Query 006780
Match_columns 631
No_of_seqs 266 out of 639
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 08:46:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aih_A Protein OS-9; beta barr 99.9 2.7E-27 9.2E-32 216.9 9.5 96 511-606 2-124 (124)
2 2rl8_A Cation-dependent mannos 99.6 9.6E-16 3.3E-20 145.5 9.6 102 505-606 24-154 (154)
3 2kva_A Cation-independent mann 99.4 2.2E-12 7.5E-17 120.1 11.7 105 501-606 22-148 (148)
4 1gp0_A Cation-independent mann 99.2 7.8E-12 2.7E-16 116.3 7.3 86 520-607 39-141 (143)
5 2lla_A Mannose-6-phosphate/ins 98.7 8.3E-08 2.8E-12 88.3 10.9 70 539-608 60-139 (140)
6 2l21_A Cation-independent mann 98.6 1.7E-07 5.9E-12 88.4 9.1 90 519-608 38-145 (154)
7 2l2g_A IGF2R domain 11; insuli 98.4 3.8E-07 1.3E-11 85.9 8.2 71 538-608 62-142 (151)
8 1q25_A CI, cation-independent 98.2 4.7E-06 1.6E-10 90.4 10.1 66 540-606 357-432 (432)
9 2fcw_B LDL receptor, low-densi 98.1 2.2E-06 7.6E-11 72.7 4.2 31 55-86 5-35 (80)
10 1jrf_A TVA LDL-A module, subgr 98.0 1.4E-06 4.7E-11 66.7 1.1 34 55-88 7-44 (47)
11 2fyj_A Low-density lipoprotein 98.0 4E-06 1.4E-10 71.3 3.9 30 55-85 7-36 (82)
12 2kny_A LRP-1, linker, APO-E; l 97.8 1.7E-06 5.9E-11 73.5 -1.0 40 55-94 11-55 (80)
13 2v5o_A Cation-independent mann 97.8 3.5E-05 1.2E-09 87.5 7.9 86 520-607 39-141 (627)
14 2jm4_A Relaxin receptor 1; LDL 97.7 2.7E-05 9.2E-10 58.5 3.5 34 55-88 9-42 (43)
15 1cr8_A Protein (LOW density li 97.7 2.9E-05 9.8E-10 58.1 3.5 35 55-89 6-40 (42)
16 2i1p_A Low-density lipoprotein 97.6 1.3E-05 4.6E-10 61.6 1.0 35 55-89 9-43 (48)
17 1q25_A CI, cation-independent 97.5 0.00013 4.3E-09 79.2 8.1 71 539-609 203-284 (432)
18 3dpr_E LDL-receptor class A 3; 97.5 4.4E-05 1.5E-09 56.1 3.0 36 55-90 3-39 (39)
19 2v5o_A Cation-independent mann 97.3 0.00033 1.1E-08 79.5 8.0 70 540-609 547-622 (627)
20 2knx_A Prolow-density lipoprot 97.1 0.00017 5.9E-09 56.0 2.2 34 55-88 9-42 (50)
21 1j8e_A Low-density lipoprotein 97.0 0.00022 7.6E-09 53.7 2.1 31 55-86 7-37 (44)
22 1ajj_A LR5, low-density lipopr 96.9 0.00046 1.6E-08 50.1 2.8 33 55-88 4-36 (37)
23 2fyj_A Low-density lipoprotein 96.8 0.00069 2.4E-08 57.5 3.1 33 55-88 48-80 (82)
24 3a7q_B Low-density lipoprotein 96.7 0.00089 3E-08 50.4 3.3 33 55-88 10-42 (44)
25 1k7b_A Subgroup A ROUS sarcoma 96.7 0.00067 2.3E-08 51.7 2.4 34 55-88 9-46 (47)
26 2fcw_B LDL receptor, low-densi 96.5 0.00095 3.3E-08 56.5 2.2 30 55-85 44-73 (80)
27 1n7d_A LDL receptor, low-densi 96.4 0.0013 4.3E-08 75.1 3.2 31 55-85 49-80 (699)
28 1d2l_A Lipoprotein receptor re 96.0 0.0041 1.4E-07 47.1 3.1 32 55-87 8-39 (45)
29 1n7d_A LDL receptor, low-densi 95.6 0.0049 1.7E-07 70.3 3.3 31 55-86 90-120 (699)
30 3m0c_C LDL receptor, low-densi 95.2 0.0035 1.2E-07 72.9 0.0 31 56-86 68-99 (791)
31 2m0p_A Low-density lipoprotein 95.0 0.0061 2.1E-07 47.8 1.0 32 55-87 9-40 (52)
32 3m0c_C LDL receptor, low-densi 93.1 0.017 5.8E-07 67.2 0.0 30 56-86 109-138 (791)
33 2xrc_A Human complement factor 92.8 0.045 1.5E-06 61.1 2.9 30 56-86 207-236 (565)
34 2gtl_M Hemoglobin linker chain 90.3 0.14 4.8E-06 51.0 3.1 32 55-86 56-88 (217)
35 2gtl_N Extracellular hemoglobi 87.2 0.29 1E-05 48.7 2.9 43 55-97 55-104 (220)
36 3oja_B Anopheles plasmodium-re 85.1 33 0.0011 37.5 18.3 33 46-79 346-383 (597)
37 2gtl_O Extracellular hemoglobi 81.3 0.4 1.4E-05 47.6 0.9 35 55-89 57-92 (215)
38 2kny_A LRP-1, linker, APO-E; l 77.4 0.11 3.8E-06 43.8 -3.9 44 86-130 33-78 (80)
39 1m1j_B Fibrinogen beta chain; 69.3 1E+02 0.0034 33.9 15.7 76 88-170 70-152 (464)
40 3ojy_B Complement component C8 68.6 2.8 9.6E-05 46.6 3.5 32 56-88 69-101 (537)
41 3ojy_A Complement component C8 68.4 2.7 9.2E-05 47.0 3.3 34 56-90 68-102 (554)
42 1gmj_A ATPase inhibitor; coile 67.5 37 0.0013 28.9 9.3 41 130-170 35-75 (84)
43 1m1j_C Fibrinogen gamma chain; 54.5 2E+02 0.0067 31.0 14.6 21 87-109 7-27 (409)
44 2xrc_A Human complement factor 53.0 7 0.00024 43.4 3.2 34 55-89 243-276 (565)
45 3vkg_A Dynein heavy chain, cyt 47.6 2.2E+02 0.0076 38.5 15.9 11 521-531 2423-2433(3245)
46 3mq7_A Bone marrow stromal ant 47.3 1.6E+02 0.0055 26.5 11.3 21 103-123 21-41 (121)
47 3ghg_A Fibrinogen alpha chain; 44.8 3.3E+02 0.011 30.3 14.4 34 79-116 27-60 (562)
48 3ghg_B Fibrinogen beta chain; 43.9 3.5E+02 0.012 29.7 14.4 46 87-139 64-109 (461)
49 3t5o_A Complement component C6 43.8 9.4 0.00032 45.0 2.4 34 56-90 121-154 (913)
50 1t2k_D Cyclic-AMP-dependent tr 41.2 1.3E+02 0.0043 23.5 9.5 38 129-166 19-56 (61)
51 3mq9_A Bone marrow stromal ant 40.2 2.5E+02 0.0085 29.6 12.7 15 144-158 402-416 (471)
52 3mq9_A Bone marrow stromal ant 40.2 1.4E+02 0.0049 31.6 10.8 29 137-165 402-430 (471)
53 3qne_A Seryl-tRNA synthetase, 38.4 1.6E+02 0.0055 32.4 10.9 16 214-229 106-121 (485)
54 3ni0_A Bone marrow stromal ant 35.1 2.3E+02 0.0077 24.7 11.0 20 102-121 13-32 (99)
55 2dq0_A Seryl-tRNA synthetase; 34.1 1.9E+02 0.0066 31.3 10.7 28 139-166 38-65 (455)
56 2yy0_A C-MYC-binding protein; 32.7 78 0.0027 24.5 5.3 33 466-498 18-50 (53)
57 2wt7_A Proto-oncogene protein 32.1 1.8E+02 0.0063 22.8 9.9 35 130-164 21-55 (63)
58 1wle_A Seryl-tRNA synthetase; 31.5 5.5E+02 0.019 28.1 14.8 29 139-167 77-105 (501)
59 3vkg_A Dynein heavy chain, cyt 31.4 5.3E+02 0.018 35.0 15.7 40 106-145 1905-1944(3245)
60 1m1j_A Fibrinogen alpha subuni 31.3 2.4E+02 0.0083 30.9 10.6 97 75-176 35-152 (491)
61 3ghg_C Fibrinogen gamma chain; 30.7 3.3E+02 0.011 29.4 11.6 21 87-109 7-27 (411)
62 1deq_A Fibrinogen (alpha chain 30.5 5.3E+02 0.018 27.6 13.3 140 88-228 48-217 (390)
63 2ku3_A Bromodomain-containing 29.5 29 0.001 28.3 2.5 30 66-95 8-42 (71)
64 3hnw_A Uncharacterized protein 28.6 3.4E+02 0.012 24.7 10.7 29 142-170 78-106 (138)
65 3mq7_A Bone marrow stromal ant 28.3 3.3E+02 0.011 24.5 13.9 14 101-114 23-36 (121)
66 1hjb_A Ccaat/enhancer binding 28.1 2.8E+02 0.0095 23.6 10.0 19 147-165 44-62 (87)
67 1kd8_A GABH AIV, GCN4 acid bas 28.0 1.3E+02 0.0046 21.7 5.3 28 143-170 5-32 (36)
68 3hnw_A Uncharacterized protein 26.6 3.7E+02 0.013 24.5 10.8 34 137-170 80-113 (138)
69 2jmi_A Protein YNG1, ING1 homo 26.2 26 0.00089 30.1 1.7 39 73-111 25-79 (90)
70 1ses_A Seryl-tRNA synthetase; 25.0 3.6E+02 0.012 28.7 10.8 14 214-227 99-112 (421)
71 1go4_E MAD1 (mitotic arrest de 24.6 97 0.0033 27.2 5.0 33 467-499 12-44 (100)
72 3nmd_A CGMP dependent protein 24.3 2E+02 0.0069 23.8 6.6 17 144-160 45-61 (72)
73 3lay_A Zinc resistance-associa 24.2 4.6E+02 0.016 24.8 10.2 7 148-154 115-121 (175)
74 3o36_A Transcription intermedi 24.1 29 0.001 32.7 1.8 21 73-94 3-24 (184)
75 1kd8_B GABH BLL, GCN4 acid bas 23.5 1.3E+02 0.0046 21.7 4.6 26 144-169 6-31 (36)
76 1nkp_B MAX protein, MYC proto- 22.8 2.2E+02 0.0074 23.3 6.8 10 119-128 13-22 (83)
77 1a92_A Delta antigen; leucine 22.8 1.1E+02 0.0039 23.4 4.4 27 470-496 10-36 (50)
78 2zqm_A Prefoldin beta subunit 22.6 2.2E+02 0.0076 24.2 7.1 20 149-168 73-92 (117)
79 1xwh_A Autoimmune regulator; P 22.2 40 0.0014 26.8 1.9 26 69-95 3-29 (66)
80 2wvr_A Geminin; DNA replicatio 21.9 5.5E+02 0.019 25.2 10.2 21 148-168 124-144 (209)
81 1rtm_1 Mannose-binding protein 21.8 96 0.0033 27.3 4.7 47 472-523 2-48 (149)
82 3lss_A Seryl-tRNA synthetase; 21.5 7.1E+02 0.024 27.2 12.3 15 214-228 139-153 (484)
83 3iv1_A Tumor susceptibility ge 21.4 3.6E+02 0.012 22.6 8.8 36 135-170 35-70 (78)
84 3oja_A Leucine-rich immune mol 21.4 6.1E+02 0.021 26.7 11.7 48 123-170 412-459 (487)
85 2yy0_A C-MYC-binding protein; 20.1 1.7E+02 0.0057 22.6 5.0 24 147-170 20-43 (53)
86 1t3j_A Mitofusin 1; coiled coi 20.0 4.3E+02 0.015 22.9 8.1 10 206-215 85-94 (96)
No 1
>3aih_A Protein OS-9; beta barrel, lectin, sugar binding protein; HET: BMA MAN; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.7e-27 Score=216.88 Aligned_cols=96 Identities=29% Similarity=0.618 Sum_probs=87.2
Q ss_pred ccceEEeecCeEEEEEecCCceeecc------CCceeEeecccc---cC------------CCeeEEEecCCccC-CCCC
Q 006780 511 YGHCFESKQNKYVYKVCPYKKATQEE------GHSTTRLGSWDK---FE------------DSYHIMLFSNGDKC-WNGP 568 (631)
Q Consensus 511 ~~~C~~~~~g~Y~YelC~~~~v~Q~~------g~~~~~LG~f~~---~~------------~~~~~m~Y~~G~~C-wNGp 568 (631)
.+.|+....|||+|+|||++.|+|+| ++..++||+|.+ |. ..|++|.|++|+.| ||||
T Consensus 2 ~~~C~~~~~g~wtYe~C~~k~v~Q~h~~~~~~~~~~~~LG~~~~~~~~~~~~~~~~~~~~~~~y~~~~y~~G~~Cd~~g~ 81 (124)
T 3aih_A 2 SAPCLLKTKDWWTYEFCYGRHIQQYHMEDSEIKGEVLYLGYYQSAFDWDDETAKASKQHRLKRYHSQTYGNGSKCDLNGR 81 (124)
T ss_dssp --CCEEEEETTEEEEEETTTEEEEECEETTEECSCCEEEEEEEEEEEEEC-----------CEEEEEEEECCSBCTTTSC
T ss_pred CCcceEcCCCEEEEEECCCCeEEEecccCCCCCCCEEECccccccccccccccccccccccceeEEEEcCCCCccCCCCC
Confidence 46899999999999999999999997 234688999998 85 25899999999999 9999
Q ss_pred CCeeEEEEEeCC-----CCceeeecCCCccEEEEEEeccCCCC
Q 006780 569 DRSMKVRLRCGL-----KNEVTDVDEPSRCEYVALLYTPAVCS 606 (631)
Q Consensus 569 ~Rst~V~l~Cg~-----~~~i~sV~EpskC~Y~~~~~TPa~C~ 606 (631)
+|+|+|+|.|++ .+.|++|.||++|+|.|+|.||++|.
