
Q Consensus 237 ~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~---~~~~~~~~~~g~~ 313 (631)
+++.++ ++|++|.+.+ .+|+ ...++|+.||+|+|.++.....+.+.++.... ....+...|.|++
T Consensus 156 ~l~~~~-g~v~gv~~~~----~~g~-------~~~i~a~~VIlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ 223 (466)
T PRK08274 156 ALELDD-GRFVGARAGS----AAGG-------AERIRAKAVVLAAGGFESNREWLREAWGQPADNFLVRGTPYNQGDLLK 223 (466)
T ss_pred EEEecC-CeEEEEEEEc----cCCc-------eEEEECCEEEECCCCCCCCHHHHHhhcCCchhhceecCCCCcccHHHH
Confidence 998764 7888887642 2333 35789999999999998866655544443210 1234556788887
Q ss_pred EEEeecCC
Q 006778 314 EVWEIDEG 321 (631)
Q Consensus 314 ~~~~~~~~ 321 (631)
+.+++...
T Consensus 224 ma~~~Ga~ 231 (466)
T PRK08274 224 ALLDAGAD 231 (466)
T ss_pred HHHHcCCC
Confidence 77666654
No 77
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.38 E-value=3.5e-11 Score=127.89 Aligned_cols=171 Identities=27% Similarity=0.332 Sum_probs=110.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcccc--cccc------ChHhHH--------HHhhh
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS--GNVF------EPRALN--------ELLPQ 169 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~--g~~i------~~~~l~--------~l~~~ 169 (631)
+.+||||||||+.|+++|+.|+++ .|+++|+|+||...++.++.+ .+++ .+..+. +..-.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~----~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~ 77 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEY----EPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFA 77 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHh----CCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHH
Confidence 469999999999999999999999 334999999999988765532 1222 111110 01111
Q ss_pred hh-hcCCCe------eeeccCcce------------------EeeccCCcccC-CCCC-------CCCCcEEEeHHHHHH
Q 006778 170 WK-QEEAPI------RVPVSSDKF------------------WFLTKDRAFSL-PSPF-------SNRGNYVISLSQLVR 216 (631)
Q Consensus 170 ~~-~~~~~~------~~~~~~~~~------------------~~l~~~~~~~~-p~~~-------~~~~~~~v~~~~l~~ 216 (631)
|. +.+.+. ......+.+ ..++...-..+ |..+ .-..+.+|+...+..
T Consensus 78 ~~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~ 157 (429)
T COG0579 78 ICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTR 157 (429)
T ss_pred HHHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHH
Confidence 11 111111 111111111 11111111111 1111 123466789999999
Q ss_pred HHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceE-EEcCEEEEecCCCCchhHHHHHHc
Q 006778 217 WLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVE-LRGRITLLAEGCRGSLSEKLIKNF 295 (631)
Q Consensus 217 ~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~-i~a~~vV~A~G~~s~~~~~l~~~~ 295 (631)
.|.+.++++|++++++++|++|...++| ++.+.+.+ |.+ ++|+.||.|.|..+ ..|++..
T Consensus 158 ~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~---------------g~~~~~ak~Vin~AGl~A---d~la~~~ 218 (429)
T COG0579 158 ALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSN---------------GEETLEAKFVINAAGLYA---DPLAQMA 218 (429)
T ss_pred HHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecC---------------CcEEEEeeEEEECCchhH---HHHHHHh
Confidence 9999999999999999999999998876 44466554 444 99999999999886 5777788
Q ss_pred CCCc
Q 006778 296 KLRE 299 (631)
Q Consensus 296 g~~~ 299 (631)
|+..
T Consensus 219 g~~~ 222 (429)
T COG0579 219 GIPE 222 (429)
T ss_pred CCCc
Confidence 8874
No 78
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.37 E-value=2.7e-10 Score=123.79 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=52.5
Q ss_pred EeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchh
Q 006778 209 ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (631)
Q Consensus 209 v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~ 288 (631)
++...+...|.+.+++.|++|+.+++|+++..++ +.+ .|.+.+ .++.+ +.+++||.||+|+|.++.
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~-~~~-~v~~~~----~~~~~------~~~i~a~~vV~a~G~~s~-- 259 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG-GGV-VLTVQP----SAEHP------SRTLEFDGVVVCAGVGSR-- 259 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEE-EEEEEc----CCCCc------cceEecCEEEECCCcChH--
Confidence 4566888889999999999999999999998765 333 344332 00000 247899999999999973
Q ss_pred HHHHHHcCCC
Q 006778 289 EKLIKNFKLR 298 (631)
Q Consensus 289 ~~l~~~~g~~ 298 (631)
.+.+.++..
T Consensus 260 -~l~~~~~~~ 268 (410)
T PRK12409 260 -ALAAMLGDR 268 (410)
T ss_pred -HHHHHhCCC
Confidence 444444543
No 79
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.35 E-value=1.5e-10 Score=124.08 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=49.6
Q ss_pred EEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCC
Q 006778 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 208 ~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
.++...+...+.+.+.+.|++++.+++|+++..+++ .+ .|.+.+ | ++.||.||+|+|.++
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~-~v~~~~---------------g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGD-GV-TVTTAD---------------G-TYEAKKLVVSAGAWV 204 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCC-eE-EEEeCC---------------C-EEEeeEEEEecCcch
Confidence 467788888888888889999999999999988653 33 577665 4 789999999999986
No 80
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.35 E-value=2.3e-10 Score=128.29 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=60.1
Q ss_pred EEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCc
Q 006778 207 YVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 207 ~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
..++...+...+...|.++|++++++++|+++..++ +++++|++.|. .+|+ +.+|+||.||.|+|.|+
T Consensus 144 g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~d~---~~g~-------~~~i~A~~VVnAaG~wa- 211 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREG-DTVCGVRVRDH---LTGE-------TQEIHAPVVVNAAGIWG- 211 (546)
T ss_pred cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcC-CeEEEEEEEEc---CCCc-------EEEEECCEEEECCChhH-
Confidence 357889999999999999999999999999998765 56778876541 1222 25799999999999996
Q ss_pred hhHHHHHHcCCC
Q 006778 287 LSEKLIKNFKLR 298 (631)
Q Consensus 287 ~~~~l~~~~g~~ 298 (631)
.++.+..+++
T Consensus 212 --~~l~~~~g~~ 221 (546)
T PRK11101 212 --QHIAEYADLR 221 (546)
T ss_pred --HHHHHhcCCC
Confidence 4555555544
No 81
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.34 E-value=5.7e-11 Score=130.82 Aligned_cols=62 Identities=26% Similarity=0.201 Sum_probs=51.0
Q ss_pred cEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCC
Q 006778 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
...++...+.+.|.+.+++.|++|+.+++|+++... ..+.|++.+ | +++||.||+|+|+++
T Consensus 177 ~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~---~~~~v~t~~---------------g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 177 AASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEG---QPAVVRTPD---------------G-QVTADKVVLALNAWM 237 (460)
T ss_pred CeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeC---CceEEEeCC---------------c-EEECCEEEEcccccc
Confidence 456788999999999999999999999999998742 233577664 4 689999999999986
Q ss_pred c
Q 006778 286 S 286 (631)
Q Consensus 286 ~ 286 (631)
.
T Consensus 238 ~ 238 (460)
T TIGR03329 238 A 238 (460)
T ss_pred c
Confidence 3
No 82
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.33 E-value=1.1e-11 Score=135.96 Aligned_cols=194 Identities=23% Similarity=0.279 Sum_probs=112.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCC-CeEEEEeeCCCCCCcc-ccccccC---hH---------hHHHHhhhhhhcC
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGAEVGAHI-ISGNVFE---PR---------ALNELLPQWKQEE 174 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G-~~V~vlEk~~~~g~~~-~~g~~i~---~~---------~l~~l~~~~~~~~ 174 (631)
||||||+|.||++||+.|++. | ++|+||||.+..|+.+ .+++.+. .. ...+++.++....
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~------G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 74 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA------GAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGG 74 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc------CCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhc
Confidence 899999999999999999999 9 9999999998877654 2333221 10 1112222221110
Q ss_pred C----C--eee--eccCcceEeeccCCcccCC-----------CCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceE
Q 006778 175 A----P--IRV--PVSSDKFWFLTKDRAFSLP-----------SPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAA 235 (631)
Q Consensus 175 ~----~--~~~--~~~~~~~~~l~~~~~~~~p-----------~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v 235 (631)
. + ... ....+.+.|+.....+..+ ..... .........+.+.|.+.+++.|++|+++++|
T Consensus 75 ~~~~~~~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v 153 (439)
T TIGR01813 75 RGINDPELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRP-TGGAGSGAEIVQKLYKKAKKEGIDTRLNSKV 153 (439)
T ss_pred CCCCCHHHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccC-CCCCCCHHHHHHHHHHHHHHcCCEEEeCCEe
Confidence 0 0 000 0001111222211111110 00000 0011234578899999999999999999999
Q ss_pred EEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcc---cccCCcceeeEE
Q 006778 236 SEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREK---SHAQHQTYALGI 312 (631)
Q Consensus 236 ~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~---~~~~~~~~~~g~ 312 (631)
++++.+++++|++|.+.+ .+|+. ..+.+|.||+|+|.++. ..+|.+.+..... ....+...|.|+
T Consensus 154 ~~l~~~~~g~v~Gv~~~~----~~g~~-------~~~~a~~VVlAtGg~~~-n~~m~~~~~p~~~~~~~~~~~~~tGdG~ 221 (439)
T TIGR01813 154 EDLIQDDQGTVVGVVVKG----KGKGI-------YIKAAKAVVLATGGFGS-NKEMIAKYDPTLKGLGSTNQPGATGDGL 221 (439)
T ss_pred eEeEECCCCcEEEEEEEe----CCCeE-------EEEecceEEEecCCCCC-CHHHHHHhCCCcCCCCcCCCCCCchHHH
Confidence 999987767888887653 22221 35789999999999998 4556655533210 112234456666
Q ss_pred EEEEeecCC
Q 006778 313 KEVWEIDEG 321 (631)
Q Consensus 313 ~~~~~~~~~ 321 (631)
++..++...
T Consensus 222 ~ma~~aGa~ 230 (439)
T TIGR01813 222 LMAEKIGAA 230 (439)
T ss_pred HHHHHcCCC
Confidence 655554443
No 83
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.33 E-value=1.1e-12 Score=142.89 Aligned_cols=141 Identities=25% Similarity=0.361 Sum_probs=39.0
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChH-------hHHHHhhhhhhcCCCeeeec
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPR-------ALNELLPQWKQEEAPIRVPV 181 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~-------~l~~l~~~~~~~~~~~~~~~ 181 (631)
|||||||||||++||+.+++. |++|+||||.+.+|+...+++..... ....+...+...-.... ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~------G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~-~~ 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA------GAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARG-GY 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------TS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------
T ss_pred CEEEECccHHHHHHHHHHHHC------CCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhc-cc
Confidence 899999999999999999999 99999999999999877665542211 11222222222100000 00
Q ss_pred cCcceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCC
Q 006778 182 SSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (631)
Q Consensus 182 ~~~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~ 261 (631)
..+........+.+++..+...|.+.+++.|++|++++.|.+++.++ ++|++|.+.+ +.|
T Consensus 74 --------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~-~~i~~V~~~~----~~g- 133 (428)
T PF12831_consen 74 --------------PQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG-GRITGVIVET----KSG- 133 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc----ccc-
Confidence 00000000001346666777788888888999999999999999876 6788998875 334
Q ss_pred ccccccCceEEEcCEEEEecCC
Q 006778 262 KKENFQRGVELRGRITLLAEGC 283 (631)
Q Consensus 262 ~~~~f~~g~~i~a~~vV~A~G~ 283 (631)
..+++||+||+|||-
T Consensus 134 -------~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 134 -------RKEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------
T ss_pred -------ccccccccccccccc
Confidence 268999999999993
No 84
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.33 E-value=3.7e-10 Score=121.31 Aligned_cols=72 Identities=22% Similarity=0.241 Sum_probs=55.7
Q ss_pred cEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCC
Q 006778 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
...++...+.+.|.+.+++.|++++.+++|+++..++ +.+ .|.+.+ + ++.||.||+|+|.++
T Consensus 139 ~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-~~~-~v~~~~---------------~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 139 GGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTE-LLV-TVKTTK---------------G-SYQANKLVVTAGAWT 200 (380)
T ss_pred CcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC-CeE-EEEeCC---------------C-EEEeCEEEEecCcch
Confidence 4567888999999999999999999999999998765 334 466654 3 789999999999885
Q ss_pred chhHHHHHHcCCC
Q 006778 286 SLSEKLIKNFKLR 298 (631)
Q Consensus 286 ~~~~~l~~~~g~~ 298 (631)
. .+.+..++.
T Consensus 201 ~---~l~~~~g~~ 210 (380)
T TIGR01377 201 S---KLLSPLGIE 210 (380)
T ss_pred H---HHhhhcccC
Confidence 3 444445544
No 85
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.33 E-value=1.1e-10 Score=134.12 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=93.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCC--CccccccccChH---------hH--------HHHh
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG--AHIISGNVFEPR---------AL--------NELL 167 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g--~~~~~g~~i~~~---------~l--------~~l~ 167 (631)
.+||+|||||++|+++|+.|++. |++|+|||+...++ +...+++.+.+. .+ .+++
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~------G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~ 333 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR------GWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFY 333 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC------CCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999 99999999986443 322333333211 00 1222
Q ss_pred hhhhhcCCCe--------eeeccCcc----------------eEeeccCCccc-CCCC-----CCCCCcEEEeHHHHHHH
Q 006778 168 PQWKQEEAPI--------RVPVSSDK----------------FWFLTKDRAFS-LPSP-----FSNRGNYVISLSQLVRW 217 (631)
Q Consensus 168 ~~~~~~~~~~--------~~~~~~~~----------------~~~l~~~~~~~-~p~~-----~~~~~~~~v~~~~l~~~ 217 (631)
..+....... ....+.+. ..+++...... .+.. ........++...+++.
T Consensus 334 ~~l~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~a 413 (662)
T PRK01747 334 DALPAAGVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRA 413 (662)
T ss_pred HHHHhcCCCCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHH
Confidence 2222101000 00000000 00111000000 0100 01112344678899999
Q ss_pred HHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCc
Q 006778 218 LGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 218 L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
|.+.+++ |+++++++.|+++..++ +.+ .|.+.+ |..+.||.||+|+|.++.
T Consensus 414 L~~~a~~-Gv~i~~~~~V~~i~~~~-~~~-~v~t~~---------------g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 414 LLALAGQ-QLTIHFGHEVARLERED-DGW-QLDFAG---------------GTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHhccc-CcEEEeCCEeeEEEEeC-CEE-EEEECC---------------CcEEECCEEEECCCCCcc
Confidence 9999999 99999999999998765 334 366655 556789999999999874
No 86
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.32 E-value=1.9e-10 Score=123.70 Aligned_cols=203 Identities=21% Similarity=0.172 Sum_probs=108.5
Q ss_pred cEEEeHHHHHHHHHHHHHhcC-cEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCC
Q 006778 206 NYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~ 284 (631)
...++...+.+.|.+.++++| ..+..++.+..+..+ . .+++|.+.+ |. ++|+.||+|+|.+
T Consensus 150 ~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~---------------g~-i~a~~vv~a~G~~ 211 (387)
T COG0665 150 GGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDG---------------GT-IEADKVVLAAGAW 211 (387)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCC---------------cc-EEeCEEEEcCchH
Confidence 344677899999999999999 556668888888776 2 466788876 44 9999999999998
Q ss_pred CchhHHHHHHcC-CCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEEEEeCCCeEEEEEEEcCC
Q 006778 285 GSLSEKLIKNFK-LREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALN 363 (631)
Q Consensus 285 s~~~~~l~~~~g-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~~~~G~~~~~~~~~~~~~ig~~~~~d 363 (631)
+. .+...++ +.. ...|.. +.....+............ ..+.. .....|+.|..++.+.+|-.....
T Consensus 212 ~~---~l~~~~~~~~~--~~~p~~---~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~y~~~~~~g~~~~g~~~~~~ 278 (387)
T COG0665 212 AG---ELAATLGELPL--PLRPVR---GQALTTEPPEGLLADGLAP--VVLVV---DDGGGYIRPRGDGRLRVGGTDEEG 278 (387)
T ss_pred HH---HHHHhcCCCcC--cccccc---ceEEEecCCCccccccccc--eEEEe---cCCceEEEEcCCCcEEEeeccccc
Confidence 63 4444455 221 011111 1111111111110001000 00111 113367888778888888665443
Q ss_pred C-CCCCCCcHH-----HHHHh-hcCcchhccccCCceeeecceeeccCCcccCCccc-CCCEEEEcc-----CCccCCCC
Q 006778 364 Y-HNPFLNPYE-----EFQKF-KHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV-FPGGAIIGC-----AAGFLNVP 430 (631)
Q Consensus 364 ~-~~~~~~~~~-----~~~~~-~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~-~~~v~LiGD-----AA~~~~P~ 430 (631)
. ......+.+ ..... +..|.+..... .. .+.++. ..+ .++.-+||- -.....-+
T Consensus 279 ~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~----~~------~w~g~~---~~t~pd~~P~iG~~~~~~~l~~a~G~ 345 (387)
T COG0665 279 GDDPSDPEREDLVIAELLRVARALLPGLADAGI----EA------AWAGLR---PPTTPDGLPVIGRAAPLPNLYVATGH 345 (387)
T ss_pred CCCCccccCcchhHHHHHHHHHHhCcccccccc----ce------eeeccc---cCCCCCCCceeCCCCCCCCEEEEecC
Confidence 1 111112222 11122 22344332221 11 122222 222 455556663 12222356
Q ss_pred CCcchHHHHHHHHHHHHHHhcc
Q 006778 431 KIKGTHTAMKSGMLAAEAGFGV 452 (631)
Q Consensus 431 ~g~G~~~Al~sa~~aA~~l~~~ 452 (631)
.+.|+.++-..|+++|+.|...
T Consensus 346 ~~~G~~~~p~~g~~lA~li~g~ 367 (387)
T COG0665 346 GGHGFTLAPALGRLLADLILGG 367 (387)
T ss_pred CCcChhhccHHHHHHHHHHcCC
Confidence 7789999999999999998763
No 87
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.30 E-value=3.1e-11 Score=131.41 Aligned_cols=160 Identities=25% Similarity=0.350 Sum_probs=92.2
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc-ccccccC------------hHhHHHHhhhhhhcCC
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE------------PRALNELLPQWKQEEA 175 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~-~~g~~i~------------~~~l~~l~~~~~~~~~ 175 (631)
||||||+|.|||+||+.|++. |.+|+||||.+..|+.+ .+++.+. .....+.+.++.....
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~------G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 74 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA------GAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGG 74 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT------TT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHhhh------cCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccc
Confidence 899999999999999999999 99999999999877644 2221111 0111222222221110
Q ss_pred Ce-e-------eeccCcceEeeccCCcccCCC-----------------------CCCCCCcEEEeHHHHHHHHHHHHHh
Q 006778 176 PI-R-------VPVSSDKFWFLTKDRAFSLPS-----------------------PFSNRGNYVISLSQLVRWLGGKAEE 224 (631)
Q Consensus 176 ~~-~-------~~~~~~~~~~l~~~~~~~~p~-----------------------~~~~~~~~~v~~~~l~~~L~~~a~~ 224 (631)
.. . .....+.+.|+.+. .+.+.. ..............+.+.|.+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 153 (417)
T PF00890_consen 75 GLNDPDLVRAFVENSPEAIDWLEEL-GVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEE 153 (417)
T ss_dssp T-S-HHHHHHHHHHHHHHHHHHHHT-T--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhcccceehhhhhh-cccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhh
Confidence 00 0 00000111111100 000000 0000001122557889999999999
Q ss_pred cCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCc
Q 006778 225 LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 225 ~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
.|++|++++.+++++.++ ++|+||...+ ..+|+. .+|+|+.||+|+|.++.
T Consensus 154 ~gv~i~~~~~~~~Li~e~-g~V~Gv~~~~---~~~g~~-------~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 154 AGVDIRFNTRVTDLITED-GRVTGVVAEN---PADGEF-------VRIKAKAVILATGGFGG 204 (417)
T ss_dssp TTEEEEESEEEEEEEEET-TEEEEEEEEE---TTTCEE-------EEEEESEEEE----BGG
T ss_pred cCeeeeccceeeeEEEeC-CceeEEEEEE---CCCCeE-------EEEeeeEEEeccCcccc
Confidence 999999999999999975 7999998873 133432 57899999999999986
No 88
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.30 E-value=3.3e-10 Score=122.36 Aligned_cols=167 Identities=23% Similarity=0.292 Sum_probs=101.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc--ccccccC------hHhH--------HHHhhhh
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI--ISGNVFE------PRAL--------NELLPQW 170 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~--~~g~~i~------~~~l--------~~l~~~~ 170 (631)
.+||+|||||++|+++|+.|++. .+|++|+|+||+..++... .+++.+. +..+ .++++.|
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~----~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 77 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQER----YPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAF 77 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHh----CCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999986 4589999999986554322 2222221 1111 1122222
Q ss_pred hhc-CCCee------eeccCc-----------------ceEeeccCCcc-cCCC-----CCCCCCcEEEeHHHHHHHHHH
Q 006778 171 KQE-EAPIR------VPVSSD-----------------KFWFLTKDRAF-SLPS-----PFSNRGNYVISLSQLVRWLGG 220 (631)
Q Consensus 171 ~~~-~~~~~------~~~~~~-----------------~~~~l~~~~~~-~~p~-----~~~~~~~~~v~~~~l~~~L~~ 220 (631)
... ..+.. .....+ ...+++...-. ..|. .........++...+.+.|.+
T Consensus 78 ~~~~~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~ 157 (393)
T PRK11728 78 CDQHGIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAE 157 (393)
T ss_pred HHHcCCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHH
Confidence 211 11110 000000 01111110000 0111 011123456788999999999
Q ss_pred HHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCC
Q 006778 221 KAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (631)
Q Consensus 221 ~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~ 298 (631)
.+++.|++++++++|.++..+++ .+ .|.+.+ | ++.||.||+|+|.++. .+.+.+++.
T Consensus 158 ~~~~~Gv~i~~~~~V~~i~~~~~-~~-~V~~~~---------------g-~i~ad~vV~A~G~~s~---~l~~~~g~~ 214 (393)
T PRK11728 158 LIQARGGEIRLGAEVTALDEHAN-GV-VVRTTQ---------------G-EYEARTLINCAGLMSD---RLAKMAGLE 214 (393)
T ss_pred HHHhCCCEEEcCCEEEEEEecCC-eE-EEEECC---------------C-EEEeCEEEECCCcchH---HHHHHhCCC
Confidence 99999999999999999987653 33 566654 4 7999999999999873 444556654
No 89
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.30 E-value=5.3e-11 Score=132.39 Aligned_cols=197 Identities=20% Similarity=0.262 Sum_probs=112.9
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc-ccccccC---hH---------hHHHHhhhhh
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE---PR---------ALNELLPQWK 171 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~-~~g~~i~---~~---------~l~~l~~~~~ 171 (631)
..++||||||+|.||++||+.+++. |++|+||||.+..|+++ .+++.+. .+ ...+++.++.
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~------Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~ 132 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDA------GMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETL 132 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHC------CCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHH
Confidence 3579999999999999999999999 99999999999887654 2222221 10 0112222221
Q ss_pred hcCC----C--eee--eccCcceEeeccCCcccCC-----CCCCCCCcE-----EEeHHHHHHHHHHHHHhcCcEEecCc
Q 006778 172 QEEA----P--IRV--PVSSDKFWFLTKDRAFSLP-----SPFSNRGNY-----VISLSQLVRWLGGKAEELGVEIYPGF 233 (631)
Q Consensus 172 ~~~~----~--~~~--~~~~~~~~~l~~~~~~~~p-----~~~~~~~~~-----~v~~~~l~~~L~~~a~~~Gv~i~~g~ 233 (631)
.... + ... ....+.+.|+.+ .++.+. ........+ ......+...|.+.+++.|++|++++
T Consensus 133 ~~~~~~~d~~l~~~~~~~s~~~i~wl~~-~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t 211 (506)
T PRK06481 133 KGGGGTNDKALLRYFVDNSASAIDWLDS-MGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNA 211 (506)
T ss_pred HhcCCCCCHHHHHHHHhccHHHHHHHHH-cCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCC
Confidence 1100 0 000 001111222221 111110 000000000 01234678889999999999999999
Q ss_pred eEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcc---cccCCcceee
Q 006778 234 AASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREK---SHAQHQTYAL 310 (631)
Q Consensus 234 ~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~---~~~~~~~~~~ 310 (631)
.|++++.++ ++|++|.+.. .+|+ ..++.||.||+|+|.++.... +.+.+..... ....+...|.
T Consensus 212 ~v~~l~~~~-g~V~Gv~~~~----~~g~-------~~~i~a~~VVlAtGG~~~n~~-m~~~~~p~~~~~~~~~~~g~tGd 278 (506)
T PRK06481 212 DVTKITEKD-GKVTGVKVKI----NGKE-------TKTISSKAVVVTTGGFGANKD-MIAKYRPDLKGYVTTNQEGSTGD 278 (506)
T ss_pred eeEEEEecC-CEEEEEEEEe----CCCe-------EEEEecCeEEEeCCCcccCHH-HHHHhCccccCCccCCCCCCChH
Confidence 999998654 7788887643 2222 257999999999999988544 4444543210 1123345566
Q ss_pred EEEEEEeecCC
Q 006778 311 GIKEVWEIDEG 321 (631)
Q Consensus 311 g~~~~~~~~~~ 321 (631)
|+++...+...
T Consensus 279 Gi~ma~~aGA~ 289 (506)
T PRK06481 279 GIKMIEKLGGT 289 (506)
T ss_pred HHHHHHHcCCC
Confidence 66665555443
No 90
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.29 E-value=2.6e-11 Score=137.51 Aligned_cols=195 Identities=19% Similarity=0.208 Sum_probs=112.3
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-cccccC-------hHhHHHHhhhhhhcC--
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE-------PRALNELLPQWKQEE-- 174 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g~~i~-------~~~l~~l~~~~~~~~-- 174 (631)
..++||||||+|.|||+||+.+++. |++|+||||....++++. +++.+. .......+.+.....
T Consensus 48 ~~~~DVlVIG~G~AGl~AAl~Aae~------G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~ 121 (635)
T PLN00128 48 DHTYDAVVVGAGGAGLRAAIGLSEH------GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDW 121 (635)
T ss_pred eeecCEEEECccHHHHHHHHHHHhc------CCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCC
Confidence 3578999999999999999999998 999999999986665432 211111 111111111111100
Q ss_pred --CC--eee--eccCcceEeeccCCcccCCCCC------CCCCc------------EE-----EeHHHHHHHHHHHHHhc
Q 006778 175 --AP--IRV--PVSSDKFWFLTKDRAFSLPSPF------SNRGN------------YV-----ISLSQLVRWLGGKAEEL 225 (631)
Q Consensus 175 --~~--~~~--~~~~~~~~~l~~~~~~~~p~~~------~~~~~------------~~-----v~~~~l~~~L~~~a~~~ 225 (631)
.+ ... ....+.+.++. ..++.+.... ...++ .+ -....+.+.|.+.+++.
T Consensus 122 ~~d~~lv~~l~~~s~~~i~~L~-~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~ 200 (635)
T PLN00128 122 LGDQDAIQYMCREAPKAVIELE-NYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKH 200 (635)
T ss_pred CCCHHHHHHHHHhHHHHHHHHH-hCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhC
Confidence 00 000 00011111111 1111111000 00000 00 12456888999999889
Q ss_pred CcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCC
Q 006778 226 GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQH 305 (631)
Q Consensus 226 Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~ 305 (631)
||+|+.++.+++++.+++|+|.||...+ .++|+. ..+.|+.||+|||+.+.+- ... ...+
T Consensus 201 gv~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~g~~~-------~~t---t~~~ 260 (635)
T PLN00128 201 NTQFFVEYFALDLIMDSDGACQGVIALN---MEDGTL-------HRFRAHSTILATGGYGRAY-------FSA---TSAH 260 (635)
T ss_pred CCEEEEeeEEEEEEEcCCCEEEEEEEEE---cCCCeE-------EEEEcCeEEECCCCCcccc-------ccc---cCCC
Confidence 9999999999999887568898987643 123432 6789999999999998532 111 2234
Q ss_pred cceeeEEEEEEeecCCCCCCC
Q 006778 306 QTYALGIKEVWEIDEGKHNPG 326 (631)
Q Consensus 306 ~~~~~g~~~~~~~~~~~~~~g 326 (631)
...|.|+.+.++.........
T Consensus 261 ~~tGDG~~mA~~aGA~l~~me 281 (635)
T PLN00128 261 TCTGDGNAMVARAGLPLQDLE 281 (635)
T ss_pred CCCCHHHHHHHHcCCCCcCCc
Confidence 456777766666555433333
No 91
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.29 E-value=1e-09 Score=122.05 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=50.0
Q ss_pred EeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCC
Q 006778 209 ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 209 v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
++...+...+...+++.|++++.+++|+++..++ + .++|.+.+ ..+|+ ..+++||.||.|+|.|+
T Consensus 152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~-~-~~~v~~~~---~~~g~-------~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 152 VDDARLVVLNARDAAERGAEILTRTRVVSARREN-G-LWHVTLED---TATGK-------RYTVRARALVNAAGPWV 216 (508)
T ss_pred cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-C-EEEEEEEE---cCCCC-------EEEEEcCEEEECCCccH
Confidence 5678888888889999999999999999997764 3 34566543 11222 25799999999999986
No 92
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.28 E-value=1.9e-11 Score=137.06 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEc-CEEEEecCCCCchhHH
Q 006778 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLSEK 290 (631)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a-~~vV~A~G~~s~~~~~ 290 (631)
..|...|.+.+++.||+|+++++|++++.+ +|+|+||...+ +|. ...+.| +.||+|+|.++.. .+
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~-------~~~i~a~kaVILAtGGf~~n-~e 282 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-----RGR-------EVTVTARRGVVLAAGGFDHD-ME 282 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEE-----CCc-------EEEEEcCCEEEEecCCcccc-HH
Confidence 456677888899999999999999999875 58899987543 222 145677 6899999999985 45
Q ss_pred HHHHcCCCc----ccccCCcceeeEEEEEEeecCCC
Q 006778 291 LIKNFKLRE----KSHAQHQTYALGIKEVWEIDEGK 322 (631)
Q Consensus 291 l~~~~g~~~----~~~~~~~~~~~g~~~~~~~~~~~ 322 (631)
|.++|.... .....+...|.|+++..++....
T Consensus 283 m~~~y~p~~~~~~~~~~~~~~tGDGi~ma~~aGA~l 318 (564)
T PRK12845 283 MRWKFQSESLGEHASLGAEGNTGDAIRIAQDLGAAI 318 (564)
T ss_pred HHHHhCCCccccccccCCCCCCCHHHHHHHHcCCCc
Confidence 555554320 01234556677777766665543
No 93
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.27 E-value=8.6e-12 Score=140.30 Aligned_cols=189 Identities=20% Similarity=0.255 Sum_probs=108.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-cccccC--------h-HhHHHHhhhhhhcCC
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE--------P-RALNELLPQWKQEEA 175 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g~~i~--------~-~~l~~l~~~~~~~~~ 175 (631)
+++||||||+|.|||+||+.+++. |++|+||||.+..++++. +++.+. + ......+.+......
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~------G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~ 77 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASA------GFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGD 77 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHC------CCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhc
Confidence 578999999999999999999998 999999999976555432 222111 0 111111111110000
Q ss_pred ----C--eee--eccCcceEeeccCCcccCCCC---------CCC----CCcEEE--eHHHHHHHHHHHHHhcCcEEecC
Q 006778 176 ----P--IRV--PVSSDKFWFLTKDRAFSLPSP---------FSN----RGNYVI--SLSQLVRWLGGKAEELGVEIYPG 232 (631)
Q Consensus 176 ----~--~~~--~~~~~~~~~l~~~~~~~~p~~---------~~~----~~~~~v--~~~~l~~~L~~~a~~~Gv~i~~g 232 (631)
+ ... .-..+.+.|+.. .++.+... ... ...+.. ....+.+.|.+.+++.||+++++
T Consensus 78 ~~~d~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~ 156 (566)
T PRK06452 78 YLVDQDAAELLSNKSGEIVMLLER-WGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNE 156 (566)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH-CCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 0 000 000111112111 11111100 000 000111 23467888888888889999999
Q ss_pred ceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEE
Q 006778 233 FAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGI 312 (631)
Q Consensus 233 ~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~ 312 (631)
+.+++++.+ +|+|+||...+. .+|+. ..+.|+.||+|||+.+.+. ... ...+...|.|+
T Consensus 157 ~~~~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~l~-------~~~---~~~~~~tGDGi 215 (566)
T PRK06452 157 WFSLDLVTD-NKKVVGIVAMQM---KTLTP-------FFFKTKAVVLATGGMGMLY-------RHT---TNSYINTGDGF 215 (566)
T ss_pred cEEEEEEEE-CCEEEEEEEEEC---CCCeE-------EEEEeCeEEECCCcccccc-------CCC---CCCCCcChHHH
Confidence 999999986 488999887541 12322 5789999999999998431 111 22344567777
Q ss_pred EEEEeecCCC
Q 006778 313 KEVWEIDEGK 322 (631)
Q Consensus 313 ~~~~~~~~~~ 322 (631)
.+.+++....
T Consensus 216 ~mA~~aGA~l 225 (566)
T PRK06452 216 GIALRAGAAL 225 (566)
T ss_pred HHHHHcCCcc
Confidence 6655555443
No 94
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.27 E-value=3.2e-11 Score=133.32 Aligned_cols=148 Identities=17% Similarity=0.296 Sum_probs=91.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC-CCCCccccc---cccChHhHHHHhhhhhhcCCCeeeec
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA-EVGAHIISG---NVFEPRALNELLPQWKQEEAPIRVPV 181 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~-~~g~~~~~g---~~i~~~~l~~l~~~~~~~~~~~~~~~ 181 (631)
.+|||||||||+||++||+.+++. |++|+|+|+.. .+|.- .+. +.+....+.+-++.+. .......
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~------G~kV~LiE~~~d~iG~m-~CnpsiGG~akg~lvrEidalG---g~~g~~~ 72 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARM------GAKTLLLTHNLDTIGQM-SCNPAIGGIAKGHLVREIDALG---GEMGKAI 72 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHc------CCcEEEEeccccccccc-CCccccccchhhHHHHHHHhcC---CHHHHHH
Confidence 469999999999999999999999 99999999984 45431 111 1111111111111111 0000000
Q ss_pred c--CcceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCcccc
Q 006778 182 S--SDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (631)
Q Consensus 182 ~--~~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~ 258 (631)
+ ...+..+....+ |. . ......+++..+.+.|.+.+++. |++++ ...|+++..++ +.|.+|.+.+
T Consensus 73 d~~giq~r~ln~skG---pA-V-~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~-grV~GV~t~d----- 140 (618)
T PRK05192 73 DKTGIQFRMLNTSKG---PA-V-RALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVEN-GRVVGVVTQD----- 140 (618)
T ss_pred hhccCceeecccCCC---Cc-e-eCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecC-CEEEEEEECC-----
Confidence 0 001112211100 00 0 00123578888899998888876 78886 56788887765 6788999877
Q ss_pred CCCccccccCceEEEcCEEEEecCCCC
Q 006778 259 DGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
|..+.|+.||+|||.+.
T Consensus 141 ----------G~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 141 ----------GLEFRAKAVVLTTGTFL 157 (618)
T ss_pred ----------CCEEECCEEEEeeCcch
Confidence 77899999999999764
No 95
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.26 E-value=2.4e-09 Score=121.70 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=58.0
Q ss_pred EEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcC-CCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCc
Q 006778 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDA-DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 208 ~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~-~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
.++...+...|.+.+++.|++|+.++.|+++..++ ++.+++|.+.|. .+|+ ..+++||.||+|+|.|+
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~---~tg~-------~~~i~a~~VVnAaGaws- 296 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDN---LTGK-------EFDVYAKVVVNAAGPFC- 296 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEEC---CCCc-------EEEEEeCEEEECCCHhH-
Confidence 46888999999999999999999999999998764 467777776431 1121 23789999999999996
Q ss_pred hhHHHHHHcC
Q 006778 287 LSEKLIKNFK 296 (631)
Q Consensus 287 ~~~~l~~~~g 296 (631)
..+.+..+
T Consensus 297 --~~l~~~~g 304 (627)
T PLN02464 297 --DEVRKMAD 304 (627)
T ss_pred --HHHHHhcc
Confidence 34444444
No 96
>PRK07121 hypothetical protein; Validated
Probab=99.26 E-value=9e-11 Score=130.39 Aligned_cols=98 Identities=20% Similarity=0.256 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEc-CEEEEecCCCCchhH
Q 006778 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLSE 289 (631)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a-~~vV~A~G~~s~~~~ 289 (631)
...+.+.|.+.+++.|++|+++++|++++.+++|+|++|...+ +|+ ...++| +.||+|+|.++.. +
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----~~~-------~~~i~a~k~VVlAtGg~~~N-~ 242 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR-----YGE-------TVAIRARKGVVLAAGGFAMN-R 242 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----CCc-------EEEEEeCCEEEECCCCcCcC-H
Confidence 4568888999999999999999999999987667898988743 222 257899 9999999999984 4
Q ss_pred HHHHHcCCCcc---cccCCcceeeEEEEEEeecCC
Q 006778 290 KLIKNFKLREK---SHAQHQTYALGIKEVWEIDEG 321 (631)
Q Consensus 290 ~l~~~~g~~~~---~~~~~~~~~~g~~~~~~~~~~ 321 (631)
+|.+.+..... ....+...|.|+++..++...
T Consensus 243 em~~~~~p~~~~~~~~~~~~~tGdG~~ma~~aGa~ 277 (492)
T PRK07121 243 EMVARYAPAYAGGLPLGTTGDDGSGIRLGQSAGGA 277 (492)
T ss_pred HHHHHhCCcccCCcCCCCCCCccHHHHHHHHhCCc
Confidence 45555532210 112334567777665555443
No 97
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.26 E-value=1.3e-10 Score=131.86 Aligned_cols=166 Identities=20% Similarity=0.279 Sum_probs=97.4
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-cccccC-------hHhHHHHhhhhhhcCC-
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE-------PRALNELLPQWKQEEA- 175 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g~~i~-------~~~l~~l~~~~~~~~~- 175 (631)
..++||||||+|.|||+||+.+++. |++|+||||....++++. +.+.+. .......+.+......
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~------G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~ 100 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVEL------GYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDW 100 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHc------CCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCC
Confidence 3579999999999999999999998 999999999987665432 211111 1111111111100000
Q ss_pred ---C--eee--eccCcceEeeccCCcccCCC---------CCC--------C----CCcEEE--eHHHHHHHHHHHHHhc
Q 006778 176 ---P--IRV--PVSSDKFWFLTKDRAFSLPS---------PFS--------N----RGNYVI--SLSQLVRWLGGKAEEL 225 (631)
Q Consensus 176 ---~--~~~--~~~~~~~~~l~~~~~~~~p~---------~~~--------~----~~~~~v--~~~~l~~~L~~~a~~~ 225 (631)
+ ... ....+.+.|+.+ .++.+.. ... . ...+.. ....+.+.|.+++++.
T Consensus 101 ~~d~~lv~~l~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~ 179 (617)
T PTZ00139 101 LGDQDAIQYMCREAPQAVLELES-YGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKY 179 (617)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh-cCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhC
Confidence 0 000 000011111110 0111100 000 0 000011 2357889999999999
Q ss_pred CcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch
Q 006778 226 GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 226 Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
||+|+.++.+++++.+++|+|.||...+ .++|+. ..+.|+.||+|||+.+.+
T Consensus 180 gv~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 180 DCNFFIEYFALDLIMDEDGECRGVIAMS---MEDGSI-------HRFRAHYTVIATGGYGRA 231 (617)
T ss_pred CCEEEeceEEEEEEECCCCEEEEEEEEE---CCCCeE-------EEEECCcEEEeCCCCccc
Confidence 9999999999999985568898987533 123432 578999999999998753
No 98
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.26 E-value=1.1e-10 Score=131.72 Aligned_cols=189 Identities=17% Similarity=0.207 Sum_probs=109.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-ccccc----C---hHhHHHHhhhhhhcC---
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVF----E---PRALNELLPQWKQEE--- 174 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g~~i----~---~~~l~~l~~~~~~~~--- 174 (631)
.++||||||+|.|||+||+.+++. |++|+||||....++++. +++.+ . .......+.+.....
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~------G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~ 79 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQS------GQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYI 79 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHc------CCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCC
Confidence 468999999999999999999998 999999999976555432 21111 1 111111121111100
Q ss_pred -CC--eee--eccCcceEeeccCCcccCCCC------CCCCCc--------------EEE--eHHHHHHHHHHHHHhcCc
Q 006778 175 -AP--IRV--PVSSDKFWFLTKDRAFSLPSP------FSNRGN--------------YVI--SLSQLVRWLGGKAEELGV 227 (631)
Q Consensus 175 -~~--~~~--~~~~~~~~~l~~~~~~~~p~~------~~~~~~--------------~~v--~~~~l~~~L~~~a~~~Gv 227 (631)
.+ +.. ....+.+.|+. ..++.+... ....++ +.. ....|...|.+++++.|+
T Consensus 80 ~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi 158 (588)
T PRK08958 80 GDQDAIEYMCKTGPEAILELE-HMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHT 158 (588)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCC
Confidence 00 000 00011111111 111111100 000000 111 235688889998888999
Q ss_pred EEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcc
Q 006778 228 EIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQT 307 (631)
Q Consensus 228 ~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~ 307 (631)
+|+.++.+++++.+++|+|+||...+ .++|+. ..+.|+.||+|||+.+.+-. .. ...+..
T Consensus 159 ~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~~~~~~-------~~---~~~~~~ 218 (588)
T PRK08958 159 TIFSEWYALDLVKNQDGAVVGCTAIC---IETGEV-------VYFKARATVLATGGAGRIYQ-------ST---TNAHIN 218 (588)
T ss_pred EEEeCcEEEEEEECCCCEEEEEEEEE---cCCCcE-------EEEEcCeEEECCCCcccccc-------cc---cCCCCC
Confidence 99999999999987668999987643 123432 57899999999999986321 11 223445
Q ss_pred eeeEEEEEEeecCC
Q 006778 308 YALGIKEVWEIDEG 321 (631)
Q Consensus 308 ~~~g~~~~~~~~~~ 321 (631)
.|.|+.+.++....
T Consensus 219 tGdG~~mA~~aGA~ 232 (588)
T PRK08958 219 TGDGVGMALRAGVP 232 (588)
T ss_pred CcHHHHHHHHcCCc
Confidence 66666655555443
No 99
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.25 E-value=1.3e-10 Score=117.65 Aligned_cols=53 Identities=38% Similarity=0.608 Sum_probs=49.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHH
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALN 164 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~ 164 (631)
.+|||+|||+||+|..||+.++|+ |++.+++|++..+|+++++.+|+++++|.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl------GlkTacvEkr~~LGGTcLnvGcIPSKALL 90 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL------GLKTACVEKRGTLGGTCLNVGCIPSKALL 90 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh------cceeEEEeccCccCceeeeccccccHHHh
Confidence 379999999999999999999999 99999999999999999999999988763
No 100
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.24 E-value=1.6e-11 Score=119.67 Aligned_cols=137 Identities=27% Similarity=0.322 Sum_probs=80.1
Q ss_pred EEECCCHHHHHHHHHHHhhcccCCCCCe-EEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceEee
Q 006778 111 VIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWFL 189 (631)
Q Consensus 111 vIVGgG~aGL~aA~~La~~~~~~~~G~~-V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l 189 (631)
+||||||+||++|+.|.+. |++ |+|||+++.+|+....-.. ......+.... ..-.+..+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~------g~~~v~v~e~~~~~Gg~w~~~~~------------~~~~~~~~~~~-~~~~~~~~ 61 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER------GIDPVVVLERNDRPGGVWRRYYS------------YTRLHSPSFFS-SDFGLPDF 61 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT------T---EEEEESSSSSTTHHHCH-T------------TTT-BSSSCCT-GGSS--CC
T ss_pred CEECcCHHHHHHHHHHHhC------CCCcEEEEeCCCCCCCeeEEeCC------------CCccccCcccc-ccccCCcc
Confidence 6999999999999999999 999 9999999999875421000 00000000000 00000000
Q ss_pred ccCCcccCCC-CCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccC
Q 006778 190 TKDRAFSLPS-PFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQR 268 (631)
Q Consensus 190 ~~~~~~~~p~-~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~ 268 (631)
..+.... +..........+.++.++|.+.+++.+++++++++|+++..++++ +.|++.+
T Consensus 62 ---~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~--------------- 121 (203)
T PF13738_consen 62 ---ESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRD--------------- 121 (203)
T ss_dssp ---CHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETT---------------
T ss_pred ---cccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEe---------------
Confidence 0000000 000001122778899999999999999999999999999999866 4688876
Q ss_pred ceEEEcCEEEEecCCCCc
Q 006778 269 GVELRGRITLLAEGCRGS 286 (631)
Q Consensus 269 g~~i~a~~vV~A~G~~s~ 286 (631)
+.+++||.||+|+|..+.
T Consensus 122 ~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 122 GRTIRADRVVLATGHYSH 139 (203)
T ss_dssp S-EEEEEEEEE---SSCS
T ss_pred cceeeeeeEEEeeeccCC
Confidence 568999999999997653
No 101
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.24 E-value=9.2e-11 Score=123.28 Aligned_cols=143 Identities=20% Similarity=0.302 Sum_probs=89.7
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEE-eeCCCCCCccccccc---cChHhHHHHhhhhhhcCCCeeeeccCc
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVV-EKGAEVGAHIISGNV---FEPRALNELLPQWKQEEAPIRVPVSSD 184 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vl-Ek~~~~g~~~~~g~~---i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (631)
||+|||||.||+.||+.+++. |++|+++ ++.+.++... +... +....|.+-+..+ +..+....+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~------G~~V~Lit~~~d~i~~~~-Cnpsigg~~kg~L~~Eidal---gg~m~~~aD~~ 70 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM------GAKVLLITHNTDTIGEMS-CNPSIGGIAKGHLVREIDAL---GGLMGRAADET 70 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------T--EEEEES-GGGTT--S-SSSEEESTTHHHHHHHHHHT---T-SHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEeeccccccccc-chhhhccccccchhHHHhhh---hhHHHHHHhHh
Confidence 899999999999999999999 9999999 5555555422 2211 1222232222221 11111111111
Q ss_pred --ceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHh-cCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCC
Q 006778 185 --KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (631)
Q Consensus 185 --~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~ 261 (631)
.+..+....+... ....+.++|..+.+++.+.+++ .+++|+ ...|+++..++ ++|++|.+.+
T Consensus 71 ~i~~~~lN~skGpav-----~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~-~~v~GV~~~~-------- 135 (392)
T PF01134_consen 71 GIHFRMLNRSKGPAV-----HALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVEN-GKVKGVVTKD-------- 135 (392)
T ss_dssp EEEEEEESTTS-GGC-----TEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECT-TEEEEEEETT--------
T ss_pred hhhhhcccccCCCCc-----cchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecC-CeEEEEEeCC--------
Confidence 2233332222111 1114589999999999999988 468886 67899998876 7899999987
Q ss_pred ccccccCceEEEcCEEEEecCC
Q 006778 262 KKENFQRGVELRGRITLLAEGC 283 (631)
Q Consensus 262 ~~~~f~~g~~i~a~~vV~A~G~ 283 (631)
|..+.||.||+|||.
T Consensus 136 -------g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 136 -------GEEIEADAVVLATGT 150 (392)
T ss_dssp -------SEEEEECEEEE-TTT
T ss_pred -------CCEEecCEEEEeccc
Confidence 889999999999998
No 102
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=2.1e-10 Score=129.62 Aligned_cols=66 Identities=23% Similarity=0.377 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch
Q 006778 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
..|...|.+.+.+.|++++.++.+++++.+++|+|.||.+.+ ..+|+. ..+.|+.||+|+|+.+.+
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALE---METGDV-------YILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEE---cCCCeE-------EEEECCeEEECCCCcccc
Confidence 568888999998899999999999999987668888987643 122321 578999999999999864
No 103
>PRK08275 putative oxidoreductase; Provisional
Probab=99.23 E-value=7.3e-11 Score=132.75 Aligned_cols=169 Identities=24% Similarity=0.323 Sum_probs=95.9
Q ss_pred cCccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcccc-c-cccC----h--HhHHHHhhhhhhcCC
Q 006778 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS-G-NVFE----P--RALNELLPQWKQEEA 175 (631)
Q Consensus 104 ~~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~-g-~~i~----~--~~l~~l~~~~~~~~~ 175 (631)
+.+++||||||||.|||+||+.+++. ++|++|+||||.+..++...+ + +.+. + ......+.+......
T Consensus 6 ~~~~~DVlVIG~G~AGl~AAi~aa~~----g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~ 81 (554)
T PRK08275 6 QEVETDILVIGGGTAGPMAAIKAKER----NPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIAND 81 (554)
T ss_pred eeEecCEEEECcCHHHHHHHHHHHHh----CCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcC
Confidence 34679999999999999999999985 236899999999864332221 1 1110 0 111111111111000
Q ss_pred Ce------eeec--cCcceEeeccCCcccCCC---------CCCCCCcEE---EeHHHHHHHHHHHHHhcCcEEecCceE
Q 006778 176 PI------RVPV--SSDKFWFLTKDRAFSLPS---------PFSNRGNYV---ISLSQLVRWLGGKAEELGVEIYPGFAA 235 (631)
Q Consensus 176 ~~------~~~~--~~~~~~~l~~~~~~~~p~---------~~~~~~~~~---v~~~~l~~~L~~~a~~~Gv~i~~g~~v 235 (631)
.. ...+ ..+.+.++.. .++.+.. .....+.+. -....+.+.|.+.+++.|++|++++.|
T Consensus 82 ~~~d~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v 160 (554)
T PRK08275 82 GIVDQKAVYAYAEHSFETIQQLDR-WGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMA 160 (554)
T ss_pred CCccHHHHHHHHHhhHHHHHHHHH-CCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEE
Confidence 00 0000 0011111110 1111100 000011111 123467889999999999999999999
Q ss_pred EEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch
Q 006778 236 SEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 236 ~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
++++.++++++.||...+ ..+|+. ..+.|+.||+|||+.+.+
T Consensus 161 ~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 161 TRLLTDADGRVAGALGFD---CRTGEF-------LVIRAKAVILCCGAAGRL 202 (554)
T ss_pred EEEEEcCCCeEEEEEEEe---cCCCcE-------EEEECCEEEECCCCcccc
Confidence 999987557888887533 123332 568999999999998754
No 104
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=2.3e-10 Score=129.59 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHH
Q 006778 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKL 291 (631)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l 291 (631)
..+...|.+.+++.||+|+.++.+++++.+++|+|.||...+ .++|+. ..+.|+.||+|||+.+.+
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~~---- 214 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWN---LDDGTL-------HRFRAHMVVLATGGYGRA---- 214 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEE---CCCCcE-------EEEEcCEEEECCCCCccc----
Confidence 468888999999899999999999999987667898987632 123432 578999999999999853
Q ss_pred HHHcCCCcccccCCcceeeEEEEEEeecCC
Q 006778 292 IKNFKLREKSHAQHQTYALGIKEVWEIDEG 321 (631)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 321 (631)
+... ...+...|.|+.+.+.....
T Consensus 215 ---~~~~---t~~~~~tGdGi~ma~~aGA~ 238 (598)
T PRK09078 215 ---YFSA---TSAHTCTGDGGGMVLRAGLP 238 (598)
T ss_pred ---cCcc---CCCCCcccHHHHHHHHcCCC
Confidence 1111 22334556666655554443
No 105
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.22 E-value=1.9e-10 Score=129.84 Aligned_cols=95 Identities=20% Similarity=0.230 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcC-EEEEecCCCCchhHHHH
Q 006778 214 LVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEKLI 292 (631)
Q Consensus 214 l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~-~vV~A~G~~s~~~~~l~ 292 (631)
+...|.+.+++.|++|++++.+++++.+++|+|+||.... +|+ ...++|+ .||+|+|.++.. .+|.
T Consensus 215 ~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-----~~~-------~~~i~a~~aVilAtGGf~~N-~em~ 281 (584)
T PRK12835 215 LVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVER-----EGR-------TLRIGARRGVILATGGFDHD-MDWR 281 (584)
T ss_pred HHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEe-----CCc-------EEEEEeceeEEEecCcccCC-HHHH
Confidence 4556777888889999999999999998778999997642 333 2568997 699999999984 5555
Q ss_pred HHcCCCc----ccccCCcceeeEEEEEEeecCC
Q 006778 293 KNFKLRE----KSHAQHQTYALGIKEVWEIDEG 321 (631)
Q Consensus 293 ~~~g~~~----~~~~~~~~~~~g~~~~~~~~~~ 321 (631)
+++.... .....+...|.|+++...+...
T Consensus 282 ~~y~p~~~~~~~~~g~~~~tGDGi~ma~~~GA~ 314 (584)
T PRK12835 282 KEYLPELERKDWSFGNPANTGDGIRAGEKVGAA 314 (584)
T ss_pred HHhCCCCCcCcccCCCCCCCcHHHHHHHHcCCC
Confidence 5554321 0122345567777766665554
No 106
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.22 E-value=2.5e-10 Score=127.87 Aligned_cols=169 Identities=23% Similarity=0.218 Sum_probs=97.7
Q ss_pred cCccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-cccccC-----hHhHHHHhhhhhhcCC--
Q 006778 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE-----PRALNELLPQWKQEEA-- 175 (631)
Q Consensus 104 ~~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g~~i~-----~~~l~~l~~~~~~~~~-- 175 (631)
..+++||||||+|.|||+||+.+++. |++|+||||....++++. +++.+. .......+.++.....
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~------G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~ 86 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRA------GRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGL 86 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHc------CCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCC
Confidence 34579999999999999999999998 999999999987654332 222111 0111111111111000
Q ss_pred --C--eeee--ccCcceEeeccCCcccCCCC-----------CCCCC-cEEE----eHHHHHHHHHHHHHhcCcEEecCc
Q 006778 176 --P--IRVP--VSSDKFWFLTKDRAFSLPSP-----------FSNRG-NYVI----SLSQLVRWLGGKAEELGVEIYPGF 233 (631)
Q Consensus 176 --~--~~~~--~~~~~~~~l~~~~~~~~p~~-----------~~~~~-~~~v----~~~~l~~~L~~~a~~~Gv~i~~g~ 233 (631)
+ +... ...+.+.|+.. .++.+... .+... .+.. ....+.+.|.+++++.||+|+.++
T Consensus 87 ~d~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~ 165 (541)
T PRK07804 87 CDPDAVRSLVAEGPRAVRELVA-LGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHA 165 (541)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECe
Confidence 0 0000 00011111110 11111100 00000 0001 235788899999989999999999
Q ss_pred eEEEEEEcCCCcEEEEEeCCCccccCCCccccccCc-eEEEcCEEEEecCCCCch
Q 006778 234 AASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRG-VELRGRITLLAEGCRGSL 287 (631)
Q Consensus 234 ~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g-~~i~a~~vV~A~G~~s~~ 287 (631)
.|++++.+++|+|.+|.+.+.. .|.. ++ ..+.|+.||+|||+++.+
T Consensus 166 ~v~~Li~~~~g~v~Gv~~~~~~---~~~~-----~g~~~i~Ak~VIlATGG~~~~ 212 (541)
T PRK07804 166 LALDLLTDGTGAVAGVTLHVLG---EGSP-----DGVGAVHAPAVVLATGGLGQL 212 (541)
T ss_pred EeeeeEEcCCCeEEEEEEEecc---CCCC-----CcEEEEEcCeEEECCCCCCCC
Confidence 9999998766788888765311 0110 02 478999999999999864
No 107
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.21 E-value=1.2e-08 Score=113.64 Aligned_cols=65 Identities=22% Similarity=0.172 Sum_probs=51.9
Q ss_pred EEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCC
Q 006778 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 208 ~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
.++...+...|...++++|++++.+++|+++..++ + .++|.+.+ ..|+ ..+++|+.||.|+|.|+
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~-~-~~~v~~~~----~~g~-------~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREG-G-LWRVETRD----ADGE-------TRTVRARALVNAAGPWV 215 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC-C-EEEEEEEe----CCCC-------EEEEEecEEEECCCccH
Confidence 46788899999999999999999999999998764 3 34676655 1132 25799999999999996
No 108
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.20 E-value=6e-11 Score=132.20 Aligned_cols=95 Identities=14% Similarity=0.184 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHh-cCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcC-EEEEecCCCCchhHH
Q 006778 213 QLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEK 290 (631)
Q Consensus 213 ~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~-~vV~A~G~~s~~~~~ 290 (631)
.+...|.+.+.+ .|++|+++++|++++.+ +++|++|.... +|+ ..+++|+ .||+|+|.++.. +.
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~-----~g~-------~~~i~A~k~VIlAtGG~~~n-~~ 239 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVE-DGRVVGAVVER-----GGE-------RRRVRARRGVLLAAGGFEQN-DD 239 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEec-CCEEEEEEEEE-----CCc-------EEEEEeCceEEEeCCCccCC-HH
Confidence 455556666655 49999999999999887 47898987642 233 2578996 899999999885 45
Q ss_pred HHHHcCCCc---ccccCCcceeeEEEEEEeecCC
Q 006778 291 LIKNFKLRE---KSHAQHQTYALGIKEVWEIDEG 321 (631)
Q Consensus 291 l~~~~g~~~---~~~~~~~~~~~g~~~~~~~~~~ 321 (631)
|.+.|.... .....+...|.|+++..++...
T Consensus 240 m~~~~~~~~~~~~~~~~~~~tGDGi~ma~~aGA~ 273 (513)
T PRK12837 240 MRARYGVPGSARDTMGGPGNTGLAHQAAIAVGAD 273 (513)
T ss_pred HHHHhccccccCCCCCCCCCCcHHHHHHHHcCCC
Confidence 666665210 0233455678888776666554
No 109
>PRK12839 hypothetical protein; Provisional
Probab=99.19 E-value=2.3e-10 Score=128.66 Aligned_cols=100 Identities=23% Similarity=0.259 Sum_probs=67.5
Q ss_pred EeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEE-EcCEEEEecCCCCch
Q 006778 209 ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVEL-RGRITLLAEGCRGSL 287 (631)
Q Consensus 209 v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i-~a~~vV~A~G~~s~~ 287 (631)
+....|...|.+.+++.|++|+.++.+++++.+++|+|+||...+ ++|+ ..+ .++.||+|+|.++..
T Consensus 211 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~----~~g~--------~~i~aak~VVLAtGGf~~n 278 (572)
T PRK12839 211 VNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQG----PDGA--------VTVEATRGVVLATGGFPND 278 (572)
T ss_pred ccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEe----CCCc--------EEEEeCCEEEEcCCCcccC
Confidence 345677888999999999999999999999887668899997654 2332 344 458999999999985
Q ss_pred hHHHHHHcCCCcc------cccCCcceeeEEEEEEeecCC
Q 006778 288 SEKLIKNFKLREK------SHAQHQTYALGIKEVWEIDEG 321 (631)
Q Consensus 288 ~~~l~~~~g~~~~------~~~~~~~~~~g~~~~~~~~~~ 321 (631)
.. +.+.+..... ....+...|.|+++..++...
