BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006780
(631 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O08795|GLU2B_MOUSE Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1
Length = 521
Score = 116 bits (291), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 81/141 (57%), Gaps = 7/141 (4%)
Query: 468 DAAR-VRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKV 526
DAA+ R +++E L +++ I SL Q++ +FGP EF Y C+E N+YVY++
Sbjct: 361 DAAQEARSKFEEVERSLKEMEESIRSLEQEISFDFGPSGEFAYLYSQCYELTTNEYVYRL 420
Query: 527 CPYKKATQEEGH--STTRLGSWDKF----EDSYHIMLFSNGDKCWNGPDRSMKVRLRCGL 580
CP+K +Q+ H S T LG+W + D + M + G CW GP+RS VRL CG
Sbjct: 421 CPFKLVSQKPKHGGSPTSLGTWGSWAGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGK 480
Query: 581 KNEVTDVDEPSRCEYVALLYT 601
+ VT EPSRCEY+ L T
Sbjct: 481 ETVVTSTTEPSRCEYLMELMT 501
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 35/202 (17%)
Query: 42 GISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEP--------------- 86
G+S + ++Y+ S C DG+ Q+NDDYCDC DG+DEP
Sbjct: 22 GVSLSNHHFYE-ESKPFTCLDGTATIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNT 80
Query: 87 -----------------DCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLL 129
DCCDG+DEY+ C NTC E G+ ++ L++ +EG L
Sbjct: 81 GYKPLYILSSRVNDGVCDCCDGTDEYNSGTVCENTCREKGRKEKESLQQLAEVTREGFRL 140
Query: 130 RKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREKEEKE 189
+K IE+ K + +++L L+ +K L+ V+ L+ KE+ E+ E++ + Q K +E
Sbjct: 141 KKILIEEWKTAREEKQSKLLELQAGKKSLEDQVETLRAAKEEAERPEKEAKDQHRKLWEE 200
Query: 190 RKEAEENERKEKSESGEKAMQE 211
++ A + R++ E A QE
Sbjct: 201 QQAAAKARREQ--ERAASAFQE 220
>sp|P14314|GLU2B_HUMAN Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=2
Length = 528
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Query: 468 DAAR-VRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKV 526
DAA+ R +++E+ L ++ I +L Q++ +FGP EF Y C+E N+YVY++
Sbjct: 368 DAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNEYVYRL 427
Query: 527 CPYKKATQEE--GHSTTRLGSWDKF----EDSYHIMLFSNGDKCWNGPDRSMKVRLRCGL 580
CP+K +Q+ G S T LG+W + D + M + G CW GP+RS VRL CG
Sbjct: 428 CPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGK 487
Query: 581 KNEVTDVDEPSRCEYVALL 599
+ VT EPSRCEY+ L
Sbjct: 488 ETMVTSTTEPSRCEYLMEL 506
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 33/191 (17%)
Query: 42 GISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEP--------------- 86
G+S + ++Y S C DGS Q+NDDYCDC DG+DEP
Sbjct: 22 GVSLTNHHFYD-ESKPFTCLDGSATIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNT 80
Query: 87 -----------------DCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLL 129
DCCDG+DEY+ V C NTC E G+ R+ L++ +EG L
Sbjct: 81 GYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKGRKERESLQQMAEVTREGFRL 140
Query: 130 RKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREKEEKE 189
+K IE K+ + + +L L+ +K L+ V+ L+ KE+ EK E + + Q +K +E
Sbjct: 141 KKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEMLRTVKEEAEKPEREAKEQHQKLWEE 200
Query: 190 RKEAEENERKE 200
+ A + ++++
Sbjct: 201 QLAAAKAQQEQ 211
>sp|Q28034|GLU2B_BOVIN Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH PE=2 SV=1
Length = 533
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 33/157 (21%)
Query: 42 GISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEP--------------- 86
G+S + ++Y S C DGS Q+NDDYCDC DG+DEP
Sbjct: 21 GVSLTNHHFYD-ESKPFTCLDGSASIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNT 79
Query: 87 -----------------DCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLL 129
DCCDG+DEY+ + C NTC E G+ R+ L++ +EG L
Sbjct: 80 GYKALYISSRWVNDGVCDCCDGTDEYNSGIVCENTCKEKGRKERETLQQMAEVTREGFRL 139
Query: 130 RKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLK 166
+K IE K+ + + +L L+ +K L+ V+ L+
Sbjct: 140 KKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEVLR 176
