BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006780
         (631 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AIH|A Chain A, Human Os-9 Mrh Domain Complexed With Alpha3,Alpha6-Man5
 pdb|3AIH|B Chain B, Human Os-9 Mrh Domain Complexed With Alpha3,Alpha6-Man5
          Length = 124

 Score = 42.0 bits (97), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 553 YHIMLFSNGDKC-WNGPDRSMKVRLRC----GLKNEVTD-VDEPSRCEYVALLYTPAVC 605
           YH   + NG KC  NG  R  +VR  C    G+  +  D VDEP  C YV  + TP +C
Sbjct: 65  YHSQTYGNGSKCDLNGRPREAEVRFLCDEGAGISGDYIDRVDEPLSCSYVLTIRTPRLC 123


>pdb|2P12|A Chain A, Crystal Structure Of Protein Of Unknown Function Duf402
           From Rhodococcus Sp. Rha1
 pdb|2P12|B Chain B, Crystal Structure Of Protein Of Unknown Function Duf402
           From Rhodococcus Sp. Rha1
          Length = 176

 Score = 31.6 bits (70), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 550 EDSY-HIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYT 601
           +D Y  I  F+ GD  W   D  + + +R G   E+ DVDE        LL T
Sbjct: 84  QDHYVDIGTFTRGDDVWKSEDHYLDLVVRTGRDTELLDVDELXEAHTTGLLDT 136


>pdb|3GON|A Chain A, Streptococcus Pneumoniae Phosphomevalonate Kinase In
           Complex With Phosphomevalonate And Amppnp
          Length = 335

 Score = 30.8 bits (68), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 240 ESFDQGKAENVDEEPATEAKQI-GTSQNLGTPVNGVEQHATEEMEQSASSRSKDGSSTVP 298
           E+ +QGK+E + E+    +K + G S ++ TP+    + A+++++  A S    G     
Sbjct: 241 EALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGI 300

Query: 299 ETSSDAES 306
             S DA+S
Sbjct: 301 ALSFDAQS 308


>pdb|1K47|A Chain A, Crystal Structure Of The Streptococcus Pneumoniae
           Phosphomevalonate Kinase (Pmk)
 pdb|1K47|B Chain B, Crystal Structure Of The Streptococcus Pneumoniae
           Phosphomevalonate Kinase (Pmk)
 pdb|1K47|C Chain C, Crystal Structure Of The Streptococcus Pneumoniae
           Phosphomevalonate Kinase (Pmk)
 pdb|1K47|D Chain D, Crystal Structure Of The Streptococcus Pneumoniae
           Phosphomevalonate Kinase (Pmk)
 pdb|1K47|E Chain E, Crystal Structure Of The Streptococcus Pneumoniae
           Phosphomevalonate Kinase (Pmk)
 pdb|1K47|F Chain F, Crystal Structure Of The Streptococcus Pneumoniae
           Phosphomevalonate Kinase (Pmk)
          Length = 337

 Score = 30.8 bits (68), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 240 ESFDQGKAENVDEEPATEAKQI-GTSQNLGTPVNGVEQHATEEMEQSASSRSKDGSSTVP 298
           E+ +QGK+E + E+    +K + G S ++ TP+    + A+++++  A S    G     
Sbjct: 243 EALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGI 302

Query: 299 ETSSDAES 306
             S DA+S
Sbjct: 303 ALSFDAQS 310


>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
 pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
 pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
 pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
 pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
 pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
          Length = 772

 Score = 30.4 bits (67), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 520 NKYVYKVCPYKKATQEEGHSTTR----LGSWDKFEDSYHIMLFSNGDKC 564
           N Y+ +  P  K  QE+G+   R    L  WDK++    I  F+N D C
Sbjct: 347 NPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDAC 395


>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
 pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
 pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
 pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
 pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
 pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
          Length = 773

 Score = 30.4 bits (67), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 520 NKYVYKVCPYKKATQEEGHSTTR----LGSWDKFEDSYHIMLFSNGDKC 564
           N Y+ +  P  K  QE+G+   R    L  WDK++    I  F+N D C
Sbjct: 347 NPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDAC 395


>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
           Intermediate
 pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
           Intermediate
 pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
           Intermediate
 pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
           Intermediate
 pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
           Intermediate
 pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
           Intermediate
          Length = 778

 Score = 30.4 bits (67), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 520 NKYVYKVCPYKKATQEEGHSTTR----LGSWDKFEDSYHIMLFSNGDKC 564
           N Y+ +  P  K  QE+G+   R    L  WDK++    I  F+N D C
Sbjct: 347 NPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDAC 395


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.127    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,281,157
Number of Sequences: 62578
Number of extensions: 706541
Number of successful extensions: 1405
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1396
Number of HSP's gapped (non-prelim): 25
length of query: 631
length of database: 14,973,337
effective HSP length: 105
effective length of query: 526
effective length of database: 8,402,647
effective search space: 4419792322
effective search space used: 4419792322
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 54 (25.4 bits)