T Consensus 279 ~~-~~~~~~p~~~~~~~~~~~~~~~~tGdGi~ma~~~GA~ 317 (572)
T PRK12839 279 VD-RRKELFPRTPTGREHWTLAPAETTGDGISLAESVGAR 317 (572)
T ss_pred HH-HHHHhCCCCCCCCccccCCCCCCCcHHHHHHHHhCCc
Confidence 44 3333322210 011234567777665555443
No 110
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=9.6e-11 Score=131.54 Aligned_cols=165 Identities=21% Similarity=0.268 Sum_probs=93.8
Q ss_pred cCccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC-CCCcc-ccccccC-----hHhHHHHhhhhhhcC--
Q 006778 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAHI-ISGNVFE-----PRALNELLPQWKQEE-- 174 (631)
Q Consensus 104 ~~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~-~g~~~-~~g~~i~-----~~~l~~l~~~~~~~~-- 174 (631)
+..++||||||+|.|||+||+.+ +. |++|+||||.+. .|+.+ .+++.+. .....+.+.++....
T Consensus 4 ~~~~~DVlVVG~G~AGl~AAi~A-~~------G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~ 76 (543)
T PRK06263 4 EIMITDVLIIGSGGAGARAAIEA-ER------GKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAY 76 (543)
T ss_pred ceeccCEEEECccHHHHHHHHHH-hc------CCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 34578999999999999999999 77 999999999864 33322 2222221 111112222111100
Q ss_pred --CC--eeee--ccCcceEeeccCCcccCCCC------CCCCCc-------EE--EeHHHHHHHHHHHHHhcCcEEecCc
Q 006778 175 --AP--IRVP--VSSDKFWFLTKDRAFSLPSP------FSNRGN-------YV--ISLSQLVRWLGGKAEELGVEIYPGF 233 (631)
Q Consensus 175 --~~--~~~~--~~~~~~~~l~~~~~~~~p~~------~~~~~~-------~~--v~~~~l~~~L~~~a~~~Gv~i~~g~ 233 (631)
.+ +... ...+.+.|+.. .++.+... ....++ +. .....+...|.+.+++.||+|++++
T Consensus 77 ~~d~~lv~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t 155 (543)
T PRK06263 77 LNDPKLVEILVKEAPKRLKDLEK-FGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEV 155 (543)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-cCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCe
Confidence 00 0000 00111111110 11111000 000000 10 1235678889888888999999999
Q ss_pred eEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCc
Q 006778 234 AASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 234 ~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
.+++++.+++++|+||...+ .++|+. ..+.|+.||+|||+.+.
T Consensus 156 ~v~~Li~~~~~~v~Gv~~~~---~~~g~~-------~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 156 MAIKLIVDENREVIGAIFLD---LRNGEI-------FPIYAKATILATGGAGQ 198 (543)
T ss_pred EeeeeEEeCCcEEEEEEEEE---CCCCcE-------EEEEcCcEEECCCCCCC
Confidence 99999987655588876532 023332 57999999999999875
No 111
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=2.7e-10 Score=129.63 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHc
Q 006778 216 RWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNF 295 (631)
Q Consensus 216 ~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~ 295 (631)
+.|.+.+++.||+|++++.+++++.++ ++|+||.+.+ ..+|+. ..+.||.||+|||+.+.+.
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~-g~V~GV~~~~---~~~g~~-------~~i~AkaVVLATGG~g~~~------- 235 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVD-GRARGIVARN---LVTGEI-------ERHTADAVVLATGGYGNVF------- 235 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeC-CEEEEEEEEE---CCCCcE-------EEEECCEEEECCCCcccCC-------
Confidence 567777888899999999999998764 7898988754 123332 5789999999999998631
Q ss_pred CCCcccccCCcceeeEEEEEEeecCC
Q 006778 296 KLREKSHAQHQTYALGIKEVWEIDEG 321 (631)
Q Consensus 296 g~~~~~~~~~~~~~~g~~~~~~~~~~ 321 (631)
... ...+...|.|+.+.+++...
T Consensus 236 ~~t---t~~~~~tGdGi~mA~~aGA~ 258 (640)
T PRK07573 236 YLS---TNAMGSNATAIWRAHKKGAY 258 (640)
T ss_pred CCC---CCCCCcCcHHHHHHHHcCCC
Confidence 111 22334555665554444443
No 112
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.18 E-value=1.9e-10 Score=129.34 Aligned_cols=207 Identities=18% Similarity=0.177 Sum_probs=109.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC--CCCCcc-ccccccC---hH---------hHHHHhhhh
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA--EVGAHI-ISGNVFE---PR---------ALNELLPQW 170 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~--~~g~~~-~~g~~i~---~~---------~l~~l~~~~ 170 (631)
+++||||||+|.|||+||+.+++. |++|+||||.+ ..|+.+ .+++.+. .. ....++.++
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~------G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~ 76 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADA------GKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDW 76 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHH
Confidence 579999999999999999999999 99999999998 566654 2332221 10 111122222
Q ss_pred hhcCC---Ce--------eeec---cCcceEeeccCCcccCCCC---------C-C----CCCc-EEE--eHHHHHHHHH
Q 006778 171 KQEEA---PI--------RVPV---SSDKFWFLTKDRAFSLPSP---------F-S----NRGN-YVI--SLSQLVRWLG 219 (631)
Q Consensus 171 ~~~~~---~~--------~~~~---~~~~~~~l~~~~~~~~p~~---------~-~----~~~~-~~v--~~~~l~~~L~ 219 (631)
..... +. ...+ ..+.+.|+.+ .++.+... . . .... +.. ....+.+.|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~s~e~i~wL~~-~Gv~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~ 155 (549)
T PRK12834 77 LGSAGFDRPEDHWPRQWAEAYVDFAAGEKRSWLHS-LGLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFE 155 (549)
T ss_pred HhccCCCCccccchHHHHHHHHHhCCHHHHHHHHH-cCCeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHHH
Confidence 11100 00 0000 1122222221 11211000 0 0 0000 000 1234667776
Q ss_pred HHHH---hc-CcEEecCceEEEEEEcCCCcEEEEEeCCC--ccccCCCccc-cccCceEEEcCEEEEecCCCCchhHHHH
Q 006778 220 GKAE---EL-GVEIYPGFAASEILYDADNKVIGIGTNDM--GIAKDGSKKE-NFQRGVELRGRITLLAEGCRGSLSEKLI 292 (631)
Q Consensus 220 ~~a~---~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~--g~~~~G~~~~-~f~~g~~i~a~~vV~A~G~~s~~~~~l~ 292 (631)
+.++ +. ||+|++++++++++.+ +|+|+||...+. +...+|+... +-..-..+.||.||+|||.++...+.+
T Consensus 156 ~~~~~~~~~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n~em~- 233 (549)
T PRK12834 156 RRVREAAARGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGNHELV- 233 (549)
T ss_pred HHHHHHHHhCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccCHHHH-
Confidence 6654 23 5999999999999986 488999986321 0000000000 000015789999999999999965544
Q ss_pred HHcCCCc------c-cccCC-cceeeEEEEEEeecCC
Q 006778 293 KNFKLRE------K-SHAQH-QTYALGIKEVWEIDEG 321 (631)
Q Consensus 293 ~~~g~~~------~-~~~~~-~~~~~g~~~~~~~~~~ 321 (631)
+++.... . ....+ ...|.|+++..++...
T Consensus 234 ~~~~p~~~~~~~~~~~~~~~~~~tGdGi~ma~~aGA~ 270 (549)
T PRK12834 234 RRNWPERLGTPPKDMVSGVPAHVDGRMLGIAEAAGAR 270 (549)
T ss_pred HHhCccccCCCccccccCCCCCCCcHHHHHHHHcCCc
Confidence 4442210 0 01122 2457677766555554
No 113
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.18 E-value=7.7e-11 Score=127.35 Aligned_cols=144 Identities=26% Similarity=0.398 Sum_probs=90.8
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHh---hhhhhcCCCeeeec
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELL---PQWKQEEAPIRVPV 181 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~---~~~~~~~~~~~~~~ 181 (631)
+++||+||||+||||..+|++++++ |.+|+++|+...+|+.|++-+|++.++|.... ..+...........
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~------G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~ 75 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL------GLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISA 75 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC------CCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceec
Confidence 3579999999999999999999999 99999999997899999999999999986543 22332110000000
Q ss_pred cCcceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCC
Q 006778 182 SSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (631)
Q Consensus 182 ~~~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~ 261 (631)
.. ..++++..+..... + -..+...+....+++||+++.|... +.+++.| .|...+
T Consensus 76 ~~---------~~id~~~~~~~k~~-v--~~~~~~~~~~l~~~~~V~vi~G~a~----f~~~~~v-~V~~~~-------- 130 (454)
T COG1249 76 EV---------PKIDFEKLLARKDK-V--VRLLTGGVEGLLKKNGVDVIRGEAR----FVDPHTV-EVTGED-------- 130 (454)
T ss_pred CC---------CCcCHHHHHHHHHH-H--HHHHhhhHHHHHhhCCCEEEEEEEE----ECCCCEE-EEcCCC--------
Confidence 00 01111111000000 0 0122233444455679999988754 4333433 333211
Q ss_pred ccccccCceEEEcCEEEEecCCCCc
Q 006778 262 KKENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 262 ~~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
..+++|+.+|+|||+++.
T Consensus 131 -------~~~~~a~~iiIATGS~p~ 148 (454)
T COG1249 131 -------KETITADNIIIATGSRPR 148 (454)
T ss_pred -------ceEEEeCEEEEcCCCCCc
Confidence 378999999999999875
No 114
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.17 E-value=1.1e-10 Score=127.12 Aligned_cols=160 Identities=20% Similarity=0.266 Sum_probs=90.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-cccccC----hHhHHHHhhhhhhcC----CC
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE----PRALNELLPQWKQEE----AP 176 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g~~i~----~~~l~~l~~~~~~~~----~~ 176 (631)
+++||||||+|.|||+||+.++ . |++|+||||.+..++++. +++.+. .......+.++.... .+
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~------G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~ 75 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-K------DLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNL 75 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-c------CCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 4689999999999999999974 5 999999999987766532 222221 111112222211100 00
Q ss_pred --eeee--ccCcceEeeccCCcccCCC---------CCCCCCcEE-----EeHHHHHHHHHHHHHh-cCcEEecCceEEE
Q 006778 177 --IRVP--VSSDKFWFLTKDRAFSLPS---------PFSNRGNYV-----ISLSQLVRWLGGKAEE-LGVEIYPGFAASE 237 (631)
Q Consensus 177 --~~~~--~~~~~~~~l~~~~~~~~p~---------~~~~~~~~~-----v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~ 237 (631)
+... ...+.+.|+.+ .++.+.. .-......+ .....+.+.|.+.+++ .||+|++++.+++
T Consensus 76 ~lv~~~~~~s~e~i~wL~~-~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~ 154 (433)
T PRK06175 76 EAVKILANESIENINKLID-MGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVD 154 (433)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeee
Confidence 0000 00111111110 0111100 000000011 1234677888888875 5999999999999
Q ss_pred EEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCc
Q 006778 238 ILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 238 i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
++.++ ++|.+|...+ +|+ ..++.||.||+|+|+.+.
T Consensus 155 Li~~~-~~v~Gv~~~~-----~g~-------~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 155 IIEND-NTCIGAICLK-----DNK-------QINIYSKVTILATGGIGG 190 (433)
T ss_pred eEecC-CEEEEEEEEE-----CCc-------EEEEEcCeEEEccCcccc
Confidence 98764 6787865432 121 147899999999999775
No 115
>PLN02815 L-aspartate oxidase
Probab=99.17 E-value=1.6e-10 Score=130.07 Aligned_cols=191 Identities=17% Similarity=0.219 Sum_probs=108.2
Q ss_pred cCccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-ccccc----C-hHhHHHHhhhhhhcCC--
Q 006778 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVF----E-PRALNELLPQWKQEEA-- 175 (631)
Q Consensus 104 ~~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g~~i----~-~~~l~~l~~~~~~~~~-- 175 (631)
+..++||||||+|.|||+||+.+++. | +|+||||.+..++++. +++.+ . .......+.++.....
T Consensus 26 ~~~~~DVlVVG~G~AGl~AAl~Aae~------G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~ 98 (594)
T PLN02815 26 STKYFDFLVIGSGIAGLRYALEVAEY------G-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFL 98 (594)
T ss_pred cccccCEEEECccHHHHHHHHHHhhC------C-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCC
Confidence 34578999999999999999999998 9 9999999987766442 22221 1 1111122222211100
Q ss_pred --Ce--ee--eccCcceEeeccCCcccCCCC------CCCCC-----c--EE--EeHHHHHHHHHHHHHhc-CcEEecCc
Q 006778 176 --PI--RV--PVSSDKFWFLTKDRAFSLPSP------FSNRG-----N--YV--ISLSQLVRWLGGKAEEL-GVEIYPGF 233 (631)
Q Consensus 176 --~~--~~--~~~~~~~~~l~~~~~~~~p~~------~~~~~-----~--~~--v~~~~l~~~L~~~a~~~-Gv~i~~g~ 233 (631)
+. .. ....+.+.|+.. .++.+... ....+ . +. .....+...|.+.+++. |++|+.++
T Consensus 99 ~d~~lv~~~~~~s~e~i~~L~~-~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~ 177 (594)
T PLN02815 99 CDEETVRVVCTEGPERVKELIA-MGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHH 177 (594)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEece
Confidence 00 00 000111111111 11111100 00000 0 00 12356788888888765 89999999
Q ss_pred eEEEEEEcCCC---cEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceee
Q 006778 234 AASEILYDADN---KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYAL 310 (631)
Q Consensus 234 ~v~~i~~~~~g---~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~ 310 (631)
.+++++.+++| +|+||...+ ..+|+. ..+.|+.||+|||+.+.+- ... ...+...|.
T Consensus 178 ~~~~Li~~~~g~~~~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~g~~~-------~~t---tn~~~~tGD 237 (594)
T PLN02815 178 FAIDLLTSQDGGSIVCHGADVLD---TRTGEV-------VRFISKVTLLASGGAGHIY-------PST---TNPLVATGD 237 (594)
T ss_pred EhheeeeecCCCccEEEEEEEEE---cCCCeE-------EEEEeceEEEcCCcceeeC-------CCC---CCCCCcccH
Confidence 99999986544 278887643 123432 5789999999999998532 211 233456677
Q ss_pred EEEEEEeecCCC
Q 006778 311 GIKEVWEIDEGK 322 (631)
Q Consensus 311 g~~~~~~~~~~~ 322 (631)
|+.+.+++....
T Consensus 238 Gi~mA~~aGA~l 249 (594)
T PLN02815 238 GIAMAHRAQAVV 249 (594)
T ss_pred HHHHHHHcCCcE
Confidence 776665555443
No 116
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=2.7e-10 Score=128.73 Aligned_cols=188 Identities=15% Similarity=0.148 Sum_probs=105.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-cccccC--------hHhHHHHhhhhhhcCC--
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE--------PRALNELLPQWKQEEA-- 175 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g~~i~--------~~~l~~l~~~~~~~~~-- 175 (631)
..||||||+|+|||+||+.+++. |++|+||||.+..++++. +++.+. .......+.+......
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~------G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~ 76 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEA------GVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFL 76 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHc------CCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCc
Confidence 46999999999999999999998 999999999987655442 212111 0111111111111000
Q ss_pred --C--eeeec--cCcceEeeccCCcccCCCC------CCCCCcEE---------EeHHHHHHHHHHHHHhcC----cEEe
Q 006778 176 --P--IRVPV--SSDKFWFLTKDRAFSLPSP------FSNRGNYV---------ISLSQLVRWLGGKAEELG----VEIY 230 (631)
Q Consensus 176 --~--~~~~~--~~~~~~~l~~~~~~~~p~~------~~~~~~~~---------v~~~~l~~~L~~~a~~~G----v~i~ 230 (631)
+ ....+ ..+.+.++. ..++.+... ....++.. .....+...|.+.+++.+ |+++
T Consensus 77 ~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~ 155 (589)
T PRK08641 77 ANQPPVKAMCEAAPGIIHLLD-RMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKY 155 (589)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEE
Confidence 0 00000 001111111 011111100 00001110 123567788888776543 8899
Q ss_pred cCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceee
Q 006778 231 PGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYAL 310 (631)
Q Consensus 231 ~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~ 310 (631)
.++.+++++.+++|+|.||...+. .+|+. ..+.|+.||+|||+.+.+- ... ...+...|.
T Consensus 156 ~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~y-------~~t---t~~~~~tGd 215 (589)
T PRK08641 156 EGWEFLGAVLDDEGVCRGIVAQDL---FTMEI-------ESFPADAVIMATGGPGIIF-------GKS---TNSTINTGS 215 (589)
T ss_pred eeEEEEEEEECCCCEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCCcCCC-------CCC---CCCCCCchH
Confidence 999999999876688999987541 12221 4689999999999998632 211 334455676
Q ss_pred EEEEEEeecCC
Q 006778 311 GIKEVWEIDEG 321 (631)
Q Consensus 311 g~~~~~~~~~~ 321 (631)
|+.+.++....
T Consensus 216 G~~mA~~aGA~ 226 (589)
T PRK08641 216 AASRVYQQGAY 226 (589)
T ss_pred HHHHHHHcCCC
Confidence 66655555544
No 117
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.17 E-value=1.1e-10 Score=141.08 Aligned_cols=203 Identities=20% Similarity=0.235 Sum_probs=114.6
Q ss_pred cCccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-cccccC---hHh---------HHHHhhh-
Q 006778 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE---PRA---------LNELLPQ- 169 (631)
Q Consensus 104 ~~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g~~i~---~~~---------l~~l~~~- 169 (631)
++.++||||||+|.||++||+.+++. |++|+||||.+..|+++. +++.+. .+. ...+..+
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~------Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~ 479 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASC------GAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDT 479 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHH
Confidence 35679999999999999999999998 999999999998887652 222221 000 0001111
Q ss_pred hhhc----CCC--eee--eccCcceEeeccCCcccCC-----------CCCC---C-CCcEEEeHHHHHHHHHHHHHh--
Q 006778 170 WKQE----EAP--IRV--PVSSDKFWFLTKDRAFSLP-----------SPFS---N-RGNYVISLSQLVRWLGGKAEE-- 224 (631)
Q Consensus 170 ~~~~----~~~--~~~--~~~~~~~~~l~~~~~~~~p-----------~~~~---~-~~~~~v~~~~l~~~L~~~a~~-- 224 (631)
+... ..+ +.. .-..+.+.|+.+ .++.+. .... . .+...-....+.+.|.+.+++
T Consensus 480 ~~~~~~~~~d~~lv~~~~~~s~e~idwL~~-~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~ 558 (1167)
T PTZ00306 480 HLSGKGGHCDPGLVKTLSVKSADAISWLSS-LGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKL 558 (1167)
T ss_pred HHhccCCCCCHHHHHHHHHhhHHHHHHHHH-cCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhc
Confidence 1000 000 000 001111122211 111110 0000 0 000000124566777777765
Q ss_pred -cCcEEecCceEEEEEEcCC----C----cEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhH--HHHH
Q 006778 225 -LGVEIYPGFAASEILYDAD----N----KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE--KLIK 293 (631)
Q Consensus 225 -~Gv~i~~g~~v~~i~~~~~----g----~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~--~l~~ 293 (631)
.||+|++++++++++.+++ | +|+||...+.+ +.+|+. ..+.||.||+|||.++.... +|.+
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~-~~~g~~-------~~i~AkaVILATGGf~~N~e~~~m~~ 630 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQAS-DASGQV-------MDLLADAVILATGGFSNDHTPNSLLR 630 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecc-cCCCcE-------EEEEeceEEEecCCcccCccHHHHHH
Confidence 4899999999999998752 2 78899876410 114442 67999999999999997642 4655
Q ss_pred HcCCCcc---cccCCcceeeEEEEEEeecCC
Q 006778 294 NFKLREK---SHAQHQTYALGIKEVWEIDEG 321 (631)
Q Consensus 294 ~~g~~~~---~~~~~~~~~~g~~~~~~~~~~ 321 (631)
.|..... ....+...|.|+++..++...
T Consensus 631 ~y~p~~~~~~~~~~~~~tGDGi~mA~~aGA~ 661 (1167)
T PTZ00306 631 EYAPQLSGFPTTNGPWATGDGVKLARKLGAT 661 (1167)
T ss_pred HhCccccCCCCCCCCCcccHHHHHHHHcCCc
Confidence 5543210 122345667777766555544
No 118
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.16 E-value=2.7e-10 Score=125.76 Aligned_cols=56 Identities=34% Similarity=0.516 Sum_probs=50.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHh
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELL 167 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~ 167 (631)
.+|||+||||||||+++|..|++. |++|+|+|+.+.+|+.|.+-+|++.+.|.+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~------G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a 58 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADL------GLETVCVERYSTLGGVCLNVGCIPSKALLHVA 58 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCcccccccCCCcccHHHHHHHH
Confidence 369999999999999999999999 99999999987899999999999998876543
No 119
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.16 E-value=6.9e-10 Score=125.50 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhcCcEEecCceEEEEEEcCC---CcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch
Q 006778 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDAD---NKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~---g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
...+.+.|.+.+++.||+|+.++.|++++.+++ |+|.||...+ .++|+. ..+.|+.||+|||+.+.+
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYE---LATGEI-------HVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEE---cCCCeE-------EEEEeCeEEECCCCCccc
Confidence 356888899999999999999999999987653 7888887632 122321 478999999999999854
No 120
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.15 E-value=7.5e-10 Score=121.75 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=58.4
Q ss_pred EEEeHHHHHHHHHHHHHh----cC--cEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEe
Q 006778 207 YVISLSQLVRWLGGKAEE----LG--VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLA 280 (631)
Q Consensus 207 ~~v~~~~l~~~L~~~a~~----~G--v~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A 280 (631)
..++...+.+.|.+.+++ .| ++|+++++|++|..++ +.++.|.+.+ | +++||.||+|
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~---------------G-~i~A~~VVva 268 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNR---------------G-EIRARFVVVS 268 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECC---------------C-EEEeCEEEEC
Confidence 468889999999999998 77 8899999999998765 3455687765 4 6999999999
Q ss_pred cCCCCchhHHHHHHcCCC
Q 006778 281 EGCRGSLSEKLIKNFKLR 298 (631)
Q Consensus 281 ~G~~s~~~~~l~~~~g~~ 298 (631)
+|.++ ..+.+..|+.
T Consensus 269 AG~~S---~~La~~~Gi~ 283 (497)
T PTZ00383 269 ACGYS---LLFAQKMGYG 283 (497)
T ss_pred cChhH---HHHHHHhCCC
Confidence 99997 3566666654
No 121
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.15 E-value=7.1e-10 Score=122.22 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=59.3
Q ss_pred cEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCC
Q 006778 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
...++...+.+.|.+.+++.|++|+++++|+++..++++.+ .|.+.+. .+|+ +.+++||+||+|+|.++
T Consensus 172 ~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~---~~g~-------~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 172 GTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNT---RTGG-------KRTLNTRFVFVGAGGGA 240 (483)
T ss_pred CEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeec---cCCc-------eEEEECCEEEECCCcch
Confidence 55689999999999999999999999999999987654433 3443220 1121 24799999999999997
Q ss_pred chhHHHHHHcCCC
Q 006778 286 SLSEKLIKNFKLR 298 (631)
Q Consensus 286 ~~~~~l~~~~g~~ 298 (631)
..+.+.+|+.
T Consensus 241 ---~~La~~~Gi~ 250 (483)
T TIGR01320 241 ---LPLLQKSGIP 250 (483)
T ss_pred ---HHHHHHcCCC
Confidence 4566667765
No 122
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.14 E-value=3.2e-10 Score=128.13 Aligned_cols=89 Identities=22% Similarity=0.311 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHH
Q 006778 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKL 291 (631)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l 291 (631)
..+...|.+.+++.|++|++++.+++++.++ |+|.||...+ ..+|+. ..+.|+.||+|||.++.+..
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~-g~v~Gv~~~~---~~~g~~-------~~i~Ak~VVlAtGG~~~~~~-- 195 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD-GRVRGVVAYD---LKTGEI-------VFFRAKAVVLATGGYGRIYK-- 195 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-CEEEEEEEEE---CCCCcE-------EEEECCeEEECCCcccCCCC--
Confidence 4677888888888899999999999998864 7888887543 122321 57899999999999986432
Q ss_pred HHHcCCCcccccCCcceeeEEEEEEeecCC
Q 006778 292 IKNFKLREKSHAQHQTYALGIKEVWEIDEG 321 (631)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 321 (631)
.. ...+...|.|+.+.+++...
T Consensus 196 -----~~---~~~~~~tGdGi~ma~~aGa~ 217 (566)
T TIGR01812 196 -----TT---TNAHINTGDGMAMALRAGVP 217 (566)
T ss_pred -----CC---CCCCCcccHHHHHHHHcCCC
Confidence 11 22344556666555544443
No 123
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.14 E-value=9.5e-11 Score=128.58 Aligned_cols=142 Identities=20% Similarity=0.248 Sum_probs=87.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
+|||+||||||||++||+.|+++ |++|+|+|+. .+|+.+.+.+|++.+.|............. ..+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~------G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~-------~~~ 67 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH------GAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDA-------AGY 67 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC------CCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhh-------Hhc
Confidence 59999999999999999999999 9999999995 689999999999999875443222211000 000
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
.+......+++...+... .-....+.+.+.+.+++.||+++.+ ++..+. . ..+ .|. .+
T Consensus 68 g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~--~-~~v-~v~-~~------------- 125 (446)
T TIGR01424 68 GWTVGKARFDWKKLLQKK---DDEIARLSGLYKRLLANAGVELLEG-RARLVG--P-NTV-EVL-QD------------- 125 (446)
T ss_pred CcCCCCCCcCHHHHHHHH---HHHHHHHHHHHHHHHHhCCcEEEEE-EEEEec--C-CEE-EEe-cC-------------
Confidence 000000001111000000 0001234455666777789999877 444432 2 222 232 22
Q ss_pred cCceEEEcCEEEEecCCCCc
Q 006778 267 QRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (631)
|.++++|.||+|||+++.
T Consensus 126 --g~~~~~d~lIiATGs~p~ 143 (446)
T TIGR01424 126 --GTTYTAKKILIAVGGRPQ 143 (446)
T ss_pred --CeEEEcCEEEEecCCcCC
Confidence 568999999999998763
No 124
>PLN02546 glutathione reductase
Probab=99.13 E-value=3e-10 Score=126.91 Aligned_cols=143 Identities=19% Similarity=0.228 Sum_probs=87.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEee---------CCCCCCccccccccChHhHHHHhhhhhhcCCC
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEK---------GAEVGAHIISGNVFEPRALNELLPQWKQEEAP 176 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk---------~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~ 176 (631)
.+|||+||||||+|+.+|+.|+++ |++|+|+|+ ...+|+.|++-+|++.+.|.............
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~------G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~ 151 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNF------GASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEES 151 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhh
Confidence 469999999999999999999999 999999996 24589999999999999885432221111000
Q ss_pred eeeeccCcceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCcc
Q 006778 177 IRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (631)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~ 256 (631)
....+. . .....+++...+.... -...++.+++.+.+++.||+++.|... .+ +. .. |.+ +
T Consensus 152 ~~~g~~-----~-~~~~~~d~~~~~~~k~---~~~~~l~~~~~~~l~~~gV~~i~G~a~-~v--d~-~~---V~v-~--- 211 (558)
T PLN02546 152 RGFGWK-----Y-ETEPKHDWNTLIANKN---AELQRLTGIYKNILKNAGVTLIEGRGK-IV--DP-HT---VDV-D--- 211 (558)
T ss_pred hhcCcc-----c-CCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHhCCcEEEEeEEE-Ec--cC-CE---EEE-C---
Confidence 000000 0 0000111111000000 011344566777777889999977432 22 22 22 333 2
Q ss_pred ccCCCccccccCceEEEcCEEEEecCCCCc
Q 006778 257 AKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
|.++.+|.||+|+|++..
T Consensus 212 ------------G~~~~~D~LVIATGs~p~ 229 (558)
T PLN02546 212 ------------GKLYTARNILIAVGGRPF 229 (558)
T ss_pred ------------CEEEECCEEEEeCCCCCC
Confidence 568999999999998874
No 125
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.13 E-value=3.5e-10 Score=127.62 Aligned_cols=167 Identities=17% Similarity=0.240 Sum_probs=94.8
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-cccccC-----hHhHHHHhhhhhhcCC---
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE-----PRALNELLPQWKQEEA--- 175 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g~~i~-----~~~l~~l~~~~~~~~~--- 175 (631)
+.++||||||+|.|||+||+.+++. ++|++|+|+||....++++. +++.+. .......+.+......
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~----g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~ 77 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEA----NPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLC 77 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHh----CCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCC
Confidence 3578999999999999999999986 23589999999977666542 222111 1111111111111100
Q ss_pred -C--eee--eccCcceEeeccCCcccCCCCC------CCCC------cEE-E--eHHHHHHHHHHHHHhc-CcEEecCce
Q 006778 176 -P--IRV--PVSSDKFWFLTKDRAFSLPSPF------SNRG------NYV-I--SLSQLVRWLGGKAEEL-GVEIYPGFA 234 (631)
Q Consensus 176 -~--~~~--~~~~~~~~~l~~~~~~~~p~~~------~~~~------~~~-v--~~~~l~~~L~~~a~~~-Gv~i~~g~~ 234 (631)
+ +.. ....+.+.|+. ..++.+.... ...+ .+. . ....+...|.+.+.+. +++++.++.
T Consensus 78 d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~ 156 (582)
T PRK09231 78 EQDVVEYFVHHCPTEMTQLE-QWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHF 156 (582)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeE
Confidence 0 000 00011111111 1111111000 0000 011 1 2346778888877775 799999999
Q ss_pred EEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch
Q 006778 235 ASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 235 v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
+++++.++ ++|.||..-+ ..+|+. ..+.|+.||+|||+.+.+
T Consensus 157 v~~Li~~~-g~v~Gv~~~~---~~~g~~-------~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 157 VLDILVDD-GHVRGLVAMN---MMEGTL-------VQIRANAVVMATGGAGRV 198 (582)
T ss_pred EEEEEEeC-CEEEEEEEEE---cCCCcE-------EEEECCEEEECCCCCcCC
Confidence 99998764 7888876532 123322 579999999999999864
No 126
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.13 E-value=9.2e-10 Score=124.37 Aligned_cols=166 Identities=23% Similarity=0.330 Sum_probs=94.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-cccccC-------h-HhHHHHhhhhhhcCC-
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE-------P-RALNELLPQWKQEEA- 175 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g~~i~-------~-~~l~~l~~~~~~~~~- 175 (631)
.++||||||||+|||+||+.|++. ++|++|+||||....++++. +++.+. + ......+.+......
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~----g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~ 77 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRL----DPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDY 77 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHh----cCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999999986 22589999999876565432 221121 1 111111111100000
Q ss_pred ---C--eee--eccCcceEeeccCCcccCCCC-------------CCCCCcEEE--eHHHHHHHHHHHHHhcCcEEecCc
Q 006778 176 ---P--IRV--PVSSDKFWFLTKDRAFSLPSP-------------FSNRGNYVI--SLSQLVRWLGGKAEELGVEIYPGF 233 (631)
Q Consensus 176 ---~--~~~--~~~~~~~~~l~~~~~~~~p~~-------------~~~~~~~~v--~~~~l~~~L~~~a~~~Gv~i~~g~ 233 (631)
+ ... ....+.+.++. ..++.++.. ......+.. ....+...|.+.+++.||+|+.++
T Consensus 78 l~d~~~v~~l~~~a~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t 156 (575)
T PRK05945 78 LADQDAVAILTQEAPDVIIDLE-HLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEW 156 (575)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCc
Confidence 0 000 00001111111 111111100 000001111 235688889998988999999999
Q ss_pred eEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch
Q 006778 234 AASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 234 ~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
.|++++.+ +++|.||..-+ .++|+ ...+.|+.||+|||+++.+
T Consensus 157 ~v~~L~~~-~g~v~Gv~~~~---~~~g~-------~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 157 YVMRLILE-DNQAKGVVMYH---IADGR-------LEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred EEEEEEEE-CCEEEEEEEEE---cCCCe-------EEEEECCEEEECCCCCcCC
Confidence 99999876 47888876432 12232 2468999999999999863
No 127
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.12 E-value=7.8e-10 Score=121.05 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=91.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhh----hhcCCCeeeec
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQW----KQEEAPIRVPV 181 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~----~~~~~~~~~~~ 181 (631)
...+|+|||||+|||+||..|++. |++|+|+||++.+||.+..........+ .+.+.. ......+....
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~------G~~v~vfE~~~~vGG~W~~~~~~~~d~~-~~~~~~~~~~s~~Y~~L~tn~ 81 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRRE------GHTVVVFEREKQVGGLWVYTPKSESDPL-SLDPTRSIVHSSVYESLRTNL 81 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhc------CCeEEEEecCCCCcceeecCCCcCCCcc-ccCCCCcccchhhhhhhhccC
Confidence 357999999999999999999999 9999999999999986543211110000 000000 00000000011
Q ss_pred cCcceEeeccCCcccCCCCCC-----CCCcEEEeHHHHHHHHHHHHHhcCcE--EecCceEEEEEEcCCCcEEEEEeCCC
Q 006778 182 SSDKFWFLTKDRAFSLPSPFS-----NRGNYVISLSQLVRWLGGKAEELGVE--IYPGFAASEILYDADNKVIGIGTNDM 254 (631)
Q Consensus 182 ~~~~~~~l~~~~~~~~p~~~~-----~~~~~~v~~~~l~~~L~~~a~~~Gv~--i~~g~~v~~i~~~~~g~v~gV~~~d~ 254 (631)
+.+.+.|. ++|.... ........+.++.++|.+.++..|++ |+++++|++|...+ + .+.|++.+
T Consensus 82 p~~~m~f~------dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~-~w~V~~~~- 152 (461)
T PLN02172 82 PRECMGYR------DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-G-KWRVQSKN- 152 (461)
T ss_pred CHhhccCC------CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-C-eEEEEEEc-
Confidence 11111111 1111100 01122356788999999999999988 99999999998765 3 34566543
Q ss_pred ccccCCCccccccCceEEEcCEEEEecCCCC
Q 006778 255 GIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 255 g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
.++. ..+..+|.||+|+|..+
T Consensus 153 ---~~~~-------~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 153 ---SGGF-------SKDEIFDAVVVCNGHYT 173 (461)
T ss_pred ---CCCc-------eEEEEcCEEEEeccCCC
Confidence 1111 13568999999999764
No 128
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.11 E-value=2.4e-08 Score=116.92 Aligned_cols=41 Identities=41% Similarity=0.553 Sum_probs=37.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~ 153 (631)
.++|+|||||||||+||+.|++. |++|+|+|+.+.+|+...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~------G~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARA------GHPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC------CCeEEEEecccccCceee
Confidence 57999999999999999999999 999999999988887653
No 129
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.11 E-value=1e-09 Score=123.95 Aligned_cols=96 Identities=22% Similarity=0.269 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcC-EEEEecCCCCchhHH
Q 006778 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEK 290 (631)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~-~vV~A~G~~s~~~~~ 290 (631)
..+.+.|.+.+++.|++|++++.|++++.++ ++|++|.+.+ .++ ...+.++ .||+|+|.++.....
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~-g~V~GV~~~~----~~~--------~~~i~a~k~VVlAtGg~~~n~~~ 280 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG-GRVVGARVID----AGG--------ERRITARRGVVLACGGFSHDLAR 280 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEEc----CCc--------eEEEEeCCEEEEcCCCccchHHH
Confidence 4577778888999999999999999998875 7888887754 111 1357885 899999999975554
Q ss_pred HHHHcCCCc-----ccccCCcceeeEEEEEEeecC
Q 006778 291 LIKNFKLRE-----KSHAQHQTYALGIKEVWEIDE 320 (631)
Q Consensus 291 l~~~~g~~~-----~~~~~~~~~~~g~~~~~~~~~ 320 (631)
+.+.+.... .....+...|.|+++...+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~~Ga 315 (574)
T PRK12842 281 IARAYPHLARGGEHLSPVPAGNTGDGIRLAEAVGG 315 (574)
T ss_pred HHHhcccCcCCcccccCCCCCCCcHHHHHHHHhCC
Confidence 444332210 011223455777766555544
No 130
>PTZ00058 glutathione reductase; Provisional
Probab=99.11 E-value=1.1e-10 Score=130.25 Aligned_cols=53 Identities=26% Similarity=0.503 Sum_probs=49.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHH
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ 165 (631)
++||||||||||||++||+.|++. |.+|+||||. .+|+.|.+-+|++.+.|.+
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~------G~~ValIEk~-~~GGtCln~GCiPsK~l~~ 99 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARN------KAKVALVEKD-YLGGTCVNVGCVPKKIMFN 99 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc------CCeEEEEecc-cccccccccCCCCCchhhh
Confidence 579999999999999999999999 9999999996 6899999999999988754
No 131
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.10 E-value=4.9e-10 Score=126.19 Aligned_cols=189 Identities=17% Similarity=0.221 Sum_probs=106.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-cccccC-----hHhHHHHhhhhhhcCCCe---
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE-----PRALNELLPQWKQEEAPI--- 177 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g~~i~-----~~~l~~l~~~~~~~~~~~--- 177 (631)
++||||||||+|||+||+.+++. ++|++|+|+||....++++. +++.+. .......+.+......-.
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~----g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~ 78 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEA----NPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQ 78 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHh----CCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcH
Confidence 58999999999999999999986 23689999999987666542 222211 111122222211111000
Q ss_pred ---e--eeccCcceEeeccCCcccCCCC------CCCCC------cEEE---eHHHHHHHHHHHHHhc-CcEEecCceEE
Q 006778 178 ---R--VPVSSDKFWFLTKDRAFSLPSP------FSNRG------NYVI---SLSQLVRWLGGKAEEL-GVEIYPGFAAS 236 (631)
Q Consensus 178 ---~--~~~~~~~~~~l~~~~~~~~p~~------~~~~~------~~~v---~~~~l~~~L~~~a~~~-Gv~i~~g~~v~ 236 (631)
. .....+.+.++. ..++.+... ....+ .+.. ....+.+.|.+++.+. +|+++.++.++
T Consensus 79 ~lv~~l~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~ 157 (580)
T TIGR01176 79 DVVEYFVAEAPKEMVQLE-HWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVT 157 (580)
T ss_pred HHHHHHHHHhHHHHHHHH-HcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEE
Confidence 0 000111111111 011111000 00000 1111 2356888898888774 79999999999
Q ss_pred EEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEE
Q 006778 237 EILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVW 316 (631)
Q Consensus 237 ~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~ 316 (631)
+++.++ ++|.||..-+ .++|+. ..+.|+.||+|||+.+.+- ... ...+...|.|+.+.+
T Consensus 158 ~Li~~~-g~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~~~~~-------~~~---t~~~~~tGdG~~mA~ 216 (580)
T TIGR01176 158 DLLVDD-GRVCGLVAIE---MAEGRL-------VTILADAVVLATGGAGRVY-------PFN---TNGGIVTGDGMAMAF 216 (580)
T ss_pred EEEeeC-CEEEEEEEEE---cCCCcE-------EEEecCEEEEcCCCCcccc-------cCC---CCCCCcCcHHHHHHH
Confidence 999864 7888887533 123332 5799999999999998642 211 223345566666555
Q ss_pred eecCC
Q 006778 317 EIDEG 321 (631)
Q Consensus 317 ~~~~~ 321 (631)
+....
T Consensus 217 ~aGA~ 221 (580)
T TIGR01176 217 RHGVP 221 (580)
T ss_pred HcCCC
Confidence 55443
No 132
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.10 E-value=8e-09 Score=102.94 Aligned_cols=208 Identities=19% Similarity=0.212 Sum_probs=113.1
Q ss_pred cCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEEEEeCCCe
Q 006778 274 GRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQ 353 (631)
Q Consensus 274 a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~~~~G~~~~~~~~~~~ 353 (631)
|+++|+|||+.|..|+++. + .......+-+|+.. .+.+-.....|.++ ++ .. +...+|+.+.+.
T Consensus 2 A~LtivaDG~~S~fRk~l~-----~--~~~~v~S~fvGl~l-~~~~lp~~~~ghvi--l~----~~--~pil~YqI~~~e 65 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELS-----D--NKPQVRSYFVGLIL-KDAPLPKPNHGHVI--LG----KP--GPILLYQISSNE 65 (276)
T ss_pred CCEEEEecCCchHHHHhhc-----C--CCCceeeeEEEEEE-cCCCCCCCCceEEE--Ec----CC--CcEEEEEcCCCc
Confidence 7899999999999999863 1 12334455556542 11111111223222 22 11 337899998888
Q ss_pred EEEEEEEcCCCCCCCCCcHHHHHHhhc--Ccc--------hhccccCCceeeecceeeccCCcccCCcccCCCEEEEccC
Q 006778 354 IALGLVVALNYHNPFLNPYEEFQKFKH--HPA--------IKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCA 423 (631)
Q Consensus 354 ~~ig~~~~~d~~~~~~~~~~~~~~~~~--~p~--------i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~LiGDA 423 (631)
+++-+-+..+ .-|..+.-+..+.++. .|. +.+.++.++ .|.+|..-+.+. ....+|++++|||
T Consensus 66 tR~Lvdvp~~-k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~r-----irsMPn~~lp~~-~~~~~G~vllGDA 138 (276)
T PF08491_consen 66 TRVLVDVPGP-KLPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGR-----IRSMPNSFLPAS-PNWKPGVVLLGDA 138 (276)
T ss_pred eEEEEEeCCC-ccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCC-----cceecccccCCC-CCCCCCEEEEehh
Confidence 8887666544 2233222222222221 122 222333332 233444333222 3344899999999
Q ss_pred CccCCCCCCcchHHHHHHHHHHHHHHhcc--cCCC----chHHHHHHHHHHhHHHHHHHHHhccchhhh-hcchHHHHHH
Q 006778 424 AGFLNVPKIKGTHTAMKSGMLAAEAGFGV--LHED----SNMEIYWDTLQKSWVWQELQRARNYRPAFE-YGLLPGLAIC 496 (631)
Q Consensus 424 A~~~~P~~g~G~~~Al~sa~~aA~~l~~~--l~~~----~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~-~g~~~~~~~~ 496 (631)
+++.||.+|+||+.|+.|+.++++.|... +.+. ++++.|...|+.. -.-.--.+.-+...|. .......+..
T Consensus 139 ~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~-~s~iNiLA~aLY~lF~a~~~~l~~Lr~ 217 (276)
T PF08491_consen 139 ANMRHPLTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPL-SSVINILAQALYSLFAADDDYLKALRQ 217 (276)
T ss_pred hcCcCCccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999876 3321 3455555544432 1111111111223332 1223335666
Q ss_pred HHHHHHhcC
Q 006778 497 GLEHYILRG 505 (631)
Q Consensus 497 ~~~~~~~~~ 505 (631)
+...++..|
T Consensus 218 gcf~Yf~~G 226 (276)
T PF08491_consen 218 GCFKYFQLG 226 (276)
T ss_pred HHHHHHHcC
Confidence 666666554
No 133
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.10 E-value=4.6e-10 Score=124.15 Aligned_cols=54 Identities=41% Similarity=0.666 Sum_probs=49.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHH
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l 166 (631)
..|||+||||||||+++|+.|+++ |++|+|+|+. .+|+.+.+-+|++.+.+...
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~------G~~v~lie~~-~~GG~c~~~gciPsk~l~~~ 56 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQL------GLKTALVEKG-KLGGTCLHKGCIPSKALLHS 56 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCeEEEEEcc-CCCcceEcCCcCchHHHHHH
Confidence 469999999999999999999999 9999999996 68999999999999887543
No 134
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.10 E-value=4.6e-10 Score=123.66 Aligned_cols=156 Identities=23% Similarity=0.269 Sum_probs=90.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccC-----hHhHHHHhhhhhhcC----CCe-
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFE-----PRALNELLPQWKQEE----API- 177 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~-----~~~l~~l~~~~~~~~----~~~- 177 (631)
+||||||||+|||+||+.|++. |++|+||||.+..+......+.+. .......+.++.... .+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~------G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~ 75 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK------GFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEV 75 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHH
Confidence 6999999999999999999998 999999999864333222222221 111111111111100 000
Q ss_pred -ee--eccCcceEeeccCCcccCCCC--CCC--C-CcEE---EeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcE
Q 006778 178 -RV--PVSSDKFWFLTKDRAFSLPSP--FSN--R-GNYV---ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKV 246 (631)
Q Consensus 178 -~~--~~~~~~~~~l~~~~~~~~p~~--~~~--~-~~~~---v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v 246 (631)
.. ....+.+.|+.+ .++.+... ... . ..+. .....+.+.|.+.+++.|++++.+ .++++..+ ++++
T Consensus 76 v~~~~~~~~~~i~~L~~-~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~-~g~v 152 (466)
T PRK08401 76 VWNVISKSSEAYDFLTS-LGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIK-NGKA 152 (466)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEee-CCEE
Confidence 00 000111112211 11111100 000 0 0001 123568889999999999999876 78888765 4778
Q ss_pred EEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchh
Q 006778 247 IGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (631)
Q Consensus 247 ~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~ 288 (631)
++|.+. +..+.||.||+|||+++.+.
T Consensus 153 ~Gv~~~----------------g~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 153 YGVFLD----------------GELLKFDATVIATGGFSGLF 178 (466)
T ss_pred EEEEEC----------------CEEEEeCeEEECCCcCcCCC
Confidence 788763 46799999999999999753
No 135
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.10 E-value=7.6e-10 Score=125.01 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEc-CEEEEecCCCCchhH
Q 006778 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLSE 289 (631)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a-~~vV~A~G~~s~~~~ 289 (631)
...+...|.+.+++.|++|+.++.+++++.+ +++|++|.+.+ +|+ ..++.| +.||+|+|.++.. +
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~-------~~~i~A~~~VVlAtGg~~~n-~ 285 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQ-----GGV-------RRRIRARGGVVLATGGFNRH-P 285 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEec-----CCe-------EEEEEccceEEECCCCcccC-H
Confidence 3457788999999999999999999999876 47888987753 222 146786 7899999999985 4
Q ss_pred HHHHHcCCCcc---cccCCcceeeEEEEEEeecC
Q 006778 290 KLIKNFKLREK---SHAQHQTYALGIKEVWEIDE 320 (631)
Q Consensus 290 ~l~~~~g~~~~---~~~~~~~~~~g~~~~~~~~~ 320 (631)
+|.+++..... ....+...|.|+++..++..
T Consensus 286 em~~~~~p~~~~~~~~~~~~~tGdGi~ma~~~Ga 319 (578)
T PRK12843 286 QLRRELLPAAVARYSPGAPGHTGAAIDLALDAGA 319 (578)
T ss_pred HHHHHhCCCCcccccCCCCCCCcHHHHHHHHhCC
Confidence 55565533210 12234556777776655554
No 136
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.10 E-value=4.7e-10 Score=123.14 Aligned_cols=140 Identities=19% Similarity=0.309 Sum_probs=85.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
+|||+||||||||++||+.|++. |++|+|+||. .+|+.+.+-+|++.+.+............. ..+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~------G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~-------~~~ 67 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH------GAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDA-------ADY 67 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC------CCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHH-------hhc
Confidence 59999999999999999999999 9999999996 589999999999988764432221111000 000
Q ss_pred Eeecc-CCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccc
Q 006778 187 WFLTK-DRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (631)
Q Consensus 187 ~~l~~-~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (631)
.+... ...++++........ -...+.+.+...+++.||+++.++.+ ..+++. |.+.
T Consensus 68 g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gv~~~~g~~~----~~~~~~---v~v~------------- 124 (450)
T TIGR01421 68 GFYQNLENTFNWPELKEKRDA---YVDRLNGIYQKNLEKNKVDVIFGHAR----FTKDGT---VEVN------------- 124 (450)
T ss_pred CcccCCcCccCHHHHHHHHHH---HHHHHHHHHHHHHHhCCCEEEEEEEE----EccCCE---EEEC-------------
Confidence 00000 000111100000000 01223444566667789999998764 223333 3332
Q ss_pred ccCceEEEcCEEEEecCCCCc
Q 006778 266 FQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 266 f~~g~~i~a~~vV~A~G~~s~ 286 (631)
|.++.+|.||+|+|+++.
T Consensus 125 ---~~~~~~d~vIiAtGs~p~ 142 (450)
T TIGR01421 125 ---GRDYTAPHILIATGGKPS 142 (450)
T ss_pred ---CEEEEeCEEEEecCCCCC
Confidence 467999999999998764
No 137
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.09 E-value=1.6e-09 Score=122.53 Aligned_cols=165 Identities=22% Similarity=0.324 Sum_probs=93.2
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCC---CeEEEEeeCCCCCCccc-ccccc----Ch---HhHHHHhhhhhhc
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVD---LSVCVVEKGAEVGAHII-SGNVF----EP---RALNELLPQWKQE 173 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G---~~V~vlEk~~~~g~~~~-~g~~i----~~---~~l~~l~~~~~~~ 173 (631)
..++||||||+|.|||+||+.+++. | ++|+||||....++++. +++.+ .+ ......+.+....
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~------G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~ 76 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAER------SGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKG 76 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHh------CCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHh
Confidence 4578999999999999999999998 8 89999999987665442 22211 11 1111111111000
Q ss_pred C----CCe--ee--eccCcceEeeccCCcccCCC---------CCCCC----CcEEE--eHHHHHHHHHHHHHh-cCcEE
Q 006778 174 E----API--RV--PVSSDKFWFLTKDRAFSLPS---------PFSNR----GNYVI--SLSQLVRWLGGKAEE-LGVEI 229 (631)
Q Consensus 174 ~----~~~--~~--~~~~~~~~~l~~~~~~~~p~---------~~~~~----~~~~v--~~~~l~~~L~~~a~~-~Gv~i 229 (631)
. .+. .. ....+.+.|+.. .++.+.. ....+ ..+.. ....+.+.|.+++.+ .||++
T Consensus 77 g~~~~d~~lv~~~~~~s~~~i~~L~~-~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i 155 (577)
T PRK06069 77 SDFLADQDAVEVFVREAPEEIRFLDH-WGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHF 155 (577)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHHHH-cCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEE
Confidence 0 000 00 000011111110 1111100 00000 00101 124577888888876 58999
Q ss_pred ecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch
Q 006778 230 YPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 230 ~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
+.++.+++++.++ ++|.||...+. .+|+. ..+.|+.||+|||+.+.+
T Consensus 156 ~~~~~v~~Li~~~-g~v~Gv~~~~~---~~g~~-------~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 156 YDEHFVTSLIVEN-GVFKGVTAIDL---KRGEF-------KVFQAKAGIIATGGAGRL 202 (577)
T ss_pred EECCEEEEEEEEC-CEEEEEEEEEc---CCCeE-------EEEECCcEEEcCchhccc
Confidence 9999999998764 77888765320 12321 468999999999998753
No 138
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.09 E-value=2.4e-10 Score=113.19 Aligned_cols=192 Identities=24% Similarity=0.299 Sum_probs=118.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc------cccccChH---------------------
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII------SGNVFEPR--------------------- 161 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~------~g~~i~~~--------------------- 161 (631)
-|||||+|.|||+|+..+-.. |-.|+++||...+|+... +|++.+..
T Consensus 11 pvvVIGgGLAGLsasn~iin~------gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~sak 84 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK------GGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAK 84 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc------CCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcc
Confidence 599999999999999999987 667999999999988653 23322211
Q ss_pred --hHHHHhhhhhhcCCCeeeeccCcceEeeccCCcccC-----------CCCCCCCCcEEEeHHHHHHHHHHHHH----h
Q 006778 162 --ALNELLPQWKQEEAPIRVPVSSDKFWFLTKDRAFSL-----------PSPFSNRGNYVISLSQLVRWLGGKAE----E 224 (631)
Q Consensus 162 --~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------p~~~~~~~~~~v~~~~l~~~L~~~a~----~ 224 (631)
...+|+..+. .-+...+.|+.....+++ |...+. +.-....-.+...|.++.+ +
T Consensus 85 sk~~~eLm~~La--------~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~-s~plppgfei~~~L~~~l~k~as~ 155 (477)
T KOG2404|consen 85 SKGVPELMEKLA--------ANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRS-SGPLPPGFEIVKALSTRLKKKASE 155 (477)
T ss_pred cCCcHHHHHHHH--------hcCHHHHHHHhhhcccchHHHHHhcCCCCCccccc-CCCCCCchHHHHHHHHHHHHhhhc
Confidence 0111111111 111222334433222221 111111 0111122344555554443 3
Q ss_pred c--CcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCc---
Q 006778 225 L--GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLRE--- 299 (631)
Q Consensus 225 ~--Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~--- 299 (631)
. -++|..+++|++|.. ++|.|.+|..-| ..|+. ..+.++.||+|+|.++.--+.|.+.|+...
T Consensus 156 ~pe~~ki~~nskvv~il~-n~gkVsgVeymd----~sgek-------~~~~~~~VVlatGGf~ysd~~lLKey~pel~~l 223 (477)
T KOG2404|consen 156 NPELVKILLNSKVVDILR-NNGKVSGVEYMD----ASGEK-------SKIIGDAVVLATGGFGYSDKELLKEYGPELFGL 223 (477)
T ss_pred ChHHHhhhhcceeeeeec-CCCeEEEEEEEc----CCCCc-------cceecCceEEecCCcCcChHHHHHHhChhhccC
Confidence 2 278999999999984 458899999876 67764 578899999999999976688888776542
Q ss_pred ccccCCcceeeEEEEEEeecCCCCCCCc
Q 006778 300 KSHAQHQTYALGIKEVWEIDEGKHNPGE 327 (631)
Q Consensus 300 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~ 327 (631)
+...-++..|.|-+++..+.....+.+.
T Consensus 224 pTTNG~~~tGDgqk~l~klga~liDmd~ 251 (477)
T KOG2404|consen 224 PTTNGAQTTGDGQKMLMKLGASLIDMDQ 251 (477)
T ss_pred CcCCCCcccCcHHHHHHHhCccccccce
Confidence 1344566677777777666665555443
No 139
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.09 E-value=1.8e-09 Score=117.76 Aligned_cols=161 Identities=24% Similarity=0.345 Sum_probs=100.7
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCe-EEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccC
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~-V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~ 183 (631)
...+||+|||||++||++|++|.++ |.. ++|+||+..+|+... ..-++-
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~------g~~~~~i~Ek~~~~Gg~W~------------------~~ry~~------ 55 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQA------GVPDFVIFEKRDDVGGTWR------------------YNRYPG------ 55 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHc------CCCcEEEEEccCCcCCcch------------------hccCCc------
Confidence 3578999999999999999999999 888 999999999887421 111110
Q ss_pred cceEeeccCCcccCCCC-CCCCCcEEEeHHHHHHHHHHHHHhcCc--EEecCceEEEEEEcCCCcEEEEEeCCCccccCC
Q 006778 184 DKFWFLTKDRAFSLPSP-FSNRGNYVISLSQLVRWLGGKAEELGV--EIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (631)
Q Consensus 184 ~~~~~l~~~~~~~~p~~-~~~~~~~~v~~~~l~~~L~~~a~~~Gv--~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G 260 (631)
+..-.......+|.. +..... .-....+..++.+.+++.+. +|.+++.|..+..++++..+.|++.+ |
T Consensus 56 --l~~~~p~~~~~~~~~p~~~~~~-~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~------~ 126 (443)
T COG2072 56 --LRLDSPKWLLGFPFLPFRWDEA-FAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSD------G 126 (443)
T ss_pred --eEECCchheeccCCCccCCccc-CCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcC------C
Confidence 000000001111100 000001 11223356667777777763 47788888888888877788898876 1
Q ss_pred CccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCC
Q 006778 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLD 337 (631)
Q Consensus 261 ~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~ 337 (631)
.. +. +.||.||+|||..+. . .. ..++....+.|.++|...|+-.
T Consensus 127 ~~------~~-~~a~~vV~ATG~~~~--P-------------~i-----------P~~~G~~~f~g~~~HS~~~~~~ 170 (443)
T COG2072 127 GT------GE-LTADFVVVATGHLSE--P-------------YI-----------PDFAGLDEFKGRILHSADWPNP 170 (443)
T ss_pred Ce------ee-EecCEEEEeecCCCC--C-------------CC-----------CCCCCccCCCceEEchhcCCCc
Confidence 10 12 779999999997542 1 11 1233444567888998888644
No 140
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.09 E-value=1.2e-09 Score=123.58 Aligned_cols=98 Identities=23% Similarity=0.206 Sum_probs=65.4
Q ss_pred eHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEc-CEEEEecCCCCchh
Q 006778 210 SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLS 288 (631)
Q Consensus 210 ~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a-~~vV~A~G~~s~~~ 288 (631)
....|.+.|.+.+++.|++|+++++|++++.++ ++|++|.+.+ ++. ..+++| |.||+|+|.++...
T Consensus 215 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~-g~v~GV~~~~-----~~~-------~~~i~a~k~VVlAtGg~~~n~ 281 (581)
T PRK06134 215 NGNALVARLLKSAEDLGVRIWESAPARELLRED-GRVAGAVVET-----PGG-------LQEIRARKGVVLAAGGFPHDP 281 (581)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEEE-----CCc-------EEEEEeCCEEEEcCCCcccCH
Confidence 345677889999999999999999999998764 7888887643 111 146899 99999999999754
Q ss_pred HHHHHHcCCCcc-----cccCCcceeeEEEEEEeecC
Q 006778 289 EKLIKNFKLREK-----SHAQHQTYALGIKEVWEIDE 320 (631)
Q Consensus 289 ~~l~~~~g~~~~-----~~~~~~~~~~g~~~~~~~~~ 320 (631)
..+.+.+..... ....+...|.|+++...+..
T Consensus 282 ~~~~~~~p~~~~~~~~~~~~~~~~tGDGi~ma~~~GA 318 (581)
T PRK06134 282 ARRAALFPRAPTGHEHLSLPPPGNSGDGLRLGESAGG 318 (581)
T ss_pred HHHHHhcCCCCCCCCccccCCCCCCChHHHHHHHhCC
Confidence 443333322100 11234455666665544444
No 141
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.09 E-value=1.9e-08 Score=109.30 Aligned_cols=171 Identities=25% Similarity=0.371 Sum_probs=106.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc-ccccccCh--------------HhHHH-----
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFEP--------------RALNE----- 165 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~-~~g~~i~~--------------~~l~~----- 165 (631)
+++||+|||||+.|+-.|..++.+ |++|+++|+++...+++ .+...+.. .++.|
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~R------Gl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~ 84 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGR------GLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLL 84 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhC------CCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHH
Confidence 679999999999999999999999 99999999998654433 22222211 11111
Q ss_pred -HhhhhhhcCCCeeeeccC--cceE-----------------------eeccCCcccCCCCCCC---CC-----cEEEeH
Q 006778 166 -LLPQWKQEEAPIRVPVSS--DKFW-----------------------FLTKDRAFSLPSPFSN---RG-----NYVISL 211 (631)
Q Consensus 166 -l~~~~~~~~~~~~~~~~~--~~~~-----------------------~l~~~~~~~~p~~~~~---~~-----~~~v~~ 211 (631)
..|..-. ..+...+... ...+ .+.........+.... .| .+.++-
T Consensus 85 ~~APH~v~-p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vdd 163 (532)
T COG0578 85 RIAPHLVE-PLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDD 163 (532)
T ss_pred HhCccccc-cCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceech
Confidence 1111000 0001111111 0000 0000001111111111 11 345677
Q ss_pred HHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHH
Q 006778 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKL 291 (631)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l 291 (631)
.+|.-.....|.+.|.+++..++|+++..++ + |++|.+.| ..+|+. .+++|+.||.|+|.|+ .++
T Consensus 164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re~-~-v~gV~~~D---~~tg~~-------~~ira~~VVNAaGpW~---d~i 228 (532)
T COG0578 164 ARLVAANARDAAEHGAEILTYTRVESLRREG-G-VWGVEVED---RETGET-------YEIRARAVVNAAGPWV---DEI 228 (532)
T ss_pred HHHHHHHHHHHHhcccchhhcceeeeeeecC-C-EEEEEEEe---cCCCcE-------EEEEcCEEEECCCccH---HHH
Confidence 8888888889999999999999999999887 4 88999987 234543 6899999999999996 556
Q ss_pred HHHcCCC
Q 006778 292 IKNFKLR 298 (631)
Q Consensus 292 ~~~~g~~ 298 (631)
.+..+..