>sp|Q9USH8|GLU2B_SCHPO Glucosidase 2 subunit beta OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=gtb1 PE=1 SV=1
Length = 506
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Query: 522 YVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLK 581
Y YKV Y+ Q+ + LG++ E +++ + NG CWNGP RS V + CG++
Sbjct: 395 YTYKVVFYENVFQD----SILLGNFASQEG--NVLKYENGQSCWNGPHRSAIVTVECGVE 448
Query: 582 NEVTDVDEPSRCEYVALLYTPAVCSEEKLQE 612
NE+ V E +CEY+ + +PA CS ++L++
Sbjct: 449 NEIVSVLEAQKCEYLIKMKSPAACSPDQLKQ 479
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 87/207 (42%), Gaps = 51/207 (24%)
Query: 8 FRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISPQDENYYKT-SSNTIKCKDGSKK 66
F Y + LL S + NAA+ L G++ + YK + KC K
Sbjct: 3 FSQWYTLTAPLLISSLYTV---NAANDL-----RGVASDKSDLYKPDAKGNWKCLGSDKL 54
Query: 67 FAKTQLNDDYCDCPDGTDEP--------------------------------DCCDGSDE 94
+ Q+NDDYCDCPDG+DEP DCCDGSDE
Sbjct: 55 ISFNQVNDDYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVCDCCDGSDE 114
Query: 95 YDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNE 154
+KCPNTC + K ++ +AT +E L K ++ +Q ++ + +K
Sbjct: 115 --SLIKCPNTCAQ-------KAREYLATLEEHNRLVKNGLKIREQWALESAKKTDEVKAR 165
Query: 155 EK-ILKGLVQQLKERKEQIEKAEEKER 180
K I LV E+ + EK E+ +R
Sbjct: 166 YKEISDSLVAVSAEKTQLSEKVEKMKR 192
>sp|Q6S5C2|GNPTG_MOUSE N-acetylglucosamine-1-phosphotransferase subunit gamma OS=Mus
musculus GN=Gnptg PE=2 SV=1
Length = 307
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
Query: 502 GPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTR-------LGSWDKFE---D 551
GP + G CF ++ Y Y+ CP+ TQ E T R LG W ++E +
Sbjct: 60 GP-LHLFRLAGKCFSLVESTYKYEFCPFHNVTQHE--QTFRWNAYSGILGIWHEWEIINN 116
Query: 552 SYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKL 610
++ M ++GD C + R KV L CG N + V EPS C Y TP VC L
Sbjct: 117 TFKGMWMTDGDSC-HSRSRQSKVELTCGKINRLAHVSEPSTCVYALTFETPLVCHPHSL 174
>sp|Q58CS8|GNPTG_BOVIN N-acetylglucosamine-1-phosphotransferase subunit gamma OS=Bos
taurus GN=GNPTG PE=1 SV=4
Length = 306
Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 512 GHCFESKQNKYVYKVCPYKKATQEEGHSTTR-------LGSWDKFE---DSYHIMLFSNG 561
G CF ++ Y Y++CP+ TQ E T R LG W ++E +++ M +G
Sbjct: 69 GKCFSLVESTYKYELCPFHNVTQHE--QTFRWNAYSGILGIWHEWEITNNTFRGMWMRDG 126
Query: 562 DKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKL-------QELQ 614
D C R KV L CG N + V EPS C Y TP VC L LQ
Sbjct: 127 DAC-QSRSRQSKVELTCGKSNRLAHVSEPSTCVYALTFETPLVCHPHSLLVYPTLPAALQ 185
Query: 615 HKLDEL 620
+ D+L
Sbjct: 186 QRWDQL 191
>sp|Q9UJJ9|GNPTG_HUMAN N-acetylglucosamine-1-phosphotransferase subunit gamma OS=Homo
sapiens GN=GNPTG PE=1 SV=1
Length = 305
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 26/149 (17%)
Query: 506 EFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTR-------LGSWDKFE---DSYHI 555
+ G CF ++ Y Y+ CP+ TQ E T R LG W ++E +++
Sbjct: 63 HLFRLSGKCFSLVESTYKYEFCPFHNVTQHE--QTFRWNAYSGILGIWHEWEIANNTFTG 120
Query: 556 MLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKL----- 610
M +GD C R KV L CG N + V EPS C Y TP VC L
Sbjct: 121 MWMRDGDAC-RSRSRQSKVELACGKSNRLAHVSEPSTCVYALTFETPLVCHPHALLVYPT 179
Query: 611 --QELQHKLDELNK------KQPQHHDEL 631
+ LQ + D++ + PQ H++L
Sbjct: 180 LPEALQRQWDQVEQDLADELITPQGHEKL 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.126 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 253,182,724
Number of Sequences: 539616
Number of extensions: 12335419
Number of successful extensions: 169974
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2281
Number of HSP's successfully gapped in prelim test: 5348
Number of HSP's that attempted gapping in prelim test: 68424
Number of HSP's gapped (non-prelim): 42134
length of query: 631
length of database: 191,569,459
effective HSP length: 124
effective length of query: 507
effective length of database: 124,657,075
effective search space: 63201137025
effective search space used: 63201137025
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 64 (29.3 bits)