T Consensus 82 ~Rst~V~~~C~~~~~~~~~~i~~v~E~~~C~Y~~~v~tP~~C~ 124 (124)
T 3aih_A 82 PREAEVRFLCDEGAGISGDYIDRVDEPLSCSYVLTIRTPRLCP 124 (124)
T ss_dssp BCEEEEEEEECTTCCSSCCEEEEEEEEETTEEEEEEEEGGGCC
T ss_pred CcEEEEEEEeCCCCCCCccEEEEEcCCCceEEEEEEEecccCC
Confidence 999999999998 68999999999999999999999995
No 2
>2rl8_A Cation-dependent mannose-6-phosphate receptor; P-type lectin, lectin, glycop lysosome, membrane, transmembrane, transport; HET: NAG M6D; 1.45A {Bos taurus} SCOP: b.64.1.1 PDB: 1keo_A* 2rl7_A* 2rl6_A* 2rl9_A* 2rlb_A* 3cy4_A* 3k41_A* 3k43_A* 3k42_A* 1m6p_A* 1c39_A*
Probab=99.61 E-value=9.6e-16 Score=145.46 Aligned_cols=102 Identities=20% Similarity=0.420 Sum_probs=85.0
Q ss_pred hhhhhhccceEEeec----CeEEEEEecCCc---------eeecc--CCceeEeecccccC---C-CeeEEEecCCcc--
Q 006780 505 KEFYSFYGHCFESKQ----NKYVYKVCPYKK---------ATQEE--GHSTTRLGSWDKFE---D-SYHIMLFSNGDK-- 563 (631)
Q Consensus 505 ~~f~~L~~~C~~~~~----g~Y~YelC~~~~---------v~Q~~--g~~~~~LG~f~~~~---~-~~~~m~Y~~G~~-- 563 (631)
..|.||.++||.... +.|+|.||..+. +.|.. +...++||+|..+. . +.+.|.|.+|++
T Consensus 24 ~~L~pL~~~~f~~~~~~~~~~Y~Y~~nVCg~~~~~~~~ag~cQ~~~~~~~~~~iG~~~~~~~~~g~d~i~L~Y~~G~~~~ 103 (154)
T 2rl8_A 24 KRLTPLFQKSFESTVGQSPDMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVGRFNETQIFQGSNWIMLIYKGGDEYD 103 (154)
T ss_dssp HHTGGGTTCCEECCCC---CCEEEEECSSSCCSSSSSCEEEEEEETTTCCEEEEEEEEEEEEEECSSEEEEEEEECCBCS
T ss_pred eccccccCCeeEEeeccCCCceEEEEEEecCCCCCCCCccEEEEecCCCceEEeeeccceEEEcCCceEEEEECCCcccc
Confidence 458999999999733 899999999999 77764 33466799998864 1 246789999999
Q ss_pred -CCCCCCCeeEEEEEeCCCC---ceeeecCC----CccEEEEEEeccCCCC
Q 006780 564 -CWNGPDRSMKVRLRCGLKN---EVTDVDEP----SRCEYVALLYTPAVCS 606 (631)
Q Consensus 564 -CwNGp~Rst~V~l~Cg~~~---~i~sV~Ep----skC~Y~~~~~TPa~C~ 606 (631)
|||+++|+|.|+|.|++.. .+.-|.|| +.|.|.|++.||+||.
T Consensus 104 s~c~~~~Rst~I~f~Cd~~~~~~~~~~v~E~~~~~~~C~Y~F~~~T~~ACP 154 (154)
T 2rl8_A 104 NHCGREQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS 154 (154)
T ss_dssp SSGGGCBCCEEEEEEECTTCSSEEEEEEEEECCSSSCCEEEEEEEEGGGCC
T ss_pred cccCCCcceEEEEEEeCCCCCCCccEEEecccCccCceEEEEEEecCccCC
Confidence 7999999999999999876 56667665 8999999999999995
No 3
>2kva_A Cation-independent mannose-6-phosphate receptor; transport, lysosome, sugar binding, glyco membrane, phosphoprotein, transmembrane, disulfide bond; NMR {Bos taurus} PDB: 2kvb_A
Probab=99.38 E-value=2.2e-12 Score=120.12 Aligned_cols=105 Identities=17% Similarity=0.326 Sum_probs=79.2
Q ss_pred CCchhhhhhhccce-EEeecCeEEEEE----------ecCCcee-ecc--CCceeEeecccc---cCCCeeEEEecCCcc
Q 006780 501 FGPEKEFYSFYGHC-FESKQNKYVYKV----------CPYKKAT-QEE--GHSTTRLGSWDK---FEDSYHIMLFSNGDK 563 (631)
Q Consensus 501 ~G~~~~f~~L~~~C-~~~~~g~Y~Yel----------C~~~~v~-Q~~--g~~~~~LG~f~~---~~~~~~~m~Y~~G~~ 563 (631)
.|..--|.+|.+.= +....+.|+|.| |+.+... |.. ++..++||.|.. |.+.++.|.|.+|+.
T Consensus 22 ~g~~yDLs~L~~~~~y~~~~~~y~y~~niC~~~~~~~C~~~~~~Cq~~~~~~~~~~lG~~~~~~~~~~~~l~l~Y~~G~~ 101 (148)
T 2kva_A 22 AGFSFDLTPLTKKDAYKVETDKYEFHINVCGPVSVGACPPDSGACQVSRSDRKSWNLGRSNAKLSYYDGMIQLTYRDGTP 101 (148)
T ss_dssp TTEEEECGGGCCTTCEEEECSSEEEEECSSBCCCCTTSCTTEEEEEEESSSCCEEEEEECBCCEEEETTEEEEEEBCCCC
T ss_pred CCCEEEChhccCCCCEEEeCCCeEEEEEeCCCCCcCccCCCCeEEEEcCCCCceEEeeecCCCcEEcCCeEEEEECCCCc
Confidence 34444577776654 444566677665 3433333 653 345789999987 778899999999999
Q ss_pred CCCCC--CCeeEEEEEeCCCCc---eeeecCCCccEEEEEEeccCCCC
Q 006780 564 CWNGP--DRSMKVRLRCGLKNE---VTDVDEPSRCEYVALLYTPAVCS 606 (631)
Q Consensus 564 CwNGp--~Rst~V~l~Cg~~~~---i~sV~EpskC~Y~~~~~TPa~C~ 606 (631)
||||+ +|||.|.|.|+++.. ...|.| ..|.|.|++.||+||.
T Consensus 102 C~~~~~~~rst~I~f~Cd~~~~~~~p~~~~~-~~C~Y~f~~~T~~ACp 148 (148)
T 2kva_A 102 YNNEKRTPRATLITFLCDRDAGVGFPEYQEE-DNSTYNFRWYTSYACP 148 (148)
T ss_dssp CSCTTCCCCEEEEEEECCSSCSSCCEEECSC-CSSEEEEEEECGGGCC
T ss_pred CCCCCCceeEEEEEEEeCCCCCCCCCEEeec-CCCEEEEEEeccccCc
Confidence 99997 699999999998743 355666 7899999999999994
No 4
>1gp0_A Cation-independent mannose-6-phosphate receptor; insulin-like growth factor, transport, beta barrel; 1.4A {Homo sapiens} SCOP: b.64.1.1 PDB: 1e6f_A 1gp3_A 1gqb_A 2cnj_D 2l29_A 2l2a_A
Probab=99.24 E-value=7.8e-12 Score=116.32 Aligned_cols=86 Identities=16% Similarity=0.305 Sum_probs=68.9
Q ss_pred CeEEEEEecCCceeecc-------CCceeEeecccccC---CCeeEEEecCCccCCC--CCCCeeEEEEEeCCC----Cc
Q 006780 520 NKYVYKVCPYKKATQEE-------GHSTTRLGSWDKFE---DSYHIMLFSNGDKCWN--GPDRSMKVRLRCGLK----NE 583 (631)
Q Consensus 520 g~Y~YelC~~~~v~Q~~-------g~~~~~LG~f~~~~---~~~~~m~Y~~G~~CwN--Gp~Rst~V~l~Cg~~----~~ 583 (631)
+.|++.||-- +.+-. ++..++||+|..|- +.++.|.|.+|+.||+ |++|||.|.|.|+++ ..