T Consensus 229 ~~~~~~~ 235 (532)
T COG0578 229 LEMAGLE 235 (532)
T ss_pred HHhhccc
Confidence 5555544
No 142
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.09 E-value=6e-10 Score=125.19 Aligned_cols=96 Identities=21% Similarity=0.315 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcC-EEEEecCCCCchhHH
Q 006778 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEK 290 (631)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~-~vV~A~G~~s~~~~~ 290 (631)
..+...|.+.+++.|++|++++.|++++.++ ++|++|.... +|+ ..++.|+ .||+|+|..+.. ++
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~-----~g~-------~~~i~A~~aVIlAtGG~~~N-~e 273 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED-GRVVGVVVVR-----DGR-------EVLIRARRGVLLASGGFGHN-AE 273 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEEEE-----CCe-------EEEEEecceEEEecCCccCC-HH
Confidence 4567788889999999999999999999874 7898987642 232 2568895 799999999984 55
Q ss_pred HHHHcCCCcc----cccCCcceeeEEEEEEeecCC
Q 006778 291 LIKNFKLREK----SHAQHQTYALGIKEVWEIDEG 321 (631)
Q Consensus 291 l~~~~g~~~~----~~~~~~~~~~g~~~~~~~~~~ 321 (631)
|.+.|..... ....+...|.|+++..++...
T Consensus 274 m~~~~~p~~~~~~~~~~~~~~tGDGi~ma~~~GA~ 308 (557)
T PRK12844 274 MRKRYQPQPNSGDWTNANPGDTGEVIEAAMRLGAA 308 (557)
T ss_pred HHHHhcCCcccCcccCCCCCCCHHHHHHHHHcCCC
Confidence 5555543210 112344567777766555544
No 143
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.09 E-value=2.5e-09 Score=121.72 Aligned_cols=165 Identities=25% Similarity=0.301 Sum_probs=93.5
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc-ccccc----cC----hHhHHHHhhhhhhcC-
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNV----FE----PRALNELLPQWKQEE- 174 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~-~~g~~----i~----~~~l~~l~~~~~~~~- 174 (631)
.+++||||||+|.|||+||+.+++. |++|+||||....++++ .+++. +. .......+.+.....
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~------G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~ 79 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARER------GLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGK 79 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHC------CCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhc
Confidence 3579999999999999999999998 99999999987654432 11111 11 111111111111000
Q ss_pred ---CC--eee--eccCcceEeeccCCcccCCCC------CCCCCc----EEE-----eHHHHHHHHHHHHHhc-------
Q 006778 175 ---AP--IRV--PVSSDKFWFLTKDRAFSLPSP------FSNRGN----YVI-----SLSQLVRWLGGKAEEL------- 225 (631)
Q Consensus 175 ---~~--~~~--~~~~~~~~~l~~~~~~~~p~~------~~~~~~----~~v-----~~~~l~~~L~~~a~~~------- 225 (631)
.+ ... ....+.++++. ..++.+... ....++ .+. ....+...|.+.+++.
T Consensus 80 ~l~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~ 158 (626)
T PRK07803 80 FLNNWRMAELHAKEAPDRVWELE-TYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAE 158 (626)
T ss_pred cCCcHHHHHHHHHHhHHHHHHHH-HCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhcccccc
Confidence 00 000 00111112221 111111000 000000 011 2356778888888776
Q ss_pred -C-----cEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch
Q 006778 226 -G-----VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 226 -G-----v~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
| |+|+.++.|++++.++ ++|.||...+ ..+|+. ..+.|+.||+|+|+.+.+
T Consensus 159 ~G~~~~~v~i~~~~~v~~L~~~~-g~v~Gv~~~~---~~~g~~-------~~i~Ak~VVlATGG~~~~ 215 (626)
T PRK07803 159 LGDYEARIKVFAECTITELLKDG-GRIAGAFGYW---RESGRF-------VLFEAPAVVLATGGIGKS 215 (626)
T ss_pred ccCCcCceEEEeCCEEEEEEEEC-CEEEEEEEEE---CCCCeE-------EEEEcCeEEECCCcccCC
Confidence 7 9999999999998764 7888876533 123321 578999999999997754
No 144
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.09 E-value=7.4e-10 Score=125.56 Aligned_cols=166 Identities=15% Similarity=0.215 Sum_probs=93.2
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcccccc--ccC----h-HhHHHHhhhhhhcCC--
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGN--VFE----P-RALNELLPQWKQEEA-- 175 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~--~i~----~-~~l~~l~~~~~~~~~-- 175 (631)
..++||||||||.|||+||+.+++. .+|++|+||||....++...+++ .+. . ....+.+.+......
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~----~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~ 84 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEW----APDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGI 84 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHh----CCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCC
Confidence 4578999999999999999999884 23899999999876444332222 111 0 011111111111100
Q ss_pred --Ce--eeec--cCcceEeeccCCcccCCCC----CCCCC--cEEEeHHHHHHHHHHHHHhcC-cEEecCceEEEEEEcC
Q 006778 176 --PI--RVPV--SSDKFWFLTKDRAFSLPSP----FSNRG--NYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDA 242 (631)
Q Consensus 176 --~~--~~~~--~~~~~~~l~~~~~~~~p~~----~~~~~--~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~ 242 (631)
+. ...+ ..+.+.++.. .++.+... ....+ ...+....+.+.|.+.+++.| |+|+.++.|++++.++
T Consensus 85 ~d~~lv~~~~~~s~~~i~~L~~-~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~ 163 (608)
T PRK06854 85 VREDLVYDIARHVDSVVHLFEE-WGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDD 163 (608)
T ss_pred CCHHHHHHHHHhHHHHHHHHHH-cCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC
Confidence 00 0000 0011111110 11111000 00000 011344567888888888875 9999999999998765
Q ss_pred CCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCc
Q 006778 243 DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 243 ~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
++|+||...+ ..+|+ ...+.||.||+|+|+++.
T Consensus 164 -g~v~Gv~~~~---~~~g~-------~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 164 -NRIAGAVGFS---VRENK-------FYVFKAKAVIVATGGAAG 196 (608)
T ss_pred -CEEEEEEEEE---ccCCc-------EEEEECCEEEECCCchhh
Confidence 6787875422 01232 157999999999999874
No 145
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.08 E-value=5e-08 Score=108.55 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhH
Q 006778 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE 289 (631)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~ 289 (631)
..+.+.|.+.+++.|++|+.+++|++|..++ +++.+|++.+ |.++.||.||.|.|.+..+.+
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~---------------g~~~~ad~vV~a~~~~~~~~~ 290 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILEN-GKAVGVKLAD---------------GEKIYAKRIVSNATRWDTFGK 290 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC-CcEEEEEeCC---------------CCEEEcCEEEECCChHHHHHH
Confidence 6788889999999999999999999998875 6788898876 678999999999998766544
No 146
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.08 E-value=8.3e-10 Score=124.95 Aligned_cols=90 Identities=20% Similarity=0.173 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHh----cCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch
Q 006778 212 SQLVRWLGGKAEE----LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 212 ~~l~~~L~~~a~~----~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
..+...|.+.+++ .||+|++++.+++++.+++|+|+||.+.+ ..+|+. ..+.||.||+|||+.+.+
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~---~~~g~~-------~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARN---LVTGEI-------ETHSADAVILATGGYGNV 198 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEE---CCCCcE-------EEEEcCEEEECCCCCcCc
Confidence 4555556555543 37999999999999987667899998754 123332 578999999999998864
Q ss_pred hHHHHHHcCCCcccccCCcceeeEEEEEEeecCC
Q 006778 288 SEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEG 321 (631)
Q Consensus 288 ~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 321 (631)
.. .. ...+...|.|+.+.+++...
T Consensus 199 ~~-------~~---t~~~~~tGdGi~mA~~aGa~ 222 (603)
T TIGR01811 199 FG-------KS---TNAMNSNASAAWRAYEQGAY 222 (603)
T ss_pred CC-------cc---CCCCCcCcHHHHHHHHcCCC
Confidence 21 11 22334556666555444443
No 147
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.08 E-value=9.3e-10 Score=121.38 Aligned_cols=54 Identities=41% Similarity=0.641 Sum_probs=49.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHH
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l 166 (631)
+|||+||||||||++||+.|++. |++|+|+|+...+|+.|.+-+|++.+.|...
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~------G~~V~liE~~~~~GG~c~~~gciPsK~l~~~ 56 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL------GLKVACVEGRSTLGGTCLNVGCMPSKALLHA 56 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCceeeeeccCcccccHHHHHH
Confidence 59999999999999999999999 9999999987779999999999999987544
No 148
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.08 E-value=4.2e-09 Score=116.21 Aligned_cols=79 Identities=19% Similarity=0.321 Sum_probs=58.5
Q ss_pred cEEEeHHHHHHHHHHHHHhcC-cEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCC
Q 006778 206 NYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~ 284 (631)
.+.++...+.+.|.+.+++.| ++|+++++|+++..++++.+ .|.+.+. .+|+ +.+++|++||+|+|.+
T Consensus 177 ~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~---~~G~-------~~~i~A~~VVvaAGg~ 245 (494)
T PRK05257 177 GTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDL---KTGE-------KRTVRAKFVFIGAGGG 245 (494)
T ss_pred ceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEc---CCCc-------eEEEEcCEEEECCCcc
Confidence 567899999999999999887 89999999999988665543 3443210 1111 1369999999999999
Q ss_pred CchhHHHHHHcCCC
Q 006778 285 GSLSEKLIKNFKLR 298 (631)
Q Consensus 285 s~~~~~l~~~~g~~ 298 (631)
+ ..+.+..|+.
T Consensus 246 s---~~L~~~~Gi~ 256 (494)
T PRK05257 246 A---LPLLQKSGIP 256 (494)
T ss_pred h---HHHHHHcCCC
Confidence 7 4566666665
No 149
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.07 E-value=9.5e-10 Score=123.19 Aligned_cols=189 Identities=16% Similarity=0.234 Sum_probs=104.1
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc-cccccc----Ch-HhHHHHhhhhhhcC----
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVF----EP-RALNELLPQWKQEE---- 174 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~-~~g~~i----~~-~~l~~l~~~~~~~~---- 174 (631)
..++||||||+|.|||+||+.+++ +.+|+||||....++++ .+++.+ ++ ......+.+.....
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~-------~~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~ 78 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAE-------HRRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLC 78 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHH-------CCCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCC
Confidence 356899999999999999999986 47999999998766643 333222 11 11111111111100
Q ss_pred CC--eeee--ccCcceEeeccCCcccCCC-------------CCCC-CCcEEE-----eHHHHHHHHHHHHHhc-CcEEe
Q 006778 175 AP--IRVP--VSSDKFWFLTKDRAFSLPS-------------PFSN-RGNYVI-----SLSQLVRWLGGKAEEL-GVEIY 230 (631)
Q Consensus 175 ~~--~~~~--~~~~~~~~l~~~~~~~~p~-------------~~~~-~~~~~v-----~~~~l~~~L~~~a~~~-Gv~i~ 230 (631)
.+ +... -..+.+.|+.. .++.+.. .... ....++ ....+...|.+.+.+. ||+|+
T Consensus 79 d~~~v~~~~~~~~~~i~~L~~-~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~ 157 (536)
T PRK09077 79 DEDAVRFIAENAREAVQWLID-QGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVL 157 (536)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 00 0000 00011111110 0111100 0000 001111 2346778888888765 89999
Q ss_pred cCceEEEEEEcC-----CCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCC
Q 006778 231 PGFAASEILYDA-----DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQH 305 (631)
Q Consensus 231 ~g~~v~~i~~~~-----~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~ 305 (631)
.++.+++++.++ +++|+||...+ ..+|+. ..+.|+.||+|+|..+.+.. .. ...+
T Consensus 158 ~~~~v~~Li~~~~~~~~~g~v~Gv~~~~---~~~g~~-------~~i~Ak~VVlATGG~~~~~~-------~~---~~~~ 217 (536)
T PRK09077 158 ERHNAIDLITSDKLGLPGRRVVGAYVLN---RNKERV-------ETIRAKFVVLATGGASKVYL-------YT---TNPD 217 (536)
T ss_pred eeEEeeeeeecccccCCCCEEEEEEEEE---CCCCcE-------EEEecCeEEECCCCCCCCCC-------CC---cCCC
Confidence 999999998754 37888987653 123332 57899999999999986422 11 2233
Q ss_pred cceeeEEEEEEeecCC
Q 006778 306 QTYALGIKEVWEIDEG 321 (631)
Q Consensus 306 ~~~~~g~~~~~~~~~~ 321 (631)
...|.|+.+.++....
T Consensus 218 ~~tGdG~~mA~~aGA~ 233 (536)
T PRK09077 218 IASGDGIAMAWRAGCR 233 (536)
T ss_pred CCCcHHHHHHHHcCCc
Confidence 4556666555544443
No 150
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.07 E-value=3.4e-10 Score=124.91 Aligned_cols=146 Identities=23% Similarity=0.342 Sum_probs=86.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhc-CCCeeeeccCc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQE-EAPIRVPVSSD 184 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~-~~~~~~~~~~~ 184 (631)
..|||+||||||+|+++|+.|++. |++|+|+||.+.+|+.+...++++.+.|.......... ..+.....
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~------G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~--- 74 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL------GKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSY--- 74 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhccc---
Confidence 369999999999999999999999 99999999988899998888899988765432222110 00000000
Q ss_pred ceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccc
Q 006778 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (631)
Q Consensus 185 ~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~ 264 (631)
.....++++..+... .. -...+.+.+.+.+++.|++++.+.. ..+ +. +.+ .|...+ |+
T Consensus 75 -----~~~~~~~~~~l~~~~-~~--~~~~~~~~~~~~~~~~~v~~~~g~~-~~~--~~-~~~-~v~~~~------g~--- 132 (461)
T PRK05249 75 -----RVKLRITFADLLARA-DH--VINKQVEVRRGQYERNRVDLIQGRA-RFV--DP-HTV-EVECPD------GE--- 132 (461)
T ss_pred -----CCcCccCHHHHHHHH-HH--HHHHHHHHHHHHHHHCCCEEEEEEE-EEe--cC-CEE-EEEeCC------Cc---
Confidence 000000000000000 00 0012334455667778999998753 222 22 333 355443 21
Q ss_pred cccCceEEEcCEEEEecCCCCc
Q 006778 265 NFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 265 ~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
..++++|.||+|+|+.+.
T Consensus 133 ----~~~~~~d~lviATGs~p~ 150 (461)
T PRK05249 133 ----VETLTADKIVIATGSRPY 150 (461)
T ss_pred ----eEEEEcCEEEEcCCCCCC
Confidence 147999999999998764
No 151
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.07 E-value=7.3e-10 Score=122.87 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=93.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc-ccccccC----h-HhHHHHhhhhhhcCC----C
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE----P-RALNELLPQWKQEEA----P 176 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~-~~g~~i~----~-~~l~~l~~~~~~~~~----~ 176 (631)
++||||||+|+|||+||+.+++. |. |+||||.+..++++ .+++.+. + ......+.++..... +
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~------G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~ 74 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQ------GR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDR 74 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhC------CC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCH
Confidence 47999999999999999999998 87 99999997655544 2222111 0 111112222111100 0
Q ss_pred e--eee--ccCcceEeeccCCcccCCCC------C----CCCCcEEE-----eHHHHHHHHHHHHHh-cCcEEecCceEE
Q 006778 177 I--RVP--VSSDKFWFLTKDRAFSLPSP------F----SNRGNYVI-----SLSQLVRWLGGKAEE-LGVEIYPGFAAS 236 (631)
Q Consensus 177 ~--~~~--~~~~~~~~l~~~~~~~~p~~------~----~~~~~~~v-----~~~~l~~~L~~~a~~-~Gv~i~~g~~v~ 236 (631)
. ... ...+.+.|+.. .++.+... . ......++ ....+.+.|.+.+++ .||+|++++.|+
T Consensus 75 ~~v~~~~~~~~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~ 153 (488)
T TIGR00551 75 EAVEFVVSDARSAVQWLVD-QGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENAL 153 (488)
T ss_pred HHHHHHHHhHHHHHHHHHH-cCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEee
Confidence 0 000 00011111110 11111100 0 00001111 235788899999987 699999999999
Q ss_pred EEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch
Q 006778 237 EILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 237 ~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
+++.++ +.|.+|.+.+. ++ ...+.|+.||+|||+++.+
T Consensus 154 ~l~~~~-g~v~Gv~~~~~-----~~-------~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 154 DLLIET-GRVVGVWVWNR-----ET-------VETCHADAVVLATGGAGKL 191 (488)
T ss_pred eeeccC-CEEEEEEEEEC-----Cc-------EEEEEcCEEEECCCcccCC
Confidence 998764 67878876541 11 1578999999999999864
No 152
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.07 E-value=2e-09 Score=122.91 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHH
Q 006778 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKL 291 (631)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l 291 (631)
..+...|.+.+++.||+|+.++.+++++.++ |+|.||...+ .++|+. ..+.|+.||+|||+++.+-
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~---~~~G~~-------~~i~AkaVVLATGG~g~~y--- 223 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDG-KRCYGAVVRC---LITGEL-------RAYVAKATLIATGGYGRIY--- 223 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC-CEEEEEEEEE---cCCCcE-------EEEEcCeEEECCCcccCCC---
Confidence 4567778888888999999999999999764 7888887653 123432 5689999999999998642
Q ss_pred HHHcCCCcccccCCcceeeEEEEEEeec
Q 006778 292 IKNFKLREKSHAQHQTYALGIKEVWEID 319 (631)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 319 (631)
... ...+...|.|+.+.++..
T Consensus 224 ----~~t---tn~~~~tGdG~~mA~~aG 244 (657)
T PRK08626 224 ----KVT---TNAVICEGIGAAIALETG 244 (657)
T ss_pred ----CCC---CCCCCcChHHHHHHHHcC
Confidence 222 223445566665555554
No 153
>PRK06370 mercuric reductase; Validated
Probab=99.07 E-value=1e-09 Score=121.03 Aligned_cols=55 Identities=27% Similarity=0.517 Sum_probs=49.3
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHH
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l 166 (631)
+.+||||||||||||++||+.|++. |++|+|+|+. .+|+.+.+.+|++++.|...
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~------G~~v~lie~~-~~GG~c~~~gciPsk~l~~~ 57 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGL------GMKVALIERG-LLGGTCVNTGCVPTKTLIAS 57 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC------CCeEEEEecC-ccCCceeccccCcHHHHHHH
Confidence 3469999999999999999999999 9999999986 58999999999999887544
No 154
>PRK06116 glutathione reductase; Validated
Probab=99.06 E-value=2.3e-10 Score=125.85 Aligned_cols=53 Identities=19% Similarity=0.414 Sum_probs=48.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHH
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ 165 (631)
.+|||+||||||||++||+.|+++ |++|+|+|+. .+|+.+.+-+|++.+.|..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~------G~~V~liE~~-~~GG~c~n~gciP~k~l~~ 55 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMY------GAKVALIEAK-RLGGTCVNVGCVPKKLMWY 55 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCeEEEEecc-chhhhhhccCcchHHHHHH
Confidence 369999999999999999999999 9999999996 6899999999999887643
No 155
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.06 E-value=1.3e-09 Score=120.24 Aligned_cols=54 Identities=41% Similarity=0.690 Sum_probs=48.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHH
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l 166 (631)
.+|||+||||||||++||+.|+++ |++|+|+||.. +|+.+..-+|++.+.+.+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~------G~~V~liE~~~-~GG~c~~~gciP~k~l~~~ 56 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL------GLKVAIVEKEK-LGGTCLNRGCIPSKALLHA 56 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC------CCcEEEEeccc-cccceeecccCCcHHHHHh
Confidence 369999999999999999999999 99999999987 8999988899998876543
No 156
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.06 E-value=9.3e-10 Score=121.58 Aligned_cols=148 Identities=14% Similarity=0.279 Sum_probs=91.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccc---cccChHhHHHHhhhhhhcCCCeeeeccC-
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISG---NVFEPRALNELLPQWKQEEAPIRVPVSS- 183 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g---~~i~~~~l~~l~~~~~~~~~~~~~~~~~- 183 (631)
|||+|||||+||+.+|..+++. |.+|+|+|+.....+.+.+. +.+....+.+-++.+.. ......+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~------G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG---~~~~~~d~~ 71 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM------GAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGG---LMGKAADKA 71 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCEEEEecccccccCCCccccccccccchhhhhhhcccc---hHHHHHHhh
Confidence 6999999999999999999999 99999999975433322111 00111111111111110 00000000
Q ss_pred -cceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCC
Q 006778 184 -DKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (631)
Q Consensus 184 -~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~ 261 (631)
..+..+....+ | .. ......+++..+.++|.+.+++. |++++.+ .|+++..++++.+.+|.+.+
T Consensus 72 ~i~~r~ln~skg---p-AV-~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~-------- 137 (617)
T TIGR00136 72 GLQFRVLNSSKG---P-AV-RATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQD-------- 137 (617)
T ss_pred ceeheecccCCC---C-cc-cccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECC--------
Confidence 01111111000 0 00 01124678889999999999887 6888755 68888776457788999876
Q ss_pred ccccccCceEEEcCEEEEecCCCC
Q 006778 262 KKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 262 ~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
|..+.|+.||+|+|.+.
T Consensus 138 -------G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 138 -------GLKFRAKAVIITTGTFL 154 (617)
T ss_pred -------CCEEECCEEEEccCccc
Confidence 67899999999999995
No 157
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.06 E-value=9.8e-09 Score=115.98 Aligned_cols=41 Identities=37% Similarity=0.686 Sum_probs=36.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~ 153 (631)
..+|+|||+||+||++|..|++. |++|+|+|+.+.+|+...
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeee
Confidence 46899999999999999999999 999999999988876543
No 158
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.05 E-value=4.1e-09 Score=105.67 Aligned_cols=161 Identities=22% Similarity=0.279 Sum_probs=103.1
Q ss_pred cCccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcccc-c--cccCh--------HhHHHHhhhhhh
Q 006778 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS-G--NVFEP--------RALNELLPQWKQ 172 (631)
Q Consensus 104 ~~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~-g--~~i~~--------~~l~~l~~~~~~ 172 (631)
+.+..||+|||||+-|+++|+.|++. |.++++||+.+.+-....+ | -.+.+ +...+.+..|..
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~------g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~ 77 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKR------GDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRN 77 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhc------CCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHh
Confidence 44678999999999999999999999 9999999998743211111 1 01111 222344566665
Q ss_pred cCCCeeeeccCcceEeecc---------------------------CCcccCC------CC---CCCCCcEEEeHHHHHH
Q 006778 173 EEAPIRVPVSSDKFWFLTK---------------------------DRAFSLP------SP---FSNRGNYVISLSQLVR 216 (631)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~---------------------------~~~~~~p------~~---~~~~~~~~v~~~~l~~ 216 (631)
........+......+... ...-.+| .. .-+..+.++...+-.+
T Consensus 78 ~~~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk 157 (399)
T KOG2820|consen 78 LPEESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLK 157 (399)
T ss_pred ChhhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHH
Confidence 4322221111111111100 0000122 11 1122244577778888
Q ss_pred HHHHHHHhcCcEEecCceEEEEEEcC-CCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCC
Q 006778 217 WLGGKAEELGVEIYPGFAASEILYDA-DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 217 ~L~~~a~~~Gv~i~~g~~v~~i~~~~-~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
.|.+.+++.|+.++.|.+|+.+...+ ++.++.|.|.+ |..+.||.+|+++|+|-
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~---------------gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD---------------GSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEecc---------------CCeeecceEEEEecHHH
Confidence 99999999999999999999887543 45667888887 77899999999999984
No 159
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.05 E-value=8.8e-10 Score=123.48 Aligned_cols=162 Identities=20% Similarity=0.210 Sum_probs=92.4
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc-cccccc----C-hHhHHHHhhhhhhcCC---
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVF----E-PRALNELLPQWKQEEA--- 175 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~-~~g~~i----~-~~~l~~l~~~~~~~~~--- 175 (631)
+.++||||||+|.|||+||+.++ . |++|+||||.+..++++ .+++.+ . .......+.++.....
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~------G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~ 79 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-S------HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLC 79 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-c------CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCC
Confidence 35789999999999999999985 4 89999999998766654 222222 1 1111112222111100
Q ss_pred -Ce--eee--ccCcceEeeccCCcccCCC----------CCCCC-CcEEE---eHHHHHHHHHHHHHhc-CcEEecCceE
Q 006778 176 -PI--RVP--VSSDKFWFLTKDRAFSLPS----------PFSNR-GNYVI---SLSQLVRWLGGKAEEL-GVEIYPGFAA 235 (631)
Q Consensus 176 -~~--~~~--~~~~~~~~l~~~~~~~~p~----------~~~~~-~~~~v---~~~~l~~~L~~~a~~~-Gv~i~~g~~v 235 (631)
+. ... -..+.+.|+.. .++.+.. ..+.. ..+.. ....+...|.+.+++. ||+|++++.+
T Consensus 80 d~~lv~~~~~~s~~~i~wL~~-~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v 158 (553)
T PRK07395 80 DPEAVRFLVEQAPEAIASLVE-MGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALA 158 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHh-cCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcCh
Confidence 00 000 00011111110 0111100 00000 01111 1356778888888754 8999999999
Q ss_pred EEEEEcC-CCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCc
Q 006778 236 SEILYDA-DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 236 ~~i~~~~-~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
++++.++ +|+|.||.+.+ +|.. ..+.|+.||+|||+.+.
T Consensus 159 ~~Li~~~~~g~v~Gv~~~~-----~g~~-------~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 159 LSLWLEPETGRCQGISLLY-----QGQI-------TWLRAGAVILATGGGGQ 198 (553)
T ss_pred hhheecCCCCEEEEEEEEE-----CCeE-------EEEEcCEEEEcCCCCcc
Confidence 9998874 47888887642 2321 46899999999999864
No 160
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.6e-09 Score=111.57 Aligned_cols=114 Identities=28% Similarity=0.436 Sum_probs=79.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCe-EEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~-V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (631)
+.|||+|||||||||+||+.+++. +++ ++|+|+. ..|+.... +.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~------~l~~~li~~~~-~~gg~~~~---------------~~------------- 46 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARA------GLKVVLILEGG-EPGGQLTK---------------TT------------- 46 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHc------CCCcEEEEecC-CcCCcccc---------------ce-------------
Confidence 469999999999999999999999 999 5556654 44531100 00
Q ss_pred ceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccc
Q 006778 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (631)
Q Consensus 185 ~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~ 264 (631)
... .+|.. .-.+....|.+.+.++++..|+++.. ..|.++...++ ...|.+.+
T Consensus 47 ---~ve-----nypg~-----~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~--~F~v~t~~----------- 99 (305)
T COG0492 47 ---DVE-----NYPGF-----PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG--PFKVKTDK----------- 99 (305)
T ss_pred ---eec-----CCCCC-----ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc--eEEEEECC-----------
Confidence 000 01100 01145678899999999999999887 66777766543 55688776
Q ss_pred cccCceEEEcCEEEEecCCCCc
Q 006778 265 NFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 265 ~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
|. ++||.||+|+|....
T Consensus 100 ----~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 100 ----GT-YEAKAVIIATGAGAR 116 (305)
T ss_pred ----Ce-EEEeEEEECcCCccc
Confidence 55 999999999998763
No 161
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.05 E-value=5.6e-09 Score=117.52 Aligned_cols=95 Identities=16% Similarity=0.186 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcC-EEEEecCCCCchhHHH
Q 006778 213 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEKL 291 (631)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~-~vV~A~G~~s~~~~~l 291 (631)
.+...|.+.+++.|++|++++++++++.++ ++|++|.... +|+ ...+.|+ .||+|+|..... +.|
T Consensus 209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~-g~v~Gv~~~~-----~g~-------~~~i~A~~~VIlAtGG~~~n-~~m 274 (557)
T PRK07843 209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVED-GRVTGVHAAE-----SGE-------PQLIRARRGVILASGGFEHN-EQM 274 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCEEEEEEEeC-CEEEEEEEEe-----CCc-------EEEEEeceeEEEccCCcCcC-HHH
Confidence 456677788888999999999999998864 7888887642 232 2578896 699999999884 455
Q ss_pred HHHcCCCc----ccccCCcceeeEEEEEEeecCC
Q 006778 292 IKNFKLRE----KSHAQHQTYALGIKEVWEIDEG 321 (631)
Q Consensus 292 ~~~~g~~~----~~~~~~~~~~~g~~~~~~~~~~ 321 (631)
.+.+.... .....+...|.|+++..++...
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~aGA~ 308 (557)
T PRK07843 275 RAKYQRAPIGTEWTVGAKANTGDGILAGEKLGAA 308 (557)
T ss_pred HHHhcCCcccCcccCCCCCCCcHHHHHHHHcCCC
Confidence 55554210 0122345567777766555543
No 162
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.05 E-value=1.9e-09 Score=111.58 Aligned_cols=113 Identities=27% Similarity=0.396 Sum_probs=80.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
|||+|||||+|||++|..|++. |.+|+|+|+.+ .|+..... .. +
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~------g~~v~lie~~~-~gg~~~~~-----~~-----------------------~- 44 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA------NLKTLIIEGME-PGGQLTTT-----TE-----------------------V- 44 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCCEEEEeccC-CCcceeec-----cc-----------------------c-
Confidence 6999999999999999999998 99999999886 45421100 00 0
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
..+|.. ...+....+...+.+.+++.|+++++ .+|+++..+++ .+.|.+.+
T Consensus 45 -------~~~~~~-----~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~--~~~v~~~~-------------- 95 (300)
T TIGR01292 45 -------ENYPGF-----PEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDR--PFKVKTGD-------------- 95 (300)
T ss_pred -------cccCCC-----CCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCC--eeEEEeCC--------------
Confidence 000100 00133456778888889999999998 78988877653 22466554
Q ss_pred CceEEEcCEEEEecCCCCc
Q 006778 268 RGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (631)
+.++++|.||+|+|.++.
T Consensus 96 -~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 96 -GKEYTAKAVIIATGASAR 113 (300)
T ss_pred -CCEEEeCEEEECCCCCcc
Confidence 568999999999998753
No 163
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.03 E-value=1.6e-09 Score=122.04 Aligned_cols=161 Identities=16% Similarity=0.229 Sum_probs=90.5
Q ss_pred cEEEECCCHHHHHHHHHHH----hhcccCCCCCeEEEEeeCCCCCCcccccc--ccCh--------HhHHHHhhhhhhcC
Q 006778 109 DVVIVGAGPAGLSAAIRLK----QLCREKNVDLSVCVVEKGAEVGAHIISGN--VFEP--------RALNELLPQWKQEE 174 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La----~~~~~~~~G~~V~vlEk~~~~g~~~~~g~--~i~~--------~~l~~l~~~~~~~~ 174 (631)
||||||||.|||+||+.++ +. |++|+||||....++++.+++ .+.. ......+.+.....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~------G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~ 74 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK------GLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDL 74 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC------CCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhc
Confidence 8999999999999999998 56 999999999875444333322 1111 01111111111110
Q ss_pred C----C--ee--eeccCcceEeeccCCcccCCCC-----CCCCCcEE--EeHHHHHHHHHHHHHhcCcEEecCceEEEEE
Q 006778 175 A----P--IR--VPVSSDKFWFLTKDRAFSLPSP-----FSNRGNYV--ISLSQLVRWLGGKAEELGVEIYPGFAASEIL 239 (631)
Q Consensus 175 ~----~--~~--~~~~~~~~~~l~~~~~~~~p~~-----~~~~~~~~--v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~ 239 (631)
. + +. .....+.+.++.. .++.+... ....+.+. .....+.+.|...+.+.+++|+.++.+++++
T Consensus 75 ~gl~d~~lV~~lv~~s~~~i~~L~~-~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll 153 (614)
T TIGR02061 75 MGLVREDLIFDMARHVDDSVHLFEE-WGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLL 153 (614)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHH-cCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEE
Confidence 0 0 00 0001111222221 12222100 00000000 1133555666666667778999999999999
Q ss_pred EcCC--CcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCc
Q 006778 240 YDAD--NKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 240 ~~~~--g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
.+++ |+|+||...+ ..+|+. ..+.|+.||+|||+++.
T Consensus 154 ~d~~~~GrV~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 154 LDKNTPNRIAGAVGFN---VRANEV-------HVFKAKTVIVAAGGAVN 192 (614)
T ss_pred ecCCCCCeEEEEEEEE---eCCCcE-------EEEECCEEEECCCcccc
Confidence 8653 6899987643 123432 57899999999999874
No 164
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.03 E-value=5.6e-09 Score=114.53 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=56.7
Q ss_pred cEEEeHHHHHHHHHHHHHh-cCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCC
Q 006778 206 NYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~ 284 (631)
...|+...+.+.|.+.+.+ .|++++++++|+++..++++.+ .|.+.+. .+|+ ..+++||+||+|.|.+
T Consensus 178 ~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t---~~g~-------~~~i~Ad~VV~AAGaw 246 (497)
T PRK13339 178 GTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDR---NTGE-------KREQVADYVFIGAGGG 246 (497)
T ss_pred ceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEec---CCCc-------eEEEEcCEEEECCCcc
Confidence 4568899999999999865 4899999999999987733433 2432110 0111 1368999999999999
Q ss_pred CchhHHHHHHcCCC
Q 006778 285 GSLSEKLIKNFKLR 298 (631)
Q Consensus 285 s~~~~~l~~~~g~~ 298 (631)
+ ..+.+.+|..
T Consensus 247 S---~~La~~~Gi~ 257 (497)
T PRK13339 247 A---IPLLQKSGIP 257 (497)
T ss_pred h---HHHHHHcCCC
Confidence 7 5677777776
No 165
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.03 E-value=9.3e-08 Score=106.75 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchh
Q 006778 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (631)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~ 288 (631)
..+.+.|.+.+++.|++|++++.|++|..++ +++++|++.+ |.++.||.||.|.+......
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~V~~~~---------------g~~~~ad~VI~a~~~~~~~~ 279 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG-GRATAVHLAD---------------GERLDADAVVSNADLHHTYR 279 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC-CEEEEEEECC---------------CCEEECCEEEECCcHHHHHH
Confidence 5678889999999999999999999998775 5677888876 67899999999998765443
No 166
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.02 E-value=2.7e-09 Score=113.98 Aligned_cols=150 Identities=21% Similarity=0.295 Sum_probs=89.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCC-CCccccccccCh-----HhH-------HHHhhhhhhc-
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV-GAHIISGNVFEP-----RAL-------NELLPQWKQE- 173 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~-g~~~~~g~~i~~-----~~l-------~~l~~~~~~~- 173 (631)
+||+|||||++|+++|+.|++. |.+|+|||+.... |++..+++.+.+ ..+ .++++.+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~------G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 74 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR------GLSVTVIERSSRAQGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKA 74 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCCCCCCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHc
Confidence 5999999999999999999999 9999999998642 333333333211 101 1122222211
Q ss_pred CCCee------eeccCc-----------------ceEeeccCCc-ccCCCC--------CCCCCcEEEeHHHHHHHHHHH
Q 006778 174 EAPIR------VPVSSD-----------------KFWFLTKDRA-FSLPSP--------FSNRGNYVISLSQLVRWLGGK 221 (631)
Q Consensus 174 ~~~~~------~~~~~~-----------------~~~~l~~~~~-~~~p~~--------~~~~~~~~v~~~~l~~~L~~~ 221 (631)
...+. .....+ .+.+++...- -.+|.. ........++...+...|.+.
T Consensus 75 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~ 154 (365)
T TIGR03364 75 GIWVRENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAY 154 (365)
T ss_pred CCCEEeCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHH
Confidence 11110 000000 0122221000 001100 111224557888899999988
Q ss_pred HHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCC
Q 006778 222 AEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 222 a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
+.+. |++|+.+++|+++.. + .|.+.+ | +++||.||+|+|.++
T Consensus 155 ~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~---------------g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 155 LAEQHGVEFHWNTAVTSVET---G---TVRTSR---------------G-DVHADQVFVCPGADF 197 (365)
T ss_pred HHhcCCCEEEeCCeEEEEec---C---eEEeCC---------------C-cEEeCEEEECCCCCh
Confidence 8775 999999999999853 2 366654 3 578999999999986
No 167
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.02 E-value=2e-09 Score=119.03 Aligned_cols=53 Identities=38% Similarity=0.617 Sum_probs=46.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEee------CCCCCCccccccccChHhHH
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEK------GAEVGAHIISGNVFEPRALN 164 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk------~~~~g~~~~~g~~i~~~~l~ 164 (631)
.+|||+||||||||++||+.|++. |.+|+|||+ ...+|+.+.+-+|++.+.+.
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~------g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~ 61 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL------GLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALL 61 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC------CCeEEEEecccCCCCCCCcCCccccccccHHHHHH
Confidence 369999999999999999999999 999999998 34678888888888776653
No 168
>PRK14727 putative mercuric reductase; Provisional
Probab=99.00 E-value=4.4e-09 Score=116.41 Aligned_cols=59 Identities=24% Similarity=0.418 Sum_probs=52.9
Q ss_pred ccccCccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHH
Q 006778 101 MCRESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (631)
Q Consensus 101 ~~~~~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ 165 (631)
+.+...+|||+||||||+|+++|+.|++. |.+|+|+|+...+|+.|.+.+|++.+.|..
T Consensus 10 ~~~~~~~~dvvvIG~G~aG~~~a~~~~~~------g~~v~~ie~~~~~GG~c~n~GciPsk~l~~ 68 (479)
T PRK14727 10 MTRSKLQLHVAIIGSGSAAFAAAIKAAEH------GARVTIIEGADVIGGCCVNVGCVPSKILIR 68 (479)
T ss_pred cccCCCCCcEEEECCCHHHHHHHHHHHhC------CCeEEEEEccCcceeEeccccccccHHHHH
Confidence 44556789999999999999999999999 999999999878999999999999888754
No 169
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.00 E-value=4.1e-09 Score=117.32 Aligned_cols=159 Identities=17% Similarity=0.220 Sum_probs=91.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-cccccC-----hHhHHHHhhhhhhcCCC----
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE-----PRALNELLPQWKQEEAP---- 176 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g~~i~-----~~~l~~l~~~~~~~~~~---- 176 (631)
++||||||+|.|||+||+.+++ |.+|+||||.+..++++. +++.+. .......+.++......
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-------g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~ 75 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-------EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNE 75 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-------CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCH
Confidence 5799999999999999999864 889999999987666552 332221 11122222221111000
Q ss_pred --eeeec--cCcceEeeccCCcccCCCC---------CCCC-CcEEE------eHHHHHHHHHHHHHhcCcEEecCceEE
Q 006778 177 --IRVPV--SSDKFWFLTKDRAFSLPSP---------FSNR-GNYVI------SLSQLVRWLGGKAEELGVEIYPGFAAS 236 (631)
Q Consensus 177 --~~~~~--~~~~~~~l~~~~~~~~p~~---------~~~~-~~~~v------~~~~l~~~L~~~a~~~Gv~i~~g~~v~ 236 (631)
....+ ..+.+.++.. .++.++.. ...+ ...++ ....+.+.|.+.++ .||+|+.++.++
T Consensus 76 ~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~ 153 (510)
T PRK08071 76 RAVRYLVEEGPKEIQELIE-NGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVI 153 (510)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhh
Confidence 00000 0011111110 11111100 0000 00111 13457788887776 589999999999
Q ss_pred EEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCc
Q 006778 237 EILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 237 ~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
+++.++ ++|.||.+.+ .+|+. ..+.||.||+|+|+.+.
T Consensus 154 ~Li~~~-g~v~Gv~~~~----~~g~~-------~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 154 DLIIEN-GRCIGVLTKD----SEGKL-------KRYYADYVVLASGGCGG 191 (510)
T ss_pred heeecC-CEEEEEEEEE----CCCcE-------EEEEcCeEEEecCCCcc
Confidence 998764 7788887654 23332 47899999999999885
No 170
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.99 E-value=4.5e-09 Score=115.14 Aligned_cols=52 Identities=27% Similarity=0.455 Sum_probs=46.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC-CCCccccccccChHhHH
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAHIISGNVFEPRALN 164 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~-~g~~~~~g~~i~~~~l~ 164 (631)
+||||||||||||+++|..|++. |.+|+|+||.+. +|+.|.+.+|++.+.+.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~------g~~V~liE~~~~~~GG~c~~~gciP~k~~~ 55 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA------GKKVALVEESKAMYGGTCINIGCIPTKTLL 55 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC------CCEEEEEecCCcccceeeecCccccchHhh
Confidence 69999999999999999999999 999999999864 68888888888877653
No 171
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.98 E-value=4.2e-09 Score=117.66 Aligned_cols=114 Identities=26% Similarity=0.341 Sum_probs=83.8
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCc
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (631)
...|||+|||||||||++|+.|++. |++|+|+|+. +|+.+... .. +
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~------G~~v~li~~~--~GG~~~~~-----~~-------~-------------- 254 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARK------GIRTGIVAER--FGGQVLDT-----MG-------I-------------- 254 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecC--CCCeeecc-----Cc-------c--------------
Confidence 3469999999999999999999999 9999999864 56532100 00 0
Q ss_pred ceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccc
Q 006778 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (631)
Q Consensus 185 ~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~ 264 (631)
. .++.. -.....++.+.|.+.+++.|++++.+++|.++..+++ .+.|.+.+
T Consensus 255 --~--------~~~~~------~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~--~~~V~~~~----------- 305 (517)
T PRK15317 255 --E--------NFISV------PETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAG--LIEVELAN----------- 305 (517)
T ss_pred --c--------ccCCC------CCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC--eEEEEECC-----------
Confidence 0 00000 0134467888999999999999999999999987653 23466654
Q ss_pred cccCceEEEcCEEEEecCCCC
Q 006778 265 NFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 265 ~f~~g~~i~a~~vV~A~G~~s 285 (631)
|.++.+|.||+|+|+++
T Consensus 306 ----g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 306 ----GAVLKAKTVILATGARW 322 (517)
T ss_pred ----CCEEEcCEEEECCCCCc
Confidence 56899999999999876
No 172
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.97 E-value=4.7e-09 Score=114.78 Aligned_cols=189 Identities=22% Similarity=0.222 Sum_probs=107.5
Q ss_pred EECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC--CCCccccccc--c-C---hH------hHHHHhhhhhhcCC--
Q 006778 112 IVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE--VGAHIISGNV--F-E---PR------ALNELLPQWKQEEA-- 175 (631)
Q Consensus 112 IVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~--~g~~~~~g~~--i-~---~~------~l~~l~~~~~~~~~-- 175 (631)
|||+|.|||+||+.+++. |++|+||||.+. .|+....+.. + . .. ...+++.++.....
T Consensus 1 VVG~G~AGl~AA~~Aa~~------Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRA------GASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGR 74 (432)
T ss_pred CCcccHHHHHHHHHHHhC------CCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCC
Confidence 799999999999999999 999999999874 3443322211 0 0 00 01122222221100
Q ss_pred --Ce--ee--eccCcceEeeccCCcccCCCCCC------CCCcEE-EeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcC
Q 006778 176 --PI--RV--PVSSDKFWFLTKDRAFSLPSPFS------NRGNYV-ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDA 242 (631)
Q Consensus 176 --~~--~~--~~~~~~~~~l~~~~~~~~p~~~~------~~~~~~-v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~ 242 (631)
+. .. ....+.+.|+.+ .++.+..... ....+. -....+.+.|.+.+++.|++|+++++|++++.++
T Consensus 75 ~d~~l~~~~~~~s~~~i~wl~~-~Gv~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~ 153 (432)
T TIGR02485 75 TNESLSRLGIGRGSRDLRWAFA-HGVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEA 153 (432)
T ss_pred CCHHHHHHHHhcchhHHHHHHh-CCceeeecCCCCccccCceeeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecC
Confidence 00 00 001112222221 1111110000 000111 1235688899999999999999999999998764
Q ss_pred -CCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcc---cccCCcceeeEEEEEEee
Q 006778 243 -DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREK---SHAQHQTYALGIKEVWEI 318 (631)
Q Consensus 243 -~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~---~~~~~~~~~~g~~~~~~~ 318 (631)
+++|++|...+ .+.+++||.||+|+|.++.....+.+.++.... ....+...|.|+++..++
T Consensus 154 ~~g~v~gv~~~~--------------~~~~i~ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdgi~ma~~~ 219 (432)
T TIGR02485 154 FDGAHDGPLTTV--------------GTHRITTQALVLAAGGLGANRDWLRKTHGPRADGIANRGTPYQLGGLLLQLLAE 219 (432)
T ss_pred CCCeEEEEEEcC--------------CcEEEEcCEEEEcCCCcccCHHHHHhhcCCccccccccCCCCcccHHHHHHHHc
Confidence 47787877542 135799999999999999866655444443210 112344556777665555
Q ss_pred cCC
Q 006778 319 DEG 321 (631)
Q Consensus 319 ~~~ 321 (631)
...
T Consensus 220 Ga~ 222 (432)
T TIGR02485 220 GAQ 222 (432)
T ss_pred Ccc
Confidence 543
No 173
>PRK14694 putative mercuric reductase; Provisional
Probab=98.97 E-value=6.9e-09 Score=114.63 Aligned_cols=55 Identities=15% Similarity=0.388 Sum_probs=49.3
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHH
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l 166 (631)
..+|||+||||||||+++|+.|++. |++|+|||+. .+|+.|.+.+|++.+.+.+.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~------g~~v~lie~~-~~GGtc~n~GciPsk~l~~~ 58 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATER------GARVTLIERG-TIGGTCVNIGCVPSKIMIRA 58 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC------CCcEEEEEcc-ccccceecCCccccHHHHHH
Confidence 3479999999999999999999999 9999999996 58999999999998887543
No 174
>PRK07233 hypothetical protein; Provisional
Probab=98.97 E-value=2.5e-07 Score=101.09 Aligned_cols=38 Identities=39% Similarity=0.559 Sum_probs=36.0
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~ 152 (631)
+|||||||++||+||+.|++. |++|+|+|+.+.+|+.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~------G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR------GHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCcEEEEEeCCCCCCce
Confidence 589999999999999999999 99999999999999865
No 175
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.96 E-value=4e-09 Score=113.69 Aligned_cols=147 Identities=20% Similarity=0.243 Sum_probs=95.3
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCc
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (631)
.+..+|+|||||||||++|..|.+. |++|+|+||...+|+.+..-...+ .....++..+. ...+.+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~------g~~v~vfEr~~~iGGlW~y~~~~~-~~~ss~Y~~l~-------tn~pKe 69 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLRE------GHEVVVFERTDDIGGLWKYTENVE-VVHSSVYKSLR-------TNLPKE 69 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHC------CCCceEEEecCCccceEeecCccc-ccccchhhhhh-------ccCChh
Confidence 3467999999999999999999999 999999999999998653211111 00000000000 011111
Q ss_pred ceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCc--EEecCceEEEEEEcCCCcEEEEEeCCCccccCCCc
Q 006778 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGV--EIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (631)
Q Consensus 185 ~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv--~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~ 262 (631)
.+.+. ++|.+ .+...+..++.++.++|.+.|+..++ .|.++++|..+....+| -|.|.+.+.+ +.
T Consensus 70 ~~~~~------dfpf~-~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~g-kW~V~~~~~~----~~- 136 (448)
T KOG1399|consen 70 MMGYS------DFPFP-ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKG-KWRVTTKDNG----TQ- 136 (448)
T ss_pred hhcCC------CCCCc-ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCC-ceeEEEecCC----cc-
Confidence 11111 12211 11246667888999999999999875 58899988888777643 3567776511 10
Q ss_pred cccccCceEEEcCEEEEecCCC
Q 006778 263 KENFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 263 ~~~f~~g~~i~a~~vV~A~G~~ 284 (631)
..+.-+|.||+|+|.+
T Consensus 137 ------~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 137 ------IEEEIFDAVVVCTGHY 152 (448)
T ss_pred ------eeEEEeeEEEEcccCc
Confidence 1577899999999987
No 176
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.96 E-value=2.3e-09 Score=118.42 Aligned_cols=57 Identities=25% Similarity=0.398 Sum_probs=49.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeC--------CCCCCccccccccChHhHHHHh
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG--------AEVGAHIISGNVFEPRALNELL 167 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~--------~~~g~~~~~g~~i~~~~l~~l~ 167 (631)
.+|||+||||||+|..+|+.++++. |.+|+|||+. ..+|+.|++-+|++.+.|.+..
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~-----g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a 66 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLY-----KKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGA 66 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhc-----CCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHH
Confidence 3699999999999999999999941 7999999984 4689999999999999986543
No 177
>PLN02507 glutathione reductase
Probab=98.95 E-value=2.4e-09 Score=118.84 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=48.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEee---------CCCCCCccccccccChHhHHH
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEK---------GAEVGAHIISGNVFEPRALNE 165 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk---------~~~~g~~~~~g~~i~~~~l~~ 165 (631)
.+|||+||||||+|+.+|..|+++ |++|+|+|+ ...+|+.|.+-+|++.+.|..
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~------G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~ 86 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANF------GAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVY 86 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCcccccccCCCccceeeccCchhHHHHHH
Confidence 469999999999999999999999 999999996 346899999999999988744
No 178
>PRK13748 putative mercuric reductase; Provisional
Probab=98.95 E-value=8.6e-09 Score=116.61 Aligned_cols=54 Identities=19% Similarity=0.409 Sum_probs=49.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHH
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l 166 (631)
.+||||||||||||+++|+.|++. |++|+|||+. .+|+.|.+.+|++.+.|.+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~------G~~v~lie~~-~~GG~c~n~gciPsk~l~~~ 150 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ------GARVTLIERG-TIGGTCVNVGCVPSKIMIRA 150 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC------CCeEEEEecC-cceeeccccCccccHHHHHH
Confidence 369999999999999999999999 9999999997 78999999999999887543
No 179
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.95 E-value=9.5e-09 Score=114.13 Aligned_cols=144 Identities=24% Similarity=0.308 Sum_probs=87.4
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceEe
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (631)
.|+|||||++||++|..|.+. |++|+++||.+.+||............ ...+ ..+....+.+.+.|
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~------g~~~~~fE~~~~iGG~W~~~~~~~~g~-~~~y-------~sl~~n~sk~~~~f 68 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE------GLEVTCFEKSDDIGGLWRYTENPEDGR-SSVY-------DSLHTNTSKEMMAF 68 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------T-EEEEEESSSSSSGGGCHSTTCCCSE-GGGS-------TT-B-SS-GGGSCC
T ss_pred EEEEECccHHHHHHHHHHHHC------CCCCeEEecCCCCCccCeeCCcCCCCc-cccc-------cceEEeeCchHhcC
Confidence 699999999999999999998 999999999999998543211000000 0000 00011111111111
Q ss_pred eccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCc--EEecCceEEEEEEcCCC---cEEEEEeCCCccccCCCcc
Q 006778 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGV--EIYPGFAASEILYDADN---KVIGIGTNDMGIAKDGSKK 263 (631)
Q Consensus 189 l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv--~i~~g~~v~~i~~~~~g---~v~gV~~~d~g~~~~G~~~ 263 (631)
. .+.+|.. ... ..++.++.++|.+.|+..++ .|.++++|+++...+|. ..+.|++.+ +|+.
T Consensus 69 s----dfp~p~~---~p~-f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-----~g~~- 134 (531)
T PF00743_consen 69 S----DFPFPED---YPD-FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-----DGKE- 134 (531)
T ss_dssp T----TS-HCCC---CSS-SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-----TTEE-
T ss_pred C----CcCCCCC---CCC-CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-----CCeE-
Confidence 1 1111211 112 36889999999999999885 49999999999886542 235676653 2321
Q ss_pred ccccCceEEEcCEEEEecCCCCc
Q 006778 264 ENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 264 ~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
.+-.+|.||+|+|.++.
T Consensus 135 ------~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 135 ------ETEEFDAVVVATGHFSK 151 (531)
T ss_dssp ------EEEEECEEEEEE-SSSC
T ss_pred ------EEEEeCeEEEcCCCcCC
Confidence 45578999999998864
No 180
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.94 E-value=6.8e-09 Score=113.84 Aligned_cols=51 Identities=27% Similarity=0.459 Sum_probs=46.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC-CCCCccccccccChHhH
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA-EVGAHIISGNVFEPRAL 163 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~-~~g~~~~~g~~i~~~~l 163 (631)
.||||||||||||+++|+.|++. |++|+|+|+.+ .+|+.+.+.+|++.+.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~------g~~V~lie~~~~~~GG~~~~~gcip~k~l 54 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKA------GWRVALIEQSNAMYGGTCINIGCIPTKTL 54 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHC------CCeEEEEcCCCCccceeEeeccccchHHH
Confidence 69999999999999999999999 99999999976 47888888888887765
No 181
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.93 E-value=7.7e-09 Score=116.42 Aligned_cols=112 Identities=26% Similarity=0.463 Sum_probs=79.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
.|||+|||||||||+||+.|++. |++|+|||+. .+|+.+..... +
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~------g~~V~liE~~-~~GG~~~~~~~-----i----------------------- 48 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRA------KLDTLIIEKD-DFGGQITITSE-----V----------------------- 48 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHC------CCCEEEEecC-CCCceEEeccc-----c-----------------------
Confidence 59999999999999999999999 9999999996 45653210000 0
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
..+|. .-.+....+.+.+.+.+++.|++++ +..|+++..++ ....|.+.+
T Consensus 49 --------~~~pg------~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~--~~~~V~~~~------------- 98 (555)
T TIGR03143 49 --------VNYPG------ILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDG--DIKTIKTAR------------- 98 (555)
T ss_pred --------ccCCC------CcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecC--CEEEEEecC-------------
Confidence 00010 0013445778888888888999986 67788887654 233466554
Q ss_pred cCceEEEcCEEEEecCCCCc
Q 006778 267 QRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (631)
+ ++.++.||+|+|+++.
T Consensus 99 --g-~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 99 --G-DYKTLAVLIATGASPR 115 (555)
T ss_pred --C-EEEEeEEEECCCCccC
Confidence 3 5889999999999764
No 182
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.93 E-value=2.4e-09 Score=118.34 Aligned_cols=146 Identities=14% Similarity=0.179 Sum_probs=85.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC--------CCCCccccccccChHhHHHHhhhhhhcCCCee
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA--------EVGAHIISGNVFEPRALNELLPQWKQEEAPIR 178 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~--------~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~ 178 (631)
+||||||||||+|+.+|+.|++. |.+|+|+|+.. .+|+.|.+-+|++.+.|.............
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~------G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~-- 73 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY------GAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDS-- 73 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhh--
Confidence 58999999999999999999999 99999999731 479999999999999875442222111000
Q ss_pred eeccCcceEee-ccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccc
Q 006778 179 VPVSSDKFWFL-TKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (631)
Q Consensus 179 ~~~~~~~~~~l-~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~ 257 (631)
..+.+- .....++++..+..... .+ ..+.+.....++..||+++.|... +.+.+.| .|...
T Consensus 74 -----~~~g~~~~~~~~~d~~~~~~~~~~-~v--~~~~~~~~~~~~~~~v~~i~G~a~----f~~~~~v-~v~~~----- 135 (484)
T TIGR01438 74 -----RNYGWNVEETVKHDWNRLSEAVQN-HI--GSLNWGYRVALREKKVNYENAYAE----FVDKHRI-KATNK----- 135 (484)
T ss_pred -----hhcCcccCCCcccCHHHHHHHHHH-HH--HHHHHHHHHHHhhCCcEEEEEEEE----EcCCCEE-EEecc-----
Confidence 000000 00001111100000000 00 122233344556679999987653 2233333 34322
Q ss_pred cCCCccccccCceEEEcCEEEEecCCCCc
Q 006778 258 KDGSKKENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 258 ~~G~~~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
+|+ +.++.+|.||+|+|+++.
T Consensus 136 -~g~-------~~~~~~d~lVIATGs~p~ 156 (484)
T TIGR01438 136 -KGK-------EKIYSAERFLIATGERPR 156 (484)
T ss_pred -CCC-------ceEEEeCEEEEecCCCCC
Confidence 222 257999999999998764
No 183
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.92 E-value=1.6e-08 Score=109.37 Aligned_cols=147 Identities=28% Similarity=0.378 Sum_probs=86.4
Q ss_pred EEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-cc--cc--cChHhHHHHhhhhhhcCCCee----eec
Q 006778 111 VIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SG--NV--FEPRALNELLPQWKQEEAPIR----VPV 181 (631)
Q Consensus 111 vIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g--~~--i~~~~l~~l~~~~~~~~~~~~----~~~ 181 (631)
+|||||+|||+||+.|++. |++|+|+||.+.+|..+. +| .+ .+.....++...+........ ...
T Consensus 1 vIIGgG~aGl~aAi~aa~~------G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE------GLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFS 74 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc------CCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCC
Confidence 6999999999999999998 999999999998876542 22 11 111111111111110000000 000
Q ss_pred cCcceEeeccCCcccCCCCCCCCCcEEE----eHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccc
Q 006778 182 SSDKFWFLTKDRAFSLPSPFSNRGNYVI----SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (631)
Q Consensus 182 ~~~~~~~l~~~~~~~~p~~~~~~~~~~v----~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~ 257 (631)
..+.+.|+. ..++.+.. ... +.+. ....+.+.|.+.+++.|+++++++.|+++..++ + .+.|.+.
T Consensus 75 ~~d~~~~~~-~~Gv~~~~--~~~-g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~-~~~v~~~----- 143 (400)
T TIGR00275 75 NKDLIDFFE-SLGLELKV--EED-GRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD-N-GFGVETS----- 143 (400)
T ss_pred HHHHHHHHH-HcCCeeEE--ecC-CEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-C-eEEEEEC-----
Confidence 001111111 11111100 001 1111 246788899999999999999999999997654 3 3356653
Q ss_pred cCCCccccccCceEEEcCEEEEecCCCC
Q 006778 258 KDGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 258 ~~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
+.++.+|.||+|+|.++
T Consensus 144 -----------~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 144 -----------GGEYEADKVILATGGLS 160 (400)
T ss_pred -----------CcEEEcCEEEECCCCcc
Confidence 35789999999999876
No 184
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.91 E-value=5.8e-09 Score=115.12 Aligned_cols=52 Identities=35% Similarity=0.609 Sum_probs=47.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHH
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l 166 (631)
||||||||||||+++|+.|+++ |++|+|+||.. +|+.+.+-+|++.+.|.+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~------g~~v~lie~~~-~GG~c~n~gciPsk~l~~~ 52 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL------GASVAMVERGP-LGGTCVNVGCVPSKMLLRA 52 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCc-ccCCeeeecEEccHHHHHH
Confidence 7999999999999999999999 99999999976 8999999999999887554
No 185
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.91 E-value=1.1e-08 Score=114.20 Aligned_cols=114 Identities=25% Similarity=0.367 Sum_probs=81.9
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCc
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (631)
...|||+||||||||++||+.|++. |++|+|+|. .+|+..... . .+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~------G~~v~li~~--~~GG~~~~~-----~-------~~~------------- 256 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK------GLRTAMVAE--RIGGQVKDT-----V-------GIE------------- 256 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEec--CCCCccccC-----c-------Ccc-------------
Confidence 3469999999999999999999999 999999985 355532100 0 000
Q ss_pred ceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccc
Q 006778 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (631)
Q Consensus 185 ~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~ 264 (631)
.+ ...+ .....++.+.|.+.+++.|++++.+++|.++..+++ . ..|.+.+
T Consensus 257 --~~------~~~~---------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~-~-~~v~~~~----------- 306 (515)
T TIGR03140 257 --NL------ISVP---------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDG-L-IVVTLES----------- 306 (515)
T ss_pred --cc------cccC---------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCC-e-EEEEECC-----------
Confidence 00 0000 023457788888888889999999999999976553 2 2466554
Q ss_pred cccCceEEEcCEEEEecCCCC
Q 006778 265 NFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 265 ~f~~g~~i~a~~vV~A~G~~s 285 (631)
|.++.+|.+|+|+|++.
T Consensus 307 ----g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 307 ----GEVLKAKSVIVATGARW 323 (515)
T ss_pred ----CCEEEeCEEEECCCCCc
Confidence 56899999999999875
No 186
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.88 E-value=5e-09 Score=116.41 Aligned_cols=52 Identities=19% Similarity=0.391 Sum_probs=46.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC--------CCCCccccccccChHhHH
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA--------EVGAHIISGNVFEPRALN 164 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~--------~~g~~~~~g~~i~~~~l~ 164 (631)
.|||+||||||||++||+.|+++ |++|+|||+.. .+|+.|.+-+|++.+.+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~------G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~ 64 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH------GKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMH 64 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC------CCeEEEEeccCCCCccccccccceeccccccchHHHH
Confidence 58999999999999999999999 99999999631 489999999999987664
No 187
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.88 E-value=2.2e-08 Score=113.57 Aligned_cols=58 Identities=26% Similarity=0.352 Sum_probs=51.3
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeC-CCCCCccccccccChHhHHHHhh
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG-AEVGAHIISGNVFEPRALNELLP 168 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~-~~~g~~~~~g~~i~~~~l~~l~~ 168 (631)
..+|||+|||+||+|.++|+.++++ |++|+|||+. ..+|+.|++.+|++.+.|.....
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~------G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~ 172 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMER------GLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATG 172 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCccccceeEeCCcchHHHHHHHH
Confidence 3479999999999999999999999 9999999975 36899999999999999865543
No 188
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.88 E-value=1.2e-08 Score=112.65 Aligned_cols=51 Identities=45% Similarity=0.621 Sum_probs=46.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHH
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALN 164 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~ 164 (631)
+|||+||||||||++||+.|++. |++|+|||+. .+|+.+.+-+|++.+.+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~------G~~V~lie~~-~~GG~c~~~gciPsk~l~ 54 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL------GLKTAVVEKK-YWGGVCLNVGCIPSKALL 54 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC------CCeEEEEecC-CCCCceecCCccccHHHH
Confidence 59999999999999999999999 9999999986 589999988999887654
No 189
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.88 E-value=5.7e-09 Score=115.16 Aligned_cols=51 Identities=45% Similarity=0.695 Sum_probs=46.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHH
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALN 164 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~ 164 (631)
.|||+||||||||+++|..|++. |++|+|||+ +.+|+.+.+-+|++.+.+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~------G~~v~lie~-~~~GG~~~~~gc~Psk~l~ 51 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL------GLKVALVEK-EYLGGTCLNVGCIPTKALL 51 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC------CCeEEEEec-CCCCCceeecCccchHHHH
Confidence 38999999999999999999999 999999999 7789998888888887653
No 190
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.85 E-value=5.6e-09 Score=114.72 Aligned_cols=51 Identities=22% Similarity=0.407 Sum_probs=44.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHH
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l 166 (631)
+|||||||+||+|..+|. ++. |.+|+++|+. .+|+.|++-+|++.+.|.+.
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~------g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~ 52 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFA------DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYA 52 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHC------CCeEEEEeCC-CCCCeeeccCccchHHHHHH
Confidence 599999999999998864 346 9999999985 58999999999999988644
No 191
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.84 E-value=3.7e-08 Score=109.75 Aligned_cols=63 Identities=27% Similarity=0.381 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch
Q 006778 212 SQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 212 ~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
..+.+.|.+.+++. ||+|+.++.+++++.++ ++|+||.+.+ ++. ...+.||.||+|+|+.+.+
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~-g~v~Gv~~~~-----~~~-------~~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVDD-GAVAGVLAAT-----AGG-------PVVLPARAVVLATGGIGGL 199 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeecC-CEEEEEEEEe-----CCe-------EEEEECCEEEEcCCCCcCC
Confidence 56888888888775 89999999999998664 7888887653 111 1468999999999998753
No 192
>PLN02612 phytoene desaturase
Probab=98.84 E-value=6.9e-07 Score=100.76 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCC
Q 006778 213 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 283 (631)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~ 283 (631)
.+.+.|.+.+++.|++|+++++|++|..++++.+++|++.+ |.++.||.||.|+..
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~---------------G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTN---------------GSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECC---------------CcEEECCEEEECCCH
Confidence 45667777777789999999999999997777777788766 678999999999864
No 193
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.83 E-value=3e-08 Score=117.53 Aligned_cols=197 Identities=14% Similarity=0.188 Sum_probs=100.5
Q ss_pred cCccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccc--ccc-----C-hHhHHHHhhhhhhcCC
Q 006778 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISG--NVF-----E-PRALNELLPQWKQEEA 175 (631)
Q Consensus 104 ~~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g--~~i-----~-~~~l~~l~~~~~~~~~ 175 (631)
+..++||||||||.|||+||+.+++. |++|+|+||.....+....+ +.+ . .......+.+......
T Consensus 10 ~~~~~DVlVVG~G~AGl~AAl~Aa~~------G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~ 83 (897)
T PRK13800 10 LRLDCDVLVIGGGTAGTMAALTAAEH------GANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRAND 83 (897)
T ss_pred ceeecCEEEECcCHHHHHHHHHHHHC------CCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcC
Confidence 34579999999999999999999998 99999999987421111111 011 0 0111111111111000
Q ss_pred Ce------eeec--cCcceEeeccCCcccCCCC---------CCCCCcEE---EeHHHHHHHHHHHHHhc----CcEEec
Q 006778 176 PI------RVPV--SSDKFWFLTKDRAFSLPSP---------FSNRGNYV---ISLSQLVRWLGGKAEEL----GVEIYP 231 (631)
Q Consensus 176 ~~------~~~~--~~~~~~~l~~~~~~~~p~~---------~~~~~~~~---v~~~~l~~~L~~~a~~~----Gv~i~~ 231 (631)
.. ...+ ..+.+.++.. .++.+... ....+.+. -....+...|.+.+.+. +|.+..
T Consensus 84 gl~d~~~v~~~~~~a~~~i~~L~~-~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~ 162 (897)
T PRK13800 84 GIVNQRTVYQTATRGFAMVQRLER-YGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIEN 162 (897)
T ss_pred CCCCHHHHHHHHHhHHHHHHHHHH-cCCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEe
Confidence 00 0000 0011111110 11111100 00001111 02244555566655543 688888
Q ss_pred CceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCcccccCCcceeeE
Q 006778 232 GFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALG 311 (631)
Q Consensus 232 g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~~~~~~~~~~~~g 311 (631)
++.+.+++.+ +|+|.||..-+ .++|+. ..+.||.||+|||+.+.+.... ..+... ....+...|.|
T Consensus 163 ~~~~~~Li~~-~g~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~g~~~~p~-~~~~~~--~~~~~~~tGDG 228 (897)
T PRK13800 163 RLMPVRVLTE-GGRAVGAAALN---TRTGEF-------VTVGAKAVILATGPCGRLGLPA-SGYLYG--TYENPTNAGDG 228 (897)
T ss_pred ceeeEEEEee-CCEEEEEEEEe---cCCCcE-------EEEECCEEEECCCccccCCCCC-cccccC--ccCCCCcccHH
Confidence 8888888865 47888887643 123442 5789999999999998641100 001111 11134556777
Q ss_pred EEEEEeecCC
Q 006778 312 IKEVWEIDEG 321 (631)
Q Consensus 312 ~~~~~~~~~~ 321 (631)
+.+.++....
T Consensus 229 ~amA~raGA~ 238 (897)
T PRK13800 229 YSMAYHAGAE 238 (897)
T ss_pred HHHHHHcCCc
Confidence 6665555444
No 194
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.82 E-value=3.5e-08 Score=108.91 Aligned_cols=53 Identities=36% Similarity=0.593 Sum_probs=47.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHH
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ 165 (631)
++||||||||||+|+++|+.|++. |++|+|||+ ..+|+.+..-+|++.+.+..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~------g~~v~lie~-~~~GG~~~~~gc~psk~l~~ 54 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL------GKKVALIEK-GPLGGTCLNVGCIPSKALIA 54 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC------CCeEEEEeC-CccccceeccceeeHHHHHH
Confidence 469999999999999999999999 999999999 56899888888999887654
No 195
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.82 E-value=3.8e-08 Score=108.45 Aligned_cols=52 Identities=27% Similarity=0.487 Sum_probs=47.4
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHh
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELL 167 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~ 167 (631)
+|+||||||||+++|..|++. |++|+||||.. +|+.|.+.+|++.+.+.+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~------g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a 53 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN------GKNVTLIDEAD-LGGTCLNEGCMPTKSLLESA 53 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC------CCcEEEEECCc-ccccCCCCccccchHHHHHH
Confidence 799999999999999999999 99999999975 79999999999999886543
No 196
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.81 E-value=1.4e-07 Score=92.76 Aligned_cols=167 Identities=17% Similarity=0.215 Sum_probs=91.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc-cccccC----h---HhHH----HHhhhhhhcC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE----P---RALN----ELLPQWKQEE 174 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~-~g~~i~----~---~~l~----~l~~~~~~~~ 174 (631)
...|+|||||+.|.++|+.|++.-.-.-..+.|+++|+..-.|+... .++.+. + ..|. .|...+.+.-
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdey 89 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEY 89 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhh
Confidence 46899999999999999999998100011289999999876554331 222221 0 1111 1111111110
Q ss_pred -------CCee-e---ecc---------CcceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcC-cEEecCc
Q 006778 175 -------APIR-V---PVS---------SDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGF 233 (631)
Q Consensus 175 -------~~~~-~---~~~---------~~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~ 233 (631)
+... . ..+ .+...|+.....-.....-......+++...|++.+++.|++.| |++++|.
T Consensus 90 dGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~Gk 169 (380)
T KOG2852|consen 90 DGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFGK 169 (380)
T ss_pred cCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEee
Confidence 0000 0 000 01111111100000000111123567899999999999999875 9999885
Q ss_pred eEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCc
Q 006778 234 AASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 234 ~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
|.++. ++.+++.+|.... ..+ ++....++.+|+|.|.|+.
T Consensus 170 -v~ev~-dEk~r~n~v~~ae----~~~-------ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 170 -VKEVS-DEKHRINSVPKAE----AED-------TIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred -eEEee-cccccccccchhh----hcC-------ceEEeeeeEEEEecCCCch
Confidence 77775 4446665554432 111 1466788999999999974
No 197
>PRK07846 mycothione reductase; Reviewed
Probab=98.80 E-value=1.6e-08 Score=110.97 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=44.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHh
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELL 167 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~ 167 (631)
+||||||||||+|.++|.. +. |.+|+|+|+. .+|+.|++-+|++.+.|.+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~------G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a 52 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FA------DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAA 52 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HC------CCeEEEEeCC-CCCCcccCcCcchhHHHHHHH
Confidence 4899999999999988865 35 9999999985 589999999999999876543
No 198
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.79 E-value=2.5e-06 Score=94.14 Aligned_cols=42 Identities=36% Similarity=0.488 Sum_probs=37.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCC--CCeEEEEeeCCCCCCccc
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNV--DLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~--G~~V~vlEk~~~~g~~~~ 153 (631)
.||+|||||++||+||+.|++. .+ |++|+|+|+++.+||.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~----~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKE----IPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhc----CCCCCCcEEEEEcCCcCcceEE
Confidence 5899999999999999999986 23 799999999999998754
No 199
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.79 E-value=1.4e-07 Score=103.71 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCcEEecCceEEEEEEc-CC--CcEEEEEeCCCccccCCCccccccCc-eEEEcCEEEEecCCCCc
Q 006778 212 SQLVRWLGGKAEELGVEIYPGFAASEILYD-AD--NKVIGIGTNDMGIAKDGSKKENFQRG-VELRGRITLLAEGCRGS 286 (631)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~-~~--g~v~gV~~~d~g~~~~G~~~~~f~~g-~~i~a~~vV~A~G~~s~ 286 (631)
..+..-|.+.+++.||+|+++++|++|+.+ ++ ++|++|.+.. +|+.+ . ....+|+||+|+|+...
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~-----~~~~~-----~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR-----NGKEE-----TIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe-----CCcee-----EEEecCCCEEEEeCCcCcc
Confidence 456777888999999999999999999986 32 5688887753 22210 1 23467999999998765
No 200
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.77 E-value=1.6e-06 Score=95.52 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCC
Q 006778 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~ 284 (631)
..+.+.|.+.+++.|++|++++.|++|..++++++++|++.+ .+|+. ..++.||.||.|...+
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~----~~~~~------~~~~~a~~VI~a~p~~ 275 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLAD----GEGQR------RFEVTADAYVSAMPVD 275 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEec----CCCCc------eeEEECCEEEEcCCHH
Confidence 356677778888889999999999999877767787888754 01110 1278999999999764
No 201
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.77 E-value=5.7e-08 Score=94.83 Aligned_cols=141 Identities=26% Similarity=0.353 Sum_probs=86.0
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc----cccccCh---------HhHHHHhhhhhhcCC
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII----SGNVFEP---------RALNELLPQWKQEEA 175 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~----~g~~i~~---------~~l~~l~~~~~~~~~ 175 (631)
+|+|||+|++||++|..|++. |.+|+|+||+.-+|+..- .++.++. ..+.+.+..|.+.+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~a------G~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~gl 76 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA------GREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGL 76 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc------CcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCc
Confidence 699999999999999999999 999999999998887542 2333331 224455555655322
Q ss_pred CeeeeccCcceEeeccCCcccCCCCCCCCCcEE--EeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCC
Q 006778 176 PIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYV--ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (631)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~--v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d 253 (631)
. .+..+.++-++... .+..-... .|+ -..+.|.+.|. ...+|+++++|+++-..++ .+.+.+.|
T Consensus 77 V---~~W~~~~~~~~~~~---~~~~~d~~-pyvg~pgmsalak~LA-----tdL~V~~~~rVt~v~~~~~--~W~l~~~~ 142 (331)
T COG3380 77 V---DVWTPAVWTFTGDG---SPPRGDED-PYVGEPGMSALAKFLA-----TDLTVVLETRVTEVARTDN--DWTLHTDD 142 (331)
T ss_pred e---eeccccccccccCC---CCCCCCCC-ccccCcchHHHHHHHh-----ccchhhhhhhhhhheecCC--eeEEEecC
Confidence 1 12222222222111 11100000 122 23355555554 3467889999999988753 45688765
Q ss_pred CccccCCCccccccCceEEEcCEEEEecCC
Q 006778 254 MGIAKDGSKKENFQRGVELRGRITLLAEGC 283 (631)
Q Consensus 254 ~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~ 283 (631)
| +....+|.||+|-=.
T Consensus 143 ------g--------~~~~~~d~vvla~PA 158 (331)
T COG3380 143 ------G--------TRHTQFDDVVLAIPA 158 (331)
T ss_pred ------C--------CcccccceEEEecCC
Confidence 2 356788999988754
No 202
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.77 E-value=1e-07 Score=105.27 Aligned_cols=144 Identities=22% Similarity=0.338 Sum_probs=84.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHh---hhhhhcCCCeeeeccCcc
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELL---PQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~---~~~~~~~~~~~~~~~~~~ 185 (631)
||+|||||++|+.+|..|+++ |.+|+|+||.. +|+.+...+|++.+.+.+.. ..+.... . ..
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~------g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~-~-------~g 67 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL------GADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAA-E-------LG 67 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC------CCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHH-h-------CC
Confidence 799999999999999999999 99999999875 89999999999988775332 2221100 0 00
Q ss_pred eEeec-cCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEE--EcCCCcEEEEEeCCCccccCCCc
Q 006778 186 FWFLT-KDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEIL--YDADNKVIGIGTNDMGIAKDGSK 262 (631)
Q Consensus 186 ~~~l~-~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~--~~~~g~v~gV~~~d~g~~~~G~~ 262 (631)
+..-. ....++++..+... . --...+.+.+.+.+++.||+++.+... .+. .++ ..+ .|.+.+ |+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~gV~~~~g~~~-~~~~~~~~-~~v-~V~~~~------g~- 134 (466)
T PRK07845 68 IRFIDDGEARVDLPAVNARV-K--ALAAAQSADIRARLEREGVRVIAGRGR-LIDPGLGP-HRV-KVTTAD------GG- 134 (466)
T ss_pred cccccCcccccCHHHHHHHH-H--HHHHHHHHHHHHHHHHCCCEEEEEEEE-EeecccCC-CEE-EEEeCC------Cc-
Confidence 00000 00001110000000 0 000122344566677789999988643 222 222 333 455443 21
Q ss_pred cccccCceEEEcCEEEEecCCCCc
Q 006778 263 KENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 263 ~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
..++.+|.||+|||+.+.
T Consensus 135 ------~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 135 ------EETLDADVVLIATGASPR 152 (466)
T ss_pred ------eEEEecCEEEEcCCCCCC
Confidence 137999999999999874
No 203
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.77 E-value=1.3e-07 Score=104.81 Aligned_cols=57 Identities=30% Similarity=0.381 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCC
Q 006778 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 283 (631)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~ 283 (631)
-+.+.+.|.+.+++.|++|+++++|++|..++ |+.++|++.+ |..+.+|.||.+...
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g~g~~~~~~~---------------g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILVEG-GKGVGVRTSD---------------GENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEEeC-CcceEEeccc---------------cceeccceeEecCch
Confidence 47889999999999999999999999999887 4555676665 457899999988776
No 204
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.76 E-value=9.9e-09 Score=102.98 Aligned_cols=149 Identities=16% Similarity=0.295 Sum_probs=93.9
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCc
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (631)
..+||.+|||||.+|+++|.+++.. |++|.|+|..-.+|++|.+-+|++.+.+- .......... +..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~------GAkv~l~E~~f~lGGTCVn~GCVPKKvm~------~~a~~~~~~~-da~ 84 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASH------GAKVALCELPFGLGGTCVNVGCVPKKVMW------YAADYSEEME-DAK 84 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhc------CceEEEEecCCCcCceEEeeccccceeEE------ehhhhhHHhh-hhh
Confidence 3479999999999999999999999 99999999887899999999998876541 1000000000 000
Q ss_pred ce-EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcc
Q 006778 185 KF-WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKK 263 (631)
Q Consensus 185 ~~-~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~ 263 (631)
.+ +.......++++....+...|+ .+|...+...+.+.+|+++.|..- +.+++.| .|...| |+
T Consensus 85 ~yG~~~~~~~~fdW~~ik~krdayi---~RLngIY~~~L~k~~V~~i~G~a~----f~~~~~v-~V~~~d------~~-- 148 (478)
T KOG0405|consen 85 DYGFPINEEGSFDWKVIKQKRDAYI---LRLNGIYKRNLAKAAVKLIEGRAR----FVSPGEV-EVEVND------GT-- 148 (478)
T ss_pred hcCCccccccCCcHHHHHhhhhHHH---HHHHHHHHhhccccceeEEeeeEE----EcCCCce-EEEecC------Ce--
Confidence 11 1111222333332222333343 334444555556678999988753 4444555 577665 22
Q ss_pred ccccCceEEEcCEEEEecCCCCch
Q 006778 264 ENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 264 ~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
...++|+.+++|+|+++..
T Consensus 149 -----~~~Ytak~iLIAtGg~p~~ 167 (478)
T KOG0405|consen 149 -----KIVYTAKHILIATGGRPII 167 (478)
T ss_pred -----eEEEecceEEEEeCCccCC
Confidence 1348999999999998864
No 205
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.75 E-value=1.7e-06 Score=95.64 Aligned_cols=45 Identities=38% Similarity=0.629 Sum_probs=36.5
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~ 153 (631)
+|+|||||++||+||+.|++....++.|.+|+|+|+++.+||.+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 699999999999999999986111112589999999999998764
No 206
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.75 E-value=5.8e-08 Score=108.09 Aligned_cols=167 Identities=22% Similarity=0.314 Sum_probs=96.4
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccc-cccC-----h-----HhHHHHhhh-hhh
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISG-NVFE-----P-----RALNELLPQ-WKQ 172 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g-~~i~-----~-----~~l~~l~~~-~~~ 172 (631)
..++||||||||.|||.||+.+++. |++|+|+||....++++..+ +.+. . ......+.+ +..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~------g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg 77 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEA------GLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKG 77 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhc------CCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhc
Confidence 3579999999999999999999999 99999999999877766421 1110 0 011111100 000
Q ss_pred cC-----CCeeeec--cCcceEeec--------c-CCcc---cCCCCCCCCCcEEEe--HHHHHHHHHHHHHh-cCcEEe
Q 006778 173 EE-----APIRVPV--SSDKFWFLT--------K-DRAF---SLPSPFSNRGNYVIS--LSQLVRWLGGKAEE-LGVEIY 230 (631)
Q Consensus 173 ~~-----~~~~~~~--~~~~~~~l~--------~-~~~~---~~p~~~~~~~~~~v~--~~~l~~~L~~~a~~-~Gv~i~ 230 (631)
.+ ..+.... ....+.++. . ...+ .+......+..|.-+ ...+...|.+++.+ .+++|+
T Consensus 78 ~d~l~dqd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~ 157 (562)
T COG1053 78 GDGLGDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIF 157 (562)
T ss_pred cCCcCCHHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhh
Confidence 00 0000000 000011111 0 0000 000000001122222 25678888888888 567899
Q ss_pred cCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch
Q 006778 231 PGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 231 ~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
.+..+.++..++++.+.||..-+ ..+|+. ..++||.||+|||+.+.+
T Consensus 158 ~~~~~~~l~~~~~~~v~Gvv~~~---~~~g~~-------~~~~akavilaTGG~g~~ 204 (562)
T COG1053 158 DEYFVLDLLVDDGGGVAGVVARD---LRTGEL-------YVFRAKAVILATGGAGRL 204 (562)
T ss_pred hhhhhhhheecCCCcEEEEEEEE---ecCCcE-------EEEecCcEEEccCCceEE
Confidence 99999999988766577776655 244543 678899999999998843
No 207
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.74 E-value=8.5e-07 Score=89.08 Aligned_cols=41 Identities=41% Similarity=0.588 Sum_probs=34.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCC
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV 148 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~ 148 (631)
.++||||||||..|++.|++|++++.. .|++|+|+||....
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd--~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARD--EGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhc--CCceEEEEeccCcc
Confidence 468999999999999999999886332 36999999998753
No 208
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=1.1e-08 Score=108.81 Aligned_cols=148 Identities=16% Similarity=0.258 Sum_probs=87.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcccccc---ccChHhHHHHhhhhhhcCCCeeeec--
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGN---VFEPRALNELLPQWKQEEAPIRVPV-- 181 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~---~i~~~~l~~l~~~~~~~~~~~~~~~-- 181 (631)
.|||+|||||-||+.||.+++|. |.+++++--....-+...|-- .+....+.+-++.++. ......
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARm------G~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG---~Mg~~~D~ 74 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARM------GAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGG---LMGKAADK 74 (621)
T ss_pred CCceEEECCCccchHHHHhhhcc------CCeEEEEEcCCCceeecccccccCCcccceeEEeehhccc---hHHHhhhh
Confidence 59999999999999999999999 999999986643222221111 1111111000011000 000001
Q ss_pred cCcceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCccccCC
Q 006778 182 SSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (631)
Q Consensus 182 ~~~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G 260 (631)
..-++..+....+-.+- .....+++....+++.+.++.. +..|+.+ .|++++.+++.+|+||.+.+
T Consensus 75 ~~IQ~r~LN~sKGPAVr-----a~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~------- 141 (621)
T COG0445 75 AGIQFRMLNSSKGPAVR-----APRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD------- 141 (621)
T ss_pred cCCchhhccCCCcchhc-----chhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCC-------
Confidence 11112222221111100 0022356667777777777764 6778744 67888876644689999998
Q ss_pred CccccccCceEEEcCEEEEecCCC
Q 006778 261 SKKENFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 261 ~~~~~f~~g~~i~a~~vV~A~G~~ 284 (631)
|..+.|+.||++||.+
T Consensus 142 --------G~~~~a~aVVlTTGTF 157 (621)
T COG0445 142 --------GPEFHAKAVVLTTGTF 157 (621)
T ss_pred --------CCeeecCEEEEeeccc
Confidence 8999999999999975
No 209
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.73 E-value=5.7e-06 Score=90.93 Aligned_cols=39 Identities=36% Similarity=0.593 Sum_probs=36.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCC--CeEEEEeeCCCCCCccc
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD--LSVCVVEKGAEVGAHII 153 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G--~~V~vlEk~~~~g~~~~ 153 (631)
+|+|||||+|||+||+.|++. | ++|+|+|+++.+||.+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~------G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK------GPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh------CCCCCEEEEEcCCCCcceEE
Confidence 699999999999999999997 6 89999999999998764
No 210
>PLN02576 protoporphyrinogen oxidase
Probab=98.72 E-value=5.9e-06 Score=92.13 Aligned_cols=42 Identities=40% Similarity=0.554 Sum_probs=37.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~ 153 (631)
++||+|||||++||++|+.|++.. |++|+|+|+++.+||.+.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~-----g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKH-----GVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhc-----CCCEEEEecCCCCCCcee
Confidence 579999999999999999999861 699999999999998754
No 211
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.71 E-value=4e-07 Score=96.19 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=63.0
Q ss_pred cEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCC
Q 006778 206 NYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~ 284 (631)
+.-|+-+.|.+.|.+.+.+. |++++++++|++|...+||. +.|.+.| .++|+ ..+++|++|++..|+.
T Consensus 175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~---~~~~~-------~~~v~a~FVfvGAGG~ 243 (488)
T PF06039_consen 175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKD---LKTGE-------KREVRAKFVFVGAGGG 243 (488)
T ss_pred CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEe---cCCCC-------eEEEECCEEEECCchH
Confidence 34478899999999999887 89999999999999998774 3466554 23444 3789999999999998
Q ss_pred CchhHHHHHHcCCCc
Q 006778 285 GSLSEKLIKNFKLRE 299 (631)
Q Consensus 285 s~~~~~l~~~~g~~~ 299 (631)
+. .|.++.|+.+
T Consensus 244 aL---~LLqksgi~e 255 (488)
T PF06039_consen 244 AL---PLLQKSGIPE 255 (488)
T ss_pred hH---HHHHHcCChh
Confidence 74 5667777763
No 212
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.70 E-value=3.4e-08 Score=95.95 Aligned_cols=117 Identities=30% Similarity=0.418 Sum_probs=72.4
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceEe
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (631)
||||||||+||+++|..|++. +++|+|+|+.+.... ...++....+.+..+....
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~------~~~v~ii~~~~~~~~---~~~~~~~~~~~~~~~~~~~---------------- 55 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP------GAKVLIIEKSPGTPY---NSGCIPSPLLVEIAPHRHE---------------- 55 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEESSSSHHHH---HHSHHHHHHHHHHHHHHHH----------------
T ss_pred CEEEEecHHHHHHHHHHHhcC------CCeEEEEeccccccc---ccccccccccccccccccc----------------
Confidence 799999999999999999988 999999988763221 1222222222111110000
Q ss_pred eccCCcccCCCCCCCCCcEEEeHHHHHH--HHHHHHHhcCcEEecCceEEEEEEcCCCcE----EEEEeCCCccccCCCc
Q 006778 189 LTKDRAFSLPSPFSNRGNYVISLSQLVR--WLGGKAEELGVEIYPGFAASEILYDADNKV----IGIGTNDMGIAKDGSK 262 (631)
Q Consensus 189 l~~~~~~~~p~~~~~~~~~~v~~~~l~~--~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v----~gV~~~d~g~~~~G~~ 262 (631)
. .. .+ .+.+++...+++++.+.++.++.... +.+ ..+... ..+
T Consensus 56 --------------------~--~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~-~~~~~~~~~~~~~-----~~~-- 104 (201)
T PF07992_consen 56 --------------------F--LP-ARLFKLVDQLKNRGVEIRLNAKVVSIDPES-KRVVCPAVTIQVV-----ETG-- 104 (201)
T ss_dssp --------------------H--HH-HHHGHHHHHHHHHTHEEEHHHTEEEEEEST-TEEEETCEEEEEE-----ETT--
T ss_pred --------------------c--cc-ccccccccccccceEEEeeccccccccccc-cccccCcccceee-----ccC--
Confidence 0 00 00 34555566789998899999997765 321 111110 011
Q ss_pred cccccCceEEEcCEEEEecCCCCc
Q 006778 263 KENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 263 ~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
.+.++.+|+||+|+|..+.
T Consensus 105 -----~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 105 -----DGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp -----TEEEEEEEEEEEESTEEEE
T ss_pred -----CceEecCCeeeecCccccc
Confidence 1588999999999996643
No 213
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.70 E-value=1.6e-07 Score=77.00 Aligned_cols=79 Identities=25% Similarity=0.317 Sum_probs=65.5
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceEe
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (631)
.|+|||||+.|+.+|..|++. |.+|+|+++++.+.. .
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~~~~~-~------------------------------------ 37 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSDRLLP-G------------------------------------ 37 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSSSSST-T------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccchhhh-h------------------------------------
Confidence 389999999999999999999 999999999987541 0
Q ss_pred eccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCC
Q 006778 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (631)
Q Consensus 189 l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d 253 (631)
+ ...+.+.+.+.+++.||++++++.+.++..++++ +. |++.|
T Consensus 38 --------~-------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~ 79 (80)
T PF00070_consen 38 --------F-------------DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLED 79 (80)
T ss_dssp --------S-------------SHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEET
T ss_pred --------c-------------CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEec
Confidence 0 0244666778888899999999999999999877 65 88765
No 214
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.70 E-value=1.5e-07 Score=110.20 Aligned_cols=111 Identities=26% Similarity=0.261 Sum_probs=85.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.++|||||+.|+.+|..|++. |.+|+|+|+.+.+.... ++
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~------G~~VtvVe~~~~ll~~~-----ld---------------------------- 186 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNL------GVETHVIEFAPMLMAEQ-----LD---------------------------- 186 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEeccccchhhh-----cC----------------------------
Confidence 3699999999999999999999 99999999876432100 00
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
....+.|.+.+++.||++++++.++++..++++.+..|.+.|
T Consensus 187 ------------------------~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d-------------- 228 (847)
T PRK14989 187 ------------------------QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFAD-------------- 228 (847)
T ss_pred ------------------------HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECC--------------
Confidence 123455777788899999999999999765434455677665
Q ss_pred CceEEEcCEEEEecCCCCchhHHHHHHcCCC
Q 006778 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~ 298 (631)
|.++.+|.||+|+|.++.. .+.+..|+.
T Consensus 229 -G~~i~~D~Vv~A~G~rPn~--~L~~~~Gl~ 256 (847)
T PRK14989 229 -GSELEVDFIVFSTGIRPQD--KLATQCGLA 256 (847)
T ss_pred -CCEEEcCEEEECCCcccCc--hHHhhcCcc
Confidence 6789999999999999863 466666654
No 215
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.70 E-value=4.5e-06 Score=92.25 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCcEEecCceEEEEEEcC--CC--cEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCC
Q 006778 214 LVRWLGGKAEELGVEIYPGFAASEILYDA--DN--KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 214 l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~--~g--~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
+.+.|.+.+++.|++|+.+++|++|..++ ++ ++++|.+.+ |+ .+.++.||.||.|+..+.
T Consensus 221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~------g~------~~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK------PE------GKKVIKADAYVAACDVPG 284 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec------CC------cceEEECCEEEECCChHH
Confidence 45667788888999999999999998864 23 366777653 11 025689999999999764
No 216
>PRK10262 thioredoxin reductase; Provisional
Probab=98.69 E-value=1.2e-07 Score=99.42 Aligned_cols=114 Identities=17% Similarity=0.247 Sum_probs=75.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (631)
..+||+|||||||||+||..|+++ |++|+++|+. ..|+.......
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~------g~~~~~ie~~-~~gg~~~~~~~---------------------------- 49 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARA------NLQPVLITGM-EKGGQLTTTTE---------------------------- 49 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHC------CCCeEEEEee-cCCCceecCce----------------------------
Confidence 468999999999999999999999 9999999965 45543210000
Q ss_pred eEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccc
Q 006778 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (631)
Q Consensus 186 ~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (631)
+ ..+|.. ...++...+.+.+.+.+...++++..+ .|..+...+ +. +.+...+
T Consensus 50 --~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~-~~-~~v~~~~------------ 101 (321)
T PRK10262 50 --V------ENWPGD-----PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQN-RP-FRLTGDS------------ 101 (321)
T ss_pred --E------CCCCCC-----CCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecC-Ce-EEEEecC------------
Confidence 0 001100 001234566777888888888888766 466666554 32 2343322
Q ss_pred ccCceEEEcCEEEEecCCCCc
Q 006778 266 FQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 266 f~~g~~i~a~~vV~A~G~~s~ 286 (631)
..+.+|.||+|+|.+..
T Consensus 102 ----~~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 102 ----GEYTCDALIIATGASAR 118 (321)
T ss_pred ----CEEEECEEEECCCCCCC
Confidence 36899999999999863
No 217
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.69 E-value=2e-08 Score=105.66 Aligned_cols=150 Identities=28% Similarity=0.407 Sum_probs=82.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc---ccccccChHhHHHHhhhhhhcCCCeeeeccC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI---ISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~---~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~ 183 (631)
.+|+|+||.||++|++|+.|.... +.+++.|||.+...+|. +.|..+....|.+|. . ...+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~-----~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlv----t------~~~P~ 66 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG-----DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLV----T------LRDPT 66 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH--------EEEEES-SS--TTGGG--SS-B-SS-TTSSSS----T------TT-TT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC-----CCCEEEEecCCCCCcCCccCCCCCccccccccccC----c------CcCCC
Confidence 489999999999999999999981 59999999998777653 122222211111110 0 00011
Q ss_pred cceEe---eccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCC--cEEEEEeCCCcccc
Q 006778 184 DKFWF---LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADN--KVIGIGTNDMGIAK 258 (631)
Q Consensus 184 ~~~~~---l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g--~v~gV~~~d~g~~~ 258 (631)
..+.| +.....+. .+-+.+...++|.++.++|.-.+++.+-.+.++.+|++|...+++ ..+.|.+.+ .
T Consensus 67 s~~sflnYL~~~~rl~---~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~----~ 139 (341)
T PF13434_consen 67 SPFSFLNYLHEHGRLY---EFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD----S 139 (341)
T ss_dssp STTSHHHHHHHTT-HH---HHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE----T
T ss_pred CcccHHHHHHHcCChh---hhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee----c
Confidence 11111 11111100 000112334789999999999888888668899999999988754 345677743 3
Q ss_pred CCCccccccCceEEEcCEEEEecCCCC
Q 006778 259 DGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
+|+ +.++.|+.||+|+|..+
T Consensus 140 ~g~-------~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 140 DGD-------GETYRARNVVLATGGQP 159 (341)
T ss_dssp TS--------EEEEEESEEEE----EE
T ss_pred CCC-------eeEEEeCeEEECcCCCC
Confidence 343 57899999999999544
No 218
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.65 E-value=2e-06 Score=90.63 Aligned_cols=195 Identities=18% Similarity=0.169 Sum_probs=110.5
Q ss_pred cEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCC
Q 006778 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
...++...+...|.+.+.+.|++++.+++|+++..++ +.+.+|.+.+ | +++||.||+|+|.++
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~-~~~~~v~~~~---------------g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRG-EKVTAIVTPS---------------G-DVQADQVVLAAGAWA 193 (337)
T ss_pred CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC-CEEEEEEcCC---------------C-EEECCEEEEcCChhh
Confidence 4567889999999999999999999999999998765 5677787765 5 799999999999986
Q ss_pred chhHHHHHHcCCCcccccCCcceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEEEEeCCCeEEEEEEEcCCCC
Q 006778 286 SLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYH 365 (631)
Q Consensus 286 ~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~~~~~~~~~~G~~~~~~~~~~~~~ig~~~~~d~~ 365 (631)
. .+.+ ..+. ... .+.+ ..+.+... ..+...... ... ...|+.|..++.+.+|-....+..
T Consensus 194 ~---~l~~-~~~~----~~~-g~~~----~~~~~~~~-~~~~~~~~~--~~~----~~~y~~p~~~g~~~iG~~~~~~~~ 253 (337)
T TIGR02352 194 G---ELLP-LPLR----PVR-GQPL----RLEAPAVP-LLNRPLRAV--VYG----RRVYIVPRRDGRLVVGATMEESGF 253 (337)
T ss_pred h---hccc-CCcc----ccC-ceEE----Eeeccccc-cCCcccceE--EEc----CCEEEEEcCCCeEEEEEeccccCc
Confidence 3 3322 1111 111 1111 11211110 111111000 001 124677878888888855432212
Q ss_pred CCCCCcHHHHHHhh-----cCcchhccccCCceeeecceeeccCCcccCCcccCCCEEEEccC-----CccCCCCCCcch
Q 006778 366 NPFLNPYEEFQKFK-----HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCA-----AGFLNVPKIKGT 435 (631)
Q Consensus 366 ~~~~~~~~~~~~~~-----~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~LiGDA-----A~~~~P~~g~G~ 435 (631)
+...+ .+..+.+. ..|.+ .+.+.. -.+.|+. ..+.++..+||.. ......+.|.|+
T Consensus 254 ~~~~~-~~~~~~l~~~~~~~~P~l----~~~~~~------~~~~g~r---~~t~D~~piig~~~~~~~~~~~~g~~g~G~ 319 (337)
T TIGR02352 254 DTTPT-LGGIKELLRDAYTILPAL----KEARLL------ETWAGLR---PGTPDNLPYIGEHPEDRRLLIATGHYRNGI 319 (337)
T ss_pred cCCCC-HHHHHHHHHHHHHhCCCc----ccCcHH------HheecCC---CCCCCCCCEeCccCCCCCEEEEcccccCce
Confidence 21122 22222221 12222 111111 1123333 3345666777742 334456778899
Q ss_pred HHHHHHHHHHHHHHhc
Q 006778 436 HTAMKSGMLAAEAGFG 451 (631)
Q Consensus 436 ~~Al~sa~~aA~~l~~ 451 (631)
..+...|.++|+.|..
T Consensus 320 ~~~p~~g~~la~~i~~ 335 (337)
T TIGR02352 320 LLAPATAEVIADLILG 335 (337)
T ss_pred ehhhHHHHHHHHHHhc
Confidence 9999999999998763
No 219
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.64 E-value=3.6e-07 Score=98.85 Aligned_cols=108 Identities=27% Similarity=0.358 Sum_probs=82.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|+|||+|+.|+.+|..|++. |.+|+|+|+.+.+....
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~------g~~Vtlv~~~~~~l~~~----------------------------------- 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQR------RCKVTVIELAATVMGRN----------------------------------- 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCcchhhh-----------------------------------
Confidence 4799999999999999999998 99999999987543210
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
....+.+.+.+.+++.||++++++.++++.. + +.+ .|.+.+
T Consensus 184 ----------------------~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~-~~~-~v~l~~-------------- 224 (396)
T PRK09754 184 ----------------------APPPVQRYLLQRHQQAGVRILLNNAIEHVVD-G-EKV-ELTLQS-------------- 224 (396)
T ss_pred ----------------------cCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-C-CEE-EEEECC--------------
Confidence 0023345577777889999999999999865 2 333 466665
Q ss_pred CceEEEcCEEEEecCCCCchhHHHHHHcCCC
Q 006778 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~ 298 (631)
|.++.+|.||.|.|..+. ..+.+..++.
T Consensus 225 -g~~i~aD~Vv~a~G~~pn--~~l~~~~gl~ 252 (396)
T PRK09754 225 -GETLQADVVIYGIGISAN--DQLAREANLD 252 (396)
T ss_pred -CCEEECCEEEECCCCChh--hHHHHhcCCC
Confidence 678999999999999875 3465666665
No 220
>PRK07208 hypothetical protein; Provisional
Probab=98.63 E-value=4.5e-07 Score=100.60 Aligned_cols=43 Identities=42% Similarity=0.536 Sum_probs=39.1
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~ 153 (631)
++..||+|||||++||++|+.|+++ |++|+|+|+++.+||.+.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~------g~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKR------GYPVTVLEADPVVGGISR 44 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC------CCcEEEEecCCCCCceee
Confidence 4567999999999999999999999 999999999999998653
No 221
>PLN02676 polyamine oxidase
Probab=98.63 E-value=8.4e-06 Score=90.30 Aligned_cols=41 Identities=32% Similarity=0.557 Sum_probs=37.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCC-eEEEEeeCCCCCCcc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHI 152 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~-~V~vlEk~~~~g~~~ 152 (631)
..+||+|||||++||++|+.|++. |. +|+|+|++..+|+.+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~------g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA------GIEDILILEATDRIGGRM 66 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc------CCCcEEEecCCCCCCCcc
Confidence 368999999999999999999999 98 699999999888754
No 222
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.63 E-value=9.4e-07 Score=92.65 Aligned_cols=83 Identities=25% Similarity=0.406 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch-hH
Q 006778 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL-SE 289 (631)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~-~~ 289 (631)
...+.+-+.+.++++|++|+++++|.+++..+ +.+.+|.+.+ |.++.+|.||+|.|..+.- -.
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~-~~~~~v~~~~---------------g~~i~~~~vvlA~Grsg~dw~~ 235 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIED-NEVLGVKLTK---------------GEEIEADYVVLAPGRSGRDWFE 235 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecC-CceEEEEccC---------------CcEEecCEEEEccCcchHHHHH
Confidence 46778889999999999999999999999887 4567788887 7899999999999987742 34
Q ss_pred HHHHHcCCCcccccCCcceeeEEE
Q 006778 290 KLIKNFKLREKSHAQHQTYALGIK 313 (631)
Q Consensus 290 ~l~~~~g~~~~~~~~~~~~~~g~~ 313 (631)
.|.+++|+.. .+..+.+|++
T Consensus 236 ~l~~K~Gv~~----~~~p~dIGVR 255 (486)
T COG2509 236 MLHKKLGVKM----RAKPFDIGVR 255 (486)
T ss_pred HHHHhcCccc----ccCCeeEEEE
Confidence 4566778763 3335566665
No 223
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.62 E-value=1.1e-07 Score=100.63 Aligned_cols=91 Identities=18% Similarity=0.262 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHh-cCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhH
Q 006778 211 LSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE 289 (631)
Q Consensus 211 ~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~ 289 (631)
...+.+.|.+++.+ .+|+++.++.+.+++.+++..+.||.+.+ ..++ -.++.|+.||+|||+-+.+-+
T Consensus 132 G~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~----~~~~-------~~~~~a~~vVLATGG~g~ly~ 200 (518)
T COG0029 132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLN----RNGE-------LGTFRAKAVVLATGGLGGLYA 200 (518)
T ss_pred cHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEec----CCCe-------EEEEecCeEEEecCCCccccc
Confidence 46788899999887 68999999999999988753566888765 1111 268999999999999886543
Q ss_pred HHHHHcCCCcccccCCcceeeEEEEEEeecCCC
Q 006778 290 KLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK 322 (631)
Q Consensus 290 ~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~ 322 (631)
.. .......|.|+.+.|......
T Consensus 201 -------~T---TNp~~~~GdGIamA~rAGa~v 223 (518)
T COG0029 201 -------YT---TNPKGSTGDGIAMAWRAGAAV 223 (518)
T ss_pred -------cc---CCCccccccHHHHHHHcCCee
Confidence 22 334456777777666554433
No 224
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=98.62 E-value=8.5e-08 Score=105.55 Aligned_cols=174 Identities=24% Similarity=0.282 Sum_probs=129.1
Q ss_pred chhhhhhhcccccccccccc-cccCCCCCCCCCCccccCCCCCccCCCCCCCcccccccccccccccccccccccccccc
Q 006778 24 FVHSIFRLNQTNNLQSQSSL-ANSIKTPSGYSPFRHFNQNPCFFSSGYFPNGVNLKGFGRNESGVSCAKLFFRSFCSEMC 102 (631)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (631)
++..|++.++.+........ ++.+..++||.|+..+.+.....+...++....+.+. ..
T Consensus 81 ~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am--------------------~~ 140 (793)
T COG1251 81 KVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAM--------------------LD 140 (793)
T ss_pred eeEEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHH--------------------HH
Confidence 57788999988888877654 9999999999999888888877777666653221000 00
Q ss_pred ccCccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeecc
Q 006778 103 RESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVS 182 (631)
Q Consensus 103 ~~~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~ 182 (631)
.....-..+|||||.-||.+|..|.+. |++|.|++-.+.+.. +.+..
T Consensus 141 ~ar~~~~avVIGGGLLGlEaA~~L~~~------Gm~~~Vvh~~~~lMe--------------rQLD~------------- 187 (793)
T COG1251 141 CARNKKKAVVIGGGLLGLEAARGLKDL------GMEVTVVHIAPTLME--------------RQLDR------------- 187 (793)
T ss_pred HHhccCCcEEEccchhhhHHHHHHHhC------CCceEEEeecchHHH--------------Hhhhh-------------
Confidence 000122379999999999999999999 999999997764321 11000
Q ss_pred CcceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCc
Q 006778 183 SDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (631)
Q Consensus 183 ~~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~ 262 (631)
.-...|....++.|++++.+...+++.. ++.+.+|++.|
T Consensus 188 ------------------------------~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~D--------- 226 (793)
T COG1251 188 ------------------------------TAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFAD--------- 226 (793)
T ss_pred ------------------------------HHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEeecC---------
Confidence 1134577888899999999998888766 35677899887
Q ss_pred cccccCceEEEcCEEEEecCCCCchhHHHHHHcCCCc
Q 006778 263 KENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLRE 299 (631)
Q Consensus 263 ~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~ 299 (631)
|..+.||.||.|+|.++ +..++...|+..
T Consensus 227 ------G~~i~ad~VV~a~GIrP--n~ela~~aGlav 255 (793)
T COG1251 227 ------GTEIPADLVVMAVGIRP--NDELAKEAGLAV 255 (793)
T ss_pred ------CCcccceeEEEeccccc--ccHhHHhcCcCc
Confidence 88999999999999999 467777788765
No 225
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.61 E-value=3.4e-07 Score=107.08 Aligned_cols=109 Identities=25% Similarity=0.348 Sum_probs=83.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
..|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... .+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~------G~~Vtvv~~~~~ll~~----------~l------------------------ 180 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNL------GMDVSVIHHAPGLMAK----------QL------------------------ 180 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCeEEEEccCCchhhh----------hc------------------------
Confidence 4799999999999999999999 9999999987643210 00
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
-..+.+.+.+.+++.||++++++.++++..+ +.+.+|.+.|
T Consensus 181 -----------------------d~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~--~~~~~v~~~d-------------- 221 (785)
T TIGR02374 181 -----------------------DQTAGRLLQRELEQKGLTFLLEKDTVEIVGA--TKADRIRFKD-------------- 221 (785)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEeCCceEEEEcC--CceEEEEECC--------------
Confidence 0123455667778899999999999988653 3456787776
Q ss_pred CceEEEcCEEEEecCCCCchhHHHHHHcCCC
Q 006778 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~ 298 (631)
|.++.+|.||+|+|.++. ..+.+..++.
T Consensus 222 -G~~i~~D~Vi~a~G~~Pn--~~la~~~gl~ 249 (785)
T TIGR02374 222 -GSSLEADLIVMAAGIRPN--DELAVSAGIK 249 (785)
T ss_pred -CCEEEcCEEEECCCCCcC--cHHHHhcCCc
Confidence 678999999999999885 3466666654
No 226
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.61 E-value=3.3e-06 Score=89.11 Aligned_cols=43 Identities=44% Similarity=0.598 Sum_probs=39.4
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~ 153 (631)
....||||||+|.+||++|..|.+. |++|+|+|-++.+|+.+.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka------G~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA------GYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc------CcEEEEEeccCCcCceeE
Confidence 3468999999999999999999999 999999999999998764
No 227
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.60 E-value=1.1e-06 Score=95.67 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCC
Q 006778 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
.+.|.+.|.+.+...|++|++++.|.+|..++++++++|++.+ |.+++||.||....-.+
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~---------------Ge~i~a~~VV~~~s~~p 290 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG---------------GEVAKCKLVICDPSYFP 290 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC---------------CcEEECCEEEECccccc
Confidence 3577788888888899999999999999988767888899877 77899999998665543
No 228
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.60 E-value=4.5e-07 Score=97.39 Aligned_cols=109 Identities=22% Similarity=0.295 Sum_probs=82.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
.+|+|||||+.|+.+|..|++. |.+|+++|+.+.+... .
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~------g~~Vtlv~~~~~~l~~--------------~--------------------- 180 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRA------GKAVTLVDNAASLLAS--------------L--------------------- 180 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCeEEEEecCCcccch--------------h---------------------
Confidence 4799999999999999999998 9999999987654210 0
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
++ ..+...+.+.+++.|+++++++.++++..+++ . +.|.+.+
T Consensus 181 ---------~~-------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~-~~v~~~~-------------- 222 (377)
T PRK04965 181 ---------MP-------------PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDS-G-IRATLDS-------------- 222 (377)
T ss_pred ---------CC-------------HHHHHHHHHHHHhCCCEEEECCeEEEEEccCC-E-EEEEEcC--------------
Confidence 00 12345567777888999999999999976542 2 3466665
Q ss_pred CceEEEcCEEEEecCCCCchhHHHHHHcCCC
Q 006778 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~ 298 (631)
|.++.+|.||.|+|..+. ..+.+..++.
T Consensus 223 -g~~i~~D~vI~a~G~~p~--~~l~~~~gl~ 250 (377)
T PRK04965 223 -GRSIEVDAVIAAAGLRPN--TALARRAGLA 250 (377)
T ss_pred -CcEEECCEEEECcCCCcc--hHHHHHCCCC
Confidence 678999999999999874 3466666665
No 229
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.59 E-value=4.6e-07 Score=84.57 Aligned_cols=146 Identities=22% Similarity=0.325 Sum_probs=78.1
Q ss_pred EEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHh-HHHHhhhhhhcCCCeeeeccCcce-Ee
Q 006778 111 VIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRA-LNELLPQWKQEEAPIRVPVSSDKF-WF 188 (631)
Q Consensus 111 vIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~-l~~l~~~~~~~~~~~~~~~~~~~~-~~ 188 (631)
+|||+|++|++++..|.+.. ...+..+|+|+|+.+. |. |....+.. -..++.. ...............+ .|
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-~~~~~~~I~vfd~~~~-G~----G~~~~~~~~~~~llN~-~a~~~s~~~~~~~~~f~~W 73 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-DPKPPLEITVFDPSPF-GA----GGAYRPDQPPSHLLNT-PADQMSLFPDDPGDDFVDW 73 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCc-cc----cccCCCCCChHHhhcc-cccccccccccCCCCHHHH
Confidence 59999999999999999984 3345789999999654 52 22222110 0000000 0000000000000111 23
Q ss_pred eccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHh------cCcEEe-cCceEEEEEEcCCCcEEEEEeCCCccccCCC
Q 006778 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE------LGVEIY-PGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (631)
Q Consensus 189 l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~------~Gv~i~-~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~ 261 (631)
+.....-+ .......-.++|..+-++|.+...+ .|++|. ...+|++|...+++. .|.+.+
T Consensus 74 l~~~~~~~---~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~--~v~~~~-------- 140 (156)
T PF13454_consen 74 LRANGADE---AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGY--RVVTAD-------- 140 (156)
T ss_pred HHhcCccc---ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcE--EEEECC--------
Confidence 32221100 0001113346776666666554432 354432 356899998887663 466666
Q ss_pred ccccccCceEEEcCEEEEecCC
Q 006778 262 KKENFQRGVELRGRITLLAEGC 283 (631)
Q Consensus 262 ~~~~f~~g~~i~a~~vV~A~G~ 283 (631)
|..+.+|.||+|+|.
T Consensus 141 -------g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 141 -------GQSIRADAVVLATGH 155 (156)
T ss_pred -------CCEEEeCEEEECCCC
Confidence 678999999999994
No 230
>PLN02487 zeta-carotene desaturase
Probab=98.58 E-value=3.4e-05 Score=86.51 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCcEEecCceEEEEEEcC--CC--cEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCC
Q 006778 213 QLVRWLGGKAEELGVEIYPGFAASEILYDA--DN--KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~--~g--~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
.|.+.+.+.+++.|++|+++++|.+|+.+. ++ ++++|++.+ +++ +..+.||.||.|.+.+.
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-----~~~-------~~~~~aD~VV~A~p~~~ 360 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-----ATE-------KEIVKADAYVAACDVPG 360 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-----CCC-------ceEEECCEEEECCCHHH
Confidence 366777888889999999999999999874 33 377888731 111 45789999999999763
No 231
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.57 E-value=2e-07 Score=110.17 Aligned_cols=98 Identities=23% Similarity=0.307 Sum_probs=70.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
..+|+|||||||||+||..|++. |++|+|+|+.+.+|+-...|
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~------G~~VtVfE~~~~~GG~l~yG------------------------------- 348 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVE------GFPVTVFEAFHDLGGVLRYG------------------------------- 348 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------CCeEEEEeeCCCCCceEEcc-------------------------------
Confidence 57899999999999999999999 99999999998888732211
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
+| .|... .++.+...+.+++.||+++.++.+ |+ .|.+.+
T Consensus 349 ----------IP-------~~rlp-~~vi~~~i~~l~~~Gv~f~~n~~v--------G~--dit~~~------------- 387 (944)
T PRK12779 349 ----------IP-------EFRLP-NQLIDDVVEKIKLLGGRFVKNFVV--------GK--TATLED------------- 387 (944)
T ss_pred ----------CC-------CCcCh-HHHHHHHHHHHHhhcCeEEEeEEe--------cc--EEeHHH-------------
Confidence 11 01111 234455567777889999988755 21 244443
Q ss_pred cCceEEEcCEEEEecCCC
Q 006778 267 QRGVELRGRITLLAEGCR 284 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~ 284 (631)
.....+|.||+|+|++
T Consensus 388 --l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 388 --LKAAGFWKIFVGTGAG 403 (944)
T ss_pred --hccccCCEEEEeCCCC
Confidence 3445789999999986
No 232
>PRK09897 hypothetical protein; Provisional
Probab=98.56 E-value=3.8e-07 Score=101.07 Aligned_cols=40 Identities=35% Similarity=0.578 Sum_probs=34.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCc
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~ 151 (631)
.+|+|||||++|+++|.+|.+. ...++|+|+|++..+|..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~----~~~l~V~lfEp~~~~G~G 41 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQ----QTPLSISIFEQADEAGVG 41 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhc----CCCCcEEEEecCCCCCcc
Confidence 3799999999999999999885 235799999998877753
No 233
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.52 E-value=1.2e-06 Score=94.94 Aligned_cols=113 Identities=25% Similarity=0.275 Sum_probs=85.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
.-.++|||||+.|+..|..++++ |.+|+|+|+.+.+-.. +
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~L------G~~VTiie~~~~iLp~------------------~---------------- 212 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAAL------GSKVTVVERGDRILPG------------------E---------------- 212 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCCCc------------------C----------------
Confidence 45799999999999999999999 9999999999865320 0
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
-.++.+.+.+.+++.|++++.++.++.+..++++ + .|.+.+ |+
T Consensus 213 ------------------------D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v-~v~~~~------g~----- 255 (454)
T COG1249 213 ------------------------DPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG-V-LVTLED------GE----- 255 (454)
T ss_pred ------------------------CHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe-E-EEEEec------CC-----
Confidence 0355677788888878999999999999887754 3 566654 21
Q ss_pred cCceEEEcCEEEEecCCCCchhHHHHHHcCCC
Q 006778 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~ 298 (631)
+.+++||.|++|+|..+.+-..-.+..|+.
T Consensus 256 --~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~ 285 (454)
T COG1249 256 --GGTIEADAVLVAIGRKPNTDGLGLENAGVE 285 (454)
T ss_pred --CCEEEeeEEEEccCCccCCCCCChhhcCce
Confidence 127899999999998887543334444544
No 234
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.51 E-value=7e-07 Score=106.93 Aligned_cols=122 Identities=23% Similarity=0.319 Sum_probs=76.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (631)
..+||+|||||||||+||+.|++. |++|+|+|+.+.+|+......
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~------G~~V~liD~~~~~GG~~~~~~----------------------------- 206 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA------GARVILVDEQPEAGGSLLSEA----------------------------- 206 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCCCCCeeeccc-----------------------------
Confidence 468999999999999999999998 999999999988776321000
Q ss_pred eEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCc--cccCCCc
Q 006778 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMG--IAKDGSK 262 (631)
Q Consensus 186 ~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g--~~~~G~~ 262 (631)
. .++. .+..++...+.+++.+. +++++.++.|..+.. ++.+..+...+.. ...++..
T Consensus 207 -------~--~~~g---------~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~--~~~v~~v~~~~~~~~~~~~~~~ 266 (985)
T TIGR01372 207 -------E--TIDG---------KPAADWAAATVAELTAMPEVTLLPRTTAFGYYD--HNTVGALERVTDHLDAPPKGVP 266 (985)
T ss_pred -------c--ccCC---------ccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEec--CCeEEEEEEeeeccccccCCcc
Confidence 0 0000 11234444566666666 499999999988743 2233222211100 0001110
Q ss_pred cccccCceEEEcCEEEEecCCCC
Q 006778 263 KENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 263 ~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
. +.-.++++|.||+|+|+..