T Consensus 39 ~~~~~nvC~~--~~~C~~~~gac~~~~~~slG~~~~~~~~~~~~l~L~Y~~G~~C~~~~g~~rst~I~f~C~~~~~~~~~ 116 (143)
T 1gp0_A 39 GLVYMSICGE--NENCPPGVGACFGQTRISVGKANKRLRYVDQVLQLVYKDGSPCPSKSGLSYKSVISFVCRPEAGPTNR 116 (143)
T ss_dssp EEEEECBSSC--CTTSSTTBSEEETTTCCBSCBCCCCCEEETTEEEEEECCCSBCSSSTTCBCEEEEEEEECSSCCSSCC
T ss_pred CEEEEEeCCC--cCCCCCCCEEEECCCcEEcccccceEEEECCEEEEEECCCCcCCCCCCceeEEEEEEEeCCCCCCCCC
Confidence 4566777753 22211 34578999999873 5789999999999996 899999999999986 57
Q ss_pred eeeecCC-CccEEEEEEeccCCCCc
Q 006780 584 VTDVDEP-SRCEYVALLYTPAVCSE 607 (631)
Q Consensus 584 i~sV~Ep-skC~Y~~~~~TPa~C~~ 607 (631)
+..|.|+ ..|.|.|.+.||+||..
T Consensus 117 ~~~v~~~~~~C~Y~f~~~T~~AC~~ 141 (143)
T 1gp0_A 117 PMLISLDKQTCTLFFSWHTPLACEQ 141 (143)
T ss_dssp CEEEEEETTTTEEEEEEEEGGGCC-
T ss_pred CEEeecCCCCcEEEEEEeecccCCC
Confidence 7899986 68999999999999975
No 5
>2lla_A Mannose-6-phosphate/insulin-like growth factor II; monotreme, IGF-II, domain 11, transport; NMR {Tachyglossus aculeatus}
Probab=98.69 E-value=8.3e-08 Score=88.30 Aligned_cols=70 Identities=16% Similarity=0.383 Sum_probs=56.2
Q ss_pred ceeEeecccc---cCCCeeEEEecCCccCCCCC--CCeeEEEEEeCCCC-----ceeeecCCCccEEEEEEeccCCCCch
Q 006780 539 STTRLGSWDK---FEDSYHIMLFSNGDKCWNGP--DRSMKVRLRCGLKN-----EVTDVDEPSRCEYVALLYTPAVCSEE 608 (631)
Q Consensus 539 ~~~~LG~f~~---~~~~~~~m~Y~~G~~CwNGp--~Rst~V~l~Cg~~~-----~i~sV~EpskC~Y~~~~~TPa~C~~~ 608 (631)
..++||.+.. |.+..+.|.|.+|+.|.+|+ +|+|.|.|.|.+.. .+.-..|...|.|.|++.||+||.+.
T Consensus 60 ~~~~~G~~~~~~~~~~~~l~L~Y~~G~~C~~~~~~~~st~I~F~C~~~~~~~~~p~~~~~~~~~C~y~F~w~T~~ACp~~ 139 (140)
T 2lla_A 60 TGIKAGKWNQKLSYVDQVLQLVYEDGDPCPANLHLKYKSVISFVCKSDAGPTSQPLLLSVDEHTCTLFFSWHTSLACEQE 139 (140)
T ss_dssp TTEEEEECCCCEEEETTEEEEEEBCCCBCTTTSSCBCEEEEEEEECTTTTTSCEEEEEEECTTTCEEEEEEEEGGGSCCC
T ss_pred CCcccceeccccEEeCCEEEEEEcCCCcCCCCCCceeEEEEEEEcCCCCCCCCCceEEeccCCCCEEEEEEeeCccCCCC
Confidence 3578998865 45678999999999999874 68999999997632 23334577889999999999999753
No 6
>2l21_A Cation-independent mannose-6-phosphate receptor; genomic imprinting, insulin-like growth factor 2, mannose 6 receptor, protein evolution; NMR {Gallus gallus}
Probab=98.55 E-value=1.7e-07 Score=88.43 Aligned_cols=90 Identities=20% Similarity=0.311 Sum_probs=66.8
Q ss_pred cCeEEEEEecCC--------ceeeccCCceeEeecccc---cCCCeeEEEecCCccCC--CCCCCeeEEEEEeCCC----
Q 006780 519 QNKYVYKVCPYK--------KATQEEGHSTTRLGSWDK---FEDSYHIMLFSNGDKCW--NGPDRSMKVRLRCGLK---- 581 (631)
Q Consensus 519 ~g~Y~YelC~~~--------~v~Q~~g~~~~~LG~f~~---~~~~~~~m~Y~~G~~Cw--NGp~Rst~V~l~Cg~~---- 581 (631)
.+.|++.||--- .+-|..++..++||.++. |.+..+.|.|.+|+.|. +|..|||.|.|.|.+.
T Consensus 38 ~~~y~iNVC~~~~~~C~~~~gaC~~~~~~~~slG~~~~~l~~~~~~l~L~Y~~Gs~C~~~~~~~rsT~I~F~Cd~~~~~~ 117 (154)
T 2l21_A 38 NRKIELNVCAEAKSSCANGAAVCITDGPKTLNAGKLSKTLTYEDQVLKLVYEDGDPCPTDLKMKHKSYFSFVCKSDAGDD 117 (154)
T ss_dssp SCEEEECSSSCCSSSSSSSEEEEEEETTEEEEEEECCCCCEEETTEEEEEEECCCCCSSCSSSCCEEEEEEECCSSCTTT
T ss_pred CCEEEEEeCCCccCCCCCCCEEEEECCCCeEEcccccceEEEeCCEEEEEECCCCcCCCCCCCEEEEEEEEEECCCCCCC
Confidence 355777777421 122332334678999874 45678999999999994 5678999999999765
Q ss_pred CceeeecC-CCccEEEEEEeccCCCCch
Q 006780 582 NEVTDVDE-PSRCEYVALLYTPAVCSEE 608 (631)
Q Consensus 582 ~~i~sV~E-pskC~Y~~~~~TPa~C~~~ 608 (631)
....-|.| ...|.|.|.+.||+||...
T Consensus 118 ~~p~~v~~~~d~C~Y~F~w~T~~AC~~~ 145 (154)
T 2l21_A 118 SQPVFLSFDEQTCTSYFSWHTSLACEEE 145 (154)
T ss_dssp TCEEEEEEETTTTEEEEEEECTTTCCSS
T ss_pred CceEEEEECCCCeEEEEEEeccccCCCC
Confidence 25667765 6679999999999999754
No 7
>2l2g_A IGF2R domain 11; insulin-like growth factor 2, mannose 6 phosphate receptor, imprinting, protein evolution, signaling protein; NMR {Monodelphis domestica}
Probab=98.44 E-value=3.8e-07 Score=85.92 Aligned_cols=71 Identities=20% Similarity=0.403 Sum_probs=57.7
Q ss_pred CceeEeecccc---cCCCeeEEEecCCccCCC--CCCCeeEEEEEeCCC----CceeeecC-CCccEEEEEEeccCCCCc
Q 006780 538 HSTTRLGSWDK---FEDSYHIMLFSNGDKCWN--GPDRSMKVRLRCGLK----NEVTDVDE-PSRCEYVALLYTPAVCSE 607 (631)
Q Consensus 538 ~~~~~LG~f~~---~~~~~~~m~Y~~G~~CwN--Gp~Rst~V~l~Cg~~----~~i~sV~E-pskC~Y~~~~~TPa~C~~ 607 (631)
+..++||.++. |.+..+.|.|.+|+.|-+ +..|+|.|.|.|.+. ....-|.| ...|.|.|.+.||+||..
T Consensus 62 ~~~~s~G~~~~~l~~~~~~l~L~Y~~Gs~C~~~~~~~rst~I~F~Cd~~~~~~~~p~~v~~~~~~C~Y~F~w~T~~AC~~ 141 (151)
T 2l2g_A 62 LTKINAGSWNSQLMYVDQVLQLVYDDGAPCPSKNALKYKSVISFVCTHDSGANNKPVFVSLDKQTCTLYFSWHTPLACEK 141 (151)
T ss_dssp SSCCEEEECCCCEEEETTEEEEEECSCSBCCSSSSSBCEEEEEEEECSSSSCCCCEEEEEEETTTTEEEEEEEEGGGSCC
T ss_pred CCceEeeecccceEEECCEEEEEECCCCCCCCCCCceeEEEEEEEECCCCCCCCCcEEEEecCCceEEEEEEechhcCCC
Confidence 34678998765 345789999999999964 568999999999864 35677888 667999999999999975
Q ss_pred h
Q 006780 608 E 608 (631)
Q Consensus 608 ~ 608 (631)
.
T Consensus 142 ~ 142 (151)
T 2l2g_A 142 E 142 (151)
T ss_dssp S
T ss_pred C
Confidence 4
No 8
>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P receptor, CI-MPR; P-lectin, protein transport,S binding protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP: b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A*
Probab=98.16 E-value=4.7e-06 Score=90.44 Aligned_cols=66 Identities=18% Similarity=0.367 Sum_probs=56.1
Q ss_pred eeEeeccc----ccCCCeeEEEecCCccCCCCCCCeeEEEEEeCCCC------ceeeecCCCccEEEEEEeccCCCC
Q 006780 540 TTRLGSWD----KFEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKN------EVTDVDEPSRCEYVALLYTPAVCS 606 (631)
Q Consensus 540 ~~~LG~f~----~~~~~~~~m~Y~~G~~CwNGp~Rst~V~l~Cg~~~------~i~sV~EpskC~Y~~~~~TPa~C~ 606 (631)
..++|.+. .|.++.+.|.|.+|+.|-||..|+|.|.|.|.+.. .++-|.|. .|.|.|++.|++||.
T Consensus 357 ~~~~G~~~~~~~~~~~~~l~L~Y~~G~~C~~~~~rst~I~f~Cd~~~~~~~~~~p~~~~e~-~C~Y~f~~~T~~AC~ 432 (432)
T 1q25_A 357 VKVAGRPQNLTLRYSDGDLTLIYFGGEECSSGFQRMSVINFECNQTAGNNGRGAPVFTGEV-DCTYFFTWDTKYACV 432 (432)
T ss_dssp EEECCCTTSEEEEEETTEEEEEECCCCBCTTSCBCEEEEEEEECTTCTTTTTCCCEEEEEE-TTEEEEEEEEGGGCC
T ss_pred eEEeeEecccCEEEeCCeEEEEECCCCcCCCCCeeEEEEEEEeCCCCCcCCCCccEEEeeC-ceEEEEEEeeeEecC
Confidence 46789873 24567899999999999999999999999998743 36777887 899999999999994
No 9
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=98.07 E-value=2.2e-06 Score=72.74 Aligned_cols=31 Identities=35% Similarity=0.699 Sum_probs=28.2
Q ss_pred CCcEEecCCCCccccccccCCccCCCCCCCCC
Q 006780 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEP 86 (631)
Q Consensus 55 ~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEP 86 (631)
.+.|.|.|| .-||.++|-||+-||.|||||.
T Consensus 5 ~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~ 35 (80)
T 2fcw_B 5 QAEFRCHDG-KCISRQFVCDSDRDCLDGSDEA 35 (80)
T ss_dssp TTEEECTTS-CEEEGGGTTSSSCCSTTCTTTT
T ss_pred CCccCCCCC-CEEeeecccCCcccCCCccccc
Confidence 467999987 5899999999999999999995
No 10
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=97.99 E-value=1.4e-06 Score=66.69 Aligned_cols=34 Identities=29% Similarity=0.624 Sum_probs=29.4
Q ss_pred CCcEEecC----CCCccccccccCCccCCCCCCCCCCC
Q 006780 55 SNTIKCKD----GSKKFAKTQLNDDYCDCPDGTDEPDC 88 (631)
Q Consensus 55 ~g~F~C~n----Gs~~Ip~s~VNDdyCDC~DGSDEPdC 88 (631)
.+.|+|.+ ...-||.++|.|++.||+|||||..|
T Consensus 7 ~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C 44 (47)
T 1jrf_A 7 PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44 (47)
T ss_dssp CCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHH
T ss_pred CCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccC
Confidence 56899996 34789999999999999999999654
No 11
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=97.97 E-value=4e-06 Score=71.33 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=27.8
Q ss_pred CCcEEecCCCCccccccccCCccCCCCCCCC
Q 006780 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDE 85 (631)
Q Consensus 55 ~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDE 85 (631)
.+.|+|.|| .-||.++|-||+-||.|||||
T Consensus 7 ~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE 36 (82)
T 2fyj_A 7 PNQFSCASG-RCIPISWTCDLDDDCGDRSDE 36 (82)
T ss_dssp TTEEETTSS-CEEETTSSSSCSSSSCSTTTT
T ss_pred CCceEeCCC-CEEeccccCCCcccCCCcccc
Confidence 567999997 589999999999999999999
No 12
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=97.82 E-value=1.7e-06 Score=73.53 Aligned_cols=40 Identities=25% Similarity=0.467 Sum_probs=33.1
Q ss_pred CCcEEecCCCCccccccccCCccCCCCCCCCC---CCC--CCccc
Q 006780 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEP---DCC--DGSDE 94 (631)
Q Consensus 55 ~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEP---dCC--DgSDE 94 (631)
.+.|+|.|+..-||.++|.||..||+|||||. .|. ..|.+
T Consensus 11 ~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~ 55 (80)
T 2kny_A 11 PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSG 55 (80)
T ss_dssp SSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTT
T ss_pred CCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCc
Confidence 56899997557999999999999999999997 465 44544
No 13
>2v5o_A Cation-independent mannose-6-phosphate receptor; membrane, lysosome, transport, beta barrel, phosphorylation, fibronec II; HET: NAG; 2.91A {Homo sapiens} PDB: 2v5p_A* 2v5n_A*
Probab=97.75 E-value=3.5e-05 Score=87.48 Aligned_cols=86 Identities=17% Similarity=0.359 Sum_probs=67.3
Q ss_pred CeEEEEEecCCc-------eeeccCCceeEeecccc---cCCCeeEEEecCCccCC--CCCCCeeEEEEEeCCC----Cc
Q 006780 520 NKYVYKVCPYKK-------ATQEEGHSTTRLGSWDK---FEDSYHIMLFSNGDKCW--NGPDRSMKVRLRCGLK----NE 583 (631)
Q Consensus 520 g~Y~YelC~~~~-------v~Q~~g~~~~~LG~f~~---~~~~~~~m~Y~~G~~Cw--NGp~Rst~V~l~Cg~~----~~ 583 (631)
|.|.+.||---. +-| ++..++||++.. |.+..+.|.|.+|+.|- +|..|+|.|.|.|+++ ..
T Consensus 39 ~~~~~nvC~~~~~C~~~~~aC~--~~~~~slG~~~~~l~~~~~~l~L~Y~~G~~C~~~~~~~~sT~I~f~Cd~~~~~~~~ 116 (627)
T 2v5o_A 39 GLVYMSICGENENCPPGVGACF--GQTRISVGKANKRLRYVDQVLQLVYKDGSPCPSKSGLSYKSVISFVCRPEAGPTNR 116 (627)
T ss_dssp EEEEECSSSCCTTSSTTCSEEE--STTCCEEEBCCCCEEEETTEEEEEEBSCSBCSSSTTCBCEEEEEEEECSSCCTTCS
T ss_pred CEEEEEeCCCcccCCCCcEEEe--cCccEecccccceeEEECCEEEEEECCCCcCCCCCCceEEEEEEEEeCCCCCcCCc
Confidence 457788886421 111 345789999764 66788999999999996 5788999999999864 35
Q ss_pred eeeecC-CCccEEEEEEeccCCCCc
Q 006780 584 VTDVDE-PSRCEYVALLYTPAVCSE 607 (631)
Q Consensus 584 i~sV~E-pskC~Y~~~~~TPa~C~~ 607 (631)
..-|.+ ...|.|.|.+.||+||..
T Consensus 117 p~~v~~~~~~C~y~f~w~T~~AC~~ 141 (627)
T 2v5o_A 117 PMLISLDKQTCTLFFSWHTPLACEQ 141 (627)
T ss_dssp CEEEEEETTTTEEEEEEEEGGGCCS
T ss_pred ceEeeecCCCcEEEEEEecHHhCCC
Confidence 677777 678999999999999974
No 14
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=97.66 E-value=2.7e-05 Score=58.51 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=30.6
Q ss_pred CCcEEecCCCCccccccccCCccCCCCCCCCCCC
Q 006780 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPDC 88 (631)
Q Consensus 55 ~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEPdC 88 (631)
.+.|.|.|+..-||.++|-|++-||.|||||..|
T Consensus 9 ~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C 42 (43)
T 2jm4_A 9 LGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42 (43)
T ss_dssp TTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSC
T ss_pred CCeeECCCCCeEcCHhhccCCCCCCCCCcccCCC
Confidence 4679999966799999999999999999999766
No 15
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=97.66 E-value=2.9e-05 Score=58.08 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=30.9
Q ss_pred CCcEEecCCCCccccccccCCccCCCCCCCCCCCC
Q 006780 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPDCC 89 (631)
Q Consensus 55 ~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEPdCC 89 (631)
.+.|.|.|+..-||.+++-||+-||.|||||..|.
T Consensus 6 ~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 40 (42)
T 1cr8_A 6 TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40 (42)
T ss_dssp TTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCC
T ss_pred CCceEeCCCCeEcChhhcCCCCcCCCCCCcccCCC
Confidence 56799998557999999999999999999998764
No 16
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=97.59 E-value=1.3e-05 Score=61.57 Aligned_cols=35 Identities=37% Similarity=0.620 Sum_probs=31.6
Q ss_pred CCcEEecCCCCccccccccCCccCCCCCCCCCCCC
Q 006780 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPDCC 89 (631)
Q Consensus 55 ~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEPdCC 89 (631)
.+.|+|.||..-||.++|-|++-||.|||||..|.
T Consensus 9 ~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~ 43 (48)
T 2i1p_A 9 SAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCP 43 (48)
T ss_dssp SSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSC
T ss_pred CCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCC
Confidence 56799999878999999999999999999997764
No 17
>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P receptor, CI-MPR; P-lectin, protein transport,S binding protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP: b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A*
Probab=97.54 E-value=0.00013 Score=79.21 Aligned_cols=71 Identities=10% Similarity=0.288 Sum_probs=56.6
Q ss_pred ceeEeecccc---c-CCCeeEEEecCCccC----CCCCCCeeEEEEEeCCCCc---eeeecCCCccEEEEEEeccCCCCc
Q 006780 539 STTRLGSWDK---F-EDSYHIMLFSNGDKC----WNGPDRSMKVRLRCGLKNE---VTDVDEPSRCEYVALLYTPAVCSE 607 (631)
Q Consensus 539 ~~~~LG~f~~---~-~~~~~~m~Y~~G~~C----wNGp~Rst~V~l~Cg~~~~---i~sV~EpskC~Y~~~~~TPa~C~~ 607 (631)
..++||.... + .++.+.|.|.+|+.| |+|..|+|+|.|.|.+... +..+.+.+.|.|.|++.||+||..
T Consensus 203 ~~~~lG~~~~~~~~~~~~~l~L~Y~~g~~~~~~~C~~~~~st~I~f~C~~~~~~~~~~~~~~~~~C~Y~fe~~T~~ACp~ 282 (432)
T 1q25_A 203 RAFDVGRPQEGLKLVSNDRLVLSYVKEGAGQPDFCDGHSPAVTITFVCPSERREGTIPKLTAKSNCRFEIEWVTEYACHR 282 (432)
T ss_dssp CEEEEEEECSCCEEEETTEEEEEEECCSSCCCCTTSSCCCEEEEEEECCSSCCCCCCCEEEEESSSEEEEEEECGGGSCG
T ss_pred ceEEecccCCCceEcCCCcEEEEEcCCCcCCCCcCCCcccEEEEEEEcCCCCCCCCCceEEecCCCEEEEEEeecccCCC
Confidence 4578998876 3 257899999999544 2677899999999987533 556667889999999999999986
Q ss_pred hh
Q 006780 608 EK 609 (631)
Q Consensus 608 ~~ 609 (631)
..
T Consensus 283 ~~ 284 (432)
T 1q25_A 283 DY 284 (432)
T ss_dssp GG
T ss_pred Cc
Confidence 54
No 18
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=97.53 E-value=4.4e-05 Score=56.15 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=31.2
Q ss_pred CCcEEecCC-CCccccccccCCccCCCCCCCCCCCCC
Q 006780 55 SNTIKCKDG-SKKFAKTQLNDDYCDCPDGTDEPDCCD 90 (631)
Q Consensus 55 ~g~F~C~nG-s~~Ip~s~VNDdyCDC~DGSDEPdCCD 90 (631)
.+.|.|.|+ ..-||.+.+.|+.-||+|||||-.|.|
T Consensus 3 ~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~~ 39 (39)
T 3dpr_E 3 IHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39 (39)
T ss_dssp TTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTCCC
T ss_pred CCceecCCCCCCEeCccccCCCcccCcCCcccccCCC
Confidence 457999994 589999999999999999999977753
No 19
>2v5o_A Cation-independent mannose-6-phosphate receptor; membrane, lysosome, transport, beta barrel, phosphorylation, fibronec II; HET: NAG; 2.91A {Homo sapiens} PDB: 2v5p_A* 2v5n_A*
Probab=97.30 E-value=0.00033 Score=79.49 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=53.9
Q ss_pred eeEeecccc----cCCCeeEEEecCCccCCCCCCCeeEEEEEeCCCC--ceeeecCCCccEEEEEEeccCCCCchh
Q 006780 540 TTRLGSWDK----FEDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKN--EVTDVDEPSRCEYVALLYTPAVCSEEK 609 (631)
Q Consensus 540 ~~~LG~f~~----~~~~~~~m~Y~~G~~CwNGp~Rst~V~l~Cg~~~--~i~sV~EpskC~Y~~~~~TPa~C~~~~ 609 (631)
..+||.... ..+..+.|.|.+|+.|-++..|||.|.|.|+..- -.+...|...|+|.|.+.|.+||.-.+
T Consensus 547 ~~~lG~~~~~~~~~~~~~v~l~Y~~G~~C~~~~~~st~I~f~C~~~~g~P~~~~~~~~~C~y~f~W~T~~AC~~~~ 622 (627)
T 2v5o_A 547 VQVLGLVHTQKLGVIGDKVVVTYSKGYPCGGNKTASSVIELTCTKTVGRPAFKRFDIDSCTYYFSWDSRAACAVKH 622 (627)
T ss_dssp EEEEEEGGGCEEEEETTEEEEEECCCSBCSTTCBCEEEEEEEECSSEEEEEEEEEETTTTEEEEEEEEGGGCCCC-
T ss_pred eeeccccccCcEEEECCEEEEEECCCCcCCCCCcceEEEEEEeCCCCCCcEEEEecCCCCEEEEEeCChhhccccc
Confidence 467888653 2356689999999999888889999999998632 123344666799999999999997554
No 20
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=97.12 E-value=0.00017 Score=55.95 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=29.2
Q ss_pred CCcEEecCCCCccccccccCCccCCCCCCCCCCC
Q 006780 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPDC 88 (631)
Q Consensus 55 ~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEPdC 88 (631)
.+.|+|.+...-||.++|-|+.-||.|||||..|
T Consensus 9 ~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~C 42 (50)
T 2knx_A 9 PSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42 (50)
T ss_dssp TTEEEETTTTEEEETTTTTSSSCCSTTCGGGSGG
T ss_pred CCcEEcCCCCeEcChhhcCCCCCCCCCCCccccc
Confidence 5689998434789999999999999999999765
No 21
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=97.04 E-value=0.00022 Score=53.72 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=27.9
Q ss_pred CCcEEecCCCCccccccccCCccCCCCCCCCC
Q 006780 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEP 86 (631)
Q Consensus 55 ~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEP 86 (631)
.+.|+|.|| .-||.+.|-|++-||.|||||.