T Consensus 267 ~---~~~~~i~a~~VILATGa~~ 286 (985)
T TIGR01372 267 R---ERLWRIRAKRVVLATGAHE 286 (985)
T ss_pred c---cceEEEEcCEEEEcCCCCC
Confidence 0 0113689999999999875
No 235
>PRK12831 putative oxidoreductase; Provisional
Probab=98.51 E-value=2.3e-07 Score=102.07 Aligned_cols=41 Identities=32% Similarity=0.499 Sum_probs=36.9
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCc
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~ 151 (631)
....||+|||||||||++|..|++. |++|+|+|+.+.+|+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~------G~~V~v~e~~~~~GG~ 178 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM------GYDVTIFEALHEPGGV 178 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCCCCe
Confidence 3468999999999999999999999 9999999998877763
No 236
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.50 E-value=3.1e-06 Score=94.26 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCC
Q 006778 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~ 284 (631)
...|.+.|.+.+++.|++|+++++|++|..++ +++.+|.+.+. .+|+ +.++.||.||.+...+
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~---~~~~-------~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDS---RKQE-------DLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecC---CCCc-------eEEEECCEEEECCCHH
Confidence 36788889999999999999999999998876 45556766540 0111 2578999999998864
No 237
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.49 E-value=5.4e-06 Score=97.12 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=29.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCC-CeEEEEeeCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGA 146 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G-~~V~vlEk~~ 146 (631)
.-.|||||||..|+-+|..+.+. .| .+|+++.++.
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~Rl-----gGakeVTLVyRr~ 703 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRV-----PGVEKVTVVYRRT 703 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhc-----CCCceEEEEEccC
Confidence 35799999999999999988876 14 4899999875
No 238
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.49 E-value=3.8e-07 Score=94.49 Aligned_cols=74 Identities=16% Similarity=0.319 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCcEEecCceEEEEEEc-CCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHH
Q 006778 213 QLVRWLGGKAEELGVEIYPGFAASEILYD-ADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKL 291 (631)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~-~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l 291 (631)
....+|.....+.+++|+.++.|.+|.++ +++++++|.+.+ .++.. .-..+.++.||+|.|+-. ..+|
T Consensus 194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~----~~~~~-----~~~~~~ak~VIlaAGai~--Tp~L 262 (296)
T PF00732_consen 194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVD----NDGGV-----QRRIVAAKEVILAAGAIG--TPRL 262 (296)
T ss_dssp HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEE----TTTSE-----EEEEEEEEEEEE-SHHHH--HHHH
T ss_pred hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeee----cCCcc-----eeeeccceeEEeccCCCC--Chhh
Confidence 34455555444448999999999999886 446788998876 33320 015678999999999765 3455
Q ss_pred HHHcCC
Q 006778 292 IKNFKL 297 (631)
Q Consensus 292 ~~~~g~ 297 (631)
....|+
T Consensus 263 Ll~SGi 268 (296)
T PF00732_consen 263 LLRSGI 268 (296)
T ss_dssp HHHTTE
T ss_pred hccccc
Confidence 555555
No 239
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.46 E-value=6.4e-07 Score=104.70 Aligned_cols=39 Identities=38% Similarity=0.572 Sum_probs=35.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCC
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~ 150 (631)
...+|+|||||||||++|..|++. |++|+|+|+.+.+|+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~------G~~VtV~Ek~~~~GG 576 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARA------GHPVTVFEREENAGG 576 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc------CCeEEEEecccccCc
Confidence 356899999999999999999999 999999999988776
No 240
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.46 E-value=1.8e-07 Score=99.17 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHH
Q 006778 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKL 291 (631)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l 291 (631)
.++.-.+.=-|.++|..+..-.+|.++..+++++|.|++..| .-+|+. .+|+|+.||.|||.++---++|
T Consensus 224 aRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD---~iTG~e-------~~I~Ak~VVNATGpfsDsIr~M 293 (680)
T KOG0042|consen 224 ARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARD---HITGKE-------YEIRAKVVVNATGPFSDSIRKM 293 (680)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEE---eecCcE-------EEEEEEEEEeCCCCccHHHHhh
Confidence 455555666677789999999999999999999898998887 345553 7899999999999987433333
No 241
>PLN03000 amine oxidase
Probab=98.45 E-value=4.6e-05 Score=87.95 Aligned_cols=41 Identities=39% Similarity=0.558 Sum_probs=37.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~ 153 (631)
..+|+|||||++||++|..|++. |++|+|+|++..+|+.+.
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~------G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRF------GFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHC------CCcEEEEEccCcCCCCcc
Confidence 58999999999999999999999 999999999999888653
No 242
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.45 E-value=8e-07 Score=93.79 Aligned_cols=163 Identities=19% Similarity=0.135 Sum_probs=114.3
Q ss_pred hhhhhhcccccccccccc-cccCCCCCCCCCCccccCCCCCccCCCCCCCcccccccccccccccccccccccccccccc
Q 006778 26 HSIFRLNQTNNLQSQSSL-ANSIKTPSGYSPFRHFNQNPCFFSSGYFPNGVNLKGFGRNESGVSCAKLFFRSFCSEMCRE 104 (631)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (631)
..++-..+++.+.+.-.+ ++.+..++|+++.++..++...-...+.+.. .+.+......
T Consensus 151 ~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~irei--------------------eda~~l~~~~ 210 (478)
T KOG1336|consen 151 VKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREI--------------------EDANRLVAAI 210 (478)
T ss_pred EEeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccH--------------------HHHHHHHHHh
Confidence 344555555666665544 7788888999887766555542222222210 1111111111
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCc
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (631)
...-.||+||+|..|+.+|..|... +++|+++++.+.+-. .+
T Consensus 211 ~~~~~vV~vG~G~ig~Evaa~l~~~------~~~VT~V~~e~~~~~--------------~l------------------ 252 (478)
T KOG1336|consen 211 QLGGKVVCVGGGFIGMEVAAALVSK------AKSVTVVFPEPWLLP--------------RL------------------ 252 (478)
T ss_pred ccCceEEEECchHHHHHHHHHHHhc------CceEEEEccCccchh--------------hh------------------
Confidence 2245699999999999999999988 999999998764321 00
Q ss_pred ceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccc
Q 006778 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (631)
Q Consensus 185 ~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~ 264 (631)
-...+.+.+.+..++.||+++.++.+.++..+++|++..|.+.|
T Consensus 253 -------------------------f~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d----------- 296 (478)
T KOG1336|consen 253 -------------------------FGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD----------- 296 (478)
T ss_pred -------------------------hhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc-----------
Confidence 01234556777788899999999999999999999999999988
Q ss_pred cccCceEEEcCEEEEecCCCCc
Q 006778 265 NFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 265 ~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
|.++.||+||...|+.+.
T Consensus 297 ----g~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 297 ----GKTLEADLVVVGIGIKPN 314 (478)
T ss_pred ----CCEeccCeEEEeeccccc
Confidence 899999999999999875
No 243
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.44 E-value=1.1e-06 Score=96.50 Aligned_cols=113 Identities=21% Similarity=0.342 Sum_probs=69.7
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceEe
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (631)
+|||||||+||+++|..|+++ +++.+|+|||+.+..+... ++ + + ++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~----~~~~~Vtli~~~~~~~~~~-~~-------~------------~----------~~ 47 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRL----NKELEITVYEKTDIVSFGA-CG-------L------------P----------YF 47 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHH----CCCCcEEEEECCCcceeec-CC-------C------------c----------eE
Confidence 699999999999999999987 3357999999987643210 00 0 0 00
Q ss_pred eccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccC
Q 006778 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQR 268 (631)
Q Consensus 189 l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~ 268 (631)
+.. ..-....+.....+.+++.|++++.+++|+++..+++ .| .+...+ +
T Consensus 48 ~~~---------------~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~-~v-~~~~~~-----~--------- 96 (444)
T PRK09564 48 VGG---------------FFDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNK-TI-TVKNLK-----T--------- 96 (444)
T ss_pred ecc---------------ccCCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCC-EE-EEEECC-----C---------
Confidence 000 0000111222233445668999999999999976652 22 232211 0
Q ss_pred ceEEE--cCEEEEecCCCCc
Q 006778 269 GVELR--GRITLLAEGCRGS 286 (631)
Q Consensus 269 g~~i~--a~~vV~A~G~~s~ 286 (631)
|.++. +|.+|+|+|+++.
T Consensus 97 ~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 97 GSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred CCEEEecCCEEEECCCCCCC
Confidence 33455 9999999998763
No 244
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.43 E-value=1.5e-06 Score=94.44 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=60.8
Q ss_pred CCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCC
Q 006778 204 RGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 283 (631)
Q Consensus 204 ~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~ 283 (631)
.+..+++...+++.|+..|.+.|+.|+.++.|++|....++ +.+|.|.. ..|++..||.|+|.
T Consensus 179 P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~-~~gVeT~~----------------G~iet~~~VNaaGv 241 (856)
T KOG2844|consen 179 PGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDK-FGGVETPH----------------GSIETECVVNAAGV 241 (856)
T ss_pred CCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC-ccceeccC----------------cceecceEEechhH
Confidence 34566889999999999999999999999999999887754 44898875 36899999999999
Q ss_pred CCchhHHHHHHcCCC
Q 006778 284 RGSLSEKLIKNFKLR 298 (631)
Q Consensus 284 ~s~~~~~l~~~~g~~ 298 (631)
|.+ .+....+..
T Consensus 242 WAr---~Vg~m~gvk 253 (856)
T KOG2844|consen 242 WAR---EVGAMAGVK 253 (856)
T ss_pred HHH---HhhhhcCCc
Confidence 974 444445554
No 245
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.43 E-value=2.7e-06 Score=97.82 Aligned_cols=43 Identities=35% Similarity=0.519 Sum_probs=38.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcccc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS 154 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~ 154 (631)
...+|+|||||||||++|..|++. |++|+|+|+.+.+|+....
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceeee
Confidence 357999999999999999999999 9999999999888875443
No 246
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.42 E-value=1.1e-05 Score=88.67 Aligned_cols=43 Identities=35% Similarity=0.461 Sum_probs=38.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcccc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS 154 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~ 154 (631)
..++|+|||||+|||++|..|++. |++|+|+|+.+.+|+....
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~------G~~V~vie~~~~~GG~l~~ 174 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA------GHSVTVFEALHKPGGVVTY 174 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC------CCcEEEEecCCCCCcEeee
Confidence 458999999999999999999999 9999999998888765443
No 247
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.42 E-value=3.6e-07 Score=72.29 Aligned_cols=35 Identities=40% Similarity=0.585 Sum_probs=32.1
Q ss_pred EECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc
Q 006778 112 IVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (631)
Q Consensus 112 IVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~ 152 (631)
|||||++||++|+.|++. |.+|+|+|+.+.+|+.+
T Consensus 1 IiGaG~sGl~aA~~L~~~------g~~v~v~E~~~~~GG~~ 35 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA------GYRVTVFEKNDRLGGRA 35 (68)
T ss_dssp EES-SHHHHHHHHHHHHT------TSEEEEEESSSSSSGGG
T ss_pred CEeeCHHHHHHHHHHHHC------CCcEEEEecCcccCcce
Confidence 899999999999999999 99999999999998854
No 248
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.42 E-value=1.8e-06 Score=85.99 Aligned_cols=172 Identities=21% Similarity=0.337 Sum_probs=106.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc--------cccccChHhHHH---------Hhh
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII--------SGNVFEPRALNE---------LLP 168 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~--------~g~~i~~~~l~~---------l~~ 168 (631)
..||+||||||+.||+.|..|.-+ .|+++|.|+||...++.|.. +|....|..|.. ++.
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lr----hp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~ 122 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLR----HPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYE 122 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhc----CCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHH
Confidence 479999999999999999998865 57999999999988765542 222233333321 222
Q ss_pred hhhhcCCCe------eeeccCcce------------------EeeccCCcccC-C-----CCCCCCCcEEEeHHHHHHHH
Q 006778 169 QWKQEEAPI------RVPVSSDKF------------------WFLTKDRAFSL-P-----SPFSNRGNYVISLSQLVRWL 218 (631)
Q Consensus 169 ~~~~~~~~~------~~~~~~~~~------------------~~l~~~~~~~~-p-----~~~~~~~~~~v~~~~l~~~L 218 (631)
-..+...|. .+.+..+.+ +.+....-.++ | .........+++-+.+...+
T Consensus 123 yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~ 202 (453)
T KOG2665|consen 123 YCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSF 202 (453)
T ss_pred HhhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHH
Confidence 222222221 112222221 11111110111 1 11233346678999999999
Q ss_pred HHHHHhcCcEEecCceEEEEEEcCCCcE--EEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHcC
Q 006778 219 GGKAEELGVEIYPGFAASEILYDADNKV--IGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFK 296 (631)
Q Consensus 219 ~~~a~~~Gv~i~~g~~v~~i~~~~~g~v--~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g 296 (631)
.+..+..|.+++.+.++..+..+.++.. -.|..+ | .|.+++.+.||-|+|-.|. .+.+..|
T Consensus 203 ~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~n-------g-------k~ee~r~~~~vtc~gl~sd---r~aa~sg 265 (453)
T KOG2665|consen 203 GEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLN-------G-------KGEEKRTKNVVTCAGLQSD---RCAALSG 265 (453)
T ss_pred HHHHHHhcccccccceeccchhccCCCCCCceEEec-------C-------ccceeEEeEEEEeccccHh---HHHHHhC
Confidence 9999999999999999999987765421 012222 1 1688999999999998874 3444556
Q ss_pred CC
Q 006778 297 LR 298 (631)
Q Consensus 297 ~~ 298 (631)
..
T Consensus 266 c~ 267 (453)
T KOG2665|consen 266 CE 267 (453)
T ss_pred CC
Confidence 55
No 249
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.41 E-value=1.3e-06 Score=93.18 Aligned_cols=36 Identities=31% Similarity=0.303 Sum_probs=33.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCC
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG 149 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g 149 (631)
.||+|||||++|+.+|+.|++. |++|+|+|+.+...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~------Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR------GVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCcEEEEEccCccC
Confidence 5899999999999999999999 99999999877654
No 250
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.40 E-value=7.8e-06 Score=88.28 Aligned_cols=60 Identities=27% Similarity=0.297 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCC
Q 006778 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
.++.+.|.+.+++.|++|+.+++|.++..++ +.+..|.+.+ |+ ...++||.||+|+|.+.
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~~~~------g~-------~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVWTRN------HG-------DIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEeeC------Cc-------eEEEECCEEEEeCCCcc
Confidence 3567788888888999999999999998765 4565554332 22 25799999999999764
No 251
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.40 E-value=5.3e-06 Score=88.65 Aligned_cols=62 Identities=26% Similarity=0.288 Sum_probs=50.8
Q ss_pred eHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCC-C
Q 006778 210 SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR-G 285 (631)
Q Consensus 210 ~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~-s 285 (631)
...+|.+.|.+.++++|++++.+.+|.++..++ +++.+|.+.+ |. ..+++||.||+|+|+| |
T Consensus 261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-~~v~~V~t~~------g~-------~~~l~AD~vVLAaGaw~S 323 (419)
T TIGR03378 261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-NRVTRIHTRN------HR-------DIPLRADHFVLASGSFFS 323 (419)
T ss_pred cHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-CeEEEEEecC------Cc-------cceEECCEEEEccCCCcC
Confidence 457888999999999999999999999998776 5676777654 10 1579999999999999 6
No 252
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.38 E-value=1.5e-05 Score=88.07 Aligned_cols=42 Identities=36% Similarity=0.564 Sum_probs=37.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~ 153 (631)
..++|+|||||||||++|..|++. |++|+|+|+.+.+|+...
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCceee
Confidence 357999999999999999999999 999999999988876543
No 253
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.38 E-value=1.1e-06 Score=82.59 Aligned_cols=153 Identities=24% Similarity=0.374 Sum_probs=88.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
+-||||||+|.+||++|+..++. .|.++|++||.+-.+|+..+-|+.+-+..+.+. | .-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~----rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRK---------P--------Ah 134 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKN----RPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRK---------P--------AH 134 (328)
T ss_pred ccceEEECCCccccceeeeeecc----CCCceEEEEEeeecCCCcccccchhhhhhhhcC---------h--------HH
Confidence 46999999999999999998865 589999999998877775444433221111000 0 00
Q ss_pred EeeccCCcccCCCCCCCCCcEEEe--HHHHHHHHH-HHHHhcCcEEecCceEEEEEEcC--CC--cEEEEEeCCCcc-cc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVIS--LSQLVRWLG-GKAEELGVEIYPGFAASEILYDA--DN--KVIGIGTNDMGI-AK 258 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~--~~~l~~~L~-~~a~~~Gv~i~~g~~v~~i~~~~--~g--~v~gV~~~d~g~-~~ 258 (631)
.|+. ++..+....+.|++- ...+..-.. +.+...+|+++.-+.|.+++..+ +| +|.||.++-.=+ ..
T Consensus 135 LFL~-----EigvpYedegdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qn 209 (328)
T KOG2960|consen 135 LFLQ-----EIGVPYEDEGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQN 209 (328)
T ss_pred HHHH-----HhCCCcccCCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeec
Confidence 0111 011223344566543 334444443 33444579999888888887653 23 455665431000 01
Q ss_pred CCCccccccCceEEEcCEEEEecCCCCch
Q 006778 259 DGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
.|. ..-.+-..+++.+||-++|.-+..
T Consensus 210 Hgt--QsCMDPNviea~~vvS~tGHDGPF 236 (328)
T KOG2960|consen 210 HGT--QSCMDPNVIEAAVVVSTTGHDGPF 236 (328)
T ss_pred cCc--cccCCCCeeeEEEEEEccCCCCCc
Confidence 111 111122578999999999976653
No 254
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.37 E-value=7.1e-05 Score=80.73 Aligned_cols=41 Identities=39% Similarity=0.604 Sum_probs=36.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~ 153 (631)
.|+|||||++||+||++|++. +|.++|+|+|+.+.+||-..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~----~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA----GPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh----CCCCcEEEEecCCCCCceEE
Confidence 589999999999999999999 33499999999999988553
No 255
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.37 E-value=8.7e-07 Score=92.28 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhH
Q 006778 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE 289 (631)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~ 289 (631)
-+.+...+.+.+++.|.+|++...|.+|+.++ |.++||++.| |.+++++.||--++.+-...+
T Consensus 263 ~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-gka~GV~L~d---------------G~ev~sk~VvSNAt~~~Tf~k 325 (561)
T KOG4254|consen 263 MGAVSFAIAEGAKRAGAEIFTKATVQSILLDS-GKAVGVRLAD---------------GTEVRSKIVVSNATPWDTFEK 325 (561)
T ss_pred hhHHHHHHHHHHHhccceeeehhhhhheeccC-CeEEEEEecC---------------CcEEEeeeeecCCchHHHHHH
Confidence 36788899999999999999999999999988 8899999998 899999999998887765433
No 256
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.34 E-value=1.4e-06 Score=95.47 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=35.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~ 151 (631)
..+|+||||||||++||..|++. .+|++|+|+|+.+.+|+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~----~~g~~Vtv~E~~p~pgGl 66 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKA----HDGARVDIIERLPTPFGL 66 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhh----CCCCeEEEEecCCCCcce
Confidence 46899999999999999999872 129999999999988763
No 257
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.34 E-value=7.8e-06 Score=90.67 Aligned_cols=37 Identities=41% Similarity=0.530 Sum_probs=35.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCC
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~ 150 (631)
|||+|||+||+|+.+|..|++. |++|+|||++...|+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~------g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA------GLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC------CCeEEEEeccCccCC
Confidence 6999999999999999999999 999999999998874
No 258
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.34 E-value=2.4e-06 Score=91.70 Aligned_cols=109 Identities=18% Similarity=0.283 Sum_probs=70.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
.+|||||||+||+.+|..|++. .++.+|+||++.+...- +... +...+..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~----~~~~~Itvi~~~~~~~y---~~~~-----l~~~~~~------------------ 52 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ----DAHIPITLITADSGDEY---NKPD-----LSHVFSQ------------------ 52 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh----CcCCCEEEEeCCCCCCc---CcCc-----CcHHHhC------------------
Confidence 5899999999999999999886 45789999998764211 0000 0000000
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHH-HHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVR-WLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~-~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
.....++.. ...+.+++.|++++.+++|+++..+. +. |.+.
T Consensus 53 --------------------~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~--~~--v~~~-------------- 94 (377)
T PRK04965 53 --------------------GQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEA--QV--VKSQ-------------- 94 (377)
T ss_pred --------------------CCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCC--CE--EEEC--------------
Confidence 001112221 12344566899999999999987654 22 4443
Q ss_pred cCceEEEcCEEEEecCCCCc
Q 006778 267 QRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (631)
+.++.+|.+|+|+|+.+.
T Consensus 95 --~~~~~yd~LVlATG~~~~ 112 (377)
T PRK04965 95 --GNQWQYDKLVLATGASAF 112 (377)
T ss_pred --CeEEeCCEEEECCCCCCC
Confidence 468999999999998763
No 259
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.33 E-value=2.4e-06 Score=92.33 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=69.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
..+|||||||+||+++|..|++. ++..+|+|+++.+...... ..++ + .++ ..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~----~~~~~I~li~~e~~~~y~r---~~l~-~---~~~----~~------------- 54 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQ----GFTGELHLFSDERHLPYER---PPLS-K---SML----LE------------- 54 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhh----CCCCCEEEeCCCCCCCCCC---CCCC-H---HHH----CC-------------
Confidence 35799999999999999999997 2234899999876432100 0000 0 000 00
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
.. .. + ..... . +...+.|++++.++.|+.+..+. + .|.+.+
T Consensus 55 -----~~-~~-~-------~~~~~----~----~~~~~~~i~~~~g~~V~~id~~~--~--~v~~~~------------- 95 (396)
T PRK09754 55 -----DS-PQ-L-------QQVLP----A----NWWQENNVHLHSGVTIKTLGRDT--R--ELVLTN------------- 95 (396)
T ss_pred -----CC-cc-c-------cccCC----H----HHHHHCCCEEEcCCEEEEEECCC--C--EEEECC-------------
Confidence 00 00 0 00000 1 12235789999999998887654 2 255555
Q ss_pred cCceEEEcCEEEEecCCCCc
Q 006778 267 QRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (631)
|.++.+|.+|+|||+++.
T Consensus 96 --g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 96 --GESWHWDQLFIATGAAAR 113 (396)
T ss_pred --CCEEEcCEEEEccCCCCC
Confidence 678999999999998863
No 260
>PRK06370 mercuric reductase; Validated
Probab=98.32 E-value=8.1e-06 Score=90.18 Aligned_cols=102 Identities=22% Similarity=0.293 Sum_probs=75.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|+|||||+.|+.+|..|++. |.+|+++|+.+.+... .
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~------G~~Vtli~~~~~~l~~------~----------------------------- 210 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRF------GSEVTVIERGPRLLPR------E----------------------------- 210 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCCCCcc------c-----------------------------
Confidence 5799999999999999999999 9999999998754320 0
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
-..+.+.+.+.+++.|+++++++.|.++..++++..+.+...+
T Consensus 211 -----------------------~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~-------------- 253 (463)
T PRK06370 211 -----------------------DEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNG-------------- 253 (463)
T ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCC--------------
Confidence 0123445667777889999999999999876533222222211
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
.+.++.+|.||+|+|..+..
T Consensus 254 ~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 254 GAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred CceEEEeCEEEECcCCCcCC
Confidence 13679999999999988754
No 261
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.32 E-value=1.2e-06 Score=102.51 Aligned_cols=39 Identities=38% Similarity=0.518 Sum_probs=35.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCC
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~ 150 (631)
...+|+|||||||||++|..|++. |++|+|+|+.+.+|+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~------G~~V~v~e~~~~~GG 468 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR------GYDVTVFEALHEIGG 468 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCCCCCC
Confidence 357999999999999999999999 999999999877775
No 262
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.1e-06 Score=88.42 Aligned_cols=114 Identities=27% Similarity=0.461 Sum_probs=82.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (631)
..|||+||||||||.+||+..+|. |++.-|+-. ++|+.. ++.-.+..+
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARK------GiRTGl~ae--rfGGQv-----ldT~~IENf------------------- 257 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARK------GIRTGLVAE--RFGGQV-----LDTMGIENF------------------- 257 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhh------cchhhhhhh--hhCCee-----ccccchhhe-------------------
Confidence 469999999999999999999999 999877632 245432 111111100
Q ss_pred eEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcC-CCcEEEEEeCCCccccCCCccc
Q 006778 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDA-DNKVIGIGTNDMGIAKDGSKKE 264 (631)
Q Consensus 186 ~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~-~g~v~gV~~~d~g~~~~G~~~~ 264 (631)
+..|. ....+|...|.+..++..|++....++++++... .+....|++.+
T Consensus 258 ---------Isv~~---------teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~n----------- 308 (520)
T COG3634 258 ---------ISVPE---------TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELAN----------- 308 (520)
T ss_pred ---------ecccc---------ccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecC-----------
Confidence 01110 2335788889999999999999888888887742 23455788776
Q ss_pred cccCceEEEcCEEEEecCCC
Q 006778 265 NFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 265 ~f~~g~~i~a~~vV~A~G~~ 284 (631)
|-.++++-||+|+|++
T Consensus 309 ----GavLkaktvIlstGAr 324 (520)
T COG3634 309 ----GAVLKARTVILATGAR 324 (520)
T ss_pred ----CceeccceEEEecCcc
Confidence 8899999999999976
No 263
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.31 E-value=6.7e-05 Score=84.06 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=60.9
Q ss_pred EEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCc
Q 006778 207 YVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 207 ~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
..++...+...|.+.|.++|++|+.+++|+++..++ +.+++|++.|. .+|+ ..+++|+.||.|+|.|+
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~~~---~~g~-------~~~i~a~~VVnAaG~wa- 190 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREG-GRVTGVKVEDH---KTGE-------EERIEAQVVINAAGIWA- 190 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC-CEEEEEEEEEc---CCCc-------EEEEEcCEEEECCCcch-
Confidence 467889999999999999999999999999998765 56777776431 1222 25799999999999996
Q ss_pred hhHHHHHHcCCC
Q 006778 287 LSEKLIKNFKLR 298 (631)
Q Consensus 287 ~~~~l~~~~g~~ 298 (631)
.++.+..+++
T Consensus 191 --~~l~~~~g~~ 200 (516)
T TIGR03377 191 --GRIAEYAGLD 200 (516)
T ss_pred --HHHHHhcCCC
Confidence 4566666654
No 264
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.29 E-value=1.8e-06 Score=91.64 Aligned_cols=101 Identities=31% Similarity=0.476 Sum_probs=75.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCC-------CCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeee
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKN-------VDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV 179 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~-------~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~ 179 (631)
..+|+|||||+.|..+|-.|+....... ..++|.|+|+++.+..+ +
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~------------------~--------- 207 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM------------------F--------- 207 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC------------------C---------
Confidence 3579999999999999999887543211 14699999998865421 0
Q ss_pred eccCcceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccC
Q 006778 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (631)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~ 259 (631)
-.++.....+.++++||+|+.++.|+++..+ +|.+.+
T Consensus 208 -------------------------------~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~------~v~~~~------ 244 (405)
T COG1252 208 -------------------------------PPKLSKYAERALEKLGVEVLLGTPVTEVTPD------GVTLKD------ 244 (405)
T ss_pred -------------------------------CHHHHHHHHHHHHHCCCEEEcCCceEEECCC------cEEEcc------
Confidence 0244556677778899999999999998654 266655
Q ss_pred CCccccccCce-EEEcCEEEEecCCCCc
Q 006778 260 GSKKENFQRGV-ELRGRITLLAEGCRGS 286 (631)
Q Consensus 260 G~~~~~f~~g~-~i~a~~vV~A~G~~s~ 286 (631)
|. +|.++.+|.|+|.+..
T Consensus 245 ---------g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 245 ---------GEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred ---------CCeeEecCEEEEcCCCcCC
Confidence 34 6999999999998864
No 265
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.29 E-value=1.6e-06 Score=95.55 Aligned_cols=39 Identities=38% Similarity=0.624 Sum_probs=35.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCC
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~ 150 (631)
...+|+|||||||||++|..|++. |++|+|+|+.+.+|+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~------g~~V~lie~~~~~gG 177 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK------GYDVTIFEARDKAGG 177 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC------CCeEEEEccCCCCCc
Confidence 357999999999999999999999 999999999987765
No 266
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.29 E-value=1.6e-05 Score=85.42 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=51.8
Q ss_pred EEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCc
Q 006778 207 YVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 207 ~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~ 286 (631)
..++...+...|.+.+++ |++|+.++.|+++..+++ . +.|++.+ |..++||.||+|+|.++.
T Consensus 130 g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~-~-~~v~t~~---------------g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGE-G-WQLLDAN---------------GEVIAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCC-e-EEEEeCC---------------CCEEEcCEEEEcCCcccc
Confidence 346889999999999999 999999999999987653 3 4577765 566899999999999974
No 267
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.1e-06 Score=91.77 Aligned_cols=144 Identities=21% Similarity=0.294 Sum_probs=82.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC-CCCccc--cccccChH-------hHHHHhhhhhhcCC
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAHII--SGNVFEPR-------ALNELLPQWKQEEA 175 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~-~g~~~~--~g~~i~~~-------~l~~l~~~~~~~~~ 175 (631)
..|||||||||-||+.||.++++. |.+.+++-.+-. +|.... +-+.+... +|+.+.......
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~------Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~-- 98 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARL------GARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQ-- 98 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhc------CCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhh--
Confidence 479999999999999999999999 999999887643 433211 11222221 222111111110
Q ss_pred CeeeeccCcceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHh-cCcEEecCceEEEEEEcCCC----cEEEEE
Q 006778 176 PIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADN----KVIGIG 250 (631)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g----~v~gV~ 250 (631)
..-.+..+....+ |... .....++|..+.+.|.+.... .+.+|+.+ +|++++..+.+ ++.||.
T Consensus 99 ------s~vq~k~LNrs~G---PAVw--g~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~ 166 (679)
T KOG2311|consen 99 ------SGVQYKVLNRSKG---PAVW--GLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVV 166 (679)
T ss_pred ------hhhhHHHhhccCC---Cccc--ChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEE
Confidence 0001111111110 0000 002235566666666655543 35777755 56676654433 378899
Q ss_pred eCCCccccCCCccccccCceEEEcCEEEEecCCC
Q 006778 251 TNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 251 ~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~ 284 (631)
+.| |+.+.|+.||+.||.+
T Consensus 167 l~d---------------gt~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 167 LVD---------------GTVVYAESVILTTGTF 185 (679)
T ss_pred Eec---------------CcEeccceEEEeeccc
Confidence 888 8999999999999975
No 268
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.27 E-value=9e-06 Score=90.03 Aligned_cols=103 Identities=24% Similarity=0.313 Sum_probs=76.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|+|||||++|+.+|..|++. |.+|+++|+.+.+... .
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~------g~~Vtli~~~~~il~~------~----------------------------- 219 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADF------GVEVTVVEAADRILPT------E----------------------------- 219 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCeEEEEEecCccCCc------C-----------------------------
Confidence 5899999999999999999998 9999999998754210 0
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
...+.+.+.+.+++.|+++++++.|+++..+.++.+..+.+.+ |+
T Consensus 220 -----------------------~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~------g~------ 264 (472)
T PRK05976 220 -----------------------DAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHN------GE------ 264 (472)
T ss_pred -----------------------CHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeC------Cc------
Confidence 0233455667777889999999999999752223343344333 21
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
..++.+|.||+|+|..+..
T Consensus 265 -~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 265 -EKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred -eEEEEeCEEEEeeCCccCC
Confidence 1579999999999998754
No 269
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.27 E-value=1.2e-06 Score=104.48 Aligned_cols=38 Identities=42% Similarity=0.531 Sum_probs=35.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~ 150 (631)
..+|+|||||||||++|..|++. |++|+|+|+.+.+|+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~------G~~VtV~E~~~~~GG 467 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKY------GVDVTVYEALHVVGG 467 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCcc
Confidence 57999999999999999999999 999999999887775
No 270
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.26 E-value=4.6e-06 Score=91.41 Aligned_cols=37 Identities=22% Similarity=0.523 Sum_probs=32.5
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCC
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG 149 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g 149 (631)
+|||||||+||+.+|..|++. .++.+|+|+|+.+...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~----~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL----DKESDIIIFEKDRDMS 39 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh----CCCCCEEEEECCCCcc
Confidence 699999999999999999886 4578999999987644
No 271
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.25 E-value=3.6e-06 Score=89.96 Aligned_cols=108 Identities=18% Similarity=0.119 Sum_probs=70.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceEe
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (631)
.|||||||+||+.+|..|+++. .++.+|+|||+.+..--. . .+ +.+..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~---~~~~~I~li~~~~~~~~~---~------~~----~~~~~---------------- 48 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP---LPGVRVTLINPSSTTPYS---G------ML----PGMIA---------------- 48 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC---CCCCEEEEECCCCCCccc---c------hh----hHHHh----------------
Confidence 4899999999999999997542 247999999987652110 0 00 00000
Q ss_pred eccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccC
Q 006778 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQR 268 (631)
Q Consensus 189 l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~ 268 (631)
..+...++...+.+.+++.|++++.+ +|+++..+++ .|.+.+
T Consensus 49 ------------------g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~id~~~~----~V~~~~--------------- 90 (364)
T TIGR03169 49 ------------------GHYSLDEIRIDLRRLARQAGARFVIA-EATGIDPDRR----KVLLAN--------------- 90 (364)
T ss_pred ------------------eeCCHHHhcccHHHHHHhcCCEEEEE-EEEEEecccC----EEEECC---------------
Confidence 00111223333456666789999876 7888876652 366665
Q ss_pred ceEEEcCEEEEecCCCCc
Q 006778 269 GVELRGRITLLAEGCRGS 286 (631)
Q Consensus 269 g~~i~a~~vV~A~G~~s~ 286 (631)
|.++.+|++|+|+|+...
T Consensus 91 g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 91 RPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred CCcccccEEEEccCCCCC
Confidence 668999999999998764
No 272
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.9e-06 Score=80.63 Aligned_cols=117 Identities=24% Similarity=0.344 Sum_probs=78.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
.-.|+|||+|||+-.||+.+++. .++.+|+|-.- .++ +..|+.+....-.+-+|
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaara------elkPllfEG~~-~~~-i~pGGQLtTTT~veNfP------------------ 61 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARA------ELKPLLFEGMM-ANG-IAPGGQLTTTTDVENFP------------------ 61 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhc------ccCceEEeeee-ccC-cCCCceeeeeeccccCC------------------
Confidence 34799999999999999999999 99999999643 222 11222221111000000
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
.+|. -+...+|.+.+.+++++.|.+|+.. .|.++..... ...|.+.
T Consensus 62 ---------GFPd--------gi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ssk--pF~l~td-------------- 107 (322)
T KOG0404|consen 62 ---------GFPD--------GITGPELMDKMRKQSERFGTEIITE-TVSKVDLSSK--PFKLWTD-------------- 107 (322)
T ss_pred ---------CCCc--------ccccHHHHHHHHHHHHhhcceeeee-ehhhccccCC--CeEEEec--------------
Confidence 1111 1456788999999999999999865 4777766542 2334443
Q ss_pred cCceEEEcCEEEEecCCCC
Q 006778 267 QRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s 285 (631)
...++||.||+|+|+..
T Consensus 108 --~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 108 --ARPVTADAVILATGASA 124 (322)
T ss_pred --CCceeeeeEEEecccce
Confidence 36899999999999764
No 273
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.24 E-value=7.6e-06 Score=90.39 Aligned_cols=103 Identities=19% Similarity=0.241 Sum_probs=77.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
..+|+|||||++|+.+|..|++. |.+|+++|+.+.+... +
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~------~---------------------------- 209 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASL------GSKVTVIEMLDRILPG------E---------------------------- 209 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCCCCCCC------C----------------------------
Confidence 35899999999999999999999 9999999998653210 0
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
...+.+.+.+.+++.|++++.++.|.++..++ +.+ .|.+.+ |+
T Consensus 210 ------------------------~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~------g~----- 252 (461)
T TIGR01350 210 ------------------------DAEVSKVVAKALKKKGVKILTNTKVTAVEKND-DQV-VYENKG------GE----- 252 (461)
T ss_pred ------------------------CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEE-EEEEeC------Cc-----
Confidence 02334556677788899999999999997665 334 244433 11
Q ss_pred cCceEEEcCEEEEecCCCCchh
Q 006778 267 QRGVELRGRITLLAEGCRGSLS 288 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~~~ 288 (631)
..++.+|.||+|+|..+.+.
T Consensus 253 --~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 253 --TETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred --EEEEEeCEEEEecCCcccCC
Confidence 15799999999999988643
No 274
>PRK06116 glutathione reductase; Validated
Probab=98.23 E-value=1.2e-05 Score=88.64 Aligned_cols=99 Identities=20% Similarity=0.221 Sum_probs=77.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.|+|||+|+.|+.+|..|++. |.+|+++++++.+... ++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~------g~~Vtlv~~~~~~l~~------~~---------------------------- 207 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGL------GSETHLFVRGDAPLRG------FD---------------------------- 207 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCccc------cC----------------------------
Confidence 5799999999999999999998 9999999987643210 00
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
..+.+.+.+.+++.|++++++++|.++..++++.+ .|.+.+
T Consensus 208 ------------------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~-------------- 248 (450)
T PRK06116 208 ------------------------PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLED-------------- 248 (450)
T ss_pred ------------------------HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcC--------------
Confidence 13345667777889999999999999987655533 466555
Q ss_pred CceEEEcCEEEEecCCCCc
Q 006778 268 RGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (631)
|.++.+|.||+|+|..+.
T Consensus 249 -g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 249 -GETLTVDCLIWAIGREPN 266 (450)
T ss_pred -CcEEEeCEEEEeeCCCcC
Confidence 578999999999998764
No 275
>PRK02106 choline dehydrogenase; Validated
Probab=98.22 E-value=1.1e-05 Score=91.41 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHHHc
Q 006778 216 RWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNF 295 (631)
Q Consensus 216 ~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~ 295 (631)
.+|.....+.+++|+.++.|++|+.++ +++++|++.+ .++. -..+.++.||+|.|+..+ .+|....
T Consensus 205 ~~l~~a~~~~nl~i~~~a~V~rI~~~~-~~a~GV~~~~----~~~~-------~~~~~ak~VILaaGai~T--P~LLl~S 270 (560)
T PRK02106 205 AYLDPALKRPNLTIVTHALTDRILFEG-KRAVGVEYER----GGGR-------ETARARREVILSAGAINS--PQLLQLS 270 (560)
T ss_pred HhhccccCCCCcEEEcCCEEEEEEEeC-CeEEEEEEEe----CCcE-------EEEEeeeeEEEccCCCCC--HHHHhhc
Confidence 344433334569999999999999985 6788998765 1122 145789999999998774 4454455
Q ss_pred CCC
Q 006778 296 KLR 298 (631)
Q Consensus 296 g~~ 298 (631)
|+-
T Consensus 271 GIG 273 (560)
T PRK02106 271 GIG 273 (560)
T ss_pred CCC
Confidence 655
No 276
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.21 E-value=8.7e-06 Score=87.39 Aligned_cols=36 Identities=33% Similarity=0.371 Sum_probs=33.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCC
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~ 150 (631)
||+|||||++|+.+|+.|++. |++|+|+|+.+..+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~------G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA------GVPVILYEMRPEKLT 37 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC------CCcEEEEeccccccC
Confidence 799999999999999999999 999999999877554
No 277
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.21 E-value=3.3e-06 Score=93.15 Aligned_cols=39 Identities=36% Similarity=0.618 Sum_probs=35.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCC
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~ 150 (631)
...+|+||||||+||++|..|++. |++|+|+|+.+.+|+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG 178 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGG 178 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCc
Confidence 457999999999999999999999 999999999988776
No 278
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.19 E-value=1.4e-05 Score=88.38 Aligned_cols=100 Identities=19% Similarity=0.258 Sum_probs=77.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
.-.|+|||||+.|+.+|..|++. |.+|+++|+++.+... ++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~d--------------------------- 215 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAAL------GVKVTLINTRDRLLSF------LD--------------------------- 215 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCcCCc------CC---------------------------
Confidence 35799999999999999999999 9999999998754320 00
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
.++...|.+.+++.|+++++++.++++..+++ .+ .+.+.+
T Consensus 216 -------------------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~-~~-~v~~~~------------- 255 (461)
T PRK05249 216 -------------------------DEISDALSYHLRDSGVTIRHNEEVEKVEGGDD-GV-IVHLKS------------- 255 (461)
T ss_pred -------------------------HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCC-eE-EEEECC-------------
Confidence 23355567777888999999999999986553 33 355544
Q ss_pred cCceEEEcCEEEEecCCCCch
Q 006778 267 QRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~~ 287 (631)
|.++.+|.||+|+|.++..
T Consensus 256 --g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 256 --GKKIKADCLLYANGRTGNT 274 (461)
T ss_pred --CCEEEeCEEEEeecCCccc
Confidence 5679999999999988753
No 279
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.18 E-value=2.5e-06 Score=96.37 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHH
Q 006778 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEK 290 (631)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~ 290 (631)
...+...|.+.+++.||+|+.++.+++++.+++|+|+||...+ .++|+. ..+.|+.||+|||+.+.+-
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~~~-- 192 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAIC---IETGET-------VYIKSKATVLATGGAGRIY-- 192 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEE---cCCCcE-------EEEecCeEEECCCCccccc--
Confidence 4678899999999899999999999999987668999987643 134443 5789999999999998641
Q ss_pred HHHHcCCCcccccCCcceeeEEEEEEeecCC
Q 006778 291 LIKNFKLREKSHAQHQTYALGIKEVWEIDEG 321 (631)
Q Consensus 291 l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 321 (631)
... ...+...|.|+.+.++....
T Consensus 193 -----~~~---~~~~~~tGDG~~mA~~aGA~ 215 (570)
T PRK05675 193 -----AST---TNALINTGDGVGMALRAGVP 215 (570)
T ss_pred -----CCC---CCCCCcCcHHHHHHHHcCCC
Confidence 111 23445667766655555443
No 280
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.17 E-value=2.1e-05 Score=86.52 Aligned_cols=99 Identities=22% Similarity=0.174 Sum_probs=76.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.|+|||||..|+..|..|++. |.+|+++|+++.+... ++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~~~il~~------~d---------------------------- 206 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGL------GSETHLVIRHERVLRS------FD---------------------------- 206 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCCcc------cC----------------------------
Confidence 4799999999999999999999 9999999998754320 00
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
..+.+.+.+.+++.||++++++.++++..++++.+ .|.+.+
T Consensus 207 ------------------------~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~-~v~~~~-------------- 247 (450)
T TIGR01421 207 ------------------------SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKL-VIHFED-------------- 247 (450)
T ss_pred ------------------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceE-EEEECC--------------
Confidence 13345567777888999999999999986543423 455544
Q ss_pred Cc-eEEEcCEEEEecCCCCc
Q 006778 268 RG-VELRGRITLLAEGCRGS 286 (631)
Q Consensus 268 ~g-~~i~a~~vV~A~G~~s~ 286 (631)
| .++.+|.||.|+|..+.
T Consensus 248 -g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 248 -GKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred -CcEEEEcCEEEEeeCCCcC
Confidence 4 57999999999998764
No 281
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=1.6e-05 Score=87.86 Aligned_cols=102 Identities=22% Similarity=0.266 Sum_probs=76.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|+|||||+.|+.+|..|++. |.+|+++|+.+.+... +
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~----------------------------- 211 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASL------GAEVTIVEALPRILPG------E----------------------------- 211 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCCcCCc------C-----------------------------
Confidence 4799999999999999999998 9999999998754210 0
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
...+.+.+.+.+++.|++++.+++|+++..+++ .+ .|.+.+ +|+
T Consensus 212 -----------------------~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~v-~v~~~~-----gg~------ 255 (462)
T PRK06416 212 -----------------------DKEISKLAERALKKRGIKIKTGAKAKKVEQTDD-GV-TVTLED-----GGK------ 255 (462)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC-EE-EEEEEe-----CCe------
Confidence 023345567777888999999999999987653 33 354443 011
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
..++.+|.||+|+|..+..
T Consensus 256 -~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 256 -EETLEADYVLVAVGRRPNT 274 (462)
T ss_pred -eEEEEeCEEEEeeCCccCC
Confidence 1679999999999988753
No 282
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.15 E-value=1.9e-05 Score=86.61 Aligned_cols=98 Identities=20% Similarity=0.195 Sum_probs=74.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.|+|||||++|+.+|..|++. |.+|+|+|+.+.+... .
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~------~----------------------------- 196 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKL------GSKVTVLDAASTILPR------E----------------------------- 196 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCccCCC------C-----------------------------
Confidence 4799999999999999999998 9999999998654210 0
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
...+.+.+.+.+++.|+++++++.|+++..++ +.+ .+.. +
T Consensus 197 -----------------------~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~-~~v-~v~~-~-------------- 236 (438)
T PRK07251 197 -----------------------EPSVAALAKQYMEEDGITFLLNAHTTEVKNDG-DQV-LVVT-E-------------- 236 (438)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecC-CEE-EEEE-C--------------
Confidence 01234445666778899999999999997654 333 2332 2
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
|.++.+|.||+|+|..+..
T Consensus 237 -g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 237 -DETYRFDALLYATGRKPNT 255 (438)
T ss_pred -CeEEEcCEEEEeeCCCCCc
Confidence 4689999999999988763
No 283
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.15 E-value=2.7e-05 Score=85.57 Aligned_cols=108 Identities=21% Similarity=0.333 Sum_probs=79.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.|+|||||++|+.+|..|++. |.+|+++++.+.+....
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~~----------------------------------- 188 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL------GKNVRIIQLEDRILPDS----------------------------------- 188 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCcEEEEeCCcccCchh-----------------------------------
Confidence 5799999999999999999998 99999999876432100
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
+ ...+.+.+.+.+++.|++++++++++++..+ +.+..|.+.+
T Consensus 189 ---------~-------------~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~--~~~~~v~~~~-------------- 230 (444)
T PRK09564 189 ---------F-------------DKEITDVMEEELRENGVELHLNEFVKSLIGE--DKVEGVVTDK-------------- 230 (444)
T ss_pred ---------c-------------CHHHHHHHHHHHHHCCCEEEcCCEEEEEecC--CcEEEEEeCC--------------
Confidence 0 0234566777888899999999999998542 4454555543
Q ss_pred CceEEEcCEEEEecCCCCchhHHHHHHcCCC
Q 006778 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~ 298 (631)
.++.+|.||+|+|..+. ..+.+..++.
T Consensus 231 --~~i~~d~vi~a~G~~p~--~~~l~~~gl~ 257 (444)
T PRK09564 231 --GEYEADVVIVATGVKPN--TEFLEDTGLK 257 (444)
T ss_pred --CEEEcCEEEECcCCCcC--HHHHHhcCcc
Confidence 47999999999998774 3344555543
No 284
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.15 E-value=6e-06 Score=96.72 Aligned_cols=109 Identities=22% Similarity=0.251 Sum_probs=71.0
Q ss_pred EEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceEee
Q 006778 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWFL 189 (631)
Q Consensus 110 VvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l 189 (631)
|||||||+||+.+|..|.+.. ..+.+|+|||+.+.++.... .|..++..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~---~~~~~Itvi~~e~~~~y~r~--------~L~~~l~g-------------------- 49 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLN---RHMFEITIFGEEPHPNYNRI--------LLSSVLQG-------------------- 49 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcC---CCCCeEEEEeCCCCCCcccc--------cccHHHCC--------------------
Confidence 699999999999999998762 13689999999886542100 00000000
Q ss_pred ccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCc
Q 006778 190 TKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRG 269 (631)
Q Consensus 190 ~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g 269 (631)
. .+..++.....+.+++.|++++.+++|+.|..+. + .|.+.+ |
T Consensus 50 --~----------------~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~--k--~V~~~~---------------g 92 (785)
T TIGR02374 50 --E----------------ADLDDITLNSKDWYEKHGITLYTGETVIQIDTDQ--K--QVITDA---------------G 92 (785)
T ss_pred --C----------------CCHHHccCCCHHHHHHCCCEEEcCCeEEEEECCC--C--EEEECC---------------C
Confidence 0 0001111112334456899999999999987654 2 256655 6
Q ss_pred eEEEcCEEEEecCCCCc
Q 006778 270 VELRGRITLLAEGCRGS 286 (631)
Q Consensus 270 ~~i~a~~vV~A~G~~s~ 286 (631)
.++.+|.+|+|+|+.+.
T Consensus 93 ~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 93 RTLSYDKLILATGSYPF 109 (785)
T ss_pred cEeeCCEEEECCCCCcC
Confidence 78999999999998763
No 285
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.14 E-value=5.9e-06 Score=87.90 Aligned_cols=38 Identities=47% Similarity=0.579 Sum_probs=35.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~ 150 (631)
..+|+|||||++|+++|..|++. |.+|+|+|+.+.+++
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~------g~~v~lie~~~~~gg 55 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL------GYEVHVYDKLPEPGG 55 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC------CCcEEEEeCCCCCCc
Confidence 46899999999999999999998 999999999887765
No 286
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.14 E-value=4.3e-06 Score=95.97 Aligned_cols=39 Identities=36% Similarity=0.564 Sum_probs=36.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~ 151 (631)
..+|+|||||||||++|..|++. |++|+|+|+.+.+|+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~ 231 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGM 231 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCce
Confidence 47999999999999999999999 9999999999888763
No 287
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.13 E-value=1.3e-05 Score=94.13 Aligned_cols=111 Identities=19% Similarity=0.207 Sum_probs=71.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
.+|||||+|+||+.+|..|.+... .++.+|+||++.+.+.... + .|...+..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~--~~~~~Itvi~~e~~~~Y~r----~----~L~~~~~~------------------ 55 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKAD--AANFDITVFCEEPRIAYDR----V----HLSSYFSH------------------ 55 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCC--CCCCeEEEEECCCCCcccC----C----cchHhHcC------------------
Confidence 479999999999999999986511 1368999999988654210 0 00000000
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
. ...++.....+..++.|++++.+++|+++..+. ++ |.+.+
T Consensus 56 ----~-----------------~~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~~--V~~~~-------------- 96 (847)
T PRK14989 56 ----H-----------------TAEELSLVREGFYEKHGIKVLVGERAITINRQE--KV--IHSSA-------------- 96 (847)
T ss_pred ----C-----------------CHHHccCCCHHHHHhCCCEEEcCCEEEEEeCCC--cE--EEECC--------------
Confidence 0 001111112233456799999999998886643 23 55555
Q ss_pred CceEEEcCEEEEecCCCCc
Q 006778 268 RGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (631)
|.++.+|.+|+|||+++.
T Consensus 97 -G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 97 -GRTVFYDKLIMATGSYPW 114 (847)
T ss_pred -CcEEECCEEEECCCCCcC
Confidence 678999999999998764
No 288
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.13 E-value=2.7e-05 Score=86.05 Aligned_cols=102 Identities=17% Similarity=0.240 Sum_probs=75.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|+|||+|+.|+.+|..|++. |.+|+|+|+.+.+... .+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~d---------------------------- 206 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL------GSEVTILQRSDRLLPR------EE---------------------------- 206 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCCcCCCc------cC----------------------------
Confidence 5799999999999999999999 9999999998654210 00
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
..+...+.+.+++.||+++++++|+++..++++ + .|.+.+ +|.
T Consensus 207 ------------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~-~-~v~~~~-----~~~------ 249 (463)
T TIGR02053 207 ------------------------PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGG-K-IITVEK-----PGG------ 249 (463)
T ss_pred ------------------------HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCE-E-EEEEEe-----CCC------
Confidence 123445666777889999999999999765432 2 344321 111
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
+.++.+|.||+|+|..+..
T Consensus 250 -~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 250 -QGEVEADELLVATGRRPNT 268 (463)
T ss_pred -ceEEEeCEEEEeECCCcCC
Confidence 3679999999999987753
No 289
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.12 E-value=2.7e-05 Score=78.35 Aligned_cols=59 Identities=25% Similarity=0.282 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCC
Q 006778 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~ 284 (631)
-++.+.|..+.++.|+.+..|-+|.+..... ++|..|.+.+.. ...++||..|+|+|++
T Consensus 258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~~v~~i~trn~~-------------diP~~a~~~VLAsGsf 316 (421)
T COG3075 258 IRLHNQLQRQFEQLGGLWMPGDEVKKATCKG-GRVTEIYTRNHA-------------DIPLRADFYVLASGSF 316 (421)
T ss_pred hhHHHHHHHHHHHcCceEecCCceeeeeeeC-CeEEEEEecccc-------------cCCCChhHeeeecccc
Confidence 4677888889999999999999999998887 778888877521 2568999999999965
No 290
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.12 E-value=3e-05 Score=85.03 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=77.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|+|||||+.|+.+|..|++. |.+|+++|+.+.+... ++
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~------g~~Vtli~~~~~l~~~------~d---------------------------- 188 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYER------GLHPTLIHRSDKINKL------MD---------------------------- 188 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEecccccchh------cC----------------------------
Confidence 4799999999999999999998 9999999987654210 00
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
.++.+.+.+.+++.||+++++++++++.. . .|.+.+
T Consensus 189 ------------------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~v~~~~-------------- 224 (438)
T PRK13512 189 ------------------------ADMNQPILDELDKREIPYRLNEEIDAING---N---EVTFKS-------------- 224 (438)
T ss_pred ------------------------HHHHHHHHHHHHhcCCEEEECCeEEEEeC---C---EEEECC--------------
Confidence 13345567777888999999999998852 1 255544
Q ss_pred CceEEEcCEEEEecCCCCchhHHHHHHcCCC
Q 006778 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~ 298 (631)
|.++.+|.||.|+|.++.. .+.+..++.
T Consensus 225 -g~~~~~D~vl~a~G~~pn~--~~l~~~gl~ 252 (438)
T PRK13512 225 -GKVEHYDMIIEGVGTHPNS--KFIESSNIK 252 (438)
T ss_pred -CCEEEeCEEEECcCCCcCh--HHHHhcCcc
Confidence 5678999999999998753 344445543
No 291
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.12 E-value=1.9e-05 Score=84.04 Aligned_cols=158 Identities=20% Similarity=0.239 Sum_probs=87.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeec-cCcce
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPV-SSDKF 186 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~-~~~~~ 186 (631)
++|+|||+|++|+.+|.+|.+..+. ...|.|+|+.+.+|...-...--+...++- + .........- ..+-.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~---~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv--~---a~~mS~~~pD~p~~F~ 73 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRP---SGLISIFEPRPNFGQGIAYSTEEPEHLLNV--P---AARMSAFAPDIPQDFV 73 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCC---CCceEEeccccccCCCccCCCCCchhhhcc--c---cccccccCCCCchHHH
Confidence 6899999999999999999986322 233999999998886432221111111100 0 0000000000 11111
Q ss_pred EeeccC-CcccCCCCCCCCCcEEEeHHHHHHHHHHHHHh---cC----cEEecCceEEEEEEcCCCcEEEEEeCCCcccc
Q 006778 187 WFLTKD-RAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE---LG----VEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (631)
Q Consensus 187 ~~l~~~-~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~---~G----v~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~ 258 (631)
.|+... .....+......+.....|..+-++|.++... .+ +.. ..++++++..++++....|...|
T Consensus 74 ~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~-~~~~a~~~~~~~n~~~~~~~~~~----- 147 (474)
T COG4529 74 RWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRT-IREEATSVRQDTNAGGYLVTTAD----- 147 (474)
T ss_pred HHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeE-EeeeeecceeccCCceEEEecCC-----
Confidence 333321 11111222333445556777777776665432 22 333 35566677666555555577666
Q ss_pred CCCccccccCceEEEcCEEEEecCCCCchhH
Q 006778 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSE 289 (631)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~ 289 (631)
|....||.+|+|||.-.....
T Consensus 148 ----------g~~~~ad~~Vlatgh~~~~~~ 168 (474)
T COG4529 148 ----------GPSEIADIIVLATGHSAPPAD 168 (474)
T ss_pred ----------CCeeeeeEEEEeccCCCCCcc
Confidence 778899999999997654433
No 292
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.11 E-value=3.1e-05 Score=84.61 Aligned_cols=107 Identities=17% Similarity=0.278 Sum_probs=78.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.|+|||||++|+.+|..|++. |.+|+++++.+.+....
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~~~~~----------------------------------- 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER------GKNVTLIHRSERILNKL----------------------------------- 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEECCcccCccc-----------------------------------
Confidence 4799999999999999999998 99999999876541100
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
.+ ..+.+.+.+.+++.||++++++.+.++..+ +.+ +.+.+
T Consensus 177 ---------------------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~-------------- 216 (427)
T TIGR03385 177 ---------------------FD-EEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTS-------------- 216 (427)
T ss_pred ---------------------cC-HHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcC--------------
Confidence 00 233455677778889999999999998653 333 34444
Q ss_pred CceEEEcCEEEEecCCCCchhHHHHHHcCCC
Q 006778 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~ 298 (631)
|.++.+|.||.|+|.++. ..+.+..++.
T Consensus 217 -g~~i~~D~vi~a~G~~p~--~~~l~~~gl~ 244 (427)
T TIGR03385 217 -GGVYQADMVILATGIKPN--SELAKDSGLK 244 (427)
T ss_pred -CCEEEeCEEEECCCccCC--HHHHHhcCcc
Confidence 568999999999999874 3344555544
No 293
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.09 E-value=3.2e-05 Score=85.04 Aligned_cols=98 Identities=20% Similarity=0.325 Sum_probs=75.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.|+|||+|+.|+.+|..+++. |.+|+++|+++.+... ++
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~------G~~Vtli~~~~~~l~~------~d---------------------------- 206 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGL------GVQVTLIYRGELILRG------FD---------------------------- 206 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHc------CCeEEEEEeCCCCCcc------cC----------------------------
Confidence 4799999999999999999998 9999999987643210 00
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
.++.+.+.+.+++.|+++++++.+.++..++++ + .|.+.+
T Consensus 207 ------------------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~-~v~~~~-------------- 246 (446)
T TIGR01424 207 ------------------------DDMRALLARNMEGRGIRIHPQTSLTSITKTDDG-L-KVTLSH-------------- 246 (446)
T ss_pred ------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-E-EEEEcC--------------
Confidence 133445667777889999999999999765543 2 355544
Q ss_pred CceEEEcCEEEEecCCCCc
Q 006778 268 RGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (631)
|.++.+|.||+|+|..+.
T Consensus 247 -g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 247 -GEEIVADVVLFATGRSPN 264 (446)
T ss_pred -CcEeecCEEEEeeCCCcC
Confidence 568999999999997664
No 294
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.08 E-value=3.8e-05 Score=84.97 Aligned_cols=103 Identities=27% Similarity=0.332 Sum_probs=75.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~------G~~Vtlv~~~~~~l~~------------------~----------------- 211 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNY------GVDVTIVEFLDRALPN------------------E----------------- 211 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCcCCc------------------c-----------------
Confidence 4799999999999999999999 9999999987643210 0
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
-..+...+.+.+++.||+|++++.|+++..++ +.+ .|.+.. .+|+
T Consensus 212 -----------------------d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~v~~~~----~~g~------ 256 (466)
T PRK07818 212 -----------------------DAEVSKEIAKQYKKLGVKILTGTKVESIDDNG-SKV-TVTVSK----KDGK------ 256 (466)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-CeE-EEEEEe----cCCC------
Confidence 01234556777788899999999999997654 323 344321 1232
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
..++.+|.||+|+|..+.+
T Consensus 257 -~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 257 -AQELEADKVLQAIGFAPRV 275 (466)
T ss_pred -eEEEEeCEEEECcCcccCC
Confidence 1579999999999988754
No 295
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.08 E-value=2.7e-05 Score=84.23 Aligned_cols=102 Identities=26% Similarity=0.427 Sum_probs=80.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
..+|+|||+|++||.+|..|++. |++|+++|+.+.+++...