T Consensus 7 ~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~ 37 (44)
T 1j8e_A 7 STQFKCNSG-RCIPEHWTCDGDNDCGDYSDET 37 (44)
T ss_dssp TTEEECTTS-CEEEGGGTTSSSCCSSSSGGGS
T ss_pred CCceEeCCC-CeEecCcccCCCCCCCCCCCCC
Confidence 567999987 5899999999999999999986
No 22
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=96.92 E-value=0.00046 Score=50.05 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=29.2
Q ss_pred CCcEEecCCCCccccccccCCccCCCCCCCCCCC
Q 006780 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPDC 88 (631)
Q Consensus 55 ~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEPdC 88 (631)
.+.|.|.|| .=||.++|=||+=||.|||||..|
T Consensus 4 ~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~C 36 (37)
T 1ajj_A 4 AFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENC 36 (37)
T ss_dssp TTCEECTTS-CEECGGGTTSSSCCSTTCGGGTTC
T ss_pred CCceEcCCC-CeechhhccCCCCCCCCCccccCC
Confidence 467999987 589999999999999999999765
No 23
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=96.76 E-value=0.00069 Score=57.46 Aligned_cols=33 Identities=27% Similarity=0.572 Sum_probs=29.8
Q ss_pred CCcEEecCCCCccccccccCCccCCCCCCCCCCC
Q 006780 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPDC 88 (631)
Q Consensus 55 ~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEPdC 88 (631)
.+.|+|.|| .-||.++|-||+-||.|||||..|
T Consensus 48 ~~~f~C~~g-~CI~~~~~CDG~~DC~DgSDE~~C 80 (82)
T 2fyj_A 48 LTQFTCNNG-RCININWRCDNDNDCGDNSDEAGC 80 (82)
T ss_dssp SSEEECTTS-CEEETTCBSSSSBCCSSSSSCSCC
T ss_pred CCceECCCC-CeEcHHHccCCCCcCCCCccccCC
Confidence 478999987 589999999999999999999766
No 24
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=96.75 E-value=0.00089 Score=50.41 Aligned_cols=33 Identities=27% Similarity=0.596 Sum_probs=29.3
Q ss_pred CCcEEecCCCCccccccccCCccCCCCCCCCCCC
Q 006780 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPDC 88 (631)
Q Consensus 55 ~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEPdC 88 (631)
.+.|.|.|| .=||.+.|=|+.=||.|||||..|
T Consensus 10 ~~~f~C~~g-~CI~~~~~CDg~~DC~DgSDE~~C 42 (44)
T 3a7q_B 10 KDQFQCRNE-RCIPSVWRCDEDDDCLDHSDEDDC 42 (44)
T ss_dssp TTEEECTTS-CEEEGGGTTSSSCCSSSSTTTSCC
T ss_pred CCceEcCCC-CEeChhhccCCCCCCCCCccccCC
Confidence 457999996 589999999999999999999766
No 25
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=96.71 E-value=0.00067 Score=51.69 Aligned_cols=34 Identities=29% Similarity=0.624 Sum_probs=29.3
Q ss_pred CCcEEecC----CCCccccccccCCccCCCCCCCCCCC
Q 006780 55 SNTIKCKD----GSKKFAKTQLNDDYCDCPDGTDEPDC 88 (631)
Q Consensus 55 ~g~F~C~n----Gs~~Ip~s~VNDdyCDC~DGSDEPdC 88 (631)
.+.|.|.+ ...=||.+++=|++=||+|||||..|
T Consensus 9 ~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~C 46 (47)
T 1k7b_A 9 PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46 (47)
T ss_dssp TTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred CCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCCC
Confidence 56799995 34789999999999999999999765
No 26
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=96.50 E-value=0.00095 Score=56.48 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=27.4
Q ss_pred CCcEEecCCCCccccccccCCccCCCCCCCC
Q 006780 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDE 85 (631)
Q Consensus 55 ~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDE 85 (631)
.+.|+|.|| .-||.++|-||+-||+|||||
T Consensus 44 ~~~f~C~~g-~Ci~~~~~CDg~~DC~dgsDE 73 (80)
T 2fcw_B 44 PASFQCNSS-TCIPQLWACDNDPDCEDGSDE 73 (80)
T ss_dssp TTEEECTTS-CEEEGGGTTSSSCCSTTCGGG
T ss_pred ceeeECCCC-CEEecccccCCCcCCCCCCCc
Confidence 468999987 589999999999999999999
No 27
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.40 E-value=0.0013 Score=75.14 Aligned_cols=31 Identities=26% Similarity=0.466 Sum_probs=16.9
Q ss_pred CCcEEecCCC-CccccccccCCccCCCCCCCC
Q 006780 55 SNTIKCKDGS-KKFAKTQLNDDYCDCPDGTDE 85 (631)
Q Consensus 55 ~g~F~C~nGs-~~Ip~s~VNDdyCDC~DGSDE 85 (631)
.+.|.|.+|+ .-||.+++.|++.||.|||||
T Consensus 49 ~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE 80 (699)
T 1n7d_A 49 SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 80 (699)
T ss_dssp SSSCCCCC--CCCCCSSSTTSSSCCC-CCCTT
T ss_pred CCccCCCCCCCceeCcceecCCcccCCCCccc
Confidence 3456666542 556666666666666666666
No 28
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=95.99 E-value=0.0041 Score=47.14 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=28.2
Q ss_pred CCcEEecCCCCccccccccCCccCCCCCCCCCC
Q 006780 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPD 87 (631)
Q Consensus 55 ~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEPd 87 (631)
.+.|.|.|| .=||.++|=||+=||.|||||..
T Consensus 8 ~~~F~C~~g-~CI~~~~~CDG~~DC~DgSDE~~ 39 (45)
T 1d2l_A 8 PGEFACANS-RCIQERWKCDGDNDCLDNSDEAP 39 (45)
T ss_dssp BTCEEETTT-EEECGGGTTTSSCTTTTCSTTST
T ss_pred CCceEcCCC-CeEehhhccCCCCCCCCCCCCCC
Confidence 457999987 58999999999999999999975
No 29
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.63 E-value=0.0049 Score=70.31 Aligned_cols=31 Identities=35% Similarity=0.726 Sum_probs=24.3
Q ss_pred CCcEEecCCCCccccccccCCccCCCCCCCCC
Q 006780 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEP 86 (631)
Q Consensus 55 ~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEP 86 (631)
.+.|+|.|| .-||.+.|-|+..||+|||||.
T Consensus 90 ~~~f~C~~g-~Ci~~~~~Cdg~~dC~dgsDE~ 120 (699)
T 1n7d_A 90 QDEFRCHDG-KCISRQFVCDSDRDCLDGSDEA 120 (699)
T ss_dssp SSCCCSSCC-----CCCTTCSSCCSSSSCSSS
T ss_pred cCcEEcCCC-CEecHHHcCCCcCcCCCCCccC
Confidence 467999887 4799999999999999999993
No 30
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.16 E-value=0.0035 Score=72.92 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=0.0
Q ss_pred CcEEecCC-CCccccccccCCccCCCCCCCCC
Q 006780 56 NTIKCKDG-SKKFAKTQLNDDYCDCPDGTDEP 86 (631)
Q Consensus 56 g~F~C~nG-s~~Ip~s~VNDdyCDC~DGSDEP 86 (631)
+.|.|.++ ..-||.+.+-|+.-||.|||||.
T Consensus 68 ~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE~ 99 (791)
T 3m0c_C 68 GDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQ 99 (791)
T ss_dssp --------------------------------
T ss_pred CccccCCCCCCEeeccccCCCCcCcCCCcccC
Confidence 34555553 34566666666666666666665
No 31
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=95.01 E-value=0.0061 Score=47.78 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=26.8
Q ss_pred CCcEEecCCCCccccccccCCccCCCCCCCCCC
Q 006780 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPD 87 (631)
Q Consensus 55 ~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEPd 87 (631)
.+.|.|.|| .=||.+.|=||.=||.|||||..
T Consensus 9 ~~~F~C~nG-~CIp~~~~CDG~~DC~DgSDE~~ 40 (52)
T 2m0p_A 9 DTQYTCDNH-QCISKNWVCDTDNDCGDGSDEKN 40 (52)
T ss_dssp SSEEECTTC-CEEETTSTTSSSCSSSSCHHHHS
T ss_pred CCceECCCC-CEEecCccCCCCCCCCCCCcccc
Confidence 467999998 58999999999989888888753
No 32
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=93.09 E-value=0.017 Score=67.19 Aligned_cols=30 Identities=37% Similarity=0.748 Sum_probs=0.0
Q ss_pred CcEEecCCCCccccccccCCccCCCCCCCCC
Q 006780 56 NTIKCKDGSKKFAKTQLNDDYCDCPDGTDEP 86 (631)
Q Consensus 56 g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEP 86 (631)
+.|.|.|| .=||.++|-|+.-||.|||||.
T Consensus 109 ~~f~C~~g-~Ci~~~~~CDg~~dC~dgsDE~ 138 (791)
T 3m0c_C 109 DEFRCHDG-KCISRQFVCDSDRDCLDGSDEA 138 (791)
T ss_dssp -------------------------------
T ss_pred CeEECCCC-CEECHHHcCCCcccCCCCcccc
Confidence 56889876 4899999999999999999998
No 33
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=92.84 E-value=0.045 Score=61.12 Aligned_cols=30 Identities=30% Similarity=0.576 Sum_probs=25.4
Q ss_pred CcEEecCCCCccccccccCCccCCCCCCCCC
Q 006780 56 NTIKCKDGSKKFAKTQLNDDYCDCPDGTDEP 86 (631)
Q Consensus 56 g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEP 86 (631)
..|.|.|| .-||...|=||+=||+|||||-
T Consensus 207 ~~~~C~~~-~ci~~~~~Cdg~~dC~d~sDE~ 236 (565)
T 2xrc_A 207 DFFQCVNG-KYISQMKACDGINDCGDQSDEL 236 (565)
T ss_dssp --CBCTTS-CBCCTTSTTSSSCCSSSSSSSS
T ss_pred CeeECCCC-CccCHHHcCCCcccCCCCcccc
Confidence 34999877 5899999999999999999994
No 34
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=90.34 E-value=0.14 Score=50.96 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=28.1
Q ss_pred CCcEEecC-CCCccccccccCCccCCCCCCCCC
Q 006780 55 SNTIKCKD-GSKKFAKTQLNDDYCDCPDGTDEP 86 (631)
Q Consensus 55 ~g~F~C~n-Gs~~Ip~s~VNDdyCDC~DGSDEP 86 (631)
.+.|.|.| ...=||.+.|=||.=||+|||||-
T Consensus 56 ~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~ 88 (217)
T 2gtl_M 56 EHESECRGDVPECIHDLLFCDGEKDCRDGSDED 88 (217)
T ss_dssp TTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred CCceecCCCCCcEechhhccCCCCCCCCCCccc
Confidence 56799986 456899999999999999999994
No 35
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=87.23 E-value=0.29 Score=48.70 Aligned_cols=43 Identities=21% Similarity=0.443 Sum_probs=33.2
Q ss_pred CCcEEecC-CCCccccccccCCccCCCCCCCCC--CCCCC----cccccC
Q 006780 55 SNTIKCKD-GSKKFAKTQLNDDYCDCPDGTDEP--DCCDG----SDEYDG 97 (631)
Q Consensus 55 ~g~F~C~n-Gs~~Ip~s~VNDdyCDC~DGSDEP--dCCDg----SDE~~g 97 (631)
.+.|.|.+ .+.=||.+.|=||.=||+|||||. .|... ++++.+
T Consensus 55 ~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g 104 (220)
T 2gtl_N 55 KRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSG 104 (220)
T ss_dssp TTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEE
T ss_pred CCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceee
Confidence 46799974 457999999999999999999994 56433 346554
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.13 E-value=33 Score=37.50 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=17.4
Q ss_pred cccccccCCCCcEEecC-----CCCccccccccCCccCC
Q 006780 46 QDENYYKTSSNTIKCKD-----GSKKFAKTQLNDDYCDC 79 (631)
Q Consensus 46 ~~~~~Y~~~~g~F~C~n-----Gs~~Ip~s~VNDdyCDC 79 (631)
....++- .+..|.|.. ..........|+..|.+
T Consensus 346 ~L~~L~l-~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 346 TLKNLTL-SHNDWDCNSLRALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp CCSEEEC-CSSCEEHHHHHHHTTTCCTTTBCCCCCCCCT
T ss_pred CCCEEEe-eCCCCCChhHHHHHHHHhhhccccccccCCc
Confidence 3344443 466799864 12333334566667763
No 37
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=81.26 E-value=0.4 Score=47.62 Aligned_cols=35 Identities=31% Similarity=0.615 Sum_probs=29.3
Q ss_pred CCcEEec-CCCCccccccccCCccCCCCCCCCCCCC
Q 006780 55 SNTIKCK-DGSKKFAKTQLNDDYCDCPDGTDEPDCC 89 (631)
Q Consensus 55 ~g~F~C~-nGs~~Ip~s~VNDdyCDC~DGSDEPdCC 89 (631)
.+.|.|. +...=||.+.|=||.=||.|||||-.|.
T Consensus 57 ~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~ 92 (215)
T 2gtl_O 57 EHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCT 92 (215)
T ss_dssp TTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCC
T ss_pred CcceeeCCCCCcCccccccCCCCCcCCCcccccCCC
Confidence 4679995 3346899999999999999999997664
No 38
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=77.37 E-value=0.11 Score=43.84 Aligned_cols=44 Identities=27% Similarity=0.444 Sum_probs=28.7
Q ss_pred CCCCCCcccccCcCCcc--chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006780 86 PDCCDGSDEYDGKVKCP--NTCWEAGKVARDKLKKKIATYQEGVLLR 130 (631)
Q Consensus 86 PdCCDgSDE~~g~~~C~--n~C~e~gk~~r~~~~~k~e~~~~G~k~r 130 (631)
+||.|||||..- +.|+ ++|.....+.+..+......+..++++|
T Consensus 33 ~DC~DgsDE~~~-~~C~~~~~C~~~~f~c~~~~~~ci~~~~~gLrkr 78 (80)
T 2kny_A 33 KDCADGADESIA-AGCLYNSTGSGSGSGSTEELRVRLASHLRKLRKR 78 (80)
T ss_dssp CCSSSSTTTSGG-GTCSSSSTTTTCSSCHHHHHHHHTTTTTTTTSSS
T ss_pred CCCCCCCccccc-cCCCCCcccCcccchhhhHHHHHHHHHHHHHHHH
Confidence 379999999752 2477 7888876666666555555444444433
No 39
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=69.32 E-value=1e+02 Score=33.88 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=37.3
Q ss_pred CCCCcccccCcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHhhHHHHHHHHH
Q 006780 88 CCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQ-------AKQNLVKDEAELSNLKNEEKILKG 160 (631)
Q Consensus 88 CCDgSDE~~g~~~C~n~C~e~gk~~r~~~~~k~e~~~~G~k~r~eli~~-------~~~~~~e~~~~l~~L~~e~~~le~ 160 (631)
||--...++. .||.+|.-+-... +.++-++..+.--+..+.+ +..+...++..+...+..+.....
T Consensus 70 c~~~~~~~G~--~CPTtC~l~D~L~-----k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n 142 (464)
T 1m1j_B 70 CKHPLDELGV--LCPTGCELQTTLL-----KQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDI 142 (464)
T ss_dssp EECSSTTTCE--EEECTTHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCccC--cCCCccHHHHHHH-----HhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhh
Confidence 7777777655 4999998744433 2222232222222222222 223334455555555555555554
Q ss_pred HHHHHHHHHH
Q 006780 161 LVQQLKERKE 170 (631)
Q Consensus 161 ~~e~l~~~k~ 170 (631)
.+.+....++
T Consensus 143 ~~~~~~~~~e 152 (464)
T 1m1j_B 143 ILSEYNTEME 152 (464)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 40
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=68.60 E-value=2.8 Score=46.64 Aligned_cols=32 Identities=28% Similarity=0.619 Sum_probs=27.9
Q ss_pred CcEEec-CCCCccccccccCCccCCCCCCCCCCC
Q 006780 56 NTIKCK-DGSKKFAKTQLNDDYCDCPDGTDEPDC 88 (631)
Q Consensus 56 g~F~C~-nGs~~Ip~s~VNDdyCDC~DGSDEPdC 88 (631)
..|.|. || .=||...+=||.=||.|||||-+|
T Consensus 69 ~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sdE~~c 101 (537)
T 3ojy_B 69 EGFVCAQTG-RCVNRRLLCNGDNDCGDQSDEANC 101 (537)
T ss_dssp SSEECTTTC-CEECGGGTTSSSCCSSSSCTTSSC
T ss_pred CccCcCCCC-cEeeccccCCCCCCCCCccccccC
Confidence 579999 77 479999999999899999999754
No 41
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=68.38 E-value=2.7 Score=47.04 Aligned_cols=34 Identities=35% Similarity=0.746 Sum_probs=29.5
Q ss_pred CcEEec-CCCCccccccccCCccCCCCCCCCCCCCC
Q 006780 56 NTIKCK-DGSKKFAKTQLNDDYCDCPDGTDEPDCCD 90 (631)
Q Consensus 56 g~F~C~-nGs~~Ip~s~VNDdyCDC~DGSDEPdCCD 90 (631)
+.|.|. || .=||...+=||.=||.|||||-+|-.
T Consensus 68 ~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sDE~~C~~ 102 (554)
T 3ojy_A 68 QDFQCKETG-RCLKRHLVCNGDQDCLDGSDEDDCED 102 (554)
T ss_dssp SSEECSSSC-CEECGGGTTSSSCCSSSCTTSSSCCS
T ss_pred CcCccCCCC-EEcccccccCCcccCCCccccccCCC
Confidence 589999 77 48999999999999999999987653
No 42
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=67.50 E-value=37 Score=28.93 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006780 130 RKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKE 170 (631)
Q Consensus 130 r~eli~~~~~~~~e~~~~l~~L~~e~~~le~~~e~l~~~k~ 170 (631)
|+...+++..|+..+..+|..-+.+|+.++..+++.+..+.
T Consensus 35 rqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~ 75 (84)
T 1gmj_A 35 RARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556666666666666666666666666655544433
No 43
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=54.45 E-value=2e+02 Score=30.99 Aligned_cols=21 Identities=33% Similarity=0.849 Sum_probs=16.4
Q ss_pred CCCCCcccccCcCCccchhHHHH
Q 006780 87 DCCDGSDEYDGKVKCPNTCWEAG 109 (631)
Q Consensus 87 dCCDgSDE~~g~~~C~n~C~e~g 109 (631)
.||-..++++.- ||.+|.-.-
T Consensus 7 ~c~~~~~~~G~~--CPT~C~i~d 27 (409)
T 1m1j_C 7 NCCILDERFGSY--CPTTCGIAD 27 (409)
T ss_dssp TSSSCCGGGCCE--EECTTHHHH
T ss_pred CcccCCcccCCc--CCCcccHHH
Confidence 399999998664 999997543
No 44
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=52.97 E-value=7 Score=43.40 Aligned_cols=34 Identities=26% Similarity=0.533 Sum_probs=25.7
Q ss_pred CCcEEecCCCCccccccccCCccCCCCCCCCCCCC
Q 006780 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPDCC 89 (631)
Q Consensus 55 ~g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEPdCC 89 (631)
.+.|+|.++. =||.+.+-||.=||.|||||..|-
T Consensus 243 ~~~~~C~~~~-C~~~~~~cdG~~dC~~gsDE~~C~ 276 (565)
T 2xrc_A 243 GKGFHCKSGV-CIPSQYQCNGEVDCITGEDEVGCA 276 (565)
T ss_dssp SSCEEETTTE-EECGGGTTSSSCCSSSCTTSSSCC
T ss_pred CCceecCCCc-ccCccccCCCcccCCCCccccCcC
Confidence 3468887664 677788888888888888887764
No 45
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=47.61 E-value=2.2e+02 Score=38.48 Aligned_cols=11 Identities=9% Similarity=0.389 Sum_probs=5.4
Q ss_pred eEEEEEecCCc
Q 006780 521 KYVYKVCPYKK 531 (631)
Q Consensus 521 ~Y~YelC~~~~ 531 (631)
-|.|.+-+|-.
T Consensus 2423 mYQfSL~~F~~ 2433 (3245)
T 3vkg_A 2423 LYQFSLRAFLD 2433 (3245)
T ss_dssp TCCCCHHHHHH
T ss_pred eeeCCHHHHHH
Confidence 45555554433
No 46
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=47.28 E-value=1.6e+02 Score=26.52 Aligned_cols=21 Identities=5% Similarity=0.128 Sum_probs=10.3
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 006780 103 NTCWEAGKVARDKLKKKIATY 123 (631)
Q Consensus 103 n~C~e~gk~~r~~~~~k~e~~ 123 (631)
..|...-......+-.-++.+
T Consensus 21 ~ECrN~T~lLq~qLTqAQe~l 41 (121)
T 3mq7_A 21 MEARNVTHLLQQELTEAQKGF 41 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 355555555444444444333
No 47
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=44.78 E-value=3.3e+02 Score=30.35 Aligned_cols=34 Identities=26% Similarity=0.595 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCCCcccccCcCCccchhHHHHHHHHHHH
Q 006780 79 CPDGTDEPDCCDGSDEYDGKVKCPNTCWEAGKVARDKL 116 (631)
Q Consensus 79 C~DGSDEPdCCDgSDE~~g~~~C~n~C~e~gk~~r~~~ 116 (631)
||--.|=|-|-| ++|+- +||.=|+-.+-..+..+
T Consensus 27 ~Cke~~WPfCaD--eDwGv--kCPSGCrLQglLdkqEr 60 (562)
T 3ghg_A 27 ACKDSDWPFCSD--EDWNY--KCPSGCRMKGLIDEVNQ 60 (562)
T ss_dssp CCCCCCCCBCCS--SSBTT--EEECHHHHHHHHHHHHH
T ss_pred ccccCCCCcccc--cccCC--CCCcccchhhhHHhhcC
Confidence 343444466755 35653 59999987766654433
No 48
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=43.90 E-value=3.5e+02 Score=29.66 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=27.7
Q ss_pred CCCCCcccccCcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006780 87 DCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQ 139 (631)
Q Consensus 87 dCCDgSDE~~g~~~C~n~C~e~gk~~r~~~~~k~e~~~~G~k~r~eli~~~~~ 139 (631)
.||-..++.+. -||.+|.-. ..+.+.+.-++..+..-+.++.++..