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~------G~~v~l~e~~~~~~~~~~--------------------------------- 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKR------GKKVTLIEAADRLGGQLL--------------------------------- 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc------CCeEEEEEcccccchhhh---------------------------------
Confidence 36899999999999999999999 999999999998765210
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEE-EEeCCCccccCCCcccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIG-IGTNDMGIAKDGSKKEN 265 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~g-V~~~d~g~~~~G~~~~~ 265 (631)
. ..+.+.+.+..++.||++++++.+.++....+..... +...+
T Consensus 177 -----------------------~-~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~------------ 220 (415)
T COG0446 177 -----------------------D-PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGID------------ 220 (415)
T ss_pred -----------------------h-HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeC------------
Confidence 0 2446667888888999999999999998776432211 33333
Q ss_pred ccCceEEEcCEEEEecCCCCc
Q 006778 266 FQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 266 f~~g~~i~a~~vV~A~G~~s~ 286 (631)
+..+.+|.++.+.|.++.
T Consensus 221 ---~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 221 ---GEEIKADLVIIGPGERPN 238 (415)
T ss_pred ---CcEEEeeEEEEeeccccc
Confidence 678999999999999884
No 296
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.08 E-value=4.1e-05 Score=84.65 Aligned_cols=105 Identities=23% Similarity=0.272 Sum_probs=75.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
.-.|+|||||+.|+..|..|++. |.+|+++|+.+.+... ++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~------G~~Vtlie~~~~il~~------~d--------------------------- 214 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRL------GAQVTVVEYLDRICPG------TD--------------------------- 214 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEeCCCCCCCC------CC---------------------------
Confidence 35799999999999999999999 9999999987654210 00
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
..+.+.+.+.+++.||++++++.++++..++++ + .+.+.+ ..+|+
T Consensus 215 -------------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~-v-~v~~~~---~~~g~----- 259 (466)
T PRK06115 215 -------------------------TETAKTLQKALTKQGMKFKLGSKVTGATAGADG-V-SLTLEP---AAGGA----- 259 (466)
T ss_pred -------------------------HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCe-E-EEEEEE---cCCCc-----
Confidence 123455667777889999999999999765433 2 233221 01122
Q ss_pred cCceEEEcCEEEEecCCCCch
Q 006778 267 QRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~~ 287 (631)
+.++.+|.||+|+|..+.+
T Consensus 260 --~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 260 --AETLQADYVLVAIGRRPYT 278 (466)
T ss_pred --eeEEEeCEEEEccCCcccc
Confidence 3679999999999988753
No 297
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.08 E-value=9.3e-05 Score=74.54 Aligned_cols=40 Identities=38% Similarity=0.618 Sum_probs=35.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC--CCCc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE--VGAH 151 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~--~g~~ 151 (631)
.++||+|||+|.|||.||..|+.. |.+|+|+|+..+ +|+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~a------G~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADA------GKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhc------CceEEEEcccccccccce
Confidence 478999999999999999999999 999999998754 4543
No 298
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.07 E-value=0.00011 Score=79.57 Aligned_cols=62 Identities=24% Similarity=0.222 Sum_probs=45.2
Q ss_pred cEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCC
Q 006778 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~ 284 (631)
.+.+..+.+...+...+...|.+|+++++|++|..++ +.| .|.+.+ |.++.||.||.|....
T Consensus 203 ~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~v-~v~~~~---------------g~~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 203 GLTVGMGGLSLALALAAEELGGEIRLNTPVTRIERED-GGV-TVTTED---------------GETIEADAVISAVPPS 264 (450)
T ss_dssp TEEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEEES-SEE-EEEETT---------------SSEEEESEEEE-S-HH
T ss_pred ceeecccchhHHHHHHHhhcCceeecCCcceeccccc-ccc-cccccc---------------ceEEecceeeecCchh
Confidence 3444455556666666666788999999999999988 455 477766 6789999999999854
No 299
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.07 E-value=1.5e-05 Score=86.90 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=69.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
..+|||||||.||+.+|..|.+. +.+|+|||+.+..--. + +++.+..
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~------~~~ItlI~~~~~~~~~--------~-----~l~~~~~-------------- 56 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPK------KYNITVISPRNHMLFT--------P-----LLPQTTT-------------- 56 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcC------CCeEEEEcCCCCcchh--------h-----hHHHhcc--------------
Confidence 46899999999999999988765 7999999987642110 0 0110000
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
. ......+..-+.+.++..|++++. .+|++|..++ ..| .+...+ .+... -
T Consensus 57 ----g----------------~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~Id~~~-~~v-~~~~~~----~~~~~---~ 106 (424)
T PTZ00318 57 ----G----------------TLEFRSICEPVRPALAKLPNRYLR-AVVYDVDFEE-KRV-KCGVVS----KSNNA---N 106 (424)
T ss_pred ----c----------------CCChHHhHHHHHHHhccCCeEEEE-EEEEEEEcCC-CEE-EEeccc----ccccc---c
Confidence 0 011123333455666667888775 5788887665 222 232211 00000 0
Q ss_pred cCceEEEcCEEEEecCCCC
Q 006778 267 QRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s 285 (631)
++|.++.+|++|+|+|+..
T Consensus 107 ~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 107 VNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred CCceEecCCEEEECCCccc
Confidence 1257899999999999975
No 300
>PRK07846 mycothione reductase; Reviewed
Probab=98.06 E-value=3.7e-05 Score=84.52 Aligned_cols=98 Identities=19% Similarity=0.244 Sum_probs=72.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|+|||||+.|+.+|..|++. |.+|+++|+++.+... ++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~~~ll~~------~d---------------------------- 206 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL------GVRVTVVNRSGRLLRH------LD---------------------------- 206 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCccccc------cC----------------------------
Confidence 5799999999999999999998 9999999997653210 00
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
.++.+.+.+. .+.|++++++++++++..++ +.+ .|.+.+
T Consensus 207 ------------------------~~~~~~l~~l-~~~~v~i~~~~~v~~i~~~~-~~v-~v~~~~-------------- 245 (451)
T PRK07846 207 ------------------------DDISERFTEL-ASKRWDVRLGRNVVGVSQDG-SGV-TLRLDD-------------- 245 (451)
T ss_pred ------------------------HHHHHHHHHH-HhcCeEEEeCCEEEEEEEcC-CEE-EEEECC--------------
Confidence 1122333332 34579999999999997654 333 355544
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
|.++.+|.||+|+|..+..
T Consensus 246 -g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 246 -GSTVEADVLLVATGRVPNG 264 (451)
T ss_pred -CcEeecCEEEEEECCccCc
Confidence 5789999999999988753
No 301
>PLN02507 glutathione reductase
Probab=98.06 E-value=4.1e-05 Score=85.25 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=76.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|+|||||+.|+..|..|++. |.+|+|+++.+.+... ++
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~------G~~Vtli~~~~~~l~~------~d---------------------------- 243 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGM------GATVDLFFRKELPLRG------FD---------------------------- 243 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHc------CCeEEEEEecCCcCcc------cC----------------------------
Confidence 4799999999999999999998 9999999987643210 00
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
..+.+.+.+.+++.||+++.++.|+++..+++ .+ .|.+.+
T Consensus 244 ------------------------~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~-~~-~v~~~~-------------- 283 (499)
T PLN02507 244 ------------------------DEMRAVVARNLEGRGINLHPRTNLTQLTKTEG-GI-KVITDH-------------- 283 (499)
T ss_pred ------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCC-eE-EEEECC--------------
Confidence 23355566777788999999999999976543 33 355544
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
|.++.+|.||.|.|..+..
T Consensus 284 -g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 284 -GEEFVADVVLFATGRAPNT 302 (499)
T ss_pred -CcEEEcCEEEEeecCCCCC
Confidence 5689999999999988754
No 302
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.06 E-value=4.7e-05 Score=84.01 Aligned_cols=100 Identities=23% Similarity=0.261 Sum_probs=74.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|+|||||++|+.+|..|++. |.+|+++|+.+.+... .
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~~~ll~~------~----------------------------- 209 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRL------GTKVTIVEMAPQLLPG------E----------------------------- 209 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCcCcc------c-----------------------------
Confidence 4799999999999999999998 9999999988654210 0
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
-.++.+.+.+.+++.|++++++++++++..++ +.+ .+.. + |+
T Consensus 210 -----------------------d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~-~~v-~~~~-~------g~------ 251 (458)
T PRK06912 210 -----------------------DEDIAHILREKLENDGVKIFTGAALKGLNSYK-KQA-LFEY-E------GS------ 251 (458)
T ss_pred -----------------------cHHHHHHHHHHHHHCCCEEEECCEEEEEEEcC-CEE-EEEE-C------Cc------
Confidence 02335556777788899999999999987554 222 2322 1 11
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
..++.+|.||+|+|..+.+
T Consensus 252 -~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 252 -IQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred -eEEEEeCEEEEecCCccCC
Confidence 2479999999999988754
No 303
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.04 E-value=1.2e-05 Score=87.11 Aligned_cols=40 Identities=30% Similarity=0.378 Sum_probs=34.6
Q ss_pred cccEEEECCCHHHHHHHHHHH-hhcccCCCCCeEEEEeeCCCCCCcc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLK-QLCREKNVDLSVCVVEKGAEVGAHI 152 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La-~~~~~~~~G~~V~vlEk~~~~g~~~ 152 (631)
...|+|||||||||.+|..|. +. |++|+|+||.+.+||-.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~------g~~VtlfEk~p~pgGLv 79 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHE------RVKVDIFEKLPNPYGLI 79 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhc------CCeEEEEecCCCCccEE
Confidence 457999999999999999765 56 99999999999988743
No 304
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.03 E-value=9e-06 Score=93.21 Aligned_cols=38 Identities=37% Similarity=0.612 Sum_probs=35.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~ 150 (631)
..+|+||||||+||++|..|++. |++|+|+|+.+.+|+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG 347 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGG 347 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCC
Confidence 57899999999999999999999 999999999988776
No 305
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.03 E-value=9.9e-06 Score=89.77 Aligned_cols=38 Identities=39% Similarity=0.626 Sum_probs=35.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~ 150 (631)
..+|+|||||++|+++|..|++. |++|+|+|+.+.+|+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~~~~~gG 180 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA------GHTVTVFEREDRCGG 180 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCCCc
Confidence 46999999999999999999999 999999999987775
No 306
>PTZ00058 glutathione reductase; Provisional
Probab=98.03 E-value=5.3e-05 Score=85.03 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=75.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
.-.|+|||||..|+..|..|++. |.+|+++|+++.+... ++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~------G~~Vtli~~~~~il~~------~d--------------------------- 277 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRL------GAESYIFARGNRLLRK------FD--------------------------- 277 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCcEEEEEeccccccc------CC---------------------------
Confidence 35799999999999999999999 9999999987653210 00
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
..+.+.+.+.+++.||+++.++.+.++..++++.+. +...+
T Consensus 278 -------------------------~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~------------- 318 (561)
T PTZ00058 278 -------------------------ETIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSD------------- 318 (561)
T ss_pred -------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECC-------------
Confidence 123445667777889999999999999865443342 33322
Q ss_pred cCceEEEcCEEEEecCCCCc
Q 006778 267 QRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (631)
.+.++.+|.||+|+|..+.
T Consensus 319 -~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 319 -GRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred -CCEEEECCEEEECcCCCCC
Confidence 1357999999999998765
No 307
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.03 E-value=5.1e-06 Score=91.45 Aligned_cols=43 Identities=40% Similarity=0.597 Sum_probs=39.4
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~ 153 (631)
....+|||||||+|||+||..|.+. |++|+|+|.++.+||.+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~------G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF------GFDVLVLEARDRVGGRIY 55 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc------CCceEEEeccCCcCceeE
Confidence 3467999999999999999999999 999999999999998763
No 308
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.03 E-value=2.1e-05 Score=81.62 Aligned_cols=152 Identities=20% Similarity=0.288 Sum_probs=95.2
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc---ccccccChHhHHHHhhhhhhcCCCeeeec
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI---ISGNVFEPRALNELLPQWKQEEAPIRVPV 181 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~---~~g~~i~~~~l~~l~~~~~~~~~~~~~~~ 181 (631)
+..+|+|.||-||+-|+.|+.|... .+.+++.+||.+...+|- +.|..+....+.+|. ....|
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~-----~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLV----Tl~~P----- 68 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEH-----SGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLV----TLVDP----- 68 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccc-----cCcceEEEecCCCCCcCCCcccCCccccccchhhhc----cccCC-----
Confidence 4569999999999999999999987 258899999999877652 122222222222221 11001
Q ss_pred cCcceEeec---cCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEE--EEeCCCcc
Q 006778 182 SSDKFWFLT---KDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIG--IGTNDMGI 256 (631)
Q Consensus 182 ~~~~~~~l~---~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~g--V~~~d~g~ 256 (631)
...+.|+. ....+ ..+-+.+.+.+.|.++.+++.-.|..+ -.+++|+.|++|..-+.+.+.. |++.+
T Consensus 69 -Ts~ySFLNYL~~h~RL---y~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~--- 140 (436)
T COG3486 69 -TSPYSFLNYLHEHGRL---YEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTAN--- 140 (436)
T ss_pred -CCchHHHHHHHHcchH---hhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCC---
Confidence 11111111 11110 112234467789999998888888777 6788999999773322222222 55554
Q ss_pred ccCCCccccccCceEEEcCEEEEecCCCCchhHH
Q 006778 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEK 290 (631)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~ 290 (631)
+...+|+.+|+++|..+.+-..
T Consensus 141 ------------~~~y~ar~lVlg~G~~P~IP~~ 162 (436)
T COG3486 141 ------------GTVYRARNLVLGVGTQPYIPPC 162 (436)
T ss_pred ------------CcEEEeeeEEEccCCCcCCChH
Confidence 5689999999999988766543
No 309
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.01 E-value=5e-05 Score=83.91 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=76.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.|+|||+|..|+.+|..|++. |.+|+++|+.+.+.... +
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~------g~~Vtli~~~~~~l~~~------d---------------------------- 217 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTEL------GVKVTLVSSRDRVLPGE------D---------------------------- 217 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCcCCCCC------C----------------------------
Confidence 4799999999999999999998 99999999876543210 0
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
..+...+.+.+++.||+++.++++.++..+++ .+ .|.+.+
T Consensus 218 ------------------------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~~-~v~~~~-------------- 257 (466)
T PRK07845 218 ------------------------ADAAEVLEEVFARRGMTVLKRSRAESVERTGD-GV-VVTLTD-------------- 257 (466)
T ss_pred ------------------------HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCC-EE-EEEECC--------------
Confidence 12344567777788999999999999976553 33 355544
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
|.++.+|.||+|+|..+..
T Consensus 258 -g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 258 -GRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred -CcEEEecEEEEeecCCcCC
Confidence 5689999999999988764
No 310
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=5.4e-05 Score=76.34 Aligned_cols=53 Identities=21% Similarity=0.432 Sum_probs=44.3
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC--------CCCCccccccccChHhH
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA--------EVGAHIISGNVFEPRAL 163 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~--------~~g~~~~~g~~i~~~~l 163 (631)
.-+||.+|||||.+||++|-.+++. |.+|.++|--. -+|+++.+.+||+.+-+
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~------G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLM 77 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADL------GAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLM 77 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhc------CCcEEEEeecccCCCCCccccCceeeecccccHHHH
Confidence 3479999999999999999999999 99999998321 25777788888887655
No 311
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.00 E-value=5.8e-05 Score=84.88 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHHHHH
Q 006778 214 LVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIK 293 (631)
Q Consensus 214 l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~l~~ 293 (631)
...+|.....+.|++|+.++.|.+|+.++ ++++||++.+. |.. ...+.+|.||+|.|+..+ .+|..
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~~-~ra~GV~~~~~-----~~~------~~~~~ak~VIlaAGai~S--P~LLl 261 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINFEG-NRATGVEFKKG-----GRK------EHTEANKEVILSAGAINS--PQLLQ 261 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEecC-CeEEEEEEEeC-----CcE------EEEEEeeeEEEccCCCCC--HHHHH
Confidence 33444443335679999999999999974 67889987541 111 134589999999998553 45554
Q ss_pred HcCCC
Q 006778 294 NFKLR 298 (631)
Q Consensus 294 ~~g~~ 298 (631)
..|+-
T Consensus 262 ~SGIG 266 (532)
T TIGR01810 262 LSGIG 266 (532)
T ss_pred hcCCC
Confidence 55554
No 312
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.00 E-value=5.7e-05 Score=83.65 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=75.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.|+|||||+.|+.+|..++.... .|.+|+|+|+++.+... ++
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~---~G~~Vtli~~~~~il~~------~d---------------------------- 230 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKP---RGGKVTLCYRNNMILRG------FD---------------------------- 230 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhcc---CCCeEEEEecCCccccc------cC----------------------------
Confidence 479999999999999976553210 18999999988754320 00
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
.++.+.+.+.+++.|+++++++.++++..++++. ..|.+.+
T Consensus 231 ------------------------~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~-------------- 271 (486)
T TIGR01423 231 ------------------------STLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFES-------------- 271 (486)
T ss_pred ------------------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcC--------------
Confidence 2345567777788999999999999998665442 3455544
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
|.++.+|.||.|+|..+..
T Consensus 272 -g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 272 -GKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred -CCEEEcCEEEEeeCCCcCc
Confidence 5689999999999988754
No 313
>PRK14694 putative mercuric reductase; Provisional
Probab=98.00 E-value=6.9e-05 Score=82.93 Aligned_cols=97 Identities=21% Similarity=0.234 Sum_probs=73.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.|+|||+|+.|+.+|..|++. |.+|+++++...+.. .
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~------g~~Vtlv~~~~~l~~-------~----------------------------- 216 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARL------GSRVTVLARSRVLSQ-------E----------------------------- 216 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEECCCCCCC-------C-----------------------------
Confidence 4799999999999999999999 999999986421110 0
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
...+.+.+.+.+++.||+++.++.+.++..++ +.+ .+.+.+
T Consensus 217 -----------------------~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~-~~~-~v~~~~-------------- 257 (468)
T PRK14694 217 -----------------------DPAVGEAIEAAFRREGIEVLKQTQASEVDYNG-REF-ILETNA-------------- 257 (468)
T ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEE-EEEECC--------------
Confidence 02335557777788899999999999987654 322 344433
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
.++.+|.||+|+|..+..
T Consensus 258 --~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 258 --GTLRAEQLLVATGRTPNT 275 (468)
T ss_pred --CEEEeCEEEEccCCCCCc
Confidence 369999999999998854
No 314
>PLN02546 glutathione reductase
Probab=97.99 E-value=8.9e-05 Score=83.28 Aligned_cols=100 Identities=21% Similarity=0.224 Sum_probs=75.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|+|||||..|+..|..|++. |.+|+|+|+.+.+... +
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~------g~~Vtlv~~~~~il~~------~----------------------------- 291 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGL------KSDVHVFIRQKKVLRG------F----------------------------- 291 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCeEEEEEeccccccc------c-----------------------------
Confidence 4899999999999999999998 9999999987654210 0
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
-..+...+.+.+++.||+++.++.+.++..++++.+ .|.+.+
T Consensus 292 -----------------------d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~-------------- 333 (558)
T PLN02546 292 -----------------------DEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNK-------------- 333 (558)
T ss_pred -----------------------CHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECC--------------
Confidence 023345567777889999999999999976554533 354433
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
+....+|.||.|.|..+..
T Consensus 334 -g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 334 -GTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred -eEEEecCEEEEeeccccCC
Confidence 3444589999999998864
No 315
>PRK14727 putative mercuric reductase; Provisional
Probab=97.98 E-value=8.2e-05 Score=82.52 Aligned_cols=97 Identities=19% Similarity=0.166 Sum_probs=73.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.|+|||+|+.|+..|..|++. |.+|+++++...+.. +
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~------G~~Vtlv~~~~~l~~-------~----------------------------- 226 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARL------GSRVTILARSTLLFR-------E----------------------------- 226 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCCCc-------c-----------------------------
Confidence 4799999999999999999998 999999987421110 0
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
-..+.+.+.+.+++.||+++++++++++..+++ .+ .|.+.+
T Consensus 227 -----------------------d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-~~-~v~~~~-------------- 267 (479)
T PRK14727 227 -----------------------DPLLGETLTACFEKEGIEVLNNTQASLVEHDDN-GF-VLTTGH-------------- 267 (479)
T ss_pred -----------------------hHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCC-EE-EEEEcC--------------
Confidence 013345677777889999999999999976553 22 344433
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
.++.+|.||+|+|.++..
T Consensus 268 --g~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 268 --GELRAEKLLISTGRHANT 285 (479)
T ss_pred --CeEEeCEEEEccCCCCCc
Confidence 358999999999998854
No 316
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.97 E-value=5e-05 Score=77.06 Aligned_cols=39 Identities=31% Similarity=0.496 Sum_probs=36.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~ 152 (631)
..+|.|||+|++||+||+.|++. .+|+++|....+|+|.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-------hdVTLfEA~~rlGGha 46 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-------HDVTLFEADRRLGGHA 46 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-------cceEEEeccccccCcc
Confidence 46899999999999999999995 8999999999999876
No 317
>PLN02785 Protein HOTHEAD
Probab=97.96 E-value=0.0001 Score=83.27 Aligned_cols=68 Identities=16% Similarity=0.305 Sum_probs=46.1
Q ss_pred HHHHHHhcCcEEecCceEEEEEEcCC---CcEEEEEeCCCccccCCCccccccCceEE-----EcCEEEEecCCCCchhH
Q 006778 218 LGGKAEELGVEIYPGFAASEILYDAD---NKVIGIGTNDMGIAKDGSKKENFQRGVEL-----RGRITLLAEGCRGSLSE 289 (631)
Q Consensus 218 L~~~a~~~Gv~i~~g~~v~~i~~~~~---g~v~gV~~~d~g~~~~G~~~~~f~~g~~i-----~a~~vV~A~G~~s~~~~ 289 (631)
|...+...+++|+.++.|++|+++++ ++++||++.+ .+|.. .++ .++-||+|.|+.. ..
T Consensus 226 l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~----~~g~~-------~~~~~~~~~~~eVILsAGai~--sP 292 (587)
T PLN02785 226 LLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKD----ENGNQ-------HQAFLSNNKGSEIILSAGAIG--SP 292 (587)
T ss_pred HHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEE----CCCce-------EEEEeecccCceEEecccccC--CH
Confidence 33445556799999999999999863 2688998865 33431 122 2478999999877 35
Q ss_pred HHHHHcCCC
Q 006778 290 KLIKNFKLR 298 (631)
Q Consensus 290 ~l~~~~g~~ 298 (631)
+|....|+-
T Consensus 293 ~lL~~SGIG 301 (587)
T PLN02785 293 QMLLLSGIG 301 (587)
T ss_pred HHHHHcCCC
Confidence 555555554
No 318
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.95 E-value=7.2e-05 Score=82.93 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=76.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.|+|||+|..|+.+|..|++. |.+|+|+|+++.+... .
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~----------------------------- 222 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRL------GAEVTILEALPAFLAA------A----------------------------- 222 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEeCCCccCCc------C-----------------------------
Confidence 4799999999999999999998 9999999997654210 0
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
+ ..+...+.+.+++.|++++.++.|+++..+++ .+ .|.+.+ .+|+
T Consensus 223 ----------------------d-~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~-~v-~v~~~~----~~g~------ 267 (475)
T PRK06327 223 ----------------------D-EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGK-GV-SVAYTD----ADGE------ 267 (475)
T ss_pred ----------------------C-HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCC-EE-EEEEEe----CCCc------
Confidence 0 23345566677778999999999999976653 33 354433 1232
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
..++.+|.||+|+|..+..
T Consensus 268 -~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 268 -AQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred -eeEEEcCEEEEccCCccCC
Confidence 1579999999999988764
No 319
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.93 E-value=9.4e-05 Score=81.21 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=75.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.|+|||+|+.|+..|..|++. |.+|+|+|+++.+... +
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------------------~----------------- 197 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANF------GSKVTILEAASLFLPR------------------E----------------- 197 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCC------------------c-----------------
Confidence 3799999999999999999998 9999999987643210 0
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
-..+.+.+.+.+++.||++++++.+.++..++ +.+ .|.+.+
T Consensus 198 -----------------------~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~~v-~v~~~~-------------- 238 (441)
T PRK08010 198 -----------------------DRDIADNIATILRDQGVDIILNAHVERISHHE-NQV-QVHSEH-------------- 238 (441)
T ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEE-EEEEcC--------------
Confidence 01334556777888999999999999997654 333 344433
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
.++.+|.||+|+|.++..
T Consensus 239 --g~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 239 --AQLAVDALLIASGRQPAT 256 (441)
T ss_pred --CeEEeCEEEEeecCCcCC
Confidence 358899999999998864
No 320
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.92 E-value=8.6e-05 Score=83.12 Aligned_cols=98 Identities=30% Similarity=0.365 Sum_probs=72.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
.+|+|||||+.|+.+|..|++. +.+|+|+|+.+.+..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~------g~~Vtli~~~~~l~~------------------------------------- 389 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGI------VRHVTVLEFADELKA------------------------------------- 389 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhc------CcEEEEEEeCCcCCh-------------------------------------
Confidence 4899999999999999999998 999999997654311
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHh-cCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
...+.+.+++ .||+|++++.++++..++ +.+.+|.+.+. .+|+
T Consensus 390 ---------------------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~-~~v~~v~~~~~---~~~~----- 433 (515)
T TIGR03140 390 ---------------------------DKVLQDKLKSLPNVDILTSAQTTEIVGDG-DKVTGIRYQDR---NSGE----- 433 (515)
T ss_pred ---------------------------hHHHHHHHhcCCCCEEEECCeeEEEEcCC-CEEEEEEEEEC---CCCc-----
Confidence 0113444444 599999999999987553 55666776541 1222
Q ss_pred cCceEEEcCEEEEecCCCCc
Q 006778 267 QRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (631)
+.++.+|.||+|.|..+.
T Consensus 434 --~~~i~~D~vi~a~G~~Pn 451 (515)
T TIGR03140 434 --EKQLDLDGVFVQIGLVPN 451 (515)
T ss_pred --EEEEEcCEEEEEeCCcCC
Confidence 357999999999997763
No 321
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.92 E-value=0.00011 Score=81.27 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=75.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... ++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~------G~~Vtlv~~~~~il~~------~d---------------------------- 214 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRL------GSEVDVVEMFDQVIPA------AD---------------------------- 214 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCCEEEEecCCCCCCc------CC----------------------------
Confidence 4799999999999999999999 9999999998754320 00
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
..+.+.+.+.+++. ++++.++.++++..++++ + .|.+.+ .+|+
T Consensus 215 ------------------------~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~-~-~v~~~~----~~~~------ 257 (471)
T PRK06467 215 ------------------------KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG-I-YVTMEG----KKAP------ 257 (471)
T ss_pred ------------------------HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE-E-EEEEEe----CCCc------
Confidence 12344566666667 999999999999766533 3 344432 1121
Q ss_pred CceEEEcCEEEEecCCCCchh
Q 006778 268 RGVELRGRITLLAEGCRGSLS 288 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~~ 288 (631)
+.++.+|.||+|+|..+.+.
T Consensus 258 -~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 258 -AEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred -ceEEEeCEEEEeecccccCC
Confidence 25799999999999988653
No 322
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.90 E-value=2.2e-05 Score=91.03 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=34.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCC
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG 149 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g 149 (631)
....|+|||||||||++|+.|++. |++|+|+|+.+..|
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~------Gh~Vtv~E~~~i~g 419 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS------GHNVTAIDGLKITL 419 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC------CCeEEEEccccccc
Confidence 457899999999999999999999 99999999876544
No 323
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.89 E-value=1.6e-05 Score=86.40 Aligned_cols=40 Identities=40% Similarity=0.552 Sum_probs=36.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~ 153 (631)
..|.|||||||||++|..|++. |+.|+|+|+.+..|+-..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~------G~~Vtv~e~~~~~GGll~ 163 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA------GHDVTVFERVALDGGLLL 163 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC------CCeEEEeCCcCCCceeEE
Confidence 6899999999999999999999 999999999999887443
No 324
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.89 E-value=0.00016 Score=82.46 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=74.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|+|||||..|+..|..|++. |.+|+++|+.+.+... ++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~------G~eVTLIe~~~~ll~~------~d---------------------------- 352 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTAL------GSEVVSFEYSPQLLPL------LD---------------------------- 352 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhC------CCeEEEEeccCccccc------CC----------------------------
Confidence 4799999999999999999998 9999999998754320 00
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHH-HhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKA-EELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a-~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
.++.+.+.+.. ++.||+|+.++.|.++..++++..+.|.+.+.....++.....+
T Consensus 353 ------------------------~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~ 408 (659)
T PTZ00153 353 ------------------------ADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNM 408 (659)
T ss_pred ------------------------HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEecccccccccccccc
Confidence 12234444443 46899999999999997665333223443220000000000001
Q ss_pred cCceEEEcCEEEEecCCCCc
Q 006778 267 QRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (631)
....++.+|.||+|+|..+.
T Consensus 409 ~~~~~i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 409 NDIKETYVDSCLVATGRKPN 428 (659)
T ss_pred ccceEEEcCEEEEEECcccC
Confidence 11247999999999998765
No 325
>PRK13984 putative oxidoreductase; Provisional
Probab=97.89 E-value=2.5e-05 Score=89.25 Aligned_cols=39 Identities=44% Similarity=0.551 Sum_probs=35.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCC
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~ 150 (631)
...+|+|||+|+||+++|..|++. |++|+|+|+.+..|+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG 320 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGG 320 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCc
Confidence 356899999999999999999999 999999999987765
No 326
>PLN02268 probable polyamine oxidase
Probab=97.88 E-value=1.3e-05 Score=87.83 Aligned_cols=39 Identities=28% Similarity=0.572 Sum_probs=36.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~ 153 (631)
+|+|||||++||+||..|.+. |++|+|+|+++.+||++.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~------g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA------SFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCCCCCceee
Confidence 799999999999999999998 999999999999999764
No 327
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.88 E-value=1.4e-05 Score=85.01 Aligned_cols=39 Identities=44% Similarity=0.625 Sum_probs=36.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~ 152 (631)
+||+|||||++||++|..|++. |.+|+|+|+++.+|+.+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~------G~~V~viEk~~~iGG~~ 40 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL------NKRVLVVEKRNHIGGNC 40 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCCCCCce
Confidence 6999999999999999999998 99999999998888754
No 328
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.87 E-value=9.4e-05 Score=80.73 Aligned_cols=99 Identities=27% Similarity=0.436 Sum_probs=72.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccC--------CCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeee
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREK--------NVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV 179 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~--------~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~ 179 (631)
..|+|||||++|+..|..|++..... .++.+|+|+|+++.+... ++
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~------~~-------------------- 227 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS------FD-------------------- 227 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc------CC--------------------
Confidence 37999999999999999988632110 137899999987654220 00
Q ss_pred eccCcceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccC
Q 006778 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (631)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~ 259 (631)
..+.+.+.+.+++.||+++.+++++++..+ .|.+.|
T Consensus 228 --------------------------------~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~------~v~~~~------ 263 (424)
T PTZ00318 228 --------------------------------QALRKYGQRRLRRLGVDIRTKTAVKEVLDK------EVVLKD------ 263 (424)
T ss_pred --------------------------------HHHHHHHHHHHHHCCCEEEeCCeEEEEeCC------EEEECC------
Confidence 123455677778899999999999988532 255665
Q ss_pred CCccccccCceEEEcCEEEEecCCCC
Q 006778 260 GSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 260 G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
|.++.+|.+|.|.|..+
T Consensus 264 ---------g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 264 ---------GEVIPTGLVVWSTGVGP 280 (424)
T ss_pred ---------CCEEEccEEEEccCCCC
Confidence 67899999999999765
No 329
>PRK13748 putative mercuric reductase; Provisional
Probab=97.86 E-value=0.00014 Score=82.45 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=73.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.|+|||||+.|+..|..|++. |.+|+|+++...+.. .+
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~------g~~Vtli~~~~~l~~-------~d---------------------------- 309 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARL------GSKVTILARSTLFFR-------ED---------------------------- 309 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCEEEEEecCccccc-------cC----------------------------
Confidence 4799999999999999999999 999999997431100 00
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
..+.+.+.+.+++.||+++.++.+.++..++ +.+ .+.+.+
T Consensus 310 ------------------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-~~~-~v~~~~-------------- 349 (561)
T PRK13748 310 ------------------------PAIGEAVTAAFRAEGIEVLEHTQASQVAHVD-GEF-VLTTGH-------------- 349 (561)
T ss_pred ------------------------HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEE-EEEecC--------------
Confidence 1234556777788899999999999997654 333 344443
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
.++.+|.||+|+|..+..
T Consensus 350 --~~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 350 --GELRADKLLVATGRAPNT 367 (561)
T ss_pred --CeEEeCEEEEccCCCcCC
Confidence 369999999999998864
No 330
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.81 E-value=0.00025 Score=78.26 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=75.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
.-+|+|||+|+.|+..|..|++. |.+|+++|+++.+... +
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~---------------------------- 208 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRL------GVKVTVFERGDRILPL------E---------------------------- 208 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCcCcc------h----------------------------
Confidence 35799999999999999999999 9999999998754320 0
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
-.++.+.+.+.+++. +++++++++.++..+++..+ .++..+ |+
T Consensus 209 ------------------------d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v-~~~~~~------~~----- 251 (460)
T PRK06292 209 ------------------------DPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKV-EELEKG------GK----- 251 (460)
T ss_pred ------------------------hHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceE-EEEEcC------Cc-----
Confidence 013345566677777 99999999999976543222 232222 21
Q ss_pred cCceEEEcCEEEEecCCCCchh
Q 006778 267 QRGVELRGRITLLAEGCRGSLS 288 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~~~ 288 (631)
+.++.+|.||.|+|..+.+.
T Consensus 252 --~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 252 --TETIEADYVLVATGRRPNTD 271 (460)
T ss_pred --eEEEEeCEEEEccCCccCCC
Confidence 36799999999999987653
No 331
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.81 E-value=0.00019 Score=78.99 Aligned_cols=97 Identities=21% Similarity=0.278 Sum_probs=71.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.|+|||||+.|+..|..|++. |.+|+++|+.+.+... ++
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~------G~~Vtli~~~~~ll~~------~d---------------------------- 209 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSAL------GTRVTIVNRSTKLLRH------LD---------------------------- 209 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCcEEEEEccCccccc------cC----------------------------
Confidence 5799999999999999999998 9999999987643210 00
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
..+.+.+.+. .+.|++++.++.|+++..+++ .+ .|.+.+
T Consensus 210 ------------------------~~~~~~l~~~-~~~gI~i~~~~~V~~i~~~~~-~v-~v~~~~-------------- 248 (452)
T TIGR03452 210 ------------------------EDISDRFTEI-AKKKWDIRLGRNVTAVEQDGD-GV-TLTLDD-------------- 248 (452)
T ss_pred ------------------------HHHHHHHHHH-HhcCCEEEeCCEEEEEEEcCC-eE-EEEEcC--------------
Confidence 1112233332 245899999999999986553 33 355544
Q ss_pred CceEEEcCEEEEecCCCCc
Q 006778 268 RGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (631)
|.++.+|.||+|+|..+.
T Consensus 249 -g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 249 -GSTVTADVLLVATGRVPN 266 (452)
T ss_pred -CCEEEcCEEEEeeccCcC
Confidence 567999999999998875
No 332
>PRK10262 thioredoxin reductase; Provisional
Probab=97.80 E-value=0.0002 Score=75.02 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=75.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
.-.|+|||+|..|+.+|..|++. +.+|+++++.+.+...
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~------~~~Vtlv~~~~~~~~~----------------------------------- 184 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNI------ASEVHLIHRRDGFRAE----------------------------------- 184 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhh------CCEEEEEEECCccCCC-----------------------------------
Confidence 35799999999999999999999 9999999997643110
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
..+.+.+.+.+++.||++++++.++++..++ +.+.+|++.+. .++..
T Consensus 185 -------------------------~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~-~~~~~v~~~~~---~~~~~---- 231 (321)
T PRK10262 185 -------------------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDT---QNSDN---- 231 (321)
T ss_pred -------------------------HHHHHHHHhhccCCCeEEEeCCEEEEEEcCC-ccEEEEEEEEc---CCCCe----
Confidence 1123445666677899999999999997554 34556666531 11111
Q ss_pred cCceEEEcCEEEEecCCCCc
Q 006778 267 QRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (631)
..++.+|.||.|.|..+.
T Consensus 232 --~~~i~~D~vv~a~G~~p~ 249 (321)
T PRK10262 232 --IESLDVAGLFVAIGHSPN 249 (321)
T ss_pred --EEEEECCEEEEEeCCccC
Confidence 357999999999997663
No 333
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.80 E-value=0.00017 Score=80.71 Aligned_cols=98 Identities=27% Similarity=0.310 Sum_probs=73.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|+|||||..|+.+|..|++. +.+|+|+++++.+..
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~------~~~Vtlv~~~~~l~~------------------------------------- 388 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGI------VKHVTVLEFAPELKA------------------------------------- 388 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCEEEEEEECccccc-------------------------------------
Confidence 4899999999999999999998 999999998764321
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHh-cCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
...|.+.+.+ .||++++++.++++..++ +.+.+|.+.+ ..+|+
T Consensus 389 ---------------------------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~-g~v~~v~~~~---~~~g~----- 432 (517)
T PRK15317 389 ---------------------------DQVLQDKLRSLPNVTIITNAQTTEVTGDG-DKVTGLTYKD---RTTGE----- 432 (517)
T ss_pred ---------------------------cHHHHHHHhcCCCcEEEECcEEEEEEcCC-CcEEEEEEEE---CCCCc-----
Confidence 0113333443 589999999999997653 5676677654 12232
Q ss_pred cCceEEEcCEEEEecCCCCc
Q 006778 267 QRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (631)
..++.+|.|++|.|..+.
T Consensus 433 --~~~i~~D~v~~~~G~~p~ 450 (517)
T PRK15317 433 --EHHLELEGVFVQIGLVPN 450 (517)
T ss_pred --EEEEEcCEEEEeECCccC
Confidence 257999999999997763
No 334
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.80 E-value=0.00022 Score=73.54 Aligned_cols=97 Identities=23% Similarity=0.311 Sum_probs=70.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
.+|+|||+|+.|+.+|..|++. +.+|+++++.+.+..
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~------~~~V~~v~~~~~~~~------------------------------------- 178 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRI------AKKVTLVHRRDKFRA------------------------------------- 178 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhh------cCEEEEEEeCcccCc-------------------------------------
Confidence 5899999999999999999998 899999998653210
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
...+.+.+++. |+++++++.++++..++ .+..|.+.+ ..+|+
T Consensus 179 ---------------------------~~~~~~~l~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~---~~~g~----- 221 (300)
T TIGR01292 179 ---------------------------EKILLDRLRKNPNIEFLWNSTVKEIVGDN--KVEGVKIKN---TVTGE----- 221 (300)
T ss_pred ---------------------------CHHHHHHHHhCCCeEEEeccEEEEEEccC--cEEEEEEEe---cCCCc-----
Confidence 01133444555 99999999999987543 454565432 01222
Q ss_pred cCceEEEcCEEEEecCCCCc
Q 006778 267 QRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (631)
+.++.+|.||.|+|..+.
T Consensus 222 --~~~i~~D~vi~a~G~~~~ 239 (300)
T TIGR01292 222 --EEELKVDGVFIAIGHEPN 239 (300)
T ss_pred --eEEEEccEEEEeeCCCCC
Confidence 478999999999997664
No 335
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.79 E-value=0.00042 Score=69.10 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhc-ccCCCCCeEEEEeeCCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLC-REKNVDLSVCVVEKGAE 147 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~-~~~~~G~~V~vlEk~~~ 147 (631)
..+|+|||+|..||++|+.+.+.. ++..|-++|+|++-...
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~ 44 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT 44 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence 468999999999999998888742 22346789999986553
No 336
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.79 E-value=7.6e-05 Score=79.37 Aligned_cols=109 Identities=26% Similarity=0.246 Sum_probs=72.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
...|||||||.+|+.+|..|.+.. ++.+|++|||+...-... ++....
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~----~~~~itLVd~~~~hl~~p-------------lL~eva--------------- 50 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL----PDVEITLVDRRDYHLFTP-------------LLYEVA--------------- 50 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC----CCCcEEEEeCCCccccch-------------hhhhhh---------------
Confidence 457999999999999999999972 158999999987532110 000000
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcC-cEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (631)
...++...+.--+.+.+.+.+ |+++.+ +|++|..++. .|.+.+
T Consensus 51 -------------------~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~~ID~~~k----~V~~~~------------ 94 (405)
T COG1252 51 -------------------TGTLSESEIAIPLRALLRKSGNVQFVQG-EVTDIDRDAK----KVTLAD------------ 94 (405)
T ss_pred -------------------cCCCChhheeccHHHHhcccCceEEEEE-EEEEEcccCC----EEEeCC------------
Confidence 111222233333555555454 888754 6889887762 366665
Q ss_pred ccCceEEEcCEEEEecCCCCc
Q 006778 266 FQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 266 f~~g~~i~a~~vV~A~G~~s~ 286 (631)
+..+.+|.+|+|.|+...
T Consensus 95 ---~~~i~YD~LVvalGs~~~ 112 (405)
T COG1252 95 ---LGEISYDYLVVALGSETN 112 (405)
T ss_pred ---CccccccEEEEecCCcCC
Confidence 468999999999998764
No 337
>PRK12831 putative oxidoreductase; Provisional
Probab=97.78 E-value=0.00019 Score=79.16 Aligned_cols=112 Identities=25% Similarity=0.253 Sum_probs=76.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
.-.|+|||||..|+-+|..|++. |.+|+|+++.....
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~------Ga~Vtlv~r~~~~~------------------------------------- 317 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRL------GAEVHIVYRRSEEE------------------------------------- 317 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc------CCEEEEEeecCccc-------------------------------------
Confidence 35899999999999999999999 99999999764210
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCc---cccCCCcc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSKK 263 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g---~~~~G~~~ 263 (631)
++. . .. ..+.+++.||+|++++.++++..+++|+|.+|.+..+. .+.+|...
T Consensus 318 ----------m~a----------~----~~-e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~ 372 (464)
T PRK12831 318 ----------LPA----------R----VE-EVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRR 372 (464)
T ss_pred ----------CCC----------C----HH-HHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCcc
Confidence 000 0 00 11335667999999999999987766778777664221 12334322
Q ss_pred ccccCc--eEEEcCEEEEecCCCCc
Q 006778 264 ENFQRG--VELRGRITLLAEGCRGS 286 (631)
Q Consensus 264 ~~f~~g--~~i~a~~vV~A~G~~s~ 286 (631)
....+| .++.+|.||.|.|..+.
T Consensus 373 ~~~~~g~~~~i~~D~Vi~AiG~~p~ 397 (464)
T PRK12831 373 PVEIEGSEFVLEVDTVIMSLGTSPN 397 (464)
T ss_pred ceecCCceEEEECCEEEECCCCCCC
Confidence 111112 46999999999997653
No 338
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.77 E-value=0.00024 Score=79.09 Aligned_cols=97 Identities=24% Similarity=0.198 Sum_probs=73.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|+|||||+.|+..|..|++. |.+|+|+++.. +... ++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~~-~l~~------~d---------------------------- 221 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNEL------GFDVTVAVRSI-PLRG------FD---------------------------- 221 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCc-cccc------CC----------------------------
Confidence 3799999999999999999999 99999998642 2110 00
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
..+.+.+.+.+++.||+++.++.+.++...+ +.+ .|.+.+
T Consensus 222 ------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~-~v~~~~-------------- 261 (499)
T PTZ00052 222 ------------------------RQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DKI-KVLFSD-------------- 261 (499)
T ss_pred ------------------------HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-CeE-EEEECC--------------
Confidence 1234556777788899999999998887654 333 455554
Q ss_pred CceEEEcCEEEEecCCCCc
Q 006778 268 RGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (631)
|.++.+|.||+|.|..+.
T Consensus 262 -g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 262 -GTTELFDTVLYATGRKPD 279 (499)
T ss_pred -CCEEEcCEEEEeeCCCCC
Confidence 567899999999998764
No 339
>PLN02568 polyamine oxidase
Probab=97.73 E-value=3.4e-05 Score=86.35 Aligned_cols=47 Identities=38% Similarity=0.518 Sum_probs=38.1
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~ 152 (631)
++..||+|||||++||++|..|++... ...|.+|+|+|++..+|+.+
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~-~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSA-ANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhccc-ccCCceEEEEeCCCCcCCeE
Confidence 345799999999999999999998710 01139999999999998865
No 340
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.72 E-value=0.00032 Score=77.82 Aligned_cols=101 Identities=25% Similarity=0.271 Sum_probs=73.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.|+|||||+.|+.+|..|++. |.+|+|+++. .+... ++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~-~~l~~------~d---------------------------- 219 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGI------GLDVTVMVRS-ILLRG------FD---------------------------- 219 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHh------CCcEEEEEec-ccccc------cC----------------------------
Confidence 3699999999999999999999 9999999974 22110 00
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
..+.+.+.+.+++.||+|++++.+.++...+ +.+ .|.+.+ |+.
T Consensus 220 ------------------------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~------~~~----- 262 (484)
T TIGR01438 220 ------------------------QDCANKVGEHMEEHGVKFKRQFVPIKVEQIE-AKV-KVTFTD------STN----- 262 (484)
T ss_pred ------------------------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-CeE-EEEEec------CCc-----
Confidence 2334556777788899999999998887654 333 355443 110
Q ss_pred CceEEEcCEEEEecCCCCch
Q 006778 268 RGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~~ 287 (631)
+.++.+|.||.|.|..+.+
T Consensus 263 -~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 263 -GIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred -ceEEEeCEEEEEecCCcCC
Confidence 2479999999999987753
No 341
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.71 E-value=4.1e-05 Score=76.98 Aligned_cols=40 Identities=38% Similarity=0.507 Sum_probs=37.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~ 153 (631)
+|++|||+|.+|+..|..|+++ |.+|+|+||++.+||.+-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~------gk~VLIvekR~HIGGNaY 41 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL------GKRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc------CCEEEEEeccccCCCccc
Confidence 7999999999999999999999 999999999999998763
No 342
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=3.7e-05 Score=82.73 Aligned_cols=40 Identities=38% Similarity=0.526 Sum_probs=37.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcccc
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS 154 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~ 154 (631)
.|+|+|||+|||+||+.|+.+ |++|+|+|.++.+||.+.+
T Consensus 2 rVai~GaG~AgL~~a~~La~~------g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA------GYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC------CCceEEEeccCccCceeee
Confidence 599999999999999999999 9999999999999987644
No 343
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.59 E-value=6.6e-05 Score=79.22 Aligned_cols=40 Identities=33% Similarity=0.672 Sum_probs=37.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~ 151 (631)
+.-+++|||||+||++||+.|++. |++|.++||.+.+|++
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~------G~~v~LVEKepsiGGr 162 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADM------GFKVYLVEKEPSIGGR 162 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHc------CCeEEEEecCCccccc
Confidence 456899999999999999999999 9999999999999985
No 344
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.56 E-value=0.00061 Score=72.74 Aligned_cols=98 Identities=21% Similarity=0.308 Sum_probs=67.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
..|+|||+|++|+.+|..|++...+.+...+|+|+ ..+.+...
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~------------------------------------ 188 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG------------------------------------ 188 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc------------------------------------
Confidence 47999999999999999998643222222578888 33221110
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~ 267 (631)
+ ...+...+.+.+++.||+++.++.++++. + + .|.+.+
T Consensus 189 ---------~-------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~-~---~v~~~~-------------- 226 (364)
T TIGR03169 189 ---------F-------------PAKVRRLVLRLLARRGIEVHEGAPVTRGP--D-G---ALILAD-------------- 226 (364)
T ss_pred ---------C-------------CHHHHHHHHHHHHHCCCEEEeCCeeEEEc--C-C---eEEeCC--------------
Confidence 0 01234556677788999999999998874 2 2 355554
Q ss_pred CceEEEcCEEEEecCCCC
Q 006778 268 RGVELRGRITLLAEGCRG 285 (631)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s 285 (631)
|.++.+|.||.|+|..+
T Consensus 227 -g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 227 -GRTLPADAILWATGARA 243 (364)
T ss_pred -CCEEecCEEEEccCCCh
Confidence 67899999999999765
No 345
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00024 Score=81.24 Aligned_cols=39 Identities=41% Similarity=0.621 Sum_probs=36.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~ 151 (631)
-..|.|||+|||||+||-+|-+. |+.|+|+||...+|+-
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~------gh~v~vyer~dr~ggl 1823 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKA------GHTVTVYERSDRVGGL 1823 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhc------CcEEEEEEecCCcCce
Confidence 47899999999999999999999 9999999999999873
No 346
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.42 E-value=0.00017 Score=75.22 Aligned_cols=45 Identities=36% Similarity=0.535 Sum_probs=38.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcccc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS 154 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~ 154 (631)
+..+|+|||||++||++|+.|+++ .|...|+|+|..+++|+.+.+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~----~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARL----GPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhc----CCCceEEEEecCCcccceeee
Confidence 457899999999999999999998 455667789999999987765
No 347
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.42 E-value=0.00099 Score=70.85 Aligned_cols=108 Identities=21% Similarity=0.234 Sum_probs=69.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCe-EEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~-V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
-.|+|||+|..|+.+|..|++. |.+ |+|+++......
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~------g~~~Vtvi~~~~~~~~------------------------------------ 210 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLL------GAEKVYLAYRRTINEA------------------------------------ 210 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeecchhhC------------------------------------
Confidence 4799999999999999999888 887 999997642100
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCcccc---CCCcc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAK---DGSKK 263 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~---~G~~~ 263 (631)
+ . ...+.+.+++.|+++++++.++++..+ +.+..|.+.+...+. .+.+.
T Consensus 211 -----------~----------~-----~~~~~~~l~~~gi~i~~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~ 262 (352)
T PRK12770 211 -----------P----------A-----GKYEIERLIARGVEFLELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPR 262 (352)
T ss_pred -----------C----------C-----CHHHHHHHHHcCCEEeeccCceeeecC--CcEeEEEEEEEEecCcCcccCcC
Confidence 0 0 011233456789999999999998643 345455543211100 00000
Q ss_pred --ccccCceEEEcCEEEEecCCCC
Q 006778 264 --ENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 264 --~~f~~g~~i~a~~vV~A~G~~s 285 (631)
..-..+.++.+|.||.|.|..+
T Consensus 263 ~~~~~~~~~~i~~D~vi~a~G~~p 286 (352)
T PRK12770 263 PVPIPGSEFVLEADTVVFAIGEIP 286 (352)
T ss_pred ceecCCCeEEEECCEEEECcccCC
Confidence 0001146899999999999776
No 348
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.42 E-value=0.0011 Score=73.02 Aligned_cols=110 Identities=26% Similarity=0.256 Sum_probs=71.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCC-eEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~-~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (631)
.-.|+|||||..|+.+|..|++. |. +|+++++.....-
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~------G~~~Vtlv~~~~~~~~----------------------------------- 311 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRL------GAESVTIVYRRGREEM----------------------------------- 311 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCCeEEEeeecCcccC-----------------------------------
Confidence 35799999999999999999998 88 8999998642100
Q ss_pred eEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCC---ccccCCCc
Q 006778 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM---GIAKDGSK 262 (631)
Q Consensus 186 ~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~---g~~~~G~~ 262 (631)
+. .....+.+++.||++++++.++++..++ +.+.+|.+.+. ..+.+|..
T Consensus 312 ------------~~---------------~~~~~~~~~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~ 363 (457)
T PRK11749 312 ------------PA---------------SEEEVEHAKEEGVEFEWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRR 363 (457)
T ss_pred ------------CC---------------CHHHHHHHHHCCCEEEecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCc
Confidence 00 0012345567899999999999987655 33344544321 01122321
Q ss_pred ccc-ccCceEEEcCEEEEecCCCC
Q 006778 263 KEN-FQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 263 ~~~-f~~g~~i~a~~vV~A~G~~s 285 (631)
... -..+.++.+|.||.|.|..+
T Consensus 364 ~~~~~g~~~~i~~D~vi~a~G~~p 387 (457)
T PRK11749 364 RVPIEGSEFTLPADLVIKAIGQTP 387 (457)
T ss_pred ccCCCCceEEEECCEEEECccCCC
Confidence 000 01146799999999999765
No 349
>PLN02529 lysine-specific histone demethylase 1
Probab=97.40 E-value=0.00017 Score=82.73 Aligned_cols=41 Identities=39% Similarity=0.542 Sum_probs=37.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~ 152 (631)
...||+|||||++||+||..|++. |++|+|+|+++.+|+..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~------g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSF------GFKVVVLEGRNRPGGRV 199 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHc------CCcEEEEecCccCcCce
Confidence 457999999999999999999999 99999999998887754
No 350
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.40 E-value=0.0012 Score=77.48 Aligned_cols=110 Identities=21% Similarity=0.272 Sum_probs=74.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCe-EEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~-V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
-.|||||||..|+-+|..|.+. |.+ |+|++++....
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~------Ga~~Vtlv~r~~~~~------------------------------------- 607 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRL------GAERVTIVYRRSEEE------------------------------------- 607 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHc------CCCeEEEeeecCccc-------------------------------------
Confidence 4799999999999999999998 887 99999865210
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCc---cccCCCcc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSKK 263 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g---~~~~G~~~ 263 (631)
+|. .... .+.+++.||++++++.++++..+++|++.+|.+..+. .+.+|...
T Consensus 608 ----------~~~----------~~~e-----~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~ 662 (752)
T PRK12778 608 ----------MPA----------RLEE-----VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRR 662 (752)
T ss_pred ----------CCC----------CHHH-----HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCC
Confidence 000 0001 1345677999999999999987766778777764211 11233321
Q ss_pred ccccC--ceEEEcCEEEEecCCCC
Q 006778 264 ENFQR--GVELRGRITLLAEGCRG 285 (631)
Q Consensus 264 ~~f~~--g~~i~a~~vV~A~G~~s 285 (631)
.-..+ ..++.+|.||.|.|..+
T Consensus 663 ~~~~~g~~~~i~~D~Vi~A~G~~p 686 (752)
T PRK12778 663 PVAIPGSTFTVDVDLVIVSVGVSP 686 (752)
T ss_pred ceecCCCeEEEECCEEEECcCCCC
Confidence 11111 24799999999999664
No 351
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.35 E-value=0.00021 Score=82.52 Aligned_cols=40 Identities=43% Similarity=0.599 Sum_probs=37.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~ 152 (631)
..+|+|||||++||++|+.|++. |++|+|+|+...+|+.+
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~------g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSM------GFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC------CCcEEEEeccccCCCcc
Confidence 57899999999999999999998 99999999999888764
No 352
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.33 E-value=0.002 Score=71.27 Aligned_cols=111 Identities=23% Similarity=0.279 Sum_probs=74.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCC-eEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~-~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (631)
...|+|||+|..|+.+|..+.+. |. +|+|+++++...-
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~------Ga~~Vtvv~r~~~~~~----------------------------------- 320 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRL------GAASVTCAYRRDEANM----------------------------------- 320 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCCeEEEEEecCcccC-----------------------------------
Confidence 35799999999999999999988 85 7999998753210
Q ss_pred eEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCC---ccccCCCc
Q 006778 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM---GIAKDGSK 262 (631)
Q Consensus 186 ~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~---g~~~~G~~ 262 (631)
+. .. ...+.+++.||++++++.++++..+++|.+.+|++... ..+.+|..
T Consensus 321 ------------~~----------~~-----~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~ 373 (467)
T TIGR01318 321 ------------PG----------SR-----REVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRR 373 (467)
T ss_pred ------------CC----------CH-----HHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCc
Confidence 00 00 01234567899999999999998766677776665321 11233432
Q ss_pred ccccc--CceEEEcCEEEEecCCCC
Q 006778 263 KENFQ--RGVELRGRITLLAEGCRG 285 (631)
Q Consensus 263 ~~~f~--~g~~i~a~~vV~A~G~~s 285 (631)
..... ...++.+|.||.|.|..+
T Consensus 374 ~~~~~~g~~~~i~~D~Vi~a~G~~p 398 (467)
T TIGR01318 374 RPVPVAGSEFVLPADVVIMAFGFQP 398 (467)
T ss_pred cceecCCceEEEECCEEEECCcCCC
Confidence 11111 135799999999999665
No 353
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.27 E-value=0.00075 Score=76.33 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCchhHH
Q 006778 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEK 290 (631)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~~~~ 290 (631)
...+.+.|.+++++.||+|+.++.+++++.+ +|+|+||...+ .++|+. ..+.|+.||+|||+.+.+-
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~---~~~g~~-------~~i~AkaVILATGG~~~~~-- 184 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYC---LETGEI-------HRFRAKAVVLATGGYGRIY-- 184 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEE---cCCCcE-------EEEEeCeEEECCCCccccC--
Confidence 3568899999999999999999999999976 58899987643 123432 5789999999999998632
Q ss_pred HHHHcCCCcccccCCcceeeEEEEEEeecCC
Q 006778 291 LIKNFKLREKSHAQHQTYALGIKEVWEIDEG 321 (631)
Q Consensus 291 l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 321 (631)
... ...+...|.|+.+.++....
T Consensus 185 -----~~~---~~~~~~tGdG~~mA~~aGA~ 207 (565)
T TIGR01816 185 -----FST---TNAHTLTGDGTGMVTRAGLP 207 (565)
T ss_pred -----CCc---CCCCCCccHHHHHHHHcCCc
Confidence 111 23344567766655555544
No 354
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.25 E-value=0.0093 Score=64.54 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=45.6
Q ss_pred cEEEe---HHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEec
Q 006778 206 NYVIS---LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAE 281 (631)
Q Consensus 206 ~~~v~---~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~ 281 (631)
.|+.. .++|.+.+.+.+.-.|..+..++.+.+|..+++|++.+|... |.+++|+.||+..
T Consensus 223 PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~----------------ge~v~~k~vI~dp 285 (438)
T PF00996_consen 223 PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSE----------------GEVVKAKKVIGDP 285 (438)
T ss_dssp SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEET----------------TEEEEESEEEEEG
T ss_pred CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecC----------------CEEEEcCEEEECC
Confidence 45544 368888888777778999999999999999888888888763 6899999999543
No 355
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.22 E-value=0.00042 Score=73.57 Aligned_cols=42 Identities=38% Similarity=0.531 Sum_probs=36.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~ 153 (631)
...|||||||.|||+||.+|-+. ...+|+|+|..+++||.+.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~-----gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLEN-----GFIDVLILEASDRIGGRIH 62 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHh-----CCceEEEEEeccccCceEe
Confidence 45899999999999999999966 1678999999999998764
No 356
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.0011 Score=68.24 Aligned_cols=40 Identities=33% Similarity=0.312 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCc
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~ 151 (631)
..|.|||+||||+.+|..|.+. .++++|.|+||.+.+.+-
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~----~~~~~Vdi~Ek~PvPFGL 60 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKR----HPNAHVDIFEKLPVPFGL 60 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhc----CCCCeeEeeecCCcccce
Confidence 4799999999999999998874 247999999999987763
No 357
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.13 E-value=0.0038 Score=70.62 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~ 147 (631)
.-+|+|||||..|+.+|..|++. |.+|+++++++.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~------g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRY------ASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHcc------CCEEEEEEeCCc
Confidence 35799999999999999999998 999999998763
No 358
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.07 E-value=0.01 Score=63.22 Aligned_cols=80 Identities=13% Similarity=0.074 Sum_probs=58.0
Q ss_pred eHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCc---
Q 006778 210 SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS--- 286 (631)
Q Consensus 210 ~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~--- 286 (631)
.-..+...|...+++.||+|+++++|.+| ++ +. ..|.+.. .+..++||.||+|+|+.+.