T Consensus 64 ~c~~~~~~fG~--yCPTtCgla-----d~L~kye~~V~~dl~~Le~~l~~isn 109 (461)
T 3ghg_B 64 GCLHADPDLGV--LCPTGCQLQ-----EALLQQERPIRNSVDELNNNVEAVSQ 109 (461)
T ss_dssp CCBCSSTTTCB--CEECHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCcccCC--cCCCcchHH-----HHHHhcccchhhHHHHHHHHHHHHHh
Confidence 49999999865 499999753 33444444444444444444444443
No 49
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=43.84 E-value=9.4 Score=45.01 Aligned_cols=34 Identities=32% Similarity=0.656 Sum_probs=29.1
Q ss_pred CcEEecCCCCccccccccCCccCCCCCCCCCCCCC
Q 006780 56 NTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPDCCD 90 (631)
Q Consensus 56 g~F~C~nGs~~Ip~s~VNDdyCDC~DGSDEPdCCD 90 (631)
..|.|.+| .=|+...+-||.=||.|||||-+|.+
T Consensus 121 ~~F~C~~g-~ci~~~~~c~g~~dC~d~sde~~C~~ 154 (913)
T 3t5o_A 121 NKFRCDSG-RCIARKLECNGENDCGDNSDERDCGR 154 (913)
T ss_dssp SEEECTTS-CEEEGGGSSSSSCCSSSSGGGTTCSS
T ss_pred cccccCCC-ceEccceecCCcccCCCccccccCCC
Confidence 56999987 46999999888889999999987765
No 50
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=41.22 E-value=1.3e+02 Score=23.52 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Q 006780 129 LRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLK 166 (631)
Q Consensus 129 ~r~eli~~~~~~~~e~~~~l~~L~~e~~~le~~~e~l~ 166 (631)
.|+..+..+......++.+...|+.++..|...+..|+
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444555555544444444443
No 51
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=40.20 E-value=2.5e+02 Score=29.64 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=6.1
Q ss_pred HHHHHHhhHHHHHHH
Q 006780 144 DEAELSNLKNEEKIL 158 (631)
Q Consensus 144 ~~~~l~~L~~e~~~l 158 (631)
++.+|.++++....+
T Consensus 402 ~~~~~~~~~~~~~~~ 416 (471)
T 3mq9_A 402 LQQELTEAQKGFQDV 416 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHH
Confidence 334444444443333
No 52
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=40.15 E-value=1.4e+02 Score=31.56 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=13.0
Q ss_pred HHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Q 006780 137 AKQNLVKDEAELSNLKNEEKILKGLVQQL 165 (631)
Q Consensus 137 ~~~~~~e~~~~l~~L~~e~~~le~~~e~l 165 (631)
+++...+.++.+..++++-......+-.|
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMAL 430 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHH
Confidence 33334444555555555544433333333
No 53
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=38.43 E-value=1.6e+02 Score=32.40 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=11.0
Q ss_pred hhhcccCCCCCCcccc
Q 006780 214 KAEENAYSDDKPDDVR 229 (631)
Q Consensus 214 ~~npnfnde~vk~~v~ 229 (631)
...||+=++.|..--.
T Consensus 106 ~~iPN~~~~~vP~g~~ 121 (485)
T 3qne_A 106 NQVGNIVHESVVDSQD 121 (485)
T ss_dssp TTSCCCCCTTSCCCSC
T ss_pred HhCCCCCCccCCCCCC
Confidence 3568888888776533
No 54
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=35.13 E-value=2.3e+02 Score=24.72 Aligned_cols=20 Identities=10% Similarity=0.307 Sum_probs=10.1
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 006780 102 PNTCWEAGKVARDKLKKKIA 121 (631)
Q Consensus 102 ~n~C~e~gk~~r~~~~~k~e 121 (631)
...|...-......+-..++
T Consensus 13 q~ECrNvT~lLq~qLT~Aq~ 32 (99)
T 3ni0_A 13 QAECRNTTHLLQRQLTRTQD 32 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 44566655554444444443
No 55
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=34.07 E-value=1.9e+02 Score=31.28 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=16.3
Q ss_pred HHHHhHHHHHHhhHHHHHHHHHHHHHHH
Q 006780 139 QNLVKDEAELSNLKNEEKILKGLVQQLK 166 (631)
Q Consensus 139 ~~~~e~~~~l~~L~~e~~~le~~~e~l~ 166 (631)
..+.+++.+++.|+.+...+...+..++
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~ 65 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKRR 65 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345555666666666666666655543
No 56
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.72 E-value=78 Score=24.52 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006780 466 KSDAARVRKEYDESSDKLSKIQSRISSLTQKLK 498 (631)
Q Consensus 466 ~~~~~~aR~~~~~ae~~l~~l~~~i~~~e~~L~ 498 (631)
.+++..+|.+..+++.++..|..++..+..+|.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999998875
No 57
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.14 E-value=1.8e+02 Score=22.80 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Q 006780 130 RKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQ 164 (631)
Q Consensus 130 r~eli~~~~~~~~e~~~~l~~L~~e~~~le~~~e~ 164 (631)
|+..+..+......++.+-..|+.++..|...+..
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333334444444444333333333
No 58
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=31.48 E-value=5.5e+02 Score=28.13 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=17.1
Q ss_pred HHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Q 006780 139 QNLVKDEAELSNLKNEEKILKGLVQQLKE 167 (631)
Q Consensus 139 ~~~~e~~~~l~~L~~e~~~le~~~e~l~~ 167 (631)
..+.+++.+++.|+.+...+...+.+++.
T Consensus 77 ~~~r~~~~~~~~l~~~rn~~sk~i~~~~~ 105 (501)
T 1wle_A 77 QELRQLREQIRSLEEEKEAVTEAVRALVV 105 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455556666666666666666655443
No 59
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=31.42 E-value=5.3e+02 Score=35.04 Aligned_cols=40 Identities=18% Similarity=0.042 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006780 106 WEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDE 145 (631)
Q Consensus 106 ~e~gk~~r~~~~~k~e~~~~G~k~r~eli~~~~~~~~e~~ 145 (631)
..+...-+..+..++.-++.|+.+-.+-..+...++.++.
T Consensus 1905 ~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~ 1944 (3245)
T 3vkg_A 1905 VLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLA 1944 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555556666665444444444433333
No 60
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=31.29 E-value=2.4e+02 Score=30.88 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred CccCCCCCCCC---CCCCCCcccccCcCCccchhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 006780 75 DYCDCPDGTDE---PDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKK--------------IATYQEGVLLRKKEIEQA 137 (631)
Q Consensus 75 dyCDC~DGSDE---PdCCDgSDE~~g~~~C~n~C~e~gk~~r~~~~~k--------------~e~~~~G~k~r~eli~~~ 137 (631)
++| +|| +.|+.||-=.+--.+-...-.......+..+... ..+++.-++.....-...
T Consensus 35 pgC-----aDeDwGvkCPSGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~ 109 (491)
T 1m1j_A 35 PIC-----VDDDWGTKCPSGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENY 109 (491)
T ss_dssp CBC-----CTTSTTTEECCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-----ccccccCCCCCccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHH
Q ss_pred HHHHHhHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 006780 138 KQNLVKDEAELSNLKNEE----KILKGLVQQLKERKEQIEKAE 176 (631)
Q Consensus 138 ~~~~~e~~~~l~~L~~e~----~~le~~~e~l~~~k~~~e~~E 176 (631)
.+.-.+++.+|.-|+..+ ..|......++.+...+.++|
T Consensus 110 ~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE 152 (491)
T 1m1j_A 110 GHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLE 152 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 61
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=30.75 E-value=3.3e+02 Score=29.36 Aligned_cols=21 Identities=33% Similarity=0.849 Sum_probs=10.4
Q ss_pred CCCCCcccccCcCCccchhHHHH
Q 006780 87 DCCDGSDEYDGKVKCPNTCWEAG 109 (631)
Q Consensus 87 dCCDgSDE~~g~~~C~n~C~e~g 109 (631)
.||-..++++. -||.+|.-.-
T Consensus 7 ~c~~~~~~fG~--~CPTtCgl~d 27 (411)
T 3ghg_C 7 NCCILDERFGS--YCPTTCGIAD 27 (411)
T ss_dssp -------CCSC--EEECSHHHHH
T ss_pred CceecCcccCC--cCCCcchHHH
Confidence 38988888865 4999997543
No 62
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.51 E-value=5.3e+02 Score=27.58 Aligned_cols=140 Identities=10% Similarity=0.051 Sum_probs=0.0
Q ss_pred CCCCcccccCcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHhhHH
Q 006780 88 CCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLV--------------KDEAELSNLKN 153 (631)
Q Consensus 88 CCDgSDE~~g~~~C~n~C~e~gk~~r~~~~~k~e~~~~G~k~r~eli~~~~~~~~--------------e~~~~l~~L~~ 153 (631)
|+.||-=.+.-.+-...-.......+..+....+.....+..-..+.+.++...+ +++.+|.-|+.
T Consensus 48 CPsGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~ 127 (390)
T 1deq_A 48 CPSGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRR 127 (390)
T ss_pred CCccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHhhhhc
Q 006780 154 EE----KILKGLVQQLKERKEQIEKAEEKERL------------QREKEEKERKEAEENERKEKSESGEKAMQEKNKAEE 217 (631)
Q Consensus 154 e~----~~le~~~e~l~~~k~~~e~~E~~~~~------------~~~k~~~~~~~~~~~~~~~~~~le~~l~~~~~~~np 217 (631)
.| ..+......|+.+...+.++|..-.+ -.++..++-.+.+.+++.. +.....+......|.|
T Consensus 128 ~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~q-v~a~~llP~~~~q~lp 206 (390)
T 1deq_A 128 KVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQ-VIAINLLPSRDIQYLP 206 (390)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHh-hhhhcccccccccccc
Q ss_pred ccCCCCCCccc
Q 006780 218 NAYSDDKPDDV 228 (631)
Q Consensus 218 nfnde~vk~~v 228 (631)
.+-.--+|..|
T Consensus 207 ~LK~~p~kd~v 217 (390)
T 1deq_A 207 ILKMSTITGPV 217 (390)
T ss_pred ccccccccccC
No 63
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=29.54 E-value=29 Score=28.26 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=21.1
Q ss_pred ccccccccCCccC-CCCCC-CCC---CCCCCcccc
Q 006780 66 KFAKTQLNDDYCD-CPDGT-DEP---DCCDGSDEY 95 (631)
Q Consensus 66 ~Ip~s~VNDdyCD-C~DGS-DEP---dCCDgSDE~ 95 (631)
.+.+...|+++|. |-+|. +.+ .+||+|+-.