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~-~~-~~v~~~~--------------~~~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG-GT-LRFETPD--------------GQSTIEADAVVLALGGASWSQL 145 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC-Cc-EEEEECC--------------CceEEecCEEEEcCCCcccccc
Confidence 34788899999999999999999999998 22 22 3566542 0246999999999998652
Q ss_pred ----hhHHHHHHcCCCcccccCCcce
Q 006778 287 ----LSEKLIKNFKLREKSHAQHQTY 308 (631)
Q Consensus 287 ----~~~~l~~~~g~~~~~~~~~~~~ 308 (631)
-.-.+++++|+.. ....|...
T Consensus 146 Gs~g~gy~la~~lGh~i-~~~~PaL~ 170 (376)
T TIGR03862 146 GSDGAWQQVLDQRGVSV-APFAPANC 170 (376)
T ss_pred CCCcHHHHHHHHCCCcc-cCCcCeec
Confidence 2346778888886 34444433
No 359
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.05 E-value=0.005 Score=70.83 Aligned_cols=111 Identities=24% Similarity=0.318 Sum_probs=74.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCC-eEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~-~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (631)
.-.|+|||+|..|+-+|..+.++ |. +|+++++......
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~------Ga~~Vt~v~rr~~~~~----------------------------------- 489 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRL------NAASVTCAYRRDEVSM----------------------------------- 489 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc------CCCeEEEeeecCcccC-----------------------------------
Confidence 35799999999999999888888 85 7999998653211
Q ss_pred eEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCC---ccccCCCc
Q 006778 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM---GIAKDGSK 262 (631)
Q Consensus 186 ~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~---g~~~~G~~ 262 (631)
|. ...+ ...+++.||++++++.++++..+++|+|.+|.+..+ ..+.+|..
T Consensus 490 ------------~~----------~~~e-----~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~ 542 (639)
T PRK12809 490 ------------PG----------SRKE-----VVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRR 542 (639)
T ss_pred ------------CC----------CHHH-----HHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCc
Confidence 00 0011 123566799999999999998776677877654321 12234432
Q ss_pred cccccCc--eEEEcCEEEEecCCCC
Q 006778 263 KENFQRG--VELRGRITLLAEGCRG 285 (631)
Q Consensus 263 ~~~f~~g--~~i~a~~vV~A~G~~s 285 (631)
.....+| .++.+|.||+|.|..+
T Consensus 543 ~~~~~~g~~~~i~aD~Vi~AiG~~p 567 (639)
T PRK12809 543 RPRPVAGSEFELPADVLIMAFGFQA 567 (639)
T ss_pred cceecCCceEEEECCEEEECcCCCC
Confidence 2222222 5789999999999654
No 360
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.99 E-value=0.00062 Score=76.46 Aligned_cols=37 Identities=51% Similarity=0.701 Sum_probs=33.8
Q ss_pred cCccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 104 ~~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
+.++||+||||+|.+|..+|..|++. |.+|+|||++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~------g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDA------GLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCC------CCeEEEEeCCC
Confidence 34679999999999999999999976 99999999985
No 361
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.99 E-value=0.0058 Score=70.41 Aligned_cols=110 Identities=19% Similarity=0.234 Sum_probs=68.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCC-eEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~-~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (631)
.-.|||||||..|+.+|..|.+. |. +|+|+++....-
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~------Ga~~Vtlv~r~~~~~------------------------------------ 360 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRL------GAESVTILYRRTREE------------------------------------ 360 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCCeEEEeeecCccc------------------------------------
Confidence 35799999999999999999998 86 699999765210
Q ss_pred eEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcE--EEEEeCCCccccCCCcc
Q 006778 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKV--IGIGTNDMGIAKDGSKK 263 (631)
Q Consensus 186 ~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v--~gV~~~d~g~~~~G~~~ 263 (631)
+|. ....+ +.+.+.||+|++++.++++..++ +.+ ..+.+.+...+.+|...
T Consensus 361 -----------mpa----------~~~ei-----~~a~~eGV~i~~~~~~~~i~~~~-~~~~v~~~~~~~~~~d~~G~~~ 413 (652)
T PRK12814 361 -----------MPA----------NRAEI-----EEALAEGVSLRELAAPVSIERSE-GGLELTAIKMQQGEPDESGRRR 413 (652)
T ss_pred -----------CCC----------CHHHH-----HHHHHcCCcEEeccCcEEEEecC-CeEEEEEEEEEecccCCCCCCc
Confidence 000 00111 22335699999999999987655 332 22323221122334322
Q ss_pred ccccCc--eEEEcCEEEEecCCCC
Q 006778 264 ENFQRG--VELRGRITLLAEGCRG 285 (631)
Q Consensus 264 ~~f~~g--~~i~a~~vV~A~G~~s 285 (631)
..+.+| .++.+|.||+|.|..+
T Consensus 414 ~~~~~g~~~~i~~D~VI~AiG~~p 437 (652)
T PRK12814 414 PVPVEGSEFTLQADTVISAIGQQV 437 (652)
T ss_pred ceecCCceEEEECCEEEECCCCcC
Confidence 212122 4699999999999543
No 362
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.98 E-value=0.0088 Score=63.14 Aligned_cols=143 Identities=16% Similarity=0.179 Sum_probs=71.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc---ccccccChHhHHHHhhhhhhcCCCeeeecc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI---ISGNVFEPRALNELLPQWKQEEAPIRVPVS 182 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~---~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~ 182 (631)
....|+|||||.++...+..|.+. .+..+|.++=|+...-..- .....+.|..++.+...-.
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~----~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~----------- 253 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRR----GPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPD----------- 253 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-----TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-H-----------
T ss_pred CCCeEEEECCcHhHHHHHHHHHhC----CCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCH-----------
Confidence 457899999999999999999997 2236899999887432111 1113444443322211000
Q ss_pred CcceEeeccCCcccCCCCCCCCCcEEEeHHHH---HHHHHH-HHH-hcCcEEecCceEEEEEEcCCCcEEEEEeCCCccc
Q 006778 183 SDKFWFLTKDRAFSLPSPFSNRGNYVISLSQL---VRWLGG-KAE-ELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (631)
Q Consensus 183 ~~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l---~~~L~~-~a~-~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~ 257 (631)
.....++...... + .-.|+...+ .+.|.+ .+. +..+.|+.++.|+++..+++|.+ .+.+.+ .
T Consensus 254 ~~R~~~l~~~~~~-------n--y~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l~~~~---~ 320 (341)
T PF13434_consen 254 EERRELLREQRHT-------N--YGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RLTLRH---R 320 (341)
T ss_dssp HHHHHHHHHTGGG-------T--SSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EEEEEE---T
T ss_pred HHHHHHHHHhHhh-------c--CCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EEEEEE---C
Confidence 0000011100000 0 112333332 222222 222 22488999999999999886554 355544 1
Q ss_pred cCCCccccccCceEEEcCEEEEecCC
Q 006778 258 KDGSKKENFQRGVELRGRITLLAEGC 283 (631)
Q Consensus 258 ~~G~~~~~f~~g~~i~a~~vV~A~G~ 283 (631)
..|+ ..++.+|.||+|||-
T Consensus 321 ~~~~-------~~~~~~D~VilATGy 339 (341)
T PF13434_consen 321 QTGE-------EETLEVDAVILATGY 339 (341)
T ss_dssp TT---------EEEEEESEEEE---E
T ss_pred CCCC-------eEEEecCEEEEcCCc
Confidence 2222 378999999999994
No 363
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.96 E-value=0.0074 Score=72.80 Aligned_cols=104 Identities=19% Similarity=0.286 Sum_probs=76.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCC-eEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~-~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
-.|+|||+|+.|+.+|..|++. |. .|+|+|..+.+.
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~------G~~vV~vv~~~~~~~------------------------------------- 354 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAA------GIAVVAIIDARADVS------------------------------------- 354 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCceEEEEccCcchh-------------------------------------
Confidence 5799999999999999999998 85 578998764321
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
..+.+.+++.||+|+.++.++++..+ +.+.+|++.. .+|+
T Consensus 355 -----------------------------~~l~~~L~~~GV~i~~~~~v~~i~g~--~~v~~V~l~~----~~g~----- 394 (985)
T TIGR01372 355 -----------------------------PEARAEARELGIEVLTGHVVAATEGG--KRVSGVAVAR----NGGA----- 394 (985)
T ss_pred -----------------------------HHHHHHHHHcCCEEEcCCeEEEEecC--CcEEEEEEEe----cCCc-----
Confidence 01345567789999999999988643 3455666542 1122
Q ss_pred cCceEEEcCEEEEecCCCCchhHHHHHHcCCC
Q 006778 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~ 298 (631)
+.++.+|.|+++.|..+. .+|....+..
T Consensus 395 --~~~i~~D~V~va~G~~Pn--t~L~~~lg~~ 422 (985)
T TIGR01372 395 --GQRLEADALAVSGGWTPV--VHLFSQRGGK 422 (985)
T ss_pred --eEEEECCEEEEcCCcCch--hHHHHhcCCC
Confidence 578999999999999884 4566666644
No 364
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.96 E-value=0.021 Score=61.77 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=35.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~ 152 (631)
.++=|||+|+|+|+||..|-|-+ +-||-+|.|+|+.+..|+..
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa--~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDA--KMPGENIHILEELDVPGGSL 45 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccC--CCCccceEEEeCCCCCCCcc
Confidence 46789999999999999998852 35789999999998777643
No 365
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.91 E-value=0.0075 Score=72.54 Aligned_cols=112 Identities=23% Similarity=0.313 Sum_probs=74.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCe-EEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~-V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (631)
.-+|+|||||..|+-+|..+.++ |.+ |+++.+.....
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rl------Ga~~Vtiv~rr~~~e------------------------------------ 608 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRL------GAPTVRCVYRRSEAE------------------------------------ 608 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeecCccc------------------------------------
Confidence 45799999999999999999998 874 77777653210
Q ss_pred eEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCc---cccCCCc
Q 006778 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSK 262 (631)
Q Consensus 186 ~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g---~~~~G~~ 262 (631)
+|. . .. -.+.+++.||++++++.+.++..+++|+|.+|.+..+. .+.+|..
T Consensus 609 -----------m~a----------~----~~-e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~ 662 (1006)
T PRK12775 609 -----------APA----------R----IE-EIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRR 662 (1006)
T ss_pred -----------CCC----------C----HH-HHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCc
Confidence 000 0 00 12345678999999999999987767888887764321 1223322
Q ss_pred cccccC-ceEEEcCEEEEecCCCCc
Q 006778 263 KENFQR-GVELRGRITLLAEGCRGS 286 (631)
Q Consensus 263 ~~~f~~-g~~i~a~~vV~A~G~~s~ 286 (631)
.+.-.. ..++.+|.||+|.|..+.
T Consensus 663 ~~~~~g~~~~i~~D~Vi~AiG~~p~ 687 (1006)
T PRK12775 663 KPMPTGEFKDLECDTVIYALGTKAN 687 (1006)
T ss_pred cccCCCceEEEEcCEEEECCCcCCC
Confidence 111111 146999999999998765
No 366
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.90 E-value=0.0077 Score=71.86 Aligned_cols=111 Identities=20% Similarity=0.226 Sum_probs=72.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-+|||||||..|+-+|..+.+. |.+|+++.++....
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~------Ga~Vtlv~rr~~~~-------------------------------------- 483 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRL------GGNVTIVYRRTKSE-------------------------------------- 483 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEecCccc--------------------------------------
Confidence 5799999999999999999999 99999998764210
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCC-CcEEEEEeCCCc---cccCCCcc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDAD-NKVIGIGTNDMG---IAKDGSKK 263 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~-g~v~gV~~~d~g---~~~~G~~~ 263 (631)
+|. .... + +.+.+.||++++++.++++..+++ +.|.+|.+..+. .+.+|...
T Consensus 484 ---------mpa----------~~~e----~-~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~ 539 (944)
T PRK12779 484 ---------MPA----------RVEE----L-HHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRS 539 (944)
T ss_pred ---------ccc----------cHHH----H-HHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCcee
Confidence 000 0011 1 224457999999999999976643 356666543211 12333221
Q ss_pred cccc-CceEEEcCEEEEecCCCCc
Q 006778 264 ENFQ-RGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 264 ~~f~-~g~~i~a~~vV~A~G~~s~ 286 (631)
...+ ...++.||.||+|.|..+.
T Consensus 540 ~~~~G~e~~i~aD~VI~AiG~~p~ 563 (944)
T PRK12779 540 PKPTGEIERVPVDLVIMALGNTAN 563 (944)
T ss_pred eecCCceEEEECCEEEEcCCcCCC
Confidence 1111 1257999999999998864
No 367
>PLN02976 amine oxidase
Probab=96.89 E-value=0.0011 Score=79.67 Aligned_cols=41 Identities=39% Similarity=0.680 Sum_probs=37.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCcc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~ 152 (631)
..+||+|||||++|+++|+.|++. |++|+|||+++.+|+.+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~------G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ------GFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC------CCcEEEEeeccCCCCce
Confidence 358999999999999999999998 99999999998888764
No 368
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=96.82 E-value=0.00052 Score=42.08 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=20.8
Q ss_pred EEEecCCccccccccccCCCCCcc
Q 006778 593 LQINAQNCLHCKACDIKDPKQNIK 616 (631)
Q Consensus 593 ~~~~~~~c~~c~tC~i~~p~~~i~ 616 (631)
.+||++.|+.||.|...||++.|+
T Consensus 1 ~~id~~~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 1 PVIDPDKCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp EEEETTTSSS-THHHHHSTTSSEE
T ss_pred CEEchHHCCCcchhhhhcccccCC
Confidence 368999999999999999999885
No 369
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.81 E-value=0.0049 Score=64.16 Aligned_cols=114 Identities=25% Similarity=0.336 Sum_probs=81.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEE-EEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVC-VVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~-vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (631)
...|-|||.|..|..+|+.|++... +.|.+|. |+|..... ..++
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r--~~g~eV~QvF~Ek~nm---------------~kiL------------------ 391 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYR--NEGVEVHQVFEEKYNM---------------EKIL------------------ 391 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhh--ccCcEEEEeecccCCh---------------hhhh------------------
Confidence 3579999999999999999998621 2244444 33322111 1111
Q ss_pred eEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccc
Q 006778 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (631)
Q Consensus 186 ~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (631)
..-|.+|-.+..++.||.++.+..|.++.... +.+ .+.+.|
T Consensus 392 -------------------------Peyls~wt~ekir~~GV~V~pna~v~sv~~~~-~nl-~lkL~d------------ 432 (659)
T KOG1346|consen 392 -------------------------PEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC-KNL-VLKLSD------------ 432 (659)
T ss_pred -------------------------HHHHHHHHHHHHHhcCceeccchhhhhhhhhc-cce-EEEecC------------
Confidence 12346667788888999999999999887765 333 377777
Q ss_pred ccCceEEEcCEEEEecCCCCchhHHHHHHcCCCc
Q 006778 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLRE 299 (631)
Q Consensus 266 f~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~~ 299 (631)
|++++.|+||.|.|..+ +.+|++..|+..
T Consensus 433 ---G~~l~tD~vVvavG~eP--N~ela~~sgLei 461 (659)
T KOG1346|consen 433 ---GSELRTDLVVVAVGEEP--NSELAEASGLEI 461 (659)
T ss_pred ---CCeeeeeeEEEEecCCC--chhhccccccee
Confidence 89999999999999988 567777777775
No 370
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=96.79 E-value=0.00051 Score=58.24 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=37.4
Q ss_pred CCCcccccCC--ccccce--EEEcC-CCCeEEEEecCCccccccccccCCCCCcceeCCCC
Q 006778 567 PKIPELVNLP--EYAGPE--YVPDE-KNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPEG 622 (631)
Q Consensus 567 ~~~~~~~~~~--~~~~p~--~~~~~-~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~p~g 622 (631)
+..|..|..+ +.+||. +..++ +| .+.||.+.|+.||.|..+||+++|.|..-.|
T Consensus 6 ~~~C~hC~~ppC~~~CP~~Ai~~~~~~G--~V~id~~~CigC~~C~~aCP~~ai~~~~~~~ 64 (98)
T PF13247_consen 6 PVQCRHCEDPPCVEACPTGAIYKDPEDG--IVVIDEDKCIGCGYCVEACPYGAIRFDPDTG 64 (98)
T ss_dssp EEC---BSS-HHHHHCTTTSEEEETTTS---EEE-TTTCCTHHHHHHH-TTS-EEEETTTT
T ss_pred CCcCcCcCCCchhhhCCccceEEEcCCC--eEEechhhccCchhhhhhhccCcceeecccc
Confidence 4567777766 789999 55554 66 5789999999999999999999999987654
No 371
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.67 E-value=0.0047 Score=62.30 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=31.7
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
..++.|+|||||.+|++.|..+.+.. +.=+|.|+|...
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl----~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKL----GSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhc----CCCceEEecchh
Confidence 35799999999999999999998863 334899999765
No 372
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.65 E-value=0.011 Score=65.62 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=71.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCC-CeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G-~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
-.|+|||||..|+-+|..+.+. | ..|+++|..+....... ..+.++.|
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~------ga~~V~vv~~~~~~~~~~~---------~~~~~~~~---------------- 332 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRH------GAASVHQFEIMPKPPEARA---------KDNPWPEW---------------- 332 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEEecCCChhhcc---------cccCCCcc----------------
Confidence 5799999999999998888777 5 47999998764321000 00000000
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEE-ecCceEEEEEEcCCCcEEEEEeCCC--ccccCCCcc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEI-YPGFAASEILYDADNKVIGIGTNDM--GIAKDGSKK 263 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i-~~g~~v~~i~~~~~g~v~gV~~~d~--g~~~~G~~~ 263 (631)
....++...+.+..+..|+++ ++++.+.++..++++.|.+|.+..+ ..+.+|...
T Consensus 333 ----------------------~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~ 390 (485)
T TIGR01317 333 ----------------------PRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQ 390 (485)
T ss_pred ----------------------chhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCcc
Confidence 000112223344444457654 5688888887665577877765322 112345422
Q ss_pred ccccCc--eEEEcCEEEEecCCC
Q 006778 264 ENFQRG--VELRGRITLLAEGCR 284 (631)
Q Consensus 264 ~~f~~g--~~i~a~~vV~A~G~~ 284 (631)
....+| .++.+|.||.|.|..
T Consensus 391 p~~~~g~~~~i~~D~Vi~AiG~~ 413 (485)
T TIGR01317 391 FVEIPGSEEVFEADLVLLAMGFV 413 (485)
T ss_pred ceecCCceEEEECCEEEEccCcC
Confidence 222222 479999999999954
No 373
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.60 E-value=0.013 Score=61.51 Aligned_cols=103 Identities=22% Similarity=0.371 Sum_probs=69.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccC--------CCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeee
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREK--------NVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV 179 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~--------~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~ 179 (631)
..+|||||||.|...|..|+....++ ...++|+++|..+.+- +.+.
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL------------------~mFd-------- 272 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL------------------NMFD-------- 272 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH------------------HHHH--------
Confidence 57999999999999999998542221 1256788888765321 0110
Q ss_pred eccCcceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccC
Q 006778 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (631)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~ 259 (631)
..+.++-.++..+.|+++..++.|.++..+. +.+.. +|
T Consensus 273 --------------------------------krl~~yae~~f~~~~I~~~~~t~Vk~V~~~~------I~~~~----~~ 310 (491)
T KOG2495|consen 273 --------------------------------KRLVEYAENQFVRDGIDLDTGTMVKKVTEKT------IHAKT----KD 310 (491)
T ss_pred --------------------------------HHHHHHHHHHhhhccceeecccEEEeecCcE------EEEEc----CC
Confidence 2345555666667899999999998875332 33333 35
Q ss_pred CCccccccCceEEEcCEEEEecCCCC
Q 006778 260 GSKKENFQRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 260 G~~~~~f~~g~~i~a~~vV~A~G~~s 285 (631)
|+. .+|..-.+|.|+|..+
T Consensus 311 g~~-------~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 311 GEI-------EEIPYGLLVWATGNGP 329 (491)
T ss_pred Cce-------eeecceEEEecCCCCC
Confidence 654 6888999999999765
No 374
>PRK13984 putative oxidoreductase; Provisional
Probab=96.48 E-value=0.022 Score=65.27 Aligned_cols=63 Identities=24% Similarity=0.428 Sum_probs=40.6
Q ss_pred HhcCcEEecCceEEEEEEcCCCcEEEEEeCCCc--cccCCCccccccC--ceEEEcCEEEEecCCCCc
Q 006778 223 EELGVEIYPGFAASEILYDADNKVIGIGTNDMG--IAKDGSKKENFQR--GVELRGRITLLAEGCRGS 286 (631)
Q Consensus 223 ~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g--~~~~G~~~~~f~~--g~~i~a~~vV~A~G~~s~ 286 (631)
.+.||+++++..+.++..+ +++|.+|.+.++. .+.+|.....+.+ +.++.+|.||.|.|..+.
T Consensus 473 ~~~GV~i~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~ 539 (604)
T PRK13984 473 LEEGVVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPD 539 (604)
T ss_pred HHcCCEEEeCCCCEEEEcc-CCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCC
Confidence 4579999999999888654 4677777654211 1233432221111 357999999999997753
No 375
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.027 Score=58.39 Aligned_cols=96 Identities=26% Similarity=0.340 Sum_probs=74.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
..||+|||||-+.+-.|+.|++. +.+|+++-|++.+.+
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~------a~~Vtlv~r~~~~ra------------------------------------ 180 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKI------AKKVTLVHRRDEFRA------------------------------------ 180 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHh------cCeEEEEecCcccCc------------------------------------
Confidence 34999999999999999999999 889999999876543
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (631)
..++.+.+++. ++++++++.+.++.-++ |.+|++.+. + |+
T Consensus 181 ----------------------------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~---v~~v~l~~~---~-~~---- 221 (305)
T COG0492 181 ----------------------------EEILVERLKKNVKIEVLTNTVVKEILGDD---VEGVVLKNV---K-GE---- 221 (305)
T ss_pred ----------------------------CHHHHHHHHhcCCeEEEeCCceeEEecCc---cceEEEEec---C-Cc----
Confidence 23355666655 79999999999987654 556776651 1 33
Q ss_pred ccCceEEEcCEEEEecCCCCc
Q 006778 266 FQRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 266 f~~g~~i~a~~vV~A~G~~s~ 286 (631)
..++..+.|..+.|..+.
T Consensus 222 ---~~~~~~~gvf~~iG~~p~ 239 (305)
T COG0492 222 ---EKELPVDGVFIAIGHLPN 239 (305)
T ss_pred ---eEEEEeceEEEecCCCCc
Confidence 257888999999997664
No 376
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=96.34 E-value=0.0018 Score=60.60 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=40.1
Q ss_pred CCCCcccccCCccccce----EEEcCC---C---CeEEEEecCCccccccccccCCCCCcc
Q 006778 566 DPKIPELVNLPEYAGPE----YVPDEK---N---QLKLQINAQNCLHCKACDIKDPKQNIK 616 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~----~~~~~~---~---~~~~~~~~~~c~~c~tC~i~~p~~~i~ 616 (631)
+.+.|+.|.+-..+||+ +.+.++ | ....+||+..|+.||-|--.||+..|.
T Consensus 53 ~~~~CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~ 113 (172)
T COG1143 53 DRDKCIGCGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALV 113 (172)
T ss_pred cccCCcchhHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhhhc
Confidence 34449999988999999 333322 2 236889999999999999999998884
No 377
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=96.33 E-value=0.0018 Score=49.52 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=31.0
Q ss_pred CCCCcccccCCccccce-----EEEcCCCCeEEEEecCCccccccccccCCC-CCcc
Q 006778 566 DPKIPELVNLPEYAGPE-----YVPDEKNQLKLQINAQNCLHCKACDIKDPK-QNIK 616 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~-----~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~-~~i~ 616 (631)
|++.|..|..=..+||. +..+++. ++.++++.|+.||.|...||. +.|+
T Consensus 4 d~~~Ci~Cg~C~~~Cp~~~~~~i~~~~~~--~~~v~~~~C~GCg~C~~~CPv~~AI~ 58 (59)
T PF14697_consen 4 DEDKCIGCGKCVRACPDGAIDAIEVDEGK--KVPVNPDKCIGCGLCVKVCPVKDAIT 58 (59)
T ss_dssp -TTT----SCCCHHCCCCS-S-ECCTTTT--SSECE-TT--S-SCCCCCSSSTTSEE
T ss_pred CcccccChhhHHhHcCccceeeEEecCCe--eEEeccccCcCcCcccccCCCccCCC
Confidence 88999999888899996 3233332 467889999999999999996 9885
No 378
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.33 E-value=0.017 Score=61.76 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=37.0
Q ss_pred HHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCC
Q 006778 222 AEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 222 a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~ 284 (631)
.++.|+++++++.|+.+..... .|.+.+ |.+++.+.+|+|||+.
T Consensus 137 Yke~gIe~~~~t~v~~~D~~~K----~l~~~~---------------Ge~~kys~LilATGs~ 180 (478)
T KOG1336|consen 137 YKEKGIELILGTSVVKADLASK----TLVLGN---------------GETLKYSKLIIATGSS 180 (478)
T ss_pred HhhcCceEEEcceeEEeecccc----EEEeCC---------------CceeecceEEEeecCc
Confidence 3567999999999999988763 466666 7899999999999983
No 379
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.32 E-value=0.0034 Score=69.44 Aligned_cols=39 Identities=36% Similarity=0.582 Sum_probs=34.9
Q ss_pred CccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCC
Q 006778 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV 148 (631)
Q Consensus 105 ~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~ 148 (631)
..+||.||||||.||+.+|.+|++. |..+|+|||++...
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn-----~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSEN-----PNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccC-----CCceEEEEecCCCC
Confidence 3479999999999999999999996 68999999998754
No 380
>COG1146 Ferredoxin [Energy production and conversion]
Probab=96.27 E-value=0.0043 Score=48.95 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=42.1
Q ss_pred CCCCcccccCCccccce--EEEcCC-CCeEEEEecCCccccccccccCCCCCcceeCC
Q 006778 566 DPKIPELVNLPEYAGPE--YVPDEK-NQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 620 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~--~~~~~~-~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~p 620 (631)
|++.|..|..-+..||. +.+.+. ++..+.+|.+.|+.||.|...||.+.|+....
T Consensus 6 d~~~C~~c~~C~~~CP~~~~~~~~~~~~~~~~~~~e~C~~C~~C~~~CP~~aI~~~~~ 63 (68)
T COG1146 6 DYDKCIGCGICVEVCPAGVFDLGEDEGGKPVVARPEECIDCGLCELACPVGAIKVDIL 63 (68)
T ss_pred CchhcCCCChheeccChhhEEeccccCcceeEeccccCccchhhhhhCCcceEEEecc
Confidence 67778876555789999 444332 34468899999999999999999998874433
No 381
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=96.21 E-value=0.0047 Score=62.92 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=46.3
Q ss_pred CCceEe-cCCCCcccccCC--ccccce---EEEcCCCCeEEEEecCCccccccccccCCCCCcceeCC
Q 006778 559 PAHLRL-RDPKIPELVNLP--EYAGPE---YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 620 (631)
Q Consensus 559 ~~h~~~-~~~~~~~~~~~~--~~~~p~---~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~p 620 (631)
..|+++ -.++.|..|..+ +-+||+ +..+++| .+.||.+.|+.|+.|...||++.|.|...
T Consensus 81 ~~~~~~~~~~~~C~hC~~p~Cv~aCP~~gA~~~~~~G--~V~id~dkCigC~~Cv~aCP~~a~~~~~~ 146 (283)
T TIGR01582 81 SDGLEWLIRKDGCMHCREPGCLKACPAPGAIIQYQNG--IVDFDHSKCIGCGYCIVGCPFNIPRYDKV 146 (283)
T ss_pred CCCceEEECCccCCCCCCccccCCCCcCCeEEEcCCC--cEEEeHHHCCcchHHHhhCCCCCcEEcCC
Confidence 345553 256779888875 778996 5555565 57889999999999999999999998653
No 382
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.019 Score=58.29 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=33.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~ 150 (631)
..-|.|||||.||..||++++++ |+.|.++|-++.-+.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~------Gv~V~L~EMRp~k~T 40 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKR------GVPVILYEMRPVKGT 40 (439)
T ss_pred CCceEEEcccccccHHHHHHHHc------CCcEEEEEcccccCC
Confidence 34689999999999999999999 999999998875443
No 383
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.09 E-value=0.0011 Score=40.49 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=20.9
Q ss_pred EEEecCCccccccccccCCCCCc
Q 006778 593 LQINAQNCLHCKACDIKDPKQNI 615 (631)
Q Consensus 593 ~~~~~~~c~~c~tC~i~~p~~~i 615 (631)
.+||.+.|+.||.|-..||.+.|
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred cEEChhhCcChhHHHHhcchhcC
Confidence 47899999999999999998876
No 384
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.04 E-value=0.0023 Score=37.83 Aligned_cols=19 Identities=32% Similarity=0.969 Sum_probs=17.9
Q ss_pred EEEecCCccccccccccCC
Q 006778 593 LQINAQNCLHCKACDIKDP 611 (631)
Q Consensus 593 ~~~~~~~c~~c~tC~i~~p 611 (631)
+.||.+.|+.|++|..+||
T Consensus 3 ~~iD~~rCiGC~~C~~AC~ 21 (22)
T PF12797_consen 3 MVIDLERCIGCGACEVACP 21 (22)
T ss_pred eEEccccccCchhHHHhhC
Confidence 6799999999999999998
No 385
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=95.98 E-value=0.0018 Score=48.09 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=23.3
Q ss_pred cCCCCcccccCCccccce---EEEcCCCCeEEEEecCCccccccccccCC
Q 006778 565 RDPKIPELVNLPEYAGPE---YVPDEKNQLKLQINAQNCLHCKACDIKDP 611 (631)
Q Consensus 565 ~~~~~~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~c~~c~tC~i~~p 611 (631)
.|++.|..|..=+.+||. .... .....+.+++++|++||.|...||
T Consensus 4 id~~~C~~C~~C~~~CP~~~~~~~~-~~~~~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 4 IDEDKCIGCGRCVKVCPADNAIAID-DGEKKVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp --TT------TTGGG-TT-----EE-E-SSSEEE-TTT--TTSHHHHH-T
T ss_pred cCcccCcCCcChHHHccchhHHHhh-ccCCCeEeCcccccccChhhhhCc
Confidence 388999998877889998 2221 112357889999999999999988
No 386
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.86 E-value=0.0079 Score=59.17 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=30.5
Q ss_pred EEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCC
Q 006778 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV 148 (631)
Q Consensus 110 VvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~ 148 (631)
.+|||||+||.++|-.|+++ .|..+|+++-.++.+
T Consensus 2 fivvgggiagvscaeqla~~----~psa~illitass~v 36 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQL----EPSAEILLITASSFV 36 (334)
T ss_pred eEEEcCccccccHHHHHHhh----CCCCcEEEEeccHHH
Confidence 58999999999999999997 568899999877654
No 387
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.83 E-value=0.025 Score=62.81 Aligned_cols=33 Identities=39% Similarity=0.572 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
..|+|||+|++|+++|..|++. |.+|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 4699999999999999999998 99999999764
No 388
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=95.62 E-value=0.0071 Score=54.29 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=41.4
Q ss_pred CCCCccccc-----CCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCccee
Q 006778 566 DPKIPELVN-----LPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 566 ~~~~~~~~~-----~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
+++.|..|. .-+..||. +..+++....+.|+.+.|+.|+.|...||.+.|++.
T Consensus 6 ~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 65 (132)
T TIGR02060 6 YPTKCDGCKAGEKTACVYICPNDLMHLDTEIMKAYNIEPDMCWECYSCVKACPQGAIDVR 65 (132)
T ss_pred ccccccCccCCchhcCHhhcCccceEecCCCceeeecCchhCccHHHHHHhCCcCceEEE
Confidence 678898887 66889998 444433223457899999999999999999999754
No 389
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=95.55 E-value=0.01 Score=52.64 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=43.7
Q ss_pred ceEecCCCCcccccCCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCcceeC
Q 006778 561 HLRLRDPKIPELVNLPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 619 (631)
Q Consensus 561 h~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~ 619 (631)
++.+ +.+.|..|..-+-+||. +..++++ ..+.|+...|..||.|...||.+.|+++.
T Consensus 36 ~i~i-~~~~Ci~C~~C~~~CP~~ai~~~~~~-~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~ 94 (120)
T PRK08348 36 KILY-DVDKCVGCRMCVTVCPAGVFVYLPEI-RKVALWTGRCVFCGQCVDVCPTGALQMSD 94 (120)
T ss_pred eEEE-CcccCcCcccHHHHCCccceEccccc-cceEecCCcCcChhhhHHhCCcCcEEecc
Confidence 4555 67889888776889998 4333222 25788999999999999999999998754
No 390
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.49 E-value=0.052 Score=56.81 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=49.4
Q ss_pred CcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCC
Q 006778 205 GNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 205 ~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~ 284 (631)
..|.|+..+|- .+..-||.+..|.+|+.|...+. -|.++| |.+|..|..++|||++
T Consensus 255 d~FfvspeDLp-----~~~nGGvAvl~G~kvvkid~~d~----~V~LnD---------------G~~I~YdkcLIATG~~ 310 (659)
T KOG1346|consen 255 DGFFVSPEDLP-----KAVNGGVAVLRGRKVVKIDEEDK----KVILND---------------GTTIGYDKCLIATGVR 310 (659)
T ss_pred CcceeChhHCc-----ccccCceEEEeccceEEeecccC----eEEecC---------------CcEeehhheeeecCcC
Confidence 35667776663 34456799999999999977653 378887 8999999999999999
Q ss_pred CchhHHHHHHcC
Q 006778 285 GSLSEKLIKNFK 296 (631)
Q Consensus 285 s~~~~~l~~~~g 296 (631)
+.- -++.+..+
T Consensus 311 Pk~-l~~~~~A~ 321 (659)
T KOG1346|consen 311 PKK-LQVFEEAS 321 (659)
T ss_pred ccc-chhhhhcC
Confidence 863 33433333
No 391
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.49 E-value=0.058 Score=58.15 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=35.2
Q ss_pred HhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch
Q 006778 223 EELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 223 ~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
.+.+++++.++.|..+..... .|.+.+ | ++..|.+|+|+|++...
T Consensus 64 ~~~~i~~~~~~~v~~id~~~~----~v~~~~---------------g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 64 RATGIDVRTGTEVTSIDPENK----VVLLDD---------------G-EIEYDYLVLATGARPRP 108 (415)
T ss_pred HhhCCEEeeCCEEEEecCCCC----EEEECC---------------C-cccccEEEEcCCCcccC
Confidence 356899999999999876552 366665 5 78999999999998753
No 392
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.079 Score=54.33 Aligned_cols=76 Identities=30% Similarity=0.392 Sum_probs=60.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
..||.|||||-+|..||+-|+-. -..|+|+|=.+++.+
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGi------v~hVtllEF~~eLkA------------------------------------ 391 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGI------VEHVTLLEFAPELKA------------------------------------ 391 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhh------hheeeeeecchhhhh------------------------------------
Confidence 46899999999999999999977 568999997765432
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCC
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTND 253 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d 253 (631)
.+.|.+++..+ +|+|+.+..-++|.-+. .+|.|+...|
T Consensus 392 ----------------------------D~VLq~kl~sl~Nv~ii~na~Ttei~Gdg-~kV~Gl~Y~d 430 (520)
T COG3634 392 ----------------------------DAVLQDKLRSLPNVTIITNAQTTEVKGDG-DKVTGLEYRD 430 (520)
T ss_pred ----------------------------HHHHHHHHhcCCCcEEEecceeeEEecCC-ceecceEEEe
Confidence 33466776664 69999999999987765 3677888776
No 393
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=95.42 E-value=0.01 Score=54.96 Aligned_cols=49 Identities=20% Similarity=0.404 Sum_probs=37.0
Q ss_pred CCCcccccCC--ccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCccee
Q 006778 567 PKIPELVNLP--EYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 567 ~~~~~~~~~~--~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
+-.|-.|+.. ..+||. .+.+ ++ .+++|+|.|+-||+|.++||++.|+-.
T Consensus 50 pv~C~qCedaPC~~vCP~~AI~~~-~~--~v~V~~ekCiGC~~C~~aCPfGai~~~ 102 (165)
T COG1142 50 PVVCHHCEDAPCAEVCPVGAITRD-DG--AVQVDEEKCIGCKLCVVACPFGAITMV 102 (165)
T ss_pred CCcCCCCCCcchhhhCchhheeec-CC--ceEEchhhccCcchhhhcCCcceEEEE
Confidence 3345555443 678999 4444 44 689999999999999999999998643
No 394
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.42 E-value=1.5 Score=47.20 Aligned_cols=54 Identities=19% Similarity=0.089 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCC
Q 006778 215 VRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 215 ~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~ 284 (631)
.+.|.+.+++.|++|+++++|++|..++++ +..+...+ |.++.||.||.|.-..
T Consensus 200 ~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~~~~~~---------------g~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 200 PEPARRWLDSRGGEVRLGTRVRSIEANAGG-IRALVLSG---------------GETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHcCCEEEcCCeeeEEEEcCCc-ceEEEecC---------------CccccCCEEEEcCCHH
Confidence 344777777889999999999999988754 32222223 4678999999987744
No 395
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=95.41 E-value=0.0085 Score=33.37 Aligned_cols=17 Identities=29% Similarity=0.716 Sum_probs=14.1
Q ss_pred cCCccccccccccCCCC
Q 006778 597 AQNCLHCKACDIKDPKQ 613 (631)
Q Consensus 597 ~~~c~~c~tC~i~~p~~ 613 (631)
+++|+.|++|...||.+
T Consensus 1 ~~~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 1 QERCIGCGSCVDVCPTQ 17 (17)
T ss_dssp -CCCTTSSSSTTTSTT-
T ss_pred CCcCCCCchHHhhccCC
Confidence 36899999999999974
No 396
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.32 E-value=0.074 Score=62.58 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=46.2
Q ss_pred HHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCcc---ccCCC------------ccccccCceEEEcCEEEEecCCC
Q 006778 220 GKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI---AKDGS------------KKENFQRGVELRGRITLLAEGCR 284 (631)
Q Consensus 220 ~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~---~~~G~------------~~~~f~~g~~i~a~~vV~A~G~~ 284 (631)
+.|.+.||++.++....+++.+++|.+.+|++..+-. +..|. +.+...+..++.||.||.|.|..
T Consensus 648 ~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~ 727 (1028)
T PRK06567 648 IYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIE 727 (1028)
T ss_pred HHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccC
Confidence 3566789999999999999888778898887764320 11111 11223344789999999999965
Q ss_pred C
Q 006778 285 G 285 (631)
Q Consensus 285 s 285 (631)
.
T Consensus 728 ~ 728 (1028)
T PRK06567 728 N 728 (1028)
T ss_pred C
Confidence 4
No 397
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.15 E-value=0.041 Score=60.65 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
...|+|||+|.+|+-.|..|++. +.+|+++.++.
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~------a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKV------AKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHh------CCeEEEEEeec
Confidence 35799999999999999999998 89999999865
No 398
>CHL00065 psaC photosystem I subunit VII
Probab=95.07 E-value=0.0062 Score=49.87 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=41.0
Q ss_pred cCCCCcccccCCccccce--EEEcC-----CCCeEEEEecCCccccccccccCCCCCcceeCCCC
Q 006778 565 RDPKIPELVNLPEYAGPE--YVPDE-----KNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPEG 622 (631)
Q Consensus 565 ~~~~~~~~~~~~~~~~p~--~~~~~-----~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~p~g 622 (631)
++.+.|..|..-+-.||. +...+ .+.....++.+.|+.|+.|...||.+.|+|++=.|
T Consensus 6 ~~~~~Ci~Cg~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~~~ 70 (81)
T CHL00065 6 KIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLG 70 (81)
T ss_pred CccccCCChhHHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEEEEec
Confidence 356788888766788996 22211 11112356789999999999999999999876443
No 399
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=95.03 E-value=0.027 Score=57.50 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=41.8
Q ss_pred CCCCcccccCC--ccccce---EEEcCCCCeEEEEecCCccccccccccCCCCCcceeCC
Q 006778 566 DPKIPELVNLP--EYAGPE---YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 620 (631)
Q Consensus 566 ~~~~~~~~~~~--~~~~p~---~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~p 620 (631)
.+..|..|..+ +-+||. +..+++| .+.||.+.|+.|+.|...||++.|.+..-
T Consensus 127 ~p~~C~hC~nP~Cv~aCPtgAI~k~eedG--iV~ID~ekCiGCg~Cv~ACPygAi~~n~~ 184 (321)
T TIGR03478 127 LPRICNHCTNPACLAACPTGAIYKREEDG--IVLVDQERCKGYRYCVEACPYKKVYFNPQ 184 (321)
T ss_pred ecccCCCCCCccchhhCCcCcEEEecCCC--eEEECHHHCcchHHHHHhCCCCCcEecCC
Confidence 57889888754 778997 3334444 57899999999999999999999987643
No 400
>PLN02852 ferredoxin-NADP+ reductase
Probab=94.87 E-value=0.38 Score=53.21 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHh---------cCcEEecCceEEEEEEc--CCCcEEEEEeCCCcccc---CCCccccc-cCceEEEcCEE
Q 006778 213 QLVRWLGGKAEE---------LGVEIYPGFAASEILYD--ADNKVIGIGTNDMGIAK---DGSKKENF-QRGVELRGRIT 277 (631)
Q Consensus 213 ~l~~~L~~~a~~---------~Gv~i~~g~~v~~i~~~--~~g~v~gV~~~d~g~~~---~G~~~~~f-~~g~~i~a~~v 277 (631)
...+.|.+.+.+ .++.+++...-++|+.+ ++++|.+|++..+.+.. +|.....- ..-.++.+|.|
T Consensus 267 r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~V 346 (491)
T PLN02852 267 RVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLV 346 (491)
T ss_pred HHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEE
Confidence 355666655433 46899999999999853 23678888776432211 12211000 01257899999
Q ss_pred EEecCCCC
Q 006778 278 LLAEGCRG 285 (631)
Q Consensus 278 V~A~G~~s 285 (631)
|.|-|..+
T Consensus 347 i~aIG~~~ 354 (491)
T PLN02852 347 LKSIGYKS 354 (491)
T ss_pred EEeecCCC
Confidence 99999654
No 401
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.80 E-value=0.14 Score=52.66 Aligned_cols=104 Identities=17% Similarity=0.168 Sum_probs=76.0
Q ss_pred cCccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccC
Q 006778 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (631)
Q Consensus 104 ~~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~ 183 (631)
+.....++|||||..++..|--++-+ |.++-++=|...+-. .+.
T Consensus 186 ee~Pkr~vvvGaGYIavE~Agi~~gL------gsethlfiR~~kvLR------------------~FD------------ 229 (478)
T KOG0405|consen 186 EEQPKRVVVVGAGYIAVEFAGIFAGL------GSETHLFIRQEKVLR------------------GFD------------ 229 (478)
T ss_pred hhcCceEEEEccceEEEEhhhHHhhc------CCeeEEEEecchhhc------------------chh------------
Confidence 44567899999999999988888888 999988887764311 000
Q ss_pred cceEeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCcc
Q 006778 184 DKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKK 263 (631)
Q Consensus 184 ~~~~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~ 263 (631)
..+...+.+..+..|++++.++.+++++...+|....+...
T Consensus 230 ----------------------------~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~----------- 270 (478)
T KOG0405|consen 230 ----------------------------EMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSH----------- 270 (478)
T ss_pred ----------------------------HHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEec-----------
Confidence 12234466777788999999999999999887754333333
Q ss_pred ccccCceEEEcCEEEEecCCCCch
Q 006778 264 ENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 264 ~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
|.....|.++.|+|..+..
T Consensus 271 -----~~i~~vd~llwAiGR~Pnt 289 (478)
T KOG0405|consen 271 -----GTIEDVDTLLWAIGRKPNT 289 (478)
T ss_pred -----cccccccEEEEEecCCCCc
Confidence 3445699999999977653
No 402
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=94.78 E-value=0.016 Score=50.01 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=40.2
Q ss_pred CCCCcccccCCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCccee
Q 006778 566 DPKIPELVNLPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
|.+.|..|..-+-.||. +..++++ ...|+.+.|+.|+.|...||.+.|++.
T Consensus 49 d~~~Ci~C~~C~~~CP~~ai~~~~~~--~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09624 49 NRDKCVRCYLCYIYCPEPAIYLDEEG--YPVFDYDYCKGCGICANECPTKAIEMV 101 (105)
T ss_pred ChhHCcChhhHHhhCCHhhEEecCCC--cEEECchhCCCcCchhhhcCcCcEEEe
Confidence 67788888766778887 4444333 467889999999999999999999865
No 403
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=94.48 E-value=0.025 Score=46.18 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=41.1
Q ss_pred ecCCCCcccccCCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCccee
Q 006778 564 LRDPKIPELVNLPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 564 ~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
+.|.+.|..|.+-...||+ ....+++.... |||.-|--||-|.-.||...|+=+
T Consensus 31 v~d~~kCi~C~~C~~yCPe~~i~~~~~~~~~~-idYdyCKGCGICa~vCP~kaI~Mv 86 (91)
T COG1144 31 VVDEDKCINCKLCWLYCPEPAILEEEGGYKVR-IDYDYCKGCGICANVCPVKAIEMV 86 (91)
T ss_pred EEcccccccCceeEEECCchheeeccCCccce-eEcccccCceechhhCChhheEeE
Confidence 3477889998887889999 44444432111 999999999999999999988643
No 404
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=94.46 E-value=0.026 Score=57.08 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=42.5
Q ss_pred ceEecCCCCcccccCCccccce--EEE-cCCCCeEEEEecCCccccccccccCCCCCccee
Q 006778 561 HLRLRDPKIPELVNLPEYAGPE--YVP-DEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 561 h~~~~~~~~~~~~~~~~~~~p~--~~~-~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
+++..|++.|..|..-.-.||. ... .+.+..+..+|...|..||.|.-.||.+.|+++
T Consensus 194 ~i~~~~~~~C~~C~~C~~vCP~~~vl~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 194 KIAASDREKCTNCMDCFNVCPEPQVLRMPLKKGGSTLVLSGDCTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred EEEeeccccCeEcCCccCcCCCCceeeccccCCCceEeccccccchhHHHHhCCccccccc
Confidence 4555467889888777789997 111 111122457889999999999999999999876
No 405
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=94.26 E-value=0.043 Score=47.31 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=41.5
Q ss_pred cCCCCcccccCCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCccee
Q 006778 565 RDPKIPELVNLPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 565 ~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
.|++.|..|..-.-.||. +...+++ ...||...|..|+.|...||.+.|++.
T Consensus 48 i~~~~Ci~C~~C~~~CP~~ai~~~~~~--~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09623 48 VDESKCVKCYICWKFCPEPAIYIKEDG--YVAIDYDYCKGCGICANECPTKAITMV 101 (105)
T ss_pred ECcccCccccchhhhCCHhheEecCCC--cEEeCchhCcCcchhhhhcCcCcEEec
Confidence 378889988777778887 4344333 467899999999999999999999875
No 406
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.08 E-value=0.32 Score=54.98 Aligned_cols=113 Identities=20% Similarity=0.223 Sum_probs=70.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
...+||||-|+||-.+.-.+.+... .-.+|+|+=.-+.+.-... .|.+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~---~~~~iTvfg~Ep~~nY~Ri--------~Ls~--------------------- 50 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAP---DLYDITVFGEEPRPNYNRI--------LLSS--------------------- 50 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCc---ccceEEEeccCCCccccce--------eecc---------------------
Confidence 3569999999999999988887421 1467888755443322110 0000
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
.+..... ..++.-.-.+-.+++||+++.+.+|+.|..+. ++ |.+.+
T Consensus 51 -vl~~~~~----------------~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~--k~--V~t~~------------- 96 (793)
T COG1251 51 -VLAGEKT----------------AEDISLNRNDWYEENGITLYTGEKVIQIDRAN--KV--VTTDA------------- 96 (793)
T ss_pred -ccCCCcc----------------HHHHhccchhhHHHcCcEEEcCCeeEEeccCc--ce--EEccC-------------
Confidence 0000000 01111111234567899999999999997665 22 56555
Q ss_pred cCceEEEcCEEEEecCCCCch
Q 006778 267 QRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~~ 287 (631)
|.++..|.+|+|||+.+.+
T Consensus 97 --g~~~~YDkLilATGS~pfi 115 (793)
T COG1251 97 --GRTVSYDKLIIATGSYPFI 115 (793)
T ss_pred --CcEeecceeEEecCccccc
Confidence 7899999999999988764
No 407
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=93.95 E-value=0.029 Score=56.16 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=41.8
Q ss_pred CCCCcccccCC--ccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCcceeC
Q 006778 566 DPKIPELVNLP--EYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 619 (631)
Q Consensus 566 ~~~~~~~~~~~--~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~ 619 (631)
.+..|..|..+ +-+||. +..++++ .+.||.+.|+.|+.|...||++.|.+..
T Consensus 96 ~~~~C~~C~~p~Cv~~CP~~Ai~~~~~G--~v~id~~~CigC~~Cv~aCP~~Ai~~~~ 151 (244)
T PRK14993 96 LPRLCNHCDNPPCVPVCPVQATFQREDG--IVVVDNKRCVGCAYCVQACPYDARFINH 151 (244)
T ss_pred cchhcCCcCCccCccccCCCCEEECCCC--CEEEcHHHCCCHHHHHHhcCCCCCEEeC
Confidence 36788888764 678997 4445555 5789999999999999999999998864
No 408
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=93.94 E-value=0.062 Score=43.47 Aligned_cols=50 Identities=22% Similarity=0.208 Sum_probs=38.9
Q ss_pred CCCCcccccCCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCcce
Q 006778 566 DPKIPELVNLPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKW 617 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w 617 (631)
+++.|..|..-...||. +..++++ ...++...|..|+.|...||++.|+-
T Consensus 23 ~~~~C~~C~~C~~~Cp~~ai~~~~~~--~~~i~~~~C~~C~~C~~~CP~~Ai~~ 74 (78)
T TIGR02179 23 DKEKCIKCKNCWLYCPEGAIQEDEGG--FVGIDYDYCKGCGICANVCPVKAIEM 74 (78)
T ss_pred cCCcCcChhHHHhhcCccceEecCCC--cEEecCccCcCccchhhhCCccccEe
Confidence 67888887766778997 4443332 46788999999999999999998753
No 409
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=93.75 E-value=0.03 Score=50.49 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=39.2
Q ss_pred CCCCcccccCCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCccee
Q 006778 566 DPKIPELVNLPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
|.+.|..|..-+-.||. ....+. ....|+...|+.||.|...||++.|.+.
T Consensus 57 d~~~Ci~C~~C~~~CP~~ai~~~~~--~~~~i~~~~C~~Cg~Cv~vCP~~a~~l~ 109 (133)
T PRK09625 57 NNEICINCFNCWVYCPDAAILSRDK--KLKGVDYSHCKGCGVCVEVCPTNPKSLL 109 (133)
T ss_pred ehhHCcChhhHHHhCCHhheEecCC--ceEEeCcCcCcChhHHHHHCCcCceEEE
Confidence 77889988766778997 332222 2457899999999999999999986544
No 410
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=93.74 E-value=0.072 Score=56.85 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=41.8
Q ss_pred cCCCCcccccCC--ccccce---EEEcCCCCeEEEEecCCccccccccccCCCCCcceeC
Q 006778 565 RDPKIPELVNLP--EYAGPE---YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 619 (631)
Q Consensus 565 ~~~~~~~~~~~~--~~~~p~---~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~ 619 (631)
-.+..|..|... +-+||. +..+++| .+.||.+.|+.|+.|...||++.|.+..
T Consensus 178 y~p~~C~HC~nP~CV~ACPtGAI~k~eedG--iV~ID~dkCiGCg~CV~ACPygAI~~n~ 235 (492)
T TIGR01660 178 YLPRLCEHCLNPACVASCPSGAIYKREEDG--IVLIDQDKCRGWRMCISGCPYKKIYFNW 235 (492)
T ss_pred ECCCcCcCCCcccchhhCccCCeEEecCCC--eEEEehhhccChHHHHHhCCCCCcEecC
Confidence 368899988743 778998 3334454 4679999999999999999999998663
No 411
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=93.74 E-value=0.041 Score=52.57 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=39.8
Q ss_pred CCCCcccccCCccccceE----EEc--C----CCCeEEEEecCCccccccccccCCCCCccee
Q 006778 566 DPKIPELVNLPEYAGPEY----VPD--E----KNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~~----~~~--~----~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
+.+.|..|..-+.+||.. .+. . .....+.||+..|+-||.|...||.+.|.++
T Consensus 60 ~~~kCi~Cg~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~ 122 (183)
T TIGR00403 60 EFDKCIACEVCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMT 122 (183)
T ss_pred CcccCcCcCChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCCCeecc
Confidence 567788888778899982 111 1 1112578999999999999999999999864
No 412
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=0.14 Score=52.48 Aligned_cols=111 Identities=19% Similarity=0.225 Sum_probs=78.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcce
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (631)
.=.-+|||||-.+|.+|-.|+-. |++|+|.=|+-.+.+ +.
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gf------g~~vtVmVRSI~LrG-------------------FD--------------- 237 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGF------GYDVTVMVRSILLRG-------------------FD--------------- 237 (503)
T ss_pred CCceEEEccceeeeehhhhHhhc------CCCcEEEEEEeeccc-------------------cc---------------
Confidence 34689999999999999999999 999999988643332 00
Q ss_pred EeeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 187 ~~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
.++.+.+.+..++.|+.+...+-...++.-++|+. .|..... .+|+
T Consensus 238 -------------------------qdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t---~t~~----- 283 (503)
T KOG4716|consen 238 -------------------------QDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNT---NTGE----- 283 (503)
T ss_pred -------------------------HHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecc---cccc-----
Confidence 24456677788889999998888888888887864 3444331 1111
Q ss_pred cCceEEEcCEEEEecCCCCchhHHHHHHcCCC
Q 006778 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~~~~~l~~~~g~~ 298 (631)
+.+-..|-|+.|.|..+.+ +..+++
T Consensus 284 --~~~~~ydTVl~AiGR~~~~-----~~l~L~ 308 (503)
T KOG4716|consen 284 --EGEEEYDTVLWAIGRKALT-----DDLNLD 308 (503)
T ss_pred --cccchhhhhhhhhccccch-----hhcCCC
Confidence 2344678999999965543 345665
No 413
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=93.65 E-value=0.057 Score=46.39 Aligned_cols=59 Identities=12% Similarity=0.223 Sum_probs=42.8
Q ss_pred ceEecCCCCcccccCCccccce--EEEcCCC-----CeEEEEecCCccccccccccCCCCCcceeC
Q 006778 561 HLRLRDPKIPELVNLPEYAGPE--YVPDEKN-----QLKLQINAQNCLHCKACDIKDPKQNIKWTV 619 (631)
Q Consensus 561 h~~~~~~~~~~~~~~~~~~~p~--~~~~~~~-----~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~ 619 (631)
|....|.+.|..|..-+-+||. ....+.+ .....||...|+.|+.|...||.+.|++.-
T Consensus 9 ~~v~id~~~Ci~C~~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~~~~C~~C~~C~~~CP~~AI~~~~ 74 (103)
T PRK09626 9 TPVWVDESRCKACDICVSVCPAGVLAMRIDPHAVLGKMIKVVHPESCIGCRECELHCPDFAIYVAD 74 (103)
T ss_pred CCeEECcccccCCcchhhhcChhhhccccccccccCceeeEeCCccCCCcCcchhhCChhhEEEec
Confidence 3333488999998777889998 2222211 123568899999999999999999998643
No 414
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=93.61 E-value=0.044 Score=58.28 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=43.1
Q ss_pred CceEecCCCCccc--ccCC-ccccce-------EEEc-CCCCeEEEEecCCccccccccccCCCCCcc-eeCCC
Q 006778 560 AHLRLRDPKIPEL--VNLP-EYAGPE-------YVPD-EKNQLKLQINAQNCLHCKACDIKDPKQNIK-WTVPE 621 (631)
Q Consensus 560 ~h~~~~~~~~~~~--~~~~-~~~~p~-------~~~~-~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~-w~~p~ 621 (631)
.||-|.|.+.|.. |+.. ...||- ...+ +++++ .|.-+-|+-||-|--|||+..|. =+.|+
T Consensus 3 ~riAvvd~D~C~PkkC~~eC~~yCP~vrtg~~~I~i~~~~gkp--vIsE~lCiGCGICvkkCPF~AI~IvnLP~ 74 (591)
T COG1245 3 MRIAVVDYDRCQPKKCGYECIKYCPVVRTGKETIEIDEDTGKP--VISEELCIGCGICVKKCPFDAISIVNLPE 74 (591)
T ss_pred ceEEEeehhccCccccchhhhhcCCCccCCCeeEEecCCCCCc--eeEhhhhccchhhhccCCcceEEEecCch
Confidence 4677778777764 6554 678998 2223 34544 67799999999999999999996 44443
No 415
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=93.55 E-value=0.055 Score=50.83 Aligned_cols=55 Identities=22% Similarity=0.175 Sum_probs=42.5
Q ss_pred eEecCCCCcccccCCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCccee
Q 006778 562 LRLRDPKIPELVNLPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
....|++.|..|..-+-+||. +..++++ ...++.+.|+.||.|...||++.|+++
T Consensus 107 ~~~id~~~Ci~Cg~C~~aCp~~ai~~~~~~--~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 107 VALIDEDNCIGCTKCIQACPVDAIVGAAKA--MHTVIADECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred eEEEECCcCCChhHHHHhCCccceEecCCC--ceEeecccccChhHHHHhcCcCceEee
Confidence 344588999988766778996 4433332 346789999999999999999999986
No 416
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=93.55 E-value=0.056 Score=53.51 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=40.2
Q ss_pred CCCCcccccCC--ccccce--EEEc-CCCCeEEEEecCCccccccccccCCCCCccee
Q 006778 566 DPKIPELVNLP--EYAGPE--YVPD-EKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 566 ~~~~~~~~~~~--~~~~p~--~~~~-~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
++..|..|..+ +.+||. ...+ +.+ .+.||.+.|+.|+.|...||++.|.|.
T Consensus 90 ~~~~C~~C~~~~Cv~~CP~gAi~~~~~~g--~v~id~~~C~~C~~C~~aCP~~A~~~~ 145 (225)
T TIGR03149 90 FRKSCQHCDNAPCVAVCPTGASFKDEETG--IVDVHKDLCVGCQYCIAACPYRVRFIH 145 (225)
T ss_pred CchhccCCcCcChHhhCCCCcEEEeCCCC--eEEechhhCCcchHHHHhCCCCCcEec
Confidence 57788888763 788999 3333 334 477899999999999999999998775
No 417
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=93.55 E-value=0.073 Score=51.12 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=40.3
Q ss_pred CCCcccccCC--ccccce---EEEcCCCCeEEEEecCCccccccccccCCCCCcceeC
Q 006778 567 PKIPELVNLP--EYAGPE---YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 619 (631)
Q Consensus 567 ~~~~~~~~~~--~~~~p~---~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~ 619 (631)
+..|..|..+ +.+||. |...++| -+.||.+.||-||-|.++||++......
T Consensus 66 ~~~C~HC~~ppCv~vCPtgA~~k~~~dG--iV~vd~d~CIGC~yCi~ACPyga~~~~~ 121 (203)
T COG0437 66 SISCMHCEDPPCVKVCPTGALFKREEDG--IVLVDKDLCIGCGYCIAACPYGAPQFNP 121 (203)
T ss_pred cccccCCCCCcccccCCCcceEEecCCC--EEEecCCcccCchHHHhhCCCCCceeCc
Confidence 3557777766 789999 5544566 4778999999999999999999976554
No 418
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=93.52 E-value=0.039 Score=52.64 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=41.4
Q ss_pred CCCCcccccCCccccce--EEE--cC-CCCeEEEEecCCccccccccccCCCCCccee
Q 006778 566 DPKIPELVNLPEYAGPE--YVP--DE-KNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~--~~~--~~-~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
|++.|..|..-+-+||. ... +. .+...+.++...|+.||.|...||++.|++.
T Consensus 36 d~~~Ci~Cg~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~ 93 (181)
T PRK08222 36 MPSQCIACGACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLT 93 (181)
T ss_pred ChhhCcchhHHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcCeEEec
Confidence 67888888766789999 322 21 2335688999999999999999999999865
No 419
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=93.48 E-value=0.048 Score=46.67 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=35.9
Q ss_pred CCcccccCCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCcc
Q 006778 568 KIPELVNLPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 616 (631)
Q Consensus 568 ~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~ 616 (631)
+.|..|..-+-+||. ...+..+...+.|++..|..||.|...||.+.|.
T Consensus 34 ~~C~~C~~C~~~CP~~~i~~~~~g~~~~~i~~~~C~~Cg~C~~~CP~~Ai~ 84 (101)
T TIGR00402 34 AVCTRCGECASACENNILQLGQQGQPTVEFDNAECDFCGKCAEACPTNAFH 84 (101)
T ss_pred CcCcChhHHHHHcCcccceeccCCceeeEecCccCcCccChhhHCCccccC
Confidence 456555544568887 3333334446789999999999999999999885
No 420
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=93.45 E-value=0.043 Score=45.84 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=39.2
Q ss_pred cCCCCcccccCCccccce--EEEcC-------------CCC----eEEEEecCCccccccccccCCCCCcce
Q 006778 565 RDPKIPELVNLPEYAGPE--YVPDE-------------KNQ----LKLQINAQNCLHCKACDIKDPKQNIKW 617 (631)
Q Consensus 565 ~~~~~~~~~~~~~~~~p~--~~~~~-------------~~~----~~~~~~~~~c~~c~tC~i~~p~~~i~w 617 (631)
.|++.|..|..-+.+||. +.... ++. ..+.+|.+.|+.||.|.-.||.+.|+-
T Consensus 18 i~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~ 89 (91)
T TIGR02936 18 IDQEKCIGCGRCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCGACARVCPKKCQTH 89 (91)
T ss_pred ECHhHCCCcchHHHHcChhhceeeccccccccccccccccccccceeeecCCccCcChhhhhhhCCHhHEec
Confidence 388999988777888996 22211 001 134689999999999999999998864
No 421
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=93.37 E-value=0.21 Score=55.96 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=29.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
..+|+|||+|.+|.-.|..|++. ..+|.+.-|+.
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~------a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRV------AKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTT------SCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHh------cCCeEEEEecc
Confidence 46799999999999999999998 78898888764
No 422
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.34 E-value=0.28 Score=53.53 Aligned_cols=39 Identities=28% Similarity=0.152 Sum_probs=29.6
Q ss_pred cCCCEEEEccCCccCCCCCCcc-----hHHHHHHHHHHHHHHhc
Q 006778 413 VFPGGAIIGCAAGFLNVPKIKG-----THTAMKSGMLAAEAGFG 451 (631)
Q Consensus 413 ~~~~v~LiGDAA~~~~P~~g~G-----~~~Al~sa~~aA~~l~~ 451 (631)
..++|+.+||++...++..++. .+.|...|.++|+.|..
T Consensus 260 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 260 SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAG 303 (427)
T ss_pred CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcC
Confidence 4589999999998776655432 46788888888888753
No 423
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=93.18 E-value=0.065 Score=58.39 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=43.4
Q ss_pred CCCCcccccCCccccce-----EEEcCCCCeEEEEecCCccccccccccCCC-CCcceeCCCC
Q 006778 566 DPKIPELVNLPEYAGPE-----YVPDEKNQLKLQINAQNCLHCKACDIKDPK-QNIKWTVPEG 622 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~-----~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~-~~i~w~~p~g 622 (631)
|++.|..|..-+..||. ...++++.....|+.+.|+.|+.|-..||. +.|+...-.-
T Consensus 340 ~~~~C~~C~~C~~~Cp~~~~~ai~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~~~~ 402 (420)
T PRK08318 340 DQDKCIGCGRCYIACEDTSHQAIEWDEDGTRTPEVIEEECVGCNLCAHVCPVEGCITMGEVKF 402 (420)
T ss_pred CHHHCCCCCcccccCCCcchhheeeccCCCceEEechhhCcccchHHhhCCCCCCEEEeccCC
Confidence 77889888877888984 333333334577999999999999999999 8997665433
No 424
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=93.17 E-value=0.041 Score=44.86 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=43.7
Q ss_pred ceEecCCCCcccccCCccccce--EEEcCC-C----CeEEEEecCCccccccccccCCCCCcceeCCCCC
Q 006778 561 HLRLRDPKIPELVNLPEYAGPE--YVPDEK-N----QLKLQINAQNCLHCKACDIKDPKQNIKWTVPEGG 623 (631)
Q Consensus 561 h~~~~~~~~~~~~~~~~~~~p~--~~~~~~-~----~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~p~gg 623 (631)
|+.. +.+.|..|..-+..||. +..++. + ...+.++.+.|+.|+.|...||.+.|.|++=.|+
T Consensus 2 ~~~~-~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~ 70 (80)
T TIGR03048 2 HSVK-IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGA 70 (80)
T ss_pred ccee-cCCcCcCcchHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEEEecCc
Confidence 4533 56788888776788996 333221 1 1124567799999999999999999998765543
No 425
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=93.06 E-value=0.062 Score=47.67 Aligned_cols=52 Identities=23% Similarity=0.243 Sum_probs=38.0
Q ss_pred CCCcccccCCccccce--EEEc----CCCC---eEEEEecCCccccccccccCCCCCccee
Q 006778 567 PKIPELVNLPEYAGPE--YVPD----EKNQ---LKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 567 ~~~~~~~~~~~~~~p~--~~~~----~~~~---~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
.+.|..|..-..+||. +... +++. ..+.++...|+.||.|...||.+.|+.+
T Consensus 42 ~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~al~~~ 102 (122)
T TIGR01971 42 EEKCIGCTLCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLT 102 (122)
T ss_pred cCcCcCcchhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCCchhhhCCCcccccc
Confidence 4778888777889996 2211 1111 2467899999999999999999988654
No 426
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=92.83 E-value=0.078 Score=50.58 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=42.7
Q ss_pred eEecCCCCcccccCCccccce--EEEcC---CCCeEEEEecCCccccccccccCCCCCccee
Q 006778 562 LRLRDPKIPELVNLPEYAGPE--YVPDE---KNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~p~--~~~~~---~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
+.+ |++.|..|..-+-+||. ...+. .+...+.||.+.|+.||.|...||.+.|+++
T Consensus 33 p~~-d~~~C~~C~~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~~AI~~~ 93 (180)
T PRK12387 33 PEY-NPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLS 93 (180)
T ss_pred eEE-ChhhCcChhHHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCcCceEcc
Confidence 444 67888888766789998 32221 2334568999999999999999999999875
No 427
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=92.82 E-value=0.052 Score=59.93 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=42.4
Q ss_pred eEecCCCCcccccC--CccccceEEEcCCCCeEEEEecCCccccccccccCCCCCcc
Q 006778 562 LRLRDPKIPELVNL--PEYAGPEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 616 (631)
Q Consensus 562 ~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~ 616 (631)
..| |++.|..|.. ..+.||+..++++. .+..||-.-|+-||.|--.||+..|+
T Consensus 572 ~~V-d~~~CtGC~~C~~~~~Cpsi~~~~~~-~k~~id~~~C~GCg~C~~iCP~~a~~ 626 (640)
T COG4231 572 YFV-DEEKCTGCGDCIVLSGCPSIEPDPTF-KKARIDPSSCNGCGSCVEVCPSFAIK 626 (640)
T ss_pred cee-chhhcCCcHHHHhhcCCceEeecCCC-CceeecccccccchhhhhcCchhhee
Confidence 444 7899998844 47999996665542 57999998999999999889998874
No 428
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=92.76 E-value=0.068 Score=57.98 Aligned_cols=59 Identities=25% Similarity=0.292 Sum_probs=44.3
Q ss_pred CCCCcccccCCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCcceeCCCCCCCCCC
Q 006778 566 DPKIPELVNLPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPEGGGGPGY 628 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~p~gg~g~~y 628 (631)
|++.|..|..-+-.||. +..++. ...|+.+.|..|+.|...||.+.|+. ......|-.|
T Consensus 8 d~~~Ci~C~~C~~~CP~~ai~~~~~---~~~i~~~~C~~C~~C~~~CP~~AI~~-~~~~~~~~~~ 68 (411)
T TIGR03224 8 DPEICIRCNTCEETCPIDAITHDDR---NYVVKADVCNGCMACVSPCPTGAIDN-WRTMLRAKAY 68 (411)
T ss_pred CcccCcCccchhhhCCcccEeccCC---ceEeCcccCcCHHHHHhhcCccccee-cccccccccc
Confidence 78999999877889997 333322 46788999999999999999999984 2333344444
No 429
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=92.56 E-value=0.092 Score=49.09 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=41.1
Q ss_pred CCCcccccCC--ccccce--EEEc-CCCCeEEEEecCCccccccccccCCCCCcceeCCC
Q 006778 567 PKIPELVNLP--EYAGPE--YVPD-EKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPE 621 (631)
Q Consensus 567 ~~~~~~~~~~--~~~~p~--~~~~-~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~p~ 621 (631)
+..|..|..+ +.+||. +..+ +++ .+.|+++.|+.|+.|...||++.|.|....
T Consensus 61 ~~~C~~C~~~~C~~~CP~~ai~~~~~~~--~~~i~~~~C~~C~~C~~aCP~~ai~~~~~~ 118 (161)
T TIGR02951 61 SISCNHCADPACVKNCPTGAMYKREEDG--LVLVDQDKCIGCRYCVWACPYGAPQYDPQQ 118 (161)
T ss_pred CccCCCcCCcchHHhCCCCCEEeecCCC--cEEECHHhCCCchHHHhhCCCCCcEEcCCC
Confidence 5778888743 789997 3333 343 578899999999999999999999997543
No 430
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=92.54 E-value=0.04 Score=49.86 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=39.1
Q ss_pred CCCcccccCCccccce----EEE--cCCCCe---EEEEecCCccccccccccCCCCCcc
Q 006778 567 PKIPELVNLPEYAGPE----YVP--DEKNQL---KLQINAQNCLHCKACDIKDPKQNIK 616 (631)
Q Consensus 567 ~~~~~~~~~~~~~~p~----~~~--~~~~~~---~~~~~~~~c~~c~tC~i~~p~~~i~ 616 (631)
.+-|..|.+-+-.||+ ..+ ..++.. +..||..-|+-||-|.-.||...|.
T Consensus 110 eerCIACklCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaiv 168 (212)
T KOG3256|consen 110 EERCIACKLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168 (212)
T ss_pred chhhhhHHHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCcccee
Confidence 5678888888889999 222 224432 5679999999999999999999884
No 431
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=92.24 E-value=0.11 Score=55.02 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=39.2
Q ss_pred CCCCcccccCC--ccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCcceeCCC
Q 006778 566 DPKIPELVNLP--EYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPE 621 (631)
Q Consensus 566 ~~~~~~~~~~~--~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~p~ 621 (631)
+++.|..|... +-.||. ... + ..||.+.|+.|++|.-.||.+.|++..++
T Consensus 300 d~dkCi~Cg~C~~~~aCPt~AI~~--~----~~Id~~~Ci~CGaCV~aCP~~AI~~~~~~ 353 (391)
T TIGR03287 300 NPERCENCDPCLVEEACPVPAIKK--D----GTLNTEDCFGCGYCAEICPGGAFEVNLGS 353 (391)
T ss_pred chhhCcCCCCCcCCcCCCHhhEec--c----ceeChHhCcChHHHHhhCCccceEEeCCe
Confidence 67889888765 368997 331 1 25889999999999999999999987553
No 432
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.62 Score=45.10 Aligned_cols=98 Identities=19% Similarity=0.301 Sum_probs=72.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
.-.+|||||=+-+.-|..|.+. +-+|.+|-|++.+.+
T Consensus 158 k~laVIGGGDsA~EEA~fLtky------askVyii~Rrd~fRA------------------------------------- 194 (322)
T KOG0404|consen 158 KPLAVIGGGDSAMEEALFLTKY------ASKVYIIHRRDHFRA------------------------------------- 194 (322)
T ss_pred CeeEEEcCcHHHHHHHHHHHhh------ccEEEEEEEhhhhhH-------------------------------------
Confidence 3488999999999999999999 999999999876543
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhc-CcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f 266 (631)
...|.++++++ ++++++++.+.+..-+. +.+-+++..+ .+.|+.
T Consensus 195 ---------------------------s~~Mq~ra~~npnI~v~~nt~~~ea~gd~-~~l~~l~ikn---~~tge~---- 239 (322)
T KOG0404|consen 195 ---------------------------SKIMQQRAEKNPNIEVLYNTVAVEALGDG-KLLNGLRIKN---VKTGEE---- 239 (322)
T ss_pred ---------------------------HHHHHHHHhcCCCeEEEechhhhhhccCc-ccccceEEEe---cccCcc----
Confidence 23366777664 68999999887776553 3344455444 234443
Q ss_pred cCceEEEcCEEEEecCCCCc
Q 006778 267 QRGVELRGRITLLAEGCRGS 286 (631)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (631)
.++..+-+..|-|..+.
T Consensus 240 ---~dl~v~GlFf~IGH~Pa 256 (322)
T KOG0404|consen 240 ---TDLPVSGLFFAIGHSPA 256 (322)
T ss_pred ---cccccceeEEEecCCch
Confidence 67889999999997663
No 433
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=91.89 E-value=0.1 Score=53.17 Aligned_cols=58 Identities=19% Similarity=0.195 Sum_probs=40.8
Q ss_pred ceEecCCCCcccccCCccccce-EEEc--CCC-CeEEEEecCCccccccccccCCCCCccee
Q 006778 561 HLRLRDPKIPELVNLPEYAGPE-YVPD--EKN-QLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 561 h~~~~~~~~~~~~~~~~~~~p~-~~~~--~~~-~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
+++..|++.|..|..-.-+||. -... ..+ .....+|...|+.|+.|.-.||.+.|+++
T Consensus 201 ~i~~~d~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~ 262 (271)
T PRK09477 201 RVKAHDRQKCTRCMDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSEDVFNFT 262 (271)
T ss_pred ccccCCcccCcccCCcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCccceeec
Confidence 4443477889888877789997 1111 111 11234788999999999999999999864
No 434
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=91.85 E-value=0.079 Score=55.31 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=40.2
Q ss_pred cCCCCcccccCCccccce--E--EEcC-C---C----CeEEEEecCCccccccccccCCCCCccee
Q 006778 565 RDPKIPELVNLPEYAGPE--Y--VPDE-K---N----QLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 565 ~~~~~~~~~~~~~~~~p~--~--~~~~-~---~----~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
.|.+.|..|..-...||. . .+.+ . + ...+.+|+..|..|+.|...||.+.|++.
T Consensus 244 id~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~ 309 (312)
T PRK14028 244 IDHSKCIMCRKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMV 309 (312)
T ss_pred ECcccCcCcccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEec
Confidence 378899999888889997 1 1111 1 1 11355788999999999999999999764
No 435
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.84 E-value=0.2 Score=46.58 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
.|.|+|||..|.++|..|++. |.+|.++.+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccH
Confidence 389999999999999999999 99999999875
No 436
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=91.84 E-value=0.23 Score=46.57 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=37.8
Q ss_pred CCCCcccccCCccccce--EEEcC----CCC---eEEEEecCCccccccccccCCCCCcce
Q 006778 566 DPKIPELVNLPEYAGPE--YVPDE----KNQ---LKLQINAQNCLHCKACDIKDPKQNIKW 617 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~--~~~~~----~~~---~~~~~~~~~c~~c~tC~i~~p~~~i~w 617 (631)
+.+.|..|..-+.+||. +..+. ++. ..+.+|...|+.||.|...||.+.|..
T Consensus 56 ~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~ 116 (164)
T PRK05888 56 GEERCIACKLCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVE 116 (164)
T ss_pred CCccCCcccChHHHcCccccccccccCCCCcccceeeecCCCcCcccCcchhhcCcCccee
Confidence 34578888777789997 22111 121 246789999999999999999999864
No 437
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.80 E-value=0.23 Score=49.15 Aligned_cols=51 Identities=27% Similarity=0.558 Sum_probs=39.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC---------CCCccccccccChHhHHH
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE---------VGAHIISGNVFEPRALNE 165 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~---------~g~~~~~g~~i~~~~l~~ 165 (631)
+++|||+|..|...|..|.+. |..|+++|+.+. ...+...|...++..|.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~ 61 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEE 61 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHh
Confidence 689999999999999999999 999999998753 233334455556665544
No 438
>PRK06273 ferredoxin; Provisional
Probab=91.52 E-value=0.072 Score=49.85 Aligned_cols=52 Identities=12% Similarity=-0.022 Sum_probs=38.1
Q ss_pred CCCCcccccCCccccce--EEEcCCC----------CeEEEEecCCccccccccccCCCCCcce
Q 006778 566 DPKIPELVNLPEYAGPE--YVPDEKN----------QLKLQINAQNCLHCKACDIKDPKQNIKW 617 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~--~~~~~~~----------~~~~~~~~~~c~~c~tC~i~~p~~~i~w 617 (631)
+.+.|..|..-.-+||. ......+ ...+.||.+.|+.|+.|.-.||.+.|..
T Consensus 47 d~~~CigCg~C~~aCP~~AI~~~~~ep~~~~~~~~~~~~~~Id~~kCi~Cg~C~~aCP~~AI~~ 110 (165)
T PRK06273 47 FEELCIGCGGCANVCPTKAIEMIPVEPVKITEGYVKTKIPKIDYEKCVYCLYCHDFCPVFALFN 110 (165)
T ss_pred CchhCcChhHHHHhcCccceeeecccccchhcccccccceecccccCcCCCCcchhCCHhheec
Confidence 67788888766778997 2221100 1246899999999999999999998844
No 439
>PLN00071 photosystem I subunit VII; Provisional
Probab=91.48 E-value=0.075 Score=43.36 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=40.4
Q ss_pred CCCCcccccCCccccce--EEEcC-CC-C---eEEEEecCCccccccccccCCCCCcceeCCCCC
Q 006778 566 DPKIPELVNLPEYAGPE--YVPDE-KN-Q---LKLQINAQNCLHCKACDIKDPKQNIKWTVPEGG 623 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~--~~~~~-~~-~---~~~~~~~~~c~~c~tC~i~~p~~~i~w~~p~gg 623 (631)
+.+.|..|..-+-.||. +..++ ++ . ....++.+.|+.|+.|...||.+.|.++.=.|+
T Consensus 7 ~~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~~~~ 71 (81)
T PLN00071 7 IYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGH 71 (81)
T ss_pred cCCcCcChhHHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEeeeecc
Confidence 56778887766778886 33221 11 1 112357899999999999999999998765443
No 440
>PRK09898 hypothetical protein; Provisional
Probab=91.47 E-value=0.31 Score=47.67 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=39.0
Q ss_pred CCCCcccccCC--ccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCccee
Q 006778 566 DPKIPELVNLP--EYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 566 ~~~~~~~~~~~--~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
++..|..|... +.+||. ...++.. ..+.++.+.|+.|+.|...||++.|...
T Consensus 119 ~~~~C~~C~~~~C~~~CP~gAi~~~~~~-g~v~vd~~~CigC~~C~~aCP~~ai~~~ 174 (208)
T PRK09898 119 TADTCRQCKEPQCMNVCPIGAITWQQKE-GCITVDHKRCIGCSACTTACPWMMATVN 174 (208)
T ss_pred eCccCCCccCcchhhhCCcceEEeeccC-CeEEeccccCCCcCcccccCCCCCCEec
Confidence 56788888643 788997 3333221 1578899999999999999999988754
No 441
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.43 E-value=0.21 Score=55.19 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCC
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV 148 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~ 148 (631)
.|+|||.|++|+++|..|++. |++|++.|+....
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCch
Confidence 489999999999999999999 9999999987643
No 442
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.13 E-value=0.26 Score=46.98 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~ 147 (631)
.|.|||+|..|..-|..+++. |++|+++|..+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH
Confidence 389999999999999999999 999999998753
No 443
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=91.04 E-value=0.045 Score=40.91 Aligned_cols=20 Identities=40% Similarity=0.795 Sum_probs=14.8
Q ss_pred ecCCccccccccccCCCCCc
Q 006778 596 NAQNCLHCKACDIKDPKQNI 615 (631)
Q Consensus 596 ~~~~c~~c~tC~i~~p~~~i 615 (631)
+.+.|++||.|...||++.|
T Consensus 36 ~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 36 NAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp TGGG--TTCHHHHHSTTT-E
T ss_pred CCCccccHhHHHHHcchhhC
Confidence 44689999999999999876
No 444
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=90.86 E-value=0.1 Score=54.46 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=39.3
Q ss_pred CCCcccccCC--ccccce--EEEcC-CCCeEEEEecCCccccccccccCCCCCcceeC
Q 006778 567 PKIPELVNLP--EYAGPE--YVPDE-KNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 619 (631)
Q Consensus 567 ~~~~~~~~~~--~~~~p~--~~~~~-~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~ 619 (631)
+..|..|..+ +-+||. +..++ ++ .+.+|.+.|+.|+.|...||++.|.+.+
T Consensus 109 ~~~C~hC~~p~Cv~aCP~gAi~k~~~~g--~V~id~dkCigCg~Cv~aCP~gai~~~~ 164 (328)
T PRK10882 109 KKQCMHCVDPNCVSVCPVSALTKDPKTG--IVHYDKDVCTGCRYCMVACPFNVPKYDY 164 (328)
T ss_pred cccCCCcCchhhHhhCCCCCEEecccCC--cccCCHHHcCcccHHHHhCCccceeccc
Confidence 4678888654 678998 54443 24 4678999999999999999999997543
No 445
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=90.82 E-value=1.5 Score=46.56 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=31.1
Q ss_pred cCccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC
Q 006778 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (631)
Q Consensus 104 ~~~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~ 147 (631)
......|||+|.|-+|.+..-.|-.. -.+|+|+..+..
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts------~YdV~vVSPRny 89 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTS------LYDVTVVSPRNY 89 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhcccc------ccceEEeccccc
Confidence 34567899999999999988877776 789999987654
No 446
>PRK02651 photosystem I subunit VII; Provisional
Probab=90.68 E-value=0.12 Score=42.07 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=40.8
Q ss_pred CceEecCCCCcccccCCccccce--EEEcC-C----CCeEEEEecCCccccccccccCCCCCcceeC
Q 006778 560 AHLRLRDPKIPELVNLPEYAGPE--YVPDE-K----NQLKLQINAQNCLHCKACDIKDPKQNIKWTV 619 (631)
Q Consensus 560 ~h~~~~~~~~~~~~~~~~~~~p~--~~~~~-~----~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~ 619 (631)
+|. +...+.|..|..-.-.||. +..++ + +...+.++.+.|+-|+.|.-.||.+.|.+++
T Consensus 2 ~~~-~~~~~~Ci~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 67 (81)
T PRK02651 2 SHA-VKIYDTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRV 67 (81)
T ss_pred Ccc-ccccccCCCcchHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEEEE
Confidence 344 3346788888766778996 32211 1 1112456789999999999999999998654
No 447
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=90.68 E-value=0.018 Score=42.69 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=22.5
Q ss_pred ccccce----EEEc--CCCCeEEEEecCCccccccccccCCCC
Q 006778 577 EYAGPE----YVPD--EKNQLKLQINAQNCLHCKACDIKDPKQ 613 (631)
Q Consensus 577 ~~~~p~----~~~~--~~~~~~~~~~~~~c~~c~tC~i~~p~~ 613 (631)
+.+||. +... +.+...+.||.+.|++||.|...||++
T Consensus 9 ~~~CP~~~i~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~ 51 (52)
T PF12838_consen 9 VEACPTGAIRLDEEENEEGKPKMVIDPDKCTGCGACVEVCPTG 51 (52)
T ss_dssp HHH-TTHHCEEEETTT-SSSTTSEETGGG----SHHHHHTTTS
T ss_pred HHhcCccccCcccccccCCceEEEEechhCcCcChhhhhCcCc
Confidence 457887 2222 123456789999999999999999976
No 448
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.60 E-value=0.39 Score=45.19 Aligned_cols=34 Identities=35% Similarity=0.400 Sum_probs=29.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
...|+|+|+|.+|..||..|..+ |++|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHT------T-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHC------CCEEEeccCCH
Confidence 46899999999999999999999 99999999865
No 449
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=90.40 E-value=0.12 Score=53.41 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=42.4
Q ss_pred ecCCCCcccccCCccccce--EE--EcCCCCeEEEEecCCccccccccccCCCCCccee
Q 006778 564 LRDPKIPELVNLPEYAGPE--YV--PDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 564 ~~~~~~~~~~~~~~~~~p~--~~--~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
+.|++.|..|..-+-+||. .. ....+.....++...|..||.|-..||++.|.+.
T Consensus 44 ~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 102 (295)
T TIGR02494 44 LFKENRCLGCGKCVEVCPAGTARLSELADGRNRIIIRREKCTHCGKCTEACPSGALSIV 102 (295)
T ss_pred EEccccCCCCchhhhhCcccccccccccCCCcceeechhhcCchhHhhccCcHhHHhhh
Confidence 3488999999877788998 21 1112234678999999999999999999998774
No 450
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.38 E-value=0.56 Score=40.80 Aligned_cols=49 Identities=35% Similarity=0.601 Sum_probs=35.8
Q ss_pred EEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC-------CCCccccccccChHhHH
Q 006778 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-------VGAHIISGNVFEPRALN 164 (631)
Q Consensus 110 VvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~-------~g~~~~~g~~i~~~~l~ 164 (631)
|+|+|.|..|...|..|.+. +.+|+++|+.+. .|.....|...++..|.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~ 56 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLE 56 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEECCcHHHHHHHhcccccccccchhhhHHh
Confidence 79999999999999999998 889999998863 23333445555555543
No 451
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.37 E-value=0.42 Score=43.79 Aligned_cols=31 Identities=35% Similarity=0.529 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 110 VvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
|+|+|+|-.|+..|..|++. |.+|.++-|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc
Confidence 78999999999999999998 99999999875
No 452
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.33 E-value=0.3 Score=46.73 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=27.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~ 147 (631)
.|.|||.|..||.+|..|++. |++|+.+|..+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~------G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK------GHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT------TSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhC------CCEEEEEeCChH
Confidence 589999999999999999999 999999998764
No 453
>PLN02976 amine oxidase
Probab=90.16 E-value=5 Score=49.61 Aligned_cols=39 Identities=21% Similarity=0.010 Sum_probs=30.1
Q ss_pred CCCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC
Q 006778 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 455 (631)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~ 455 (631)
.++++++|++.+...| .=++-|+++|..+|+.|...+..
T Consensus 1150 ggRLFFAGEATS~~~p---GTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1150 ENCLFFAGEATCKEHP---DTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred CCcEEEEehhhhCCCc---chHHHHHHHHHHHHHHHHHHHHc
Confidence 3579999999775443 34688999999999998877753
No 454
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=90.00 E-value=0.31 Score=41.79 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
...|+|||||..|..-+..|.+. |.+|+|+.+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch
Confidence 46799999999999999999998 99999998763
No 455
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=89.95 E-value=0.18 Score=48.49 Aligned_cols=55 Identities=18% Similarity=0.142 Sum_probs=41.9
Q ss_pred eEecCCCCcccccCCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCccee
Q 006778 562 LRLRDPKIPELVNLPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
..+.|++.|..|..-+.+||- +...+++ ...++.+.|+.||.|...||.+.|++.
T Consensus 108 ~~~id~~~Ci~Cg~Cv~aCp~~ai~~~~~~--~~~v~~~~C~~Cg~Cv~vCP~~AI~~~ 164 (191)
T PRK05113 108 VAFIDEDNCIGCTKCIQACPVDAIVGATKA--MHTVISDLCTGCDLCVAPCPTDCIEMI 164 (191)
T ss_pred eeEEeCCcCCCCChhhhhCCHhhhecccCC--ceeecCCcCCchHHHHHHcCcCceEEe
Confidence 344488999998877889986 3322222 346789999999999999999999876
No 456
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.83 E-value=0.34 Score=53.64 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~ 147 (631)
.-.|+|+|+|++||.++..++.. |.+|+++|.++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL------GAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 46799999999999999999988 999999998763
No 457
>PRK06991 ferredoxin; Provisional
Probab=89.76 E-value=0.18 Score=51.11 Aligned_cols=52 Identities=23% Similarity=0.202 Sum_probs=40.4
Q ss_pred cCCCCcccccCCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCccee
Q 006778 565 RDPKIPELVNLPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 565 ~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
.|.+.|..|..-+.+||. +...+++ ...|+...|+.||.|.-.||.+.|...
T Consensus 82 id~~~CigCg~Cv~aCP~~AI~~~~~~--~~~v~~~~CigCg~Cv~vCP~~AI~~~ 135 (270)
T PRK06991 82 IDEQLCIGCTLCMQACPVDAIVGAPKQ--MHTVLADLCTGCDLCVPPCPVDCIDMV 135 (270)
T ss_pred EccccCCCCcHHHHhCCHhheeccccc--ceeeCHhhCCCchHHHhhCCcCCeEee
Confidence 377889998777889997 4333222 356889999999999999999988754
No 458
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=89.74 E-value=0.17 Score=53.22 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=34.0
Q ss_pred ccccce--EEEc-CCCCeEEEEecCCccccccccccCCCCCcc------eeCCCCC
Q 006778 577 EYAGPE--YVPD-EKNQLKLQINAQNCLHCKACDIKDPKQNIK------WTVPEGG 623 (631)
Q Consensus 577 ~~~~p~--~~~~-~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~------w~~p~gg 623 (631)
+.+||. .... +.+..++.||.+.|++||.|.-.||.+.|+ |++=-||
T Consensus 190 v~~CP~~Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~~~~~~G~~v~vGG 245 (341)
T TIGR02066 190 VAACPTGALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPAMPIFDPENDGAAIWVGG 245 (341)
T ss_pred EeeCchhhceecccCCCCceeeccccCCcCCchHHhCchhhccCCCCCeEEEEEcc
Confidence 567888 3332 222347899999999999999999987764 4554455
No 459
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.64 E-value=0.34 Score=50.90 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=38.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~ 153 (631)
.+|||||||-|..-...|.+.++. |.+|+=+|+++..|+++.
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrs------G~sVLHlDsn~yYGg~wa 48 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRS------GSSVLHLDSNEYYGGNWA 48 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhc------CCceEeccCccccCCccc
Confidence 479999999999999999999999 999999999999988764
No 460
>PRK08764 ferredoxin; Provisional
Probab=89.54 E-value=0.27 Score=44.51 Aligned_cols=56 Identities=18% Similarity=0.075 Sum_probs=39.4
Q ss_pred ceEecCCCCcccccCCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCccee
Q 006778 561 HLRLRDPKIPELVNLPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 561 h~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
++.+.+.+.|..|..-+-+||. ...++.+ ...++...|+.||.|.-.||++.|+++
T Consensus 78 ~~~~~~~~~Ci~C~~Cv~aCp~~ai~~~~~~--~~~v~~~~C~~Cg~Cv~~CP~~Ai~~~ 135 (135)
T PRK08764 78 QVAWIVEADCIGCTKCIQACPVDAIVGGAKH--MHTVIAPLCTGCELCVPACPVDCIELH 135 (135)
T ss_pred eeEEECcccCcCcchHHHhCChhhcCccCCC--ceeecCCcCcCccchhhhcCccceEeC
Confidence 3433345678877655778996 3222222 345789999999999999999999874
No 461
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=89.32 E-value=0.2 Score=57.11 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=38.6
Q ss_pred CceEecCCCCcccccCCcc--ccceEEEcCCCCeEEEEecCCccccccccccCCCCCc
Q 006778 560 AHLRLRDPKIPELVNLPEY--AGPEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNI 615 (631)
Q Consensus 560 ~h~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i 615 (631)
..+.+ |++.|..|..-.- .||+...++ + +..||. .|+-||.|-..||.+.|
T Consensus 543 ~~~~i-d~~~C~~C~~C~~~~~CP~~~~~~-~--~~~i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 543 GPYKV-DQDKCIGCKKCIKELGCPAIEPED-K--EAVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred ceEEE-cCCcCCCccccccccCCCCccccC-C--cceeCC-CCcCHHHHHhhCccccC
Confidence 35666 7789999876644 999854332 2 577888 79999999999998765
No 462
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=89.22 E-value=0.51 Score=46.00 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeC
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG 145 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~ 145 (631)
..|+|||||.+|...+..|.+. |.+|+|+...
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCC
Confidence 4799999999999999999999 9999999864
No 463
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=89.22 E-value=0.29 Score=46.64 Aligned_cols=49 Identities=16% Similarity=0.350 Sum_probs=38.0
Q ss_pred CCCcccccCC--ccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCccee
Q 006778 567 PKIPELVNLP--EYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 567 ~~~~~~~~~~--~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
+..|..|... +-+||. +..+ ++ .+.||.+.|+.|+.|...||++.|.+.
T Consensus 55 ~~~C~~C~~~~C~~~Cp~~ai~~~-~~--~v~i~~~~C~~C~~C~~~CP~~ai~~~ 107 (181)
T PRK10330 55 ATVCRQCEDAPCANVCPNGAISRD-KG--FVHVMQERCIGCKTCVVACPYGAMEVV 107 (181)
T ss_pred CCcCcCcCCcHHHHHcCcccEEcc-CC--eEEeChhhCCCcchhhhhCCccCeEee
Confidence 4667777643 678997 5433 33 467899999999999999999999865
No 464
>PRK07118 ferredoxin; Validated
Probab=89.16 E-value=0.28 Score=50.15 Aligned_cols=53 Identities=17% Similarity=0.133 Sum_probs=40.3
Q ss_pred CCCcccccCCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCcceeCCCC
Q 006778 567 PKIPELVNLPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPEG 622 (631)
Q Consensus 567 ~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~p~g 622 (631)
+..|..|..-+-.||. +..+++ ..+||++.|+.||.|..+||++.|.|.-.+.
T Consensus 212 ~~~Ci~Cg~Cv~~CP~~AI~~~~~---~~vId~~~C~~Cg~C~~~CP~~AI~~~~~~~ 266 (280)
T PRK07118 212 EVGCIGCGKCVKACPAGAITMENN---LAVIDQEKCTSCGKCVEKCPTKAIRILNKPP 266 (280)
T ss_pred ccccccchHHHhhCCcCcEEEeCC---cEEEcCCcCCCHHHHHHhCCccccEeecccc
Confidence 4557766555778997 444322 4678999999999999999999999875543
No 465
>PLN02568 polyamine oxidase
Probab=89.15 E-value=9.8 Score=42.91 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCC
Q 006778 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 283 (631)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~ 283 (631)
..|.+.|.+.+. +.+|+++++|+.|..++++ | .|.+.+ |.++.||.||++.-.
T Consensus 242 ~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~-v-~V~~~d---------------G~~~~aD~VIvTvPl 294 (539)
T PLN02568 242 LSVIEALASVLP--PGTIQLGRKVTRIEWQDEP-V-KLHFAD---------------GSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCe-E-EEEEcC---------------CCEEEcCEEEEcCCH
Confidence 446666666553 3469999999999987643 3 466665 668999999998863
No 466
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.14 E-value=0.44 Score=50.91 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
..+|+|||+|.+|+.+|..|++. |.+|+++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL------GATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCH
Confidence 45799999999999999999999 99999999864
No 467
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=89.13 E-value=0.15 Score=54.71 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=39.8
Q ss_pred CCCCcccccCCccccce--EE----EcCCCC-------eEEEEecCCccccccccccCCCCCccee
Q 006778 566 DPKIPELVNLPEYAGPE--YV----PDEKNQ-------LKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~--~~----~~~~~~-------~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
|++.|..|..-+..||. .. ..+.+. ....||.+.|+.||.|...||.+.|.+.
T Consensus 5 d~~kCi~Cg~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 5 DMSKCIGCGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred chhhCCcChHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhh
Confidence 77889998877889997 22 111211 1245889999999999999999999765
No 468
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=89.11 E-value=0.94 Score=49.54 Aligned_cols=41 Identities=41% Similarity=0.566 Sum_probs=34.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccc
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~ 153 (631)
.||.+|||+|-|||.+|..|++. |..+.++-|-.....+.+
T Consensus 55 ~~da~vvgaggAGlr~~~~lae~------g~~~a~itkl~p~~s~tv 95 (642)
T KOG2403|consen 55 TYDAVVVGAGGAGLRAARGLAEL------GEKTAVITKLFPTRSHTV 95 (642)
T ss_pred eceeEEEeccchhhhhhhhhhhc------CceEEEEeccccccccch
Confidence 49999999999999999999999 999999988655444443
No 469
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=89.11 E-value=0.16 Score=53.05 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=37.6
Q ss_pred CCCCcccccCCccccce-----EEEcCCCCeEEEEecCCccccccccccCCCCCcc
Q 006778 566 DPKIPELVNLPEYAGPE-----YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 616 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~-----~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~ 616 (631)
|.+.|..|..-+-+||. ..+. ++ ++.||.+.|+.||.|.-.||++.|.
T Consensus 167 d~~~C~~Cg~C~~~Cp~~a~~ai~~~-~~--~~~id~~~C~~Cg~Cv~~CP~~Al~ 219 (314)
T TIGR02912 167 DADRCIGCGACVKVCKKKAVGALSFE-NY--KVVRDHSKCIGCGECVLKCPTGAWT 219 (314)
T ss_pred eCccCCcchHHHHhcChhhcCceecc-CC--eEEeCCCcCcCcchhhhhCCHhhcc
Confidence 56778888766778995 3332 22 6889999999999999999998764
No 470
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.10 E-value=0.48 Score=45.60 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=28.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
...|+|||+|.++.-+|..|++. |.+|+++-|++
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~------g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKA------GKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTT------CSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhh------CCEEEEEecCC
Confidence 46899999999999999999999 99999999875
No 471
>PRK13409 putative ATPase RIL; Provisional
Probab=88.81 E-value=0.24 Score=56.33 Aligned_cols=60 Identities=25% Similarity=0.290 Sum_probs=41.6
Q ss_pred ceEecCCCCccc--ccCC-ccccce-------EEEcCCCCeEEEEecCCccccccccccCCCCCcc-eeCCC
Q 006778 561 HLRLRDPKIPEL--VNLP-EYAGPE-------YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK-WTVPE 621 (631)
Q Consensus 561 h~~~~~~~~~~~--~~~~-~~~~p~-------~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~-w~~p~ 621 (631)
+|-|.|.+.|.. |+.. ...||- ...+++. .+-.|.-+-|+-||-|--|||++.|+ =+.|+
T Consensus 3 ~~~~~~~~~c~~~~c~~~c~~~cp~~~~~~~~~~~~~~~-~~~~~~e~~c~~c~~c~~~cp~~a~~i~~~p~ 73 (590)
T PRK13409 3 RIAVVDYDRCQPKKCNYECIKYCPVVRTGEETIEIDEDD-GKPVISEELCIGCGICVKKCPFDAISIVNLPE 73 (590)
T ss_pred eEEEeeccccCcchhhhhHHhhCCCcccCCeEEEEcCCC-CCceeeHhhccccccccccCCcceEEEeeCch
Confidence 455666666653 5555 578887 3333322 25567789999999999999999997 44554
No 472
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=88.79 E-value=0.49 Score=42.83 Aligned_cols=32 Identities=34% Similarity=0.390 Sum_probs=27.9
Q ss_pred EEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC
Q 006778 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (631)
Q Consensus 110 VvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~ 147 (631)
++|+|+|+.+.+.|..++.. |++|+|+|.+++
T Consensus 1 L~I~GaG~va~al~~la~~l------g~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL------GFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC------TEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhC------CCEEEEEcCCcc
Confidence 58999999999999999999 999999998764
No 473
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.61 E-value=0.37 Score=55.70 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=37.8
Q ss_pred CCCCcccccCC--ccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCcceeC
Q 006778 566 DPKIPELVNLP--EYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 619 (631)
Q Consensus 566 ~~~~~~~~~~~--~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~ 619 (631)
.+..|..|... ..+||. +... ++ .+.||.+.|+.|+.|...||++.|.|..
T Consensus 52 ~~~~C~~C~~~~C~~~CP~~ai~~~-~~--~~~id~~~C~~C~~C~~~CP~~ai~~~~ 106 (654)
T PRK12769 52 SAVTCHHCEDAPCARSCPNGAISHV-DD--SIQVNQQKCIGCKSCVVACPFGTMQIVL 106 (654)
T ss_pred CCccCCCCCChhHhhhCCccceecc-CC--eEEEecccccCcChhcccCCccCeeecc
Confidence 36678877653 678888 4333 22 5778899999999999999999888764
No 474
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=88.60 E-value=0.36 Score=36.76 Aligned_cols=23 Identities=26% Similarity=0.626 Sum_probs=14.8
Q ss_pred EEecCCccccccccccCCCCCcc
Q 006778 594 QINAQNCLHCKACDIKDPKQNIK 616 (631)
Q Consensus 594 ~~~~~~c~~c~tC~i~~p~~~i~ 616 (631)
+||.+-|+.||.|-..||.+.|+
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~~~~~ 24 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPDGAID 24 (59)
T ss_dssp EE-TTT----SCCCHHCCCCS-S
T ss_pred EECcccccChhhHHhHcCcccee
Confidence 58999999999999999975554
No 475
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=88.58 E-value=0.2 Score=49.85 Aligned_cols=48 Identities=23% Similarity=0.237 Sum_probs=37.5
Q ss_pred CCCCcccccCCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCcc
Q 006778 566 DPKIPELVNLPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 616 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~ 616 (631)
|++.|..|..-+-.||. .... ++ ...+|...|..||.|...||.+.|+
T Consensus 146 d~~~C~~C~~C~~~CP~~ai~~~-~~--~~~i~~~~C~~Cg~C~~~CP~~AI~ 195 (234)
T TIGR02700 146 DRKRCKGCGICVDACPRSAIDMV-DG--KAFIRLLKCVGCGKCKEACPYNAIH 195 (234)
T ss_pred ChhHCcCcchHHHhCCcccEEec-CC--ceEEchhhCCccchHHhhCCCCcee
Confidence 66778887766778997 3333 22 3588999999999999999999885
No 476
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.50 E-value=0.57 Score=51.54 Aligned_cols=34 Identities=35% Similarity=0.508 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
...|+|||+|.+|+++|..|++. |++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 35799999999999999999999 99999999865
No 477
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.32 E-value=0.52 Score=49.09 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~ 147 (631)
+|.|||+|..|.+.|..|++. |++|+++|+.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHH
Confidence 599999999999999999999 999999998763
No 478
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.28 E-value=0.41 Score=48.66 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=31.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 106 ~~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
..-+|+|+|||.+|..+|.-+... |.+|+++|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc------CCeeEEEecCH
Confidence 356899999999999999999998 99999999874
No 479
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=88.11 E-value=0.63 Score=51.24 Aligned_cols=110 Identities=19% Similarity=0.181 Sum_probs=75.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCCCCCccccccccChHhHHHHhhhhhhcCCCeeeeccCcceE
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (631)
-.|+|||||..|+-+|..|++. |.+|+++++......
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~------G~~Vtlv~~~~~~~~------------------------------------- 309 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRL------GAEVHCLYRRTREDM------------------------------------- 309 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCEEEEEeecCcccC-------------------------------------
Confidence 4799999999999999999999 999999998753100
Q ss_pred eeccCCcccCCCCCCCCCcEEEeHHHHHHHHHHHHHhcCcEEecCceEEEEEEcCCCcEEEEEeCCCc---cccCCCccc
Q 006778 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSKKE 264 (631)
Q Consensus 188 ~l~~~~~~~~p~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g---~~~~G~~~~ 264 (631)
+. .....+.+++.||++++++.++++..+++|++.+|.+..+. .+.+|....
T Consensus 310 ----------~~---------------~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~ 364 (449)
T TIGR01316 310 ----------TA---------------RVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRF 364 (449)
T ss_pred ----------CC---------------CHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeee
Confidence 00 01123455678999999999999987666777777664211 112332111
Q ss_pred cc--cCceEEEcCEEEEecCCCC
Q 006778 265 NF--QRGVELRGRITLLAEGCRG 285 (631)
Q Consensus 265 ~f--~~g~~i~a~~vV~A~G~~s 285 (631)
.. ....++.+|.||.|.|..+
T Consensus 365 ~~~~~~~~~i~~D~Vi~AiG~~p 387 (449)
T TIGR01316 365 LPCGDAECKLEADAVIVAIGNGS 387 (449)
T ss_pred eecCCceEEEECCEEEECCCCCC
Confidence 11 1124689999999999654
No 480
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.00 E-value=6.8 Score=41.70 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=44.0
Q ss_pred HHHHHHHHHH---hcCcEEecCceEEEEEEcCCCcEEEEEeCCCccccCCCccccccCceEEEcCEEEEecCCCCch
Q 006778 214 LVRWLGGKAE---ELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (631)
Q Consensus 214 l~~~L~~~a~---~~Gv~i~~g~~v~~i~~~~~g~v~gV~~~d~g~~~~G~~~~~f~~g~~i~a~~vV~A~G~~s~~ 287 (631)
+-..|.++-. +..+.++.++.|+.++..++|++ .+.+.. ..+|+ ..+++.|.||+|||-+-.+
T Consensus 277 Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~-~l~~~~---~~~~~-------~~t~~~D~vIlATGY~~~~ 342 (436)
T COG3486 277 IYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY-RLTLRH---HETGE-------LETVETDAVILATGYRRAV 342 (436)
T ss_pred HHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE-EEEEee---ccCCC-------ceEEEeeEEEEecccccCC
Confidence 3344554422 23588999999999998887764 455554 23454 3789999999999987543
No 481
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=87.87 E-value=0.058 Score=58.28 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=30.6
Q ss_pred CcccccCCccccce------EEE---cCCCCeEEEEecCCccccccccccCCCC
Q 006778 569 IPELVNLPEYAGPE------YVP---DEKNQLKLQINAQNCLHCKACDIKDPKQ 613 (631)
Q Consensus 569 ~~~~~~~~~~~~p~------~~~---~~~~~~~~~~~~~~c~~c~tC~i~~p~~ 613 (631)
.|..|.....+||. ..| -++-.....-+...|+|||.|-..||..
T Consensus 366 sCi~C~~C~d~CP~~Llp~ql~~~a~~~~~~e~~~~~l~dCIECg~Ca~vCPs~ 419 (529)
T COG4656 366 SCIRCSLCADACPVNLLPQQLYWFAKGEQHDEEEEHNLLDCIECGACAYVCPSN 419 (529)
T ss_pred ccccHHHHHHhCccccCHHHhhHHhhhhhhhHHHHHHhhhhhhhCcchhcCCCC
Confidence 78888888899999 111 1110011223688999999999999954
No 482
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=87.86 E-value=0.74 Score=42.79 Aligned_cols=31 Identities=35% Similarity=0.358 Sum_probs=28.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEe
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVE 143 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlE 143 (631)
...|+|||||..|+.-|..|.+. |.+|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~------ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDT------GAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEc
Confidence 45799999999999999999998 99999995
No 483
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=87.71 E-value=0.38 Score=40.47 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=42.5
Q ss_pred cCCCCcccccCCccccce--EEEcCCC--CeEEEEecCCccccccccccCCCCCcceeCCC
Q 006778 565 RDPKIPELVNLPEYAGPE--YVPDEKN--QLKLQINAQNCLHCKACDIKDPKQNIKWTVPE 621 (631)
Q Consensus 565 ~~~~~~~~~~~~~~~~p~--~~~~~~~--~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~p~ 621 (631)
.+.+.|..|..-+-.||. .....+. ...+.|+...|+.|+.|.-.||.+.|++..-.
T Consensus 26 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~ 86 (99)
T COG1145 26 IDAEKCIGCGLCVKVCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSIAEEL 86 (99)
T ss_pred eCccccCCCCCchhhCCHHHhhcccccCccceEEEccccCccccchHhhCCcCCeehhhcc
Confidence 366778888777889999 2212111 24789999999999999999999998765443
No 484
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=87.59 E-value=0.32 Score=48.56 Aligned_cols=52 Identities=23% Similarity=0.179 Sum_probs=40.3
Q ss_pred CCCCcccccCCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCcceeC
Q 006778 566 DPKIPELVNLPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 619 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~~ 619 (631)
|++.|..|..-.-.|+- .++.+++ .+.+|-.-|--||+|-+.||...|+-+.
T Consensus 67 ~~e~C~~CG~C~~vC~f~Ai~~~~~~--~~~~~~~lC~GCgaC~~~CP~~AI~~~~ 120 (284)
T COG1149 67 DPEKCIRCGKCAEVCRFGAIVVLPGG--KPVLNPDLCEGCGACSIVCPEPAIEEEP 120 (284)
T ss_pred ChhhccccCcHHHhCCCCeEEEcCCC--ceecCcccccCcccceeeCCCccccccc
Confidence 56778888766666776 4444444 6889999999999999999999887554
No 485
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.53 E-value=0.69 Score=49.92 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
.-.|+|+|+|+.|+.+|..|+.. |.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCh
Confidence 45799999999999999999998 99999999865
No 486
>PRK13795 hypothetical protein; Provisional
Probab=87.37 E-value=0.25 Score=56.66 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=40.4
Q ss_pred EecCCCCcccccCCccccce--EEEcCCCCeEEEEecCCccccccccccCCCCCcc
Q 006778 563 RLRDPKIPELVNLPEYAGPE--YVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 616 (631)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~ 616 (631)
.+.+++.|..|..-.-.||. ...++ +.+.+.||.+.|.+|+.|.-.||...|.
T Consensus 576 ~v~~~~~C~~Cg~C~~~CP~~ai~~~~-~~~~~~id~~~C~~Cg~C~~aCP~~a~~ 630 (636)
T PRK13795 576 LLRRAAECVGCGVCVGACPTGAIRIEE-GKRKISVDEEKCIHCGKCTEVCPVVKYK 630 (636)
T ss_pred EEEccccCCCHhHHHHhCCcccEEeec-CCceEEechhhcCChhHHHhhcCCCeeE
Confidence 35578889988766778996 33332 2235889999999999999999988763
No 487
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=87.13 E-value=0.18 Score=27.09 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=12.8
Q ss_pred ccccccccccCCCC
Q 006778 600 CLHCKACDIKDPKQ 613 (631)
Q Consensus 600 c~~c~tC~i~~p~~ 613 (631)
|.+|+.|...||.+
T Consensus 1 C~~C~~C~~~Cp~~ 14 (15)
T PF12798_consen 1 CTGCGACVEVCPTG 14 (15)
T ss_pred CCCchHHHHHhcCC
Confidence 88999999999976
No 488
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=87.11 E-value=0.92 Score=47.30 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
..|+|||+|-.|...|..|++. |.+|+++.|+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCC
Confidence 4699999999999999999998 99999999864
No 489
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=87.09 E-value=0.4 Score=58.66 Aligned_cols=55 Identities=22% Similarity=0.393 Sum_probs=40.1
Q ss_pred ecCCCCcccccCCccccce--EEE---c--C------------------CC-CeEEEEecCCccccccccccCCCC--Cc
Q 006778 564 LRDPKIPELVNLPEYAGPE--YVP---D--E------------------KN-QLKLQINAQNCLHCKACDIKDPKQ--NI 615 (631)
Q Consensus 564 ~~~~~~~~~~~~~~~~~p~--~~~---~--~------------------~~-~~~~~~~~~~c~~c~tC~i~~p~~--~i 615 (631)
+.+++.|..|......||. ... + + .+ ..+++++.+.|..||.|.-.||.+ .|
T Consensus 679 ~~~~~~Ci~Cg~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~CP~~~~Al 758 (1165)
T TIGR02176 679 VWVPDNCIQCNQCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDICPAKEKAL 758 (1165)
T ss_pred eeccccCCCccchHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhhcCCCCccc
Confidence 3478889999988899998 111 0 0 00 124789999999999999999995 56
Q ss_pred cee
Q 006778 616 KWT 618 (631)
Q Consensus 616 ~w~ 618 (631)
+++
T Consensus 759 ~m~ 761 (1165)
T TIGR02176 759 VMQ 761 (1165)
T ss_pred ccc
Confidence 544
No 490
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=87.02 E-value=0.81 Score=47.54 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
.+|+|||+|..|...|..|++. |.+|+++.|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEech
Confidence 4699999999999999999998 99999999964
No 491
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=86.94 E-value=0.27 Score=46.21 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=37.2
Q ss_pred CCCCcccccCCccccceE--E--Ec--CC---C-CeEEEEecCCccccccccccCCCCCcce
Q 006778 566 DPKIPELVNLPEYAGPEY--V--PD--EK---N-QLKLQINAQNCLHCKACDIKDPKQNIKW 617 (631)
Q Consensus 566 ~~~~~~~~~~~~~~~p~~--~--~~--~~---~-~~~~~~~~~~c~~c~tC~i~~p~~~i~w 617 (631)
+.+.|..|..-.-+||.. . +. .. . ...+.+|...|..||.|.-.||.+.|..
T Consensus 57 ~~~~Ci~Cg~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~ 118 (167)
T CHL00014 57 EFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSM 118 (167)
T ss_pred ccccCCCcCcHHHhCCCCCccccccccccccccccccccCCCCcCcCccchHhhcCcCceec
Confidence 456788887777789971 1 11 00 0 1246788899999999999999998864
No 492
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=86.55 E-value=0.35 Score=35.61 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=8.7
Q ss_pred EEEEecCCccccccccccCCC
Q 006778 592 KLQINAQNCLHCKACDIKDPK 612 (631)
Q Consensus 592 ~~~~~~~~c~~c~tC~i~~p~ 612 (631)
++.||.+.|+.||.|.-.||.
T Consensus 1 ki~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 1 KIVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp -----TT------TTGGG-TT
T ss_pred CCccCcccCcCCcChHHHccc
Confidence 468999999999999999998
No 493
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=86.51 E-value=8.1 Score=45.44 Aligned_cols=38 Identities=24% Similarity=0.075 Sum_probs=29.9
Q ss_pred CCEEEEccCCccCCCCCCcchHHHHHHHHHHHHHHhcccCC
Q 006778 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 455 (631)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~Al~sa~~aA~~l~~~l~~ 455 (631)
++++++|++.+...| .-++-|++||..+|+.|.+.+..
T Consensus 644 GRL~FAGEaTs~~~~---GtVhGAi~SGlRAA~eIl~~~~~ 681 (808)
T PLN02328 644 GRVFFAGEATNKQYP---ATMHGAFLSGMREAANILRVARR 681 (808)
T ss_pred CCEEEEEhhHhCCCC---eEhHHHHHHHHHHHHHHHHHHhh
Confidence 589999999765433 46789999999999998876543
No 494
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=86.47 E-value=0.94 Score=44.00 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=29.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEee
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEK 144 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk 144 (631)
...|+|||||-.|...|..|.+. |.+|+|+++
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~ 41 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY------GAHIVVISP 41 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEcC
Confidence 45799999999999999999998 999999975
No 495
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=86.12 E-value=0.87 Score=48.10 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCCC
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~~ 147 (631)
.|.|||.|-.||+.|..|++. |++|+.+|..+.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~------GHeVv~vDid~~ 34 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL------GHEVVCVDIDES 34 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc------CCeEEEEeCCHH
Confidence 589999999999999999999 999999998753
No 496
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.04 E-value=0.91 Score=46.71 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 109 DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
.|.|||+|..|.+.|..|++. |.+|+++|+.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCH
Confidence 599999999999999999998 99999999765
No 497
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=85.98 E-value=1.3 Score=39.94 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhcccCCCCCe-EEEEeeCC
Q 006778 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGA 146 (631)
Q Consensus 107 ~~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~-V~vlEk~~ 146 (631)
...|+|||+|-+|-+++..|++. |.+ |+|+-|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCH
Confidence 46799999999999999999999 887 99999864
No 498
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.79 E-value=1 Score=46.48 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhcccCCCCCeEEEEeeCC
Q 006778 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (631)
Q Consensus 108 ~DVvIVGgG~aGL~aA~~La~~~~~~~~G~~V~vlEk~~ 146 (631)
..|.|||+|..|...|..|++. |.+|+++|+.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCH
Confidence 4699999999999999999999 99999999875
No 499
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=85.71 E-value=0.5 Score=40.67 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=39.6
Q ss_pred CCccCCCCCCceEecCCCCccc-ccCC-ccccceEEEcCCCCeEEEEecCCccccccccccCCCCCccee
Q 006778 551 NTNHEHDQPAHLRLRDPKIPEL-VNLP-EYAGPEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 551 ~~~~~~~~~~h~~~~~~~~~~~-~~~~-~~~~p~~~~~~~~~~~~~~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
|...++...-|+++.+.. +.. .-+. .+..|+..+ ......|+...|+.|+.|...||...|.|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~-p~~~~~~g~~~~n~e~~~---~~~~p~i~~~~Ci~C~~C~~~CP~~ai~~~ 71 (105)
T PRK09623 6 GEKKEEAKKIVLKSVDEY-PEAPISLGTTLSNFTGDW---RTFMPVVDESKCVKCYICWKFCPEPAIYIK 71 (105)
T ss_pred hcccccccccCchhhhcC-CCccccccccccCccccc---cceeEEECcccCccccchhhhCCHhheEec
Confidence 455566777888876521 111 1111 123333111 113577899999999999999999988875
No 500
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=85.67 E-value=0.41 Score=47.68 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=39.3
Q ss_pred CceEecCCCCcccccCCccccce------EEEcCCC-CeEEE-------EecCCccccccccccCCCCCccee
Q 006778 560 AHLRLRDPKIPELVNLPEYAGPE------YVPDEKN-QLKLQ-------INAQNCLHCKACDIKDPKQNIKWT 618 (631)
Q Consensus 560 ~h~~~~~~~~~~~~~~~~~~~p~------~~~~~~~-~~~~~-------~~~~~c~~c~tC~i~~p~~~i~w~ 618 (631)
+.+.+ |++.|..|..-+.+||. +.....+ ...+. ++...|++||.|.-.||++.|.+.
T Consensus 139 ~~i~~-d~~kCi~Cg~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~ 210 (234)
T PRK07569 139 PRFGI-DHNRCVLCTRCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRK 210 (234)
T ss_pred CcEEe-ehhhCcCccHHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEec
Confidence 34544 78999998877889995 2111111 11222 235689999999999999999754
Done!