T Consensus 8 ~~~~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~ 42 (71)
T 2ku3_A 8 HMQSLIDEDAVCSICMDGESQNSNVILFCDMCNLA 42 (71)
T ss_dssp --CCCCCSSCSCSSSCCCCCCSSSCEEECSSSCCE
T ss_pred ccccCCCCCCCCCCCCCCCCCCCCCEEECCCCCCc
Confidence 4567788999999 77664 333 499999873
No 64
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.63 E-value=3.4e+02 Score=24.73 Aligned_cols=29 Identities=17% Similarity=0.027 Sum_probs=14.0
Q ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006780 142 VKDEAELSNLKNEEKILKGLVQQLKERKE 170 (631)
Q Consensus 142 ~e~~~~l~~L~~e~~~le~~~e~l~~~k~ 170 (631)
..++.+++.+..++..++..+..++.+.+
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e 106 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAE 106 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554444444443
No 65
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.27 E-value=3.3e+02 Score=24.51 Aligned_cols=14 Identities=7% Similarity=-0.045 Sum_probs=5.9
Q ss_pred ccchhHHHHHHHHH
Q 006780 101 CPNTCWEAGKVARD 114 (631)
Q Consensus 101 C~n~C~e~gk~~r~ 114 (631)
|+|.-.-+-++..+
T Consensus 23 CrN~T~lLq~qLTq 36 (121)
T 3mq7_A 23 ARNVTHLLQQELTE 36 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHH
Confidence 44444444433333
No 66
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.11 E-value=2.8e+02 Score=23.57 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=7.4
Q ss_pred HHHhhHHHHHHHHHHHHHH
Q 006780 147 ELSNLKNEEKILKGLVQQL 165 (631)
Q Consensus 147 ~l~~L~~e~~~le~~~e~l 165 (631)
++..|+.+-..|+..+..|
T Consensus 44 r~~~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQL 62 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444333333333333
No 67
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=27.97 E-value=1.3e+02 Score=21.65 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=18.2
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006780 143 KDEAELSNLKNEEKILKGLVQQLKERKE 170 (631)
Q Consensus 143 e~~~~l~~L~~e~~~le~~~e~l~~~k~ 170 (631)
+++.++++|-.+...|+..+.+|+..+.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3556666666777777777777666543
No 68
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.64 E-value=3.7e+02 Score=24.49 Aligned_cols=34 Identities=12% Similarity=0.109 Sum_probs=18.7
Q ss_pred HHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006780 137 AKQNLVKDEAELSNLKNEEKILKGLVQQLKERKE 170 (631)
Q Consensus 137 ~~~~~~e~~~~l~~L~~e~~~le~~~e~l~~~k~ 170 (631)
+.....++..++..|+.++..+..+.+.++.+++
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~ 113 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIK 113 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455666666666666655555555544
No 69
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=26.22 E-value=26 Score=30.05 Aligned_cols=39 Identities=31% Similarity=0.653 Sum_probs=25.2
Q ss_pred cCCccCCCCCCCCC-CCCCCcc---ccc------------CcCCccchhHHHHHH
Q 006780 73 NDDYCDCPDGTDEP-DCCDGSD---EYD------------GKVKCPNTCWEAGKV 111 (631)
Q Consensus 73 NDdyCDC~DGSDEP-dCCDgSD---E~~------------g~~~C~n~C~e~gk~ 111 (631)
..-||=|...++.. .+||+|+ +|- +.-.|+.-|..+.+.
T Consensus 25 ~~~yCiC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~~~k~ 79 (90)
T 2jmi_A 25 EEVYCFCRNVSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKEIANQ 79 (90)
T ss_dssp CSCCSTTTCCCSSSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHHHHHH
T ss_pred CCcEEEeCCCCCCCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcchhhc
Confidence 44588887655543 5899987 762 334577668765544
No 70
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=24.96 E-value=3.6e+02 Score=28.75 Aligned_cols=14 Identities=7% Similarity=-0.235 Sum_probs=11.1
Q ss_pred hhhcccCCCCCCcc
Q 006780 214 KAEENAYSDDKPDD 227 (631)
Q Consensus 214 ~~npnfnde~vk~~ 227 (631)
...||+=++.|..-
T Consensus 99 ~~ipN~~~~~vp~g 112 (421)
T 1ses_A 99 LQVPLPPWPGAPVG 112 (421)
T ss_dssp TTCCCCCCTTSCSS
T ss_pred HhCCCCCCCCCCCC
Confidence 45799999988766
No 71
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.59 E-value=97 Score=27.17 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006780 467 SDAARVRKEYDESSDKLSKIQSRISSLTQKLKH 499 (631)
Q Consensus 467 ~~~~~aR~~~~~ae~~l~~l~~~i~~~e~~L~~ 499 (631)
..+..+|.+|++++.+-..|+.++..++-.|..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999988876
No 72
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.28 E-value=2e+02 Score=23.76 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=6.4
Q ss_pred HHHHHHhhHHHHHHHHH
Q 006780 144 DEAELSNLKNEEKILKG 160 (631)
Q Consensus 144 ~~~~l~~L~~e~~~le~ 160 (631)
++++|..+..++..|..
T Consensus 45 LEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 45 LELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 73
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.24 E-value=4.6e+02 Score=24.82 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=2.5
Q ss_pred HHhhHHH
Q 006780 148 LSNLKNE 154 (631)
Q Consensus 148 l~~L~~e 154 (631)
|.+|-.+
T Consensus 115 I~aL~~E 121 (175)
T 3lay_A 115 INAVAKE 121 (175)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 74
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=24.11 E-value=29 Score=32.68 Aligned_cols=21 Identities=38% Similarity=1.078 Sum_probs=16.3
Q ss_pred cCCccC-CCCCCCCCCCCCCccc
Q 006780 73 NDDYCD-CPDGTDEPDCCDGSDE 94 (631)
Q Consensus 73 NDdyCD-C~DGSDEPdCCDgSDE 94 (631)
||++|- |-+|. +-.|||+|+-
T Consensus 3 ~~~~C~~C~~~g-~ll~Cd~C~~ 24 (184)
T 3o36_A 3 NEDWCAVCQNGG-ELLCCEKCPK 24 (184)
T ss_dssp SCSSCTTTCCCS-SCEECSSSSC
T ss_pred CCCccccCCCCC-eeeecCCCCc
Confidence 899999 65664 4679999886
No 75
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=23.47 E-value=1.3e+02 Score=21.66 Aligned_cols=26 Identities=31% Similarity=0.343 Sum_probs=15.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006780 144 DEAELSNLKNEEKILKGLVQQLKERK 169 (631)
Q Consensus 144 ~~~~l~~L~~e~~~le~~~e~l~~~k 169 (631)
++.++++|-.+...|+.++.+|+..+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45556666666666666666666544
No 76
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.82 E-value=2.2e+02 Score=23.30 Aligned_cols=10 Identities=0% Similarity=0.062 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 006780 119 KIATYQEGVL 128 (631)
Q Consensus 119 k~e~~~~G~k 128 (631)
+..-++.++.
T Consensus 13 RR~~in~~f~ 22 (83)
T 1nkp_B 13 RRDHIKDSFH 22 (83)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 77
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=22.75 E-value=1.1e+02 Score=23.44 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006780 470 ARVRKEYDESSDKLSKIQSRISSLTQK 496 (631)
Q Consensus 470 ~~aR~~~~~ae~~l~~l~~~i~~~e~~ 496 (631)
-.+|+...++++.|++++.+|+.++.+
T Consensus 10 v~~Rkk~eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 10 VSGRKKLEELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 467899999999999999999999875
No 78
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.59 E-value=2.2e+02 Score=24.20 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=7.8
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 006780 149 SNLKNEEKILKGLVQQLKER 168 (631)
Q Consensus 149 ~~L~~e~~~le~~~e~l~~~ 168 (631)
..|+..++.++..++.+...
T Consensus 73 ~~L~~~~e~ie~~i~~le~~ 92 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQ 92 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444434333333
No 79
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=22.21 E-value=40 Score=26.76 Aligned_cols=26 Identities=46% Similarity=0.908 Sum_probs=19.6
Q ss_pred cccccCCccC-CCCCCCCCCCCCCcccc
Q 006780 69 KTQLNDDYCD-CPDGTDEPDCCDGSDEY 95 (631)
Q Consensus 69 ~s~VNDdyCD-C~DGSDEPdCCDgSDE~ 95 (631)
++..||++|. |-+| .+-.|||+|+-+
T Consensus 3 ~~~~~~~~C~vC~~~-g~ll~CD~C~~~ 29 (66)
T 1xwh_A 3 MAQKNEDECAVCRDG-GELICCDGCPRA 29 (66)
T ss_dssp CCCSCCCSBSSSSCC-SSCEECSSCCCE
T ss_pred cCCCCCCCCccCCCC-CCEEEcCCCChh
Confidence 4567999999 6565 456799999873
No 80
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.94 E-value=5.5e+02 Score=25.15 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=8.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHH
Q 006780 148 LSNLKNEEKILKGLVQQLKER 168 (631)
Q Consensus 148 l~~L~~e~~~le~~~e~l~~~ 168 (631)
|..|+.++..|+....+|+..
T Consensus 124 ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 124 IEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444344333
No 81
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=21.80 E-value=96 Score=27.32 Aligned_cols=47 Identities=4% Similarity=0.048 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhhhccceEEeecCeEE
Q 006780 472 VRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYV 523 (631)
Q Consensus 472 aR~~~~~ae~~l~~l~~~i~~~e~~L~~d~G~~~~f~~L~~~C~~~~~g~Y~ 523 (631)
+++++..+++++..|+.++..++..+.. .-|....+.||.+....-+
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~~~~-----~~w~~~~~~Cy~~~~~~~t 48 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKLHAF-----SMGKKSGKKFFVTNHERMP 48 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTTCCTTSCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcC-----CCeEEeCCEEEEEeCCCCC
Confidence 4566777777788888887777765322 3356667889887654333
No 82
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=21.46 E-value=7.1e+02 Score=27.24 Aligned_cols=15 Identities=13% Similarity=0.029 Sum_probs=10.3
Q ss_pred hhhcccCCCCCCccc
Q 006780 214 KAEENAYSDDKPDDV 228 (631)
Q Consensus 214 ~~npnfnde~vk~~v 228 (631)
...||+=++.|...-
T Consensus 139 ~~iPN~~~~~vP~g~ 153 (484)
T 3lss_A 139 LNVGNILHESVPIAQ 153 (484)
T ss_dssp TTCCCCCCTTSCCCS
T ss_pred HhCCCCCCccCCCCC
Confidence 356888888776543
No 83
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.42 E-value=3.6e+02 Score=22.56 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=18.4
Q ss_pred HHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006780 135 EQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKE 170 (631)
Q Consensus 135 ~~~~~~~~e~~~~l~~L~~e~~~le~~~e~l~~~k~ 170 (631)
.++......++.-|.+|+.+...++..++-++.+.+
T Consensus 35 ~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~ 70 (78)
T 3iv1_A 35 EDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDE 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555444
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.39 E-value=6.1e+02 Score=26.71 Aligned_cols=48 Identities=10% Similarity=-0.013 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006780 123 YQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKE 170 (631)
Q Consensus 123 ~~~G~k~r~eli~~~~~~~~e~~~~l~~L~~e~~~le~~~e~l~~~k~ 170 (631)
++.-.+...++.++.+..+.......+..+.+++.++.+.++++....
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNG 459 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhh
Confidence 444444455555555555544444444444444444444444444443
No 85
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.10 E-value=1.7e+02 Score=22.62 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=13.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Q 006780 147 ELSNLKNEEKILKGLVQQLKERKE 170 (631)
Q Consensus 147 ~l~~L~~e~~~le~~~e~l~~~k~ 170 (631)
.++.|+.+..+|+.+++.|..+.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555443
No 86
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.04 E-value=4.3e+02 Score=22.92 Aligned_cols=10 Identities=0% Similarity=-0.160 Sum_probs=4.0
Q ss_pred HHHhHHHhhh
Q 006780 206 EKAMQEKNKA 215 (631)
Q Consensus 206 ~~l~~~~~~~ 215 (631)
..|..|.+.|
T Consensus 85 ~eLe~F~~~y 94 (96)
T 1t3j_A 85 SELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3334443344
Done!